Citrus Sinensis ID: 002716
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 889 | 2.2.26 [Sep-21-2011] | |||||||
| Q9ZQX6 | 888 | ETO1-like protein 1 OS=Ar | yes | no | 0.996 | 0.997 | 0.747 | 0.0 | |
| O65020 | 951 | Ethylene-overproduction p | no | no | 0.940 | 0.879 | 0.528 | 0.0 | |
| Q9LV01 | 925 | ETO1-like protein 2 OS=Ar | no | no | 0.935 | 0.899 | 0.467 | 0.0 |
| >sp|Q9ZQX6|ETOL1_ARATH ETO1-like protein 1 OS=Arabidopsis thaliana GN=EOL1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 1337 bits (3461), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 666/891 (74%), Positives = 771/891 (86%), Gaps = 5/891 (0%)
Query: 1 MRTFFPSDSCKESQLNGFNPQSWLQVERGKLSKLSSHNSSSSSIESFIKVPEPRILPNYK 60
MRTF+PSDSCKESQL+ NPQSWLQVERGKLS +S ++ ESFIKVPEP+ILP+YK
Sbjct: 1 MRTFYPSDSCKESQLDSLNPQSWLQVERGKLSSSASSSAPLCR-ESFIKVPEPQILPHYK 59
Query: 61 PVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAWQKASTVHEK 120
P+DYVEVLAQIHEEL+ CPLQERS LYLLQ+QVF+GLGE KL RRSL+ AWQ+A+TVHEK
Sbjct: 60 PLDYVEVLAQIHEELDTCPLQERSILYLLQYQVFRGLGETKLRRRSLQSAWQEATTVHEK 119
Query: 121 LVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQTDINVAGSHETVSMSGDQ- 179
+VFG+WL+YEKQGEE+I DLL +C K +EF P+DIAS+ A S E S+ ++
Sbjct: 120 VVFGSWLRYEKQGEEVITDLLSSCGKYSEEFVPLDIASYFPA--TTASSPEAASVKTNRS 177
Query: 180 VLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIIS 239
V +NVVF+I EEKI C R+K A+LSAPF AML G+F ESL ++ID+SEN++S S +R++
Sbjct: 178 VSKNVVFKIGEEKIACQRRKIASLSAPFHAMLYGNFTESLLDEIDMSENHVSSSAMRVVR 237
Query: 240 DFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEEN 299
DFSV G L GV+ NLLLE+L+FANKFCCERLKDACDR+LASL++S E A+ELM +A+EEN
Sbjct: 238 DFSVVGVLIGVSKNLLLEVLVFANKFCCERLKDACDRELASLISSMECAIELMDFALEEN 297
Query: 300 SPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLD 359
SP+LA SCLQVFL E+PD LNDERVVE+ + NR S M G A FSLY LSEV+M +D
Sbjct: 298 SPILASSCLQVFLYEMPDSLNDERVVEVLTRVNRSQVSTMAGKAPFSLYSCLSEVSMCID 357
Query: 360 PRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIA 419
PRSD+T+ FLE+L++ AE DRQ++L FH+LGC+RLLRKEY EAE FE A N GH+YS
Sbjct: 358 PRSDRTLGFLEKLVDFAENDRQQVLGFHRLGCMRLLRKEYREAEEAFETAFNLGHVYSAT 417
Query: 420 GLARLGYIKGHKLWAYEKLNSVISSVTP-LGWMYQERSLYCEGDKRWEDLDKATALDPTL 478
GLARLGYI+GH+LWAYEKL+SVISSV+P LGWMYQERS YCEGDK+ EDL+KAT LDPTL
Sbjct: 418 GLARLGYIQGHRLWAYEKLSSVISSVSPPLGWMYQERSFYCEGDKKLEDLEKATELDPTL 477
Query: 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAI 538
+YPYMYRA + M+KQN +AAL EINRILGFKLALECLE+RFC +L ++DY+AAL D+QA
Sbjct: 478 TYPYMYRAVTRMSKQNAKAALEEINRILGFKLALECLEIRFCLYLGMDDYEAALRDIQAA 537
Query: 539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE 598
LTL PDYRMF+G+VA QL LV EH++NWT ADCW+QLY++WS+VDDIGSLSVIYQMLE
Sbjct: 538 LTLCPDYRMFDGKVAGRQLQTLVYEHVENWTTADCWMQLYEKWSNVDDIGSLSVIYQMLE 597
Query: 599 SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGL 658
SDA KGVLYFRQSLLLLRLNCPEAAMRSLQLAR+HA+SDHERLVYEGWILYDT HCEEGL
Sbjct: 598 SDACKGVLYFRQSLLLLRLNCPEAAMRSLQLAREHASSDHERLVYEGWILYDTGHCEEGL 657
Query: 659 RKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNL 718
+KA+ESI +KRSFEA+FL+AYALA+SS D S SSTVVSLLEDALKCPSDRLRKGQALNNL
Sbjct: 658 QKAKESIGIKRSFEAYFLQAYALAESSLDPSSSSTVVSLLEDALKCPSDRLRKGQALNNL 717
Query: 719 GSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNA 778
GSVYVDC +LDLAADCY NALK+RHTRAHQGLARVHFL+N+K AYEEMT+LI+KA+NNA
Sbjct: 718 GSVYVDCEKLDLAADCYINALKVRHTRAHQGLARVHFLRNDKAAAYEEMTRLIEKAQNNA 777
Query: 779 SAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFK 838
SAYEKRSEYCDREL ++DLEMVT+LDPLRVYPYRYRAAVLMDS KE EAI ELSRAIAFK
Sbjct: 778 SAYEKRSEYCDRELAKSDLEMVTRLDPLRVYPYRYRAAVLMDSRKEREAITELSRAIAFK 837
Query: 839 ADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVYSHEP 889
ADLHLLHLRAAFHEH GDV ALRDCRAALSVDPN QEMLELHSRV SHEP
Sbjct: 838 ADLHLLHLRAAFHEHIGDVTSALRDCRAALSVDPNHQEMLELHSRVNSHEP 888
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Possible regulator of the ethylene pathway, which acts by regulating the stability of 1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes. May act as a substrate-specific adapter that connects ACS enzymes, such as ACS5, to ubiquitin ligase complexes, leading to proteasomal degradation of ACS enzymes. Arabidopsis thaliana (taxid: 3702) |
| >sp|O65020|ETO1_ARATH Ethylene-overproduction protein 1 OS=Arabidopsis thaliana GN=ETO1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 878 bits (2269), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/849 (52%), Positives = 596/849 (70%), Gaps = 13/849 (1%)
Query: 52 EPRILPNYKPVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAW 111
EP+I P K VD VE +AQ++ +E C E+S YL Q +F+G+ + KL RRSLR +
Sbjct: 101 EPQIDPCLKFVDLVEKMAQVYRRIENCSQFEKSGAYLEQCAIFRGISDPKLFRRSLRSSR 160
Query: 112 QKASTVHEKLVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQTD-----INV 166
Q A VH K+V +WL++E++ +ELI ++C E + S +
Sbjct: 161 QHAVDVHAKVVLASWLRFERREDELIGTTSMDCCGRNLECPKATLVSGYDPESVYDPCVC 220
Query: 167 AGSHETVSMSGDQ------VLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLC 220
+G+ + M+ D+ V ++ F I +E++ C R K A+LS PF AML G F E
Sbjct: 221 SGASRSEMMNEDECSTSQEVDYDMSFCIGDEEVRCVRYKIASLSRPFKAMLYGGFREMKR 280
Query: 221 EDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLAS 280
I+ ++N IS G+R FS T L+ PN++LE+L AN+FCC+ LK ACD LA
Sbjct: 281 ATINFTQNGISVEGMRAAEIFSRTNRLDNFPPNVVLELLKLANRFCCDELKSACDSHLAH 340
Query: 281 LVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMV 340
LV S ++A+ L+ Y +EE + +L +CLQVFLRELP +++ V++IF A + R +
Sbjct: 341 LVNSLDEAMLLIEYGLEEAAYLLVAACLQVFLRELPSSMHNPNVIKIFCSAEGRERLASL 400
Query: 341 GLASFSLYCLLSEVAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYD 400
G ASF+LY LS++AM D +S+ TV LERL+E A ++ LA+HQLG V L RKEY
Sbjct: 401 GHASFTLYFFLSQIAMEDDMKSNTTVMLLERLVECAVDSWEKQLAYHQLGVVMLERKEYK 460
Query: 401 EAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCE 460
+A+ F AAV AGH+YS+ G+AR + + H+ AY+ +NS+IS GWM+QERSLYC
Sbjct: 461 DAQRWFNAAVEAGHLYSLVGVARTKFKRDHRYSAYKIINSLISDHKATGWMHQERSLYCS 520
Query: 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFC 520
G ++ DLD AT DPTL++PY +RA +L+ + AA+AE+N+ILGFK + +CLE+R
Sbjct: 521 GKEKLLDLDTATEFDPTLTFPYKFRAVALVEENQFGAAIAELNKILGFKASPDCLEMRAW 580
Query: 521 FFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDR 580
+ +EDY+ AL D++A+LTL P++ MF ++ + L+R W+ ADCW+QLYDR
Sbjct: 581 ISIGMEDYEGALKDIRALLTLEPNFMMFNWKIHGDHMVELLRPLAQQWSQADCWMQLYDR 640
Query: 581 WSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHER 640
WSSVDDIGSL+V++ ML +D K +L FRQSLLLLRLNC +AAMRSL+LAR H+ S+HER
Sbjct: 641 WSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNCQKAAMRSLRLARNHSKSEHER 700
Query: 641 LVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLED 700
LVYEGWILYDT H EE L KAEESI ++RSFEAFFLKAYALADS+ D S+ V+ LL++
Sbjct: 701 LVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSTLDPDSSNYVIQLLQE 760
Query: 701 ALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNK 760
ALKCPSD LRKGQALNNLGSVYVDC +LDLAADCY+NAL I+HTRAHQGLARV+ LKN +
Sbjct: 761 ALKCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYTNALTIKHTRAHQGLARVYHLKNQR 820
Query: 761 TTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMD 820
AY+EMTKLI+KA+NNASAYEKRSEYCDRE+ ++DL + TQLDPLR YPYRYRAAVLMD
Sbjct: 821 KAAYDEMTKLIEKAQNNASAYEKRSEYCDREMAQSDLCLATQLDPLRTYPYRYRAAVLMD 880
Query: 821 SHKENEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLEL 880
HKE+EAI ELSRAI+FK DL LLHLRAAF++ G+ A++DC AAL +DP + LEL
Sbjct: 881 DHKESEAIDELSRAISFKPDLQLLHLRAAFYDSMGEGASAIKDCEAALCIDPGHADTLEL 940
Query: 881 HSRVYSHEP 889
+ + + EP
Sbjct: 941 YHK--AREP 947
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Essential regulator of the ethylene pathway, which acts by regulating the stability of 1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes. May act as a substrate-specific adapter that connects ACS enzymes, such as ACS5, to ubiquitin ligase complexes, leading to proteasomal degradation of ACS enzymes. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LV01|ETOL2_ARATH ETO1-like protein 2 OS=Arabidopsis thaliana GN=EOL2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/850 (46%), Positives = 550/850 (64%), Gaps = 18/850 (2%)
Query: 52 EPRILPNYKPVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAW 111
EP + KP+D VE L+ ++ +E E S LYL Q+ V + LG+AKL+RR L A
Sbjct: 60 EPPLDSYLKPIDLVESLSNLYRRIESSSESEASMLYLEQYAVLRSLGDAKLLRRCLLNAR 119
Query: 112 QKASTVHEKLVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQTDINVAGSH- 170
+ A V K+VF AWL++ ++ EL+ ++C+ E + +++ G
Sbjct: 120 RHAIDVPCKVVFSAWLRFFRREHELVGVESMDCNGLASECPKTSLTHGCDLNVDDEGCEC 179
Query: 171 ETV----------------SMSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGS 214
TV SG + ++ F + EK +C R + AALS PF AML GS
Sbjct: 180 STVCEDEFGSDDVKISKADEFSGLDEVSDISFCVGSEKAKCVRSRIAALSRPFEAMLYGS 239
Query: 215 FMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDAC 274
F+ES +ID SEN IS + ++ +S ++ + E+L A+KFCC+ LK C
Sbjct: 240 FVESTTSEIDFSENGISIEAMLALNIYSRIKRVDLFRVETVFELLQLASKFCCDDLKSEC 299
Query: 275 DRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQ 334
+ +LA+ V + A+ + YA+EE + +L +CLQVFLRELP L++ +V+ F + +
Sbjct: 300 EARLAASVTDLDKALTFVEYALEERTTLLLSACLQVFLRELPQSLHNPKVMRFFCSSEAK 359
Query: 335 HRSIMVGL-ASFSLYCLLSEVAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVR 393
+ +G F LY LS+V M +D + LER E A T+ Q+ L+ HQ+GCV
Sbjct: 360 EQLAFLGSECVFLLYYFLSQVGMEEKLTTDTMLILLERTREFARTNWQKALSLHQMGCVL 419
Query: 394 LLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQ 453
RK+Y A+ F A + GH+YS+AG++R Y +G + AY +N +IS+ P GWMYQ
Sbjct: 420 FERKDYKAAQFHFRLASSLGHVYSLAGVSRTEYKQGKRYSAYRLMNFLISNHKPHGWMYQ 479
Query: 454 ERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALE 513
ERSLY G ++ +DL AT LDPTLS+PY YRA ++ ++ A EI+R++ FKL+ E
Sbjct: 480 ERSLYNVGVEKLKDLATATELDPTLSFPYKYRAVMKFEQKQIKEAFQEIDRLIQFKLSPE 539
Query: 514 CLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADC 573
CLELR +LA D ++ L D++A+L+L P+Y +F G++ + L + I+ + ADC
Sbjct: 540 CLELRAWLYLATGDRESCLRDLRAVLSLEPNYVVFGGKMRDDLVEALTAQCIEVESEADC 599
Query: 574 WLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 633
W++L+DRWS+VDD+ SL+V++QML++D K L FRQSLLLLRLNC AAMR L++A
Sbjct: 600 WVRLFDRWSAVDDVASLAVVHQMLQNDPSKNFLRFRQSLLLLRLNCQGAAMRCLRMAWNL 659
Query: 634 AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSST 693
A S+ ERLVYEGW+LYD + EE L KAEE+I ++RSFEAFFLKAYALAD + D+ S
Sbjct: 660 ATSEAERLVYEGWLLYDMGYVEETLTKAEEAISIQRSFEAFFLKAYALADKNLDADEISC 719
Query: 694 VVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARV 753
VV +LE+ALKCPSD LRKGQALNNLGS+Y++ G LD A Y NA++I+H RA QGLARV
Sbjct: 720 VVQVLEEALKCPSDGLRKGQALNNLGSIYINLGMLDQAETAYKNAIEIKHIRARQGLARV 779
Query: 754 HFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRY 813
+FLKN + A EEMTKLI+K+ + A+AYEKRSEYC+RE + DL+M T LDPLR YPYRY
Sbjct: 780 YFLKNQRKEACEEMTKLIEKSCSKAAAYEKRSEYCEREKAKEDLDMATTLDPLRTYPYRY 839
Query: 814 RAAVLMDSHKENEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPN 873
RAAVLMD +E EA+ ELS+AIAF+ +L LHLRAAFHE TG++ A +DC AAL +DPN
Sbjct: 840 RAAVLMDDQRETEAVEELSKAIAFRPELQTLHLRAAFHEATGNLSLATQDCEAALCLDPN 899
Query: 874 DQEMLELHSR 883
E L L+SR
Sbjct: 900 HTETLHLYSR 909
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Potential regulator of the ethylene pathway, which acts by regulating the stability of 1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes. May act as a substrate-specific adapter that connects ACS enzymes, such as ACS5, to ubiquitin ligase complexes, leading to proteasomal degradation of ACS enzymes. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 889 | ||||||
| 359495432 | 886 | PREDICTED: ETO1-like protein 1-like [Vit | 0.996 | 1.0 | 0.843 | 0.0 | |
| 449455250 | 890 | PREDICTED: ETO1-like protein 1-like [Cuc | 0.998 | 0.997 | 0.792 | 0.0 | |
| 449526563 | 890 | PREDICTED: ETO1-like protein 1-like [Cuc | 0.998 | 0.997 | 0.791 | 0.0 | |
| 255559841 | 851 | conserved hypothetical protein [Ricinus | 0.955 | 0.997 | 0.824 | 0.0 | |
| 70780055 | 886 | ethylene overproducer-like 1 [Solanum ly | 0.996 | 1.0 | 0.778 | 0.0 | |
| 350539533 | 886 | ethylene-overproducer1-like protein [Sol | 0.996 | 1.0 | 0.776 | 0.0 | |
| 356572224 | 886 | PREDICTED: ETO1-like protein 1-like [Gly | 0.996 | 1.0 | 0.769 | 0.0 | |
| 356504961 | 888 | PREDICTED: ETO1-like protein 1-like [Gly | 0.997 | 0.998 | 0.774 | 0.0 | |
| 224082686 | 787 | predicted protein [Populus trichocarpa] | 0.884 | 0.998 | 0.835 | 0.0 | |
| 356500164 | 886 | PREDICTED: ETO1-like protein 1-like [Gly | 0.996 | 1.0 | 0.761 | 0.0 |
| >gi|359495432|ref|XP_002280519.2| PREDICTED: ETO1-like protein 1-like [Vitis vinifera] gi|296084480|emb|CBI25039.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1533 bits (3969), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 750/889 (84%), Positives = 811/889 (91%), Gaps = 3/889 (0%)
Query: 1 MRTFFPSDSCKESQLNGFNPQSWLQVERGKLSKLSSHNSSSSSIESFIKVPEPRILPNYK 60
M+ FPS+SCKE+QLN FNPQSWLQVERGKLSK SS +SSS S IKVPEP ILP +K
Sbjct: 1 MKNLFPSESCKETQLNAFNPQSWLQVERGKLSKFSSQSSSSIE--SLIKVPEPPILPFFK 58
Query: 61 PVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAWQKASTVHEK 120
PVDYVEVLAQIHEELE CP QERS+LYLLQFQVF+GLGE KLMRRSLR AWQ+ASTV EK
Sbjct: 59 PVDYVEVLAQIHEELESCPPQERSNLYLLQFQVFRGLGEVKLMRRSLRSAWQRASTVQEK 118
Query: 121 LVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQTDINVAGSHETVSMSGDQV 180
L+FGAWLKYEKQGEELIADLL +C KC QEFGPIDIAS L D N + S+E V M+G+++
Sbjct: 119 LIFGAWLKYEKQGEELIADLLASCGKCAQEFGPIDIASQLPADSNTS-SNEAVVMNGNEI 177
Query: 181 LRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISD 240
L+ V+FRI +EKI CDRQK A LSAPF AMLNG F ESL EDIDLSENNISPSG+R I +
Sbjct: 178 LKTVIFRIGDEKIVCDRQKIAGLSAPFHAMLNGCFTESLQEDIDLSENNISPSGMRAIHE 237
Query: 241 FSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENS 300
F +TGSL V P+LLLEILIF NKFCCERLKDAC RKLASLV+SR+DAVEL+ YA+EENS
Sbjct: 238 FCMTGSLGEVPPDLLLEILIFGNKFCCERLKDACGRKLASLVSSRDDAVELIDYALEENS 297
Query: 301 PVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDP 360
PVLA SCLQVFL ELPDCLND RV+EI S ANRQ RSIMVG ASFSLYC LSEVAM LDP
Sbjct: 298 PVLAASCLQVFLHELPDCLNDNRVLEILSDANRQQRSIMVGPASFSLYCFLSEVAMALDP 357
Query: 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAG 420
RSD T CFLERL+ESAE+ RQRLLA HQLGCVRLLRKEYDEAE LFEAA+NAGH+YS+AG
Sbjct: 358 RSDTTACFLERLVESAESSRQRLLACHQLGCVRLLRKEYDEAEQLFEAALNAGHVYSVAG 417
Query: 421 LARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSY 480
L RLGY+KGHKLW+Y+KL+SVISS TPLGWMYQERSLYCEGDKRWEDL+KAT LDPTL+Y
Sbjct: 418 LVRLGYLKGHKLWSYDKLSSVISSFTPLGWMYQERSLYCEGDKRWEDLEKATELDPTLTY 477
Query: 481 PYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILT 540
PYMYRA+SLM KQNV+AALAEIN++LGFKLALECLELRFCF+LA+E+Y+AA CDVQAILT
Sbjct: 478 PYMYRAASLMRKQNVQAALAEINQVLGFKLALECLELRFCFYLAVENYEAAFCDVQAILT 537
Query: 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD 600
LSPDYRMFEGRVAASQL MLVREH+++WT ADCWLQLYDRWSSVDDIGSLSVIYQMLESD
Sbjct: 538 LSPDYRMFEGRVAASQLRMLVREHVESWTTADCWLQLYDRWSSVDDIGSLSVIYQMLESD 597
Query: 601 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRK 660
A KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA+++HERLVYEGWILYDT HCEEGLRK
Sbjct: 598 AAKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHASNEHERLVYEGWILYDTGHCEEGLRK 657
Query: 661 AEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGS 720
AEESI +KRSFEAFFLKAYALADSSQD SCSSTVVSLLEDALKCPSDRLRKGQALNNLGS
Sbjct: 658 AEESIGLKRSFEAFFLKAYALADSSQDPSCSSTVVSLLEDALKCPSDRLRKGQALNNLGS 717
Query: 721 VYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASA 780
VYVDCG+L+LAADCY NALKIRHTRAHQGLARVHFLKN+KT AY EMTKLI+KARNNASA
Sbjct: 718 VYVDCGKLELAADCYINALKIRHTRAHQGLARVHFLKNDKTAAYVEMTKLIEKARNNASA 777
Query: 781 YEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKAD 840
YEKRSEYC+RELT+ADLEMVT+LDPLRVYPYRYRAAVLMDSHKE EAIAELSRAIAFKAD
Sbjct: 778 YEKRSEYCERELTKADLEMVTRLDPLRVYPYRYRAAVLMDSHKEKEAIAELSRAIAFKAD 837
Query: 841 LHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVYSHEP 889
LHLLHLRAAFHEH GDVLGALRDCRAALSVDPN QEMLELHSRV SHEP
Sbjct: 838 LHLLHLRAAFHEHIGDVLGALRDCRAALSVDPNHQEMLELHSRVNSHEP 886
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449455250|ref|XP_004145366.1| PREDICTED: ETO1-like protein 1-like [Cucumis sativus] gi|449473087|ref|XP_004153780.1| PREDICTED: ETO1-like protein 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1435 bits (3715), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 706/891 (79%), Positives = 786/891 (88%), Gaps = 3/891 (0%)
Query: 1 MRTFFPSDSCKESQLNGFNPQSWLQVERGKLSKLSSHNSSSSSIESFIKVPEPRILPNYK 60
MRTFFPS+SCKE+QLN F PQ+WLQVERGKLSKLS H+SSSS IKVPEP ILP +K
Sbjct: 1 MRTFFPSESCKETQLNAFYPQAWLQVERGKLSKLSLHSSSSSIESL-IKVPEPPILPYFK 59
Query: 61 PVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAWQKASTVHEK 120
PVDYVEVLAQIHEELE CP ERS+LYLLQFQVF+GLGE KLMRRSLR AWQKAS VHEK
Sbjct: 60 PVDYVEVLAQIHEELESCPAHERSNLYLLQFQVFRGLGEVKLMRRSLRSAWQKASIVHEK 119
Query: 121 LVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASH--LQTDINVAGSHETVSMSGD 178
L+FGAWLKYEKQGEE+I DLL C+KC QE+GP+DI++ L T ++ ++ + G
Sbjct: 120 LIFGAWLKYEKQGEEIITDLLATCEKCAQEYGPVDISTQFPLDTGVDAGNPYDNCAADGK 179
Query: 179 QVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRII 238
+ ++V F+I++E I CDR+K + LSAPF AMLNG F ES E IDLSENN+SPSG+R I
Sbjct: 180 PISKHVTFKINDEDIVCDREKISGLSAPFHAMLNGCFTESNREVIDLSENNLSPSGMRAI 239
Query: 239 SDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEE 298
+FS TG+L V+P+LLLEILIFANKFCCERLKD CDRKLASL ++REDAVELM YA+EE
Sbjct: 240 REFSNTGNLGEVSPDLLLEILIFANKFCCERLKDDCDRKLASLASTREDAVELMDYALEE 299
Query: 299 NSPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNL 358
+ +LA SCLQ FL +LPDCL+D RVV+IF HANR+ RSIMVG ASFSLYCLLSEV +NL
Sbjct: 300 SCHILAASCLQTFLNDLPDCLSDHRVVDIFMHANREQRSIMVGHASFSLYCLLSEVFINL 359
Query: 359 DPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSI 418
DPRS+ T CFLERL+E AETDRQRL A HQLGCVRLLRKEYDEA+ LFEAA NAGHIYS+
Sbjct: 360 DPRSENTACFLERLVEFAETDRQRLFACHQLGCVRLLRKEYDEAKRLFEAAFNAGHIYSV 419
Query: 419 AGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTL 478
GLARL I G+K W+ + L SVIS+ PLGWMYQERSLYC+ +K+ DL+KAT LDPTL
Sbjct: 420 VGLARLSQINGNKQWSSDSLTSVISTGVPLGWMYQERSLYCDANKKLADLEKATDLDPTL 479
Query: 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAI 538
+YPYMYRA+SLM KQ+V AALAEINRILGFKLALECLELRFCF+LALEDYQAA+CD+QAI
Sbjct: 480 TYPYMYRAASLMRKQDVHAALAEINRILGFKLALECLELRFCFYLALEDYQAAICDIQAI 539
Query: 539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE 598
LTLSPDYRMFEG+ AASQL LVREH+ NWT ADCW+QLYDRWSSVDDIGSLSVIYQMLE
Sbjct: 540 LTLSPDYRMFEGKAAASQLRTLVREHVSNWTTADCWIQLYDRWSSVDDIGSLSVIYQMLE 599
Query: 599 SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGL 658
SDA KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA+S+HERLVYEGWILYDT HCEEGL
Sbjct: 600 SDAAKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHASSEHERLVYEGWILYDTGHCEEGL 659
Query: 659 RKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNL 718
+KAEESI++KRSFEAFFLKAYALADSSQD SCSSTV+SLLEDALKCPSDRLRKGQALNNL
Sbjct: 660 QKAEESIKIKRSFEAFFLKAYALADSSQDPSCSSTVISLLEDALKCPSDRLRKGQALNNL 719
Query: 719 GSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNA 778
GSVYVDCG+LDLAADCY NALKIRHTRAHQGLARVH+L+N+K AYEEMTKLI+KARNNA
Sbjct: 720 GSVYVDCGKLDLAADCYINALKIRHTRAHQGLARVHYLRNDKAAAYEEMTKLIEKARNNA 779
Query: 779 SAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFK 838
SAYEKRSEY DR+LT++DL+MVTQLDPLRVYPYRYRAAVLMDSHK +EAIAELSRAIAFK
Sbjct: 780 SAYEKRSEYGDRDLTKSDLDMVTQLDPLRVYPYRYRAAVLMDSHKVDEAIAELSRAIAFK 839
Query: 839 ADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVYSHEP 889
ADLHLLHLRAAFHEHT DVLGALRDCRAALSVDPN QEMLELHSRV S EP
Sbjct: 840 ADLHLLHLRAAFHEHTNDVLGALRDCRAALSVDPNHQEMLELHSRVNSQEP 890
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449526563|ref|XP_004170283.1| PREDICTED: ETO1-like protein 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1434 bits (3711), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 705/891 (79%), Positives = 785/891 (88%), Gaps = 3/891 (0%)
Query: 1 MRTFFPSDSCKESQLNGFNPQSWLQVERGKLSKLSSHNSSSSSIESFIKVPEPRILPNYK 60
MRTFFPS+SCKE+QLN F PQ+WLQVERGKLSKLS H+SSSS IKVPEP ILP +K
Sbjct: 1 MRTFFPSESCKETQLNAFYPQAWLQVERGKLSKLSLHSSSSSIESL-IKVPEPPILPYFK 59
Query: 61 PVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAWQKASTVHEK 120
PVDYVEVLAQIHEELE CP ERS+LYLLQFQVF+GLGE KLMRRSLR AWQKAS VHEK
Sbjct: 60 PVDYVEVLAQIHEELESCPAHERSNLYLLQFQVFRGLGEVKLMRRSLRSAWQKASIVHEK 119
Query: 121 LVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASH--LQTDINVAGSHETVSMSGD 178
L+FGAWLKYEKQGEE+I DLL C+KC QE+GP+DI++ L T ++ ++ + G
Sbjct: 120 LIFGAWLKYEKQGEEIITDLLATCEKCAQEYGPVDISTQFPLDTGVDAGNPYDNCAADGK 179
Query: 179 QVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRII 238
+ ++V F+I++E I CDR+K + LSAPF AMLNG F ES E IDLSENN+SPSG+R I
Sbjct: 180 PISKHVTFKINDEDIVCDREKISGLSAPFHAMLNGCFTESNREVIDLSENNLSPSGMRAI 239
Query: 239 SDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEE 298
+FS TG+L V+P+LLLEILIFANKFCCERLKD CDRKLASL ++REDAVELM YA+EE
Sbjct: 240 REFSNTGNLGEVSPDLLLEILIFANKFCCERLKDDCDRKLASLASTREDAVELMDYALEE 299
Query: 299 NSPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNL 358
+ +LA SCLQ FL +LPDCL+D RVV+IF HANR+ RSIMVG ASFSLYCLLSEV +NL
Sbjct: 300 SCHILAASCLQTFLNDLPDCLSDHRVVDIFMHANREQRSIMVGHASFSLYCLLSEVFINL 359
Query: 359 DPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSI 418
DPRS+ T CFLERL+E AETDRQRL A HQLGCVRLLRKEYDEA+ LFEAA NAGHIYS+
Sbjct: 360 DPRSENTACFLERLVEFAETDRQRLFACHQLGCVRLLRKEYDEAKRLFEAAFNAGHIYSV 419
Query: 419 AGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTL 478
GLARL I G+K W+ + L SVIS+ PLGWMYQERSLYC+ +K+ DL+KAT LDPTL
Sbjct: 420 VGLARLSQINGNKQWSSDSLTSVISTGVPLGWMYQERSLYCDANKKLADLEKATDLDPTL 479
Query: 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAI 538
+YPYMYRA+SLM KQ+V AAL EINRILGFKLALECLELRFCF+LALEDYQAA+CD+QAI
Sbjct: 480 TYPYMYRAASLMRKQDVHAALTEINRILGFKLALECLELRFCFYLALEDYQAAICDIQAI 539
Query: 539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE 598
LTLSPDYRMFEG+ AASQL LVREH+ NWT ADCW+QLYDRWSSVDDIGSLSVIYQMLE
Sbjct: 540 LTLSPDYRMFEGKAAASQLRTLVREHVSNWTTADCWIQLYDRWSSVDDIGSLSVIYQMLE 599
Query: 599 SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGL 658
SDA KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA+S+HERLVYEGWILYDT HCEEGL
Sbjct: 600 SDAAKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHASSEHERLVYEGWILYDTGHCEEGL 659
Query: 659 RKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNL 718
+KAEESI++KRSFEAFFLKAYALADSSQD SCSSTV+SLLEDALKCPSDRLRKGQALNNL
Sbjct: 660 QKAEESIKIKRSFEAFFLKAYALADSSQDPSCSSTVISLLEDALKCPSDRLRKGQALNNL 719
Query: 719 GSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNA 778
GSVYVDCG+LDLAADCY NALKIRHTRAHQGLARVH+L+N+K AYEEMTKLI+KARNNA
Sbjct: 720 GSVYVDCGKLDLAADCYINALKIRHTRAHQGLARVHYLRNDKAAAYEEMTKLIEKARNNA 779
Query: 779 SAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFK 838
SAYEKRSEY DR+LT++DL+MVTQLDPLRVYPYRYRAAVLMDSHK +EAIAELSRAIAFK
Sbjct: 780 SAYEKRSEYGDRDLTKSDLDMVTQLDPLRVYPYRYRAAVLMDSHKVDEAIAELSRAIAFK 839
Query: 839 ADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVYSHEP 889
ADLHLLHLRAAFHEHT DVLGALRDCRAALSVDPN QEMLELHSRV S EP
Sbjct: 840 ADLHLLHLRAAFHEHTNDVLGALRDCRAALSVDPNHQEMLELHSRVNSQEP 890
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255559841|ref|XP_002520939.1| conserved hypothetical protein [Ricinus communis] gi|223539776|gb|EEF41356.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1428 bits (3697), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 702/851 (82%), Positives = 771/851 (90%), Gaps = 2/851 (0%)
Query: 1 MRTFFPSDSCKESQLNGFNPQSWLQVERGKLSKLSSHNSSSSSIESFIK-VPEPRILPNY 59
M+T F +SCKESQL+ NPQSWLQVERGKLSKLSS +SSSSS + VPEP +LP +
Sbjct: 1 MKTLFLPESCKESQLDALNPQSWLQVERGKLSKLSSCSSSSSSSIDSLIKVPEPPVLPFF 60
Query: 60 KPVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAWQKASTVHE 119
KPVDYVEVLAQIHEELE C QERS+LYLLQFQVF+GLGE KLMRRSLR AWQK+STVHE
Sbjct: 61 KPVDYVEVLAQIHEELESCSPQERSNLYLLQFQVFRGLGEVKLMRRSLRSAWQKSSTVHE 120
Query: 120 KLVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQTDINVAGSHETVSMSGDQ 179
K+VFGAWLKYEKQGEELIADLL C KC QEFGPIDI S L D++ + S ET+ + D
Sbjct: 121 KVVFGAWLKYEKQGEELIADLLATCGKCAQEFGPIDIVSQLHIDLSFSAS-ETILTNADS 179
Query: 180 VLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIIS 239
LRNV+F I +EKI CDR+K + LSAPF AMLNG F+ESLCE+ID SENNISP ++IS
Sbjct: 180 KLRNVIFSIGDEKIVCDRKKISGLSAPFHAMLNGCFLESLCENIDFSENNISPFSFKMIS 239
Query: 240 DFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEEN 299
+FSV GSLN V LLEILIFANKFCCERLKDACDRKLASLV+S+EDAVELM YA++EN
Sbjct: 240 EFSVKGSLNEVPLENLLEILIFANKFCCERLKDACDRKLASLVSSKEDAVELMEYALQEN 299
Query: 300 SPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLD 359
SPVLA SCLQVFL ELPDCLNDERVVEIFSHA +Q R IMVG ASFSLYCLLSEVAMNLD
Sbjct: 300 SPVLAASCLQVFLHELPDCLNDERVVEIFSHAGKQERMIMVGAASFSLYCLLSEVAMNLD 359
Query: 360 PRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIA 419
PRS+KT CFLERL+ESAET+RQ+LLAFHQLGCVRLLRKEYDEAE LFEAA++AGH+YS++
Sbjct: 360 PRSNKTACFLERLVESAETNRQKLLAFHQLGCVRLLRKEYDEAERLFEAALSAGHLYSVS 419
Query: 420 GLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLS 479
GLARLG +KGH+LWAY+KL+SVISSVTPLGWMYQERSLYCEGDK+ EDL KAT LDPTL+
Sbjct: 420 GLARLGCVKGHRLWAYDKLSSVISSVTPLGWMYQERSLYCEGDKKCEDLQKATELDPTLT 479
Query: 480 YPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAIL 539
YPYM+RA+SLM KQNV+AALAEINR+LGFKLALECLELRFCF+LALEDYQAALCDVQAIL
Sbjct: 480 YPYMFRAASLMRKQNVQAALAEINRVLGFKLALECLELRFCFYLALEDYQAALCDVQAIL 539
Query: 540 TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES 599
TLSPDYRMFEGRVAA QL LVREH+ NWT ADCW+QLY+RWSSVDDIGSLSVIYQMLES
Sbjct: 540 TLSPDYRMFEGRVAAFQLRTLVREHVGNWTTADCWIQLYERWSSVDDIGSLSVIYQMLES 599
Query: 600 DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLR 659
+APKGVLYFRQSLLLLRLNCPEAAM+SLQLARQHA+++HERLVYEGWILYDT HCEEGLR
Sbjct: 600 EAPKGVLYFRQSLLLLRLNCPEAAMQSLQLARQHASTEHERLVYEGWILYDTGHCEEGLR 659
Query: 660 KAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLG 719
KAEESI++ RSFEAFFLKAYALADSSQD SCSSTVVSLLEDALKCPSDRLRKGQALNNLG
Sbjct: 660 KAEESIKINRSFEAFFLKAYALADSSQDPSCSSTVVSLLEDALKCPSDRLRKGQALNNLG 719
Query: 720 SVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNAS 779
SVYVDCG+L+LAADCY NALKIRHTRAHQGLARVHFL+N+K AYEEMTKLI+KARNNAS
Sbjct: 720 SVYVDCGKLELAADCYINALKIRHTRAHQGLARVHFLRNDKAAAYEEMTKLIEKARNNAS 779
Query: 780 AYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKA 839
AYEKRSEYCDRELT+ADLEMVT+LDPLRVYPYRYRAAVLMD HKE EAIAELSRAIAFKA
Sbjct: 780 AYEKRSEYCDRELTKADLEMVTKLDPLRVYPYRYRAAVLMDGHKEKEAIAELSRAIAFKA 839
Query: 840 DLHLLHLRAAF 850
DLHLLHL+ +F
Sbjct: 840 DLHLLHLKGSF 850
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|70780055|gb|AAZ08351.1| ethylene overproducer-like 1 [Solanum lycopersicum] | Back alignment and taxonomy information |
|---|
Score = 1416 bits (3665), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 692/889 (77%), Positives = 783/889 (88%), Gaps = 3/889 (0%)
Query: 1 MRTFFPSDSCKESQLNGFNPQSWLQVERGKLSKLSSHNSSSSSIESFIKVPEPRILPNYK 60
MRTFFPS+SCKE+ L NPQSWLQVERGKL+K+SS ++SS S IKVPEP ILP +K
Sbjct: 1 MRTFFPSESCKETHLKSINPQSWLQVERGKLAKISSESASSID--SLIKVPEPPILPFFK 58
Query: 61 PVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAWQKASTVHEK 120
PVDYV+VLA+IHEELE C QERS+LYLLQFQVFKGLGE KLMRRSLR AW KASTV+EK
Sbjct: 59 PVDYVQVLAKIHEELESCSPQERSNLYLLQFQVFKGLGEVKLMRRSLRAAWSKASTVYEK 118
Query: 121 LVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQTDINVAGSHETVSMSGDQV 180
LVFGAWLKYEKQ EELI+DLL +C KC +EFG IDIAS + ++ SH ++ + D
Sbjct: 119 LVFGAWLKYEKQDEELISDLLSSCGKCAKEFGAIDIASEMPAYKKLS-SHGVITTNEDSC 177
Query: 181 LRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISD 240
R V FRI +EKI CDRQK A+LSAPF MLNG F ES CE+IDLSENNISP +R+I++
Sbjct: 178 PRTVSFRIADEKIACDRQKIASLSAPFHTMLNGCFTESFCEEIDLSENNISPLAMRLINE 237
Query: 241 FSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENS 300
FS TG LN V+P+LLLEIL+FANKFCCE LKDACDRKLASL++ R+DA+EL+ A+EENS
Sbjct: 238 FSSTGLLNEVSPDLLLEILVFANKFCCESLKDACDRKLASLISCRQDALELLECALEENS 297
Query: 301 PVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDP 360
PVLA SCLQVFLRELPD L D +VVE+ S+ RQ RSIM+G ASFSLYCLLSEV+MNLDP
Sbjct: 298 PVLAASCLQVFLRELPDSLKDSQVVELLSNTTRQQRSIMIGPASFSLYCLLSEVSMNLDP 357
Query: 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAG 420
RSD++V FL L++SAET +Q+++A+H+LGCV+ LR+E DEAE LFEAA N GH YS+ G
Sbjct: 358 RSDESVRFLRTLVDSAETSQQKMVAYHRLGCVKFLREELDEAEQLFEAAFNLGHTYSVIG 417
Query: 421 LARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSY 480
LARLG I+GHK WAYEKL SVISS PLGWMYQE SLYCEG+KRW+DL+KAT LDPTL+Y
Sbjct: 418 LARLGQIRGHKRWAYEKLGSVISSSIPLGWMYQESSLYCEGEKRWDDLEKATELDPTLTY 477
Query: 481 PYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILT 540
PYMYRA+SLM KQN +AAL+EINRILGFKLALECLELRFCF+LALEDYQ A+CD+QAILT
Sbjct: 478 PYMYRAASLMRKQNAQAALSEINRILGFKLALECLELRFCFYLALEDYQLAICDIQAILT 537
Query: 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD 600
L PDYR+FEGRVAASQL L+REH++NWT ADCWLQLYDRWSSVDDIGSLSVIYQMLESD
Sbjct: 538 LCPDYRVFEGRVAASQLRTLLREHVENWTEADCWLQLYDRWSSVDDIGSLSVIYQMLESD 597
Query: 601 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRK 660
A KGVLYFRQSLLLLRLNCP+AAMRSLQLARQH++S+HERLVYEGWILYDT HCEEGL+K
Sbjct: 598 AAKGVLYFRQSLLLLRLNCPDAAMRSLQLARQHSSSEHERLVYEGWILYDTGHCEEGLQK 657
Query: 661 AEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGS 720
AEESI +KRSFEAFFLKAYALADSS D+SCSSTV+SLLEDAL+CPSDRLRKGQALNNLGS
Sbjct: 658 AEESISIKRSFEAFFLKAYALADSSLDASCSSTVISLLEDALRCPSDRLRKGQALNNLGS 717
Query: 721 VYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASA 780
VYVDCG+LD AADCY NALKIRHTRAHQGLARVHFL+N+K AY+EMTKLI+KA+NNASA
Sbjct: 718 VYVDCGKLDAAADCYINALKIRHTRAHQGLARVHFLRNDKVAAYDEMTKLIEKAKNNASA 777
Query: 781 YEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKAD 840
YEKRSEYCDR+ T+ADLEMVT+LDPLRVYPYRYRAAVLMD+H++ EAI ELSRAIAFKAD
Sbjct: 778 YEKRSEYCDRDRTKADLEMVTRLDPLRVYPYRYRAAVLMDNHQDKEAIEELSRAIAFKAD 837
Query: 841 LHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVYSHEP 889
LHLLHLRAAFHEH GDV+GALRDCRAALSVDP QEMLELHSRV S EP
Sbjct: 838 LHLLHLRAAFHEHIGDVMGALRDCRAALSVDPKHQEMLELHSRVNSQEP 886
|
Source: Solanum lycopersicum Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|350539533|ref|NP_001234175.1| ethylene-overproducer1-like protein [Solanum lycopersicum] gi|78707376|gb|ABB46489.1| ethylene-overproducer1-like protein [Solanum lycopersicum] | Back alignment and taxonomy information |
|---|
Score = 1409 bits (3648), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 690/889 (77%), Positives = 782/889 (87%), Gaps = 3/889 (0%)
Query: 1 MRTFFPSDSCKESQLNGFNPQSWLQVERGKLSKLSSHNSSSSSIESFIKVPEPRILPNYK 60
MRTFFPS+SCKE+ L NPQSWLQVERGKL+K+SS ++SS S IKVPEP ILP +K
Sbjct: 1 MRTFFPSESCKETHLKSINPQSWLQVERGKLAKISSESASSID--SLIKVPEPPILPFFK 58
Query: 61 PVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAWQKASTVHEK 120
PVDYV+VLA+IHEELE C QERS+LYLLQFQVFKGLGE KLMRRSLR AW KASTV+EK
Sbjct: 59 PVDYVQVLAKIHEELESCSPQERSNLYLLQFQVFKGLGEVKLMRRSLRAAWSKASTVYEK 118
Query: 121 LVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQTDINVAGSHETVSMSGDQV 180
LVFGAWLKYEKQ EELI+DLL +C KC +EFG IDIAS + ++ SH ++ + D
Sbjct: 119 LVFGAWLKYEKQDEELISDLLSSCGKCAKEFGAIDIASEMPAYKKLS-SHGVITTNEDSC 177
Query: 181 LRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISD 240
R V FRI +EKI CDRQK A+LSAPF MLNG F ES CE+IDLSENNISP +R+I++
Sbjct: 178 PRTVSFRIADEKIACDRQKIASLSAPFHTMLNGCFTESFCEEIDLSENNISPLAMRLINE 237
Query: 241 FSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENS 300
FS TG LN V+P+LLLEIL+FANKFCCE LKDACDRKLASL++ R+DA+EL+ A+EENS
Sbjct: 238 FSSTGLLNEVSPDLLLEILVFANKFCCESLKDACDRKLASLISCRQDALELLECALEENS 297
Query: 301 PVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDP 360
PVLA SCLQVFLRELPD L D +VVE+ S+ RQ RSIM+G ASFSLYCLLSEV+MNLDP
Sbjct: 298 PVLAASCLQVFLRELPDSLKDSQVVELLSNTTRQQRSIMIGPASFSLYCLLSEVSMNLDP 357
Query: 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAG 420
RSD++V FL L++SAET +Q+++A+H+LGCV+ LR+E DEAE LFEAA N GH YS+ G
Sbjct: 358 RSDESVRFLRTLVDSAETSQQKMVAYHRLGCVKFLREELDEAEQLFEAAFNLGHTYSVIG 417
Query: 421 LARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSY 480
LARLG I+GHK WAYEKL SVISS PLGWMYQE SLYCEG+KRW+DL+KAT LDPTL+Y
Sbjct: 418 LARLGQIRGHKRWAYEKLGSVISSSIPLGWMYQESSLYCEGEKRWDDLEKATELDPTLTY 477
Query: 481 PYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILT 540
PYMYRA+SLM KQN +AAL+EINRILGFKLALECLELRFCF+LALEDYQ A+CD+QAILT
Sbjct: 478 PYMYRAASLMRKQNAQAALSEINRILGFKLALECLELRFCFYLALEDYQLAICDIQAILT 537
Query: 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD 600
L P+YR+FEGRVAASQL L+REH++NWT AD WLQLYDRWSSVDDIGSLSVIYQMLESD
Sbjct: 538 LCPEYRVFEGRVAASQLRTLLREHVENWTEADWWLQLYDRWSSVDDIGSLSVIYQMLESD 597
Query: 601 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRK 660
A KGVLYFRQSLLLLRLNCP+AAMRSLQLARQH++S+HERLVYEGWILYDT HCEEGL+K
Sbjct: 598 AAKGVLYFRQSLLLLRLNCPDAAMRSLQLARQHSSSEHERLVYEGWILYDTGHCEEGLQK 657
Query: 661 AEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGS 720
AEESI +KRSFEAFFLKAYALADSS D+SCSSTV+SLLEDAL+CPSDRLRKGQALNNLGS
Sbjct: 658 AEESISIKRSFEAFFLKAYALADSSLDASCSSTVISLLEDALRCPSDRLRKGQALNNLGS 717
Query: 721 VYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASA 780
VYVDCG+LD AADCY NALKIRHTRAHQGLARVHFL+N+K AY+EMTKLI+KA+NNASA
Sbjct: 718 VYVDCGKLDAAADCYINALKIRHTRAHQGLARVHFLRNDKVAAYDEMTKLIEKAKNNASA 777
Query: 781 YEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKAD 840
Y+KRSEYCDR+ T+ADLEMVT+LDPLRVYPYRYRAAVLMD+HK+ EAI ELSRAIAFKAD
Sbjct: 778 YQKRSEYCDRDRTKADLEMVTRLDPLRVYPYRYRAAVLMDNHKDKEAIEELSRAIAFKAD 837
Query: 841 LHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVYSHEP 889
LHLLHLRAAFHEH GDV+GALRDCRAALSVDP QEMLELHSRV S EP
Sbjct: 838 LHLLHLRAAFHEHIGDVMGALRDCRAALSVDPKHQEMLELHSRVNSQEP 886
|
Source: Solanum lycopersicum Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356572224|ref|XP_003554270.1| PREDICTED: ETO1-like protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1402 bits (3628), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 684/889 (76%), Positives = 765/889 (86%), Gaps = 3/889 (0%)
Query: 1 MRTFFPSDSCKESQLNGFNPQSWLQVERGKLSKLSSHNSSSSSIESFIKVPEPRILPNYK 60
MR+FFP++SCKE+ N NPQSWL +ERGKL KLSSH SS+SIES IKVP+P ILP +K
Sbjct: 1 MRSFFPAESCKEAHPNALNPQSWLHIERGKLPKLSSH-PSSASIESLIKVPQPAILPFFK 59
Query: 61 PVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAWQKASTVHEK 120
PVDYVEVLA+IHEELE CP QERS+L+LLQ+QVF+GLGE KLMRRSL+ AWQ+A TVHEK
Sbjct: 60 PVDYVEVLARIHEELESCPPQERSNLFLLQYQVFRGLGEVKLMRRSLQGAWQRAHTVHEK 119
Query: 121 LVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQTDINVAGSHETVSMSGDQV 180
++FGAWLKYEKQ EEL+ADLL C KC +EF P+DIA HL D+N S E + + +++
Sbjct: 120 IIFGAWLKYEKQEEELMADLLAACGKCAKEFAPVDIAFHLPFDVN--ASSEGRTTNENRI 177
Query: 181 LRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISD 240
+NV F I EKI CDRQK + LSAPF AML G F ESL E IDLSENNISPSG++ ISD
Sbjct: 178 SQNVTFTIGSEKIVCDRQKISELSAPFHAMLKGHFSESLSETIDLSENNISPSGMKAISD 237
Query: 241 FSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENS 300
FS+ GSL V PNLLLEIL+FANK+CCERLKDACDR+LASLV+S+EDAVELM YA++E+S
Sbjct: 238 FSLNGSLIEVPPNLLLEILVFANKYCCERLKDACDRRLASLVSSKEDAVELMEYALDEHS 297
Query: 301 PVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDP 360
VLA SCLQV LR+LP+C+ND RVVEIF HAN+Q +MVG F+L+C LSEV+MNL+
Sbjct: 298 SVLAASCLQVLLRDLPNCMNDNRVVEIFVHANKQQLEVMVGPGIFALFCFLSEVSMNLNS 357
Query: 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAG 420
SD T FLERL+E AE +QRLLA HQLGCVRLLRKEYDEA LFE AVNAGH+YS+AG
Sbjct: 358 SSDTTAHFLERLVEFAENGKQRLLALHQLGCVRLLRKEYDEARCLFEGAVNAGHMYSVAG 417
Query: 421 LARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSY 480
LARL YIKG KL +Y +L+SVISSVT LGWMYQERSLYC+GDKRWEDL+KA+ LDPTL Y
Sbjct: 418 LARLDYIKGDKLLSYGQLSSVISSVTSLGWMYQERSLYCDGDKRWEDLEKASNLDPTLIY 477
Query: 481 PYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILT 540
PYMYRA++LM QN AALAEINRILGFKL+LECLE+RF L+LEDY+AALCDVQ ILT
Sbjct: 478 PYMYRAATLMRTQNAHAALAEINRILGFKLSLECLEIRFFIHLSLEDYKAALCDVQTILT 537
Query: 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD 600
L DYRMFEGRVAASQL LVREH++ WT ADCW +LYD WS+VDDIGSLSVIYQMLESD
Sbjct: 538 LRSDYRMFEGRVAASQLCTLVREHVERWTTADCWARLYDCWSAVDDIGSLSVIYQMLESD 597
Query: 601 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRK 660
A KG+LYFRQSLLLLRLNCPEAAMRSL LARQHA+S+HERLVYEGWILYDT H EEGL+K
Sbjct: 598 AAKGILYFRQSLLLLRLNCPEAAMRSLLLARQHASSEHERLVYEGWILYDTGHYEEGLQK 657
Query: 661 AEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGS 720
AEESI +KRSFEAFFLKAYALADSS D SCS TV+SLLEDALKCPSD LRKGQALNNLGS
Sbjct: 658 AEESIDIKRSFEAFFLKAYALADSSIDPSCSPTVISLLEDALKCPSDNLRKGQALNNLGS 717
Query: 721 VYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASA 780
VYVDCG+LDLAADCY NALKIRHTRAH GLARVH LKN+K AY EMT+LIKKA+NNASA
Sbjct: 718 VYVDCGKLDLAADCYINALKIRHTRAHHGLARVHCLKNDKAAAYMEMTELIKKAKNNASA 777
Query: 781 YEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKAD 840
YEKRSEYCDRE +ADLEMVT+LDPLR YPYRYRAAVLMD+HKE EAIAELSRAIAFKAD
Sbjct: 778 YEKRSEYCDREQAKADLEMVTRLDPLRAYPYRYRAAVLMDNHKEEEAIAELSRAIAFKAD 837
Query: 841 LHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVYSHEP 889
LHLLHLRAAFHEH DVLGALRDCRAALSVDPN QEMLELHSRV HEP
Sbjct: 838 LHLLHLRAAFHEHKEDVLGALRDCRAALSVDPNHQEMLELHSRVNRHEP 886
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356504961|ref|XP_003521261.1| PREDICTED: ETO1-like protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1389 bits (3596), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 689/890 (77%), Positives = 765/890 (85%), Gaps = 3/890 (0%)
Query: 1 MRTFFPSDSCKESQLNGFNPQSWLQVERGKLSKLSSHNSSSSS-IESFIKVPEPRILPNY 59
MR+FFP++SCKE+ N NPQSWLQ+ERGKL KLSS + SS+ IES IKVP+P ILP +
Sbjct: 1 MRSFFPAESCKEAHPNALNPQSWLQIERGKLPKLSSSSHPSSASIESLIKVPQPAILPFF 60
Query: 60 KPVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAWQKASTVHE 119
KPVDYVEVLAQIHEELE CP QERS+L+LLQ+QVF+GLGE KLMRRSL+ AWQ+A TVHE
Sbjct: 61 KPVDYVEVLAQIHEELESCPPQERSNLFLLQYQVFRGLGEVKLMRRSLQGAWQRAHTVHE 120
Query: 120 KLVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQTDINVAGSHETVSMSGDQ 179
K++FGAWLKYEKQ EELIADLL C KC +EF P+DIAS L D+N AGS E + + +
Sbjct: 121 KIIFGAWLKYEKQEEELIADLLAACGKCAKEFAPVDIASLLPFDVN-AGS-EGRTTNENC 178
Query: 180 VLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIIS 239
+ +NV F I EKI C+RQK + LSAPF AML G F ESL E IDLSENNISPSG++ IS
Sbjct: 179 ISQNVTFTIGSEKIICERQKISELSAPFRAMLKGHFSESLSETIDLSENNISPSGMKAIS 238
Query: 240 DFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEEN 299
DFS+ GSL V PNLLLEIL+FANK+CCERLKDACDR+LASLV+S+EDAVELM YA++E+
Sbjct: 239 DFSLNGSLIEVLPNLLLEILVFANKYCCERLKDACDRRLASLVSSKEDAVELMEYALDEH 298
Query: 300 SPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLD 359
S VLA SCLQV LR+LP+CLND RVVEIF HAN+Q ++MVG F+L+C L EV+MNL+
Sbjct: 299 STVLAASCLQVLLRDLPNCLNDNRVVEIFVHANKQQLAVMVGPGIFTLFCFLGEVSMNLN 358
Query: 360 PRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIA 419
SD T LERL+E AE D+QRLLA HQLGCVRLLRKEYDEA LFE AVNAGHIYS+A
Sbjct: 359 SSSDTTAHILERLVEFAENDQQRLLALHQLGCVRLLRKEYDEARCLFEGAVNAGHIYSVA 418
Query: 420 GLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLS 479
GLARL YIKG KL +Y +LNSVISSVTPLGWMYQERSLYC+GDKRWEDL+KA+ LDPTL
Sbjct: 419 GLARLDYIKGDKLLSYGQLNSVISSVTPLGWMYQERSLYCDGDKRWEDLEKASNLDPTLI 478
Query: 480 YPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAIL 539
YPY YRA+SLM QN +AALAEINRILGFKL+ ECLE+RF L+LEDY+AALCDVQ IL
Sbjct: 479 YPYTYRAASLMRTQNAQAALAEINRILGFKLSPECLEVRFFIHLSLEDYKAALCDVQTIL 538
Query: 540 TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES 599
TL DYRMFEGRVAASQL LVREH++ WT ADCW +LYD WS+VDDIGSLSVIYQMLES
Sbjct: 539 TLRSDYRMFEGRVAASQLCTLVREHVERWTTADCWARLYDCWSAVDDIGSLSVIYQMLES 598
Query: 600 DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLR 659
DA KG+LYFRQSLLLLRLNCPEAAMRSLQLARQHA+S+HERLVYEGWILYDT H EEGL
Sbjct: 599 DAAKGILYFRQSLLLLRLNCPEAAMRSLQLARQHASSEHERLVYEGWILYDTGHYEEGLW 658
Query: 660 KAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLG 719
KAEESI +KRSFEAFFLKAYALADSS D SCS TV+SLLEDALKCPSD LRKGQALNNLG
Sbjct: 659 KAEESINIKRSFEAFFLKAYALADSSIDPSCSPTVISLLEDALKCPSDNLRKGQALNNLG 718
Query: 720 SVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNAS 779
SVYVDCG+LDLAADCY NALKIRHTRAH GLARVH LKN+K AY EMT+LIKKA+NNAS
Sbjct: 719 SVYVDCGKLDLAADCYINALKIRHTRAHHGLARVHCLKNDKAAAYMEMTELIKKAKNNAS 778
Query: 780 AYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKA 839
AYEKRSEYCDRE + DLEMVT+LDPLRVYPYRYRAAVLMD HKE EAIAELSRAIAFKA
Sbjct: 779 AYEKRSEYCDREQAKEDLEMVTRLDPLRVYPYRYRAAVLMDDHKEEEAIAELSRAIAFKA 838
Query: 840 DLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVYSHEP 889
DLHLLHLRAAFHEH DVLGALRDCRAALSVDPN QEMLELHSRV HEP
Sbjct: 839 DLHLLHLRAAFHEHKEDVLGALRDCRAALSVDPNHQEMLELHSRVNRHEP 888
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224082686|ref|XP_002306795.1| predicted protein [Populus trichocarpa] gi|222856244|gb|EEE93791.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1365 bits (3533), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 658/788 (83%), Positives = 725/788 (92%), Gaps = 2/788 (0%)
Query: 103 MRRSLRKAWQKASTVHEKLVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQT 162
MRRSLR AW K STVHEKLVFGAWLK+E+QGEELI+DLL C KC QE G ID++S L
Sbjct: 1 MRRSLRSAWLKGSTVHEKLVFGAWLKFERQGEELISDLLATCGKCAQESGQIDVSSDLDI 60
Query: 163 DINVAGSHETVSM-SGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCE 221
DI+ + S ETVSM +G +LR+V F+I +EKI CDRQK A+LSAPF AMLNG F ESLCE
Sbjct: 61 DIS-SSSRETVSMMNGSHILRSVSFKIGDEKIVCDRQKIASLSAPFHAMLNGCFSESLCE 119
Query: 222 DIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASL 281
IDLSENNISP G R IS+FS+TGSLN +PN+LLE+LIFANKFCCERLKDACDRKLASL
Sbjct: 120 HIDLSENNISPLGFRAISEFSITGSLNEESPNVLLEMLIFANKFCCERLKDACDRKLASL 179
Query: 282 VASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVG 341
V+SR+DAVELM A+EENSPVLA SCLQVFL++LPDCLND+RVVEIFSHAN+Q + IMVG
Sbjct: 180 VSSRDDAVELMECALEENSPVLAASCLQVFLQDLPDCLNDDRVVEIFSHANKQEKMIMVG 239
Query: 342 LASFSLYCLLSEVAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDE 401
ASFSLYCLLSEVAMNLDP+SDKT CFL++L+ESA+T+RQ+LLAFHQLGCVRLLRKEYDE
Sbjct: 240 PASFSLYCLLSEVAMNLDPQSDKTACFLDQLVESAQTNRQKLLAFHQLGCVRLLRKEYDE 299
Query: 402 AEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEG 461
AE LFEAA+NAGHIYS++GLARLG I+GH+LWA++KL+SVISS TPLGWMY ERSL CEG
Sbjct: 300 AERLFEAALNAGHIYSVSGLARLGRIRGHRLWAFDKLSSVISSGTPLGWMYLERSLCCEG 359
Query: 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCF 521
DKRWEDL+KAT LDPTL+YPYMYRA++LM +QNV+AALAEINRILGFKLALECLELRFCF
Sbjct: 360 DKRWEDLEKATELDPTLTYPYMYRAAALMRRQNVQAALAEINRILGFKLALECLELRFCF 419
Query: 522 FLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRW 581
+LALE+YQAA+CDVQAILTLSPDYRMFEGRVAASQL LVREH++NWT ADCWLQLYDRW
Sbjct: 420 YLALENYQAAICDVQAILTLSPDYRMFEGRVAASQLRTLVREHVENWTTADCWLQLYDRW 479
Query: 582 SSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERL 641
SSVDD GSLSVIYQMLESDA KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA+++HERL
Sbjct: 480 SSVDDTGSLSVIYQMLESDAAKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHASTEHERL 539
Query: 642 VYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDA 701
VYEGWILYDT HC EGL+KAEESI +K+SFEAFFLKAYALADSS D SCSSTV+SLLE+A
Sbjct: 540 VYEGWILYDTGHCNEGLQKAEESINIKKSFEAFFLKAYALADSSLDPSCSSTVISLLEEA 599
Query: 702 LKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKT 761
LKCPSDRLRKGQALNNLGSVYVDCG+LDLAADCY NALKIRHTRAHQGLARVHFL+N KT
Sbjct: 600 LKCPSDRLRKGQALNNLGSVYVDCGKLDLAADCYINALKIRHTRAHQGLARVHFLRNEKT 659
Query: 762 TAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDS 821
AYEEMTKLI+KA+NNASAYEKRSEYCDRELT+ADLEMVTQLDPLRVYPYRYRAAVLMDS
Sbjct: 660 AAYEEMTKLIEKAQNNASAYEKRSEYCDRELTKADLEMVTQLDPLRVYPYRYRAAVLMDS 719
Query: 822 HKENEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELH 881
HKE EAIAELSRAI FKADLHLLHLRAAFHEHTGDVL ALRDCRAALSVDPN +EMLELH
Sbjct: 720 HKEKEAIAELSRAIVFKADLHLLHLRAAFHEHTGDVLAALRDCRAALSVDPNHREMLELH 779
Query: 882 SRVYSHEP 889
+RV SHEP
Sbjct: 780 NRVNSHEP 787
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356500164|ref|XP_003518903.1| PREDICTED: ETO1-like protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1340 bits (3468), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 677/889 (76%), Positives = 767/889 (86%), Gaps = 3/889 (0%)
Query: 1 MRTFFPSDSCKESQLNGFNPQSWLQVERGKLSKLSSHNSSSSSIESFIKVPEPRILPNYK 60
MRTFF ++SCKE+Q N NPQSWLQVERGKL KLSS SSS+SIES IKVP+ ILP +K
Sbjct: 1 MRTFFTAESCKETQPNALNPQSWLQVERGKLPKLSS-QSSSASIESLIKVPQSPILPFFK 59
Query: 61 PVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAWQKASTVHEK 120
PVDYVEVLAQIHEELE CP QE+S+L+LLQ+QVFKGLG+ KLMRRSLR AWQ+A+TVHEK
Sbjct: 60 PVDYVEVLAQIHEELESCPPQEKSNLFLLQYQVFKGLGDVKLMRRSLRSAWQRANTVHEK 119
Query: 121 LVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQTDINVAGSHETVSMSGDQV 180
++FGAWLKYEKQ EEL+A LL C KC +EFGPID+ S + D NV S + SM+G+
Sbjct: 120 IIFGAWLKYEKQ-EELVAQLLTACGKCEKEFGPIDVESQIPFDENVR-SQDRASMNGNNA 177
Query: 181 LRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISD 240
V+F+I +EKI CDRQK + LSAPF AML G F ESL E IDLSENN+SPSG+R IS
Sbjct: 178 SEYVIFKIGDEKIVCDRQKISELSAPFHAMLKGCFRESLSETIDLSENNLSPSGMRAISY 237
Query: 241 FSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENS 300
FS TGSL V PNLL+EIL FANK+CCERLK ACDR+LASLV+SREDA+ELM YA+++NS
Sbjct: 238 FSSTGSLLDVPPNLLVEILAFANKYCCERLKQACDRRLASLVSSREDALELMEYAVDQNS 297
Query: 301 PVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDP 360
LA SCLQV LR++P+CL+D +VVE+F HAN+Q ++MVG F+L+C LSEV+MNL+
Sbjct: 298 AGLAASCLQVLLRDIPNCLSDNQVVELFIHANKQQLAVMVGPGIFALFCFLSEVSMNLNS 357
Query: 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAG 420
SD T FLERL++ AE D+QRLLAFHQLGCVRL RKEYDEA LFE A+N GH+YS+AG
Sbjct: 358 SSDTTAHFLERLVDFAENDKQRLLAFHQLGCVRLSRKEYDEAYCLFERALNVGHVYSVAG 417
Query: 421 LARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSY 480
LARL IKG KL +YEK++SVISS TPLGWMYQERSLYC+GD R +DL+KAT LDPTL Y
Sbjct: 418 LARLDSIKGEKLLSYEKISSVISSDTPLGWMYQERSLYCDGDLRQKDLEKATELDPTLIY 477
Query: 481 PYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILT 540
PYMYR +SLM NV+ ALAEINRILGFKL+LECLELRF +LALEDY+AA+ DVQAILT
Sbjct: 478 PYMYRTASLMKTGNVQGALAEINRILGFKLSLECLELRFFIYLALEDYKAAVRDVQAILT 537
Query: 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD 600
L P Y+MFEGRVAASQL LVREH+++WT ADCW +LYD WS+VDDI SLSVIYQMLESD
Sbjct: 538 LCPSYKMFEGRVAASQLCTLVREHVEHWTTADCWARLYDCWSAVDDIESLSVIYQMLESD 597
Query: 601 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRK 660
A KGVLYFRQSLLLLRLNCPEAAMRSLQLA QHA+S+HERLVYEGWILYDT HCEEGL+K
Sbjct: 598 AAKGVLYFRQSLLLLRLNCPEAAMRSLQLAWQHASSEHERLVYEGWILYDTGHCEEGLQK 657
Query: 661 AEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGS 720
AEESI +KRSFEA+FLKAYALADSS DSSCSSTV+SLLEDAL+CPSD LRKGQALNNLGS
Sbjct: 658 AEESISIKRSFEAYFLKAYALADSSVDSSCSSTVISLLEDALRCPSDNLRKGQALNNLGS 717
Query: 721 VYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASA 780
VYVDCG+LDLA DCY ALKI+HTRAHQGLARVHFLKN+K AY+EMT LI+KARNNASA
Sbjct: 718 VYVDCGKLDLAEDCYIKALKIQHTRAHQGLARVHFLKNDKAAAYKEMTNLIEKARNNASA 777
Query: 781 YEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKAD 840
YEKRSEY DR+LT+ADLEMVT+LDPLRVYPYRYRAAVLMD+HKE EAIAELSRAIAFKAD
Sbjct: 778 YEKRSEYGDRDLTKADLEMVTRLDPLRVYPYRYRAAVLMDNHKEEEAIAELSRAIAFKAD 837
Query: 841 LHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVYSHEP 889
LHLLHLRAAFHEH GDVLGALRDCRAALSVDPN Q+MLELH RV SHEP
Sbjct: 838 LHLLHLRAAFHEHNGDVLGALRDCRAALSVDPNHQKMLELHCRVNSHEP 886
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 889 | ||||||
| TAIR|locus:2132402 | 888 | EOL1 "ETO1-like 1" [Arabidopsi | 0.996 | 0.997 | 0.712 | 0.0 | |
| TAIR|locus:2074343 | 959 | ETO1 "ETHYLENE OVERPRODUCER 1" | 0.940 | 0.871 | 0.510 | 7.4e-222 | |
| WB|WBGene00003132 | 788 | mat-1 [Caenorhabditis elegans | 0.197 | 0.223 | 0.276 | 0.00066 |
| TAIR|locus:2132402 EOL1 "ETO1-like 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3301 (1167.1 bits), Expect = 0., P = 0.
Identities = 635/891 (71%), Positives = 732/891 (82%)
Query: 1 MRTFFPSDSCKESQLNGFNPQSWLQVERGKLXXXXXXXXXXXXXXXFIKVPEPRILPNYK 60
MRTF+PSDSCKESQL+ NPQSWLQVERGKL FIKVPEP+ILP+YK
Sbjct: 1 MRTFYPSDSCKESQLDSLNPQSWLQVERGKLSSSASSSAPLCRES-FIKVPEPQILPHYK 59
Query: 61 PVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAWQKASTVHEK 120
P+DYVEVLAQIHEEL+ CPLQERS LYLLQ+QVF+GLGE KL RRSL+ AWQ+A+TVHEK
Sbjct: 60 PLDYVEVLAQIHEELDTCPLQERSILYLLQYQVFRGLGETKLRRRSLQSAWQEATTVHEK 119
Query: 121 LVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQTDINVAGSHETVSMSGDQ- 179
+VFG+WL+YEKQGEE+I DLL +C K +EF P+DIAS+ A S E S+ ++
Sbjct: 120 VVFGSWLRYEKQGEEVITDLLSSCGKYSEEFVPLDIASYFPA--TTASSPEAASVKTNRS 177
Query: 180 VLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIIS 239
V +NVVF+I EEKI C R+K A+LSAPF AML G+F ESL ++ID+SEN++S S +R++
Sbjct: 178 VSKNVVFKIGEEKIACQRRKIASLSAPFHAMLYGNFTESLLDEIDMSENHVSSSAMRVVR 237
Query: 240 DFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEEN 299
DFSV G L GV+ NLLLE+L+FANKFCCERLKDACDR+LASL++S E A+ELM +A+EEN
Sbjct: 238 DFSVVGVLIGVSKNLLLEVLVFANKFCCERLKDACDRELASLISSMECAIELMDFALEEN 297
Query: 300 SPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLD 359
SP+LA SCLQVFL E+PD LNDERVVE+ + NR S M G A FSLY LSEV+M +D
Sbjct: 298 SPILASSCLQVFLYEMPDSLNDERVVEVLTRVNRSQVSTMAGKAPFSLYSCLSEVSMCID 357
Query: 360 PRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIA 419
PRSD+T+ FLE+L++ AE DRQ++L FH+LGC+RLLRKEY EAE FE A N GH+YS
Sbjct: 358 PRSDRTLGFLEKLVDFAENDRQQVLGFHRLGCMRLLRKEYREAEEAFETAFNLGHVYSAT 417
Query: 420 GLARLGYIKGHKLWAYEKLNSVISSVTP-LGWMYQERSLYCEGDKRWEDLDKATALDPTL 478
GLARLGYI+GH+LWAYEKL+SVISSV+P LGWMYQERS YCEGDK+ EDL+KAT LDPTL
Sbjct: 418 GLARLGYIQGHRLWAYEKLSSVISSVSPPLGWMYQERSFYCEGDKKLEDLEKATELDPTL 477
Query: 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKXXXXXXXXXXXXXXXXXDYQAALCDVQAI 538
+YPYMYRA + M+KQN +AAL EINRILGFK DY+AAL D+QA
Sbjct: 478 TYPYMYRAVTRMSKQNAKAALEEINRILGFKLALECLEIRFCLYLGMDDYEAALRDIQAA 537
Query: 539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE 598
LTL PDYRMF+G+VA QL LV EH++NWT ADCW+QLY++WS+VDDIGSLSVIYQMLE
Sbjct: 538 LTLCPDYRMFDGKVAGRQLQTLVYEHVENWTTADCWMQLYEKWSNVDDIGSLSVIYQMLE 597
Query: 599 SDAPKGVLYFRQSXXXXXXNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGL 658
SDA KGVLYFRQS NCPEAAMRSLQLAR+HA+SDHERLVYEGWILYDT HCEEGL
Sbjct: 598 SDACKGVLYFRQSLLLLRLNCPEAAMRSLQLAREHASSDHERLVYEGWILYDTGHCEEGL 657
Query: 659 RKAEESIQMKRSFEAFFLKAYALAXXXXXXXXXXXXXXLLEDALKCPSDRLRKGQALNNL 718
+KA+ESI +KRSFEA+FL+AYALA LLEDALKCPSDRLRKGQALNNL
Sbjct: 658 QKAKESIGIKRSFEAYFLQAYALAESSLDPSSSSTVVSLLEDALKCPSDRLRKGQALNNL 717
Query: 719 GSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNA 778
GSVYVDC +LDLAADCY NALK+RHTRAHQGLARVHFL+N+K AYEEMT+LI+KA+NNA
Sbjct: 718 GSVYVDCEKLDLAADCYINALKVRHTRAHQGLARVHFLRNDKAAAYEEMTRLIEKAQNNA 777
Query: 779 SAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFK 838
SAYEKRSEYCDREL ++DLEMVT+LDPLRVYPYRYRAAVLMDS KE EAI ELSRAIAFK
Sbjct: 778 SAYEKRSEYCDRELAKSDLEMVTRLDPLRVYPYRYRAAVLMDSRKEREAITELSRAIAFK 837
Query: 839 ADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVYSHEP 889
ADLHLLHLRAAFHEH GDV ALRDCRAALSVDPN QEMLELHSRV SHEP
Sbjct: 838 ADLHLLHLRAAFHEHIGDVTSALRDCRAALSVDPNHQEMLELHSRVNSHEP 888
|
|
| TAIR|locus:2074343 ETO1 "ETHYLENE OVERPRODUCER 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2126 (753.4 bits), Expect = 7.4e-222, Sum P(2) = 7.4e-222
Identities = 433/849 (51%), Positives = 572/849 (67%)
Query: 52 EPRILPNYKPVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAW 111
EP+I P K VD VE +AQ++ +E C E+S YL Q +F+G+ + KL RRSLR +
Sbjct: 109 EPQIDPCLKFVDLVEKMAQVYRRIENCSQFEKSGAYLEQCAIFRGISDPKLFRRSLRSSR 168
Query: 112 QKASTVHEKLVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQTD-----INV 166
Q A VH K+V +WL++E++ +ELI ++C E + S +
Sbjct: 169 QHAVDVHAKVVLASWLRFERREDELIGTTSMDCCGRNLECPKATLVSGYDPESVYDPCVC 228
Query: 167 AGSHETVSMSGDQ------VLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLC 220
+G+ + M+ D+ V ++ F I +E++ C R K A+LS PF AML G F E
Sbjct: 229 SGASRSEMMNEDECSTSQEVDYDMSFCIGDEEVRCVRYKIASLSRPFKAMLYGGFREMKR 288
Query: 221 EDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLAS 280
I+ ++N IS G+R FS T L+ PN++LE+L AN+FCC+ LK ACD LA
Sbjct: 289 ATINFTQNGISVEGMRAAEIFSRTNRLDNFPPNVVLELLKLANRFCCDELKSACDSHLAH 348
Query: 281 LVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMV 340
LV S ++A+ L+ Y +EE + +L +CLQVFLRELP +++ V++IF A + R +
Sbjct: 349 LVNSLDEAMLLIEYGLEEAAYLLVAACLQVFLRELPSSMHNPNVIKIFCSAEGRERLASL 408
Query: 341 GLASFSLYCLLSEVAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYD 400
G ASF+LY LS++AM D +S+ TV LERL+E A ++ LA+HQLG V L RKEY
Sbjct: 409 GHASFTLYFFLSQIAMEDDMKSNTTVMLLERLVECAVDSWEKQLAYHQLGVVMLERKEYK 468
Query: 401 EAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCE 460
+A+ F AAV AGH+YS+ G+AR + + H+ AY+ +NS+IS GWM+QERSLYC
Sbjct: 469 DAQRWFNAAVEAGHLYSLVGVARTKFKRDHRYSAYKIINSLISDHKATGWMHQERSLYCS 528
Query: 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKXXXXXXXXXXX 520
G ++ DLD AT DPTL++PY +RA +L+ + AA+AE+N+ILGFK
Sbjct: 529 GKEKLLDLDTATEFDPTLTFPYKFRAVALVEENQFGAAIAELNKILGFKASPDCLEMRAW 588
Query: 521 XXXXXXDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDR 580
DY+ AL D++A+LTL P++ MF ++ + L+R W+ ADCW+QLYDR
Sbjct: 589 ISIGMEDYEGALKDIRALLTLEPNFMMFNWKIHGDHMVELLRPLAQQWSQADCWMQLYDR 648
Query: 581 WSSVDDIGSLSVIYQMLESDAPKGVLYFRQSXXXXXXNCPEAAMRSLQLARQHAASDHER 640
WSSVDDIGSL+V++ ML +D K +L FRQS NC +AAMRSL+LAR H+ S+HER
Sbjct: 649 WSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNCQKAAMRSLRLARNHSKSEHER 708
Query: 641 LVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALAXXXXXXXXXXXXXXLLED 700
LVYEGWILYDT H EE L KAEESI ++RSFEAFFLKAYALA LL++
Sbjct: 709 LVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSTLDPDSSNYVIQLLQE 768
Query: 701 ALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNK 760
ALKCPSD LRKGQALNNLGSVYVDC +LDLAADCY+NAL I+HTRAHQGLARV+ LKN +
Sbjct: 769 ALKCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYTNALTIKHTRAHQGLARVYHLKNQR 828
Query: 761 TTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMD 820
AY+EMTKLI+KA+NNASAYEKRSEYCDRE+ ++DL + TQLDPLR YPYRYRAAVLMD
Sbjct: 829 KAAYDEMTKLIEKAQNNASAYEKRSEYCDREMAQSDLCLATQLDPLRTYPYRYRAAVLMD 888
Query: 821 SHKENEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLEL 880
HKE+EAI ELSRAI+FK DL LLHLRAAF++ G+ A++DC AAL +DP + LEL
Sbjct: 889 DHKESEAIDELSRAISFKPDLQLLHLRAAFYDSMGEGASAIKDCEAALCIDPGHADTLEL 948
Query: 881 HSRVYSHEP 889
+ + + EP
Sbjct: 949 YHK--AREP 955
|
|
| WB|WBGene00003132 mat-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 124 (48.7 bits), Expect = 0.00066, P = 0.00066
Identities = 52/188 (27%), Positives = 79/188 (42%)
Query: 710 RKGQALNNLGSVYVDCGQLDLAADCYSNALKI--RHTRAHQGLARVHFLKNNKTTAYEEM 767
R A LG + +LD AA + +AL + R RA GL VH K TA +
Sbjct: 593 RFAYAYTLLGHELIVQDELDKAAGSFRSALLLSPRDYRAWYGLGLVHLKKEQNLTALTNI 652
Query: 768 TKLIK-KARNNA-----SAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDS 821
K + N A S E++ D L D + L+PL V R+ +L ++
Sbjct: 653 QKAVNINPTNRAMLCTLSQIEQQRGQIDTALVLIDRALT--LNPLDVACRFNRSRLLFEA 710
Query: 822 HKENEAIAELSRAIAFKAD-LHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLEL 880
++ E + EL + A D + HL A H G+ AL + A +DP ++ +
Sbjct: 711 NRNEECLVELDKLKASSPDEAFIFHLLARVHRRMGNTHLALLNYSWAAELDPRGEQNIT- 769
Query: 881 HSRVYSHE 888
S V + E
Sbjct: 770 DSNVINRE 777
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.135 0.400 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 889 837 0.00080 122 3 11 22 0.36 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 3
No. of states in DFA: 625 (66 KB)
Total size of DFA: 437 KB (2207 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 65.54u 0.14s 65.68t Elapsed: 00:00:03
Total cpu time: 65.55u 0.14s 65.69t Elapsed: 00:00:03
Start: Tue May 21 00:18:52 2013 End: Tue May 21 00:18:55 2013
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9ZQX6 | ETOL1_ARATH | No assigned EC number | 0.7474 | 0.9966 | 0.9977 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 889 | |||
| smart00225 | 97 | smart00225, BTB, Broad-Complex, Tramtrack and Bric | 2e-06 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 5e-05 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 2e-04 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 9e-04 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 0.001 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 0.003 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 0.004 |
| >gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-06
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Query: 183 NVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFS 242
+V + +K + AA S F A+ + F ES +I L + +SP R + +F
Sbjct: 1 DVTLVVGGKKFHAHKAVLAAHSPYFKALFSSDFKESDKSEIYLDD--VSPEDFRALLNFL 58
Query: 243 VTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASL 281
TG L+ + + E+L A+ L + C+ L L
Sbjct: 59 YTGKLD-LPEENVEELLELADYLQIPGLVELCEEFLLKL 96
|
Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures. Length = 97 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 5e-05
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 713 QALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKL 770
+AL NLG++Y G D A + Y AL++ + A+ LA ++ A E+ K
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 771 IKKARNNASAY 781
++ +NA AY
Sbjct: 61 LELDPDNAKAY 71
|
Length = 100 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-04
Identities = 77/431 (17%), Positives = 143/431 (33%), Gaps = 52/431 (12%)
Query: 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAA--VNAGHIYSI 418
+ DK + ++L + + + LG + L + + +A FE A + +
Sbjct: 446 QFDKALAAAKKLEKKQPDNA---SLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAA 502
Query: 419 AGLARLGYIKGHKLWA---YEKLNSVISSVTPLGWMYQERSLYC-----EGDKRWEDLDK 470
A LAR+ +G+ A +EK+ + L + LY E W L+K
Sbjct: 503 ANLARIDIQEGNPDDAIQRFEKV--LTIDPKNLRAILALAGLYLRTGNEEEAVAW--LEK 558
Query: 471 ATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILG-FKLALECLELRFCFFLALEDYQ 529
A L+P P + A + K ++ ALA +N + E + LA D
Sbjct: 559 AAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLN 618
Query: 530 AALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 589
A+ + +L L PD + +A + + +
Sbjct: 619 KAVSSFKKLLALQPDSALALLLLADAY------------------------AVMKNYAKA 654
Query: 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILY 649
++ + + LE + LLL E+A + + ++ EG +
Sbjct: 655 ITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYL 714
Query: 650 DTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRL 709
++ ++++ S + AL S ++ V LE LK
Sbjct: 715 RQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGN----TAEAVKTLEAWLK---THP 767
Query: 710 RKGQALNNLGSVYVDCGQLDLAADCYSNALKI--RHTRAHQGLARVHFLKNNKTTAYEEM 767
L +Y+ D A Y +K + LA + +L+ A E
Sbjct: 768 NDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWL-YLELKDPRALEYA 826
Query: 768 TKLIKKARNNA 778
+ +K A N
Sbjct: 827 ERALKLAPNIP 837
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 9e-04
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 713 QALNNLGSVYVDCGQLDLAADCYSNALKI--RHTRAHQGLARVHFLKNNKTT-AYEEMTK 769
+AL NLG+ G D A + Y AL++ + A+ LA + A E++ K
Sbjct: 4 EALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEK 63
Query: 770 LIK 772
++
Sbjct: 64 ALE 66
|
Length = 69 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.001
Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 811 YRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHL-RAAFHEHTG-DVLGALRDCRAAL 868
+ L +EAI +A+ D + A + G D AL D AL
Sbjct: 6 LKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKAL 65
Query: 869 SVDP 872
+DP
Sbjct: 66 ELDP 69
|
Length = 69 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.003
Identities = 40/198 (20%), Positives = 71/198 (35%), Gaps = 16/198 (8%)
Query: 698 LEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI--RHTRAHQGLARVHF 755
E AL D A NL + + G D A + L I ++ RA LA ++
Sbjct: 488 FEKALSIEPDFF---PAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYL 544
Query: 756 LKNNK-------TTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRV 808
N+ A E + I+ A A Y + + + L + D
Sbjct: 545 RTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQ-LKKALAILNEAADAAPDSPEA 603
Query: 809 YPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLRAAF-HEHTGDVLGALRDCRAA 867
+ RA L N+A++ + +A + D L L A + + A+ + A
Sbjct: 604 WLMLGRAQ-LAAG-DLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRA 661
Query: 868 LSVDPNDQEMLELHSRVY 885
L + P++ E +++
Sbjct: 662 LELKPDNTEAQIGLAQLL 679
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 37.4 bits (87), Expect = 0.004
Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 713 QALNNLGSVYVDCGQLDLAADCYSNALKI--RHTRAHQGLARVHFLKNNKTTAYEEMTKL 770
A NL + Y G+ + A + Y AL++ + +A+ L ++ A E K
Sbjct: 35 DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKA 94
Query: 771 IKKARN 776
++ N
Sbjct: 95 LELDPN 100
|
Length = 100 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 889 | |||
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.97 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.97 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.97 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.97 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.97 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.96 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.96 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.95 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.95 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.94 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.94 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.92 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.92 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.91 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.91 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.9 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.89 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.88 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.88 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 99.87 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.86 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 99.86 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.86 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.86 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.86 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 99.85 | |
| KOG4350 | 620 | consensus Uncharacterized conserved protein, conta | 99.85 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 99.85 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.85 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.84 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.84 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.83 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.82 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.82 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.81 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.81 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.8 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.8 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.8 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.8 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.8 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.78 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.77 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.76 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.75 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.75 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.74 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.74 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.74 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.74 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.73 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.73 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.73 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.73 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.73 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.72 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.72 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.71 | |
| KOG2075 | 521 | consensus Topoisomerase TOP1-interacting protein B | 99.71 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.71 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.71 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.67 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.67 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.67 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.66 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.65 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.65 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.65 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.63 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.63 | |
| KOG4591 | 280 | consensus Uncharacterized conserved protein, conta | 99.63 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.62 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.62 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.62 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.61 | |
| PF00651 | 111 | BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( | 99.61 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.59 | |
| KOG4682 | 488 | consensus Uncharacterized conserved protein, conta | 99.56 | |
| smart00225 | 90 | BTB Broad-Complex, Tramtrack and Bric a brac. Doma | 99.56 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.54 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.48 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.47 | |
| KOG0783 | 1267 | consensus Uncharacterized conserved protein, conta | 99.46 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.46 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.43 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.42 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.41 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.41 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.4 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.4 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.4 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.38 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.36 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.36 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.35 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.35 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.31 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.31 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.3 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.28 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.28 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.25 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.24 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.22 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.18 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.17 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.16 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.16 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.16 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.14 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.14 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.12 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.12 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.1 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.1 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.09 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.07 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.07 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.98 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.97 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.97 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.97 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.93 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.91 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.9 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.88 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.86 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.85 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.85 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.84 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.83 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.83 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.78 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.75 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.73 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.72 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.7 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.65 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.64 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.64 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.64 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.64 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.63 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.62 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.61 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 98.61 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.61 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.6 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.6 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.59 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.59 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.59 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.58 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.56 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.54 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.54 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.53 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.53 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.53 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.53 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.53 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.51 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.51 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.47 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.46 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.45 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.44 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.44 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.43 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 98.37 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.35 | |
| KOG0511 | 516 | consensus Ankyrin repeat protein [General function | 98.35 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.35 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.34 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.34 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.33 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.33 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.32 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.3 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.3 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.26 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 98.25 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.25 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.22 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.21 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.2 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.19 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.19 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.18 | |
| KOG0783 | 1267 | consensus Uncharacterized conserved protein, conta | 98.17 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.15 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.15 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.12 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.12 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.1 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.1 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.08 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.07 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.07 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.04 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.01 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.0 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.99 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 97.97 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 97.94 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.94 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.93 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.91 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.86 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.84 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 97.81 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.79 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.76 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.75 | |
| KOG2716 | 230 | consensus Polymerase delta-interacting protein PDI | 97.74 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.73 | |
| KOG2838 | 401 | consensus Uncharacterized conserved protein, conta | 97.65 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.63 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 97.61 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 97.59 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.56 | |
| KOG3473 | 112 | consensus RNA polymerase II transcription elongati | 97.54 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.53 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 97.52 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.51 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 97.43 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.41 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 97.38 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.36 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 97.35 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 97.34 | |
| PF02214 | 94 | BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi | 97.34 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.33 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 97.32 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.32 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.3 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.3 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 97.24 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.2 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.2 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.19 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.18 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 97.15 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.12 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.08 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.07 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 97.04 | |
| KOG2838 | 401 | consensus Uncharacterized conserved protein, conta | 97.01 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 96.98 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.97 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.94 | |
| KOG1987 | 297 | consensus Speckle-type POZ protein SPOP and relate | 96.93 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 96.93 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.91 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 96.9 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 96.89 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 96.87 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 96.86 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 96.85 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 96.82 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 96.82 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.81 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 96.79 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 96.75 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 96.75 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 96.72 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.71 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 96.68 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.62 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.6 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.51 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.48 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 96.4 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 96.22 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.13 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.11 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 96.05 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 95.96 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.94 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 95.78 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 95.75 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.75 | |
| smart00512 | 104 | Skp1 Found in Skp1 protein family. Family of Skp1 | 95.74 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 95.68 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 95.55 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 95.53 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 95.52 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 95.45 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.35 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 95.32 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 95.3 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 95.26 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 95.26 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 95.24 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 95.22 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 95.08 | |
| PF03931 | 62 | Skp1_POZ: Skp1 family, tetramerisation domain; Int | 94.72 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 94.58 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 94.44 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 94.42 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 94.32 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 94.31 | |
| KOG1665 | 302 | consensus AFH1-interacting protein FIP2, contains | 94.3 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 94.26 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 94.2 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 94.16 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 94.16 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 94.14 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.87 | |
| PF11822 | 317 | DUF3342: Domain of unknown function (DUF3342); Int | 93.86 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 93.84 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.66 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 93.55 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 93.46 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 93.46 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 93.18 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 93.05 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 92.97 | |
| KOG0511 | 516 | consensus Ankyrin repeat protein [General function | 92.91 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 92.79 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 92.77 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 92.76 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.64 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 92.42 | |
| KOG2714 | 465 | consensus SETA binding protein SB1 and related pro | 92.39 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.37 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 92.3 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.25 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 92.16 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 91.85 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 91.78 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 91.34 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 91.27 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.03 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 90.9 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 90.71 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 90.41 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 90.26 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 90.16 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 90.15 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 90.11 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 90.01 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 89.81 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 89.47 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 89.21 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 88.12 | |
| KOG0529 | 421 | consensus Protein geranylgeranyltransferase type I | 88.08 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 88.05 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 87.96 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 87.93 | |
| KOG1724 | 162 | consensus SCF ubiquitin ligase, Skp1 component [Po | 87.77 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 87.17 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 87.17 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 87.14 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 86.99 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 86.96 | |
| KOG3840 | 438 | consensus Uncharaterized conserved protein, contai | 86.84 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 86.32 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 86.3 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 86.01 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 85.97 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 85.44 | |
| KOG2581 | 493 | consensus 26S proteasome regulatory complex, subun | 85.33 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 85.32 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 85.25 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 84.76 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 84.64 | |
| COG5201 | 158 | SKP1 SCF ubiquitin ligase, SKP1 component [Posttra | 84.38 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 84.22 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 84.17 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 83.98 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 83.6 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 83.19 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 82.9 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 82.08 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 82.02 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 80.41 |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-43 Score=374.51 Aligned_cols=446 Identities=17% Similarity=0.140 Sum_probs=385.9
Q ss_pred HhcCCCCCchhHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHcCcch--hHhhHHHHHhhcCCc
Q 002716 354 VAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIY--SIAGLARLGYIKGHK 431 (889)
Q Consensus 354 v~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~~~~al~~~~~~--~~~~la~~~~~~g~~ 431 (889)
...++...+..+-.++++.......+. ....|+.-.++.|+|++|+++-...-..++.. ....+..+++...+.
T Consensus 23 ~~ld~~~~s~~s~~v~qq~~~t~~~~~----~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~ 98 (966)
T KOG4626|consen 23 RKLDQSVSSSGSSSVLQQFNKTHEGSD----DRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRL 98 (966)
T ss_pred HHhccCcccccchHHHHHhccCCccch----hHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccch
Confidence 445555555544455555444333332 24567788889999999999988776554332 223344444444443
Q ss_pred HHH-------HHHHhhhhhccCcchhHHHHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Q 002716 432 LWA-------YEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINR 504 (889)
Q Consensus 432 ~~A-------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~k 504 (889)
+.. +..-....+.+.++|.++.+++.. +.|+..|..+++++|++..+|.++|.++..+|+.+.|.+.|..
T Consensus 99 d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~---~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~ 175 (966)
T KOG4626|consen 99 DKSSAGSLLAIRKNPQGAEAYSNLANILKERGQL---QDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFE 175 (966)
T ss_pred hhhhhhhhhhhhccchHHHHHHHHHHHHHHhchH---HHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHH
Confidence 332 222333445567788999999999 9999999999999999999999999999999999999999999
Q ss_pred HHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhccc
Q 002716 505 ILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSS 583 (889)
Q Consensus 505 al~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~ 583 (889)
+++++| ...+....|.+.-..|...+|...|.++++.+|... .+|..||.+....|+...|+..|
T Consensus 176 alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fA------iawsnLg~~f~~~Gei~~aiq~y-------- 241 (966)
T KOG4626|consen 176 ALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFA------IAWSNLGCVFNAQGEIWLAIQHY-------- 241 (966)
T ss_pred HHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCcee------eeehhcchHHhhcchHHHHHHHH--------
Confidence 999999 778888999999999999999999999999999888 79999999999999999998887
Q ss_pred ccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002716 584 VDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEE 663 (889)
Q Consensus 584 ~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 663 (889)
+++++++|....+|+++|.+|.+.+.++.|+..|.+|+...|+.+.++.++|.+|+.+|..+-|+..|++
T Consensus 242 ----------~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykr 311 (966)
T KOG4626|consen 242 ----------EEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKR 311 (966)
T ss_pred ----------HHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCh-HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCc----hhHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002716 664 SIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLR----KGQALNNLGSVYVDCGQLDLAADCYSNA 738 (889)
Q Consensus 664 al~~~p~~-~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~----~~~~~~~Lg~~y~~~g~~~~A~~~~~~a 738 (889)
+++++|++ +++.++|.++.+.| ...+|..+|.+++. -+++.+|||.+|.++|++++|...|.++
T Consensus 312 al~~~P~F~~Ay~NlanALkd~G-----------~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~a 380 (966)
T KOG4626|consen 312 ALELQPNFPDAYNNLANALKDKG-----------SVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKA 380 (966)
T ss_pred HHhcCCCchHHHhHHHHHHHhcc-----------chHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 99999999 99999999999999 99999999999843 3899999999999999999999999999
Q ss_pred HccCcc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHh-c---CCHHHHHHHHHHHHhcCCCChHHHH
Q 002716 739 LKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSE-Y---CDRELTRADLEMVTQLDPLRVYPYR 812 (889)
Q Consensus 739 l~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~---~~~~~A~~~l~~al~l~p~~~~~~~ 812 (889)
+...|. .++.+||.+|.++|++++|+..|+.++.+.|..+.++.++|. | |+.+.|+.+|.+|++++|..++++.
T Consensus 381 l~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhs 460 (966)
T KOG4626|consen 381 LEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHS 460 (966)
T ss_pred HhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHh
Confidence 999999 899999999999999999999999999999988888888877 3 8888999999999999999999999
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCH
Q 002716 813 YRAAVLMDSHKENEAIAELSRAIAFKADL 841 (889)
Q Consensus 813 ~la~~~~~~g~~~eA~~~l~kal~~~p~~ 841 (889)
+||.+|...|+..+||..|+.++.++||.
T Consensus 461 NLasi~kDsGni~~AI~sY~~aLklkPDf 489 (966)
T KOG4626|consen 461 NLASIYKDSGNIPEAIQSYRTALKLKPDF 489 (966)
T ss_pred hHHHHhhccCCcHHHHHHHHHHHccCCCC
Confidence 99999999999999999999999999985
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=338.95 Aligned_cols=373 Identities=18% Similarity=0.153 Sum_probs=264.7
Q ss_pred HHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHcCc--chhHhhHHHHHhhcCCcHHHHHHHhhhhhccC-------cch
Q 002716 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVT-------PLG 449 (889)
Q Consensus 379 ~~~~~~a~~~lG~~~~~~g~~~eA~~~~~~al~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-------~~g 449 (889)
.++-+.++-++|+++.++|++++|+.+|+.+++..+ ..++.++|.++..+|+...|.+.+...+...+ ..|
T Consensus 112 ~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lg 191 (966)
T KOG4626|consen 112 NPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLG 191 (966)
T ss_pred cchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchh
Confidence 456677899999999999999999999999999764 46788888888888887777766666655443 356
Q ss_pred hHHHHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccH
Q 002716 450 WMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDY 528 (889)
Q Consensus 450 ~~~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~ 528 (889)
.+..+.|.. .+|...|.+|++.+|..+-+|..+|.++..+|+...||..|++++.++| .++++..+|.+|-..+.|
T Consensus 192 nLlka~Grl---~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~ 268 (966)
T KOG4626|consen 192 NLLKAEGRL---EEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIF 268 (966)
T ss_pred HHHHhhccc---chhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcc
Confidence 666666666 7777777777777777777777777777777777777777777777777 677777777777777777
Q ss_pred HHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHH
Q 002716 529 QAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYF 608 (889)
Q Consensus 529 ~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~ 608 (889)
++|+..|.+++.+.|++. .++-++|.+|..+|..+-|+..+ +++++.+|..+.++.
T Consensus 269 d~Avs~Y~rAl~lrpn~A------~a~gNla~iYyeqG~ldlAI~~Y------------------kral~~~P~F~~Ay~ 324 (966)
T KOG4626|consen 269 DRAVSCYLRALNLRPNHA------VAHGNLACIYYEQGLLDLAIDTY------------------KRALELQPNFPDAYN 324 (966)
T ss_pred hHHHHHHHHHHhcCCcch------hhccceEEEEeccccHHHHHHHH------------------HHHHhcCCCchHHHh
Confidence 777777777777777777 55556667777777777775555 777777777777777
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCC
Q 002716 609 RQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQD 687 (889)
Q Consensus 609 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~~~~ 687 (889)
++|.++...|+..+|..+|.+++...|+.+++++++|.++.++|.+++|...|++++...|++ .++.++|.+|.++|
T Consensus 325 NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqg-- 402 (966)
T KOG4626|consen 325 NLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQG-- 402 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcc--
Confidence 777777777777777777777777777777777777777777777777777777777777777 66666666666665
Q ss_pred CCcchhhhhhHHHHhcchhhhCc--h--hHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--hHHHHHHHHHHHcCCHH
Q 002716 688 SSCSSTVVSLLEDALKCPSDRLR--K--GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKT 761 (889)
Q Consensus 688 ~~~~~~~~~~~~~Al~~~~~~~~--~--~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~ 761 (889)
.+++|+.+|+.+++ + ++++.|+|.+|-.+|+.+.|+++|.+|+.++|. +++.+||.+|...|+.
T Consensus 403 ---------nl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni- 472 (966)
T KOG4626|consen 403 ---------NLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNI- 472 (966)
T ss_pred ---------cHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCc-
Confidence 55556555555522 2 555566666666666666666666666666655 5555566665555555
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 002716 762 TAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLM 819 (889)
Q Consensus 762 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~ 819 (889)
.+|+..|+.+++++|+.+.++-+++.++.
T Consensus 473 -----------------------------~~AI~sY~~aLklkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 473 -----------------------------PEAIQSYRTALKLKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred -----------------------------HHHHHHHHHHHccCCCCchhhhHHHHHHH
Confidence 66666666667777777777777766554
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=361.56 Aligned_cols=480 Identities=15% Similarity=0.103 Sum_probs=384.0
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHcCc--chhHhhHHHHHhhcCCcHHHHHHHhh
Q 002716 363 DKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNS 440 (889)
Q Consensus 363 ~~~v~~l~~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~~~~al~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~ 440 (889)
+.+...++++++..++. ..++..+|.++...|++++|++.|++++...+ ......++..+...|+.+.|.+.+..
T Consensus 380 ~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 456 (899)
T TIGR02917 380 EKAAEYLAKATELDPEN---AAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKK 456 (899)
T ss_pred HHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHH
Confidence 44455555555544332 23455666666666666666666666665432 22334455566666666666666665
Q ss_pred hhhccCc-------chhHHHHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CH
Q 002716 441 VISSVTP-------LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-AL 512 (889)
Q Consensus 441 ~~~~~~~-------~g~~~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~ 512 (889)
++...+. .|.++...+.+ ++|+..|+++++.+|++..+++.+|.++...|++++|+..+++++...| +.
T Consensus 457 ~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 533 (899)
T TIGR02917 457 LEKKQPDNASLHNLLGAIYLGKGDL---AKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNL 533 (899)
T ss_pred HHHhCCCCcHHHHHHHHHHHhCCCH---HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcH
Confidence 5544332 34445555555 6677777777777777777777777777777777777777777776666 66
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHH
Q 002716 513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 592 (889)
Q Consensus 513 ~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~ 592 (889)
.++..++.++...|++++|+..+++++..+|.+. ..+..++.++...|++++|...+
T Consensus 534 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~----------------- 590 (899)
T TIGR02917 534 RAILALAGLYLRTGNEEEAVAWLEKAAELNPQEI------EPALALAQYYLGKGQLKKALAIL----------------- 590 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch------hHHHHHHHHHHHCCCHHHHHHHH-----------------
Confidence 6666667777677777777777777777666666 55666667777777777775555
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-
Q 002716 593 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF- 671 (889)
Q Consensus 593 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~- 671 (889)
+++++..|.++..+..+|.++...|++++|+..|+++++..|.++.++..+|.++...|++++|+..|+++++.+|++
T Consensus 591 -~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 669 (899)
T TIGR02917 591 -NEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNT 669 (899)
T ss_pred -HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Confidence 888999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhh----CchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc-hH
Q 002716 672 EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR----LRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-RA 746 (889)
Q Consensus 672 ~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~----~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~-~a 746 (889)
.++..++.++...| .+++|...+... +.....+..+|.++...|++++|+..|++++...|+ ..
T Consensus 670 ~~~~~l~~~~~~~~-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 738 (899)
T TIGR02917 670 EAQIGLAQLLLAAK-----------RTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQN 738 (899)
T ss_pred HHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchH
Confidence 99999999999998 888888888776 233778899999999999999999999999999988 78
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCC
Q 002716 747 HQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEY----CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSH 822 (889)
Q Consensus 747 ~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g 822 (889)
+..++.++...|++++|...++++++..|++..++..++.. |+.++|+..|+++++..|+++.++..+|.++...|
T Consensus 739 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 818 (899)
T TIGR02917 739 AIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELK 818 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 88999999999999999999999999999999888887773 89999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHhh
Q 002716 823 KENEAIAELSRAIAFKADL-HLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRV 884 (889)
Q Consensus 823 ~~~eA~~~l~kal~~~p~~-~~l~l~a~~~~~~g~~~~A~~~~~~al~l~P~~~~~l~l~~~~ 884 (889)
+ .+|+..+++++...|++ ..+..++.++...|++++|++.|+++++.+|.++++...+..+
T Consensus 819 ~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 880 (899)
T TIGR02917 819 D-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALA 880 (899)
T ss_pred c-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Confidence 9 88999999999999986 4555888889999999999999999999999999988766654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=358.67 Aligned_cols=478 Identities=18% Similarity=0.184 Sum_probs=322.3
Q ss_pred CCchhHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHcCcc--hhHhhHHHHHhhcCCcHHHHHH
Q 002716 360 PRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI--YSIAGLARLGYIKGHKLWAYEK 437 (889)
Q Consensus 360 ~~~~~~v~~l~~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~~~~al~~~~~--~~~~~la~~~~~~g~~~~A~~~ 437 (889)
...+.++..++++++..++.+ .+++.+|.+++..|+|++|+..|+++++.++. .....+++++...|+++.|+..
T Consensus 36 ~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~a~~~ 112 (899)
T TIGR02917 36 NKYKAAIIQLKNALQKDPNDA---EARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDE 112 (899)
T ss_pred CChHhHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHCCCHHHHHHh
Confidence 345677888888888777754 48899999999999999999999999987543 3466789999999999999988
Q ss_pred Hhhhhhc--------cCcchhHHHHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCC
Q 002716 438 LNSVISS--------VTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFK 509 (889)
Q Consensus 438 ~~~~~~~--------~~~~g~~~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~ 509 (889)
+...... +...|..+...+.+ ++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++..+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 189 (899)
T TIGR02917 113 LPGKTLLDDEGAAELLALRGLAYLGLGQL---ELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTAD 189 (899)
T ss_pred hcccccCCchhhHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 8765421 22367778888888 999999999999999999999999999999999999999999999999
Q ss_pred C-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccc
Q 002716 510 L-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG 588 (889)
Q Consensus 510 p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~ 588 (889)
| +..++..+|.++...|++++|+..|++++..+|++. .++..++.++...|++++|...+
T Consensus 190 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~------~~~~~~~~~~~~~g~~~~A~~~~------------- 250 (899)
T TIGR02917 190 PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNP------AVLLALATILIEAGEFEEAEKHA------------- 250 (899)
T ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHcCCHHHHHHHH-------------
Confidence 9 889999999999999999999999999999999998 78888999999999999997777
Q ss_pred hHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 002716 589 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (889)
Q Consensus 589 sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 668 (889)
.++++..|.++..++..|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..++++++..
T Consensus 251 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 325 (899)
T TIGR02917 251 -----DALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA 325 (899)
T ss_pred -----HHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCh-HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhC----chhHHHHHHHHHHHHcCChHHHHHHHHHHHccCc
Q 002716 669 RSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRL----RKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH 743 (889)
Q Consensus 669 p~~-~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~----~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p 743 (889)
|++ .++..++.++...| .+++|+..+.... .....+..+|.++...|++++|..+|+++++..|
T Consensus 326 p~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 394 (899)
T TIGR02917 326 PNSHQARRLLASIQLRLG-----------RVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP 394 (899)
T ss_pred CCChHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 554 44444555555544 4444444443331 1133444455555555555555555555554444
Q ss_pred c--hHHHHHHHHHHHcCCHHHHHHHHHHH----------------------------------HHHhccCHHHHHHHHhc
Q 002716 744 T--RAHQGLARVHFLKNNKTTAYEEMTKL----------------------------------IKKARNNASAYEKRSEY 787 (889)
Q Consensus 744 ~--~a~~~La~~~~~~g~~~~A~~~~~~a----------------------------------l~~~~~~~~~~~~~~~~ 787 (889)
+ .++..+|.++...|++++|+..++++ +...|+++..+..++..
T Consensus 395 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 474 (899)
T TIGR02917 395 ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAI 474 (899)
T ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 4 44444444455555555555544444 44444444444443331
Q ss_pred ----CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHH
Q 002716 788 ----CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL-HLLHLRAAFHEHTGDVLGALR 862 (889)
Q Consensus 788 ----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~-~~l~l~a~~~~~~g~~~~A~~ 862 (889)
|++++|...|+++++.+|.+..++..+|.++...|++++|+..+++++...|+. ..+..++.++...|++++|+.
T Consensus 475 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 554 (899)
T TIGR02917 475 YLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVA 554 (899)
T ss_pred HHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 555556666666665555555555556666666666666666666655555553 333344555555566666666
Q ss_pred HHHHHHccCCCCHHHH
Q 002716 863 DCRAALSVDPNDQEML 878 (889)
Q Consensus 863 ~~~~al~l~P~~~~~l 878 (889)
.++++++.+|.+....
T Consensus 555 ~~~~~~~~~~~~~~~~ 570 (899)
T TIGR02917 555 WLEKAAELNPQEIEPA 570 (899)
T ss_pred HHHHHHHhCccchhHH
Confidence 6666666555555443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-33 Score=349.31 Aligned_cols=474 Identities=16% Similarity=0.041 Sum_probs=358.1
Q ss_pred chhHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHcCcchh------------------HhhHHH
Q 002716 362 SDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYS------------------IAGLAR 423 (889)
Q Consensus 362 ~~~~v~~l~~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~~~~al~~~~~~~------------------~~~la~ 423 (889)
.+.+...|++++...+++++ ++..++.+++..|++++|.+.++++++..+... ...+|+
T Consensus 44 ~d~a~~~l~kl~~~~p~~p~---~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ 120 (1157)
T PRK11447 44 EDLVRQSLYRLELIDPNNPD---VIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQAR 120 (1157)
T ss_pred hHHHHHHHHHHHccCCCCHH---HHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHH
Confidence 35667889999999888754 677889999999999999999999988654321 244577
Q ss_pred HHhhcCCcHHHHHHHhhhhhccCcchh---HHHHH-h-hcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHH
Q 002716 424 LGYIKGHKLWAYEKLNSVISSVTPLGW---MYQER-S-LYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAA 498 (889)
Q Consensus 424 ~~~~~g~~~~A~~~~~~~~~~~~~~g~---~~~~~-~-~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~A 498 (889)
++...|++++|.+.+..++...++... .|... . .-+..++|+..|+++++.+|+++.++..+|.++...|++++|
T Consensus 121 ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eA 200 (1157)
T PRK11447 121 LLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEG 200 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHH
Confidence 888999999999999999987665432 22221 0 112338999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCC-C----------------------------------HH--------------------HHHHHHHHHH
Q 002716 499 LAEINRILGFKL-A----------------------------------LE--------------------CLELRFCFFL 523 (889)
Q Consensus 499 l~~l~kal~~~p-~----------------------------------~~--------------------~l~~~a~~~~ 523 (889)
++.+++++...+ . .. ....+|..+.
T Consensus 201 l~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~ 280 (1157)
T PRK11447 201 FAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAV 280 (1157)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 999998865332 0 00 0013377888
Q ss_pred hcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCC
Q 002716 524 ALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK 603 (889)
Q Consensus 524 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~ 603 (889)
..|++++|+..|+++++.+|++. .++..+|.++...|++++|+..+ +++++.+|++
T Consensus 281 ~~g~~~~A~~~l~~aL~~~P~~~------~a~~~Lg~~~~~~g~~~eA~~~l------------------~~Al~~~p~~ 336 (1157)
T PRK11447 281 DSGQGGKAIPELQQAVRANPKDS------EALGALGQAYSQQGDRARAVAQF------------------EKALALDPHS 336 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHH------------------HHHHHhCCCc
Confidence 89999999999999999999998 89999999999999999998777 9999999876
Q ss_pred hH--------------HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 002716 604 GV--------------LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 669 (889)
Q Consensus 604 ~~--------------~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p 669 (889)
.. ....+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|++.|+++++++|
T Consensus 337 ~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p 416 (1157)
T PRK11447 337 SNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP 416 (1157)
T ss_pred cchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 53 2235688899999999999999999999999999999999999999999999999999999999
Q ss_pred Ch-HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCc-------------hhHHHHHHHHHHHHcCChHHHHHHH
Q 002716 670 SF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLR-------------KGQALNNLGSVYVDCGQLDLAADCY 735 (889)
Q Consensus 670 ~~-~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~-------------~~~~~~~Lg~~y~~~g~~~~A~~~~ 735 (889)
++ .++..++.++... ..++|+..+..... ....+..+|.++...|++++|+..|
T Consensus 417 ~~~~a~~~L~~l~~~~------------~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~ 484 (1157)
T PRK11447 417 GNTNAVRGLANLYRQQ------------SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQ 484 (1157)
T ss_pred CCHHHHHHHHHHHHhc------------CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 99 8888888887543 23444433332210 0234556777777777788888888
Q ss_pred HHHHccCcc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhc--------------------------
Q 002716 736 SNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEY-------------------------- 787 (889)
Q Consensus 736 ~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-------------------------- 787 (889)
+++++.+|+ .+++.+|.+|...|++++|+..++++++..|.++..+...+.+
T Consensus 485 ~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~ 564 (1157)
T PRK11447 485 RQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNI 564 (1157)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhH
Confidence 877777777 6667777777777777777777777777777555433322211
Q ss_pred ----------------------------------------------------CCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 002716 788 ----------------------------------------------------CDRELTRADLEMVTQLDPLRVYPYRYRA 815 (889)
Q Consensus 788 ----------------------------------------------------~~~~~A~~~l~~al~l~p~~~~~~~~la 815 (889)
|++++|+..|+++++.+|+++.++..+|
T Consensus 565 ~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la 644 (1157)
T PRK11447 565 QELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLI 644 (1157)
T ss_pred HHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 5666666666666666666666666666
Q ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 002716 816 AVLMDSHKENEAIAELSRAIAFKADLH-LLHLRAAFHEHTGDVLGALRDCRAALSVDPND 874 (889)
Q Consensus 816 ~~~~~~g~~~eA~~~l~kal~~~p~~~-~l~l~a~~~~~~g~~~~A~~~~~~al~l~P~~ 874 (889)
.++...|++++|++.++++++..|+.. ....++.++..+|++++|++.|++++...|++
T Consensus 645 ~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 704 (1157)
T PRK11447 645 EVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQ 704 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccC
Confidence 666666666666666666666666542 22345556666666666666666666665544
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=337.69 Aligned_cols=473 Identities=15% Similarity=0.025 Sum_probs=379.3
Q ss_pred CCchhHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHcCcchhHhhHHHHH--hhcCC-------
Q 002716 360 PRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLG--YIKGH------- 430 (889)
Q Consensus 360 ~~~~~~v~~l~~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~~~~al~~~~~~~~~~la~~~--~~~g~------- 430 (889)
...+.++..++++++..|++. .++..+|.+++..|++++|+..|++++............... ...+.
T Consensus 161 g~~~~A~~~L~~ll~~~P~~~---~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~ 237 (1157)
T PRK11447 161 AQRPEAINQLQRLNADYPGNT---GLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAA 237 (1157)
T ss_pred ccHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHH
Confidence 345678888999888877754 467899999999999999999999987643211110000000 00011
Q ss_pred -------------cHHHHHHHhhhhhcc-------CcchhHHHHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHH
Q 002716 431 -------------KLWAYEKLNSVISSV-------TPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLM 490 (889)
Q Consensus 431 -------------~~~A~~~~~~~~~~~-------~~~g~~~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~ 490 (889)
...|...+....... ...|..+...+.+ ++|+..|+++++.+|+++.++..+|.++.
T Consensus 238 l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~---~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~ 314 (1157)
T PRK11447 238 LQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQG---GKAIPELQQAVRANPKDSEALGALGQAYS 314 (1157)
T ss_pred HHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 112222222211110 1236667777777 99999999999999999999999999999
Q ss_pred hccCHHHHHHHHHHHHcCCC-CHH--------------HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHH
Q 002716 491 TKQNVEAALAEINRILGFKL-ALE--------------CLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAAS 555 (889)
Q Consensus 491 ~~g~~~~Al~~l~kal~~~p-~~~--------------~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~ 555 (889)
..|++++|+..|+++++.+| +.. ....+|.++...|++++|+..|++++..+|++. .++
T Consensus 315 ~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~------~a~ 388 (1157)
T PRK11447 315 QQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDS------YAV 388 (1157)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH------HHH
Confidence 99999999999999999988 321 123457788899999999999999999999998 788
Q ss_pred HHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHH--------------------------
Q 002716 556 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFR-------------------------- 609 (889)
Q Consensus 556 ~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~-------------------------- 609 (889)
..+|.++...|++++|+.++ +++++.+|.+..++..
T Consensus 389 ~~Lg~~~~~~g~~~eA~~~y------------------~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~ 450 (1157)
T PRK11447 389 LGLGDVAMARKDYAAAERYY------------------QQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRR 450 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHH------------------HHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHH
Confidence 89999999999999998888 6666666666555443
Q ss_pred ----------------HHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-H
Q 002716 610 ----------------QSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-E 672 (889)
Q Consensus 610 ----------------la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~ 672 (889)
+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++.+|++ .
T Consensus 451 ~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~ 530 (1157)
T PRK11447 451 SIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPE 530 (1157)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence 44556678999999999999999999999999999999999999999999999999999999 8
Q ss_pred HHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCch--------------hHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002716 673 AFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK--------------GQALNNLGSVYVDCGQLDLAADCYSNA 738 (889)
Q Consensus 673 a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~--------------~~~~~~Lg~~y~~~g~~~~A~~~~~~a 738 (889)
+++.++..+...+ ..++|+..+...... ......++..+...|++++|+..++
T Consensus 531 ~~~a~al~l~~~~-----------~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~-- 597 (1157)
T PRK11447 531 QVYAYGLYLSGSD-----------RDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR-- 597 (1157)
T ss_pred HHHHHHHHHHhCC-----------CHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH--
Confidence 8888888887777 777777776654211 1234567889999999999999887
Q ss_pred HccCcc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCChHHHH
Q 002716 739 LKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEY----CDRELTRADLEMVTQLDPLRVYPYR 812 (889)
Q Consensus 739 l~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~ 812 (889)
..|. ..+..+|.++...|++++|+..|+++++..|++..++..++.. |++++|+..++++++..|+++.++.
T Consensus 598 --~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~ 675 (1157)
T PRK11447 598 --QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQR 675 (1157)
T ss_pred --hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHH
Confidence 3555 7888999999999999999999999999999999988888773 9999999999999999999999999
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHc---cCCCCHHH
Q 002716 813 YRAAVLMDSHKENEAIAELSRAIAFKADL-------HLLHLRAAFHEHTGDVLGALRDCRAALS---VDPNDQEM 877 (889)
Q Consensus 813 ~la~~~~~~g~~~eA~~~l~kal~~~p~~-------~~l~l~a~~~~~~g~~~~A~~~~~~al~---l~P~~~~~ 877 (889)
.+|.++...|++++|+..|++++...|+. ..+...+.++...|++++|+..|++|+. +.|..+..
T Consensus 676 ~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~~p~~ 750 (1157)
T PRK11447 676 RVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPTRPQD 750 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCCCCC
Confidence 99999999999999999999999876542 1333568889999999999999999995 43444443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-30 Score=305.05 Aligned_cols=426 Identities=14% Similarity=0.072 Sum_probs=252.7
Q ss_pred HHHHHHHhhhHHHhcccHHHHHHHHHHHHHcCcchhHhhHHHHHhhcCCcHHHHHHHhhhhhccCcchhHHHHHhhcCCh
Q 002716 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEG 461 (889)
Q Consensus 382 ~~~a~~~lG~~~~~~g~~~eA~~~~~~al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~~~~ 461 (889)
.+..+..+|..++..|+|++|+..|++++...+... .+.++|.+|...+.+
T Consensus 126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~--------------------------~~~n~a~~~~~l~~~--- 176 (615)
T TIGR00990 126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPV--------------------------YYSNRAACHNALGDW--- 176 (615)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchH--------------------------HHHHHHHHHHHhCCH---
Confidence 355688999999999999999999999998754211 012345667777777
Q ss_pred hHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 002716 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILT 540 (889)
Q Consensus 462 ~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~ 540 (889)
++|+.+++++++++|++..+|+.+|.+|...|++++|+..|.++...++ +.........-.. ...+...+..++.
T Consensus 177 ~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~a~~~~~~~l~ 252 (615)
T TIGR00990 177 EKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLL----KKFAESKAKEILE 252 (615)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH----HHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999988877766 3222111111111 1345555666677
Q ss_pred hCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHH---h
Q 002716 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR---L 617 (889)
Q Consensus 541 ~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~---~ 617 (889)
..|.+. ..+..++..+... ....+ ...+....+.+|.....+..++..+.. .
T Consensus 253 ~~~~~~------~~~~~~~~~~~~~-~~~~~------------------~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~ 307 (615)
T TIGR00990 253 TKPENL------PSVTFVGNYLQSF-RPKPR------------------PAGLEDSNELDEETGNGQLQLGLKSPESKAD 307 (615)
T ss_pred cCCCCC------CCHHHHHHHHHHc-cCCcc------------------hhhhhcccccccccccchHHHHHHHHHhhhh
Confidence 777665 2333333322111 11111 001122233333333333333333222 2
Q ss_pred CCHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCCCCcchh
Q 002716 618 NCPEAAMRSLQLARQH---AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSST 693 (889)
Q Consensus 618 g~~~~A~~~l~~al~~---~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~~~~~~~~~~ 693 (889)
+++++|+..|+++++. .|....++..+|.++...|++++|+..|++++.++|++ .++..+|.++...|
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g-------- 379 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELG-------- 379 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC--------
Confidence 4455555555555543 24444455555555555555555555555555555555 45555555555555
Q ss_pred hhhhHHHHhcchhhh----CchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--hHHHHHHHHHHHcCCHHHHHHHH
Q 002716 694 VVSLLEDALKCPSDR----LRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEM 767 (889)
Q Consensus 694 ~~~~~~~Al~~~~~~----~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~ 767 (889)
.+++|+..+.+. +....+++.+|.++...|++++|+.+|+++++++|+ .++..+|.++..+|++++|+..+
T Consensus 380 ---~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~ 456 (615)
T TIGR00990 380 ---DPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATF 456 (615)
T ss_pred ---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 444444444443 112456666666666666666666666666666665 55566666666666666666666
Q ss_pred HHHHHHhccCHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCChHH------HHHHHH-HHHhCCCHHHHHHHHHHHHh
Q 002716 768 TKLIKKARNNASAYEKRSEY----CDRELTRADLEMVTQLDPLRVYP------YRYRAA-VLMDSHKENEAIAELSRAIA 836 (889)
Q Consensus 768 ~~al~~~~~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~------~~~la~-~~~~~g~~~eA~~~l~kal~ 836 (889)
++++...|+++.++..++.. |++++|+..|+++++++|..... +...+. .+...|++++|+..+++++.
T Consensus 457 ~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~ 536 (615)
T TIGR00990 457 RRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI 536 (615)
T ss_pred HHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 66666666666555555542 56666666666666666643222 112222 22334666666666666666
Q ss_pred cCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH
Q 002716 837 FKADLHL-LHLRAAFHEHTGDVLGALRDCRAALSVDPNDQE 876 (889)
Q Consensus 837 ~~p~~~~-l~l~a~~~~~~g~~~~A~~~~~~al~l~P~~~~ 876 (889)
.+|+... +..++.++.++|++++|++.|++++++.+...+
T Consensus 537 l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 537 IDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 6666533 335566666666666666666666666665444
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-27 Score=286.78 Aligned_cols=497 Identities=12% Similarity=-0.014 Sum_probs=366.7
Q ss_pred CCCchhHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHcCcchhHhh--HHHHHhhcCCcHHHHH
Q 002716 359 DPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAG--LARLGYIKGHKLWAYE 436 (889)
Q Consensus 359 ~~~~~~~v~~l~~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~~~~al~~~~~~~~~~--la~~~~~~g~~~~A~~ 436 (889)
.+....++..++++++..|++ ..+++.|+.+|+..|++++|+.+++++++.++...... ++.+ ++++.|.+
T Consensus 57 ~Gd~~~A~~~l~~Al~~dP~n---~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i----~~~~kA~~ 129 (987)
T PRK09782 57 NNDEATAIREFEYIHQQVPDN---IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI----PVEVKSVT 129 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh----ccChhHHH
Confidence 345567788888888888887 34668888889999999999999999988766443332 3333 77888888
Q ss_pred HHhhhhhccCcchhHHHHHhh---------cCChhHHHHHHH-HhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHH
Q 002716 437 KLNSVISSVTPLGWMYQERSL---------YCEGDKRWEDLD-KATALDPTLSYPYMYRASSLMTKQNVEAALAEINRIL 506 (889)
Q Consensus 437 ~~~~~~~~~~~~g~~~~~~~~---------~~~~~~A~~~~~-~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal 506 (889)
.+++++...+..-.++..... |...++|...++ +.+..+|......+.++.+|..+|+|++|+..+.+.+
T Consensus 130 ~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~ 209 (987)
T PRK09782 130 TVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEAR 209 (987)
T ss_pred HHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 888888877754443322221 222244444444 2233333344456666888888888888888888888
Q ss_pred cCCC-CHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhh----
Q 002716 507 GFKL-ALECLELRFCFFLA-LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDR---- 580 (889)
Q Consensus 507 ~~~p-~~~~l~~~a~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~---- 580 (889)
+..| +...+..++.+|.. +++ ++|+..++..++ +++ .+...++..+...|+.++|..+++.+..
T Consensus 210 k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk---~d~------~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~ 279 (987)
T PRK09782 210 QQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIF---TDP------QSRITYATALAYRGEKARLQHYLIENKPLFTT 279 (987)
T ss_pred hcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcc---cCH------HHHHHHHHHHHHCCCHHHHHHHHHhCcccccC
Confidence 8888 77777777777777 466 777777554333 334 5666777888888888888776642111
Q ss_pred -------------cccc------------------------------------------cc------------------c
Q 002716 581 -------------WSSV------------------------------------------DD------------------I 587 (889)
Q Consensus 581 -------------~~~~------------------------------------------dd------------------~ 587 (889)
.+.. +. .
T Consensus 280 ~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 359 (987)
T PRK09782 280 DAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKA 359 (987)
T ss_pred CCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchh
Confidence 0000 00 0
Q ss_pred chHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH-----------------------------------
Q 002716 588 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ----------------------------------- 632 (889)
Q Consensus 588 ~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~----------------------------------- 632 (889)
.+...+....+..|.+.......+......|+.++|.+.|+++..
T Consensus 360 ~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~ 439 (987)
T PRK09782 360 EALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILS 439 (987)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhc
Confidence 012222333333466666666666666666766666666554433
Q ss_pred ------------------------------cCCC--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 002716 633 ------------------------------HAAS--DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYA 680 (889)
Q Consensus 633 ------------------------------~~p~--~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~ 680 (889)
..|. ++.+++.+|.++.. |+.++|+..+.+++...|+......++.+
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~a 518 (987)
T PRK09782 440 KPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQ 518 (987)
T ss_pred cccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 2344 66777888888876 78888888888888888877556666777
Q ss_pred HHHcCCCCCcchhhhhhHHHHhcchhhhCc---hhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--hHHHHHHHHHH
Q 002716 681 LADSSQDSSCSSTVVSLLEDALKCPSDRLR---KGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHF 755 (889)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~---~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~ 755 (889)
+...| ++++|+..+++... ....+..+|.++...|++++|+.+|+++++..|. ..+..++....
T Consensus 519 l~~~G-----------r~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~ 587 (987)
T PRK09782 519 AYQVE-----------DYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRY 587 (987)
T ss_pred HHHCC-----------CHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 77777 88889888887632 2456788999999999999999999999999887 44555666666
Q ss_pred HcCCHHHHHHHHHHHHHHhccCHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHH
Q 002716 756 LKNNKTTAYEEMTKLIKKARNNASAYEKRSEY----CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAEL 831 (889)
Q Consensus 756 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l 831 (889)
..|++++|+..++++++..|+ +.++..++.. |+.++|+..|++++.++|+++.++.++|.++...|++++|+..|
T Consensus 588 ~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l 666 (987)
T PRK09782 588 IPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREML 666 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 779999999999999999996 7788777763 89999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHhhh
Q 002716 832 SRAIAFKADL-HLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVY 885 (889)
Q Consensus 832 ~kal~~~p~~-~~l~l~a~~~~~~g~~~~A~~~~~~al~l~P~~~~~l~l~~~~~ 885 (889)
+++++..|++ ..+..++.++..+|++++|+..|+++++++|++..+...+..+.
T Consensus 667 ~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~ 721 (987)
T PRK09782 667 ERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQN 721 (987)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHH
Confidence 9999999987 55558999999999999999999999999999988887766543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-28 Score=288.10 Aligned_cols=410 Identities=13% Similarity=0.027 Sum_probs=323.0
Q ss_pred CCchhHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHcCcc--hhHhhHHHHHhhcCCcHHHHHH
Q 002716 360 PRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI--YSIAGLARLGYIKGHKLWAYEK 437 (889)
Q Consensus 360 ~~~~~~v~~l~~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~~~~al~~~~~--~~~~~la~~~~~~g~~~~A~~~ 437 (889)
...+.++..++++++..+++ ..+.++|.+|+..|+|++|++.+++|++.++. .++..+|.++...|+++.|+..
T Consensus 141 ~~~~~Ai~~y~~al~~~p~~----~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~ 216 (615)
T TIGR00990 141 KDFNKAIKLYSKAIECKPDP----VYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLD 216 (615)
T ss_pred CCHHHHHHHHHHHHhcCCch----HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34567888888888877753 36889999999999999999999999997654 4677899999999999999988
Q ss_pred HhhhhhccCcch---hHHHHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHH
Q 002716 438 LNSVISSVTPLG---WMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALE 513 (889)
Q Consensus 438 ~~~~~~~~~~~g---~~~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~ 513 (889)
+..+........ .....+... ..+......+++.+|.+...+..++..+. ......+...+......++ ...
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~l~---~~a~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 292 (615)
T TIGR00990 217 LTASCIIDGFRNEQSAQAVERLLK---KFAESKAKEILETKPENLPSVTFVGNYLQ-SFRPKPRPAGLEDSNELDEETGN 292 (615)
T ss_pred HHHHHHhCCCccHHHHHHHHHHHH---HHHHHHHHHHHhcCCCCCCCHHHHHHHHH-HccCCcchhhhhccccccccccc
Confidence 765543322111 111122222 45666777888889988888887777553 2233334444555555555 333
Q ss_pred HHHHHHHHH---HhcccHHHHHHHHHHHHHhC---CCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhccccccc
Q 002716 514 CLELRFCFF---LALEDYQAALCDVQAILTLS---PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 587 (889)
Q Consensus 514 ~l~~~a~~~---~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~ 587 (889)
.+..+|..+ ...++|++|+..|++++..+ |+.. .++..+|.++...|++++|+..+
T Consensus 293 ~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a------~a~~~lg~~~~~~g~~~eA~~~~------------ 354 (615)
T TIGR00990 293 GQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEA------IALNLRGTFKCLKGKHLEALADL------------ 354 (615)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhH------HHHHHHHHHHHHcCCHHHHHHHH------------
Confidence 334444333 34578999999999999875 4444 68889999999999999997777
Q ss_pred chHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002716 588 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (889)
Q Consensus 588 ~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 667 (889)
+++++.+|.....+..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++.+
T Consensus 355 ------~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l 428 (615)
T TIGR00990 355 ------SKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL 428 (615)
T ss_pred ------HHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--h
Q 002716 668 KRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--R 745 (889)
Q Consensus 668 ~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~ 745 (889)
+|++. .++.++|.++...|++++|+..|+++++..|. .
T Consensus 429 ~P~~~----------------------------------------~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~ 468 (615)
T TIGR00990 429 DPDFI----------------------------------------FSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPD 468 (615)
T ss_pred CccCH----------------------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH
Confidence 88862 24566777777788888888888888888877 7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHH------H--HHh---cCCHHHHHHHHHHHHhcCCCChHHHHHH
Q 002716 746 AHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYE------K--RSE---YCDRELTRADLEMVTQLDPLRVYPYRYR 814 (889)
Q Consensus 746 a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------~--~~~---~~~~~~A~~~l~~al~l~p~~~~~~~~l 814 (889)
++..+|.++...|++++|++.|+++++..|.....+. . ... .+++++|...++++++++|++..++..+
T Consensus 469 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~l 548 (615)
T TIGR00990 469 VYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATM 548 (615)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 7778888888888888888888888888775322111 1 111 2788999999999999999999999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCH
Q 002716 815 AAVLMDSHKENEAIAELSRAIAFKADL 841 (889)
Q Consensus 815 a~~~~~~g~~~eA~~~l~kal~~~p~~ 841 (889)
|.++.+.|++++|+..|++++++.+..
T Consensus 549 a~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 549 AQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 999999999999999999999998875
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-27 Score=262.93 Aligned_cols=374 Identities=14% Similarity=0.006 Sum_probs=283.7
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHcCc---chhHhhHHHHHhhcCCcHHHHHHHhh
Q 002716 364 KTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH---IYSIAGLARLGYIKGHKLWAYEKLNS 440 (889)
Q Consensus 364 ~~v~~l~~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~~~~al~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~ 440 (889)
.+...+..+++.++++ ..++..-+++.+.+|+|..|+.+|++++...+ .....|++.+.++.|....|...+..
T Consensus 148 ~A~a~F~~Vl~~sp~N---il~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~r 224 (1018)
T KOG2002|consen 148 DADAQFHFVLKQSPDN---ILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFER 224 (1018)
T ss_pred HHHHHHHHHHhhCCcc---hHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHH
Confidence 4445556666666655 45667777888899999999999999988653 34467788889999999999999998
Q ss_pred hhhccCcchhHHHHHhhc-------CChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC---
Q 002716 441 VISSVTPLGWMYQERSLY-------CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL--- 510 (889)
Q Consensus 441 ~~~~~~~~g~~~~~~~~~-------~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p--- 510 (889)
++...+....++...+.+ ...+.++..+.++-+.+|.+|.+...++..++..|+|..+......++....
T Consensus 225 alqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~ 304 (1018)
T KOG2002|consen 225 ALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKS 304 (1018)
T ss_pred HHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhH
Confidence 888777544443333322 1127788999999999999999999999999999999999999999887663
Q ss_pred -CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccch
Q 002716 511 -ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 589 (889)
Q Consensus 511 -~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~s 589 (889)
..+.++.+|..|..+|+|++|..+|.++++.+|++. +-.++.+|.+|...|+++.|...|
T Consensus 305 ~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~-----~l~~~GlgQm~i~~~dle~s~~~f-------------- 365 (1018)
T KOG2002|consen 305 IKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNF-----VLPLVGLGQMYIKRGDLEESKFCF-------------- 365 (1018)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCc-----cccccchhHHHHHhchHHHHHHHH--------------
Confidence 567789999999999999999999999999999982 157788999999999999998888
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhC----CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002716 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLN----CPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI 665 (889)
Q Consensus 590 l~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al 665 (889)
++.++..|++......+|.+|...+ ..+.|..++.++++..|.+.++|..+|.++... +.-.++..|.+|+
T Consensus 366 ----Ekv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~-d~~~sL~~~~~A~ 440 (1018)
T KOG2002|consen 366 ----EKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT-DPWASLDAYGNAL 440 (1018)
T ss_pred ----HHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc-ChHHHHHHHHHHH
Confidence 8888899999999999998888875 567888888889888899999999998888754 4444588888887
Q ss_pred hc-----CC-ChHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCch--------------hHHHHHHHHHHHHc
Q 002716 666 QM-----KR-SFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK--------------GQALNNLGSVYVDC 725 (889)
Q Consensus 666 ~~-----~p-~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~--------------~~~~~~Lg~~y~~~ 725 (889)
.+ .+ ..+...++|..+...| .++.|...+..+... ...-+|++.++...
T Consensus 441 d~L~~~~~~ip~E~LNNvaslhf~~g-----------~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l 509 (1018)
T KOG2002|consen 441 DILESKGKQIPPEVLNNVASLHFRLG-----------NIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEEL 509 (1018)
T ss_pred HHHHHcCCCCCHHHHHhHHHHHHHhc-----------ChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhh
Confidence 43 11 1167777888877777 444444444443111 12466777777777
Q ss_pred CChHHHHHHHHHHHccCcc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Q 002716 726 GQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKAR 775 (889)
Q Consensus 726 g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~ 775 (889)
++++.|.+.|...++..|. .++..+|......++..+|...+..++..+.
T Consensus 510 ~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~ 561 (1018)
T KOG2002|consen 510 HDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS 561 (1018)
T ss_pred hhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc
Confidence 7777777777777777766 5555565544555555555555555555444
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-27 Score=263.51 Aligned_cols=474 Identities=16% Similarity=0.119 Sum_probs=392.1
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHhcc---cHHHHHHHHHHHHHcC--cchhHhhHHHHHhhcCCcHHHHHH
Q 002716 363 DKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRK---EYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEK 437 (889)
Q Consensus 363 ~~~v~~l~~~~~~~~~~~~~~~a~~~lG~~~~~~g---~~~eA~~~~~~al~~~--~~~~~~~la~~~~~~g~~~~A~~~ 437 (889)
..+....+++++..|.. +.++..||.+-+... .|..|...+.+|...+ ++....-||.-++.+|++..+...
T Consensus 216 ~~a~~a~~ralqLdp~~---v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~l 292 (1018)
T KOG2002|consen 216 EKALLAFERALQLDPTC---VSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHL 292 (1018)
T ss_pred hhHHHHHHHHHhcChhh---HHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHH
Confidence 44556677888877744 446666776666444 4778888888887764 445567789999999999988877
Q ss_pred Hhhhhhc----------cCcchhHHHHHhhcCChhHHHHHHHHhhhcCCCC-hhhHHHHHHHHHhccCHHHHHHHHHHHH
Q 002716 438 LNSVISS----------VTPLGWMYQERSLYCEGDKRWEDLDKATALDPTL-SYPYMYRASSLMTKQNVEAALAEINRIL 506 (889)
Q Consensus 438 ~~~~~~~----------~~~~g~~~~~~~~~~~~~~A~~~~~~al~~dp~~-~~a~~~la~~~~~~g~~~~Al~~l~kal 506 (889)
...++.. +-.+|.+|..+|.| ++|..+|.++++.+|++ ..+++.+|..++..|+++.|+..|++++
T Consensus 293 a~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~---ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~ 369 (1018)
T KOG2002|consen 293 AEHAIKNTENKSIKAESFYQLGRSYHAQGDF---EKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVL 369 (1018)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHhhccH---HHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHH
Confidence 6655532 33478889999999 99999999999999998 8899999999999999999999999999
Q ss_pred cCCC-CHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhc
Q 002716 507 GFKL-ALECLELRFCFFLALE----DYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRW 581 (889)
Q Consensus 507 ~~~p-~~~~l~~~a~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~ 581 (889)
...| +.+.+..+|.+|...+ ..+.|.....+++...|.+. ++|..++.++.....|.. +..+
T Consensus 370 k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~------~a~l~laql~e~~d~~~s-L~~~------ 436 (1018)
T KOG2002|consen 370 KQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDS------EAWLELAQLLEQTDPWAS-LDAY------ 436 (1018)
T ss_pred HhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccH------HHHHHHHHHHHhcChHHH-HHHH------
Confidence 9999 8999999999998775 67889999999999999998 899999998887766655 5555
Q ss_pred ccccccchHHHHHHHHh-----cCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc-----CCCc-----HHHHHHHHH
Q 002716 582 SSVDDIGSLSVIYQMLE-----SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH-----AASD-----HERLVYEGW 646 (889)
Q Consensus 582 ~~~dd~~sl~~~~~al~-----~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~-----~p~~-----~~~~~~lg~ 646 (889)
..++. ..+--++.+.++|..++..|++..|...|..|+.. +++. ....|++|.
T Consensus 437 ------------~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlar 504 (1018)
T KOG2002|consen 437 ------------GNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLAR 504 (1018)
T ss_pred ------------HHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHH
Confidence 44442 23455788999999999999999999999999876 2222 235899999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCch----hHHHHHHHHH
Q 002716 647 ILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK----GQALNNLGSV 721 (889)
Q Consensus 647 ~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~----~~~~~~Lg~~ 721 (889)
++...++++.|.+.|..+++..|++ .++..++....+.+ ...+|...+..+++- +.++..+|..
T Consensus 505 l~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~-----------~~~ea~~~lk~~l~~d~~np~arsl~G~~ 573 (1018)
T KOG2002|consen 505 LLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKN-----------NLYEASLLLKDALNIDSSNPNARSLLGNL 573 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhcc-----------CcHHHHHHHHHHHhcccCCcHHHHHHHHH
Confidence 9999999999999999999999999 99999986655666 666777777766332 7899999999
Q ss_pred HHHcCChHHHHHHHHHHHccC---cc-hHHHHHHHHHHH------------cCCHHHHHHHHHHHHHHhccCHHHHHHHH
Q 002716 722 YVDCGQLDLAADCYSNALKIR---HT-RAHQGLARVHFL------------KNNKTTAYEEMTKLIKKARNNASAYEKRS 785 (889)
Q Consensus 722 y~~~g~~~~A~~~~~~al~~~---p~-~a~~~La~~~~~------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 785 (889)
|....++..|..-|+..++.- ++ .+...||.+++. .+.+++|++.|.+++..+|.|.++.++.|
T Consensus 574 ~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIg 653 (1018)
T KOG2002|consen 574 HLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIG 653 (1018)
T ss_pred HHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchh
Confidence 999999999999777766543 33 788889987764 46688999999999999999999888877
Q ss_pred hc----CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHcCCHH
Q 002716 786 EY----CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKA---DLHLLHLRAAFHEHTGDVL 858 (889)
Q Consensus 786 ~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p---~~~~l~l~a~~~~~~g~~~ 858 (889)
.. |++.+|+..|.++.+--.++..+|.++|.+|..+|+|..|++.|+.++...- +..+++.++.++...|++.
T Consensus 654 iVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~ 733 (1018)
T KOG2002|consen 654 IVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQ 733 (1018)
T ss_pred hhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHH
Confidence 73 8999999999999998888899999999999999999999999999987543 4588888888887779999
Q ss_pred HHHHHHHHHHccCCCCHHHH
Q 002716 859 GALRDCRAALSVDPNDQEML 878 (889)
Q Consensus 859 ~A~~~~~~al~l~P~~~~~l 878 (889)
+|.+...+|+.+.|.++.+.
T Consensus 734 eak~~ll~a~~~~p~~~~v~ 753 (1018)
T KOG2002|consen 734 EAKEALLKARHLAPSNTSVK 753 (1018)
T ss_pred HHHHHHHHHHHhCCccchHH
Confidence 99999999999999998765
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-26 Score=274.92 Aligned_cols=492 Identities=13% Similarity=0.000 Sum_probs=355.8
Q ss_pred HHHHHHhhhHHHhcccHHHHHHHHHHHHHcCc--chhHhhHHHHHhhcCCcHHHHHHHhhhhhccCcchhHHHHHhhcCC
Q 002716 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCE 460 (889)
Q Consensus 383 ~~a~~~lG~~~~~~g~~~eA~~~~~~al~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~~~ 460 (889)
...++..|..+..+|++++|+..|+++++..+ ......+++++...|+.++|...+.+.+...+...+.+........
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i~~ 123 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAIPV 123 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHhcc
Confidence 45677788888899999999999999998754 4567889999999999999999999999998877776665555555
Q ss_pred hhHHHHHHHHhhhcCCCChhhHHHHHHH--------HHhccCHHHHHHHHHHHHcCCCCHHHHHH-HHHHHHhcccHHHH
Q 002716 461 GDKRWEDLDKATALDPTLSYPYMYRASS--------LMTKQNVEAALAEINRILGFKLALECLEL-RFCFFLALEDYQAA 531 (889)
Q Consensus 461 ~~~A~~~~~~al~~dp~~~~a~~~la~~--------~~~~g~~~~Al~~l~kal~~~p~~~~l~~-~a~~~~~~g~~~~A 531 (889)
.++|+..|+++++.+|++..+++.++.. |.+.++..+|+. .+.+..+|.+..+.+ ++.+|..+|++++|
T Consensus 124 ~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~A 201 (987)
T PRK09782 124 EVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQA 201 (987)
T ss_pred ChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHH
Confidence 5999999999999999999999999998 777777777776 555555554554444 49999999999999
Q ss_pred HHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHH-hhchhHHHHHHHhhhh------------cccccccc-hH---HHHH
Q 002716 532 LCDVQAILTLSPDYRMFEGRVAASQLHMLVREH-IDNWTIADCWLQLYDR------------WSSVDDIG-SL---SVIY 594 (889)
Q Consensus 532 ~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~-~~~~~~A~~~~~l~~~------------~~~~dd~~-sl---~~~~ 594 (889)
+..++++++..|.+. .....++.+|.. +++ +++..+++...+ +...++.. .. ..+.
T Consensus 202 i~lL~~L~k~~pl~~------~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~ 274 (987)
T PRK09782 202 DTLYNEARQQNTLSA------AERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENK 274 (987)
T ss_pred HHHHHHHHhcCCCCH------HHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 999999999999998 677788888887 466 666555421000 00011100 00 0111
Q ss_pred HHHhcCCCChHHHH-----------------------------HHHHHHHHhCCHH------------------------
Q 002716 595 QMLESDAPKGVLYF-----------------------------RQSLLLLRLNCPE------------------------ 621 (889)
Q Consensus 595 ~al~~~p~~~~~~~-----------------------------~la~~~~~~g~~~------------------------ 621 (889)
.....+|.+...++ .+...+...++++
T Consensus 275 ~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 354 (987)
T PRK09782 275 PLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVA 354 (987)
T ss_pred ccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccc
Confidence 11111122222222 1233334444444
Q ss_pred -----HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh----HHHHHHHHHHHHcCCCCCcc-
Q 002716 622 -----AAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF----EAFFLKAYALADSSQDSSCS- 691 (889)
Q Consensus 622 -----~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~----~a~~~la~~~~~~~~~~~~~- 691 (889)
+|....+...+..|.+..++...+....+.|+.++|...+++++...++- .....++.++.....-....
T Consensus 355 ~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 434 (987)
T PRK09782 355 TRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK 434 (987)
T ss_pred cCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence 33333444455568888899999999999999999999999998763332 12335565555543200000
Q ss_pred -------------hhhh--------------------------------------hhHHHHhcchhhhCch---hHHHHH
Q 002716 692 -------------STVV--------------------------------------SLLEDALKCPSDRLRK---GQALNN 717 (889)
Q Consensus 692 -------------~~~~--------------------------------------~~~~~Al~~~~~~~~~---~~~~~~ 717 (889)
.... ...++|+..+.+.... ......
T Consensus 435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~Pd~~~~L~ 514 (987)
T PRK09782 435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPDAWQHRA 514 (987)
T ss_pred HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhCCchHHHHH
Confidence 0000 0122344433333111 222334
Q ss_pred HHHHHHHcCChHHHHHHHHHHHccCcc-hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHh-c---CCHHH
Q 002716 718 LGSVYVDCGQLDLAADCYSNALKIRHT-RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSE-Y---CDREL 792 (889)
Q Consensus 718 Lg~~y~~~g~~~~A~~~~~~al~~~p~-~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~---~~~~~ 792 (889)
+|.++...|++++|+..|+++....|. ..+..+|.++...|++++|...++++++..|.....+...+. . |++++
T Consensus 515 lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~e 594 (987)
T PRK09782 515 VAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPEL 594 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHH
Confidence 455556788888888888888776555 667788888899999999999999999988877766655443 4 99999
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 002716 793 TRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLH-LLHLRAAFHEHTGDVLGALRDCRAALSVD 871 (889)
Q Consensus 793 A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~-~l~l~a~~~~~~g~~~~A~~~~~~al~l~ 871 (889)
|+..|+++++++|+ ..++..+|.++.+.|++++|+..|++++..+|+.. ....++.++...|++++|+..|+++++++
T Consensus 595 Al~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 595 ALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL 673 (987)
T ss_pred HHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 99999999999996 99999999999999999999999999999999974 44588888888999999999999999999
Q ss_pred CCCHHHHHHHHhh
Q 002716 872 PNDQEMLELHSRV 884 (889)
Q Consensus 872 P~~~~~l~l~~~~ 884 (889)
|++++++..++.+
T Consensus 674 P~~~~a~~nLA~a 686 (987)
T PRK09782 674 PDDPALIRQLAYV 686 (987)
T ss_pred CCCHHHHHHHHHH
Confidence 9999887665544
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-25 Score=264.96 Aligned_cols=334 Identities=14% Similarity=0.055 Sum_probs=247.0
Q ss_pred hHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 002716 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILT 540 (889)
Q Consensus 462 ~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~ 540 (889)
++|+..+..++...|+.+.+++.+|.+....|++++|+..+++++..+| ++.++..+|.++...|++++|+..|++++.
T Consensus 59 ~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~ 138 (656)
T PRK15174 59 DVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWL 138 (656)
T ss_pred chhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6777777777788888888888888888888888888888888888888 777888888888888888888888888888
Q ss_pred hCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCH
Q 002716 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP 620 (889)
Q Consensus 541 ~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 620 (889)
++|++. .++..++.++...|++++|...+ .+++...|+++.++..++ .+...|++
T Consensus 139 l~P~~~------~a~~~la~~l~~~g~~~eA~~~~------------------~~~~~~~P~~~~a~~~~~-~l~~~g~~ 193 (656)
T PRK15174 139 AFSGNS------QIFALHLRTLVLMDKELQAISLA------------------RTQAQEVPPRGDMIATCL-SFLNKSRL 193 (656)
T ss_pred hCCCcH------HHHHHHHHHHHHCCChHHHHHHH------------------HHHHHhCCCCHHHHHHHH-HHHHcCCH
Confidence 888877 67777888888888888886555 777777787777776654 36777888
Q ss_pred HHHHHHHHHHHHcCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhhhHH
Q 002716 621 EAAMRSLQLARQHAAS-DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLE 699 (889)
Q Consensus 621 ~~A~~~l~~al~~~p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~ 699 (889)
++|+..++++++..|. .......++.++...|++++|+..|++++..+|++.
T Consensus 194 ~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~--------------------------- 246 (656)
T PRK15174 194 PEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGA--------------------------- 246 (656)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH---------------------------
Confidence 8888888887777653 333445567777788888888888888887777651
Q ss_pred HHhcchhhhCchhHHHHHHHHHHHHcCChHH----HHHHHHHHHccCcc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 002716 700 DALKCPSDRLRKGQALNNLGSVYVDCGQLDL----AADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKK 773 (889)
Q Consensus 700 ~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~----A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~ 773 (889)
.++.++|.++...|++++ |+..|+++++.+|+ .++..+|.++...|++++|+..++++++.
T Consensus 247 -------------~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l 313 (656)
T PRK15174 247 -------------ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT 313 (656)
T ss_pred -------------HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 244455555555666653 67777777777776 66677777777777777777777777777
Q ss_pred hccCHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 002716 774 ARNNASAYEKRSEY----CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLRAA 849 (889)
Q Consensus 774 ~~~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~l~l~a~ 849 (889)
.|+++.++..++.. |++++|+..|++++..+|++...+..+|.++...|++++|+..|+++++..|+..
T Consensus 314 ~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------- 386 (656)
T PRK15174 314 HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------- 386 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc-------
Confidence 77666655555442 6777888888888888888777777778888888889999998888888888752
Q ss_pred HHHHcCCHHHHHHHHHHHHccC
Q 002716 850 FHEHTGDVLGALRDCRAALSVD 871 (889)
Q Consensus 850 ~~~~~g~~~~A~~~~~~al~l~ 871 (889)
..++++|+..|.++++.-
T Consensus 387 ----~~~~~ea~~~~~~~~~~~ 404 (656)
T PRK15174 387 ----PQSFEEGLLALDGQISAV 404 (656)
T ss_pred ----hhhHHHHHHHHHHHHHhc
Confidence 145556666666666544
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.9e-26 Score=268.58 Aligned_cols=332 Identities=12% Similarity=-0.002 Sum_probs=294.5
Q ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHH
Q 002716 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQL 557 (889)
Q Consensus 479 ~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~ 557 (889)
.......+......|++++|+..++.++...| +.++++.+|.+....|++++|+..|++++..+|++. .++..
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~------~a~~~ 115 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQP------EDVLL 115 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCCh------HHHHH
Confidence 33455567778899999999999999999999 899999999999999999999999999999999998 88999
Q ss_pred HHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc
Q 002716 558 HMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD 637 (889)
Q Consensus 558 lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~ 637 (889)
+|.++...|++++|+..+ +++++.+|+++.++..+|.++...|++++|+..+++++...|++
T Consensus 116 la~~l~~~g~~~~Ai~~l------------------~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~ 177 (656)
T PRK15174 116 VASVLLKSKQYATVADLA------------------EQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR 177 (656)
T ss_pred HHHHHHHcCCHHHHHHHH------------------HHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC
Confidence 999999999999997776 99999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHH
Q 002716 638 HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALN 716 (889)
Q Consensus 638 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~ 716 (889)
+.++..++ .+...|++++|+..++++++.+|.. . ....
T Consensus 178 ~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~----------------------------------------~~~~ 216 (656)
T PRK15174 178 GDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQ----------------------------------------ESAG 216 (656)
T ss_pred HHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcch----------------------------------------hHHH
Confidence 88877664 4788999999999999888765432 1 1234
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHccCcc--hHHHHHHHHHHHcCCHHH----HHHHHHHHHHHhccCHHHHHHHHhc---
Q 002716 717 NLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTT----AYEEMTKLIKKARNNASAYEKRSEY--- 787 (889)
Q Consensus 717 ~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~----A~~~~~~al~~~~~~~~~~~~~~~~--- 787 (889)
.++.++...|++++|+..|++++...|+ .++..+|.++...|++++ |+..++++++..|++..++..++..
T Consensus 217 ~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~ 296 (656)
T PRK15174 217 LAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR 296 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 4567788899999999999999999998 888999999999999986 8999999999999999888887773
Q ss_pred -CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHcCCHHHHHHHHH
Q 002716 788 -CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCR 865 (889)
Q Consensus 788 -~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~l~-l~a~~~~~~g~~~~A~~~~~ 865 (889)
|++++|+..++++++++|+++.++..+|.++.+.|++++|+..|++++...|+...+. ..+.++...|++++|+..|+
T Consensus 297 ~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~ 376 (656)
T PRK15174 297 TGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFE 376 (656)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999874443 56778888899999999999
Q ss_pred HHHccCCCCH
Q 002716 866 AALSVDPNDQ 875 (889)
Q Consensus 866 ~al~l~P~~~ 875 (889)
++++.+|++.
T Consensus 377 ~al~~~P~~~ 386 (656)
T PRK15174 377 HYIQARASHL 386 (656)
T ss_pred HHHHhChhhc
Confidence 9999998853
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-25 Score=268.86 Aligned_cols=386 Identities=12% Similarity=-0.015 Sum_probs=320.3
Q ss_pred hHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 002716 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILT 540 (889)
Q Consensus 462 ~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~ 540 (889)
++|+..+.++...+|....++..+|.++...|++++|+..+++++..+| ++.++..++.++...|++++|+..++++++
T Consensus 32 ~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~ 111 (765)
T PRK10049 32 AEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVS 111 (765)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888889999888999999999999999999999999999999999999 899999999999999999999999999999
Q ss_pred hCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCH
Q 002716 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP 620 (889)
Q Consensus 541 ~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 620 (889)
.+|++. . +..+|.++...|++++|+..+ +++++..|+++.++..+|.++...|..
T Consensus 112 ~~P~~~------~-~~~la~~l~~~g~~~~Al~~l------------------~~al~~~P~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 112 GAPDKA------N-LLALAYVYKRAGRHWDELRAM------------------TQALPRAPQTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred hCCCCH------H-HHHHHHHHHHCCCHHHHHHHH------------------HHHHHhCCCCHHHHHHHHHHHHHCCCh
Confidence 999999 7 888999999999999997777 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCcHH-----HHHHHHHHHH-----hcCCH---HHHHHHHHHHHhc---CCCh-----HHHHHHHH
Q 002716 621 EAAMRSLQLARQHAASDHE-----RLVYEGWILY-----DTSHC---EEGLRKAEESIQM---KRSF-----EAFFLKAY 679 (889)
Q Consensus 621 ~~A~~~l~~al~~~p~~~~-----~~~~lg~~~~-----~~g~~---~eA~~~~~~al~~---~p~~-----~a~~~la~ 679 (889)
++|+..++++.. .|.... ....+..+.. ..+++ ++|++.++.+++. +|+. .+......
T Consensus 167 e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~ 245 (765)
T PRK10049 167 APALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG 245 (765)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH
Confidence 999999998776 554211 1222222222 22334 7899999999865 3333 12222122
Q ss_pred HHHHcCCCCCcchhhhhhHHHHhcchhhhCc-----hhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc------hHHH
Q 002716 680 ALADSSQDSSCSSTVVSLLEDALKCPSDRLR-----KGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT------RAHQ 748 (889)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~-----~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~------~a~~ 748 (889)
.+...+ .+++|+..|+..+. +..+...+|.+|...|++++|+..|+++++..|. ....
T Consensus 246 ~Ll~~g-----------~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~ 314 (765)
T PRK10049 246 ALLARD-----------RYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELA 314 (765)
T ss_pred HHHHhh-----------hHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHH
Confidence 334556 78888888887743 2344555799999999999999999999988764 3566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhccC-------------H--HHHHHHHh----cCCHHHHHHHHHHHHhcCCCChH
Q 002716 749 GLARVHFLKNNKTTAYEEMTKLIKKARNN-------------A--SAYEKRSE----YCDRELTRADLEMVTQLDPLRVY 809 (889)
Q Consensus 749 ~La~~~~~~g~~~~A~~~~~~al~~~~~~-------------~--~~~~~~~~----~~~~~~A~~~l~~al~l~p~~~~ 809 (889)
.++.++...|++++|+..++++....|.. . .++...+. -|+.++|+..+++++...|.++.
T Consensus 315 ~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~ 394 (765)
T PRK10049 315 DLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQG 394 (765)
T ss_pred HHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 78888999999999999999999987621 1 23333333 28999999999999999999999
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHhh
Q 002716 810 PYRYRAAVLMDSHKENEAIAELSRAIAFKADL-HLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRV 884 (889)
Q Consensus 810 ~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~-~~l~l~a~~~~~~g~~~~A~~~~~~al~l~P~~~~~l~l~~~~ 884 (889)
++..+|.++...|++++|+..++++++.+|+. ......+..+...|++++|...++++++..|+++.+..+-...
T Consensus 395 l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 395 LRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLARAR 470 (765)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999996 5555788889999999999999999999999999887654443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-25 Score=230.70 Aligned_cols=377 Identities=17% Similarity=0.108 Sum_probs=271.1
Q ss_pred hHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHcCcchhHhhHHHHHhhcCCcHHHHHHHhhhhhccCcchhHHHHHhh
Q 002716 378 TDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL 457 (889)
Q Consensus 378 ~~~~~~~a~~~lG~~~~~~g~~~eA~~~~~~al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~ 457 (889)
.....+.++-..|+-+++.|+|++||++|.+|++..+..+.. +.|.+-.|...+.
T Consensus 110 ~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiF-------------------------YsNraAcY~~lgd 164 (606)
T KOG0547|consen 110 ERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIF-------------------------YSNRAACYESLGD 164 (606)
T ss_pred HHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchh-------------------------hhhHHHHHHHHhh
Confidence 344557788899999999999999999999999987664321 2233445556666
Q ss_pred cCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHH------------------HHH------------c
Q 002716 458 YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEIN------------------RIL------------G 507 (889)
Q Consensus 458 ~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~------------------kal------------~ 507 (889)
+ ++-+++..+|++++|+...+++.++..+-..|++++|+.... +.| +
T Consensus 165 ~---~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k 241 (606)
T KOG0547|consen 165 W---EKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLK 241 (606)
T ss_pred H---HHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhc
Confidence 6 888899999999999999999999999999999999876442 111 1
Q ss_pred --CCC---CHHH---H----------------------HHHHHHHHhc---ccHHHHHHHHHHHHHhC-----CC--Ccc
Q 002716 508 --FKL---ALEC---L----------------------ELRFCFFLAL---EDYQAALCDVQAILTLS-----PD--YRM 547 (889)
Q Consensus 508 --~~p---~~~~---l----------------------~~~a~~~~~~---g~~~~A~~~~~~al~~~-----p~--~~~ 547 (889)
..| ++.. + ..-+.-++.. ..|..|...+.+..... -+ +..
T Consensus 242 ~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~ 321 (606)
T KOG0547|consen 242 ENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAE 321 (606)
T ss_pred ccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchh
Confidence 011 0000 0 0000001111 24555555444433211 11 111
Q ss_pred hhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHH
Q 002716 548 FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSL 627 (889)
Q Consensus 548 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l 627 (889)
...-+.++.+.|..+...|++-.|..-| ..+|.++|.....|..+|.+|...++.++-...|
T Consensus 322 le~~A~al~~~gtF~fL~g~~~~a~~d~------------------~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F 383 (606)
T KOG0547|consen 322 LEYMAEALLLRGTFHFLKGDSLGAQEDF------------------DAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDF 383 (606)
T ss_pred HHHHHHHHHHhhhhhhhcCCchhhhhhH------------------HHHHhcCcccchHHHHHHHHHhhhhccHHHHHHH
Confidence 1111356667777777778777775555 9999999999999999999999999999999999
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchh
Q 002716 628 QLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPS 706 (889)
Q Consensus 628 ~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~ 706 (889)
++|.+++|.++++|+..|.+++-.+++++|+..|++++.++|++ -++..++.++
T Consensus 384 ~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~------------------------- 438 (606)
T KOG0547|consen 384 NKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCAL------------------------- 438 (606)
T ss_pred HHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHH-------------------------
Confidence 99999999999999999999999999999999999999999998 5455555444
Q ss_pred hhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc------CH
Q 002716 707 DRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARN------NA 778 (889)
Q Consensus 707 ~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~------~~ 778 (889)
++.++++++...|+.+.+..|. +.+...|.++..+++|++|++.|.++++..|. ++
T Consensus 439 ----------------Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~ 502 (606)
T KOG0547|consen 439 ----------------YRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNA 502 (606)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccc
Confidence 4444566666666666666666 56666666666666666666666666666664 33
Q ss_pred HHHHHHHhc-----CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCH
Q 002716 779 SAYEKRSEY-----CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL 841 (889)
Q Consensus 779 ~~~~~~~~~-----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~ 841 (889)
..+...+.. +++..|...+++|+++||..-.++..+|.+..++|+.++|+++|++++.+..+.
T Consensus 503 ~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~ 570 (606)
T KOG0547|consen 503 APLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTE 570 (606)
T ss_pred hhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhH
Confidence 222222221 677899999999999999999999999999999999999999999998776553
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-24 Score=226.27 Aligned_cols=399 Identities=14% Similarity=0.129 Sum_probs=301.8
Q ss_pred hccCcchhHHHHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHH
Q 002716 443 SSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCF 521 (889)
Q Consensus 443 ~~~~~~g~~~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~ 521 (889)
..+++.|.-++..+.| ++||.+|++||++.|+.+..|.+++.+|...|+|++.++...++++++| ...+++.++..
T Consensus 116 ~~lK~~GN~~f~~kkY---~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKY---DEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASA 192 (606)
T ss_pred HHHHhhhhhhhhcccH---HHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Confidence 3456788899999999 9999999999999999999999999999999999999999999999999 88999999999
Q ss_pred HHhcccHHHHHHHHHHHHHh--CCCCcchhhhHHHHHHHHHHHH--Hhh-c----hhHH---HHHHHhhhhc--cccc--
Q 002716 522 FLALEDYQAALCDVQAILTL--SPDYRMFEGRVAASQLHMLVRE--HID-N----WTIA---DCWLQLYDRW--SSVD-- 585 (889)
Q Consensus 522 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~a~~~lg~~~~--~~~-~----~~~A---~~~~~l~~~~--~~~d-- 585 (889)
+..+|++++|+.+..-.--. ..+......--+.+...|..-. ..+ + ...+ ..+|..|.-- ...+
T Consensus 193 ~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~ 272 (606)
T KOG0547|consen 193 HEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNK 272 (606)
T ss_pred HHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCC
Confidence 99999999999876543211 1111100000001111111100 000 0 0000 0111111100 0000
Q ss_pred ----cc---chHHH------------HHHHHh------cC-CCC---------hHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 002716 586 ----DI---GSLSV------------IYQMLE------SD-APK---------GVLYFRQSLLLLRLNCPEAAMRSLQLA 630 (889)
Q Consensus 586 ----d~---~sl~~------------~~~al~------~~-p~~---------~~~~~~la~~~~~~g~~~~A~~~l~~a 630 (889)
|. +.+.. +..+-+ .. ..+ ..++...|..++-.|++..|...|+.+
T Consensus 273 ~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~ 352 (606)
T KOG0547|consen 273 SDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAA 352 (606)
T ss_pred CccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHH
Confidence 00 00000 000000 00 111 455666777778888888888888888
Q ss_pred HHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCc
Q 002716 631 RQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLR 710 (889)
Q Consensus 631 l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~ 710 (889)
+.++|.+...+..+|.+|.+..+.++-...|.+|.+++|++.
T Consensus 353 I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~-------------------------------------- 394 (606)
T KOG0547|consen 353 IKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENP-------------------------------------- 394 (606)
T ss_pred HhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCC--------------------------------------
Confidence 888888888788888888888888888888888888888772
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhc-
Q 002716 711 KGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEY- 787 (889)
Q Consensus 711 ~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~- 787 (889)
.+|+..|.+++-.+++++|+..|++++.++|+ .++..++-+.+++++++++...|+.+++..|+.+..|...+..
T Consensus 395 --dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiL 472 (606)
T KOG0547|consen 395 --DVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEIL 472 (606)
T ss_pred --chhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 47888889999999999999999999999999 7888899999999999999999999999999988888776663
Q ss_pred ---CCHHHHHHHHHHHHhcCCC------ChHHHHHHHHHHH-hCCCHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHcCC
Q 002716 788 ---CDRELTRADLEMVTQLDPL------RVYPYRYRAAVLM-DSHKENEAIAELSRAIAFKADLHLLH-LRAAFHEHTGD 856 (889)
Q Consensus 788 ---~~~~~A~~~l~~al~l~p~------~~~~~~~la~~~~-~~g~~~eA~~~l~kal~~~p~~~~l~-l~a~~~~~~g~ 856 (889)
+++++|.+.|.+++.+.|. ++.++.+.|.+.. -.+++.+|+..+++|++++|..+..+ -++.+..++|+
T Consensus 473 tDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~ 552 (606)
T KOG0547|consen 473 TDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGK 552 (606)
T ss_pred hhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhh
Confidence 8999999999999999998 6666666665333 34899999999999999999986555 88999999999
Q ss_pred HHHHHHHHHHHHccCCCCHHHHHHHHhh
Q 002716 857 VLGALRDCRAALSVDPNDQEMLELHSRV 884 (889)
Q Consensus 857 ~~~A~~~~~~al~l~P~~~~~l~l~~~~ 884 (889)
.++|+++|+++..+...-.+++..|+-+
T Consensus 553 i~eAielFEksa~lArt~~E~~~a~s~a 580 (606)
T KOG0547|consen 553 IDEAIELFEKSAQLARTESEMVHAYSLA 580 (606)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 9999999999999998888888887643
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-23 Score=255.58 Aligned_cols=387 Identities=10% Similarity=-0.028 Sum_probs=307.2
Q ss_pred hHHHhcccHHHHHHHHHHHHHcCcchh--HhhHHHHHhhcCCcHHHHHHHhhhhhccCcchhHHHHHhhcCChhHHHHHH
Q 002716 391 CVRLLRKEYDEAEHLFEAAVNAGHIYS--IAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDL 468 (889)
Q Consensus 391 ~~~~~~g~~~eA~~~~~~al~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~ 468 (889)
.+..-.|++++|++.++++....+..+ +..+|.++...|+ + ++|+..+
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~---------------------------~---~~A~~~~ 72 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQ---------------------------W---QNSLTLW 72 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC---------------------------H---HHHHHHH
Confidence 355678999999999999886444433 5556655555554 4 7788889
Q ss_pred HHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcc
Q 002716 469 DKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (889)
Q Consensus 469 ~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 547 (889)
+++++++|+++.++..+|.++...|++++|+..+++++...| +.. +..+|.++...|++++|+..++++++.+|++.
T Consensus 73 ~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~- 150 (765)
T PRK10049 73 QKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQ- 150 (765)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-
Confidence 999999999999999999999999999999999999999999 778 88999999999999999999999999999998
Q ss_pred hhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCC----------ChHHHHHHHHHHHHh
Q 002716 548 FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP----------KGVLYFRQSLLLLRL 617 (889)
Q Consensus 548 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~----------~~~~~~~la~~~~~~ 617 (889)
.++..++.++...+..++|+..+ +++.. .|. ...+...++......
T Consensus 151 -----~~~~~la~~l~~~~~~e~Al~~l------------------~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~ 206 (765)
T PRK10049 151 -----QYPTEYVQALRNNRLSAPALGAI------------------DDANL-TPAEKRDLEADAAAELVRLSFMPTRSEK 206 (765)
T ss_pred -----HHHHHHHHHHHHCCChHHHHHHH------------------HhCCC-CHHHHHHHHHHHHHHHHHhhcccccChh
Confidence 78888899999999999996666 43333 322 111111111111223
Q ss_pred CCH---HHHHHHHHHHHHcCCCcHHH-------HHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHc
Q 002716 618 NCP---EAAMRSLQLARQHAASDHER-------LVY-EGWILYDTSHCEEGLRKAEESIQMKRSF--EAFFLKAYALADS 684 (889)
Q Consensus 618 g~~---~~A~~~l~~al~~~p~~~~~-------~~~-lg~~~~~~g~~~eA~~~~~~al~~~p~~--~a~~~la~~~~~~ 684 (889)
+++ ++|+..++.+++..|.++.. ... +| .++..|++++|+..|+++++..|.. .+...++.++...
T Consensus 207 ~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~-~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~ 285 (765)
T PRK10049 207 ERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG-ALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKL 285 (765)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH-HHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhc
Confidence 344 77888888888664433322 122 33 3467789999999999988876432 2334457788888
Q ss_pred CCCCCcchhhhhhHHHHhcchhhhCch--------hHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc------------
Q 002716 685 SQDSSCSSTVVSLLEDALKCPSDRLRK--------GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT------------ 744 (889)
Q Consensus 685 ~~~~~~~~~~~~~~~~Al~~~~~~~~~--------~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~------------ 744 (889)
+ .+++|+..+.+.+.. ......++.++...|++++|+..++++....|.
T Consensus 286 g-----------~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p 354 (765)
T PRK10049 286 H-----------QPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIP 354 (765)
T ss_pred C-----------CcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCC
Confidence 8 777777777665221 245677888899999999999999999988762
Q ss_pred -----hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 002716 745 -----RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEY----CDRELTRADLEMVTQLDPLRVYPYRYRA 815 (889)
Q Consensus 745 -----~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la 815 (889)
.++..+|.++...|++++|++.+++++...|.+..++..++.. |+.++|+..+++++.++|++...+..+|
T Consensus 355 ~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a 434 (765)
T PRK10049 355 NDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQA 434 (765)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Confidence 3567899999999999999999999999999999998888873 8999999999999999999999999999
Q ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCHHHHH
Q 002716 816 AVLMDSHKENEAIAELSRAIAFKADLHLLH 845 (889)
Q Consensus 816 ~~~~~~g~~~eA~~~l~kal~~~p~~~~l~ 845 (889)
.++...|++++|...++++++..|++....
T Consensus 435 ~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 435 WTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 999999999999999999999999985554
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.1e-22 Score=200.43 Aligned_cols=324 Identities=18% Similarity=0.167 Sum_probs=241.6
Q ss_pred chhHHHHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcc
Q 002716 448 LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALE 526 (889)
Q Consensus 448 ~g~~~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g 526 (889)
+|..+..++.+ ..|+..|..|++.||++..+++.+|.+|+..|+-.-|+..+.+++++.| ...+...+|.+++++|
T Consensus 44 lGk~lla~~Q~---sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 44 LGKELLARGQL---SDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHhhhH---HHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcc
Confidence 55666677777 8999999999999999999999999999999999999999999999999 7778889999999999
Q ss_pred cHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHH
Q 002716 527 DYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL 606 (889)
Q Consensus 527 ~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~ 606 (889)
++++|+.+|+++|..+|++.... ++...++.+........++..++ .+.|-...+..+.+.+++.|.++..
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~---eaqskl~~~~e~~~l~~ql~s~~------~~GD~~~ai~~i~~llEi~~Wda~l 191 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVL---EAQSKLALIQEHWVLVQQLKSAS------GSGDCQNAIEMITHLLEIQPWDASL 191 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhH---HHHHHHHhHHHHHHHHHHHHHHh------cCCchhhHHHHHHHHHhcCcchhHH
Confidence 99999999999999999765221 23333444433333333333332 2223333466669999999999999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCC
Q 002716 607 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQ 686 (889)
Q Consensus 607 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~ 686 (889)
+...+.+|...|++..|+..++.+-++..++.+.++.++.+++..|+.+.++...+++++++|++...+-. |....
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~---YKklk- 267 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPF---YKKLK- 267 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHH---HHHHH-
Confidence 99999999999999999999999999999999999999999999999999999999999999998211100 00000
Q ss_pred CCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc------hHHHHHHHHHHHcCCH
Q 002716 687 DSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT------RAHQGLARVHFLKNNK 760 (889)
Q Consensus 687 ~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~------~a~~~La~~~~~~g~~ 760 (889)
++.+.++ -+.-....++|.++++..++.++.+|+ ..+..+-.++...|++
T Consensus 268 ------Kv~K~le------------------s~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~ 323 (504)
T KOG0624|consen 268 ------KVVKSLE------------------SAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQF 323 (504)
T ss_pred ------HHHHHHH------------------HHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCH
Confidence 0000111 122234567788888888888888877 3333455566666667
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 002716 761 TTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKAD 840 (889)
Q Consensus 761 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~ 840 (889)
.+|+..+..+++.+|+++.++..+|.+|+-...|+.||..|++|.+.+++
T Consensus 324 ------------------------------~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 324 ------------------------------GEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred ------------------------------HHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 55555555555566666666666666666666666666666666666665
Q ss_pred H
Q 002716 841 L 841 (889)
Q Consensus 841 ~ 841 (889)
+
T Consensus 374 n 374 (504)
T KOG0624|consen 374 N 374 (504)
T ss_pred c
Confidence 4
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.9e-21 Score=225.57 Aligned_cols=428 Identities=12% Similarity=-0.003 Sum_probs=322.8
Q ss_pred HHHHhhhHHHhcccHHHHHHHHHHHHHcCcchh--HhhHHHHHhhcCCcHHHHHHHhhhhhccCcchhHHHHHhhcCChh
Q 002716 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYS--IAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGD 462 (889)
Q Consensus 385 a~~~lG~~~~~~g~~~eA~~~~~~al~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 462 (889)
..+..+.+.+++|++++|+..|+++++..+..+ ...++.++...|+ + +
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~---------------------------~---~ 85 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGR---------------------------D---Q 85 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCC---------------------------c---H
Confidence 567778899999999999999999998776542 3344444443333 3 7
Q ss_pred HHHHHHHHhhhcCCCChhhHHHH--HHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 002716 463 KRWEDLDKATALDPTLSYPYMYR--ASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAIL 539 (889)
Q Consensus 463 ~A~~~~~~al~~dp~~~~a~~~l--a~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al 539 (889)
+|+..+++++ +|.+...+..+ |.++..+|++++|++.|+++++.+| +++++..++..+...++.++|+..++++.
T Consensus 86 ~A~~~~eka~--~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~ 163 (822)
T PRK14574 86 EVIDVYERYQ--SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELA 163 (822)
T ss_pred HHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhc
Confidence 7777788888 55454444444 7789999999999999999999999 88888888888899999999999999999
Q ss_pred HhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCC
Q 002716 540 TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNC 619 (889)
Q Consensus 540 ~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~ 619 (889)
..+|.+. . +..++.++...++..+|+..+ +++++.+|++..++..+..++...|-
T Consensus 164 ~~dp~~~------~-~l~layL~~~~~~~~~AL~~~------------------ekll~~~P~n~e~~~~~~~~l~~~~~ 218 (822)
T PRK14574 164 ERDPTVQ------N-YMTLSYLNRATDRNYDALQAS------------------SEAVRLAPTSEEVLKNHLEILQRNRI 218 (822)
T ss_pred ccCcchH------H-HHHHHHHHHhcchHHHHHHHH------------------HHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 9888865 2 244455555566666675555 99999999999999999999999998
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHH--HHHHHhc---------C---CHHHHHHHHHHHHh---cCCCh-----HHHHHH
Q 002716 620 PEAAMRSLQLARQHAASDHERLVYE--GWILYDT---------S---HCEEGLRKAEESIQ---MKRSF-----EAFFLK 677 (889)
Q Consensus 620 ~~~A~~~l~~al~~~p~~~~~~~~l--g~~~~~~---------g---~~~eA~~~~~~al~---~~p~~-----~a~~~l 677 (889)
...|.+...+--+........+... +.-..+. + -.+.|+..++..+. ..|.. .+..-.
T Consensus 219 ~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Dr 298 (822)
T PRK14574 219 VEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDR 298 (822)
T ss_pred cHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHH
Confidence 8888876654322221111111111 1111111 1 34567777777776 34543 223334
Q ss_pred HHHHHHcCCCCCcchhhhhhHHHHhcchhhhC-----chhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--------
Q 002716 678 AYALADSSQDSSCSSTVVSLLEDALKCPSDRL-----RKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-------- 744 (889)
Q Consensus 678 a~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~-----~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~-------- 744 (889)
-.++...+ +..++++.|+... -+..+....|..|...++.++|+..|+.++...+.
T Consensus 299 l~aL~~r~-----------r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~ 367 (822)
T PRK14574 299 LGALLVRH-----------QTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDL 367 (822)
T ss_pred HHHHHHhh-----------hHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcch
Confidence 44555566 7888888887763 13667888999999999999999999999886522
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc------------cCH---HHHHHHHh----cCCHHHHHHHHHHHHhcCC
Q 002716 745 RAHQGLARVHFLKNNKTTAYEEMTKLIKKAR------------NNA---SAYEKRSE----YCDRELTRADLEMVTQLDP 805 (889)
Q Consensus 745 ~a~~~La~~~~~~g~~~~A~~~~~~al~~~~------------~~~---~~~~~~~~----~~~~~~A~~~l~~al~l~p 805 (889)
.....|-..|...+++++|..++++..+..| +|+ .....++. -|+..+|.+.+++.+...|
T Consensus 368 ~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP 447 (822)
T PRK14574 368 LDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAP 447 (822)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3356788999999999999999999998655 111 12222222 2899999999999999999
Q ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHH
Q 002716 806 LRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLL-HLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLEL 880 (889)
Q Consensus 806 ~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~l-~l~a~~~~~~g~~~~A~~~~~~al~l~P~~~~~l~l 880 (889)
.+......+|.++...|.+.+|...++.+..+.|++..+ ...+..+..+|++.+|.....++++..|+++.+.++
T Consensus 448 ~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~l 523 (822)
T PRK14574 448 ANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQEL 523 (822)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHHH
Confidence 999999999999999999999999999999999997444 478888888999999999999999999999988764
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=222.42 Aligned_cols=301 Identities=15% Similarity=0.147 Sum_probs=252.1
Q ss_pred HHHHHHHH--HhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHH
Q 002716 482 YMYRASSL--MTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLH 558 (889)
Q Consensus 482 ~~~la~~~--~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l 558 (889)
+..+|..| ..+-+..+|+..|.+.-...+ ...++..+|..|+.+++|++|..+|+.+-+.+|-.. +..-..
T Consensus 320 lr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv------~~meiy 393 (638)
T KOG1126|consen 320 LRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRV------KGMEIY 393 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc------cchhHH
Confidence 33444444 455577899999999555555 567788899999999999999999999999998766 444444
Q ss_pred HHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcH
Q 002716 559 MLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH 638 (889)
Q Consensus 559 g~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~ 638 (889)
..+.++.++--+- .++ .+..+..+|..|+.|..+|.+|.-+++++.|+++|++|++++|...
T Consensus 394 ST~LWHLq~~v~L-s~L-----------------aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~fa 455 (638)
T KOG1126|consen 394 STTLWHLQDEVAL-SYL-----------------AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFA 455 (638)
T ss_pred HHHHHHHHhhHHH-HHH-----------------HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccc
Confidence 5555555442221 111 1677889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHH
Q 002716 639 ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNL 718 (889)
Q Consensus 639 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~L 718 (889)
.++..+|.-+..+..+|.|...|+.|+..+|.+- .+|+.+
T Consensus 456 YayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY----------------------------------------nAwYGl 495 (638)
T KOG1126|consen 456 YAYTLLGHESIATEEFDKAMKSFRKALGVDPRHY----------------------------------------NAWYGL 495 (638)
T ss_pred hhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhh----------------------------------------HHHHhh
Confidence 9999999999999999999999999998888762 377788
Q ss_pred HHHHHHcCChHHHHHHHHHHHccCcc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhcCCHHHHHHH
Q 002716 719 GSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRAD 796 (889)
Q Consensus 719 g~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~A~~~ 796 (889)
|.+|.++++++.|.-.|++|++++|. .....+|.++.+.|+. ++|+..
T Consensus 496 G~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~------------------------------d~AL~~ 545 (638)
T KOG1126|consen 496 GTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRK------------------------------DKALQL 545 (638)
T ss_pred hhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhh------------------------------hHHHHH
Confidence 88888899999999999999999998 6777789999999988 666667
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 002716 797 LEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL-HLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQ 875 (889)
Q Consensus 797 l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~-~~l~l~a~~~~~~g~~~~A~~~~~~al~l~P~~~ 875 (889)
+++|+.+||.++-..+..|.++...+++++|+..+++.-++-|+. .++.+.+.+|.++|+.+.|+..|.=|++++|.-.
T Consensus 546 ~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 546 YEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 777788888999999999999999999999999999999999997 4555999999999999999999999999999866
Q ss_pred H
Q 002716 876 E 876 (889)
Q Consensus 876 ~ 876 (889)
+
T Consensus 626 ~ 626 (638)
T KOG1126|consen 626 Q 626 (638)
T ss_pred h
Confidence 6
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-21 Score=208.12 Aligned_cols=409 Identities=14% Similarity=0.116 Sum_probs=293.9
Q ss_pred chhHHHHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcc
Q 002716 448 LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALE 526 (889)
Q Consensus 448 ~g~~~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g 526 (889)
.|.+.+..+.| +.|+..|.+||.++|++...|.++..+|...|+|++|++.-.+.++++| -+..|..+|..++.+|
T Consensus 8 kgnaa~s~~d~---~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 8 KGNAAFSSGDF---ETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHHhhcccccH---HHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc
Confidence 35555666777 9999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred cHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhccccc-cc--------chHHHHHHHH
Q 002716 527 DYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVD-DI--------GSLSVIYQML 597 (889)
Q Consensus 527 ~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~d-d~--------~sl~~~~~al 597 (889)
+|++|+..|.+.|+.+|++. .....+..++.. ++.. ...++--.-|+.+. +. .....+.+.+
T Consensus 85 ~~~eA~~ay~~GL~~d~~n~------~L~~gl~~a~~~--~~~~-~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~ 155 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKDPSNK------QLKTGLAQAYLE--DYAA-DQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEII 155 (539)
T ss_pred cHHHHHHHHHHHhhcCCchH------HHHHhHHHhhhH--HHHh-hhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHh
Confidence 99999999999999999998 555566666511 1111 11110000011110 00 0112223334
Q ss_pred hcCCCChHHHHHHHHHHHHhCCHHHHH--HHHHHHH-----HcCC---------------------CcHHHHHHHHHHHH
Q 002716 598 ESDAPKGVLYFRQSLLLLRLNCPEAAM--RSLQLAR-----QHAA---------------------SDHERLVYEGWILY 649 (889)
Q Consensus 598 ~~~p~~~~~~~~la~~~~~~g~~~~A~--~~l~~al-----~~~p---------------------~~~~~~~~lg~~~~ 649 (889)
..+|.+...+.+--.+....|.....- ..+.... ...| ........+|...+
T Consensus 156 ~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaay 235 (539)
T KOG0548|consen 156 QKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAY 235 (539)
T ss_pred hcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHH
Confidence 444443332221100000000000000 0000000 0001 01224567899999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCch-----------hHHHHH
Q 002716 650 DTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK-----------GQALNN 717 (889)
Q Consensus 650 ~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~-----------~~~~~~ 717 (889)
...+++.|++.|..++.++ .. ..+.+.+.++...+ .+.+.+....++... ..+...
T Consensus 236 kkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~-----------~~~~c~~~c~~a~E~gre~rad~klIak~~~r 303 (539)
T KOG0548|consen 236 KKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERG-----------KYAECIELCEKAVEVGRELRADYKLIAKALAR 303 (539)
T ss_pred HhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhcc-----------HHHHhhcchHHHHHHhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 55 77778888888888 555555555444221 445566
Q ss_pred HHHHHHHcCChHHHHHHHHHHHccCcchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHh----cCCHHHH
Q 002716 718 LGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSE----YCDRELT 793 (889)
Q Consensus 718 Lg~~y~~~g~~~~A~~~~~~al~~~p~~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~----~~~~~~A 793 (889)
+|..|..+++++.|+.+|++++....+ ..+.......+++++......-.+|..+.-....|. .|++..|
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~A 377 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRT------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEA 377 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcC------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHH
Confidence 888999999999999999998876544 344455566777777777777677755433333333 2899999
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHccCC
Q 002716 794 RADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAALSVDP 872 (889)
Q Consensus 794 ~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~l~-l~a~~~~~~g~~~~A~~~~~~al~l~P 872 (889)
+..|.+++..+|+++..|.++|.+|.+.|.+..|+...+++++++|+..-.+ ..+.++..+.+|++|++.|+++++.+|
T Consensus 378 v~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp 457 (539)
T KOG0548|consen 378 VKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDP 457 (539)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999974444 568888888999999999999999999
Q ss_pred CCHHHHHHHHhhhc
Q 002716 873 NDQEMLELHSRVYS 886 (889)
Q Consensus 873 ~~~~~l~l~~~~~~ 886 (889)
++.++++.|.++.+
T Consensus 458 ~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 458 SNAEAIDGYRRCVE 471 (539)
T ss_pred hhHHHHHHHHHHHH
Confidence 99999999998764
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-22 Score=219.37 Aligned_cols=298 Identities=13% Similarity=0.067 Sum_probs=255.4
Q ss_pred hhHHHHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhccc
Q 002716 449 GWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALED 527 (889)
Q Consensus 449 g~~~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~ 527 (889)
|..|.....| ..++|+..|.+.-+.-++-.|....+|..|++.++|++|.+.|+.+-+..| ..+.......+++.+.+
T Consensus 324 ~~~~~~~s~y-~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~ 402 (638)
T KOG1126|consen 324 GEGYRSLSQY-NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD 402 (638)
T ss_pred HHHHHHHHHH-HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh
Confidence 3344433333 338899999997777788889999999999999999999999999999999 55555555555555555
Q ss_pred HHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHH
Q 002716 528 YQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLY 607 (889)
Q Consensus 528 ~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~ 607 (889)
--+--...+.++..+|+.+ ++|..+|.+|..+++++.|++.| +++++++|....+|
T Consensus 403 ~v~Ls~Laq~Li~~~~~sP------esWca~GNcfSLQkdh~~Aik~f------------------~RAiQldp~faYay 458 (638)
T KOG1126|consen 403 EVALSYLAQDLIDTDPNSP------ESWCALGNCFSLQKDHDTAIKCF------------------KRAIQLDPRFAYAY 458 (638)
T ss_pred hHHHHHHHHHHHhhCCCCc------HHHHHhcchhhhhhHHHHHHHHH------------------HHhhccCCccchhh
Confidence 4444455677889999999 99999999999999999999888 99999999999999
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCC
Q 002716 608 FRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQD 687 (889)
Q Consensus 608 ~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~ 687 (889)
..+|.-+.....+|.|+.+|+.|+..+|.+..+|+.+|.+|.++++++.|.-+|++|++++|.+.
T Consensus 459 TLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~ns--------------- 523 (638)
T KOG1126|consen 459 TLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNS--------------- 523 (638)
T ss_pred hhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccch---------------
Confidence 99999999999999999999999999999999999999999999999999999999999999873
Q ss_pred CCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--hHHHHHHHHHHHcCCHHHHHH
Q 002716 688 SSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYE 765 (889)
Q Consensus 688 ~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~ 765 (889)
.....+|.++.++|+.++|+..|++|+.++|. -..+..|.+++..+++++|+.
T Consensus 524 -------------------------vi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~ 578 (638)
T KOG1126|consen 524 -------------------------VILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQ 578 (638)
T ss_pred -------------------------hHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHH
Confidence 24566788999999999999999999999999 667789999999999966666
Q ss_pred HHHHHHHHhccCHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCH
Q 002716 766 EMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL 841 (889)
Q Consensus 766 ~~~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~ 841 (889)
.++++- ++-|+...++..+|.+|.+.|+.+.|+..|.-|..++|..
T Consensus 579 ~LEeLk------------------------------~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 579 ELEELK------------------------------ELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHH------------------------------HhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 555554 4456667778888999999999999999999999888874
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6e-21 Score=199.69 Aligned_cols=363 Identities=16% Similarity=0.080 Sum_probs=297.5
Q ss_pred HHHHHHhhhHHHhcccHHHHHHHHHHHHHcC--cchhHhhHHHHHhhcCCcHHHHHHHhhhhhccC---------cchhH
Q 002716 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVT---------PLGWM 451 (889)
Q Consensus 383 ~~a~~~lG~~~~~~g~~~eA~~~~~~al~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---------~~g~~ 451 (889)
...+|..|.++.+.|..+.|+..|..++..- +..++..|..+- ...+.+..++...+ ..+.+
T Consensus 164 ~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~li-------t~~e~~~~l~~~l~~~~h~M~~~F~~~a 236 (559)
T KOG1155|consen 164 EFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELI-------TDIEILSILVVGLPSDMHWMKKFFLKKA 236 (559)
T ss_pred hHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhh-------chHHHHHHHHhcCcccchHHHHHHHHHH
Confidence 4568899999999999999999999998732 333444444321 12233333332222 13456
Q ss_pred HHHHhhcCChhHHHHHHHHhhhc-CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHH
Q 002716 452 YQERSLYCEGDKRWEDLDKATAL-DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQ 529 (889)
Q Consensus 452 ~~~~~~~~~~~~A~~~~~~al~~-dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~ 529 (889)
+++.... ++++..+....+. .|++...-...|.+.+...++++|+..|+.+.+.+| ..+-+.+...+++..++-.
T Consensus 237 ~~el~q~---~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 237 YQELHQH---EEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHH---HHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 6666666 8888888888888 899999888999999999999999999999999999 7777777777777777766
Q ss_pred HHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHH
Q 002716 530 AALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFR 609 (889)
Q Consensus 530 ~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~ 609 (889)
+---.-+.+..++.--+ +....+|..|...++.++|+.+| +++++++|....+|..
T Consensus 314 kLs~LA~~v~~idKyR~------ETCCiIaNYYSlr~eHEKAv~YF------------------kRALkLNp~~~~aWTL 369 (559)
T KOG1155|consen 314 KLSYLAQNVSNIDKYRP------ETCCIIANYYSLRSEHEKAVMYF------------------KRALKLNPKYLSAWTL 369 (559)
T ss_pred HHHHHHHHHHHhccCCc------cceeeehhHHHHHHhHHHHHHHH------------------HHHHhcCcchhHHHHH
Confidence 66566677777877666 67777889999999999999999 9999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCCC
Q 002716 610 QSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDS 688 (889)
Q Consensus 610 la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~~~~~ 688 (889)
+|.-|.++.+...|+..|++|++++|.+..+|+.+|+.|.-++-..=|+-+|++|+...|++ ..|..+|.+|...+
T Consensus 370 mGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~--- 446 (559)
T KOG1155|consen 370 MGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLN--- 446 (559)
T ss_pred hhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhc---
Confidence 99999999999999999999999999999999999999999999999999999999999999 89999999999988
Q ss_pred CcchhhhhhHHHHhcchhhhCch----hHHHHHHHHHHHHcCChHHHHHHHHHHHc-------cCcc--hHHHHHHHHHH
Q 002716 689 SCSSTVVSLLEDALKCPSDRLRK----GQALNNLGSVYVDCGQLDLAADCYSNALK-------IRHT--RAHQGLARVHF 755 (889)
Q Consensus 689 ~~~~~~~~~~~~Al~~~~~~~~~----~~~~~~Lg~~y~~~g~~~~A~~~~~~al~-------~~p~--~a~~~La~~~~ 755 (889)
++++|++||..+..- ..++..||.+|.+.++.++|..+|++-++ ..|. .+...||..+.
T Consensus 447 --------~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~ 518 (559)
T KOG1155|consen 447 --------RLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFK 518 (559)
T ss_pred --------cHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Confidence 999999999998332 57899999999999999999999999887 3343 67777999999
Q ss_pred HcCCHHHHHHHHHHHHHHhccCHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002716 756 LKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQL 803 (889)
Q Consensus 756 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~~al~l 803 (889)
..+++++|..+..+++.-.+ ..++|...++...+.
T Consensus 519 k~~~~~~As~Ya~~~~~~~~-------------e~eeak~LlReir~~ 553 (559)
T KOG1155|consen 519 KMKDFDEASYYATLVLKGET-------------ECEEAKALLREIRKI 553 (559)
T ss_pred hhcchHHHHHHHHHHhcCCc-------------hHHHHHHHHHHHHHh
Confidence 99999999888887766533 125666666655443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.5e-21 Score=214.40 Aligned_cols=304 Identities=12% Similarity=0.005 Sum_probs=227.6
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHH
Q 002716 480 YPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLH 558 (889)
Q Consensus 480 ~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l 558 (889)
...+.+|..+...|++++|+..|+++++.+| +..++..+|.++...|++++|+..+++++...+... .....++..+
T Consensus 36 ~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~--~~~~~~~~~L 113 (389)
T PRK11788 36 SRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTR--EQRLLALQEL 113 (389)
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCH--HHHHHHHHHH
Confidence 3556778888899999999999999999998 788888899999999999999999998887432222 1112467778
Q ss_pred HHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcH
Q 002716 559 MLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH 638 (889)
Q Consensus 559 g~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~ 638 (889)
|.++...|++++|..++ .++++.+|.+..++..++.++...|++++|+..++++++..|.+.
T Consensus 114 a~~~~~~g~~~~A~~~~------------------~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 175 (389)
T PRK11788 114 GQDYLKAGLLDRAEELF------------------LQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSL 175 (389)
T ss_pred HHHHHHCCCHHHHHHHH------------------HHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcc
Confidence 88888888888887666 788887888888888888888888888888888888888776543
Q ss_pred -----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhH
Q 002716 639 -----ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQ 713 (889)
Q Consensus 639 -----~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~ 713 (889)
..+..+|.++...|++++|+..|+++++.+|+.. .
T Consensus 176 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----------------------------------------~ 215 (389)
T PRK11788 176 RVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCV----------------------------------------R 215 (389)
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCH----------------------------------------H
Confidence 2455677888888888888888888887666541 2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHccCcc---hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhcCCH
Q 002716 714 ALNNLGSVYVDCGQLDLAADCYSNALKIRHT---RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDR 790 (889)
Q Consensus 714 ~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~---~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 790 (889)
++..+|.++...|++++|+..|++++..+|. .++..++.+|...|++++|...+++
T Consensus 216 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~--------------------- 274 (389)
T PRK11788 216 ASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRR--------------------- 274 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH---------------------
Confidence 4566777777788888888888888877766 4566778888888888555555444
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHH-HHHHHHH-H-cCCHHHHHHHHHHH
Q 002716 791 ELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH-LRAAFHE-H-TGDVLGALRDCRAA 867 (889)
Q Consensus 791 ~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~l~-l~a~~~~-~-~g~~~~A~~~~~~a 867 (889)
+++.+|+.. .+..+|.++.+.|++++|+..++++++..|+...+. +.+.... . .|+..+|+..+++.
T Consensus 275 ---------~~~~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~ 344 (389)
T PRK11788 275 ---------ALEEYPGAD-LLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDL 344 (389)
T ss_pred ---------HHHhCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHH
Confidence 444455543 347889999999999999999999999999986555 3333332 1 35788887777766
Q ss_pred H----ccCCCC
Q 002716 868 L----SVDPND 874 (889)
Q Consensus 868 l----~l~P~~ 874 (889)
+ ..+|++
T Consensus 345 ~~~~~~~~p~~ 355 (389)
T PRK11788 345 VGEQLKRKPRY 355 (389)
T ss_pred HHHHHhCCCCE
Confidence 5 445553
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.3e-21 Score=197.14 Aligned_cols=462 Identities=15% Similarity=0.108 Sum_probs=339.1
Q ss_pred HHHHhhhHHHhcccHHHHHHHHHHHHHcCcchhHhhHHHHHhhcCCcHHHHHHHhhhhhccCcchhHHHHHhhcCChhHH
Q 002716 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKR 464 (889)
Q Consensus 385 a~~~lG~~~~~~g~~~eA~~~~~~al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A 464 (889)
.+++|+.-|-....+.+|+..|+-.+..... +..|+ .-.+.|.+|+....| .+|
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf-~nag~----------------------lkmnigni~~kkr~f---ska 256 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMF-PNAGI----------------------LKMNIGNIHFKKREF---SKA 256 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhccccc-CCCce----------------------eeeeecceeeehhhH---HHH
Confidence 4577888888888899999999877653211 11110 113578888888888 999
Q ss_pred HHHHHHhhhcCCCC-----hhhHHHHHHHHHhccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 002716 465 WEDLDKATALDPTL-----SYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAIL 539 (889)
Q Consensus 465 ~~~~~~al~~dp~~-----~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~al 539 (889)
+..|..|+..-|.- .....+.|..+.+.|+|+.|+..|+.+++..|+..+-+.+..+++..|+-++-.+.|++++
T Consensus 257 ikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli 336 (840)
T KOG2003|consen 257 IKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLI 336 (840)
T ss_pred HHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHh
Confidence 99999999888753 3456677889999999999999999999999988888888999999999999999999998
Q ss_pred HhC--CCCcchh---hh-HHHHHHHHHHHHHhh-----chhHHHHHHHhhhhccc----ccc-cc---hHHHHHHHHhcC
Q 002716 540 TLS--PDYRMFE---GR-VAASQLHMLVREHID-----NWTIADCWLQLYDRWSS----VDD-IG---SLSVIYQMLESD 600 (889)
Q Consensus 540 ~~~--p~~~~~~---~~-~~a~~~lg~~~~~~~-----~~~~A~~~~~l~~~~~~----~dd-~~---sl~~~~~al~~~ 600 (889)
.+- |++..+. .. -..+..-+.-.-.+. +...|.+++-...+.-+ .+- +| .++.+. +-...
T Consensus 337 ~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk-~s~~~ 415 (840)
T KOG2003|consen 337 DIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLK-ASQHA 415 (840)
T ss_pred cCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHH-Hhhhh
Confidence 641 1111000 00 000111111111112 22233333310000000 000 00 011111 11111
Q ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHhc--CCHHHHHHHHHHHHhcCCCh-HHHHH
Q 002716 601 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD-HERLVYEGWILYDT--SHCEEGLRKAEESIQMKRSF-EAFFL 676 (889)
Q Consensus 601 p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-~~~~~~lg~~~~~~--g~~~eA~~~~~~al~~~p~~-~a~~~ 676 (889)
|-...+-.+.+..+++.|+++.|++.+.-.-+.+... ..+-.++..+++.+ .++..|..+...++.++.-+ .+..+
T Consensus 416 ~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~n 495 (840)
T KOG2003|consen 416 ELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTN 495 (840)
T ss_pred hhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhc
Confidence 2222334566778899999999999887655444332 33455666666654 36788899999999888877 77788
Q ss_pred HHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCch----hHHHHHHHHHHHHcCChHHHHHHHHHHHccC--cchHHHHH
Q 002716 677 KAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK----GQALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGL 750 (889)
Q Consensus 677 la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~----~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~--p~~a~~~L 750 (889)
.|.+-...| .+++|.+.|..+++. .++++++|..+..+|+.++|+++|-+.-.+- ..+.+..+
T Consensus 496 kgn~~f~ng-----------d~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qi 564 (840)
T KOG2003|consen 496 KGNIAFANG-----------DLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQI 564 (840)
T ss_pred CCceeeecC-----------cHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 888777777 899999999988665 7889999999999999999999998765443 33888899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHh-c---CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHH
Q 002716 751 ARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSE-Y---CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENE 826 (889)
Q Consensus 751 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~---~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~e 826 (889)
+.+|....+..+|++++.++...-|+++.+...++. | |+..+|.+++-.....-|.+.+...+||..|....-.++
T Consensus 565 aniye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ek 644 (840)
T KOG2003|consen 565 ANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEK 644 (840)
T ss_pred HHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHH
Confidence 999999999999999999999999999999888888 4 788889998888888999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHhh
Q 002716 827 AIAELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRV 884 (889)
Q Consensus 827 A~~~l~kal~~~p~~~~l~-l~a~~~~~~g~~~~A~~~~~~al~l~P~~~~~l~l~~~~ 884 (889)
|+.+|+++--+.|+..-|. +.+.|+.+.|+|++|...|+..-...|.+.+-+..+.|+
T Consensus 645 ai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri 703 (840)
T KOG2003|consen 645 AINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRI 703 (840)
T ss_pred HHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 9999999999999986665 678888888999999999999999999999999887775
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.7e-18 Score=182.53 Aligned_cols=477 Identities=14% Similarity=0.056 Sum_probs=381.3
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHcCcch--hHhhHHHHHhhcCCcHHHHHHHhh
Q 002716 363 DKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIY--SIAGLARLGYIKGHKLWAYEKLNS 440 (889)
Q Consensus 363 ~~~v~~l~~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~~~~al~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~ 440 (889)
+.+..+|+++++|.+.+.+.-.|+. +..-|+.|.+.+++|-+.-+.. .+..-|++--.+|+.+..-+.+..
T Consensus 393 ~darilL~rAveccp~s~dLwlAla-------rLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~r 465 (913)
T KOG0495|consen 393 EDARILLERAVECCPQSMDLWLALA-------RLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDR 465 (913)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHH-------HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3477899999999998866433333 4567999999999997754433 344556666778888887777777
Q ss_pred hhhccCcchhHHH-----HHhhcCChhHHHHH----HHHhhhc---CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcC
Q 002716 441 VISSVTPLGWMYQ-----ERSLYCEGDKRWED----LDKATAL---DPTLSYPYMYRASSLMTKQNVEAALAEINRILGF 508 (889)
Q Consensus 441 ~~~~~~~~g~~~~-----~~~~~~~~~~A~~~----~~~al~~---dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~ 508 (889)
.+......|.... ....-|+...+... ....+.+ +.+.-..|..-+..+...+-++-|+..|..+++.
T Consensus 466 gl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv 545 (913)
T KOG0495|consen 466 GLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV 545 (913)
T ss_pred HHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh
Confidence 7766665553221 11111211122111 2223322 3345567888899999999999999999999999
Q ss_pred CCC-HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhccccccc
Q 002716 509 KLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 587 (889)
Q Consensus 509 ~p~-~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~ 587 (889)
.|. ...+...+.+--..|..++-..++++++...|... ..+.+.+..+...|+...|...+
T Consensus 546 fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae------~lwlM~ake~w~agdv~~ar~il------------ 607 (913)
T KOG0495|consen 546 FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAE------ILWLMYAKEKWKAGDVPAARVIL------------ 607 (913)
T ss_pred ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcch------hHHHHHHHHHHhcCCcHHHHHHH------------
Confidence 994 44444444555567899999999999999999888 67777788888889999996555
Q ss_pred chHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002716 588 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (889)
Q Consensus 588 ~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 667 (889)
.++++.+|++..+|+.--.+.....+++.|...|.++....|. ..+|+.-+.....+++.++|++.++++++.
T Consensus 608 ------~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~ 680 (913)
T KOG0495|consen 608 ------DQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKS 680 (913)
T ss_pred ------HHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999998886 778888889999999999999999999999
Q ss_pred CCCh-HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCch----hHHHHHHHHHHHHcCChHHHHHHHHHHHccC
Q 002716 668 KRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK----GQALNNLGSVYVDCGQLDLAADCYSNALKIR 742 (889)
Q Consensus 668 ~p~~-~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~----~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~ 742 (889)
.|++ ..|..+|.++.+.+ .++.|...|..+++. ...|..|+.+-...|+...|...++++.-.+
T Consensus 681 fp~f~Kl~lmlGQi~e~~~-----------~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN 749 (913)
T KOG0495|consen 681 FPDFHKLWLMLGQIEEQME-----------NIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN 749 (913)
T ss_pred CCchHHHHHHHhHHHHHHH-----------HHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC
Confidence 9999 99999999999998 999999999998554 7789999999999999999999999999999
Q ss_pred cc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Q 002716 743 HT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMD 820 (889)
Q Consensus 743 p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~ 820 (889)
|. ..|....+.-.+.|+.+.|...+.++++..|+++.++.....+.-...-......|++....++.++...|..+..
T Consensus 750 Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~ 829 (913)
T KOG0495|consen 750 PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWS 829 (913)
T ss_pred CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHH
Confidence 99 5666666778889999999999999999999999888777665111111334455666667888999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHH
Q 002716 821 SHKENEAIAELSRAIAFKADL-HLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHS 882 (889)
Q Consensus 821 ~g~~~eA~~~l~kal~~~p~~-~~l~l~a~~~~~~g~~~~A~~~~~~al~l~P~~~~~l~l~~ 882 (889)
..++++|.+.|+++++..|+. +.+.....++.+.|.-+.-.+.+.+...-+|.+.+..-..+
T Consensus 830 e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avS 892 (913)
T KOG0495|consen 830 EKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHh
Confidence 999999999999999999997 44445666677779999999999999999999987654433
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-20 Score=212.39 Aligned_cols=263 Identities=13% Similarity=0.026 Sum_probs=226.9
Q ss_pred chhHHHHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-C----HHHHHHHHHHH
Q 002716 448 LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-A----LECLELRFCFF 522 (889)
Q Consensus 448 ~g~~~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~----~~~l~~~a~~~ 522 (889)
.|..+...+.+ ++|+..|.++++.+|+++.++..+|.++...|++++|+..+++++...+ . ...+..+|.+|
T Consensus 41 ~g~~~~~~~~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~ 117 (389)
T PRK11788 41 KGLNFLLNEQP---DKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDY 117 (389)
T ss_pred HHHHHHhcCCh---HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 34455555666 8999999999999999999999999999999999999999999988644 2 35678889999
Q ss_pred HhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCC
Q 002716 523 LALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP 602 (889)
Q Consensus 523 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~ 602 (889)
...|++++|+..|+++++.+|.+. .++..++.++...|++++|...+ .++++..|.
T Consensus 118 ~~~g~~~~A~~~~~~~l~~~~~~~------~~~~~la~~~~~~g~~~~A~~~~------------------~~~~~~~~~ 173 (389)
T PRK11788 118 LKAGLLDRAEELFLQLVDEGDFAE------GALQQLLEIYQQEKDWQKAIDVA------------------ERLEKLGGD 173 (389)
T ss_pred HHCCCHHHHHHHHHHHHcCCcchH------HHHHHHHHHHHHhchHHHHHHHH------------------HHHHHhcCC
Confidence 999999999999999999988877 78889999999999999997777 888887776
Q ss_pred Ch-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHH
Q 002716 603 KG-----VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLK 677 (889)
Q Consensus 603 ~~-----~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~l 677 (889)
+. ..+..+|.++...|++++|+..|+++++..|+...+++.+|.++...|++++|++.+++++..+|++.
T Consensus 174 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~----- 248 (389)
T PRK11788 174 SLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL----- 248 (389)
T ss_pred cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH-----
Confidence 53 35678899999999999999999999999999999999999999999999999999999997766541
Q ss_pred HHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc-hHHHHHHHHHHH
Q 002716 678 AYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-RAHQGLARVHFL 756 (889)
Q Consensus 678 a~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~-~a~~~La~~~~~ 756 (889)
..++..++.+|...|++++|+..++++++..|+ ..+..++.++..
T Consensus 249 ----------------------------------~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~ 294 (389)
T PRK11788 249 ----------------------------------SEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEE 294 (389)
T ss_pred ----------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 035667788899999999999999999999988 556889999999
Q ss_pred cCCHHHHHHHHHHHHHHhcc
Q 002716 757 KNNKTTAYEEMTKLIKKARN 776 (889)
Q Consensus 757 ~g~~~~A~~~~~~al~~~~~ 776 (889)
.|++++|...++++++..|+
T Consensus 295 ~g~~~~A~~~l~~~l~~~P~ 314 (389)
T PRK11788 295 QEGPEAAQALLREQLRRHPS 314 (389)
T ss_pred hCCHHHHHHHHHHHHHhCcC
Confidence 99997777666666665553
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-19 Score=187.84 Aligned_cols=368 Identities=13% Similarity=-0.004 Sum_probs=242.8
Q ss_pred HHHHHhhcCCcHHHHHHHhhhhhccCcchhHHHHHhhcCChhHHHHHHHHhhhcCC--CChhhHHHHHHHHHhccCHHHH
Q 002716 421 LARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDP--TLSYPYMYRASSLMTKQNVEAA 498 (889)
Q Consensus 421 la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~al~~dp--~~~~a~~~la~~~~~~g~~~~A 498 (889)
.+.++-..|....|++.+..++..++-.-.++.+.+.. -..+......+.--| .+...-+.++.++....+.+++
T Consensus 170 ~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~l---it~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~ 246 (559)
T KOG1155|consen 170 YGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSEL---ITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEA 246 (559)
T ss_pred HHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHh---hchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 45556666777777777777776666555556666555 333333333333333 3333445567777777778888
Q ss_pred HHHHHHHHcC-CC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHH
Q 002716 499 LAEINRILGF-KL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQ 576 (889)
Q Consensus 499 l~~l~kal~~-~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~ 576 (889)
+.-+....+. -| +.-.-...|.+.+.+.|+++|+..|+.+.+.+|-.. .-..+...+.+-.++-.+- .++
T Consensus 247 ~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl------~dmdlySN~LYv~~~~skL-s~L- 318 (559)
T KOG1155|consen 247 LQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRL------DDMDLYSNVLYVKNDKSKL-SYL- 318 (559)
T ss_pred HHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcc------hhHHHHhHHHHHHhhhHHH-HHH-
Confidence 8777777666 45 555566677788888888888888888888777655 2333333433333332221 111
Q ss_pred hhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHH
Q 002716 577 LYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEE 656 (889)
Q Consensus 577 l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~e 656 (889)
.+.+..++.-.++...-+|+.|...++.++|+.+|++|++++|....+|..+|.-|..+.+...
T Consensus 319 ----------------A~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~A 382 (559)
T KOG1155|consen 319 ----------------AQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHA 382 (559)
T ss_pred ----------------HHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHH
Confidence 1556667777777777788888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHH
Q 002716 657 GLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCY 735 (889)
Q Consensus 657 A~~~~~~al~~~p~~-~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~ 735 (889)
|++.|++|++++|.+ . +|+.||..|.-++...=|+-+|
T Consensus 383 Ai~sYRrAvdi~p~DyR-----------------------------------------AWYGLGQaYeim~Mh~YaLyYf 421 (559)
T KOG1155|consen 383 AIESYRRAVDINPRDYR-----------------------------------------AWYGLGQAYEIMKMHFYALYYF 421 (559)
T ss_pred HHHHHHHHHhcCchhHH-----------------------------------------HHhhhhHHHHHhcchHHHHHHH
Confidence 888888888888776 4 4444555555555666677777
Q ss_pred HHHHccCcc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChHHHHH
Q 002716 736 SNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRY 813 (889)
Q Consensus 736 ~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~ 813 (889)
++|....|. +.|..||.+|.+.++.++|++.|. .|+.....+..++..
T Consensus 422 qkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCyk------------------------------rai~~~dte~~~l~~ 471 (559)
T KOG1155|consen 422 QKALELKPNDSRLWVALGECYEKLNRLEEAIKCYK------------------------------RAILLGDTEGSALVR 471 (559)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHH------------------------------HHHhccccchHHHHH
Confidence 777777776 677777777777777744444444 444444445667777
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhcC-------CCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHhhh
Q 002716 814 RAAVLMDSHKENEAIAELSRAIAFK-------ADL-HLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVY 885 (889)
Q Consensus 814 la~~~~~~g~~~eA~~~l~kal~~~-------p~~-~~l~l~a~~~~~~g~~~~A~~~~~~al~l~P~~~~~l~l~~~~~ 885 (889)
+|.+|.+.++..+|..+|++-++.. |.. ....-++..+...+++++|-.+...++.-++.-.+.-.++..++
T Consensus 472 LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~LlReir 551 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKALLREIR 551 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 8888888888888888888777632 221 12224566666678888888878887777666666555555544
Q ss_pred c
Q 002716 886 S 886 (889)
Q Consensus 886 ~ 886 (889)
.
T Consensus 552 ~ 552 (559)
T KOG1155|consen 552 K 552 (559)
T ss_pred H
Confidence 3
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-18 Score=207.70 Aligned_cols=402 Identities=12% Similarity=-0.046 Sum_probs=307.3
Q ss_pred HHHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHH
Q 002716 452 YQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQA 530 (889)
Q Consensus 452 ~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~ 530 (889)
....+.+ +.|+..|+++++.+|+++.+...++.++...|+.++|+..+++++...| ....+...|.++..+|++++
T Consensus 44 ~~r~Gd~---~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 44 RARAGDT---APVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHhCCCH---HHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3344555 7889999999999999965544888899999999999999999994434 55555555889999999999
Q ss_pred HHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHH
Q 002716 531 ALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQ 610 (889)
Q Consensus 531 A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~l 610 (889)
|+..|+++++.+|+++ .++..++..+...++.++|+..+ +++...+|.+... ..+
T Consensus 121 Aiely~kaL~~dP~n~------~~l~gLa~~y~~~~q~~eAl~~l------------------~~l~~~dp~~~~~-l~l 175 (822)
T PRK14574 121 ALALWQSSLKKDPTNP------DLISGMIMTQADAGRGGVVLKQA------------------TELAERDPTVQNY-MTL 175 (822)
T ss_pred HHHHHHHHHhhCCCCH------HHHHHHHHHHhhcCCHHHHHHHH------------------HHhcccCcchHHH-HHH
Confidence 9999999999999998 77888889999999999996666 9999999986554 556
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHH--HHHHHHHcCCC
Q 002716 611 SLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFL--KAYALADSSQD 687 (889)
Q Consensus 611 a~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~--la~~~~~~~~~ 687 (889)
+.++...++..+|+..++++++..|++.+++..+..++...|-...|.+...+--...... ..+.. .+.-....+..
T Consensus 176 ayL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~ 255 (822)
T PRK14574 176 SYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVL 255 (822)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhccc
Confidence 6666667788779999999999999999999999999999999999987766533221111 11111 11111211211
Q ss_pred C-CcchhhhhhHHHHhcchhhhCc-----h------hHHHHHHHHHHHHcCChHHHHHHHHHHHccC---cchHHHHHHH
Q 002716 688 S-SCSSTVVSLLEDALKCPSDRLR-----K------GQALNNLGSVYVDCGQLDLAADCYSNALKIR---HTRAHQGLAR 752 (889)
Q Consensus 688 ~-~~~~~~~~~~~~Al~~~~~~~~-----~------~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~---p~~a~~~La~ 752 (889)
+ .+.......++.|+..+...+. + ..+....-.++...|++.++++.|+...... |..+....|.
T Consensus 256 ~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ad 335 (822)
T PRK14574 256 PTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAAS 335 (822)
T ss_pred ccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Confidence 1 1111222244555554444321 1 2334455566778999999999999888554 5588889999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhcc----------CHHHHHHHHhcCCHHHHHHHHHHHHhcCC---------------CC
Q 002716 753 VHFLKNNKTTAYEEMTKLIKKARN----------NASAYEKRSEYCDRELTRADLEMVTQLDP---------------LR 807 (889)
Q Consensus 753 ~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~~~~A~~~l~~al~l~p---------------~~ 807 (889)
.|...++.++|...|.+++...++ ...+++...+-+++++|...+.+..+..| +.
T Consensus 336 ayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~ 415 (822)
T PRK14574 336 AYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDW 415 (822)
T ss_pred HHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccH
Confidence 999999999999999999886631 12345555555899999999999987544 23
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHH
Q 002716 808 VYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLH-LLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELH 881 (889)
Q Consensus 808 ~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~-~l~l~a~~~~~~g~~~~A~~~~~~al~l~P~~~~~l~l~ 881 (889)
..+...++.++...|++.+|.+.+++.+...|.+. +...+|.++...|.+.+|.+.+++++.++|++..+.-..
T Consensus 416 ~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~ 490 (822)
T PRK14574 416 IEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQ 490 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHH
Confidence 45677789999999999999999999999999974 445889999999999999999999999999987765443
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-22 Score=229.39 Aligned_cols=146 Identities=15% Similarity=0.134 Sum_probs=131.6
Q ss_pred CCCCccccEEEEeCCeEEEehHHHHhhcChhhhhhhcCCCCCCCcCceEecCCCCCHHHHHHHHHhhccCCCCCCCHHHH
Q 002716 176 SGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLL 255 (889)
Q Consensus 176 ~~~~~~~Dv~~~v~~~~~~~hr~vLaa~s~~F~~mf~~~~~e~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~ 255 (889)
.-++.+|||++++|+ +|+|||+|||++||||++||+++|+|+.+ +|++...++++++|+.+|+|+|||++. ++.++|
T Consensus 17 ~~~~~~~~~~~~~~~-~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~-it~~nV 93 (480)
T PHA02790 17 SMTKKFKTIIEAIGG-NIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVY-IDSHNV 93 (480)
T ss_pred HhhhhhceEEEEcCc-EEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEE-EecccH
Confidence 457889999988766 79999999999999999999999999965 566531159999999999999999999 999999
Q ss_pred HHHHHHHHHHcHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCChhhHHHHHHHHhhhcccccCh--HHHH
Q 002716 256 LEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLND--ERVV 325 (889)
Q Consensus 256 ~~ll~~A~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~~l~~~c~~~~~~~l~~~l~~--~~~~ 325 (889)
++||.+|++|.++.+++.|...|...+ +++||+.++.+|..|++..|.+.+.+|+.+|+...... ++|.
T Consensus 94 ~~ll~aA~~Lqi~~v~~~C~~fL~~~l-~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~ef~ 164 (480)
T PHA02790 94 VNLLRASILTSVEFIIYTCINFILRDF-RKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNFD 164 (480)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHhhC-CcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchhhh
Confidence 999999999999999999999999998 89999999999999999999999999999999776543 4444
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.3e-18 Score=176.53 Aligned_cols=283 Identities=14% Similarity=0.062 Sum_probs=254.3
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-H
Q 002716 594 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-E 672 (889)
Q Consensus 594 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~ 672 (889)
-.-...-|.+......+|.++...|++++|+..|+++.-.+|......-..|.++...|+++.-...-...+.++... .
T Consensus 222 le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~ 301 (564)
T KOG1174|consen 222 LHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTAS 301 (564)
T ss_pred HHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchh
Confidence 455566799999999999999999999999999999999999999999999999999999999888888888777555 6
Q ss_pred HHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCc----hhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--hH
Q 002716 673 AFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLR----KGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RA 746 (889)
Q Consensus 673 a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~----~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a 746 (889)
-|+--+..+.... +++.|+..-++.++ ...++..-|..+...|+.++|+-.|+.|..+.|. +.
T Consensus 302 ~wfV~~~~l~~~K-----------~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~ 370 (564)
T KOG1174|consen 302 HWFVHAQLLYDEK-----------KFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEI 370 (564)
T ss_pred hhhhhhhhhhhhh-----------hHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHH
Confidence 6777777777766 78888877777633 3789999999999999999999999999999988 89
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHh-c-----CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Q 002716 747 HQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSE-Y-----CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMD 820 (889)
Q Consensus 747 ~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~-----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~ 820 (889)
|.+|-.+|...|.+.+|......++...|+++......|. . --.++|.+.+++++.+.|....+...+|.++..
T Consensus 371 Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~ 450 (564)
T KOG1174|consen 371 YRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQV 450 (564)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999988877763 2 356899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHhhhcC
Q 002716 821 SHKENEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVYSH 887 (889)
Q Consensus 821 ~g~~~eA~~~l~kal~~~p~~~~l~l~a~~~~~~g~~~~A~~~~~~al~l~P~~~~~l~l~~~~~~~ 887 (889)
.|++++++..+++.+...||...-..+|.+....+.+++|+..|..||.+||++...++.+.++.+.
T Consensus 451 Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~ 517 (564)
T KOG1174|consen 451 EGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKS 517 (564)
T ss_pred hCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhc
Confidence 9999999999999999999986666889999999999999999999999999999999998887653
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.1e-22 Score=228.62 Aligned_cols=145 Identities=12% Similarity=0.255 Sum_probs=132.2
Q ss_pred cCCCCccccEEEEeC-CeEEEehHHHHhhcChhhhhhhcCCCCCCC-cCceEecCCCCCHHHHHHHHHhhccCCCCCCCH
Q 002716 175 MSGDQVLRNVVFRIH-EEKIECDRQKFAALSAPFSAMLNGSFMESL-CEDIDLSENNISPSGLRIISDFSVTGSLNGVTP 252 (889)
Q Consensus 175 ~~~~~~~~Dv~~~v~-~~~~~~hr~vLaa~s~~F~~mf~~~~~e~~-~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~ 252 (889)
+..++.+|||+|+|+ |++|+|||.|||++|+||++||+++|+|+. +.+|+|+ ++++++|+.+|+|+|||+ +++
T Consensus 19 lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~--~v~~~~~~~ll~y~Yt~~---i~~ 93 (557)
T PHA02713 19 LLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQ--MFDKDAVKNIVQYLYNRH---ISS 93 (557)
T ss_pred HHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEec--cCCHHHHHHHHHHhcCCC---CCH
Confidence 357889999999997 899999999999999999999999999875 7899999 599999999999999996 578
Q ss_pred HHHHHHHHHHHHHcHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCChhhHHHHHHHHhhhcccccChHHHH
Q 002716 253 NLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVV 325 (889)
Q Consensus 253 ~~~~~ll~~A~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~~l~~~c~~~~~~~l~~~l~~~~~~ 325 (889)
++|++||.+|++|.++.|++.|...|...+ +.+||+.++..+..+.+..|...|.+++.+|+......++|.
T Consensus 94 ~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l-~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~~~ef~ 165 (557)
T PHA02713 94 MNVIDVLKCADYLLIDDLVTDCESYIKDYT-NHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLITTDAFK 165 (557)
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHhhC-CccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhCChhhh
Confidence 999999999999999999999999999988 889999999888888888899999999999987665555544
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-18 Score=185.76 Aligned_cols=415 Identities=15% Similarity=0.079 Sum_probs=321.0
Q ss_pred HHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHH
Q 002716 454 ERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALC 533 (889)
Q Consensus 454 ~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g~~~~A~~ 533 (889)
.+..| +-|+..-+++..+. +++.--+.+|.+++-.++++.|...++.-.-...+..+.++.+.++.+..++++|..
T Consensus 28 ~q~~y---~~a~f~adkV~~l~-~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~ 103 (611)
T KOG1173|consen 28 MQHRY---KTALFWADKVAGLT-NDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALL 103 (611)
T ss_pred HHHhh---hHHHHHHHHHHhcc-CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455 66666667766655 556666789999999999999988887763333388899999999999999999998
Q ss_pred HHHHH------HHhCCCC---------cc----hhhhHHHHHHHHHHHHHhhchhHHHHHHHh-----------hhhccc
Q 002716 534 DVQAI------LTLSPDY---------RM----FEGRVAASQLHMLVREHIDNWTIADCWLQL-----------YDRWSS 583 (889)
Q Consensus 534 ~~~~a------l~~~p~~---------~~----~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l-----------~~~~~~ 583 (889)
.+... +..+|.+ .+ ........++.|.+|....+.++|..++.. ++++.+
T Consensus 104 vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs 183 (611)
T KOG1173|consen 104 VLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVS 183 (611)
T ss_pred HhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 88722 1122222 11 122223456678888888888888777642 111100
Q ss_pred c------------c----------ccchHHHHHHHH----------hcC--------CCChHHHHHHHHHHHHhCCHHHH
Q 002716 584 V------------D----------DIGSLSVIYQML----------ESD--------APKGVLYFRQSLLLLRLNCPEAA 623 (889)
Q Consensus 584 ~------------d----------d~~sl~~~~~al----------~~~--------p~~~~~~~~la~~~~~~g~~~~A 623 (889)
. + +..-+..+-+.. ... .++..+....+..+...+++.+.
T Consensus 184 ~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c 263 (611)
T KOG1173|consen 184 AHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKEC 263 (611)
T ss_pred HHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHH
Confidence 0 0 000011111111 001 23456677788888889999999
Q ss_pred HHHHHHHHHcCCCcHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCCCCcchhhhhhHHHH
Q 002716 624 MRSLQLARQHAASDHERL-VYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDA 701 (889)
Q Consensus 624 ~~~l~~al~~~p~~~~~~-~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~~~~~~~~~~~~~~~~~A 701 (889)
.+..+..++.+|-+...+ ..+| +++..|+..+-...-.+..+..|+. -.|+..|.-|.-.+ .+.+|
T Consensus 264 ~kit~~lle~dpfh~~~~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~-----------k~seA 331 (611)
T KOG1173|consen 264 LKITEELLEKDPFHLPCLPLHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIG-----------KYSEA 331 (611)
T ss_pred HHHhHHHHhhCCCCcchHHHHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhc-----------CcHHH
Confidence 999999999998766655 4455 8888888888888888888889998 88999998888888 99999
Q ss_pred hcchhhh--Cch--hHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Q 002716 702 LKCPSDR--LRK--GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKAR 775 (889)
Q Consensus 702 l~~~~~~--~~~--~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~ 775 (889)
.+++.++ +.+ +.+|...|..+...|.-++|+.+|..|-+..|. .....+|.-|...++++-|.+.|..++.+.|
T Consensus 332 Rry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P 411 (611)
T KOG1173|consen 332 RRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAP 411 (611)
T ss_pred HHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 9999998 444 889999999999999999999999999999988 7788899999999999999999999999999
Q ss_pred cCHHHHHHHHh--c--CCHHHHHHHHHHHHhc----CCC---ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHH
Q 002716 776 NNASAYEKRSE--Y--CDRELTRADLEMVTQL----DPL---RVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLL 844 (889)
Q Consensus 776 ~~~~~~~~~~~--~--~~~~~A~~~l~~al~l----~p~---~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~l 844 (889)
+++......|. | +.+.+|...|+.++.. .+. -...+.++|.++.+.+++++|+..+++++...|.+...
T Consensus 412 ~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~ 491 (611)
T KOG1173|consen 412 SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDAST 491 (611)
T ss_pred CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhH
Confidence 99998888887 2 7899999999999843 222 23458899999999999999999999999999998666
Q ss_pred H-HHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHhh
Q 002716 845 H-LRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRV 884 (889)
Q Consensus 845 ~-l~a~~~~~~g~~~~A~~~~~~al~l~P~~~~~l~l~~~~ 884 (889)
+ ..|.+|..+|+++.|+..|.++|.++|+|.-+-++++.+
T Consensus 492 ~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 492 HASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 6 789999999999999999999999999998887777664
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.86 E-value=7e-19 Score=189.01 Aligned_cols=272 Identities=15% Similarity=0.086 Sum_probs=176.9
Q ss_pred ChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHH
Q 002716 478 LSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQ 556 (889)
Q Consensus 478 ~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ 556 (889)
++.....++..++..++|.+-.+..+..+..+| +..++-..-.++...|+..+-...-.+++..+|+.+ ..|+
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a------~sW~ 316 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKA------LSWF 316 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCC------cchh
Confidence 334445555555566666666666666666665 555554444455555555555555555555555555 4555
Q ss_pred HHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC
Q 002716 557 LHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS 636 (889)
Q Consensus 557 ~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 636 (889)
.+|..|...|++++|.++| .++..++|..+.+|...|..+...|..++|+..|..|-+.-|.
T Consensus 317 aVg~YYl~i~k~seARry~------------------SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G 378 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYF------------------SKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG 378 (611)
T ss_pred hHHHHHHHhcCcHHHHHHH------------------HHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC
Confidence 5555555556666665555 5555566666666666666666666666666666666555555
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHH
Q 002716 637 DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALN 716 (889)
Q Consensus 637 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~ 716 (889)
.......+|.-|..+++++-|.+.|.+|+.+.|++ +.+++
T Consensus 379 ~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~D----------------------------------------plv~~ 418 (611)
T KOG1173|consen 379 CHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSD----------------------------------------PLVLH 418 (611)
T ss_pred CcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc----------------------------------------chhhh
Confidence 55555555555555566666666666655555554 24667
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHccCcc---------hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhc
Q 002716 717 NLGSVYVDCGQLDLAADCYSNALKIRHT---------RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEY 787 (889)
Q Consensus 717 ~Lg~~y~~~g~~~~A~~~~~~al~~~p~---------~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 787 (889)
.+|.+.+..+.|.+|..+|++++..-++ ..+.+||.++.+.+.+
T Consensus 419 Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~--------------------------- 471 (611)
T KOG1173|consen 419 ELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY--------------------------- 471 (611)
T ss_pred hhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH---------------------------
Confidence 7788888888888888888888733222 4577788888888888
Q ss_pred CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHH
Q 002716 788 CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHL 843 (889)
Q Consensus 788 ~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~ 843 (889)
++|+..+++++.+.|.++.++-.+|.+|...|+++.|+..|.+++.++|++..
T Consensus 472 ---~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~ 524 (611)
T KOG1173|consen 472 ---EEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIF 524 (611)
T ss_pred ---HHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHH
Confidence 66666666677777788888888888888899999999999999998888733
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.6e-19 Score=178.05 Aligned_cols=329 Identities=14% Similarity=0.114 Sum_probs=263.7
Q ss_pred CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHH
Q 002716 475 DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVA 553 (889)
Q Consensus 475 dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 553 (889)
+|.++.-++.+|..++..|++..|+..|..+++.+| +..+++.+|.+|+.+|.-.-|+.++.++|++-|+.. .
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~------~ 107 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFM------A 107 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHH------H
Confidence 456677788999999999999999999999999999 999999999999999999999999999999999998 7
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHH---H------------HHHHHHHHHhC
Q 002716 554 ASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL---Y------------FRQSLLLLRLN 618 (889)
Q Consensus 554 a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~---~------------~~la~~~~~~g 618 (889)
+....|.+..++|++++|..-| .+.+..+|.+... . ......+...|
T Consensus 108 ARiQRg~vllK~Gele~A~~DF------------------~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~G 169 (504)
T KOG0624|consen 108 ARIQRGVVLLKQGELEQAEADF------------------DQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSG 169 (504)
T ss_pred HHHHhchhhhhcccHHHHHHHH------------------HHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCC
Confidence 8899999999999999995555 8888888855432 1 12233445578
Q ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhhhH
Q 002716 619 CPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLL 698 (889)
Q Consensus 619 ~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~ 698 (889)
+...|+.+....++..|-++..+...+.+|...|+...|+..++.+-++..++.
T Consensus 170 D~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnT-------------------------- 223 (504)
T KOG0624|consen 170 DCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNT-------------------------- 223 (504)
T ss_pred chhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccch--------------------------
Confidence 888888888888888888888888888888888888888888888776665551
Q ss_pred HHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc
Q 002716 699 EDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARN 776 (889)
Q Consensus 699 ~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~ 776 (889)
+.++.+..+++..|+.+.++...+..++++|+ ..+. .|-...+..+.+..++++++.
T Consensus 224 --------------e~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~----~YKklkKv~K~les~e~~ie~--- 282 (504)
T KOG0624|consen 224 --------------EGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFP----FYKKLKKVVKSLESAEQAIEE--- 282 (504)
T ss_pred --------------HHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHH----HHHHHHHHHHHHHHHHHHHhh---
Confidence 34555666666777888888888888888887 1111 122223333334444444332
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChH----HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHH
Q 002716 777 NASAYEKRSEYCDRELTRADLEMVTQLDPLRVY----PYRYRAAVLMDSHKENEAIAELSRAIAFKADL-HLLHLRAAFH 851 (889)
Q Consensus 777 ~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~----~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~-~~l~l~a~~~ 851 (889)
+++.+++...+++++.+|..+. .+..+..++...+++.+|+....+++.+.|++ ..+.-++..|
T Consensus 283 -----------~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~ 351 (504)
T KOG0624|consen 283 -----------KHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAY 351 (504)
T ss_pred -----------hhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 4457888888888888887443 34556778999999999999999999999996 6677899999
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCHHHHHHHHhhh
Q 002716 852 EHTGDVLGALRDCRAALSVDPNDQEMLELHSRVY 885 (889)
Q Consensus 852 ~~~g~~~~A~~~~~~al~l~P~~~~~l~l~~~~~ 885 (889)
....+|+.|+.+|++|++.+|+|..+-+.+.+++
T Consensus 352 l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Ak 385 (504)
T KOG0624|consen 352 LGDEMYDDAIHDYEKALELNESNTRAREGLERAK 385 (504)
T ss_pred hhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 8889999999999999999999999888777654
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-20 Score=221.43 Aligned_cols=141 Identities=16% Similarity=0.244 Sum_probs=130.4
Q ss_pred CCCccccEEEEe--CCeEEEehHHHHhhcChhhhhhhcCCCCCCCcCceEecCCCCCHHHHHHHHHhhccCCCCCCCHHH
Q 002716 177 GDQVLRNVVFRI--HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (889)
Q Consensus 177 ~~~~~~Dv~~~v--~~~~~~~hr~vLaa~s~~F~~mf~~~~~e~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~ 254 (889)
.++.+|||+|+| +|++|+|||.||+++|+||++||+++|+ +.+|+|+ + ++++|+.+|+|+|||++. ++.++
T Consensus 5 ~~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~--~-~~~~~~~~l~y~Ytg~~~-i~~~~ 77 (534)
T PHA03098 5 ELQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLN--I-DYDSFNEVIKYIYTGKIN-ITSNN 77 (534)
T ss_pred ccCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEec--C-CHHHHHHHHHHhcCCceE-EcHHH
Confidence 478899999998 9999999999999999999999999997 6789999 5 999999999999999999 99999
Q ss_pred HHHHHHHHHHHcHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCChhhHHHHHHHHhhhcccccChHHHH
Q 002716 255 LLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVV 325 (889)
Q Consensus 255 ~~~ll~~A~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~~l~~~c~~~~~~~l~~~l~~~~~~ 325 (889)
+.+||.+|++|.++.|+..|...|...+ +.+|++.++.+|..+++..|...|.+++..|+......+.|.
T Consensus 78 ~~~ll~~A~~l~~~~l~~~C~~~l~~~l-~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~ 147 (534)
T PHA03098 78 VKDILSIANYLIIDFLINLCINYIIKII-DDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFI 147 (534)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhC-CHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhh
Confidence 9999999999999999999999999988 889999999999999999999999999999986554443433
|
|
| >KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-21 Score=199.55 Aligned_cols=150 Identities=22% Similarity=0.306 Sum_probs=137.9
Q ss_pred CCCCccccEEEEeCCeEEEehHHHHhhcChhhhhhhcCCCCCCCcCceEecCCCCCHHHHHHHHHhhccCCCCC--CCHH
Q 002716 176 SGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNG--VTPN 253 (889)
Q Consensus 176 ~~~~~~~Dv~~~v~~~~~~~hr~vLaa~s~~F~~mf~~~~~e~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~--~~~~ 253 (889)
.-+.+.+||+|+|++++|+|||+|||+||.|||+|++|||.|+.+..|.|++ ...++|+.+|.|||||++.. +..+
T Consensus 39 ~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~--t~~eAF~~lLrYiYtg~~~l~~~~ed 116 (620)
T KOG4350|consen 39 FTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQE--TNSEAFRALLRYIYTGKIDLAGVEED 116 (620)
T ss_pred hhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhccccccc--ccHHHHHHHHHHHhhcceecccchHH
Confidence 3467789999999999999999999999999999999999999999999995 77999999999999999872 3578
Q ss_pred HHHHHHHHHHHHcHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCChhhHHHHHHHHhhhcccccChHHHHHHh
Q 002716 254 LLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVEIF 328 (889)
Q Consensus 254 ~~~~ll~~A~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~~l~~~c~~~~~~~l~~~l~~~~~~~ll 328 (889)
.+++.|.+|++|....|..+++.+|+..+ ..+|++.+++.|..|+.+.|...|+.|..+|....|..+.|..+-
T Consensus 117 ~lld~LslAh~Ygf~~Le~aiSeYl~~iL-~~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA~~lL~~~sFn~LS 190 (620)
T KOG4350|consen 117 ILLDYLSLAHRYGFIQLETAISEYLKEIL-KNENVCMIFDAAYLYQLTDLTDYCMMFMDRNADQLLEDPSFNRLS 190 (620)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHH-cccceeeeeeHHHHhcchHHHHHHHHHHhcCHHhhhcCcchhhhh
Confidence 89999999999999999999999999988 789999999999999999999999999999988877777776553
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.9e-21 Score=219.98 Aligned_cols=148 Identities=21% Similarity=0.332 Sum_probs=137.3
Q ss_pred ccCCCCccccEEEEeCCeEEEehHHHHhhcChhhhhhhcCCCCCCCcCceEecCCCCCHHHHHHHHHhhccCCCCCCCHH
Q 002716 174 SMSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN 253 (889)
Q Consensus 174 ~~~~~~~~~Dv~~~v~~~~~~~hr~vLaa~s~~F~~mf~~~~~e~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~ 253 (889)
.+...+.+|||++.+++++|+|||.||||+||||++||+++|+|+.+.+|+|.+ |++.+|..+++|+|||++. ++.+
T Consensus 29 ~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~--v~~~~l~~ll~y~Yt~~i~-i~~~ 105 (571)
T KOG4441|consen 29 ELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEG--VDPETLELLLDYAYTGKLE-ISED 105 (571)
T ss_pred HHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEec--CCHHHHHHHHHHhhcceEE-echH
Confidence 346899999999999999999999999999999999999999999999999995 9999999999999999999 9999
Q ss_pred HHHHHHHHHHHHcHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCChhhHHHHHHHHhhhcccccChHHHH
Q 002716 254 LLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVV 325 (889)
Q Consensus 254 ~~~~ll~~A~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~~l~~~c~~~~~~~l~~~l~~~~~~ 325 (889)
+|++||.+|+.|.+..+.+.|...|...+ +++|++.+..+|..+++..|....-.++.+|+......++|+
T Consensus 106 nVq~ll~aA~~lQi~~v~~~C~~fL~~~l-~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~~~eefl 176 (571)
T KOG4441|consen 106 NVQELLEAASLLQIPEVVDACCEFLESQL-DPSNCLGIRRFAELHSCTELLEVADEYILQHFAEVSKTEEFL 176 (571)
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccHHhh
Confidence 99999999999999999999999999988 899999999999999999999999988888876655444444
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.7e-18 Score=183.14 Aligned_cols=442 Identities=15% Similarity=0.074 Sum_probs=303.2
Q ss_pred HHhhhHHHhcccHHHHHHHHHHHHHcCcchhHhhHHHHHhhcCCcHHHHHHHhhhhhccCcchhHHHHHhhcCChhHHHH
Q 002716 387 HQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWE 466 (889)
Q Consensus 387 ~~lG~~~~~~g~~~eA~~~~~~al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~ 466 (889)
-.-|+..+..|+|+.|+.+|..|+.+++. .++ .+.+....|...+.| .+|+.
T Consensus 6 k~kgnaa~s~~d~~~ai~~~t~ai~l~p~-nhv------------------------lySnrsaa~a~~~~~---~~al~ 57 (539)
T KOG0548|consen 6 KEKGNAAFSSGDFETAIRLFTEAIMLSPT-NHV------------------------LYSNRSAAYASLGSY---EKALK 57 (539)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHccCCC-ccc------------------------hhcchHHHHHHHhhH---HHHHH
Confidence 35688899999999999999999987654 211 112334456667778 99999
Q ss_pred HHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcc-------------------
Q 002716 467 DLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALE------------------- 526 (889)
Q Consensus 467 ~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g------------------- 526 (889)
+-.+.++++|+.+.+|..+|..+...|+|++|+..|.+.|..+| +...+..++..+....
T Consensus 58 da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p 137 (539)
T KOG0548|consen 58 DATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLP 137 (539)
T ss_pred HHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcCh
Confidence 99999999999999999999999999999999999999999999 7777777777762210
Q ss_pred --cHHHHHHHHHHHHH---hCCCCcchhhhHH-HHHHHHHHHHHhhchhHHHHHH-H---hhhhcccccccchHHHHHHH
Q 002716 527 --DYQAALCDVQAILT---LSPDYRMFEGRVA-ASQLHMLVREHIDNWTIADCWL-Q---LYDRWSSVDDIGSLSVIYQM 596 (889)
Q Consensus 527 --~~~~A~~~~~~al~---~~p~~~~~~~~~~-a~~~lg~~~~~~~~~~~A~~~~-~---l~~~~~~~dd~~sl~~~~~a 596 (889)
++-..-..|...+. .+|.+...+.... ....+|.+....-....+.... . .......++.-.-+.+-.+-
T Consensus 138 ~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee 217 (539)
T KOG0548|consen 138 LTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEE 217 (539)
T ss_pred hhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHH
Confidence 01111123333333 3333332221100 0000111100000000000000 0 00000000000001111110
Q ss_pred HhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHH
Q 002716 597 LESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFF 675 (889)
Q Consensus 597 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~ 675 (889)
. .........-.+|.......++..|++.|..++.++ .+...+.+.+.+|+..|.+.+.+.....+++..... .-+.
T Consensus 218 ~-~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~k 295 (539)
T KOG0548|consen 218 R-RVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYK 295 (539)
T ss_pred H-HHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHH
Confidence 0 012233456789999999999999999999999999 888899999999999999999999999998877776 4455
Q ss_pred HHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--hHHHHHHHH
Q 002716 676 LKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARV 753 (889)
Q Consensus 676 ~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~ 753 (889)
+++..+...|... .....++.++..|.+.+.. +.-+.+.-.....+++....+...-++|. ..-..-|..
T Consensus 296 lIak~~~r~g~a~----~k~~~~~~ai~~~~kaLte----~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne 367 (539)
T KOG0548|consen 296 LIAKALARLGNAY----TKREDYEGAIKYYQKALTE----HRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNE 367 (539)
T ss_pred HHHHHHHHhhhhh----hhHHhHHHHHHHHHHHhhh----hcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHH
Confidence 5666666654222 2225788888888876433 12255666777888888888888888888 334445899
Q ss_pred HHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHH
Q 002716 754 HFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEY----CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIA 829 (889)
Q Consensus 754 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~ 829 (889)
++..|+|..|+..|+++|..+|+++.+|.+++.. +.+..|+.+.+.+++++|+...+|..-|.++..+.+|++|++
T Consensus 368 ~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAle 447 (539)
T KOG0548|consen 368 AFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALE 447 (539)
T ss_pred HHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998883 899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHH
Q 002716 830 ELSRAIAFKADLH-LLHLRAAFHEHTGDVLGALRDCRA 866 (889)
Q Consensus 830 ~l~kal~~~p~~~-~l~l~a~~~~~~g~~~~A~~~~~~ 866 (889)
.|.++++.+|+.. .......++..+.......+.+++
T Consensus 448 ay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 448 AYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 9999999999873 333444444432222333344444
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-17 Score=199.39 Aligned_cols=439 Identities=11% Similarity=-0.043 Sum_probs=341.9
Q ss_pred HHHhhhHHHhcccHHHHHHHHHHHHHcCc----chhHhhHHHHHhhcCCcHHHHHHHhhhhhccC--------cchhHHH
Q 002716 386 FHQLGCVRLLRKEYDEAEHLFEAAVNAGH----IYSIAGLARLGYIKGHKLWAYEKLNSVISSVT--------PLGWMYQ 453 (889)
Q Consensus 386 ~~~lG~~~~~~g~~~eA~~~~~~al~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--------~~g~~~~ 453 (889)
|..+-..+...|++++|.+.|+.....+. ......+..++...++...+.+.+..+...-. .+..+|.
T Consensus 90 ~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~ 169 (697)
T PLN03081 90 LCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHV 169 (697)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHh
Confidence 33444556678888999998888765432 12344455666667777777666655543211 1223444
Q ss_pred HHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHhcccHHHH
Q 002716 454 ERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL--ALECLELRFCFFLALEDYQAA 531 (889)
Q Consensus 454 ~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p--~~~~l~~~a~~~~~~g~~~~A 531 (889)
..+.+ ++|...|++..+ | +...|..+...|.+.|++++|+..|+++++..+ +...+..+...+...|+.+.+
T Consensus 170 k~g~~---~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 170 KCGML---IDARRLFDEMPE--R-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred cCCCH---HHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 44555 888888888754 3 566788999999999999999999999876544 666777777778888999999
Q ss_pred HHHHHHHHHhCCC-CcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHH
Q 002716 532 LCDVQAILTLSPD-YRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQ 610 (889)
Q Consensus 532 ~~~~~~al~~~p~-~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~l 610 (889)
...+..+++..-. +. .++..+...|.+.|++++|.+.| +++ .+.+...|..+
T Consensus 244 ~~l~~~~~~~g~~~d~------~~~n~Li~~y~k~g~~~~A~~vf------------------~~m---~~~~~vt~n~l 296 (697)
T PLN03081 244 QQLHCCVLKTGVVGDT------FVSCALIDMYSKCGDIEDARCVF------------------DGM---PEKTTVAWNSM 296 (697)
T ss_pred HHHHHHHHHhCCCccc------eeHHHHHHHHHHCCCHHHHHHHH------------------HhC---CCCChhHHHHH
Confidence 9988887765421 22 36777889999999999997777 544 34577889999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHcCCC
Q 002716 611 SLLLLRLNCPEAAMRSLQLARQHA-ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK--RSFEAFFLKAYALADSSQD 687 (889)
Q Consensus 611 a~~~~~~g~~~~A~~~l~~al~~~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--p~~~a~~~la~~~~~~~~~ 687 (889)
...|.+.|++++|+..|++..+.. .-+...+..+...+.+.|++++|.+.+..+++.. |+...+..+...|...|
T Consensus 297 i~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G-- 374 (697)
T PLN03081 297 LAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWG-- 374 (697)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCC--
Confidence 999999999999999999987653 2246788889999999999999999999998875 33377888999999999
Q ss_pred CCcchhhhhhHHHHhcchhhhCch-hHHHHHHHHHHHHcCChHHHHHHHHHHHcc--Ccc-hHHHHHHHHHHHcCCHHHH
Q 002716 688 SSCSSTVVSLLEDALKCPSDRLRK-GQALNNLGSVYVDCGQLDLAADCYSNALKI--RHT-RAHQGLARVHFLKNNKTTA 763 (889)
Q Consensus 688 ~~~~~~~~~~~~~Al~~~~~~~~~-~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~--~p~-~a~~~La~~~~~~g~~~~A 763 (889)
.+++|.+.+.....+ ..+|+.+...|...|+.++|++.|++..+. .|+ .++..+...+...|..++|
T Consensus 375 ---------~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a 445 (697)
T PLN03081 375 ---------RMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQG 445 (697)
T ss_pred ---------CHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHH
Confidence 999999999988655 678999999999999999999999998764 466 7888899999999999999
Q ss_pred HHHHHHHHHHhc--cCHHHHH----HHHhcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 002716 764 YEEMTKLIKKAR--NNASAYE----KRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAF 837 (889)
Q Consensus 764 ~~~~~~al~~~~--~~~~~~~----~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~ 837 (889)
.+.++...+... ++...|. ..+..|+.++|.+.+++. ...| +...|..+...+...|+++.|...++++++.
T Consensus 446 ~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~ 523 (697)
T PLN03081 446 WEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGM 523 (697)
T ss_pred HHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC
Confidence 999999987543 3333333 333348999999998765 2334 4567889999999999999999999999999
Q ss_pred CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 002716 838 KADL-HLLHLRAAFHEHTGDVLGALRDCRAALSV 870 (889)
Q Consensus 838 ~p~~-~~l~l~a~~~~~~g~~~~A~~~~~~al~l 870 (889)
.|+. ..+..+..+|...|++++|.+.++...+.
T Consensus 524 ~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 524 GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 9985 45567777888889999999999987754
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-17 Score=206.21 Aligned_cols=446 Identities=13% Similarity=0.011 Sum_probs=308.5
Q ss_pred HhhhHHHhcccHHHHHHHHHHHHHcCcchhHhhHHHHHhhcCCcHHHHHHHhhhhhcc-Ccchh-------HHHHHhhcC
Q 002716 388 QLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSV-TPLGW-------MYQERSLYC 459 (889)
Q Consensus 388 ~lG~~~~~~g~~~eA~~~~~~al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~g~-------~~~~~~~~~ 459 (889)
.|-..|.+.|++++|.+.|++.... ...++..+...+...|+..+|++.+..+.... .+... .+...+..
T Consensus 227 ~Li~~y~k~g~~~~A~~lf~~m~~~-d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~- 304 (857)
T PLN03077 227 ALITMYVKCGDVVSARLVFDRMPRR-DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDE- 304 (857)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCC-CcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh-
Confidence 3445566677777777777665432 23345555666677777777777666654331 11111 11222222
Q ss_pred ChhHHHHHHHHhhhcC-CCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 002716 460 EGDKRWEDLDKATALD-PTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAI 538 (889)
Q Consensus 460 ~~~~A~~~~~~al~~d-p~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~a 538 (889)
+.|.+.+..+.+.. +.+...|..+...|.+.|++++|.+.|++.. .|+...+..+...|.+.|++++|+..|++.
T Consensus 305 --~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~--~~d~~s~n~li~~~~~~g~~~~A~~lf~~M 380 (857)
T PLN03077 305 --RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME--TKDAVSWTAMISGYEKNGLPDKALETYALM 380 (857)
T ss_pred --HHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCeeeHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 55555555554432 2345667777777777777777777777754 245556666677777777777777777776
Q ss_pred HHh--CCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCC-CChHHHHHHHHHHH
Q 002716 539 LTL--SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA-PKGVLYFRQSLLLL 615 (889)
Q Consensus 539 l~~--~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p-~~~~~~~~la~~~~ 615 (889)
... .|+.. .+..+-..+...|++++|.+.+ ..+.+... .+..++..+...|.
T Consensus 381 ~~~g~~Pd~~-------t~~~ll~a~~~~g~~~~a~~l~------------------~~~~~~g~~~~~~~~n~Li~~y~ 435 (857)
T PLN03077 381 EQDNVSPDEI-------TIASVLSACACLGDLDVGVKLH------------------ELAERKGLISYVVVANALIEMYS 435 (857)
T ss_pred HHhCCCCCce-------eHHHHHHHHhccchHHHHHHHH------------------HHHHHhCCCcchHHHHHHHHHHH
Confidence 543 35554 3334445666777777776655 66666543 35667788889999
Q ss_pred HhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHcCCCCCcchhh
Q 002716 616 RLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ-MKRSFEAFFLKAYALADSSQDSSCSSTV 694 (889)
Q Consensus 616 ~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~-~~p~~~a~~~la~~~~~~~~~~~~~~~~ 694 (889)
+.|++++|.+.|++..+ .+...|..+...|...|+.++|+..|++... ..|+..++..+..++...|
T Consensus 436 k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g--------- 503 (857)
T PLN03077 436 KCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIG--------- 503 (857)
T ss_pred HcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhc---------
Confidence 99999999999987643 3456788888889999999999999999875 3455566666666777777
Q ss_pred hhhHHHHhcchhhhCch-----hHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc-hHHHHHHHHHHHcCCHHHHHHHHH
Q 002716 695 VSLLEDALKCPSDRLRK-----GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-RAHQGLARVHFLKNNKTTAYEEMT 768 (889)
Q Consensus 695 ~~~~~~Al~~~~~~~~~-----~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~-~a~~~La~~~~~~g~~~~A~~~~~ 768 (889)
.++.+.+.+....+. ...++.+-..|.+.|++++|...|+.. .++ .+|..+...|...|+.++|++.|+
T Consensus 504 --~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~ 578 (857)
T PLN03077 504 --ALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFN 578 (857)
T ss_pred --hHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHHH
Confidence 667766666555222 456677888999999999999999886 455 788889999999999999999999
Q ss_pred HHHHHhc-cCHHHHHHH----HhcCCHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 002716 769 KLIKKAR-NNASAYEKR----SEYCDRELTRADLEMVTQL---DPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKAD 840 (889)
Q Consensus 769 ~al~~~~-~~~~~~~~~----~~~~~~~~A~~~l~~al~l---~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~ 840 (889)
+..+... ++...|... ..-|+.++|...|+...+. .| +...|..+..++.+.|++++|.+.+++. ...|+
T Consensus 579 ~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd 656 (857)
T PLN03077 579 RMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP-NLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD 656 (857)
T ss_pred HHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC
Confidence 9887532 233333322 2238889999999988743 34 3467888999999999999999999875 57888
Q ss_pred HHHHH-HHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHhh
Q 002716 841 LHLLH-LRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRV 884 (889)
Q Consensus 841 ~~~l~-l~a~~~~~~g~~~~A~~~~~~al~l~P~~~~~l~l~~~~ 884 (889)
...+. ++..+. ..|+.+.|....+++++++|++....-++..+
T Consensus 657 ~~~~~aLl~ac~-~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ 700 (857)
T PLN03077 657 PAVWGALLNACR-IHRHVELGELAAQHIFELDPNSVGYYILLCNL 700 (857)
T ss_pred HHHHHHHHHHHH-HcCChHHHHHHHHHHHhhCCCCcchHHHHHHH
Confidence 76666 455444 44899999999999999999988776665443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.8e-18 Score=175.78 Aligned_cols=407 Identities=14% Similarity=0.089 Sum_probs=306.8
Q ss_pred HHhhhHHHhcccHHHHHHHHHHHHHcCcchhHhhHHHHHhhcCCcHHHHHHHhhhhhccCcchhHHHHHhhcCChhHHHH
Q 002716 387 HQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWE 466 (889)
Q Consensus 387 ~~lG~~~~~~g~~~eA~~~~~~al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~ 466 (889)
.++|++|+++.+|.+|+++|+-|+..- .+... +.- +....+.|..+...+.| +.|+.
T Consensus 241 mnigni~~kkr~fskaikfyrmaldqv--psink-----------~~r-------ikil~nigvtfiq~gqy---~dain 297 (840)
T KOG2003|consen 241 MNIGNIHFKKREFSKAIKFYRMALDQV--PSINK-----------DMR-------IKILNNIGVTFIQAGQY---DDAIN 297 (840)
T ss_pred eeecceeeehhhHHHHHHHHHHHHhhc--cccch-----------hhH-------HHHHhhcCeeEEecccc---hhhHh
Confidence 478999999999999999999998632 22111 111 12234567777778888 99999
Q ss_pred HHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCC----------C--C-HHHHHHHHHH--------HHhc
Q 002716 467 DLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFK----------L--A-LECLELRFCF--------FLAL 525 (889)
Q Consensus 467 ~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~----------p--~-~~~l~~~a~~--------~~~~ 525 (889)
.|+...+..|+...++ ++-.+++..|+-++-.+.|.+.+.+- | + .+.+...+.- -...
T Consensus 298 sfdh~m~~~pn~~a~~-nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~k 376 (840)
T KOG2003|consen 298 SFDHCMEEAPNFIAAL-NLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENK 376 (840)
T ss_pred hHHHHHHhCccHHhhh-hhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhh
Confidence 9999999999887654 67788899999999999999987642 1 1 1222222111 1112
Q ss_pred ccHHHHHHHHHHHHH--hCCCCcchhh--------------hHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccch
Q 002716 526 EDYQAALCDVQAILT--LSPDYRMFEG--------------RVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 589 (889)
Q Consensus 526 g~~~~A~~~~~~al~--~~p~~~~~~~--------------~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~s 589 (889)
.+-++|+..--+++. +.|+...-.. .......-+.-+.+.|+++.|++.++.+++..
T Consensus 377 a~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kd------- 449 (840)
T KOG2003|consen 377 ADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKD------- 449 (840)
T ss_pred hhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhcc-------
Confidence 223333333333332 2333321100 00111122344566777777766663333210
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHh--CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002716 590 LSVIYQMLESDAPKGVLYFRQSLLLLRL--NCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (889)
Q Consensus 590 l~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 667 (889)
+.....+-.++..+++.+ .++..|..+...++..+.-++.++.+.|.+.+..|++++|.+.|++++..
T Consensus 450 ----------nk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n 519 (840)
T KOG2003|consen 450 ----------NKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN 519 (840)
T ss_pred ----------chhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC
Confidence 111223344555555553 37889999999999999999999999999999999999999999999998
Q ss_pred CCCh-HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhh----CchhHHHHHHHHHHHHcCChHHHHHHHHHHHccC
Q 002716 668 KRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR----LRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR 742 (889)
Q Consensus 668 ~p~~-~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~----~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~ 742 (889)
+.+. ++.+++|..+..+| .+++|+.+|-+. ++.++++..++.+|..+.+..+|++++.++..+-
T Consensus 520 dasc~ealfniglt~e~~~-----------~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sli 588 (840)
T KOG2003|consen 520 DASCTEALFNIGLTAEALG-----------NLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLI 588 (840)
T ss_pred chHHHHHHHHhcccHHHhc-----------CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccC
Confidence 8888 99999999999999 999999999886 5568999999999999999999999999999999
Q ss_pred cc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 002716 743 HT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEY----CDRELTRADLEMVTQLDPLRVYPYRYRAA 816 (889)
Q Consensus 743 p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~ 816 (889)
|+ ..+..||.+|-+.|+..+|..++-......|-+......++.| .-.++|+.+|+++.-+.|+........|.
T Consensus 589 p~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmias 668 (840)
T KOG2003|consen 589 PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIAS 668 (840)
T ss_pred CCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHH
Confidence 98 7888899999999999999999999888899877766666664 45789999999999999999999999999
Q ss_pred HHHhCCCHHHHHHHHHHHHhcCCCH-HHHH
Q 002716 817 VLMDSHKENEAIAELSRAIAFKADL-HLLH 845 (889)
Q Consensus 817 ~~~~~g~~~eA~~~l~kal~~~p~~-~~l~ 845 (889)
++.+.|+|.+|...|+..-...|.+ ..+.
T Consensus 669 c~rrsgnyqka~d~yk~~hrkfpedldclk 698 (840)
T KOG2003|consen 669 CFRRSGNYQKAFDLYKDIHRKFPEDLDCLK 698 (840)
T ss_pred HHHhcccHHHHHHHHHHHHHhCccchHHHH
Confidence 9999999999999999998888885 5544
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-16 Score=197.71 Aligned_cols=440 Identities=9% Similarity=-0.064 Sum_probs=350.1
Q ss_pred HHHHhhhHHHhcccHHHHHHHHHHHHHcCcc---hhHhhHHHHHhhcCCcHHHHHHHhhhhhcc--------CcchhHHH
Q 002716 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI---YSIAGLARLGYIKGHKLWAYEKLNSVISSV--------TPLGWMYQ 453 (889)
Q Consensus 385 a~~~lG~~~~~~g~~~eA~~~~~~al~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------~~~g~~~~ 453 (889)
.|..+-..|.+.|++++|++.|++....|.. .....+..++...|+...|.+....++..- ..+-.+|.
T Consensus 255 s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~ 334 (857)
T PLN03077 255 SWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYL 334 (857)
T ss_pred hhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHH
Confidence 4666777888999999999999999876532 234445666777888888887776655431 12334566
Q ss_pred HHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhcccHHHH
Q 002716 454 ERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILG--FKLALECLELRFCFFLALEDYQAA 531 (889)
Q Consensus 454 ~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~--~~p~~~~l~~~a~~~~~~g~~~~A 531 (889)
+.+.+ ++|...|++..+ .+...|..+...|.+.|++++|+..|+++.. ..|+...+...-..+...|++++|
T Consensus 335 k~g~~---~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a 408 (857)
T PLN03077 335 SLGSW---GEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVG 408 (857)
T ss_pred hcCCH---HHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHH
Confidence 66666 899999988653 3567899999999999999999999998754 456666676666788899999999
Q ss_pred HHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHH
Q 002716 532 LCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQS 611 (889)
Q Consensus 532 ~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la 611 (889)
.+.+..+++...... ..++..+...|.+.|++++|.+.| +++.+ .+...|..+.
T Consensus 409 ~~l~~~~~~~g~~~~-----~~~~n~Li~~y~k~g~~~~A~~vf------------------~~m~~---~d~vs~~~mi 462 (857)
T PLN03077 409 VKLHELAERKGLISY-----VVVANALIEMYSKCKCIDKALEVF------------------HNIPE---KDVISWTSII 462 (857)
T ss_pred HHHHHHHHHhCCCcc-----hHHHHHHHHHHHHcCCHHHHHHHH------------------HhCCC---CCeeeHHHHH
Confidence 999999988754322 147778889999999999997777 55433 3566788899
Q ss_pred HHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHcCCCCC
Q 002716 612 LLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS--FEAFFLKAYALADSSQDSS 689 (889)
Q Consensus 612 ~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~--~~a~~~la~~~~~~~~~~~ 689 (889)
..|...|+.++|+..|++.....+.+...+..+-..+...|+.+.+.+.+..+++.... ......+...|...|
T Consensus 463 ~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G---- 538 (857)
T PLN03077 463 AGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCG---- 538 (857)
T ss_pred HHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcC----
Confidence 99999999999999999998765556677777777888999999999999998876433 355667778888889
Q ss_pred cchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHcc--Ccc-hHHHHHHHHHHHcCCHHHHHHH
Q 002716 690 CSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI--RHT-RAHQGLARVHFLKNNKTTAYEE 766 (889)
Q Consensus 690 ~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~--~p~-~a~~~La~~~~~~g~~~~A~~~ 766 (889)
.+++|.+.+........+|+.+...|...|+.++|++.|++..+. .|+ .++..+-..+...|+.++|..+
T Consensus 539 -------~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~ 611 (857)
T PLN03077 539 -------RMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEY 611 (857)
T ss_pred -------CHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHH
Confidence 999999999888444789999999999999999999999998874 466 6777788889999999999999
Q ss_pred HHHHHHHhc--cCHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 002716 767 MTKLIKKAR--NNASAYEKRSE----YCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKAD 840 (889)
Q Consensus 767 ~~~al~~~~--~~~~~~~~~~~----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~ 840 (889)
++...+..+ ++...|..+.. -|+.++|...+++. ...|+ ...|..+-..+...|+.+.|....++++++.|+
T Consensus 612 f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~ 689 (857)
T PLN03077 612 FHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPN 689 (857)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Confidence 999986543 34445544443 38999999999876 35554 667888878888899999999999999999999
Q ss_pred H-HHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 002716 841 L-HLLHLRAAFHEHTGDVLGALRDCRAALS 869 (889)
Q Consensus 841 ~-~~l~l~a~~~~~~g~~~~A~~~~~~al~ 869 (889)
. ..+.+++.+|...|++++|.+..+...+
T Consensus 690 ~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 690 SVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred CcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 7 4445888899999999999999887754
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.4e-17 Score=186.08 Aligned_cols=82 Identities=15% Similarity=0.102 Sum_probs=50.9
Q ss_pred CCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHH
Q 002716 788 CDRELTRADLEMVTQLDPL-RVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL-HLLHLRAAFHEHTGDVLGALRDCR 865 (889)
Q Consensus 788 ~~~~~A~~~l~~al~l~p~-~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~-~~l~l~a~~~~~~g~~~~A~~~~~ 865 (889)
|++.+|+..|..++...+. +...|+.+|.+|+..|.+++|+..|++++...|+. .....++.++.++|+.++|.+.++
T Consensus 428 ~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~ 507 (895)
T KOG2076|consen 428 GKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLE 507 (895)
T ss_pred ccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHh
Confidence 4455555555555554442 34566667777777777777777777777777765 333356666666677777776666
Q ss_pred HHHc
Q 002716 866 AALS 869 (889)
Q Consensus 866 ~al~ 869 (889)
....
T Consensus 508 ~~~~ 511 (895)
T KOG2076|consen 508 QIIN 511 (895)
T ss_pred cccC
Confidence 6553
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-16 Score=180.02 Aligned_cols=353 Identities=13% Similarity=0.035 Sum_probs=248.3
Q ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHH
Q 002716 481 PYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHM 559 (889)
Q Consensus 481 a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg 559 (889)
..+..|..++..|++++|...+..++..+| ++.+++.+|.+|..+|+.++|....-.+-.++|++. .-|..++
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~------e~W~~la 214 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY------ELWKRLA 214 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh------HHHHHHH
Confidence 455667777777888888888888888888 777777888888888888888877777777788777 6677777
Q ss_pred HHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcH-
Q 002716 560 LVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH- 638 (889)
Q Consensus 560 ~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~- 638 (889)
....++|++++|.-+| .++++.+|.+....++.+.+|.+.|+...|+..|.+++...|...
T Consensus 215 dls~~~~~i~qA~~cy------------------~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~ 276 (895)
T KOG2076|consen 215 DLSEQLGNINQARYCY------------------SRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDI 276 (895)
T ss_pred HHHHhcccHHHHHHHH------------------HHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhH
Confidence 7777888888886666 788888888877777888888888888888888888887777211
Q ss_pred ----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh---HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCc-
Q 002716 639 ----ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF---EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLR- 710 (889)
Q Consensus 639 ----~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~- 710 (889)
......+..+...++.+.|++.++.++....+- +.+..++.++.... .++.++.......+
T Consensus 277 er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~-----------q~d~~~~~i~~~~~r 345 (895)
T KOG2076|consen 277 ERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNK-----------QSDKALMKIVDDRNR 345 (895)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhH-----------HHHHhhHHHHHHhcc
Confidence 122333555666677777777777777632221 33444444443333 22222222211100
Q ss_pred -------------------------------hhH-HHHHHHHHHHHcCChHHHHHHHHHHHccCcc---hHHHHHHHHHH
Q 002716 711 -------------------------------KGQ-ALNNLGSVYVDCGQLDLAADCYSNALKIRHT---RAHQGLARVHF 755 (889)
Q Consensus 711 -------------------------------~~~-~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~---~a~~~La~~~~ 755 (889)
... ....++.+..+.++..+++..+..--...|. ..+..++.++.
T Consensus 346 ~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~ 425 (895)
T KOG2076|consen 346 ESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALT 425 (895)
T ss_pred ccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHH
Confidence 022 2555666666666667776666544443344 88899999999
Q ss_pred HcCCHHHHHHHHHHHHHHhc-cCHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHH
Q 002716 756 LKNNKTTAYEEMTKLIKKAR-NNASAYEKRSEY----CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAE 830 (889)
Q Consensus 756 ~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~ 830 (889)
..|++++|+.++..+....+ +++.+|...+.+ +.+++|+..|++++.++|++..+...|+.++.+.|+.++|.+.
T Consensus 426 ~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEt 505 (895)
T KOG2076|consen 426 NIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALET 505 (895)
T ss_pred hcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHH
Confidence 99999999999999988777 455666666663 8889999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002716 831 LSRAIAFKAD----------LHLLHLRAAFHEHTGDVLGALRDCRAAL 868 (889)
Q Consensus 831 l~kal~~~p~----------~~~l~l~a~~~~~~g~~~~A~~~~~~al 868 (889)
++..+.-++. --....+..++.+.|+.++=+..-...+
T Consensus 506 L~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 506 LEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLV 553 (895)
T ss_pred HhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 9987632211 1223356677788899888544444333
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.4e-15 Score=163.45 Aligned_cols=437 Identities=15% Similarity=0.072 Sum_probs=273.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHcCcch--hHhhHHHHHhhcCCcHHHHHHHhhhh
Q 002716 365 TVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIY--SIAGLARLGYIKGHKLWAYEKLNSVI 442 (889)
Q Consensus 365 ~v~~l~~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~~~~al~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~~~ 442 (889)
....++++++.-|++.. +. ..-....+.++|+..+.+|++.-+.. -+..+|+
T Consensus 365 K~RVlRKALe~iP~sv~----LW---KaAVelE~~~darilL~rAveccp~s~dLwlAlar------------------- 418 (913)
T KOG0495|consen 365 KKRVLRKALEHIPRSVR----LW---KAAVELEEPEDARILLERAVECCPQSMDLWLALAR------------------- 418 (913)
T ss_pred HHHHHHHHHHhCCchHH----HH---HHHHhccChHHHHHHHHHHHHhccchHHHHHHHHH-------------------
Confidence 34677888887777643 22 23334456667999999998854332 2222232
Q ss_pred hccCcchhHHHHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcC---CC---CHHH--
Q 002716 443 SSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGF---KL---ALEC-- 514 (889)
Q Consensus 443 ~~~~~~g~~~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~---~p---~~~~-- 514 (889)
..-| ..|...++++-+.-|++...|..-+.+--..|+.+.-.+.+.+.+.. +. +.+.
T Consensus 419 ------------LetY---enAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl 483 (913)
T KOG0495|consen 419 ------------LETY---ENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWL 483 (913)
T ss_pred ------------HHHH---HHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHH
Confidence 2233 55555566666666666666666666666666655555555544321 11 2333
Q ss_pred -----------------------------------HHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHH
Q 002716 515 -----------------------------------LELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHM 559 (889)
Q Consensus 515 -----------------------------------l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg 559 (889)
+..-+..+.+.+-++-|...|..+|+.+|... ..|...+
T Consensus 484 ~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~------slWlra~ 557 (913)
T KOG0495|consen 484 KEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKK------SLWLRAA 557 (913)
T ss_pred HHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchh------HHHHHHH
Confidence 33334445555556666666666666666665 3333333
Q ss_pred HHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHH
Q 002716 560 LVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE 639 (889)
Q Consensus 560 ~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~ 639 (889)
..-...|..++-. +.+++++...|.....|...+..+...|+..+|...+.++++.+|++.+
T Consensus 558 ~~ek~hgt~Esl~------------------Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnsee 619 (913)
T KOG0495|consen 558 MFEKSHGTRESLE------------------ALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEE 619 (913)
T ss_pred HHHHhcCcHHHHH------------------HHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHH
Confidence 3333344444332 2336777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCch----hHHH
Q 002716 640 RLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK----GQAL 715 (889)
Q Consensus 640 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~----~~~~ 715 (889)
+|+.--.+.....+++.|...|.++....|....|+--+.....++ ..++|++.++.+++. ...|
T Consensus 620 iwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld-----------~~eeA~rllEe~lk~fp~f~Kl~ 688 (913)
T KOG0495|consen 620 IWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLD-----------NVEEALRLLEEALKSFPDFHKLW 688 (913)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhh-----------hHHHHHHHHHHHHHhCCchHHHH
Confidence 7776666677777777777777777766666665665555555555 555555555554332 4566
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHccCcc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhc----CC
Q 002716 716 NNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEY----CD 789 (889)
Q Consensus 716 ~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~----~~ 789 (889)
..+|.++.++++.+.|...|...++.-|. ..|..|+.+-...|+.-.|...++++.-.+|.+..+|.....+ |+
T Consensus 689 lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn 768 (913)
T KOG0495|consen 689 LMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGN 768 (913)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCC
Confidence 77777777777777777777777777776 6667777777777777777777777777777776666655442 67
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 002716 790 RELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALS 869 (889)
Q Consensus 790 ~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~l~l~a~~~~~~g~~~~A~~~~~~al~ 869 (889)
.++|.....+|++--|+....|..--...-.-++-..++..+++. ..|+.++...+..+....++++|.++|.++++
T Consensus 769 ~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkc---e~dphVllaia~lfw~e~k~~kar~Wf~Ravk 845 (913)
T KOG0495|consen 769 KEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC---EHDPHVLLAIAKLFWSEKKIEKAREWFERAVK 845 (913)
T ss_pred HHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhc---cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 777777777777777776666554444444444444555544442 34445566566666666899999999999999
Q ss_pred cCCCCHHHHHH
Q 002716 870 VDPNDQEMLEL 880 (889)
Q Consensus 870 l~P~~~~~l~l 880 (889)
.+|++.++.-.
T Consensus 846 ~d~d~GD~wa~ 856 (913)
T KOG0495|consen 846 KDPDNGDAWAW 856 (913)
T ss_pred cCCccchHHHH
Confidence 99999887643
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-16 Score=191.15 Aligned_cols=408 Identities=9% Similarity=-0.022 Sum_probs=315.4
Q ss_pred HHHHhhhHHHhcccHHHHHHHHHHHHHcCc---chhHhhHHHHHhhcCCcHHHHHHHhhhhhc----cCcchhHHHHHhh
Q 002716 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAGH---IYSIAGLARLGYIKGHKLWAYEKLNSVISS----VTPLGWMYQERSL 457 (889)
Q Consensus 385 a~~~lG~~~~~~g~~~eA~~~~~~al~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~g~~~~~~~~ 457 (889)
.+..+-..+...++++.|.+.+......|. ......+...|.+.|+.+.|.+.+..+... +..+-..|...+.
T Consensus 125 t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~ 204 (697)
T PLN03081 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGN 204 (697)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcC
Confidence 344555566677888888888887777552 233445667788888888888887776542 1123344555566
Q ss_pred cCChhHHHHHHHHhhhcCC-CChhhHHHHHHHHHhccCHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHhcccHHHHHHH
Q 002716 458 YCEGDKRWEDLDKATALDP-TLSYPYMYRASSLMTKQNVEAALAEINRILGFK--LALECLELRFCFFLALEDYQAALCD 534 (889)
Q Consensus 458 ~~~~~~A~~~~~~al~~dp-~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~--p~~~~l~~~a~~~~~~g~~~~A~~~ 534 (889)
+ ++|+..|++..+..+ .+..+|..+...+...|..+.+.+....+++.. |+..++..+...|.+.|++++|...
T Consensus 205 ~---~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~v 281 (697)
T PLN03081 205 Y---REAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCV 281 (697)
T ss_pred H---HHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHH
Confidence 6 888888888876543 234566677777888899998888877776543 4777777788899999999999999
Q ss_pred HHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcC-CCChHHHHHHHHH
Q 002716 535 VQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD-APKGVLYFRQSLL 613 (889)
Q Consensus 535 ~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~-p~~~~~~~~la~~ 613 (889)
|++.. +.+. .+|..+...|.+.|++++|...| +++.+.. ..+...+..+...
T Consensus 282 f~~m~---~~~~------vt~n~li~~y~~~g~~~eA~~lf------------------~~M~~~g~~pd~~t~~~ll~a 334 (697)
T PLN03081 282 FDGMP---EKTT------VAWNSMLAGYALHGYSEEALCLY------------------YEMRDSGVSIDQFTFSIMIRI 334 (697)
T ss_pred HHhCC---CCCh------hHHHHHHHHHHhCCCHHHHHHHH------------------HHHHHcCCCCCHHHHHHHHHH
Confidence 98763 2333 57888889999999999997777 7776543 3356678888889
Q ss_pred HHHhCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcch
Q 002716 614 LLRLNCPEAAMRSLQLARQHA-ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSS 692 (889)
Q Consensus 614 ~~~~g~~~~A~~~l~~al~~~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~ 692 (889)
+.+.|++++|.+.+..+++.. +.+..++..+...|.+.|+.++|.+.|++..+ |+..+|..+...|...|
T Consensus 335 ~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~d~~t~n~lI~~y~~~G------- 405 (697)
T PLN03081 335 FSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--KNLISWNALIAGYGNHG------- 405 (697)
T ss_pred HHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--CCeeeHHHHHHHHHHcC-------
Confidence 999999999999999988876 45677888899999999999999999998753 54578888999999998
Q ss_pred hhhhhHHHHhcchhhhC----ch-hHHHHHHHHHHHHcCChHHHHHHHHHHHcc---Ccc-hHHHHHHHHHHHcCCHHHH
Q 002716 693 TVVSLLEDALKCPSDRL----RK-GQALNNLGSVYVDCGQLDLAADCYSNALKI---RHT-RAHQGLARVHFLKNNKTTA 763 (889)
Q Consensus 693 ~~~~~~~~Al~~~~~~~----~~-~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~---~p~-~a~~~La~~~~~~g~~~~A 763 (889)
..++|++.+++.. .+ ..++..+...+...|+.++|..+|+...+. .|+ ..|..+...+.+.|+.++|
T Consensus 406 ----~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 406 ----RGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred ----CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 8888888888762 23 667888889999999999999999998753 465 6788899999999999999
Q ss_pred HHHHHHHHHHhccCHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 002716 764 YEEMTKLIKKARNNASAYEKRSE----YCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAF 837 (889)
Q Consensus 764 ~~~~~~al~~~~~~~~~~~~~~~----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~ 837 (889)
.+.+++.- .. ++...|..+.. .|+.+.|...+++.++++|++...|..++.+|.+.|++++|.+.+++..+.
T Consensus 482 ~~~~~~~~-~~-p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 482 YAMIRRAP-FK-PTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHCC-CC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99887641 12 34444444333 389999999999999999999999999999999999999999999987644
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.8e-17 Score=182.03 Aligned_cols=291 Identities=15% Similarity=0.006 Sum_probs=180.5
Q ss_pred HHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHh
Q 002716 519 FCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE 598 (889)
Q Consensus 519 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~ 598 (889)
|.+.+..|+++.|.+...++.+..|+.. ..+.+.+.++...|+++.|..++ .++.+
T Consensus 91 glla~~~g~~~~A~~~l~~~~~~~~~~~------~~~llaA~aa~~~g~~~~A~~~l------------------~~a~~ 146 (409)
T TIGR00540 91 ALLKLAEGDYAKAEKLIAKNADHAAEPV------LNLIKAAEAAQQRGDEARANQHL------------------EEAAE 146 (409)
T ss_pred HHHHHhCCCHHHHHHHHHHHhhcCCCCH------HHHHHHHHHHHHCCCHHHHHHHH------------------HHHHH
Confidence 4455555555555555555555555444 33444455555555555555555 55555
Q ss_pred cCCCCh-HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHH
Q 002716 599 SDAPKG-VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFL 676 (889)
Q Consensus 599 ~~p~~~-~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~ 676 (889)
..|++. .+....+.++...|++++|...++...+..|+++.++..++.++...|++++|.+.+.+..+..... ..+..
T Consensus 147 ~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~ 226 (409)
T TIGR00540 147 LAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFAD 226 (409)
T ss_pred hCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 555543 2344456666666666666666666666666666666666666666666666666666666543222 10000
Q ss_pred HHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc------hHHHHH
Q 002716 677 KAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT------RAHQGL 750 (889)
Q Consensus 677 la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~------~a~~~L 750 (889)
+- . ..+.-....+..+++.+.+.++.+..|. ..+..+
T Consensus 227 l~-~------------------------------------~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~ 269 (409)
T TIGR00540 227 LE-Q------------------------------------KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIAL 269 (409)
T ss_pred HH-H------------------------------------HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHH
Confidence 00 0 0000001112222233344444443331 455555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhccCHH----HHHHHHhc--CCHHHHHHHHHHHHhcCCCCh--HHHHHHHHHHHhCC
Q 002716 751 ARVHFLKNNKTTAYEEMTKLIKKARNNAS----AYEKRSEY--CDRELTRADLEMVTQLDPLRV--YPYRYRAAVLMDSH 822 (889)
Q Consensus 751 a~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~--~~~~~A~~~l~~al~l~p~~~--~~~~~la~~~~~~g 822 (889)
|..+...|++++|.+.++++++..|++.. .+...... ++.+.+...++++++.+|+++ .....+|+++.+.|
T Consensus 270 a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~ 349 (409)
T TIGR00540 270 AEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHG 349 (409)
T ss_pred HHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcc
Confidence 66666666666666666666666665542 22222222 566788999999999999999 88999999999999
Q ss_pred CHHHHHHHHH--HHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 002716 823 KENEAIAELS--RAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSV 870 (889)
Q Consensus 823 ~~~eA~~~l~--kal~~~p~~~~l~l~a~~~~~~g~~~~A~~~~~~al~l 870 (889)
++++|.++|+ ++++..|++..+..++.++.++|+.++|.+.|++++..
T Consensus 350 ~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 350 EFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred cHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999 68889999877778899999999999999999998764
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-15 Score=185.26 Aligned_cols=338 Identities=12% Similarity=-0.006 Sum_probs=173.3
Q ss_pred HHHhcccHHHHHHHHHHHHHcCcch----hHhhHHHHHhhcCCcHHHHHHHhhhhhccCc------chhHHHHHhhcCCh
Q 002716 392 VRLLRKEYDEAEHLFEAAVNAGHIY----SIAGLARLGYIKGHKLWAYEKLNSVISSVTP------LGWMYQERSLYCEG 461 (889)
Q Consensus 392 ~~~~~g~~~eA~~~~~~al~~~~~~----~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~------~g~~~~~~~~~~~~ 461 (889)
.+.+.|++++|.+.|+.....+... ....+...+...|....|+..+..+.. ++ +-..+...+.+
T Consensus 379 ~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--pd~~Tyn~LL~a~~k~g~~--- 453 (1060)
T PLN03218 379 RLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--PTLSTFNMLMSVCASSQDI--- 453 (1060)
T ss_pred HHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--CCHHHHHHHHHHHHhCcCH---
Confidence 4557899999999999987765321 112233445556666666655543332 11 01112222233
Q ss_pred hHHHHHHHHhhhcCC-CChhhHHHHHHHHHhccCHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 002716 462 DKRWEDLDKATALDP-TLSYPYMYRASSLMTKQNVEAALAEINRILGF--KLALECLELRFCFFLALEDYQAALCDVQAI 538 (889)
Q Consensus 462 ~~A~~~~~~al~~dp-~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~--~p~~~~l~~~a~~~~~~g~~~~A~~~~~~a 538 (889)
++|...+++..+... .+...|..+-..|.+.|+.++|...|+++... .|+...+..+...|.+.|++++|+..|+..
T Consensus 454 e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M 533 (1060)
T PLN03218 454 DGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIM 533 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 555555555544332 23444555555555555555555555555433 235555555555555555555555555555
Q ss_pred HHh--CCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhc----CCCChHHHHHHHH
Q 002716 539 LTL--SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES----DAPKGVLYFRQSL 612 (889)
Q Consensus 539 l~~--~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~----~p~~~~~~~~la~ 612 (889)
... .|+. ..+..+...+.+.|++++|.+.+ .++... .| +...|..+..
T Consensus 534 ~~~Gv~PD~-------vTYnsLI~a~~k~G~~deA~~lf------------------~eM~~~~~gi~P-D~vTynaLI~ 587 (1060)
T PLN03218 534 RSKNVKPDR-------VVFNALISACGQSGAVDRAFDVL------------------AEMKAETHPIDP-DHITVGALMK 587 (1060)
T ss_pred HHcCCCCCH-------HHHHHHHHHHHHCCCHHHHHHHH------------------HHHHHhcCCCCC-cHHHHHHHHH
Confidence 432 2332 24555555555555555554444 444331 22 2344555555
Q ss_pred HHHHhCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHcCCCCC
Q 002716 613 LLLRLNCPEAAMRSLQLARQHA-ASDHERLVYEGWILYDTSHCEEGLRKAEESIQM--KRSFEAFFLKAYALADSSQDSS 689 (889)
Q Consensus 613 ~~~~~g~~~~A~~~l~~al~~~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~p~~~a~~~la~~~~~~~~~~~ 689 (889)
.|.+.|++++|.+.|+...+.+ +.+...|..+...|.+.|++++|+..|++..+. .|+...+..+...+...+
T Consensus 588 ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G---- 663 (1060)
T PLN03218 588 ACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAG---- 663 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC----
Confidence 5555555555555555555543 233445555555555555555555555555543 344444445555555555
Q ss_pred cchhhhhhHHHHhcchhhhCc----h-hHHHHHHHHHHHHcCChHHHHHHHHHHHcc--Ccc-hHHHHHHHHHHHcCCHH
Q 002716 690 CSSTVVSLLEDALKCPSDRLR----K-GQALNNLGSVYVDCGQLDLAADCYSNALKI--RHT-RAHQGLARVHFLKNNKT 761 (889)
Q Consensus 690 ~~~~~~~~~~~Al~~~~~~~~----~-~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~--~p~-~a~~~La~~~~~~g~~~ 761 (889)
.+++|.+.+..... + ..+|+.+...|.+.|++++|...|++..+. .|+ ..|..+...|...|+++
T Consensus 664 -------~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~e 736 (1060)
T PLN03218 664 -------DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLP 736 (1060)
T ss_pred -------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHH
Confidence 45555555444421 1 345555555555555555555555554332 333 44555555555555555
Q ss_pred HHHHHHHHHH
Q 002716 762 TAYEEMTKLI 771 (889)
Q Consensus 762 ~A~~~~~~al 771 (889)
+|++.++++.
T Consensus 737 eAlelf~eM~ 746 (1060)
T PLN03218 737 KALEVLSEMK 746 (1060)
T ss_pred HHHHHHHHHH
Confidence 5555555544
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-15 Score=184.91 Aligned_cols=373 Identities=10% Similarity=-0.025 Sum_probs=290.4
Q ss_pred CchhHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHcCcchhHhhHHHHHhhcCCcHHHHHHHhh
Q 002716 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNS 440 (889)
Q Consensus 361 ~~~~~v~~l~~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~~~~al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 440 (889)
+...+..+++.+.+...-++.. ..+..+-..+...|..++|...|+.... ........+-.++...|+.+.|.+.+..
T Consensus 385 ~l~eAl~Lfd~M~~~gvv~~~~-v~~~~li~~~~~~g~~~eAl~lf~~M~~-pd~~Tyn~LL~a~~k~g~~e~A~~lf~~ 462 (1060)
T PLN03218 385 RIKDCIDLLEDMEKRGLLDMDK-IYHAKFFKACKKQRAVKEAFRFAKLIRN-PTLSTFNMLMSVCASSQDIDGALRVLRL 462 (1060)
T ss_pred CHHHHHHHHHHHHhCCCCCchH-HHHHHHHHHHHHCCCHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 3355666666665433222221 1222334456678899999998877654 2334455566778888999999888877
Q ss_pred hhhccC-c-------chhHHHHHhhcCChhHHHHHHHHhhhcCC-CChhhHHHHHHHHHhccCHHHHHHHHHHHHc--CC
Q 002716 441 VISSVT-P-------LGWMYQERSLYCEGDKRWEDLDKATALDP-TLSYPYMYRASSLMTKQNVEAALAEINRILG--FK 509 (889)
Q Consensus 441 ~~~~~~-~-------~g~~~~~~~~~~~~~~A~~~~~~al~~dp-~~~~a~~~la~~~~~~g~~~~Al~~l~kal~--~~ 509 (889)
+..... + +-.+|...+.. ++|...|++..+... .+...|..+...|.+.|++++|+..|+++.. ..
T Consensus 463 M~~~Gl~pD~~tynsLI~~y~k~G~v---d~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~ 539 (1060)
T PLN03218 463 VQEAGLKADCKLYTTLISTCAKSGKV---DAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK 539 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCcCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC
Confidence 765321 1 22344455555 889999998887653 2678899999999999999999999999865 45
Q ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHh----CCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhccccc
Q 002716 510 LALECLELRFCFFLALEDYQAALCDVQAILTL----SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVD 585 (889)
Q Consensus 510 p~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~d 585 (889)
|+...+..+...|.+.|++++|...+.++... .|+.. .+..+...|.+.|++++|.+.|
T Consensus 540 PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~v-------TynaLI~ay~k~G~ldeA~elf---------- 602 (1060)
T PLN03218 540 PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHI-------TVGALMKACANAGQVDRAKEVY---------- 602 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHH-------HHHHHHHHHHHCCCHHHHHHHH----------
Confidence 68888999999999999999999999998763 45543 6777888899999999997777
Q ss_pred ccchHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002716 586 DIGSLSVIYQMLESD-APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH--AASDHERLVYEGWILYDTSHCEEGLRKAE 662 (889)
Q Consensus 586 d~~sl~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~--~p~~~~~~~~lg~~~~~~g~~~eA~~~~~ 662 (889)
+++.+.+ +.+...|..+...|.+.|++++|+..|++..+. .|+ ...+..+...+.+.|++++|.+.++
T Consensus 603 --------~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 603 --------QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred --------HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 7777766 556788899999999999999999999998876 454 6678888899999999999999999
Q ss_pred HHHhcC--CChHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhh----Cch-hHHHHHHHHHHHHcCChHHHHHHH
Q 002716 663 ESIQMK--RSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR----LRK-GQALNNLGSVYVDCGQLDLAADCY 735 (889)
Q Consensus 663 ~al~~~--p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~----~~~-~~~~~~Lg~~y~~~g~~~~A~~~~ 735 (889)
++.+.. |+...+..+...+...| .+++|.+.+... ..+ ...|+.+...|.+.|++++|.+.|
T Consensus 674 eM~k~G~~pd~~tynsLI~ay~k~G-----------~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf 742 (1060)
T PLN03218 674 DARKQGIKLGTVSYSSLMGACSNAK-----------NWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVL 742 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCC-----------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 998754 55588889999999999 899999998876 223 678999999999999999999999
Q ss_pred HHHHcc--Ccc-hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Q 002716 736 SNALKI--RHT-RAHQGLARVHFLKNNKTTAYEEMTKLIKKAR 775 (889)
Q Consensus 736 ~~al~~--~p~-~a~~~La~~~~~~g~~~~A~~~~~~al~~~~ 775 (889)
++.... .|+ ..+..+...+...|++++|...+.++++...
T Consensus 743 ~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi 785 (1060)
T PLN03218 743 SEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGI 785 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 987754 466 7788888999999999999999999987654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.7e-16 Score=171.76 Aligned_cols=398 Identities=15% Similarity=0.043 Sum_probs=303.2
Q ss_pred HHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCC--C-CHHHHHH-HHHHHHhcccH
Q 002716 453 QERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFK--L-ALECLEL-RFCFFLALEDY 528 (889)
Q Consensus 453 ~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~--p-~~~~l~~-~a~~~~~~g~~ 528 (889)
...+.+ ..+.+.|++++..--.....|+.++..|...|.-..|+..+++.+... | ++..+.. -..++...|.+
T Consensus 334 ~~~g~f---~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~ 410 (799)
T KOG4162|consen 334 SRCGQF---EVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLV 410 (799)
T ss_pred HHHHHH---HHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhh
Confidence 345666 888888999988877888899999999999999999999999999888 5 3444333 34556678999
Q ss_pred HHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhc----hhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCCh
Q 002716 529 QAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDN----WTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG 604 (889)
Q Consensus 529 ~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~----~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~ 604 (889)
++++.+.++++...-... ......++..+|.+|...-. +.+=..+ +..++..++++++.+|.|+
T Consensus 411 eegldYA~kai~~~~~~~-~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~-----------h~kslqale~av~~d~~dp 478 (799)
T KOG4162|consen 411 EEGLDYAQKAISLLGGQR-SHLKPRGYLFLGIAYGFQARQANLKSERDAL-----------HKKSLQALEEAVQFDPTDP 478 (799)
T ss_pred hhHHHHHHHHHHHhhhhh-hhhhhhHHHHHHHHHHhHhhcCCChHHHHHH-----------HHHHHHHHHHHHhcCCCCc
Confidence 999999999998442111 11112577788887754321 1111000 1224666799999999999
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHH
Q 002716 605 VLYFRQSLLLLRLNCPEAAMRSLQLARQH-AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALA 682 (889)
Q Consensus 605 ~~~~~la~~~~~~g~~~~A~~~l~~al~~-~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~ 682 (889)
.+.+.++.-|..+++.+.|+.+.+++++. ..+++.+|..++.++...+++.+|+...+.++.-.|++ ........+-.
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~ 558 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIEL 558 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhh
Confidence 99999999999999999999999999999 45678999999999999999999999999999877775 32222222222
Q ss_pred HcCCCCCcchhhhhhHHHHhcchhhhCc-------------hhHHHHHHHHHHHHcCChHHHHHHHHHHHcc--------
Q 002716 683 DSSQDSSCSSTVVSLLEDALKCPSDRLR-------------KGQALNNLGSVYVDCGQLDLAADCYSNALKI-------- 741 (889)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~Al~~~~~~~~-------------~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~-------- 741 (889)
..+ ..++++......+. .......-+......++..+|.+.+.++...
T Consensus 559 ~~~-----------~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~ 627 (799)
T KOG4162|consen 559 TFN-----------DREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSA 627 (799)
T ss_pred hcc-----------cHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhc
Confidence 222 44444444433311 1111111222233334555555555444321
Q ss_pred -------------Ccc-------hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhc----CCHHHHHHHH
Q 002716 742 -------------RHT-------RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEY----CDRELTRADL 797 (889)
Q Consensus 742 -------------~p~-------~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~----~~~~~A~~~l 797 (889)
.|+ ..|...|.++...++.++|...+.++-...|-..+.|+.+|.. |+..+|...|
T Consensus 628 ~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af 707 (799)
T KOG4162|consen 628 GSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAF 707 (799)
T ss_pred ccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 111 4667788999999999999999999999999999999998873 8999999999
Q ss_pred HHHHhcCCCChHHHHHHHHHHHhCCCHHHHHH--HHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 002716 798 EMVTQLDPLRVYPYRYRAAVLMDSHKENEAIA--ELSRAIAFKADL-HLLHLRAAFHEHTGDVLGALRDCRAALSVDPND 874 (889)
Q Consensus 798 ~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~--~l~kal~~~p~~-~~l~l~a~~~~~~g~~~~A~~~~~~al~l~P~~ 874 (889)
..|+.++|+++.....+|.++.+.|+..-|.. .+..+++++|++ ..|+.+|.++.++||.+.|...|..|+++++.+
T Consensus 708 ~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 708 LVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 99999999999999999999999998888877 999999999996 777789999999999999999999999999988
Q ss_pred HH
Q 002716 875 QE 876 (889)
Q Consensus 875 ~~ 876 (889)
|.
T Consensus 788 PV 789 (799)
T KOG4162|consen 788 PV 789 (799)
T ss_pred Cc
Confidence 74
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.3e-15 Score=167.56 Aligned_cols=405 Identities=13% Similarity=0.029 Sum_probs=298.4
Q ss_pred HHHHHHhhhHHHhcccHHHHHHHHHHHHHc--CcchhHhhHHHHHhhcCCcHHHHHHHhhhhhccCcchhHHHHHhhcCC
Q 002716 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNA--GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCE 460 (889)
Q Consensus 383 ~~a~~~lG~~~~~~g~~~eA~~~~~~al~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~~~ 460 (889)
+..|-.|.......|+|..+.+.|++++.. +....+..++-.+..-|.
T Consensus 323 ~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~------------------------------ 372 (799)
T KOG4162|consen 323 AAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGS------------------------------ 372 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhcc------------------------------
Confidence 345666777777889999999999999753 222222223322222222
Q ss_pred hhHHHHHHHHhhhcC--CCChhhHHHHHHHH-HhccCHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHhc------
Q 002716 461 GDKRWEDLDKATALD--PTLSYPYMYRASSL-MTKQNVEAALAEINRILGFKL------ALECLELRFCFFLAL------ 525 (889)
Q Consensus 461 ~~~A~~~~~~al~~d--p~~~~a~~~la~~~-~~~g~~~~Al~~l~kal~~~p------~~~~l~~~a~~~~~~------ 525 (889)
...|+..+++..... |.++..++.-+.++ -+.|.+++++.+..+++..-. .+.++...|.+|..+
T Consensus 373 ~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~ 452 (799)
T KOG4162|consen 373 DSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANL 452 (799)
T ss_pred chHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCC
Confidence 256777777777776 77788877776655 467889999999999987321 556677777776433
Q ss_pred -----ccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcC
Q 002716 526 -----EDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD 600 (889)
Q Consensus 526 -----g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~ 600 (889)
....++++.++++++.+|+++ .+.+.++.-|...++.+.|.... .++++.+
T Consensus 453 ~seR~~~h~kslqale~av~~d~~dp------~~if~lalq~A~~R~l~sAl~~~------------------~eaL~l~ 508 (799)
T KOG4162|consen 453 KSERDALHKKSLQALEEAVQFDPTDP------LVIFYLALQYAEQRQLTSALDYA------------------REALALN 508 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCc------hHHHHHHHHHHHHHhHHHHHHHH------------------HHHHHhc
Confidence 235678899999999999999 88899999999999999996666 9999984
Q ss_pred -CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHH--
Q 002716 601 -APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFL-- 676 (889)
Q Consensus 601 -p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~-- 676 (889)
..++..|..++.++...+++.+|+...+.++...|+|.........+-...|+.++|+......+.+=... .+...
T Consensus 509 ~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~ 588 (799)
T KOG4162|consen 509 RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLD 588 (799)
T ss_pred CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhh
Confidence 46678899999999999999999999999999999888877777777777899999988877766432211 00000
Q ss_pred HHHHHHH---cCCCCCcchhhhhhHHHHh----------------cchhhhCch-------hHHHHHHHHHHHHcCChHH
Q 002716 677 KAYALAD---SSQDSSCSSTVVSLLEDAL----------------KCPSDRLRK-------GQALNNLGSVYVDCGQLDL 730 (889)
Q Consensus 677 la~~~~~---~~~~~~~~~~~~~~~~~Al----------------~~~~~~~~~-------~~~~~~Lg~~y~~~g~~~~ 730 (889)
.+..... .+....+...+.+....+. ..+.....+ ...|...+..+...++.++
T Consensus 589 ~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~ 668 (799)
T KOG4162|consen 589 EGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDE 668 (799)
T ss_pred hhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchH
Confidence 1111100 0000000001111111111 000000111 3567788899999999999
Q ss_pred HHHHHHHHHccCcc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhc----CCHHHHHH--HHHHHHh
Q 002716 731 AADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEY----CDRELTRA--DLEMVTQ 802 (889)
Q Consensus 731 A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~----~~~~~A~~--~l~~al~ 802 (889)
|..|+.++-.+.|. ..++..|.++..+|++.+|...|..++..+|+........+.. |+..-|.. .+..+++
T Consensus 669 a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr 748 (799)
T KOG4162|consen 669 ARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR 748 (799)
T ss_pred HHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Confidence 99999999999998 8889999999999999999999999999999988887777773 76666666 9999999
Q ss_pred cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCH
Q 002716 803 LDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL 841 (889)
Q Consensus 803 l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~ 841 (889)
+||.+..+|+++|.++.+.|+.++|..+|.-++++.+..
T Consensus 749 ~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 749 LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 999999999999999999999999999999999988764
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.4e-15 Score=169.02 Aligned_cols=243 Identities=13% Similarity=-0.023 Sum_probs=156.4
Q ss_pred HHHHhcCCCChHH-HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-
Q 002716 594 YQMLESDAPKGVL-YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF- 671 (889)
Q Consensus 594 ~~al~~~p~~~~~-~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~- 671 (889)
.++.+.+|++... ....+.++...|++++|...++++.+.+|+++.++..++.+|...|++++|++.+.+..+..+..
T Consensus 142 ~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~ 221 (398)
T PRK10747 142 ERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDE 221 (398)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCH
Confidence 5555555555322 22336666666666666666666666666666666666666666666666666666655443332
Q ss_pred H-HHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--hHHH
Q 002716 672 E-AFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQ 748 (889)
Q Consensus 672 ~-a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~ 748 (889)
+ ....... ++..+........+-+...+.++..-+..|+ .+..
T Consensus 222 ~~~~~l~~~----------------------------------a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~ 267 (398)
T PRK10747 222 EHRAMLEQQ----------------------------------AWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQV 267 (398)
T ss_pred HHHHHHHHH----------------------------------HHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHH
Confidence 1 0000000 1111111111111222222222222222222 5556
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHh--cCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHH
Q 002716 749 GLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSE--YCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENE 826 (889)
Q Consensus 749 ~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~e 826 (889)
.+|..+...|+.++|.+.++++++. +.+.......+. .++.++++..+++.++.+|+++..+..+|.++...|++++
T Consensus 268 ~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~ 346 (398)
T PRK10747 268 AMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQE 346 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 6666777777777777777777663 334433333333 2677888889999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 002716 827 AIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVD 871 (889)
Q Consensus 827 A~~~l~kal~~~p~~~~l~l~a~~~~~~g~~~~A~~~~~~al~l~ 871 (889)
|...|+++++..|+...+..++.++..+|+.++|.+.|++++.+.
T Consensus 347 A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 347 ASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 999999999999999887789999999999999999999998864
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-16 Score=186.02 Aligned_cols=200 Identities=13% Similarity=-0.017 Sum_probs=178.7
Q ss_pred hHHHHHHHHhhhcCCCChhhHHHHHHHHHhc---------cCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHH
Q 002716 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTK---------QNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAA 531 (889)
Q Consensus 462 ~~A~~~~~~al~~dp~~~~a~~~la~~~~~~---------g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A 531 (889)
++|+..|+++++++|+++.+|..+|.++... +++++|+..+++++..+| ++.++..+|.++...|++++|
T Consensus 278 ~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A 357 (553)
T PRK12370 278 QQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVG 357 (553)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH
Confidence 7899999999999999999999999887643 448999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHH
Q 002716 532 LCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQS 611 (889)
Q Consensus 532 ~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la 611 (889)
+..|+++++++|++. .+++.+|.++...|++++|+.++ +++++.+|.++..+..++
T Consensus 358 ~~~~~~Al~l~P~~~------~a~~~lg~~l~~~G~~~eAi~~~------------------~~Al~l~P~~~~~~~~~~ 413 (553)
T PRK12370 358 SLLFKQANLLSPISA------DIKYYYGWNLFMAGQLEEALQTI------------------NECLKLDPTRAAAGITKL 413 (553)
T ss_pred HHHHHHHHHhCCCCH------HHHHHHHHHHHHCCCHHHHHHHH------------------HHHHhcCCCChhhHHHHH
Confidence 999999999999999 89999999999999999997777 999999999988877777
Q ss_pred HHHHHhCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcC
Q 002716 612 LLLLRLNCPEAAMRSLQLARQHA-ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSS 685 (889)
Q Consensus 612 ~~~~~~g~~~~A~~~l~~al~~~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~~ 685 (889)
.++...|++++|+..+++++... |+++.++..+|.++...|++++|...+++.....|+. .+...++..+...+
T Consensus 414 ~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 414 WITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH
Confidence 78888999999999999999875 7889999999999999999999999999988777776 55555555555444
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.5e-16 Score=182.43 Aligned_cols=261 Identities=13% Similarity=-0.016 Sum_probs=197.4
Q ss_pred HHHHHHHHHHh---cccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhh---------chhHHHHHHHhhhhc
Q 002716 514 CLELRFCFFLA---LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHID---------NWTIADCWLQLYDRW 581 (889)
Q Consensus 514 ~l~~~a~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~---------~~~~A~~~~~l~~~~ 581 (889)
.++++|..+.. .+++++|+..|+++++++|++. .++..+|.++...+ ++++|...+
T Consensus 260 ~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a------~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~------ 327 (553)
T PRK12370 260 MVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSI------APYCALAECYLSMAQMGIFDKQNAMIKAKEHA------ 327 (553)
T ss_pred HHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccH------HHHHHHHHHHHHHHHcCCcccchHHHHHHHHH------
Confidence 45666765433 4578899999999999999998 78888888776543 367786666
Q ss_pred ccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 002716 582 SSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKA 661 (889)
Q Consensus 582 ~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~ 661 (889)
+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+
T Consensus 328 ------------~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 328 ------------IKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred ------------HHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHcc
Q 002716 662 EESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI 741 (889)
Q Consensus 662 ~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~ 741 (889)
+++++++|.+. ..+..++.++...|++++|+.++++++..
T Consensus 396 ~~Al~l~P~~~----------------------------------------~~~~~~~~~~~~~g~~eeA~~~~~~~l~~ 435 (553)
T PRK12370 396 NECLKLDPTRA----------------------------------------AAGITKLWITYYHTGIDDAIRLGDELRSQ 435 (553)
T ss_pred HHHHhcCCCCh----------------------------------------hhHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 99999999872 01222333455678999999999999877
Q ss_pred C-cc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 002716 742 R-HT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVL 818 (889)
Q Consensus 742 ~-p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~ 818 (889)
. |+ .++..+|.++...|++++|...+.++. ...|....+...++.+|
T Consensus 436 ~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~------------------------------~~~~~~~~~~~~l~~~~ 485 (553)
T PRK12370 436 HLQDNPILLSMQVMFLSLKGKHELARKLTKEIS------------------------------TQEITGLIAVNLLYAEY 485 (553)
T ss_pred ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhh------------------------------hccchhHHHHHHHHHHH
Confidence 5 44 667889999999999966666655543 34455555666677777
Q ss_pred HhCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 002716 819 MDSHKENEAIAELSRAIAFKADL-HLLHLRAAFHEHTGDVLGALRDCRAALSVD 871 (889)
Q Consensus 819 ~~~g~~~eA~~~l~kal~~~p~~-~~l~l~a~~~~~~g~~~~A~~~~~~al~l~ 871 (889)
...| ++|...+++.++..-.. ........+|.-.|+.+.|..+ +++.+.+
T Consensus 486 ~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 486 CQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 7666 36666666654432221 1112355666666777777666 6665543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.5e-15 Score=154.41 Aligned_cols=387 Identities=13% Similarity=0.008 Sum_probs=257.8
Q ss_pred hhhHHHhcccHHHHHHHHHHHHHcCcc-hhHhhHHHHHhhcCCcHHHHHHHhhhhhccCcchh--HHHHHhhcCChhHHH
Q 002716 389 LGCVRLLRKEYDEAEHLFEAAVNAGHI-YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGW--MYQERSLYCEGDKRW 465 (889)
Q Consensus 389 lG~~~~~~g~~~eA~~~~~~al~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~A~ 465 (889)
.+..|-..|+-+.|+....+...-... .....+++.+..-++...+.-....++..-+ +|. +-...+.--.|.+--
T Consensus 103 ~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp-~aL~~i~~ll~l~v~g~e~~ 181 (564)
T KOG1174|consen 103 AAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECP-MALQVIEALLELGVNGNEIN 181 (564)
T ss_pred HHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcc-hHHHHHHHHHHHhhcchhhh
Confidence 334444556667777665444322211 1233455555555554433333333332211 111 100111111112222
Q ss_pred HHHHHhhhcCCCChhhHHHH-HHHHHhccCHHHHHHH--HHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q 002716 466 EDLDKATALDPTLSYPYMYR-ASSLMTKQNVEAALAE--INRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTL 541 (889)
Q Consensus 466 ~~~~~al~~dp~~~~a~~~l-a~~~~~~g~~~~Al~~--l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~ 541 (889)
..-..++..+|.+++.+..+ +...+..++...|... +-.-...-| +.+.+...|.+++..|++++|+..|+++.-+
T Consensus 182 S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~ 261 (564)
T KOG1174|consen 182 SLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA 261 (564)
T ss_pred hhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC
Confidence 22334567778887766543 4444555555555444 444455556 8888899999999999999999999999999
Q ss_pred CCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHH
Q 002716 542 SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPE 621 (889)
Q Consensus 542 ~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 621 (889)
+|... .+.-..|.+....|+++.-..+. ...+..+.....-|+--+..++..++++
T Consensus 262 dpy~i------~~MD~Ya~LL~~eg~~e~~~~L~------------------~~Lf~~~~~ta~~wfV~~~~l~~~K~~~ 317 (564)
T KOG1174|consen 262 NPDNV------EAMDLYAVLLGQEGGCEQDSALM------------------DYLFAKVKYTASHWFVHAQLLYDEKKFE 317 (564)
T ss_pred Chhhh------hhHHHHHHHHHhccCHhhHHHHH------------------HHHHhhhhcchhhhhhhhhhhhhhhhHH
Confidence 99998 78778888888899988876666 6677777777778888888889999999
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCCCCcchhhhhhHHH
Q 002716 622 AAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLED 700 (889)
Q Consensus 622 ~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~~~~~~~~~~~~~~~~~ 700 (889)
.|+.+-+++++.+|.+.+++...|.++...|+.++|+-.|+.|+.+.|.. +.|..+...|...+ .+.+
T Consensus 318 rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~-----------~~kE 386 (564)
T KOG1174|consen 318 RALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQK-----------RFKE 386 (564)
T ss_pred HHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhc-----------hHHH
Confidence 99999999999999999999999999999999999999999999998887 77777777777766 5555
Q ss_pred Hhcchhhh----CchhHHHHHHH-HHH-HHcCChHHHHHHHHHHHccCcc--hHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002716 701 ALKCPSDR----LRKGQALNNLG-SVY-VDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIK 772 (889)
Q Consensus 701 Al~~~~~~----~~~~~~~~~Lg-~~y-~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~ 772 (889)
|....... .+.+.++..+| .+. ..-.--++|.+.+++++.++|. .+-..+|.++...|.++.++.++++.+.
T Consensus 387 A~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~ 466 (564)
T KOG1174|consen 387 ANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI 466 (564)
T ss_pred HHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh
Confidence 55444433 22244555554 222 2233346777777777777777 5666677777777777666555555554
Q ss_pred HhccCHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHH
Q 002716 773 KARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLH 842 (889)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~ 842 (889)
..| + ...+..+|+++...+.+++|+..|..|+.++|++.
T Consensus 467 ~~~------------------------------D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 467 IFP------------------------------D-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred hcc------------------------------c-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 444 2 34667788888888888888888888888888763
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-16 Score=165.39 Aligned_cols=292 Identities=18% Similarity=0.157 Sum_probs=212.9
Q ss_pred ccCcchhHHHHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHH
Q 002716 444 SVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFF 522 (889)
Q Consensus 444 ~~~~~g~~~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~ 522 (889)
.....|..+.....| ..|+..|..||+..|+++..|..++..++..|+|++|.-..++.++++| ........+.++
T Consensus 51 ~~k~~gn~~yk~k~Y---~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~ 127 (486)
T KOG0550|consen 51 EAKEEGNAFYKQKTY---GNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCH 127 (486)
T ss_pred HHHhhcchHHHHhhH---HHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhh
Confidence 344466777777777 7888888888888888877788888888888888888888888888877 555666667777
Q ss_pred HhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcC--
Q 002716 523 LALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD-- 600 (889)
Q Consensus 523 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~-- 600 (889)
...++..+|...++ +. .++ ....| +..+++.+...
T Consensus 128 ~a~~~~i~A~~~~~--------~~------~~~-----------~~ana------------------l~~~~~~~~s~s~ 164 (486)
T KOG0550|consen 128 LALSDLIEAEEKLK--------SK------QAY-----------KAANA------------------LPTLEKLAPSHSR 164 (486)
T ss_pred hhhHHHHHHHHHhh--------hh------hhh-----------HHhhh------------------hhhhhcccccccC
Confidence 77777777776666 11 111 01111 11112222222
Q ss_pred -CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHH
Q 002716 601 -APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKA 678 (889)
Q Consensus 601 -p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la 678 (889)
|.-..+...-+.++...|++++|...--..+++++.+.++++..|.+++..++.+.|+.+|++++.++|+. .+-
T Consensus 165 ~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk---- 240 (486)
T KOG0550|consen 165 EPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSK---- 240 (486)
T ss_pred CchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHH----
Confidence 33344556778999999999999999999999999999999999999999999999999999999999998 311
Q ss_pred HHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc------hHHHHHHH
Q 002716 679 YALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT------RAHQGLAR 752 (889)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~------~a~~~La~ 752 (889)
.... .++....+..-|+-.+..|++.+|.++|..+|.++|. ..|.++|.
T Consensus 241 ~~~~-------------------------~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~ 295 (486)
T KOG0550|consen 241 SASM-------------------------MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRAL 295 (486)
T ss_pred hHhh-------------------------hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHh
Confidence 1100 0112246777889999999999999999999999998 56777888
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHH
Q 002716 753 VHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELS 832 (889)
Q Consensus 753 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~ 832 (889)
+....|+. .+|+.+...++.+||....++..+|.++...+++++|++.|+
T Consensus 296 v~~rLgrl------------------------------~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~ 345 (486)
T KOG0550|consen 296 VNIRLGRL------------------------------REAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYE 345 (486)
T ss_pred hhcccCCc------------------------------hhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887 555556666666666666666666666666677777777777
Q ss_pred HHHhcCCC
Q 002716 833 RAIAFKAD 840 (889)
Q Consensus 833 kal~~~p~ 840 (889)
++++...+
T Consensus 346 ~a~q~~~s 353 (486)
T KOG0550|consen 346 KAMQLEKD 353 (486)
T ss_pred HHHhhccc
Confidence 76665544
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-17 Score=178.61 Aligned_cols=257 Identities=17% Similarity=0.096 Sum_probs=77.5
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHcCC--C-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHH
Q 002716 484 YRASSLMTKQNVEAALAEINRILGFK--L-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHML 560 (889)
Q Consensus 484 ~la~~~~~~g~~~~Al~~l~kal~~~--p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~ 560 (889)
.+|.+++..|++++|++.+.+.+... | +...+..+|.+....++++.|+..|++++..++.++ ..+..++.
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~------~~~~~l~~ 86 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANP------QDYERLIQ 86 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc------cccccccc
Confidence 55778888888888888886554433 4 677777777777788888888888888887777766 44444555
Q ss_pred HHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCcH
Q 002716 561 VREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA--ASDH 638 (889)
Q Consensus 561 ~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--p~~~ 638 (889)
+ ...+++++|...+ .++.+.. .++..+.....++...|+++++...++++.... +.++
T Consensus 87 l-~~~~~~~~A~~~~------------------~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 146 (280)
T PF13429_consen 87 L-LQDGDPEEALKLA------------------EKAYERD-GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSA 146 (280)
T ss_dssp ---------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-H
T ss_pred c-ccccccccccccc------------------ccccccc-cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCH
Confidence 5 5677777775555 5555444 334555556666777777777777777765544 4566
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHH
Q 002716 639 ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNL 718 (889)
Q Consensus 639 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~L 718 (889)
..+..+|.++.+.|+.++|++.|+++++.+|++. .+...+
T Consensus 147 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~----------------------------------------~~~~~l 186 (280)
T PF13429_consen 147 RFWLALAEIYEQLGDPDKALRDYRKALELDPDDP----------------------------------------DARNAL 186 (280)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-H----------------------------------------HHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH----------------------------------------HHHHHH
Confidence 7777777777777777777777777777777762 133334
Q ss_pred HHHHHHcCChHHHHHHHHHHHccCcc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhcCCHHHHHHH
Q 002716 719 GSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRAD 796 (889)
Q Consensus 719 g~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~A~~~ 796 (889)
+.++...|+++++...++...+..|+ ..+..+|.++...|++ ++|+..
T Consensus 187 ~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~------------------------------~~Al~~ 236 (280)
T PF13429_consen 187 AWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRY------------------------------EEALEY 236 (280)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-H------------------------------HHHHHH
T ss_pred HHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccc------------------------------cccccc
Confidence 44444555555555555444444333 4455566666666666 333344
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 002716 797 LEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIA 836 (889)
Q Consensus 797 l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~ 836 (889)
|++++..+|+++..+..+|.++...|+.++|...+.+++.
T Consensus 237 ~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 237 LEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccccccccccc
Confidence 4444444555666666666666666666666666666543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.8e-16 Score=166.72 Aligned_cols=230 Identities=13% Similarity=-0.010 Sum_probs=138.0
Q ss_pred ccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChH
Q 002716 526 EDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV 605 (889)
Q Consensus 526 g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~ 605 (889)
+..+.++..+.++|...|..+... ...++.+|.++...|++++|...| +++++.+|+++.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~--a~~~~~~g~~~~~~g~~~~A~~~~------------------~~Al~l~P~~~~ 99 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEER--AQLHYERGVLYDSLGLRALARNDF------------------SQALALRPDMAD 99 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhh--HHHHHHHHHHHHHCCCHHHHHHHH------------------HHHHHcCCCCHH
Confidence 344555555555554333222111 144556666666666666664444 666666666666
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcC
Q 002716 606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSS 685 (889)
Q Consensus 606 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~ 685 (889)
+++.+|.++...|++++|+..|+++++++|++..++.++|.+++..|++++|++.|+++++++|++....
T Consensus 100 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~---------- 169 (296)
T PRK11189 100 AYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRA---------- 169 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH----------
Confidence 6666666666667777777777777777776666667777777667777777777777766666652000
Q ss_pred CCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcchHHHHHHHHHHHcCCHHHHHH
Q 002716 686 QDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYE 765 (889)
Q Consensus 686 ~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~~a~~~La~~~~~~g~~~~A~~ 765 (889)
.|.. +....+++++|+..|+++....+...+. .+.++...|+..++ .
T Consensus 170 ----------------------------~~~~---l~~~~~~~~~A~~~l~~~~~~~~~~~~~-~~~~~~~lg~~~~~-~ 216 (296)
T PRK11189 170 ----------------------------LWLY---LAESKLDPKQAKENLKQRYEKLDKEQWG-WNIVEFYLGKISEE-T 216 (296)
T ss_pred ----------------------------HHHH---HHHccCCHHHHHHHHHHHHhhCCccccH-HHHHHHHccCCCHH-H
Confidence 1111 1123456677777776655443322221 34444555555332 1
Q ss_pred HHHHHHHHhccCHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCH
Q 002716 766 EMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL 841 (889)
Q Consensus 766 ~~~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~ 841 (889)
.++. +...++.+.++.|....+|+++|.++.+.|++++|+..|+++++.+|.+
T Consensus 217 ~~~~-----------------------~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 217 LMER-----------------------LKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred HHHH-----------------------HHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 2222 2222333445567778899999999999999999999999999999754
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.2e-15 Score=168.98 Aligned_cols=281 Identities=12% Similarity=0.041 Sum_probs=215.7
Q ss_pred hHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHhcccHHHHHHHHHHHH
Q 002716 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL--ECLELRFCFFLALEDYQAALCDVQAIL 539 (889)
Q Consensus 462 ~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p~~--~~l~~~a~~~~~~g~~~~A~~~~~~al 539 (889)
+.|.+.+.++.+..|+....+...|.++..+|++++|...++++.+..|+. ......+.++...|++++|...++.++
T Consensus 101 ~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~ 180 (409)
T TIGR00540 101 AKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLL 180 (409)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777777788888888888888888999999999999999999999888833 455557999999999999999999999
Q ss_pred HhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHH----HHHHHHHH
Q 002716 540 TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLY----FRQSLLLL 615 (889)
Q Consensus 540 ~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~----~~la~~~~ 615 (889)
+..|+++ .++..++.++...|+|++|...+ .+..+..+.++... ......+.
T Consensus 181 ~~~P~~~------~~l~ll~~~~~~~~d~~~a~~~l------------------~~l~k~~~~~~~~~~~l~~~a~~~~l 236 (409)
T TIGR00540 181 EMAPRHK------EVLKLAEEAYIRSGAWQALDDII------------------DNMAKAGLFDDEEFADLEQKAEIGLL 236 (409)
T ss_pred HhCCCCH------HHHHHHHHHHHHHhhHHHHHHHH------------------HHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 9999999 89999999999999999997777 66666544333322 12222234
Q ss_pred HhCCHHHHHHHHHHHHHcCC----CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHH--HHHHHHHHHcCCCC
Q 002716 616 RLNCPEAAMRSLQLARQHAA----SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAF--FLKAYALADSSQDS 688 (889)
Q Consensus 616 ~~g~~~~A~~~l~~al~~~p----~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~--~~la~~~~~~~~~~ 688 (889)
..+..+++...+..+.+..| +++..+..+|..+...|++++|.+.++++++..|++ ... ..........+
T Consensus 237 ~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~--- 313 (409)
T TIGR00540 237 DEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPE--- 313 (409)
T ss_pred HHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCC---
Confidence 45555666678888888777 588999999999999999999999999999999988 321 11222212222
Q ss_pred CcchhhhhhHHHHhcchhhhCchh--HHHHHHHHHHHHcCChHHHHHHHH--HHHccCcc-hHHHHHHHHHHHcCCHHHH
Q 002716 689 SCSSTVVSLLEDALKCPSDRLRKG--QALNNLGSVYVDCGQLDLAADCYS--NALKIRHT-RAHQGLARVHFLKNNKTTA 763 (889)
Q Consensus 689 ~~~~~~~~~~~~Al~~~~~~~~~~--~~~~~Lg~~y~~~g~~~~A~~~~~--~al~~~p~-~a~~~La~~~~~~g~~~~A 763 (889)
......+.++.++ +..+..+ ..+..+|.++...|++++|.++|+ ++++..|+ ..+..+|.++...|+.++|
T Consensus 314 -~~~~~~~~~e~~l---k~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A 389 (409)
T TIGR00540 314 -DNEKLEKLIEKQA---KNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEA 389 (409)
T ss_pred -ChHHHHHHHHHHH---HhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHH
Confidence 1112222222222 2224445 778899999999999999999999 68888888 5677999999999999999
Q ss_pred HHHHHHHHHH
Q 002716 764 YEEMTKLIKK 773 (889)
Q Consensus 764 ~~~~~~al~~ 773 (889)
.+++++++..
T Consensus 390 ~~~~~~~l~~ 399 (409)
T TIGR00540 390 AAMRQDSLGL 399 (409)
T ss_pred HHHHHHHHHH
Confidence 9999988654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-17 Score=179.42 Aligned_cols=256 Identities=16% Similarity=0.156 Sum_probs=111.8
Q ss_pred hhHHHHHhhcCChhHHHHHHHHhh-hc-CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhc
Q 002716 449 GWMYQERSLYCEGDKRWEDLDKAT-AL-DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLAL 525 (889)
Q Consensus 449 g~~~~~~~~~~~~~~A~~~~~~al-~~-dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~ 525 (889)
+.++...+.+ ++|+..+++.+ .. +|+++..|..+|.+....+++++|+..|++++..++ ++..+..++.+ ...
T Consensus 15 A~~~~~~~~~---~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 15 ARLLYQRGDY---EKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccc---ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 4455555666 78888886554 44 588899999999999999999999999999999988 77777777777 789
Q ss_pred ccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcC--CCC
Q 002716 526 EDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD--APK 603 (889)
Q Consensus 526 g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~--p~~ 603 (889)
+++++|+..++++.+.+++.. .+.....++...++++++...+ .++.... |.+
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~-------~l~~~l~~~~~~~~~~~~~~~l------------------~~~~~~~~~~~~ 145 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPR-------YLLSALQLYYRLGDYDEAEELL------------------EKLEELPAAPDS 145 (280)
T ss_dssp ----------------------------------H-HHHTT-HHHHHHHH------------------HHHHH-T---T-
T ss_pred ccccccccccccccccccccc-------hhhHHHHHHHHHhHHHHHHHHH------------------HHHHhccCCCCC
Confidence 999999999999988765433 4555667788999999997777 6655444 678
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 002716 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALAD 683 (889)
Q Consensus 604 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~ 683 (889)
+..+..+|.++.+.|++++|++.|+++++.+|+++.+...+++++...|+++++.+.++...+..|++
T Consensus 146 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~------------ 213 (280)
T PF13429_consen 146 ARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDD------------ 213 (280)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTS------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCH------------
Confidence 88999999999999999999999999999999999999999999999999999887777665433332
Q ss_pred cCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--hHHHHHHHHHHHcCCHH
Q 002716 684 SSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKT 761 (889)
Q Consensus 684 ~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~ 761 (889)
+..+..+|.+|...|++++|+.+|+++++.+|+ ..+..+|.++...|+.+
T Consensus 214 ----------------------------~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~ 265 (280)
T PF13429_consen 214 ----------------------------PDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKD 265 (280)
T ss_dssp ----------------------------CCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------
T ss_pred ----------------------------HHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccc
Confidence 135667888999999999999999999999997 78888999999999999
Q ss_pred HHHHHHHHHHHH
Q 002716 762 TAYEEMTKLIKK 773 (889)
Q Consensus 762 ~A~~~~~~al~~ 773 (889)
+|..++.+++..
T Consensus 266 ~A~~~~~~~~~~ 277 (280)
T PF13429_consen 266 EALRLRRQALRL 277 (280)
T ss_dssp ------------
T ss_pred cccccccccccc
Confidence 999998888653
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.9e-15 Score=169.71 Aligned_cols=381 Identities=12% Similarity=0.029 Sum_probs=242.4
Q ss_pred hHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 002716 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILT 540 (889)
Q Consensus 462 ~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~ 540 (889)
..|...|-+++.+||+...+|..+|.+|..-.+...|.+.|+++.++++ +..+....+..|....+++.|..+.-.+-+
T Consensus 475 ~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~q 554 (1238)
T KOG1127|consen 475 ALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQ 554 (1238)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhh
Confidence 5566666677777777777777777777666666677777777777776 666666666667777777777666444433
Q ss_pred hCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCH
Q 002716 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP 620 (889)
Q Consensus 541 ~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 620 (889)
..|... . ...|..+|..|...++...|+++| +.++..+|.+...|..+|.+|.+.|++
T Consensus 555 ka~a~~---~-k~nW~~rG~yyLea~n~h~aV~~f------------------QsALR~dPkD~n~W~gLGeAY~~sGry 612 (1238)
T KOG1127|consen 555 KAPAFA---C-KENWVQRGPYYLEAHNLHGAVCEF------------------QSALRTDPKDYNLWLGLGEAYPESGRY 612 (1238)
T ss_pred hchHHH---H-HhhhhhccccccCccchhhHHHHH------------------HHHhcCCchhHHHHHHHHHHHHhcCce
Confidence 333222 1 123444666666666777776666 667777777777777777777777777
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh--------HHHHHHHHHHHHcCCCCCcch
Q 002716 621 EAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF--------EAFFLKAYALADSSQDSSCSS 692 (889)
Q Consensus 621 ~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~--------~a~~~la~~~~~~~~~~~~~~ 692 (889)
..|++.|.++...+|.+....+..+.+....|.|.+|+..+...+...... +.+...+..+...|....
T Consensus 613 ~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~k--- 689 (1238)
T KOG1127|consen 613 SHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKK--- 689 (1238)
T ss_pred ehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhh---
Confidence 777777777777777766666666777777777777777666666543322 222222222222331111
Q ss_pred hhhhhHHHHhcchhhhCc-----hhHHHHHHH-------------------HHHH----HcCCh------HHHHHHHHHH
Q 002716 693 TVVSLLEDALKCPSDRLR-----KGQALNNLG-------------------SVYV----DCGQL------DLAADCYSNA 738 (889)
Q Consensus 693 ~~~~~~~~Al~~~~~~~~-----~~~~~~~Lg-------------------~~y~----~~g~~------~~A~~~~~~a 738 (889)
...-++++++.+.-.+. ....|..+| .++. .++.. --|.+++-..
T Consensus 690 -avd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~h 768 (1238)
T KOG1127|consen 690 -AVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAH 768 (1238)
T ss_pred -hhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHH
Confidence 11122222222211100 001111111 1111 11111 2355566655
Q ss_pred HccCcc-hHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHhccCHHHHHHHHhc---CCHHHHHHHHHHHHhcCCC
Q 002716 739 LKIRHT-RAHQGLARVHFL--------KNNKTTAYEEMTKLIKKARNNASAYEKRSEY---CDRELTRADLEMVTQLDPL 806 (889)
Q Consensus 739 l~~~p~-~a~~~La~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~---~~~~~A~~~l~~al~l~p~ 806 (889)
++.... ..|++||.-|+. +.+...|+..+.++++...++...+..++.. |++.-|...|.+.+...|.
T Consensus 769 lsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep~ 848 (1238)
T KOG1127|consen 769 LSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEPT 848 (1238)
T ss_pred HHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHhhccchhhhhhhhhhhhhhcccc
Confidence 555444 778888887766 2234578899999999999998888888875 6888899999999999999
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002716 807 RVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL-HLLHLRAAFHEHTGDVLGALRDCRAAL 868 (889)
Q Consensus 807 ~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~-~~l~l~a~~~~~~g~~~~A~~~~~~al 868 (889)
....|.++|.++.+..+++.|...++++..+.|.+ ..+.-.+.+..+.|+.-+++..+.-.-
T Consensus 849 ~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~ 911 (1238)
T KOG1127|consen 849 CHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSD 911 (1238)
T ss_pred chhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhH
Confidence 99999999999999999999999999999999987 333355677777788888888887633
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.6e-15 Score=166.88 Aligned_cols=425 Identities=15% Similarity=0.045 Sum_probs=313.9
Q ss_pred CCcHHHHHHHhhhhhccCcchhHHHHHhhc----CChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Q 002716 429 GHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINR 504 (889)
Q Consensus 429 g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~k 504 (889)
.+...|+..+-+.+....+.|-+|.-.|.| .+...|..+|++|.++||++..+.-..+..|.+..+++.|....-.
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 335556666666666666555444444432 2558899999999999999999999999999999999999999877
Q ss_pred HHcCCC---CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhc
Q 002716 505 ILGFKL---ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRW 581 (889)
Q Consensus 505 al~~~p---~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~ 581 (889)
+-+..| ....+..+|-.|...+++..|+..++.+++.+|++. ..|..+|.+|...|.+..|.+.|
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~------n~W~gLGeAY~~sGry~~AlKvF------ 619 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDY------NLWLGLGEAYPESGRYSHALKVF------ 619 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhH------HHHHHHHHHHHhcCceehHHHhh------
Confidence 777777 344455599999999999999999999999999999 89999999999999999997777
Q ss_pred ccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc-------HHHHHHHHHHHHhcCCH
Q 002716 582 SSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD-------HERLVYEGWILYDTSHC 654 (889)
Q Consensus 582 ~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-------~~~~~~lg~~~~~~g~~ 654 (889)
.++..++|.+....+..+.+....|+|.+|+..+...+...... ++.+...+..+...|-.
T Consensus 620 ------------~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~ 687 (1238)
T KOG1127|consen 620 ------------TKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQ 687 (1238)
T ss_pred ------------hhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999887665433 44555566666667777
Q ss_pred HHHHHHHHHHHhc-------C-CCh-HHHHHHHHHHHHcCCCCCc-c-----------------hhhhhhHHHHhcchhh
Q 002716 655 EEGLRKAEESIQM-------K-RSF-EAFFLKAYALADSSQDSSC-S-----------------STVVSLLEDALKCPSD 707 (889)
Q Consensus 655 ~eA~~~~~~al~~-------~-p~~-~a~~~la~~~~~~~~~~~~-~-----------------~~~~~~~~~Al~~~~~ 707 (889)
.+|...+++++.. . .++ -.|..++.+..-......+ . .+....+--+.+++..
T Consensus 688 ~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~ 767 (1238)
T KOG1127|consen 688 KKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIA 767 (1238)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhH
Confidence 7777777776642 1 122 2333333222111100000 0 0000011222333333
Q ss_pred hCch---hHHHHHHHHHHHH--------cCChHHHHHHHHHHHccCcc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 002716 708 RLRK---GQALNNLGSVYVD--------CGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKA 774 (889)
Q Consensus 708 ~~~~---~~~~~~Lg~~y~~--------~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~ 774 (889)
.+.. ...|++||.-|.. +.+...|+.++.+++++..+ ..|..||.+ ...|++.-|...|-+.+...
T Consensus 768 hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se 846 (1238)
T KOG1127|consen 768 HLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE 846 (1238)
T ss_pred HHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc
Confidence 3222 5688999988876 23345799999999998766 788889988 66699999999999999999
Q ss_pred ccCHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC------CCHHHH
Q 002716 775 RNNASAYEKRSEY----CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFK------ADLHLL 844 (889)
Q Consensus 775 ~~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~------p~~~~l 844 (889)
|.....|.+.+.. .+.+.|...|.++..++|.+...|...|.+....|+.-++...+....++. |+...+
T Consensus 847 p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw 926 (1238)
T KOG1127|consen 847 PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYW 926 (1238)
T ss_pred ccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHH
Confidence 9999888888885 699999999999999999999999999999999999999999988743332 233444
Q ss_pred HHHHHHHHHcCCHHHHHH----------HHHHHHccCCCCHHHH
Q 002716 845 HLRAAFHEHTGDVLGALR----------DCRAALSVDPNDQEML 878 (889)
Q Consensus 845 ~l~a~~~~~~g~~~~A~~----------~~~~al~l~P~~~~~l 878 (889)
...-..+.+.|++++-+. ..++.+.-.|++.-++
T Consensus 927 ~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy 970 (1238)
T KOG1127|consen 927 LCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAY 970 (1238)
T ss_pred HHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHH
Confidence 444455555566555444 3444455667665443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.1e-17 Score=162.51 Aligned_cols=231 Identities=15% Similarity=0.032 Sum_probs=200.6
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHH
Q 002716 484 YRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVRE 563 (889)
Q Consensus 484 ~la~~~~~~g~~~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~ 563 (889)
.+|++|++.|.+.+|.+.++..+...|.++.+.+++.+|....+...|+..|.+.+...|.+. ..+...+.++.
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~V------T~l~g~ARi~e 301 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDV------TYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchh------hhhhhhHHHHH
Confidence 579999999999999999999999999999999999999999999999999999999999988 56667778999
Q ss_pred HhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHH
Q 002716 564 HIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVY 643 (889)
Q Consensus 564 ~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~ 643 (889)
.++++++|.+++ +.+++.+|.+.++..-+|..|+..|+++-|+++|++.+++.-.+++.+.+
T Consensus 302 am~~~~~a~~lY------------------k~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~N 363 (478)
T KOG1129|consen 302 AMEQQEDALQLY------------------KLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCN 363 (478)
T ss_pred HHHhHHHHHHHH------------------HHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhh
Confidence 999999997777 99999999999988888888999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHH
Q 002716 644 EGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYV 723 (889)
Q Consensus 644 lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~ 723 (889)
+|.+....++++-++..|++++....+. -..+++|+|+|.+..
T Consensus 364 igLCC~yaqQ~D~~L~sf~RAlstat~~-------------------------------------~~aaDvWYNlg~vaV 406 (478)
T KOG1129|consen 364 IGLCCLYAQQIDLVLPSFQRALSTATQP-------------------------------------GQAADVWYNLGFVAV 406 (478)
T ss_pred HHHHHHhhcchhhhHHHHHHHHhhccCc-------------------------------------chhhhhhhccceeEE
Confidence 9999999999999999999888543211 011368999999999
Q ss_pred HcCChHHHHHHHHHHHccCcc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Q 002716 724 DCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKAR 775 (889)
Q Consensus 724 ~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~ 775 (889)
..|++..|..+|+-++..+++ .++.+||.+-.+.|+.++|..+++.+-...|
T Consensus 407 ~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 407 TIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred eccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 999999999999999988887 8899999999999999777777777666666
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.4e-16 Score=157.19 Aligned_cols=259 Identities=17% Similarity=0.069 Sum_probs=218.0
Q ss_pred HHHhccCHHHHHHHHHHHHcCC---C--------CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHH
Q 002716 488 SLMTKQNVEAALAEINRILGFK---L--------ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQ 556 (889)
Q Consensus 488 ~~~~~g~~~~Al~~l~kal~~~---p--------~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ 556 (889)
+++...+...|-......+..+ | +-.+...+|.||+++|-+.+|.+.++..|+..|.- +.+.
T Consensus 188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~-------dTfl 260 (478)
T KOG1129|consen 188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHP-------DTFL 260 (478)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCch-------hHHH
Confidence 3455566666654444433321 2 22334567999999999999999999999988755 4888
Q ss_pred HHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC
Q 002716 557 LHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS 636 (889)
Q Consensus 557 ~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 636 (889)
+|+.+|.+..+...|+..+ .+.++..|.+...+..++.++..++++++|.++|+.+++.+|.
T Consensus 261 lLskvY~ridQP~~AL~~~------------------~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~ 322 (478)
T KOG1129|consen 261 LLSKVYQRIDQPERALLVI------------------GEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPI 322 (478)
T ss_pred HHHHHHHHhccHHHHHHHH------------------hhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCc
Confidence 9999999999999996666 9999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHH
Q 002716 637 DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALN 716 (889)
Q Consensus 637 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~ 716 (889)
+.++.--+|.-|+.-|+.+-|+.+|++++++.-.+ ++.+.
T Consensus 323 nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~s----------------------------------------peLf~ 362 (478)
T KOG1129|consen 323 NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQS----------------------------------------PELFC 362 (478)
T ss_pred cceeeeeeeeccccCCChHHHHHHHHHHHHhcCCC----------------------------------------hHHHh
Confidence 99999999999999999999999999998554322 36889
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHccCc--c---hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhcCCHH
Q 002716 717 NLGSVYVDCGQLDLAADCYSNALKIRH--T---RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRE 791 (889)
Q Consensus 717 ~Lg~~y~~~g~~~~A~~~~~~al~~~p--~---~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 791 (889)
|+|.+.+..+++|-++..|++|+.... + +.|+++|.+....|++ .
T Consensus 363 NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~------------------------------n 412 (478)
T KOG1129|consen 363 NIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDF------------------------------N 412 (478)
T ss_pred hHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccch------------------------------H
Confidence 999999999999999999999998753 3 8999999998888888 6
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCH
Q 002716 792 LTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL 841 (889)
Q Consensus 792 ~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~ 841 (889)
.|...|+-++..||++.+++.++|.+-.+.|+.++|..+++.|-...|+.
T Consensus 413 lA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 413 LAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred HHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 67777777788888888888888888888899999999888888888874
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-14 Score=163.15 Aligned_cols=305 Identities=13% Similarity=0.081 Sum_probs=226.3
Q ss_pred HHHHHHHHhhhHHHhcccHHHHHHHHHHHHHcCcchhH--hhHHHHHhhcCCcHHHHHHHhhhhhccCcchhHHHHHhhc
Q 002716 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSI--AGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY 458 (889)
Q Consensus 381 ~~~~a~~~lG~~~~~~g~~~eA~~~~~~al~~~~~~~~--~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~ 458 (889)
.++...+.-|...+..|+|++|++...++.+..+.... ...+++ ...++.+
T Consensus 82 ~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~a---------------------------A~~~g~~ 134 (398)
T PRK10747 82 RRARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEA---------------------------AQQRGDE 134 (398)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHH---------------------------HHHCCCH
Confidence 34556678888999999999999888877654322111 111222 2334445
Q ss_pred CChhHHHHHHHHhhhcCCCChhhH-HHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHH
Q 002716 459 CEGDKRWEDLDKATALDPTLSYPY-MYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQ 536 (889)
Q Consensus 459 ~~~~~A~~~~~~al~~dp~~~~a~-~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~ 536 (889)
+.|...+.++.+.+|+...+. ...+.++...|++++|+..++++.+..| ++.++..++.+|...|++++|+..+.
T Consensus 135 ---~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~ 211 (398)
T PRK10747 135 ---ARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILP 211 (398)
T ss_pred ---HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 788888999999999986544 4458999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 002716 537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR 616 (889)
Q Consensus 537 ~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~ 616 (889)
++.+..+.+.....+......++......++ .....+ ...+++..+..|+++.+...++..+..
T Consensus 212 ~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~--~~~~~l--------------~~~w~~lp~~~~~~~~~~~~~A~~l~~ 275 (398)
T PRK10747 212 SMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD--QGSEGL--------------KRWWKNQSRKTRHQVALQVAMAEHLIE 275 (398)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh--cCHHHH--------------HHHHHhCCHHHhCCHHHHHHHHHHHHH
Confidence 9998776654222211111111111111111 111111 222344445567889999999999999
Q ss_pred hCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhh
Q 002716 617 LNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVS 696 (889)
Q Consensus 617 ~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~ 696 (889)
.|+.++|...++++++..| ++......+.+ ..++.+++++..++.++.+|++.
T Consensus 276 ~g~~~~A~~~L~~~l~~~~-~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~------------------------ 328 (398)
T PRK10747 276 CDDHDTAQQIILDGLKRQY-DERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTP------------------------ 328 (398)
T ss_pred CCCHHHHHHHHHHHHhcCC-CHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCH------------------------
Confidence 9999999999999999544 55554444444 44899999999999998888873
Q ss_pred hHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc-hHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 002716 697 LLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-RAHQGLARVHFLKNNKTTAYEEMTKLIKKA 774 (889)
Q Consensus 697 ~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~-~a~~~La~~~~~~g~~~~A~~~~~~al~~~ 774 (889)
..+..+|.++...|++++|.++|+++++..|+ ..+..++.++...|+.++|..+|++.+...
T Consensus 329 ----------------~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 329 ----------------LLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred ----------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 35677788889999999999999999999999 667899999999999999999999887653
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.8e-15 Score=161.43 Aligned_cols=220 Identities=19% Similarity=0.106 Sum_probs=136.3
Q ss_pred cCHHHHHHHHHHHHcC---CC--CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhc
Q 002716 493 QNVEAALAEINRILGF---KL--ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDN 567 (889)
Q Consensus 493 g~~~~Al~~l~kal~~---~p--~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~ 567 (889)
++.+.++..+++++.. +| .+..++.+|.+|...|++++|+..|+++++.+|+++ .+++.+|.++...|+
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~------~a~~~lg~~~~~~g~ 113 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMA------DAYNYLGIYLTQAGN 113 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH------HHHHHHHHHHHHCCC
Confidence 4556666777777653 33 345566777777777777777777777777777776 677777777777777
Q ss_pred hhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 002716 568 WTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWI 647 (889)
Q Consensus 568 ~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~ 647 (889)
+++|...+ +++++.+|++..++.++|.++...|++++|++.++++++.+|+++...... .+
T Consensus 114 ~~~A~~~~------------------~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~-~l 174 (296)
T PRK11189 114 FDAAYEAF------------------DSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWL-YL 174 (296)
T ss_pred HHHHHHHH------------------HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH-HH
Confidence 77775555 777777777777777777777777777777777777777777765322111 22
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhh----CchhHHHHHHHHHHH
Q 002716 648 LYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR----LRKGQALNNLGSVYV 723 (889)
Q Consensus 648 ~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~----~~~~~~~~~Lg~~y~ 723 (889)
....+++++|+..+++++...+.. .+. .+.+....+... . .+.++.+.+.++.. .+...+|+++|.++.
T Consensus 175 ~~~~~~~~~A~~~l~~~~~~~~~~-~~~-~~~~~~~lg~~~----~-~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~ 247 (296)
T PRK11189 175 AESKLDPKQAKENLKQRYEKLDKE-QWG-WNIVEFYLGKIS----E-ETLMERLKAGATDNTELAERLCETYFYLAKYYL 247 (296)
T ss_pred HHccCCHHHHHHHHHHHHhhCCcc-ccH-HHHHHHHccCCC----H-HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 334566777777776655432221 111 122222222110 0 01222233222222 122568889999999
Q ss_pred HcCChHHHHHHHHHHHccCcc
Q 002716 724 DCGQLDLAADCYSNALKIRHT 744 (889)
Q Consensus 724 ~~g~~~~A~~~~~~al~~~p~ 744 (889)
..|++++|+.+|+++++.+|.
T Consensus 248 ~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 248 SLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred HCCCHHHHHHHHHHHHHhCCc
Confidence 999999999999999988864
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.4e-14 Score=154.55 Aligned_cols=363 Identities=18% Similarity=0.100 Sum_probs=266.4
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHH
Q 002716 480 YPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLH 558 (889)
Q Consensus 480 ~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l 558 (889)
.+++.++.-.++.++|.+.++.+++++...| ..+.+.+.|..+..+|+.++|....+.++..|+... ..|+.+
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~------vCwHv~ 81 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSH------VCWHVL 81 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccc------hhHHHH
Confidence 3556666677788899999999999998888 888888999999999999999999999999888888 688899
Q ss_pred HHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcH
Q 002716 559 MLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH 638 (889)
Q Consensus 559 g~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~ 638 (889)
|.++....+|++|++++ ..|+..+|+|..++.-++.+..++++++.....-.+.++..|...
T Consensus 82 gl~~R~dK~Y~eaiKcy------------------~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~r 143 (700)
T KOG1156|consen 82 GLLQRSDKKYDEAIKCY------------------RNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQR 143 (700)
T ss_pred HHHHhhhhhHHHHHHHH------------------HHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhH
Confidence 99999999999998888 889999999999999999999999999988888888888889888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCh------HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhh-
Q 002716 639 ERLVYEGWILYDTSHCEEGLRKAEESIQMK---RSF------EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR- 708 (889)
Q Consensus 639 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~---p~~------~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~- 708 (889)
..|...+..+.-.|++..|....+...+.. |+. +.......++...| .+++|++.....
T Consensus 144 a~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g-----------~~q~ale~L~~~e 212 (700)
T KOG1156|consen 144 ASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAG-----------SLQKALEHLLDNE 212 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcc-----------cHHHHHHHHHhhh
Confidence 888888888888899998888777766544 443 33334445555555 556666655554
Q ss_pred ---CchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--hHHHHHHHHHHHcCCHHHHH-HHHHHHHHHhcc------
Q 002716 709 ---LRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAY-EEMTKLIKKARN------ 776 (889)
Q Consensus 709 ---~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~-~~~~~al~~~~~------ 776 (889)
..+.......|.++...+++++|...|...+..+|+ ..+.++-.++..-.+.-+++ ..|...-+..|.
T Consensus 213 ~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~R 292 (700)
T KOG1156|consen 213 KQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRR 292 (700)
T ss_pred hHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchh
Confidence 233445566788999999999999999999999999 33444444443233333444 445544444430
Q ss_pred -------CHHH------HHH--------------HHhcCCHHHHHHHHHHHH-------hcC------------CCC--h
Q 002716 777 -------NASA------YEK--------------RSEYCDRELTRADLEMVT-------QLD------------PLR--V 808 (889)
Q Consensus 777 -------~~~~------~~~--------------~~~~~~~~~A~~~l~~al-------~l~------------p~~--~ 808 (889)
.... |.. .+.|.+.... ..+++.+ .-. |-. .
T Consensus 293 lplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~-~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Pttll 371 (700)
T KOG1156|consen 293 LPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKV-AFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLL 371 (700)
T ss_pred ccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHh-HHHHHHHHHHHhhcccccCCCcccccccCCchHHH
Confidence 0000 000 0111222211 1222221 111 111 3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q 002716 809 YPYRYRAAVLMDSHKENEAIAELSRAIAFKADL-HLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEML 878 (889)
Q Consensus 809 ~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~-~~l~l~a~~~~~~g~~~~A~~~~~~al~l~P~~~~~l 878 (889)
+.++.++.-+-..|+++.|..+++.|+..-|+. +.+...|.++.+.|++++|...+..+-++|-.|.-+-
T Consensus 372 Wt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~IN 442 (700)
T KOG1156|consen 372 WTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAIN 442 (700)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHH
Confidence 456778899999999999999999999999997 5555889999999999999999999999986665443
|
|
| >KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.9e-17 Score=172.20 Aligned_cols=157 Identities=22% Similarity=0.358 Sum_probs=141.7
Q ss_pred ccCcccCCCCccccEEEEeCC-----eEEEehHHHHhhcChhhhhhhcCCCCCCCcCceEecCCCCCHHHHHHHHHhhcc
Q 002716 170 HETVSMSGDQVLRNVVFRIHE-----EKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVT 244 (889)
Q Consensus 170 ~~~~~~~~~~~~~Dv~~~v~~-----~~~~~hr~vLaa~s~~F~~mf~~~~~e~~~~~i~l~~~~~~~~~~~~ll~~~Yt 244 (889)
+....+.+++..+||.|+|++ ++|||||.|||..|++|.+||+|++.|+...+|.++| +.|.+|..+|.|+|+
T Consensus 103 er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpd--vepaaFl~~L~flYs 180 (521)
T KOG2075|consen 103 ERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPD--VEPAAFLAFLRFLYS 180 (521)
T ss_pred HhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCC--cChhHhHHHHHHHhc
Confidence 344456789999999999973 5899999999999999999999999999889999996 999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCChhhHHHHHHHHhhhcccccChHHH
Q 002716 245 GSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERV 324 (889)
Q Consensus 245 ~~~~~~~~~~~~~ll~~A~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~~l~~~c~~~~~~~l~~~l~~~~~ 324 (889)
+.+. +.+++++.+|.+|++|....|++.|-..+...++.......+.+.|....-+.|+..|++++..++...+..+.|
T Consensus 181 dev~-~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~~~al~~EGf 259 (521)
T KOG2075|consen 181 DEVK-LAADTVITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQRAKLFDEPSLISICLEVIDKSFEDALTPEGF 259 (521)
T ss_pred chhh-hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHHHhhhCccce
Confidence 9999 999999999999999999999999999999998777677777777999999999999999999998888877777
Q ss_pred HHHhc
Q 002716 325 VEIFS 329 (889)
Q Consensus 325 ~~ll~ 329 (889)
+.+=+
T Consensus 260 ~did~ 264 (521)
T KOG2075|consen 260 CDIDS 264 (521)
T ss_pred eehhh
Confidence 66543
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.6e-15 Score=154.83 Aligned_cols=354 Identities=14% Similarity=0.070 Sum_probs=254.2
Q ss_pred HHHHhhcCCcHHHHHHHhhhhhccC-------cchhHHHHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccC
Q 002716 422 ARLGYIKGHKLWAYEKLNSVISSVT-------PLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQN 494 (889)
Q Consensus 422 a~~~~~~g~~~~A~~~~~~~~~~~~-------~~g~~~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~ 494 (889)
+..++++..+..|++.+...|...+ +....+...+.| +.|..+.++.++++|....++...+.++...++
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~---~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRF---EEALGDARQSVRLKDGFSKGQLREGQCHLALSD 132 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhH---hhcccchhhheecCCCccccccchhhhhhhhHH
Confidence 3455666667777777776665544 455556666777 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHH
Q 002716 495 VEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCW 574 (889)
Q Consensus 495 ~~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~ 574 (889)
..+|...++. ..++ ....|+..+++++..+...+ ... .+..+-+.++...+++++|...
T Consensus 133 ~i~A~~~~~~-------~~~~-----------~~anal~~~~~~~~s~s~~p-ac~--~a~~lka~cl~~~~~~~~a~~e 191 (486)
T KOG0550|consen 133 LIEAEEKLKS-------KQAY-----------KAANALPTLEKLAPSHSREP-ACF--KAKLLKAECLAFLGDYDEAQSE 191 (486)
T ss_pred HHHHHHHhhh-------hhhh-----------HHhhhhhhhhcccccccCCc-hhh--HHHHhhhhhhhhcccchhHHHH
Confidence 8888877761 1111 22334444444443322221 111 4566677899999999999555
Q ss_pred HHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcH------------HHHH
Q 002716 575 LQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH------------ERLV 642 (889)
Q Consensus 575 ~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~------------~~~~ 642 (889)
- ...+++++.+..+++..|.++...++.+.|+..|++++.++|+.. +.+.
T Consensus 192 a------------------~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 192 A------------------IDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred H------------------HHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHH
Confidence 4 888999999999999999999999999999999999999999754 3466
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHH
Q 002716 643 YEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSV 721 (889)
Q Consensus 643 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~ 721 (889)
..|.-.++.|++.+|.+.|..+|.++|++ .. .+..|.+++.+
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~-------------------------------------naklY~nra~v 296 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKT-------------------------------------NAKLYGNRALV 296 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCCccccch-------------------------------------hHHHHHHhHhh
Confidence 78999999999999999999999999997 20 02467888999
Q ss_pred HHHcCChHHHHHHHHHHHccCcc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhcCCHHHHHHHHHH
Q 002716 722 YVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEM 799 (889)
Q Consensus 722 y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~~ 799 (889)
....|+..+|+...+.++++++. .++...|.++...++|++|.+.|+++++...+ ......+ .+|...+++
T Consensus 297 ~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l------~~A~~aLkk 369 (486)
T KOG0550|consen 297 NIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTL------REAQLALKK 369 (486)
T ss_pred hcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHH------HHHHHHHHH
Confidence 99999999999999999999999 88889999999999999999999999987764 2221111 333333333
Q ss_pred HHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCH---------HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002716 800 VTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL---------HLLHLRAAFHEHTGDVLGALRDCRAA 867 (889)
Q Consensus 800 al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~---------~~l~l~a~~~~~~g~~~~A~~~~~~a 867 (889)
+-.. ..|..+|......... --..+-..+|...|+- ..+...+..|..++|+.++.+.+.-.
T Consensus 370 SkRk-----d~ykilGi~~~as~~e-ikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~ 440 (486)
T KOG0550|consen 370 SKRK-----DWYKILGISRNASDDE-IKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQ 440 (486)
T ss_pred hhhh-----hHHHHhhhhhhcccch-hhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccccc
Confidence 3222 2344455443332211 1112223456666652 11225667777778888877766533
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.9e-15 Score=143.45 Aligned_cols=207 Identities=15% Similarity=0.076 Sum_probs=184.7
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 002716 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALAD 683 (889)
Q Consensus 604 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~ 683 (889)
..++..+|.-|+..|++..|...++++++++|++..+|..++.+|...|+.+.|-+.|++|++++|++.
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G----------- 103 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNG----------- 103 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc-----------
Confidence 356788999999999999999999999999999999999999999999999999999999999999862
Q ss_pred cCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccC----cchHHHHHHHHHHHcCC
Q 002716 684 SSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR----HTRAHQGLARVHFLKNN 759 (889)
Q Consensus 684 ~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~----p~~a~~~La~~~~~~g~ 759 (889)
++++|.|..++.+|++++|..+|++|+..- |..++.++|.|..+.|+
T Consensus 104 -----------------------------dVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq 154 (250)
T COG3063 104 -----------------------------DVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQ 154 (250)
T ss_pred -----------------------------chhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCC
Confidence 578899999999999999999999999752 22899999999999999
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Q 002716 760 KTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKA 839 (889)
Q Consensus 760 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p 839 (889)
+ +.|...|+++++++|+++.+...++...++.|+|..|...+++....-+
T Consensus 155 ~------------------------------~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 155 F------------------------------DQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGG 204 (250)
T ss_pred c------------------------------hhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc
Confidence 9 7777777888888899999999999999999999999999998876544
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHH
Q 002716 840 -DLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLEL 880 (889)
Q Consensus 840 -~~~~l~l~a~~~~~~g~~~~A~~~~~~al~l~P~~~~~l~l 880 (889)
+-..+.+...+-...||-+.|-++=.+.-...|...+.-..
T Consensus 205 ~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q~f 246 (250)
T COG3063 205 AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQTF 246 (250)
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHhH
Confidence 44778888999999999999999888888999998876543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-14 Score=149.67 Aligned_cols=169 Identities=14% Similarity=0.044 Sum_probs=131.6
Q ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHH
Q 002716 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQL 557 (889)
Q Consensus 479 ~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~ 557 (889)
+..++.+|..+...|++++|+..+++++..+| +...+..+|.++...|++++|+..+++++..+|.+. .++..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~~~ 104 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG------DVLNN 104 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHH
Confidence 45677788888888888888888888888777 677777788888888888888888888888888777 67777
Q ss_pred HHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Q 002716 558 HMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD--APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA 635 (889)
Q Consensus 558 lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p 635 (889)
+|.++...|++++|..++ .+++... |.....+..+|.++...|++++|...++++++..|
T Consensus 105 ~~~~~~~~g~~~~A~~~~------------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 166 (234)
T TIGR02521 105 YGTFLCQQGKYEQAMQQF------------------EQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP 166 (234)
T ss_pred HHHHHHHcccHHHHHHHH------------------HHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 788888888888886666 6666532 45566777788888888888888888888888888
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh
Q 002716 636 SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (889)
Q Consensus 636 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 671 (889)
.++..+..+|.++...|++++|+..+++++...|..
T Consensus 167 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 202 (234)
T TIGR02521 167 QRPESLLELAELYYLRGQYKDARAYLERYQQTYNQT 202 (234)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 878888888888888888888888888877654443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-15 Score=163.73 Aligned_cols=222 Identities=16% Similarity=0.158 Sum_probs=179.3
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCC
Q 002716 608 FRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQ 686 (889)
Q Consensus 608 ~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~~~ 686 (889)
+..|..+++.|+..+|.-.|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++ ++...||..|...|
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg- 367 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG- 367 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh-
Confidence 5678888899999999999999999999999999999999999898899999999999999999 88888998888888
Q ss_pred CCCcchhhhhhHHHHhcchhhhCchhHHHHHHHH-----------HHHHcCChHHHHHHHHHHHccCcc----hHHHHHH
Q 002716 687 DSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGS-----------VYVDCGQLDLAADCYSNALKIRHT----RAHQGLA 751 (889)
Q Consensus 687 ~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~-----------~y~~~g~~~~A~~~~~~al~~~p~----~a~~~La 751 (889)
.-.+|++++.+-+.....|..++. -......+..-.+.|-.+....|. +++..||
T Consensus 368 ----------~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LG 437 (579)
T KOG1125|consen 368 ----------LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLG 437 (579)
T ss_pred ----------hHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhH
Confidence 556666666654222111111111 001111233445566666666663 8899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHH
Q 002716 752 RVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEY----CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEA 827 (889)
Q Consensus 752 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA 827 (889)
.+|...|+|++|++.|+.+|...|++..+++.+|.- .+..+|+..|++|+++.|..+.+++++|..++..|.|++|
T Consensus 438 VLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA 517 (579)
T KOG1125|consen 438 VLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEA 517 (579)
T ss_pred HHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHH
Confidence 999999999999999999999999999999998883 5789999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCC
Q 002716 828 IAELSRAIAFKAD 840 (889)
Q Consensus 828 ~~~l~kal~~~p~ 840 (889)
+++|-.||.+.+.
T Consensus 518 ~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 518 VKHLLEALSMQRK 530 (579)
T ss_pred HHHHHHHHHhhhc
Confidence 9999999977654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.4e-15 Score=151.50 Aligned_cols=195 Identities=17% Similarity=0.112 Sum_probs=177.0
Q ss_pred cchhHHHHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhc
Q 002716 447 PLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLAL 525 (889)
Q Consensus 447 ~~g~~~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~ 525 (889)
.+|+.+...+.+ ++|+..++++++.+|++..++..+|.++...|++++|++.+++++...| +...+..+|.++...
T Consensus 36 ~la~~~~~~~~~---~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 112 (234)
T TIGR02521 36 QLALGYLEQGDL---EVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQ 112 (234)
T ss_pred HHHHHHHHCCCH---HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence 356677777777 9999999999999999999999999999999999999999999999999 888999999999999
Q ss_pred ccHHHHHHHHHHHHHhC--CCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCC
Q 002716 526 EDYQAALCDVQAILTLS--PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK 603 (889)
Q Consensus 526 g~~~~A~~~~~~al~~~--p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~ 603 (889)
|++++|+..+++++... |... ..+..+|.++...|++++|..++ .++++.+|.+
T Consensus 113 g~~~~A~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~------------------~~~~~~~~~~ 168 (234)
T TIGR02521 113 GKYEQAMQQFEQAIEDPLYPQPA------RSLENAGLCALKAGDFDKAEKYL------------------TRALQIDPQR 168 (234)
T ss_pred ccHHHHHHHHHHHHhccccccch------HHHHHHHHHHHHcCCHHHHHHHH------------------HHHHHhCcCC
Confidence 99999999999999853 2333 57788999999999999998888 9999999999
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 002716 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (889)
Q Consensus 604 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 668 (889)
+..+..+|.++...|++++|...++++++..|.++..+..++.++...|+.++|....+.+....
T Consensus 169 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 169 PESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999989889999999999999999999999888776543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.4e-14 Score=154.81 Aligned_cols=315 Identities=14% Similarity=0.001 Sum_probs=226.3
Q ss_pred cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchh
Q 002716 474 LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL----ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFE 549 (889)
Q Consensus 474 ~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p----~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 549 (889)
.||+.+.+|..+|.++...|+.+.|...+.++....| .......++.++...|++++|...+++++..+|++.
T Consensus 1 ~dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~--- 77 (355)
T cd05804 1 ADPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL--- 77 (355)
T ss_pred CCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH---
Confidence 3899999999999999999999999999998887776 345677889999999999999999999999999998
Q ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Q 002716 550 GRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQL 629 (889)
Q Consensus 550 ~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~ 629 (889)
.++.. +..+...+.+..+.... ...+.......|.....+..+|.++...|++++|...+++
T Consensus 78 ---~a~~~-~~~~~~~~~~~~~~~~~--------------~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 139 (355)
T cd05804 78 ---LALKL-HLGAFGLGDFSGMRDHV--------------ARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARR 139 (355)
T ss_pred ---HHHHH-hHHHHHhcccccCchhH--------------HHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45544 45555555444332222 1112333356677778888999999999999999999999
Q ss_pred HHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhh
Q 002716 630 ARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR 708 (889)
Q Consensus 630 al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~ 708 (889)
+++..|+++.++..+|.+++..|++++|+..+++++...|.. ..
T Consensus 140 al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~----------------------------------- 184 (355)
T cd05804 140 ALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSML----------------------------------- 184 (355)
T ss_pred HHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcch-----------------------------------
Confidence 999999999999999999999999999999999999776542 10
Q ss_pred CchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc-hHHH------HHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHH
Q 002716 709 LRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-RAHQ------GLARVHFLKNNKTTAYEEMTKLIKKARNNASAY 781 (889)
Q Consensus 709 ~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~-~a~~------~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 781 (889)
....+..+|.++...|++++|+..|++++...|. .... .+...+...|....+.. ++.+...
T Consensus 185 --~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~-w~~~~~~-------- 253 (355)
T cd05804 185 --RGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDR-WEDLADY-------- 253 (355)
T ss_pred --hHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHH-HHHHHHH--------
Confidence 0124667888999999999999999999876662 1111 12222223332211111 1111110
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC----------HHHHHHHHHHH
Q 002716 782 EKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKAD----------LHLLHLRAAFH 851 (889)
Q Consensus 782 ~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~----------~~~l~l~a~~~ 851 (889)
...... .+.........+.++...|+.++|...++........ .....+.+..+
T Consensus 254 ---------------~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~ 317 (355)
T cd05804 254 ---------------AAWHFP-DHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYA 317 (355)
T ss_pred ---------------HHhhcC-cccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHH
Confidence 000000 0112233346778888999999999999887653221 12223788888
Q ss_pred HHcCCHHHHHHHHHHHHccC
Q 002716 852 EHTGDVLGALRDCRAALSVD 871 (889)
Q Consensus 852 ~~~g~~~~A~~~~~~al~l~ 871 (889)
...|++++|++.+..++.+-
T Consensus 318 ~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 318 FAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHcCCHHHHHHHHHHHHHHH
Confidence 88999999999999998764
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4e-15 Score=161.29 Aligned_cols=248 Identities=15% Similarity=0.104 Sum_probs=182.1
Q ss_pred hhHHHHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhccc
Q 002716 449 GWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALED 527 (889)
Q Consensus 449 g~~~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~ 527 (889)
|..+.+.|.. .+|.-.|+.|++.||.+..+|..+|.+....++-..||..+.++++++| +.+++..+|..|...|.
T Consensus 292 G~~lm~nG~L---~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 292 GCNLMKNGDL---SEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHhcCCc---hHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 4444444544 7888889999999999999999999999999999999999999999999 89999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccch----HHHHHHHHhcCC--
Q 002716 528 YQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS----LSVIYQMLESDA-- 601 (889)
Q Consensus 528 ~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~s----l~~~~~al~~~p-- 601 (889)
-.+|...+.+-+...|.+..... ....+++..- ++..+... ...+-.+....|
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~-----------a~~~~~~~~~----------~s~~~~~~l~~i~~~fLeaa~~~~~~ 427 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVS-----------AGENEDFENT----------KSFLDSSHLAHIQELFLEAARQLPTK 427 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccc-----------cCccccccCC----------cCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999888776651111 0000000000 00000000 122244555556
Q ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHH
Q 002716 602 PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYA 680 (889)
Q Consensus 602 ~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~ 680 (889)
.++++...||.+|...|+|++|+.+|+.|+...|++...|+.||-.+....+.++|+..|++|+++.|.+ .
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR-------- 499 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVR-------- 499 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeee--------
Confidence 6788888899999999999999999999999999999999999999988888999999999999888887 4
Q ss_pred HHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc------------hHHH
Q 002716 681 LADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT------------RAHQ 748 (889)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~------------~a~~ 748 (889)
+.+|||..+...|.|++|+++|-.||.+.+. .+|.
T Consensus 500 ---------------------------------~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~ 546 (579)
T KOG1125|consen 500 ---------------------------------VRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQ 546 (579)
T ss_pred ---------------------------------eehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHH
Confidence 4556666666677777778777777766533 3555
Q ss_pred HHHHHHHHcCCHH
Q 002716 749 GLARVHFLKNNKT 761 (889)
Q Consensus 749 ~La~~~~~~g~~~ 761 (889)
.|-.++...++.+
T Consensus 547 tLR~als~~~~~D 559 (579)
T KOG1125|consen 547 TLRLALSAMNRSD 559 (579)
T ss_pred HHHHHHHHcCCch
Confidence 5555555556554
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.1e-13 Score=135.01 Aligned_cols=255 Identities=13% Similarity=0.072 Sum_probs=208.3
Q ss_pred hhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHhcccHHHHHHHH
Q 002716 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-----ALECLELRFCFFLALEDYQAALCDV 535 (889)
Q Consensus 461 ~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-----~~~~l~~~a~~~~~~g~~~~A~~~~ 535 (889)
.++|+..|-..++.||...++...+|.++...|..+.||..=+..+..-. ...++..+|.-|...|-++.|...|
T Consensus 51 ~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f 130 (389)
T COG2956 51 PDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIF 130 (389)
T ss_pred cchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 38999999999999999999999999999999999999987665554322 3456778899999999999999999
Q ss_pred HHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCC-----hHHHHHH
Q 002716 536 QAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK-----GVLYFRQ 610 (889)
Q Consensus 536 ~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~-----~~~~~~l 610 (889)
..+.....--. .++..|..+|....+|++|++.. ++..+..+.. +..|..+
T Consensus 131 ~~L~de~efa~------~AlqqLl~IYQ~treW~KAId~A------------------~~L~k~~~q~~~~eIAqfyCEL 186 (389)
T COG2956 131 NQLVDEGEFAE------GALQQLLNIYQATREWEKAIDVA------------------ERLVKLGGQTYRVEIAQFYCEL 186 (389)
T ss_pred HHHhcchhhhH------HHHHHHHHHHHHhhHHHHHHHHH------------------HHHHHcCCccchhHHHHHHHHH
Confidence 98876433333 68888999999999999996666 7777776654 4567889
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCCCC
Q 002716 611 SLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSS 689 (889)
Q Consensus 611 a~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~~~~~~ 689 (889)
+..+....+.+.|+..+.++++.+|+...+-..+|.++...|+++.|++.++.+++.+|++ .
T Consensus 187 Aq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~----------------- 249 (389)
T COG2956 187 AQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLS----------------- 249 (389)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHH-----------------
Confidence 9999999999999999999999999999999999999999999999999999999888887 2
Q ss_pred cchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc-hHHHHHHHHHHHcCCHHHHHHHHH
Q 002716 690 CSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-RAHQGLARVHFLKNNKTTAYEEMT 768 (889)
Q Consensus 690 ~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~-~a~~~La~~~~~~g~~~~A~~~~~ 768 (889)
.+...|-.+|...|+.++.+.++.++.+..+. .+...++..-....-.+.|...+.
T Consensus 250 -----------------------evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~ 306 (389)
T COG2956 250 -----------------------EVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLT 306 (389)
T ss_pred -----------------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHH
Confidence 34555666777788888888888888887777 666667777777777777777777
Q ss_pred HHHHHhccCHH
Q 002716 769 KLIKKARNNAS 779 (889)
Q Consensus 769 ~al~~~~~~~~ 779 (889)
+-+...|....
T Consensus 307 ~Ql~r~Pt~~g 317 (389)
T COG2956 307 RQLRRKPTMRG 317 (389)
T ss_pred HHHhhCCcHHH
Confidence 77777775433
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.5e-12 Score=139.92 Aligned_cols=262 Identities=14% Similarity=-0.004 Sum_probs=189.9
Q ss_pred HHHHhhhHHHhcccHHHHHHHHHHHHHc--CcchhHhhHHHHHhhcCCcHHHHHHHhhhhhccC-------cchhHHHHH
Q 002716 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNA--GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVT-------PLGWMYQER 455 (889)
Q Consensus 385 a~~~lG~~~~~~g~~~eA~~~~~~al~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-------~~g~~~~~~ 455 (889)
+++.-..-.++.|+|....+..++.++- .|..+++..+-.....|+..+|++.....+.... ..|.++...
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 4455555566889999999999999983 4777777778888889999999988776665433 356777777
Q ss_pred hhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHH
Q 002716 456 SLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCD 534 (889)
Q Consensus 456 ~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~ 534 (889)
+.| ++|+.+|..|+.++|+|...|..++.+-.++++++.....-++.++..| ....+...+..+.-.|++..|..+
T Consensus 89 K~Y---~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 89 KKY---DEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhH---HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888 9999999999999999999999999999999999999999999999999 777788888889999999999988
Q ss_pred HHHHHHhCC--CCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHH
Q 002716 535 VQAILTLSP--DYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSL 612 (889)
Q Consensus 535 ~~~al~~~p--~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~ 612 (889)
.+...+..- -.........+......+....|..++|.+.+..++. .--+........|.
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~------------------~i~Dkla~~e~ka~ 227 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK------------------QIVDKLAFEETKAD 227 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh------------------HHHHHHHHhhhHHH
Confidence 887776552 1222222223444445556666777777554411111 01122334456788
Q ss_pred HHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhc
Q 002716 613 LLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGL-RKAEESIQM 667 (889)
Q Consensus 613 ~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~-~~~~~al~~ 667 (889)
++++++++++|...|...+..+|++...+..+-.++..-.+.-+++ ..|...-+.
T Consensus 228 l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~ 283 (700)
T KOG1156|consen 228 LLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK 283 (700)
T ss_pred HHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc
Confidence 8999999999999999999999998887777666664333333444 444444333
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.2e-14 Score=137.88 Aligned_cols=199 Identities=17% Similarity=0.102 Sum_probs=174.1
Q ss_pred chhHHHHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcc
Q 002716 448 LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALE 526 (889)
Q Consensus 448 ~g~~~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g 526 (889)
+|.-|.+.+.+ ..|...+++|++.||+...+|..+|.+|...|+.+.|-+.|++++.++| +.+++.+.|+.+..+|
T Consensus 41 Lal~YL~~gd~---~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 41 LALGYLQQGDY---AQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHCCCH---HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCC
Confidence 44556666666 8888899999999999999999999999999999999999999999999 9999999999999999
Q ss_pred cHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHH
Q 002716 527 DYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL 606 (889)
Q Consensus 527 ~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~ 606 (889)
.+++|...|++++. +|.+.... .++-++|.|..+.|+.+.|..++ +++++.+|+++..
T Consensus 118 ~~~eA~q~F~~Al~-~P~Y~~~s---~t~eN~G~Cal~~gq~~~A~~~l------------------~raL~~dp~~~~~ 175 (250)
T COG3063 118 RPEEAMQQFERALA-DPAYGEPS---DTLENLGLCALKAGQFDQAEEYL------------------KRALELDPQFPPA 175 (250)
T ss_pred ChHHHHHHHHHHHh-CCCCCCcc---hhhhhhHHHHhhcCCchhHHHHH------------------HHHHHhCcCCChH
Confidence 99999999999986 45554222 57889999999999999998888 9999999999999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh
Q 002716 607 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (889)
Q Consensus 607 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 671 (889)
...++..++..|++-.|..+++......+-..+.+.....+....|+-+.|-++=.+.-...|..
T Consensus 176 ~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 176 LLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999988888888888888888888999998888777777777766
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.8e-14 Score=150.75 Aligned_cols=199 Identities=14% Similarity=0.064 Sum_probs=180.1
Q ss_pred hHHHHHHHHhhhcCCCChhhHHHHHHHHHhcc-CHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccH--HHHHHHHHH
Q 002716 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQ-NVEAALAEINRILGFKL-ALECLELRFCFFLALEDY--QAALCDVQA 537 (889)
Q Consensus 462 ~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g-~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~--~~A~~~~~~ 537 (889)
++|+..++++++++|++..+|.+++.++...| ++++|+..+++++..+| +..++..++++....|+. ++++..+.+
T Consensus 54 erAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~k 133 (320)
T PLN02789 54 PRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRK 133 (320)
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHH
Confidence 78899999999999999999999999999998 68999999999999999 899999999999888874 788999999
Q ss_pred HHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHh
Q 002716 538 ILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL 617 (889)
Q Consensus 538 al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~ 617 (889)
++..+|++. .++...+.+....|++++|+.++ .++++.+|.+..+|+.++.+....
T Consensus 134 al~~dpkNy------~AW~~R~w~l~~l~~~~eeL~~~------------------~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 134 ILSLDAKNY------HAWSHRQWVLRTLGGWEDELEYC------------------HQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHhCcccH------HHHHHHHHHHHHhhhHHHHHHHH------------------HHHHHHCCCchhHHHHHHHHHHhc
Confidence 999999999 89999999999999999997777 999999999999999999998776
Q ss_pred ---CCH----HHHHHHHHHHHHcCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHc
Q 002716 618 ---NCP----EAAMRSLQLARQHAASDHERLVYEGWILYD----TSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADS 684 (889)
Q Consensus 618 ---g~~----~~A~~~l~~al~~~p~~~~~~~~lg~~~~~----~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~ 684 (889)
|.+ ++++.+..+++..+|++..+|++++.++.. .++..+|++.+.++++.+|+. .+...++.++...
T Consensus 190 ~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 190 PLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred cccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 333 578888999999999999999999999988 456788999999999988888 7788888888753
|
|
| >KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-15 Score=140.40 Aligned_cols=150 Identities=18% Similarity=0.311 Sum_probs=123.7
Q ss_pred CCCCccccEEEEeC---CeEEEehHHHHhhcChhhhhhhcCCCCCCCcCceEecCCCCCHHHHHHHHHhhccCCCCCCC-
Q 002716 176 SGDQVLRNVVFRIH---EEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVT- 251 (889)
Q Consensus 176 ~~~~~~~Dv~~~v~---~~~~~~hr~vLaa~s~~F~~mf~~~~~e~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~- 251 (889)
.+.+.+||++|.++ ++.|+|||.|||+||++++ |.++-.|. ..+..+. ++.+++|...++|+||++++ +.
T Consensus 61 ~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~dek-se~~~~d--Dad~Ea~~t~iRWIYTDEid-fk~ 134 (280)
T KOG4591|consen 61 LEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDEK-SEELDLD--DADFEAFHTAIRWIYTDEID-FKE 134 (280)
T ss_pred hhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCcc-hhhhccc--ccCHHHHHHhheeeeccccc-ccc
Confidence 46888999999997 5789999999999999986 54443222 2344555 59999999999999999999 64
Q ss_pred -HHHHHHHHHHHHHHcHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCChhhHHHHHHHHhhhccc-------ccChHH
Q 002716 252 -PNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPD-------CLNDER 323 (889)
Q Consensus 252 -~~~~~~ll~~A~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~~l~~~c~~~~~~~l~~-------~l~~~~ 323 (889)
...+.+++.+|++|.++.|++.|++.+.+.+ .++||+.++++|++.+++.|+..|-..+..+-++ .++..-
T Consensus 135 dD~~L~el~e~An~FqLe~Lke~C~k~l~a~l-~V~NCIk~Ye~AEe~n~~qL~n~~~eiIA~~W~dL~~a~FaqMs~aL 213 (280)
T KOG4591|consen 135 DDEFLLELCELANRFQLELLKERCEKGLGALL-HVDNCIKFYEFAEELNARQLMNVAAEIIAGAWDDLGKADFAQMSAAL 213 (280)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh-hHhhHHHHHHHHHHhhHHHHHHHHHHHHHhhccccChHHHHhccHHH
Confidence 4568899999999999999999999999998 8999999999999999999999999999877654 233344
Q ss_pred HHHHhcccc
Q 002716 324 VVEIFSHAN 332 (889)
Q Consensus 324 ~~~ll~~~~ 332 (889)
+.+++.+..
T Consensus 214 LYklId~kT 222 (280)
T KOG4591|consen 214 LYKLIDGKT 222 (280)
T ss_pred HHHHHcCCC
Confidence 555555543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.6e-13 Score=149.79 Aligned_cols=239 Identities=15% Similarity=0.075 Sum_probs=187.0
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhc--------CCCChHHHHHHHHHHHHhCCHHHHH
Q 002716 553 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES--------DAPKGVLYFRQSLLLLRLNCPEAAM 624 (889)
Q Consensus 553 ~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~ 624 (889)
.+...++..|...|++++|+.++ +++++. .|.-......+|.+|..++++++|+
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~------------------k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv 261 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLC------------------KQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAV 261 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHH------------------HHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHH
Confidence 56677999999999999998888 666665 3444455567999999999999999
Q ss_pred HHHHHHHHc--------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------h--HHHHHHHHHHHHcCCC
Q 002716 625 RSLQLARQH--------AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS-------F--EAFFLKAYALADSSQD 687 (889)
Q Consensus 625 ~~l~~al~~--------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~-------~--~a~~~la~~~~~~~~~ 687 (889)
..|++|+.+ +|.-+.++.+||.+|...|++++|..++++|+++... . ..+..++.++...+
T Consensus 262 ~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~-- 339 (508)
T KOG1840|consen 262 NLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMN-- 339 (508)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhc--
Confidence 999999875 4455678999999999999999999999999876321 1 45666777777666
Q ss_pred CCcchhhhhhHHHHhcchhhhCch-----hHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc----------hHHHHHHH
Q 002716 688 SSCSSTVVSLLEDALKCPSDRLRK-----GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT----------RAHQGLAR 752 (889)
Q Consensus 688 ~~~~~~~~~~~~~Al~~~~~~~~~-----~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~----------~a~~~La~ 752 (889)
..+.+...+..+++.+...+.. +..+.+||.+|..+|++++|.+.|++|+.+... ..+..+|.
T Consensus 340 --~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~ 417 (508)
T KOG1840|consen 340 --EYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAE 417 (508)
T ss_pred --chhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHH
Confidence 3334444455555555544322 678899999999999999999999999987633 67778999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHH
Q 002716 753 VHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELS 832 (889)
Q Consensus 753 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~ 832 (889)
.|.+.+++.+|...|.+++.+.+ ..-.-.|+....|.+||.+|..+|++++|+++.+
T Consensus 418 ~~~~~k~~~~a~~l~~~~~~i~~-----------------------~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~ 474 (508)
T KOG1840|consen 418 AYEELKKYEEAEQLFEEAKDIMK-----------------------LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEE 474 (508)
T ss_pred HHHHhcccchHHHHHHHHHHHHH-----------------------HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 99999999989888877765432 1112356778899999999999999999999999
Q ss_pred HHHh
Q 002716 833 RAIA 836 (889)
Q Consensus 833 kal~ 836 (889)
+++.
T Consensus 475 ~~~~ 478 (508)
T KOG1840|consen 475 KVLN 478 (508)
T ss_pred HHHH
Confidence 9884
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-13 Score=154.88 Aligned_cols=259 Identities=17% Similarity=0.119 Sum_probs=200.5
Q ss_pred HhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcC--------CC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 002716 470 KATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGF--------KL-ALECLELRFCFFLALEDYQAALCDVQAILT 540 (889)
Q Consensus 470 ~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~--------~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~ 540 (889)
.....+|....+...+|..|..+|+|++|+..++++++. .| -...+...|.+|..++++.+|+..|+++++
T Consensus 190 ~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~ 269 (508)
T KOG1840|consen 190 GLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALT 269 (508)
T ss_pred hcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 334567888888889999999999999999999999988 44 334445589999999999999999999998
Q ss_pred hC-----CCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHh-cCCCChHHHHHHHHHH
Q 002716 541 LS-----PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE-SDAPKGVLYFRQSLLL 614 (889)
Q Consensus 541 ~~-----p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~-~~p~~~~~~~~la~~~ 614 (889)
+. ++++. .+.++..|+.+|...|++++|..++.. .+..+++... ..|.-+..+.+++.++
T Consensus 270 i~e~~~G~~h~~---va~~l~nLa~ly~~~GKf~EA~~~~e~-----------Al~I~~~~~~~~~~~v~~~l~~~~~~~ 335 (508)
T KOG1840|consen 270 IREEVFGEDHPA---VAATLNNLAVLYYKQGKFAEAEEYCER-----------ALEIYEKLLGASHPEVAAQLSELAAIL 335 (508)
T ss_pred HHHHhcCCCCHH---HHHHHHHHHHHHhccCChHHHHHHHHH-----------HHHHHHHhhccChHHHHHHHHHHHHHH
Confidence 63 34431 125788999999999999999888811 1222222111 1233445678899999
Q ss_pred HHhCCHHHHHHHHHHHHHcC--------CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCC
Q 002716 615 LRLNCPEAAMRSLQLARQHA--------ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQ 686 (889)
Q Consensus 615 ~~~g~~~~A~~~l~~al~~~--------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~ 686 (889)
..++++++|..++++++++. +.-+..+.++|.+|+.+|++++|.+.|++|+.+..... +...
T Consensus 336 ~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~-----~~~~----- 405 (508)
T KOG1840|consen 336 QSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELL-----GKKD----- 405 (508)
T ss_pred HHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc-----cCcC-----
Confidence 99999999999999988753 23356788999999999999999999999996543220 0000
Q ss_pred CCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccC-------cc--hHHHHHHHHHHHc
Q 002716 687 DSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR-------HT--RAHQGLARVHFLK 757 (889)
Q Consensus 687 ~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~-------p~--~a~~~La~~~~~~ 757 (889)
......++++|..|.+++++.+|...|..+..+. |+ ..+.+||.+|..+
T Consensus 406 ----------------------~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~ 463 (508)
T KOG1840|consen 406 ----------------------YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQ 463 (508)
T ss_pred ----------------------hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHc
Confidence 0012578889999999999999999999888764 22 7899999999999
Q ss_pred CCHHHHHHHHHHHHHHh
Q 002716 758 NNKTTAYEEMTKLIKKA 774 (889)
Q Consensus 758 g~~~~A~~~~~~al~~~ 774 (889)
|++++|+++.++++...
T Consensus 464 g~~e~a~~~~~~~~~~~ 480 (508)
T KOG1840|consen 464 GNYEAAEELEEKVLNAR 480 (508)
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 99999999999987544
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-13 Score=148.46 Aligned_cols=215 Identities=10% Similarity=0.034 Sum_probs=174.1
Q ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHhCCCCcchhhhHHHHHHH
Q 002716 481 PYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALE-DYQAALCDVQAILTLSPDYRMFEGRVAASQLH 558 (889)
Q Consensus 481 a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l 558 (889)
++-++-.++...+++++|+..+++++.++| +..++..++.++..+| ++++++..+.+++..+|++. .+++..
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkny------qaW~~R 112 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNY------QIWHHR 112 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcch------HHhHHH
Confidence 343444456677889999999999999999 8899999999999998 68999999999999999999 888888
Q ss_pred HHHHHHhhch--hHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC
Q 002716 559 MLVREHIDNW--TIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS 636 (889)
Q Consensus 559 g~~~~~~~~~--~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 636 (889)
+.+....|+. ++++.++ .++++.+|.+..+|..++.++...|++++|+.++.++++.+|.
T Consensus 113 ~~~l~~l~~~~~~~el~~~------------------~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~ 174 (320)
T PLN02789 113 RWLAEKLGPDAANKELEFT------------------RKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR 174 (320)
T ss_pred HHHHHHcCchhhHHHHHHH------------------HHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC
Confidence 8888887763 4554444 8999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhc---CCH----HHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhh
Q 002716 637 DHERLVYEGWILYDT---SHC----EEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR 708 (889)
Q Consensus 637 ~~~~~~~lg~~~~~~---g~~----~eA~~~~~~al~~~p~~-~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~ 708 (889)
+..+|+.+|.++... |.+ ++++.+..++|.++|++ .+|..++.++...+.
T Consensus 175 N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~---------------------- 232 (320)
T PLN02789 175 NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKE---------------------- 232 (320)
T ss_pred chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCc----------------------
Confidence 999999999988765 323 57888888999999998 777777666554220
Q ss_pred CchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--hHHHHHHHHHHH
Q 002716 709 LRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFL 756 (889)
Q Consensus 709 ~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~ 756 (889)
..++..+|+..+.++++..|. .++..|+.+|..
T Consensus 233 ---------------~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 233 ---------------ALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred ---------------ccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 024455677777777776666 677778888775
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.9e-12 Score=129.64 Aligned_cols=272 Identities=13% Similarity=0.042 Sum_probs=187.0
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHH
Q 002716 483 MYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLV 561 (889)
Q Consensus 483 ~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~ 561 (889)
|..|.-++-..+.++|+..|-.+++.+| ..++...+|.+|...|+.+.|+.+.+.++. .|+.+ +..+..+.+.||.-
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT-~~qr~lAl~qL~~D 116 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLT-FEQRLLALQQLGRD 116 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCc-hHHHHHHHHHHHHH
Confidence 5678888889999999999999999999 899999999999999999999999887664 56665 44444577777777
Q ss_pred HHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcH---
Q 002716 562 REHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH--- 638 (889)
Q Consensus 562 ~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~--- 638 (889)
|...|-++.|+..| .+..+.......+...+-.+|....++++|+..-++..++.+...
T Consensus 117 ym~aGl~DRAE~~f------------------~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e 178 (389)
T COG2956 117 YMAAGLLDRAEDIF------------------NQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE 178 (389)
T ss_pred HHHhhhhhHHHHHH------------------HHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH
Confidence 77777777776666 554444444455666677777777777777777777777666532
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHH
Q 002716 639 --ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALN 716 (889)
Q Consensus 639 --~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~ 716 (889)
.-+..++..+....+.+.|...+.++++.+|+.. .+-.
T Consensus 179 IAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cv----------------------------------------RAsi 218 (389)
T COG2956 179 IAQFYCELAQQALASSDVDRARELLKKALQADKKCV----------------------------------------RASI 218 (389)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccce----------------------------------------ehhh
Confidence 2345566666666667777777777766666551 2334
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHccCcc---hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhcCCHHHH
Q 002716 717 NLGSVYVDCGQLDLAADCYSNALKIRHT---RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELT 793 (889)
Q Consensus 717 ~Lg~~y~~~g~~~~A~~~~~~al~~~p~---~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~A 793 (889)
.+|.++...|+|.+|++.++.+++.+|+ .+...|..+|...|+.++....+.++.+..+.
T Consensus 219 ~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g----------------- 281 (389)
T COG2956 219 ILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG----------------- 281 (389)
T ss_pred hhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC-----------------
Confidence 5566666677777777777777777776 56666777777777776666666666655442
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHH
Q 002716 794 RADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH 845 (889)
Q Consensus 794 ~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~l~ 845 (889)
+.+...++..-....-.+.|...+.+-+..+|+...++
T Consensus 282 --------------~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~ 319 (389)
T COG2956 282 --------------ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFH 319 (389)
T ss_pred --------------ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHH
Confidence 22333344444444445666666666666666653333
|
|
| >PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.6e-16 Score=139.70 Aligned_cols=101 Identities=26% Similarity=0.462 Sum_probs=90.1
Q ss_pred CCCccccEEEEeC-CeEEEehHHHHhhcChhhhhhhcCC-CCCCCcCceEecCCCCCHHHHHHHHHhhccCCCCCCC-HH
Q 002716 177 GDQVLRNVVFRIH-EEKIECDRQKFAALSAPFSAMLNGS-FMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVT-PN 253 (889)
Q Consensus 177 ~~~~~~Dv~~~v~-~~~~~~hr~vLaa~s~~F~~mf~~~-~~e~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~-~~ 253 (889)
+++.++||+|.++ |++|+|||.||+++|+||+.||.++ +.++...+|.+++ +++++|..+++|+|+|++. ++ .+
T Consensus 6 ~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~l~~~Y~~~~~-~~~~~ 82 (111)
T PF00651_consen 6 NSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPD--VSPEAFEAFLEYMYTGEIE-INSDE 82 (111)
T ss_dssp HHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETT--SCHHHHHHHHHHHHHSEEE-EE-TT
T ss_pred cCCCCCCEEEEECCCEEEeechhhhhccchhhhhccccccccccccccccccc--ccccccccccccccCCccc-CCHHH
Confidence 4567899999999 8999999999999999999999998 7777777899895 9999999999999999999 87 99
Q ss_pred HHHHHHHHHHHHcHHHHHHHHHHHHHh
Q 002716 254 LLLEILIFANKFCCERLKDACDRKLAS 280 (889)
Q Consensus 254 ~~~~ll~~A~~~~~~~l~~~~~~~l~~ 280 (889)
++.+++.+|++|.++.|+..|...+..
T Consensus 83 ~~~~ll~lA~~~~~~~L~~~~~~~l~~ 109 (111)
T PF00651_consen 83 NVEELLELADKLQIPELKKACEKFLQE 109 (111)
T ss_dssp THHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence 999999999999999999999887754
|
The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A .... |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1e-11 Score=134.95 Aligned_cols=404 Identities=15% Similarity=0.106 Sum_probs=194.0
Q ss_pred hHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q 002716 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTL 541 (889)
Q Consensus 462 ~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~ 541 (889)
++|....++.+...|++..+....-.++...++|++|+...++-..........+..+.|.++++..++|+..++ ..
T Consensus 29 e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~---~~ 105 (652)
T KOG2376|consen 29 EEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK---GL 105 (652)
T ss_pred HHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh---cc
Confidence 444444455555555555555555555555555555543332221111111111344444455555555554444 22
Q ss_pred CCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccc-----------h-H-HHHHHHHhcCCC-ChHHH
Q 002716 542 SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-----------S-L-SVIYQMLESDAP-KGVLY 607 (889)
Q Consensus 542 ~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~-----------s-l-~~~~~al~~~p~-~~~~~ 607 (889)
++... ....+.+.+.+++|+|++|...|+-..+=.. +|.. + + ..+.+.....|. ..+.+
T Consensus 106 ~~~~~------~ll~L~AQvlYrl~~ydealdiY~~L~kn~~-dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~ 178 (652)
T KOG2376|consen 106 DRLDD------KLLELRAQVLYRLERYDEALDIYQHLAKNNS-DDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELL 178 (652)
T ss_pred cccch------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHH
Confidence 33333 3344444445555555554444422211000 0000 0 0 002333333444 56788
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHc--------CCC--c-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChH
Q 002716 608 FRQSLLLLRLNCPEAAMRSLQLARQH--------AAS--D-----HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (889)
Q Consensus 608 ~~la~~~~~~g~~~~A~~~l~~al~~--------~p~--~-----~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 672 (889)
|+.|.++...|+|.+|++.+++++++ +.+ + ..+...++.++..+|+.++|...|...++.+|.++
T Consensus 179 yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~ 258 (652)
T KOG2376|consen 179 YNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADE 258 (652)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999433 111 1 12567889999999999999999999999888772
Q ss_pred -HHHHHHHHHHHcCCCCCcch---------hhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccC
Q 002716 673 -AFFLKAYALADSSQDSSCSS---------TVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR 742 (889)
Q Consensus 673 -a~~~la~~~~~~~~~~~~~~---------~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~ 742 (889)
......+.+.....+..-.+ ......+.++..+... ++...+.|.+...+..+.-+++.+.....-...
T Consensus 259 ~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~-qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~ 337 (652)
T KOG2376|consen 259 PSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKK-QKQAIYRNNALLALFTNKMDQVRELSASLPGMS 337 (652)
T ss_pred hHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccC
Confidence 22111111111111111111 1111111111111111 113455555655555566555555444443344
Q ss_pred cc---hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccC-HHHHHHHHh----cCCHHHHHHHHHH--------HHhcCCC
Q 002716 743 HT---RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNN-ASAYEKRSE----YCDRELTRADLEM--------VTQLDPL 806 (889)
Q Consensus 743 p~---~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~----~~~~~~A~~~l~~--------al~l~p~ 806 (889)
|. .++.. .........+.+|...+....+..|.+ ......+.. .|++..|+..+.. ..+.. .
T Consensus 338 p~~~~~~ll~-~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~-~ 415 (652)
T KOG2376|consen 338 PESLFPILLQ-EATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAK-H 415 (652)
T ss_pred chHHHHHHHH-HHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhc-c
Confidence 44 11111 111122224566666666666666644 122222222 1666666666662 22211 1
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-------CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q 002716 807 RVYPYRYRAAVLMDSHKENEAIAELSRAIAF-------KADL-HLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEML 878 (889)
Q Consensus 807 ~~~~~~~la~~~~~~g~~~eA~~~l~kal~~-------~p~~-~~l~l~a~~~~~~g~~~~A~~~~~~al~l~P~~~~~l 878 (889)
.+.+.-.+-..+.+.++.+.|...+.+|+.. .+.. ..+...+.+..+-|+-++|...+++.++.+|++.+++
T Consensus 416 ~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l 495 (652)
T KOG2376|consen 416 LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLL 495 (652)
T ss_pred ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHH
Confidence 1223333444555555555555555555432 1111 1222445555555777777777777777777776655
|
|
| >KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-14 Score=149.84 Aligned_cols=154 Identities=14% Similarity=0.149 Sum_probs=136.8
Q ss_pred CCCCCCCccCccc--CCCCccccEEEEeCCeEEEehHHHHhhcChhhhhhhcCCCCCCCcCc--eEecCCCCCHHHHHHH
Q 002716 163 DINVAGSHETVSM--SGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCED--IDLSENNISPSGLRII 238 (889)
Q Consensus 163 ~~~~~~~~~~~~~--~~~~~~~Dv~~~v~~~~~~~hr~vLaa~s~~F~~mf~~~~~e~~~~~--i~l~~~~~~~~~~~~l 238 (889)
..|...+...++. ..++.-|||++..-|++++.||..| ..|+||++||+|.|+|+.+.. ++|+|+.|+..+|..+
T Consensus 49 r~~ll~t~kyiyq~lf~q~enSDv~l~alg~eWrlHk~yL-~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a 127 (488)
T KOG4682|consen 49 RKKLLQTQKYIYQNLFLQGENSDVILEALGFEWRLHKPYL-FQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVA 127 (488)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcceehhhccceeeeeeeee-eccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHH
Confidence 3343344444422 4688889999999999999999999 799999999999999999964 4567788999999999
Q ss_pred HHhhccCCCCCCCHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCChhhHHHHHHHHhhhcccc
Q 002716 239 SDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDC 318 (889)
Q Consensus 239 l~~~Yt~~~~~~~~~~~~~ll~~A~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~~l~~~c~~~~~~~l~~~ 318 (889)
+.-+|.++|. |+.+.|..+|++|..+..+.|.+.|...+...+ ++++++.+++.+..|+...+...|+++++.|+-..
T Consensus 128 ~gsLY~dEve-I~l~dv~gvlAaA~~lqldgl~qrC~evMie~l-spkta~~yYea~ckYgle~vk~kc~ewl~~nl~~i 205 (488)
T KOG4682|consen 128 FGSLYRDEVE-IKLSDVVGVLAAACLLQLDGLIQRCGEVMIETL-SPKTACGYYEAACKYGLESVKKKCLEWLLNNLMTI 205 (488)
T ss_pred Hhhhhhhhee-ccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-ChhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhHhh
Confidence 9999999999 999999999999999999999999999988888 89999999999999999999999999999998554
Q ss_pred c
Q 002716 319 L 319 (889)
Q Consensus 319 l 319 (889)
.
T Consensus 206 ~ 206 (488)
T KOG4682|consen 206 Q 206 (488)
T ss_pred h
Confidence 4
|
|
| >smart00225 BTB Broad-Complex, Tramtrack and Bric a brac | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-14 Score=126.31 Aligned_cols=90 Identities=28% Similarity=0.471 Sum_probs=85.4
Q ss_pred cEEEEeCCeEEEehHHHHhhcChhhhhhhcCCCCCCCcCceEecCCCCCHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH
Q 002716 183 NVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFA 262 (889)
Q Consensus 183 Dv~~~v~~~~~~~hr~vLaa~s~~F~~mf~~~~~e~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~ll~~A 262 (889)
||+|.++|++|++||.+|+++|+||++||.+++.|+....|.+++ +++.+|+.+++|+||+++. ++.+++.+++.+|
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~--~~~~~f~~~l~~ly~~~~~-~~~~~~~~l~~~a 77 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDD--VSPEDFRALLEFLYTGKLD-LPEENVEELLELA 77 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecC--CCHHHHHHHHHeecCceee-cCHHHHHHHHHHH
Confidence 799999999999999999999999999999999888888999995 9999999999999999999 9999999999999
Q ss_pred HHHcHHHHHHHHH
Q 002716 263 NKFCCERLKDACD 275 (889)
Q Consensus 263 ~~~~~~~l~~~~~ 275 (889)
++|.++.|...|+
T Consensus 78 ~~~~~~~l~~~c~ 90 (90)
T smart00225 78 DYLQIPGLVELCE 90 (90)
T ss_pred HHHCcHHHHhhhC
Confidence 9999999998873
|
Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.9e-09 Score=114.16 Aligned_cols=463 Identities=12% Similarity=0.048 Sum_probs=304.3
Q ss_pred HHHHHhhhHHHhcccHHHHHHHHHHHHHcCcchh--HhhHHHHHhhcCCcHHHHHHHhhhhhccCcchhH-----HHHHh
Q 002716 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYS--IAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWM-----YQERS 456 (889)
Q Consensus 384 ~a~~~lG~~~~~~g~~~eA~~~~~~al~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~-----~~~~~ 456 (889)
..|...|.--..++++..|...|++|+..++... +...|..-.+....--|...++..++..+..... |.+.
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE- 152 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEE- 152 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHH-
Confidence 3566777778899999999999999999875543 2333444444444555666666666665543322 2221
Q ss_pred hcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHH
Q 002716 457 LYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQ 536 (889)
Q Consensus 457 ~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~ 536 (889)
..++...|-+.|++-++..|+. .+|..--..-.+.+.++.|...|++-+-..|....+...+..-...|+...|...|+
T Consensus 153 ~LgNi~gaRqiferW~~w~P~e-qaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vye 231 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEWEPDE-QAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYE 231 (677)
T ss_pred HhcccHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 1223377888888888888864 466666666777888999999999988888888888888888888999999999999
Q ss_pred HHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCC--hHHHHHHHHHH
Q 002716 537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK--GVLYFRQSLLL 614 (889)
Q Consensus 537 ~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~--~~~~~~la~~~ 614 (889)
.++..-.++.... ......+..-..++.++.|.-.+ +-++..-|.+ ..++...-..-
T Consensus 232 rAie~~~~d~~~e---~lfvaFA~fEe~qkE~ERar~iy------------------kyAld~~pk~raeeL~k~~~~fE 290 (677)
T KOG1915|consen 232 RAIEFLGDDEEAE---ILFVAFAEFEERQKEYERARFIY------------------KYALDHIPKGRAEELYKKYTAFE 290 (677)
T ss_pred HHHHHhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHhcCcccHHHHHHHHHHHH
Confidence 9988765544110 11112233334455566664444 6677777766 23333222222
Q ss_pred HHhCCH---HHHHHH-----HHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh---HHH-----HHHH
Q 002716 615 LRLNCP---EAAMRS-----LQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF---EAF-----FLKA 678 (889)
Q Consensus 615 ~~~g~~---~~A~~~-----l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~a~-----~~la 678 (889)
-+-|+. +.++-. |+..+..+|.|.++|+..-.+....|+.+.-.+.|++||..-|.. ..| ..+-
T Consensus 291 KqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWin 370 (677)
T KOG1915|consen 291 KQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWIN 370 (677)
T ss_pred HHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHH
Confidence 233443 333322 677788888888888888888888888888888888888766654 111 1222
Q ss_pred HHHHHcCCCCCcchhhhhhHHHHhcchhhh-CchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc-hHHHHHHHHHHH
Q 002716 679 YALADSSQDSSCSSTVVSLLEDALKCPSDR-LRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-RAHQGLARVHFL 756 (889)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~-~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~-~a~~~La~~~~~ 756 (889)
+++...- .........+.+..++++.... ..-+..|...+.....+.+...|.+.+-.|+...|. ...-+.-.+-.+
T Consensus 371 YalyeEl-e~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElq 449 (677)
T KOG1915|consen 371 YALYEEL-EAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQ 449 (677)
T ss_pred HHHHHHH-HhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 2222210 1111222222333333322211 111667777777778888889999999999888888 566666777788
Q ss_pred cCCHHHHHHHHHHHHHHhccCHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCChHHHHHHHH--HHHhCCCHHHHHHH
Q 002716 757 KNNKTTAYEEMTKLIKKARNNASAYEKRSEY----CDRELTRADLEMVTQLDPLRVYPYRYRAA--VLMDSHKENEAIAE 830 (889)
Q Consensus 757 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~--~~~~~g~~~eA~~~ 830 (889)
.++++...++|++.++-.|.+..++...+.+ |+.+.|...|+-|++....+..-+...+. .-...|.++.|...
T Consensus 450 L~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~L 529 (677)
T KOG1915|consen 450 LREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARAL 529 (677)
T ss_pred HhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHH
Confidence 8889999999999999999888887777764 88899999998888875555544444333 34467888899999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHH-----HcC-----------CHHHHHHHHHHHHcc
Q 002716 831 LSRAIAFKADLHLLHLRAAFHE-----HTG-----------DVLGALRDCRAALSV 870 (889)
Q Consensus 831 l~kal~~~p~~~~l~l~a~~~~-----~~g-----------~~~~A~~~~~~al~l 870 (889)
|++.++..+...++...|.+-. +.| ....|.+.|++|...
T Consensus 530 YerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~ 585 (677)
T KOG1915|consen 530 YERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTY 585 (677)
T ss_pred HHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHH
Confidence 9999888777655554444433 334 566788888877654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.6e-12 Score=133.15 Aligned_cols=176 Identities=10% Similarity=-0.041 Sum_probs=151.0
Q ss_pred hcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CH---HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcch
Q 002716 473 ALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-AL---ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMF 548 (889)
Q Consensus 473 ~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~---~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 548 (889)
..++..+..++.+|..++..|++++|+..+++++...| ++ .+++.+|.++...|++++|+..|+++++.+|+++..
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 45567788999999999999999999999999999998 43 578899999999999999999999999999988822
Q ss_pred hhhHHHHHHHHHHHHHh--------hchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHH-------------
Q 002716 549 EGRVAASQLHMLVREHI--------DNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLY------------- 607 (889)
Q Consensus 549 ~~~~~a~~~lg~~~~~~--------~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~------------- 607 (889)
. .+++.+|.++... |++++|...+ ++++..+|.+...+
T Consensus 107 ~---~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~------------------~~~~~~~p~~~~~~~a~~~~~~~~~~~ 165 (235)
T TIGR03302 107 D---YAYYLRGLSNYNQIDRVDRDQTAAREAFEAF------------------QELIRRYPNSEYAPDAKKRMDYLRNRL 165 (235)
T ss_pred H---HHHHHHHHHHHHhcccccCCHHHHHHHHHHH------------------HHHHHHCCCChhHHHHHHHHHHHHHHH
Confidence 1 2688889998876 8899997777 88888888876442
Q ss_pred ----HHHHHHHHHhCCHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 002716 608 ----FRQSLLLLRLNCPEAAMRSLQLARQHAAS---DHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 669 (889)
Q Consensus 608 ----~~la~~~~~~g~~~~A~~~l~~al~~~p~---~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p 669 (889)
..+|..|...|++.+|+..++++++..|+ .+++++.+|.++...|++++|...++......|
T Consensus 166 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 166 AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 36788899999999999999999999765 468999999999999999999998887765444
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.47 E-value=4e-11 Score=133.63 Aligned_cols=284 Identities=13% Similarity=0.013 Sum_probs=198.7
Q ss_pred hHHHHHHHHhhhcCCCC---hhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHH
Q 002716 462 DKRWEDLDKATALDPTL---SYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQA 537 (889)
Q Consensus 462 ~~A~~~~~~al~~dp~~---~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~ 537 (889)
+.+...+.++.+..|.+ ......+|..+...|++++|++.+++++...| +...+.. +..++..|++..+.....+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~ 101 (355)
T cd05804 23 PAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVAR 101 (355)
T ss_pred chHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHH
Confidence 44444555555555433 44566788999999999999999999999999 6666554 5566665555544444444
Q ss_pred HH----HhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHH
Q 002716 538 IL----TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLL 613 (889)
Q Consensus 538 al----~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~ 613 (889)
++ ..+|... .+...+|.++...|++++|...+ +++++.+|.++.++..+|.+
T Consensus 102 ~l~~~~~~~~~~~------~~~~~~a~~~~~~G~~~~A~~~~------------------~~al~~~p~~~~~~~~la~i 157 (355)
T cd05804 102 VLPLWAPENPDYW------YLLGMLAFGLEEAGQYDRAEEAA------------------RRALELNPDDAWAVHAVAHV 157 (355)
T ss_pred HHhccCcCCCCcH------HHHHHHHHHHHHcCCHHHHHHHH------------------HHHHhhCCCCcHHHHHHHHH
Confidence 44 3344444 56778889999999999997777 99999999999999999999
Q ss_pred HHHhCCHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh--HHHH-HH---HHHHHH
Q 002716 614 LLRLNCPEAAMRSLQLARQHAASDH----ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF--EAFF-LK---AYALAD 683 (889)
Q Consensus 614 ~~~~g~~~~A~~~l~~al~~~p~~~----~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~--~a~~-~l---a~~~~~ 683 (889)
+...|++++|+..+++++...|.++ ..+..+|.++...|++++|+..|++++...|.. .... .. ...+..
T Consensus 158 ~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 237 (355)
T cd05804 158 LEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLEL 237 (355)
T ss_pred HHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHh
Confidence 9999999999999999999877433 345679999999999999999999998776622 1111 11 111112
Q ss_pred cCCCCCcchhhhhhHHHHhcchhhh-Cch--hHHHHHHHHHHHHcCChHHHHHHHHHHHccC-c---c-------hHHHH
Q 002716 684 SSQDSSCSSTVVSLLEDALKCPSDR-LRK--GQALNNLGSVYVDCGQLDLAADCYSNALKIR-H---T-------RAHQG 749 (889)
Q Consensus 684 ~~~~~~~~~~~~~~~~~Al~~~~~~-~~~--~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~-p---~-------~a~~~ 749 (889)
.+. ......++.+....... ... .......+.++...|+.++|...++...... . . .....
T Consensus 238 ~g~-----~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l 312 (355)
T cd05804 238 AGH-----VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLA 312 (355)
T ss_pred cCC-----CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHH
Confidence 221 11222333332222111 001 1222357778888999999998887765422 1 1 55666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhc
Q 002716 750 LARVHFLKNNKTTAYEEMTKLIKKAR 775 (889)
Q Consensus 750 La~~~~~~g~~~~A~~~~~~al~~~~ 775 (889)
.|.++...|++++|...+..++....
T Consensus 313 ~A~~~~~~g~~~~A~~~L~~al~~a~ 338 (355)
T cd05804 313 EALYAFAEGNYATALELLGPVRDDLA 338 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 88899999999999999999987764
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.6e-14 Score=156.42 Aligned_cols=142 Identities=18% Similarity=0.294 Sum_probs=123.2
Q ss_pred CCCccccEEEEe-CCeEEEehHHHHhhcChhhhhhhcCCCCCCCcCceEecCCCCCHHHHHHHHHhhc-cCCCCCC----
Q 002716 177 GDQVLRNVVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSV-TGSLNGV---- 250 (889)
Q Consensus 177 ~~~~~~Dv~~~v-~~~~~~~hr~vLaa~s~~F~~mf~~~~~e~~~~~i~l~~~~~~~~~~~~ll~~~Y-t~~~~~~---- 250 (889)
+.+...|+.++. +|+.++|||++|.+|++||..||...|.|+....+... .++.+-|..+|+|+| ++++..+
T Consensus 706 dh~e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~--p~~~e~m~ivLdylYs~d~~~~~k~~~ 783 (1267)
T KOG0783|consen 706 DHEETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLS--PLTVEHMSIVLDYLYSDDKVELFKDLK 783 (1267)
T ss_pred CCccceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecC--cchHHHHHHHHHHHHccchHHHHhccc
Confidence 445555777666 88999999999999999999999999999988666655 488999999999999 4554422
Q ss_pred CHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCChhhHHHHHHHHhhhcccccCh
Q 002716 251 TPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLND 321 (889)
Q Consensus 251 ~~~~~~~ll~~A~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~~l~~~c~~~~~~~l~~~l~~ 321 (889)
..+.+.++|..||.|-+..||+.|++.|...+ +..++-.++++|..|+|..|...|++|+..|+...|..
T Consensus 784 ~~dF~~~il~iaDqlli~~Lk~Ice~~ll~kl-~lk~~~~llefaamY~ak~L~~~C~dfic~N~~~~Lea 853 (1267)
T KOG0783|consen 784 ESDFMFEILSIADQLLILELKSICEQSLLRKL-NLKTLPTLLEFAAMYHAKELYSRCIDFICHNIEFFLEA 853 (1267)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHh-cccchHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHh
Confidence 35679999999999999999999999999988 88999999999999999999999999999998766633
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.9e-12 Score=131.48 Aligned_cols=181 Identities=10% Similarity=-0.047 Sum_probs=151.0
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCCh---HHHHHHHHHHHHhCCHHHHHHHHHH
Q 002716 553 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG---VLYFRQSLLLLRLNCPEAAMRSLQL 629 (889)
Q Consensus 553 ~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~l~~ 629 (889)
..++.+|..+...|++++|...+ ++++...|.++ .+++.+|.++...|++++|+..|++
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~------------------~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~ 95 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYF------------------EALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADR 95 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH------------------HHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 68889999999999999997777 99999999876 5789999999999999999999999
Q ss_pred HHHcCCCcHH---HHHHHHHHHHhc--------CCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCCCCcchhhhhh
Q 002716 630 ARQHAASDHE---RLVYEGWILYDT--------SHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSL 697 (889)
Q Consensus 630 al~~~p~~~~---~~~~lg~~~~~~--------g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~~~~~~~~~~~~~~ 697 (889)
+++..|+++. +++.+|.++... |++++|++.|++++...|++ .++..+..+..... .
T Consensus 96 ~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~-----------~ 164 (235)
T TIGR03302 96 FIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN-----------R 164 (235)
T ss_pred HHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH-----------H
Confidence 9999998766 789999999876 88999999999999999998 33322221111100 0
Q ss_pred HHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc-----hHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002716 698 LEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-----RAHQGLARVHFLKNNKTTAYEEMTKLIK 772 (889)
Q Consensus 698 ~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~-----~a~~~La~~~~~~g~~~~A~~~~~~al~ 772 (889)
.......+|..|...|++.+|+..|+++++..|+ .++..+|.++...|++++|...++.+..
T Consensus 165 -------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 165 -------------LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred -------------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 0123457899999999999999999999998775 7899999999999999999998888766
Q ss_pred Hhc
Q 002716 773 KAR 775 (889)
Q Consensus 773 ~~~ 775 (889)
..|
T Consensus 232 ~~~ 234 (235)
T TIGR03302 232 NYP 234 (235)
T ss_pred hCC
Confidence 554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.43 E-value=5e-10 Score=114.39 Aligned_cols=264 Identities=14% Similarity=0.023 Sum_probs=170.6
Q ss_pred hHHHHHHHHhhhcCCCCh-hhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 002716 462 DKRWEDLDKATALDPTLS-YPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAIL 539 (889)
Q Consensus 462 ~~A~~~~~~al~~dp~~~-~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al 539 (889)
..|+..++-....+.... ..-..+|.+++..|+|++|+..|.-+.+.+. +.+....++.+++.+|.|.+|...-.+
T Consensus 39 tGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~k-- 116 (557)
T KOG3785|consen 39 TGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEK-- 116 (557)
T ss_pred hhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhh--
Confidence 666666666655544333 4456689999999999999999998887655 788888899999999999999766544
Q ss_pred HhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCC
Q 002716 540 TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNC 619 (889)
Q Consensus 540 ~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~ 619 (889)
.|+.+ -...++-.+..+.++-.+- + .+++.++-. .+-...+|.++...-.
T Consensus 117 --a~k~p------L~~RLlfhlahklndEk~~---~----------------~fh~~LqD~---~EdqLSLAsvhYmR~H 166 (557)
T KOG3785|consen 117 --APKTP------LCIRLLFHLAHKLNDEKRI---L----------------TFHSSLQDT---LEDQLSLASVHYMRMH 166 (557)
T ss_pred --CCCCh------HHHHHHHHHHHHhCcHHHH---H----------------HHHHHHhhh---HHHHHhHHHHHHHHHH
Confidence 46666 2333444444555542221 1 112222211 1223456666666777
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCCCCcchhhhhhH
Q 002716 620 PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLL 698 (889)
Q Consensus 620 ~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~~~~~~~~~~~~~~~ 698 (889)
|.+|+..|.+.+..+|+....-.+++.+|++..-++-+.+.+.--++..|+. -+..+++..+...-+.....++.....
T Consensus 167 YQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~la 246 (557)
T KOG3785|consen 167 YQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELA 246 (557)
T ss_pred HHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHH
Confidence 8899999999998888887788888999999988888888888888888888 666667666655432222111111111
Q ss_pred ------------------------HHHhcchhhhCch-hHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--hHHHHHH
Q 002716 699 ------------------------EDALKCPSDRLRK-GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLA 751 (889)
Q Consensus 699 ------------------------~~Al~~~~~~~~~-~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La 751 (889)
+.|++.+....+- +++..+|...|..+++..+|....+. .+|. .-+..-|
T Consensus 247 dN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKg 323 (557)
T KOG3785|consen 247 DNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKG 323 (557)
T ss_pred hcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh---cCCCChHHHHHHH
Confidence 1111111111111 67888888899999999999887654 4455 3333445
Q ss_pred HHHHHcCCH
Q 002716 752 RVHFLKNNK 760 (889)
Q Consensus 752 ~~~~~~g~~ 760 (889)
.++...|+-
T Consensus 324 vv~aalGQe 332 (557)
T KOG3785|consen 324 VVFAALGQE 332 (557)
T ss_pred HHHHHhhhh
Confidence 555555554
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.1e-10 Score=123.60 Aligned_cols=307 Identities=18% Similarity=0.195 Sum_probs=203.4
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHH
Q 002716 515 LELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 594 (889)
Q Consensus 515 l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~ 594 (889)
++.--..+...|+|++|.....+++...|++. .+.+.--.+..+.++|++|+...
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~------~a~~cKvValIq~~ky~~ALk~i------------------- 69 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIVPDDE------DAIRCKVVALIQLDKYEDALKLI------------------- 69 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcCCCcH------hhHhhhHhhhhhhhHHHHHHHHH-------------------
Confidence 33334556778899999999999999988888 67777777888888999885333
Q ss_pred HHHhcCCC---ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh
Q 002716 595 QMLESDAP---KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (889)
Q Consensus 595 ~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 671 (889)
+.++. .....+..+.+.+++|..++|+..++ ..++.+...+...|.++|++|+|++|+..|+..++-+.+.
T Consensus 70 ---kk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd 143 (652)
T KOG2376|consen 70 ---KKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDD 143 (652)
T ss_pred ---HhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCch
Confidence 22221 11122688999999999999999988 4556667788889999999999999999999988766555
Q ss_pred -HHH--HHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhC-chhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc---
Q 002716 672 -EAF--FLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRL-RKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--- 744 (889)
Q Consensus 672 -~a~--~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~-~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--- 744 (889)
+.. .++..+-..+. . .+ ++...... ..-+.++|.+.++...|+|.+|++.+++|+++...
T Consensus 144 ~d~~~r~nl~a~~a~l~---------~-~~---~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~ 210 (652)
T KOG2376|consen 144 QDEERRANLLAVAAALQ---------V-QL---LQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLE 210 (652)
T ss_pred HHHHHHHHHHHHHHhhh---------H-HH---HHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhc
Confidence 221 11111111110 0 01 11111111 12567889999999999999999999999543211
Q ss_pred --------------hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHH----HHHHh------c-------------
Q 002716 745 --------------RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAY----EKRSE------Y------------- 787 (889)
Q Consensus 745 --------------~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~------~------------- 787 (889)
.....|+.++..+|+.++|...|...+..+|.+.... +++.. |
T Consensus 211 ~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~ 290 (652)
T KOG2376|consen 211 DEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQV 290 (652)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHH
Confidence 4666789999999999999999999999887322110 00000 0
Q ss_pred ------------------------------CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 002716 788 ------------------------------CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAF 837 (889)
Q Consensus 788 ------------------------------~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~ 837 (889)
+..+.+.+.........|.....-........+...+.+|+..+....+-
T Consensus 291 ~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~ 370 (652)
T KOG2376|consen 291 FKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG 370 (652)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc
Confidence 11111111111111122333333334444555555788999999998888
Q ss_pred CCCH--HHHHHHHHHHHHcCCHHHHHHHHH
Q 002716 838 KADL--HLLHLRAAFHEHTGDVLGALRDCR 865 (889)
Q Consensus 838 ~p~~--~~l~l~a~~~~~~g~~~~A~~~~~ 865 (889)
.|.. .++.+++.+...+|+++.|++.+.
T Consensus 371 ~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 371 HPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred CCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 8886 444578888888999999999999
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.1e-09 Score=112.62 Aligned_cols=291 Identities=14% Similarity=-0.020 Sum_probs=196.6
Q ss_pred HHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHh
Q 002716 519 FCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE 598 (889)
Q Consensus 519 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~ 598 (889)
|..-+..|+|.+|++...+.-+..+... -++..-+....+.|+.+.|..|+ .++-+
T Consensus 91 gl~~l~eG~~~qAEkl~~rnae~~e~p~------l~~l~aA~AA~qrgd~~~an~yL------------------~eaae 146 (400)
T COG3071 91 GLLKLFEGDFQQAEKLLRRNAEHGEQPV------LAYLLAAEAAQQRGDEDRANRYL------------------AEAAE 146 (400)
T ss_pred HHHHHhcCcHHHHHHHHHHhhhcCcchH------HHHHHHHHHHHhcccHHHHHHHH------------------HHHhc
Confidence 5555667888888888777655554444 44555566777788888887777 66666
Q ss_pred cCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh----HH
Q 002716 599 SDAP-KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF----EA 673 (889)
Q Consensus 599 ~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~----~a 673 (889)
..++ ...+....+.++...|++..|.....++++..|.+++++.....+|...|++.+......+.-+..--. .-
T Consensus 147 ~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~ 226 (400)
T COG3071 147 LAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR 226 (400)
T ss_pred cCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH
Confidence 6333 334566777888888888888888888888888888888888888888888888887777655432111 11
Q ss_pred HHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHH---HHccCcchHHHHH
Q 002716 674 FFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSN---ALKIRHTRAHQGL 750 (889)
Q Consensus 674 ~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~---al~~~p~~a~~~L 750 (889)
+-+.+ +..+-.-....+..+.=..+++. .++.+| .....+
T Consensus 227 le~~a------------------------------------~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p-~l~~~~ 269 (400)
T COG3071 227 LEQQA------------------------------------WEGLLQQARDDNGSEGLKTWWKNQPRKLRNDP-ELVVAY 269 (400)
T ss_pred HHHHH------------------------------------HHHHHHHHhccccchHHHHHHHhccHHhhcCh-hHHHHH
Confidence 11111 11110000000111111111111 111111 333445
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhccCH-HHHHHHHhcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHH
Q 002716 751 ARVHFLKNNKTTAYEEMTKLIKKARNNA-SAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIA 829 (889)
Q Consensus 751 a~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~ 829 (889)
+.-+...|+.++|.+....+++..-+.. ..+..+...++...-++..++.+...|+++..+..||.++.+.+.+.+|..
T Consensus 270 a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~ 349 (400)
T COG3071 270 AERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASE 349 (400)
T ss_pred HHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHH
Confidence 5555666666666666666665554322 112222223677888889999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 002716 830 ELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSV 870 (889)
Q Consensus 830 ~l~kal~~~p~~~~l~l~a~~~~~~g~~~~A~~~~~~al~l 870 (889)
+|+.++...|+...+..++..+.++|+..+|.+.++.++.+
T Consensus 350 ~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 350 ALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999988889999999999999999999999854
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.4e-09 Score=111.20 Aligned_cols=403 Identities=13% Similarity=0.036 Sum_probs=237.4
Q ss_pred HHhcccHHHHHHHHHHHHHcCcc---hhHhhHHHHHhhcCCcHHHHHHHhhhhhccCcchhHHHHHhhcCChhHHHHHHH
Q 002716 393 RLLRKEYDEAEHLFEAAVNAGHI---YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLD 469 (889)
Q Consensus 393 ~~~~g~~~eA~~~~~~al~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~ 469 (889)
++.+.||..|+..++-.+..+.. .....+|.+++..|++ ++|+..|.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY------------------------------~~Al~~Y~ 81 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDY------------------------------EEALNVYT 81 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccH------------------------------HHHHHHHH
Confidence 45677888888888777654422 1223355555555554 44455555
Q ss_pred HhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcch
Q 002716 470 KATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMF 548 (889)
Q Consensus 470 ~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 548 (889)
.+.+.+.-+...+.++|.+++-.|.|.+|.....+ .| ++-+..++-.+..+.||-++-... .+-|.-..
T Consensus 82 ~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~k----a~k~pL~~RLlfhlahklndEk~~~~f-h~~LqD~~----- 151 (557)
T KOG3785|consen 82 FLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEK----APKTPLCIRLLFHLAHKLNDEKRILTF-HSSLQDTL----- 151 (557)
T ss_pred HHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhh----CCCChHHHHHHHHHHHHhCcHHHHHHH-HHHHhhhH-----
Confidence 55554444555666777777777777777554443 23 444444444555555554443322 22222111
Q ss_pred hhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHH
Q 002716 549 EGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQ 628 (889)
Q Consensus 549 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~ 628 (889)
+-...|+.+.+..-.|.+|+..+ .+.+..+|+...+...+|.+|.++.-++-+.+.+.
T Consensus 152 ----EdqLSLAsvhYmR~HYQeAIdvY------------------krvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~ 209 (557)
T KOG3785|consen 152 ----EDQLSLASVHYMRMHYQEAIDVY------------------KRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLK 209 (557)
T ss_pred ----HHHHhHHHHHHHHHHHHHHHHHH------------------HHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHH
Confidence 11223444555555566663333 66666666666666666666666666666666666
Q ss_pred HHHHcCCCcHHHHHHHHHHHHhc--CCH---------------------------------HHHHHHHHHHHhcCCChHH
Q 002716 629 LARQHAASDHERLVYEGWILYDT--SHC---------------------------------EEGLRKAEESIQMKRSFEA 673 (889)
Q Consensus 629 ~al~~~p~~~~~~~~lg~~~~~~--g~~---------------------------------~eA~~~~~~al~~~p~~~a 673 (889)
-.+...|+.+-+.+.++..+++. |+. +.|++.+--.++.-| ++
T Consensus 210 vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IP--EA 287 (557)
T KOG3785|consen 210 VYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIP--EA 287 (557)
T ss_pred HHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhCh--Hh
Confidence 66666666666655555544442 221 122222222221111 56
Q ss_pred HHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhh-CchhHHHHHHHHHHHHcCChHHHHHHHHHHHcc-------C---
Q 002716 674 FFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR-LRKGQALNNLGSVYVDCGQLDLAADCYSNALKI-------R--- 742 (889)
Q Consensus 674 ~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~-~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~-------~--- 742 (889)
..++..-+..++ ..++|....++. +-.+.-|...|.+....|+-....+.++-|-+. .
T Consensus 288 RlNL~iYyL~q~-----------dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ec 356 (557)
T KOG3785|consen 288 RLNLIIYYLNQN-----------DVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALEC 356 (557)
T ss_pred hhhheeeecccc-----------cHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccccc
Confidence 677777777777 788888777765 333566777788888877765554444433221 1
Q ss_pred -cchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCC-hHHHHHHHH
Q 002716 743 -HTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSE----YCDRELTRADLEMVTQLDPLR-VYPYRYRAA 816 (889)
Q Consensus 743 -p~~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~----~~~~~~A~~~l~~al~l~p~~-~~~~~~la~ 816 (889)
.-......|..++...++++-+.++...-....++.....+.+. +|++.+|.+.|-+.-..+-.+ ......+|.
T Consensus 357 DTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LAr 436 (557)
T KOG3785|consen 357 DTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLAR 436 (557)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHH
Confidence 11456678888888999999998888776666554443333332 488899999988776555333 334567899
Q ss_pred HHHhCCCHHHHHHHHHHHHhcCCC--HHHHHHHH-HHHHHcCCHHHHHHHHHHHHccCCC
Q 002716 817 VLMDSHKENEAIAELSRAIAFKAD--LHLLHLRA-AFHEHTGDVLGALRDCRAALSVDPN 873 (889)
Q Consensus 817 ~~~~~g~~~eA~~~l~kal~~~p~--~~~l~l~a-~~~~~~g~~~~A~~~~~~al~l~P~ 873 (889)
+|...++.+-|-..+-+.- .|. ...+.+.+ .+|.. +++--|.+.|...-.+||+
T Consensus 437 Cyi~nkkP~lAW~~~lk~~--t~~e~fsLLqlIAn~CYk~-~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 437 CYIRNKKPQLAWDMMLKTN--TPSERFSLLQLIANDCYKA-NEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HHHhcCCchHHHHHHHhcC--CchhHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHccCCC
Confidence 9999999998877664421 222 23444444 45555 8998888999888888876
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.40 E-value=5e-09 Score=111.07 Aligned_cols=380 Identities=11% Similarity=-0.006 Sum_probs=287.5
Q ss_pred HhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHH
Q 002716 455 RSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALC 533 (889)
Q Consensus 455 ~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~ 533 (889)
++.+ ..|-..+++|+..|..+...|..-+..-++.++..-|...+++++..-| -...++.....--.+|+...|.+
T Consensus 86 q~e~---~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 86 QKEI---QRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred HHHH---HHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHH
Confidence 4455 7888899999999999999999999999999999999999999999999 45555665666677899999999
Q ss_pred HHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHH
Q 002716 534 DVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLL 613 (889)
Q Consensus 534 ~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~ 613 (889)
+|++-+.-.|+.. ++......-.+.+.++.|...+ ++-+-..| +...|...+..
T Consensus 163 iferW~~w~P~eq-------aW~sfI~fElRykeieraR~IY------------------erfV~~HP-~v~~wikyarF 216 (677)
T KOG1915|consen 163 IFERWMEWEPDEQ-------AWLSFIKFELRYKEIERARSIY------------------ERFVLVHP-KVSNWIKYARF 216 (677)
T ss_pred HHHHHHcCCCcHH-------HHHHHHHHHHHhhHHHHHHHHH------------------HHHheecc-cHHHHHHHHHH
Confidence 9999999999886 7766667777778888886555 77776675 45678888999
Q ss_pred HHHhCCHHHHHHHHHHHHHcCCCcHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHH--HcCCC
Q 002716 614 LLRLNCPEAAMRSLQLARQHAASDHE---RLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALA--DSSQD 687 (889)
Q Consensus 614 ~~~~g~~~~A~~~l~~al~~~p~~~~---~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~--~~~~~ 687 (889)
-.+.|+...|...|++|++.-.++.. .....|..-..+..++.|...|+-|+..-|.+ .--...+.+.. +-| +
T Consensus 217 E~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfG-d 295 (677)
T KOG1915|consen 217 EEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFG-D 295 (677)
T ss_pred HHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhc-c
Confidence 99999999999999999987665433 23444555566778999999999999988888 22222222222 222 1
Q ss_pred CCcchhhhhhHHHHhcchh-----h----hCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc---------h--HH
Q 002716 688 SSCSSTVVSLLEDALKCPS-----D----RLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT---------R--AH 747 (889)
Q Consensus 688 ~~~~~~~~~~~~~Al~~~~-----~----~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~---------~--a~ 747 (889)
. .-+++++-.-. . .+..-++|...-.+-...|+.+.-.+.|++|+...|. . .|
T Consensus 296 ~-------~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLW 368 (677)
T KOG1915|consen 296 K-------EGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLW 368 (677)
T ss_pred h-------hhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHH
Confidence 1 13444432211 1 1233567887777778889999999999999998876 2 22
Q ss_pred HHHHH-HHHHcCCHHHHHHHHHHHHHHhc----cCHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 002716 748 QGLAR-VHFLKNNKTTAYEEMTKLIKKAR----NNASAYEKRSEY----CDRELTRADLEMVTQLDPLRVYPYRYRAAVL 818 (889)
Q Consensus 748 ~~La~-~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~ 818 (889)
.+.+. .-....+.+.+.+.|+.++++-| ..+.++...+.+ .+...|.+.+-.|+...|.+-- +...-.+-
T Consensus 369 inYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~Kl-Fk~YIelE 447 (677)
T KOG1915|consen 369 INYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKL-FKGYIELE 447 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhH-HHHHHHHH
Confidence 23222 22456889999999999999988 334444444443 5889999999999999997643 33333456
Q ss_pred HhCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 002716 819 MDSHKENEAIAELSRAIAFKADL-HLLHLRAAFHEHTGDVLGALRDCRAALSVDP 872 (889)
Q Consensus 819 ~~~g~~~eA~~~l~kal~~~p~~-~~l~l~a~~~~~~g~~~~A~~~~~~al~l~P 872 (889)
.+.++++.....|++-++..|.+ ..+...|.+-..+||.+.|...|+-|+....
T Consensus 448 lqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ 502 (677)
T KOG1915|consen 448 LQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA 502 (677)
T ss_pred HHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc
Confidence 67889999999999999999987 5555778888899999999999999988753
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.3e-09 Score=123.78 Aligned_cols=68 Identities=25% Similarity=0.232 Sum_probs=51.3
Q ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCc
Q 002716 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (889)
Q Consensus 479 ~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 546 (889)
.+...+.+.++...|++++|++.+++....-. ...++..+|.++..+|++++|...|+.+|..+|++.
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~ 72 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNY 72 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Confidence 34566777777788888888888877665555 566777778888888888888888888888888777
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-10 Score=136.72 Aligned_cols=282 Identities=8% Similarity=-0.028 Sum_probs=208.0
Q ss_pred hcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhh
Q 002716 473 ALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGR 551 (889)
Q Consensus 473 ~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 551 (889)
..+|.+..++..+...+...+++++|++.++.++...| ....++..|.+++..+++.++... .++...+.+.
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~----- 97 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL----- 97 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc-----
Confidence 45788999999999999999999999999999999999 888889999999999998887766 6666655554
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 002716 552 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR 631 (889)
Q Consensus 552 ~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al 631 (889)
+| .++.++ .+.+...+++..+++.+|.+|-++|+.++|...|++++
T Consensus 98 ---------------~~-~~ve~~------------------~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L 143 (906)
T PRK14720 98 ---------------KW-AIVEHI------------------CDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLV 143 (906)
T ss_pred ---------------ch-hHHHHH------------------HHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 12 222223 44445567777799999999999999999999999999
Q ss_pred HcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCch
Q 002716 632 QHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK 711 (889)
Q Consensus 632 ~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~ 711 (889)
+.+|+++.+++++|..|... +.++|++++.+|+.
T Consensus 144 ~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~--------------------------------------------- 177 (906)
T PRK14720 144 KADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIY--------------------------------------------- 177 (906)
T ss_pred hcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH---------------------------------------------
Confidence 99999999999999999999 99999999999872
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--hH-HHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhcC
Q 002716 712 GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RA-HQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYC 788 (889)
Q Consensus 712 ~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a-~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 788 (889)
.+...+++.++..++.+.+..+|+ +. +.-+-.+....| +..+...+.-+.+..+ ...
T Consensus 178 ---------~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~-~~~~~~~~~~l~~~y~----------~~~ 237 (906)
T PRK14720 178 ---------RFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHRE-FTRLVGLLEDLYEPYK----------ALE 237 (906)
T ss_pred ---------HHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhc-cchhHHHHHHHHHHHh----------hhh
Confidence 144566888888888888888887 22 222333333333 4444444444433322 124
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002716 789 DRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAAL 868 (889)
Q Consensus 789 ~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~l~l~a~~~~~~g~~~~A~~~~~~al 868 (889)
++++++..++.+++.+|.+..+...++.+|. ++|.. -..++..++... +-..-.++..|+..|++-+
T Consensus 238 ~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~----------l~~~~~~~~~~i~~fek~i 304 (906)
T PRK14720 238 DWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMSD----------IGNNRKPVKDCIADFEKNI 304 (906)
T ss_pred hhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHHHHhc----------cccCCccHHHHHHHHHHHe
Confidence 5688899999999999999999888888887 44443 444444443221 0011146677888888888
Q ss_pred ccCCCC
Q 002716 869 SVDPND 874 (889)
Q Consensus 869 ~l~P~~ 874 (889)
..+|.+
T Consensus 305 ~f~~G~ 310 (906)
T PRK14720 305 VFDTGN 310 (906)
T ss_pred eecCCC
Confidence 777765
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.3e-12 Score=129.07 Aligned_cols=291 Identities=18% Similarity=0.087 Sum_probs=180.7
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHH
Q 002716 517 LRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQM 596 (889)
Q Consensus 517 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~a 596 (889)
+-|.-++++|++...+..|+++++...++..... ..|..||..|..+++|++|+++-.. | -.+.+.
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvGTeDl~tLS--AIYsQLGNAyfyL~DY~kAl~yH~h--------D----ltlar~ 87 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLS--AIYSQLGNAYFYLKDYEKALKYHTH--------D----LTLARL 87 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhcchHHHHHH--HHHHHhcchhhhHhhHHHHHhhhhh--------h----HHHHHH
Confidence 4477778889999999999999988877775555 5677788888888888888766500 0 011222
Q ss_pred HhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC------CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002716 597 LESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA------SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (889)
Q Consensus 597 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p------~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 670 (889)
+...-..+...-++|..+--+|.|++|+.+..+-+.... ....++|++|.+|...|+.-.-. .|.
T Consensus 88 lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~---------~pe 158 (639)
T KOG1130|consen 88 LGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLE---------APE 158 (639)
T ss_pred hcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCC---------Chh
Confidence 222233344455778888888888888877655443321 23567777787777766421000 000
Q ss_pred hHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhC----------chhHHHHHHHHHHHHcCChHHHHHHHHHHHc
Q 002716 671 FEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRL----------RKGQALNNLGSVYVDCGQLDLAADCYSNALK 740 (889)
Q Consensus 671 ~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~----------~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~ 740 (889)
. .| .....+...++.|.++|...+ ..+.++-+||+.|+-.|+|++|+..-+.-+.
T Consensus 159 e------------~g---~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ 223 (639)
T KOG1130|consen 159 E------------KG---AFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLE 223 (639)
T ss_pred h------------cc---cccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHH
Confidence 0 00 001122234444444444431 1257899999999999999999999888777
Q ss_pred cCcc--------hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChHHHH
Q 002716 741 IRHT--------RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYR 812 (889)
Q Consensus 741 ~~p~--------~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~ 812 (889)
+... +++.++|.+|...|+++.|+++|.+.+......+. +..+ +...+
T Consensus 224 ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~---------r~vE---------------AQscY 279 (639)
T KOG1130|consen 224 IAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGN---------RTVE---------------AQSCY 279 (639)
T ss_pred HHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcc---------hhHH---------------HHHHH
Confidence 6544 89999999999999999999999988655331110 0011 22334
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 002716 813 YRAAVLMDSHKENEAIAELSRAIAFKADL-------HLLHLRAAFHEHTGDVLGALRDCRAALS 869 (889)
Q Consensus 813 ~la~~~~~~g~~~eA~~~l~kal~~~p~~-------~~l~l~a~~~~~~g~~~~A~~~~~~al~ 869 (889)
.+|+.|.-.+.+++||.+..+=+.+.... ...+.++..+..+|..++|+...++.++
T Consensus 280 SLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 280 SLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 56666666666666666666655443321 2223455555566666666666665554
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-11 Score=117.42 Aligned_cols=123 Identities=15% Similarity=0.035 Sum_probs=68.6
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhh
Q 002716 501 EINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDR 580 (889)
Q Consensus 501 ~l~kal~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~ 580 (889)
.++++++.+|+. +..+|..+...|++++|+..|++++..+|.+. .++..+|.++...|++++|+.++
T Consensus 15 ~~~~al~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~------~a~~~lg~~~~~~g~~~~A~~~y----- 81 (144)
T PRK15359 15 ILKQLLSVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSW------RAHIALAGTWMMLKEYTTAINFY----- 81 (144)
T ss_pred HHHHHHHcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHHHhhHHHHHHHH-----
Confidence 344555555421 33345555555555555555555555555555 55555555555555555554444
Q ss_pred cccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 002716 581 WSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILY 649 (889)
Q Consensus 581 ~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~ 649 (889)
.++++.+|.++.+++++|.++...|++++|+..|+++++..|+++..+..+|.+..
T Consensus 82 -------------~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 82 -------------GHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred -------------HHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 55555555555555666666666666666666666666666665555555555443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.3e-12 Score=131.54 Aligned_cols=265 Identities=13% Similarity=0.010 Sum_probs=147.7
Q ss_pred HHHHHhccCHHHHHHHHHHHHcCCC-C----HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHH
Q 002716 486 ASSLMTKQNVEAALAEINRILGFKL-A----LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHML 560 (889)
Q Consensus 486 a~~~~~~g~~~~Al~~l~kal~~~p-~----~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~ 560 (889)
|.-+.+.|++...+..|+.+++... + ...|..+|..|+.++||++|+++...=|.+...-....+.+.+.-.||.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 4445556666666666666655443 1 2234445666666666666665554444333322233333344455566
Q ss_pred HHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhc--CCCChHHHHHHHHHHHHhCC-------------------
Q 002716 561 VREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES--DAPKGVLYFRQSLLLLRLNC------------------- 619 (889)
Q Consensus 561 ~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~--~p~~~~~~~~la~~~~~~g~------------------- 619 (889)
.....|.|++|+.+. ...+.-+-++ .-....+++++|.+|...|+
T Consensus 104 tlKv~G~fdeA~~cc--------------~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~ 169 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCC--------------FRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTS 169 (639)
T ss_pred hhhhhcccchHHHHH--------------HHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHH
Confidence 666666666664433 0101111111 11234455666666655443
Q ss_pred -HHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-------HHHHHHHHHHHHcC
Q 002716 620 -PEAAMRSLQLARQHAAS------DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-------EAFFLKAYALADSS 685 (889)
Q Consensus 620 -~~~A~~~l~~al~~~p~------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-------~a~~~la~~~~~~~ 685 (889)
++.|.++|..-+++... ...++-++|..|+-.|+++.|+..-+.-+.+...+ .++.++|.++.-.|
T Consensus 170 al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg 249 (639)
T KOG1130|consen 170 ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLG 249 (639)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhc
Confidence 23344444444433222 12355677777777888888877777666554433 34555555555555
Q ss_pred CCCCcchhhhhhHHHHhcchhhhCc-------h---hHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--------hHH
Q 002716 686 QDSSCSSTVVSLLEDALKCPSDRLR-------K---GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--------RAH 747 (889)
Q Consensus 686 ~~~~~~~~~~~~~~~Al~~~~~~~~-------~---~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--------~a~ 747 (889)
.++.|++.|+..+. + ++..+.||+.|.-..++++|+.++++-+.+... +++
T Consensus 250 -----------~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~Rac 318 (639)
T KOG1130|consen 250 -----------NFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRAC 318 (639)
T ss_pred -----------ccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 44555555444311 1 456677788888888888888888777766543 677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhc
Q 002716 748 QGLARVHFLKNNKTTAYEEMTKLIKKAR 775 (889)
Q Consensus 748 ~~La~~~~~~g~~~~A~~~~~~al~~~~ 775 (889)
..||..+...|..++|+.+.++.++...
T Consensus 319 wSLgna~~alg~h~kAl~fae~hl~~s~ 346 (639)
T KOG1130|consen 319 WSLGNAFNALGEHRKALYFAELHLRSSL 346 (639)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 7788888888888888777777665543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.3e-09 Score=108.66 Aligned_cols=303 Identities=16% Similarity=0.097 Sum_probs=200.5
Q ss_pred HHHHHHHhhhHHHhcccHHHHHHHHHHHHHcCcchhH--hhHHHHHhhcCCcHHHHHHHhhhhhccCcchhHHHHHhhcC
Q 002716 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSI--AGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYC 459 (889)
Q Consensus 382 ~~~a~~~lG~~~~~~g~~~eA~~~~~~al~~~~~~~~--~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~~ 459 (889)
++.....-|..-+..|+|.+|++...++-+-+..... ..-|++ .+.++.+
T Consensus 83 ra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~A---------------------------A~qrgd~- 134 (400)
T COG3071 83 RARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEA---------------------------AQQRGDE- 134 (400)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHH---------------------------HHhcccH-
Confidence 3444556677888899999999999887665433322 222333 3334444
Q ss_pred ChhHHHHHHHHhhhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHH
Q 002716 460 EGDKRWEDLDKATALDPT-LSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQA 537 (889)
Q Consensus 460 ~~~~A~~~~~~al~~dp~-~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~ 537 (889)
+.+-..+.++.+..++ ....+..++.+....|++..|...+.++++..| ++..+.+...+|+..|++.+...+..+
T Consensus 135 --~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~ 212 (400)
T COG3071 135 --DRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPK 212 (400)
T ss_pred --HHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 6667778888888433 344678899999999999999999999999999 999999999999999999999998888
Q ss_pred HHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHh
Q 002716 538 ILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL 617 (889)
Q Consensus 538 al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~ 617 (889)
+-+..--+.....+.+-.-..|.+... .+-+.+... ..-+++.-..-..++.+-..++.-+.+.
T Consensus 213 L~ka~~l~~~e~~~le~~a~~glL~q~-~~~~~~~gL---------------~~~W~~~pr~lr~~p~l~~~~a~~li~l 276 (400)
T COG3071 213 LRKAGLLSDEEAARLEQQAWEGLLQQA-RDDNGSEGL---------------KTWWKNQPRKLRNDPELVVAYAERLIRL 276 (400)
T ss_pred HHHccCCChHHHHHHHHHHHHHHHHHH-hccccchHH---------------HHHHHhccHHhhcChhHHHHHHHHHHHc
Confidence 766543322111111111111111111 111111110 0111222222223455556667777778
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhhh
Q 002716 618 NCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSL 697 (889)
Q Consensus 618 g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~ 697 (889)
|+.++|.+..+.+++..-+.. ....++. ...++...=++..++.++..|+.
T Consensus 277 ~~~~~A~~~i~~~Lk~~~D~~-L~~~~~~--l~~~d~~~l~k~~e~~l~~h~~~-------------------------- 327 (400)
T COG3071 277 GDHDEAQEIIEDALKRQWDPR-LCRLIPR--LRPGDPEPLIKAAEKWLKQHPED-------------------------- 327 (400)
T ss_pred CChHHHHHHHHHHHHhccChh-HHHHHhh--cCCCCchHHHHHHHHHHHhCCCC--------------------------
Confidence 888888888888777654422 2111111 23355555555555555544443
Q ss_pred HHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc-hHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 002716 698 LEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-RAHQGLARVHFLKNNKTTAYEEMTKLIKK 773 (889)
Q Consensus 698 ~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~-~a~~~La~~~~~~g~~~~A~~~~~~al~~ 773 (889)
+..+..||..++..+.|.+|..+|+.|++..|+ ..+..+|.++.+.|+..+|.+..++++..
T Consensus 328 --------------p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 328 --------------PLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred --------------hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 357888999999999999999999999999999 88999999999999999999998888743
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-11 Score=117.19 Aligned_cols=126 Identities=8% Similarity=-0.003 Sum_probs=117.1
Q ss_pred HHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Q 002716 465 WEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSP 543 (889)
Q Consensus 465 ~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p 543 (889)
...++++++++|++ ++.+|..+...|++++|+..|++++..+| +..++..+|.++...|++++|+..|++++.++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 45689999999986 56789999999999999999999999999 999999999999999999999999999999999
Q ss_pred CCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHh
Q 002716 544 DYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL 617 (889)
Q Consensus 544 ~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~ 617 (889)
++. .+++.+|.++...|++++|+..+ .++++..|+++..+..+|.+....
T Consensus 90 ~~~------~a~~~lg~~l~~~g~~~eAi~~~------------------~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 90 SHP------EPVYQTGVCLKMMGEPGLAREAF------------------QTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CCc------HHHHHHHHHHHHcCCHHHHHHHH------------------HHHHHhCCCChHHHHHHHHHHHHH
Confidence 999 89999999999999999997777 999999999999998888876544
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.1e-09 Score=107.61 Aligned_cols=369 Identities=14% Similarity=0.028 Sum_probs=230.8
Q ss_pred HHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHH
Q 002716 454 ERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAAL 532 (889)
Q Consensus 454 ~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~ 532 (889)
....| ..+|..+..-.+..|.+-.++..+|.+|+...+|..|...|++.-...| ........+...++.+.+..|+
T Consensus 22 ~d~ry---~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 22 RDARY---ADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHhhH---HHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence 34455 6777777777777777777777788888888888888888888777777 4445555567777777777777
Q ss_pred HHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCC--CChHHHHHH
Q 002716 533 CDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA--PKGVLYFRQ 610 (889)
Q Consensus 533 ~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p--~~~~~~~~l 610 (889)
.....+... ..... +...+-+.+.+..+++..+ +-.++.-| +.+....+.
T Consensus 99 rV~~~~~D~----~~L~~--~~lqLqaAIkYse~Dl~g~----------------------rsLveQlp~en~Ad~~in~ 150 (459)
T KOG4340|consen 99 RVAFLLLDN----PALHS--RVLQLQAAIKYSEGDLPGS----------------------RSLVEQLPSENEADGQINL 150 (459)
T ss_pred HHHHHhcCC----HHHHH--HHHHHHHHHhcccccCcch----------------------HHHHHhccCCCccchhccc
Confidence 776655432 11112 3444445555555555555 33334444 456778889
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCh---------------
Q 002716 611 SLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM----KRSF--------------- 671 (889)
Q Consensus 611 a~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~----~p~~--------------- 671 (889)
|-+..+.|++++|++-|+.+++.+.-++-.-++++.++++.|+++.|+++..+++.. .|+.
T Consensus 151 gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvg 230 (459)
T KOG4340|consen 151 GCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVG 230 (459)
T ss_pred hheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhccc
Confidence 999999999999999999999999989999999999999999999999998887753 2321
Q ss_pred -----------HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCch------hHHHHHHHHHHHHcCChHHHHHH
Q 002716 672 -----------EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK------GQALNNLGSVYVDCGQLDLAADC 734 (889)
Q Consensus 672 -----------~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~------~~~~~~Lg~~y~~~g~~~~A~~~ 734 (889)
+++..++.++.+.+ .++.|.+.+.+.+.+ +..+.|++..-. .+++.+...-
T Consensus 231 Nt~~lh~Sal~eAfNLKaAIeyq~~-----------n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~K 298 (459)
T KOG4340|consen 231 NTLVLHQSALVEAFNLKAAIEYQLR-----------NYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEK 298 (459)
T ss_pred chHHHHHHHHHHHhhhhhhhhhhcc-----------cHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHH
Confidence 34445555555555 556665555554222 456666654432 3556666666
Q ss_pred HHHHHccCcc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHH------HHHHHHh--c--CCHHHHHHHHHHHHh
Q 002716 735 YSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNAS------AYEKRSE--Y--CDRELTRADLEMVTQ 802 (889)
Q Consensus 735 ~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~~~~--~--~~~~~A~~~l~~al~ 802 (889)
++-.+.++|- +...++-.+|++..-++-|.+.+. .+|.... .|..+.. + -..++|.+-+...-.
T Consensus 299 LqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLA----En~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~ 374 (459)
T KOG4340|consen 299 LQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLA----ENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAG 374 (459)
T ss_pred HHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHh----hCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 6666666655 777778788887777766655433 3332221 1111111 1 234444444333221
Q ss_pred cCCCChHHHHHHH-HHHHhC-----CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 002716 803 LDPLRVYPYRYRA-AVLMDS-----HKENEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPND 874 (889)
Q Consensus 803 l~p~~~~~~~~la-~~~~~~-----g~~~eA~~~l~kal~~~p~~~~l~l~a~~~~~~g~~~~A~~~~~~al~l~P~~ 874 (889)
. ...-++.+| .+.... .....|++.|+++++.. .+++...+++|....|+..+.+.|++..+.-.+|
T Consensus 375 ~---l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y--LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~eh 447 (459)
T KOG4340|consen 375 M---LTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY--LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDH 447 (459)
T ss_pred H---HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhccccccHHHHHHHHHHHhhhccc
Confidence 1 111111122 121111 11234555555555432 2566678999999999999999999988765443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.1e-09 Score=132.67 Aligned_cols=361 Identities=13% Similarity=0.030 Sum_probs=250.0
Q ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCCCCcchhhhHHHHHHHH
Q 002716 481 PYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILT-LSPDYRMFEGRVAASQLHM 559 (889)
Q Consensus 481 a~~~la~~~~~~g~~~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~~~a~~~lg 559 (889)
.+...|..+...|++.+|+..+..+-........+...++.....|++..+...+..+-. ....++ ......+
T Consensus 343 lh~raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~------~l~~~~a 416 (903)
T PRK04841 343 LHRAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENP------RLVLLQA 416 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCc------chHHHHH
Confidence 344556677888999988876655422211344555667778888888876666554310 111222 2334566
Q ss_pred HHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCC---------ChHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 002716 560 LVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP---------KGVLYFRQSLLLLRLNCPEAAMRSLQLA 630 (889)
Q Consensus 560 ~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~l~~a 630 (889)
.++...|++++|..++ .++....+. .......+|.++...|++++|...++++
T Consensus 417 ~~~~~~g~~~~a~~~l------------------~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 478 (903)
T PRK04841 417 WLAQSQHRYSEVNTLL------------------ARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELA 478 (903)
T ss_pred HHHHHCCCHHHHHHHH------------------HHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 7778889999997777 433322111 2334456788889999999999999999
Q ss_pred HHcCCCc-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-------HHHHHHHHHHHHcCCCCCcchhhhhhH
Q 002716 631 RQHAASD-----HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-------EAFFLKAYALADSSQDSSCSSTVVSLL 698 (889)
Q Consensus 631 l~~~p~~-----~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-------~a~~~la~~~~~~~~~~~~~~~~~~~~ 698 (889)
+...+.. ..+...+|.++...|++++|...+++++...... .+...++.++...| .+
T Consensus 479 l~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G-----------~~ 547 (903)
T PRK04841 479 LAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG-----------FL 547 (903)
T ss_pred HhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC-----------CH
Confidence 8854432 2355778999999999999999999998754322 34566788888888 66
Q ss_pred HHHhcchhhhCc------------hhHHHHHHHHHHHHcCChHHHHHHHHHHHccCc----c---hHHHHHHHHHHHcCC
Q 002716 699 EDALKCPSDRLR------------KGQALNNLGSVYVDCGQLDLAADCYSNALKIRH----T---RAHQGLARVHFLKNN 759 (889)
Q Consensus 699 ~~Al~~~~~~~~------------~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p----~---~a~~~La~~~~~~g~ 759 (889)
++|...+.+... ....+..+|.++...|++++|...+++++.... . .++..+|.++...|+
T Consensus 548 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~ 627 (903)
T PRK04841 548 QAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGD 627 (903)
T ss_pred HHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCC
Confidence 666555554311 123456789999999999999999999987532 1 566678999999999
Q ss_pred HHHHHHHHHHHHHHhccCH---HH-H-------HHHHhcCCHHHHHHHHHHHHhcCCCChH----HHHHHHHHHHhCCCH
Q 002716 760 KTTAYEEMTKLIKKARNNA---SA-Y-------EKRSEYCDRELTRADLEMVTQLDPLRVY----PYRYRAAVLMDSHKE 824 (889)
Q Consensus 760 ~~~A~~~~~~al~~~~~~~---~~-~-------~~~~~~~~~~~A~~~l~~al~l~p~~~~----~~~~la~~~~~~g~~ 824 (889)
+++|...+.++....+... .. . ......|+.+.|...+.......+.... .+..+|.++...|++
T Consensus 628 ~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~ 707 (903)
T PRK04841 628 LDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQF 707 (903)
T ss_pred HHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCH
Confidence 9999999999987644221 00 0 0111137888888887776553332222 246789999999999
Q ss_pred HHHHHHHHHHHhcCCC------H-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH
Q 002716 825 NEAIAELSRAIAFKAD------L-HLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQE 876 (889)
Q Consensus 825 ~eA~~~l~kal~~~p~------~-~~l~l~a~~~~~~g~~~~A~~~~~~al~l~P~~~~ 876 (889)
++|...+++++..... . ......+..+...|+.++|...+++|+++......
T Consensus 708 ~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~ 766 (903)
T PRK04841 708 DEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGF 766 (903)
T ss_pred HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccch
Confidence 9999999999875322 1 23347788888999999999999999998755433
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.1e-09 Score=132.64 Aligned_cols=366 Identities=12% Similarity=-0.036 Sum_probs=249.3
Q ss_pred HHHHHHHhhhHHHhcccHHHHHHHHHHHHHcCcc-hhHhhHHHHHhhcCCcHHHHHHHhhhh----hccC----cchhHH
Q 002716 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI-YSIAGLARLGYIKGHKLWAYEKLNSVI----SSVT----PLGWMY 452 (889)
Q Consensus 382 ~~~a~~~lG~~~~~~g~~~eA~~~~~~al~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~~----~~~~----~~g~~~ 452 (889)
....+...+..+...|++.+|..++..+-..... ......+......|+.......+..+- ...+ ..+|++
T Consensus 340 ~~~lh~raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~ 419 (903)
T PRK04841 340 LPELHRAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLA 419 (903)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHH
Confidence 3445667778888999999998877554221110 112234455566677665444443321 1111 235566
Q ss_pred HHHhhcCChhHHHHHHHHhhhcCCC---------ChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC--C----HHHHHH
Q 002716 453 QERSLYCEGDKRWEDLDKATALDPT---------LSYPYMYRASSLMTKQNVEAALAEINRILGFKL--A----LECLEL 517 (889)
Q Consensus 453 ~~~~~~~~~~~A~~~~~~al~~dp~---------~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p--~----~~~l~~ 517 (889)
...+.+ +++...+..+....+. .......+|.++...|++++|...+++++...+ . ..+...
T Consensus 420 ~~~g~~---~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 496 (903)
T PRK04841 420 QSQHRY---SEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSV 496 (903)
T ss_pred HHCCCH---HHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 656666 7887777776543221 123344567888999999999999999987555 2 134567
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHH
Q 002716 518 RFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQML 597 (889)
Q Consensus 518 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al 597 (889)
+|.++...|++++|...+++++..............++..++.++...|++++|..++ .+++
T Consensus 497 lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~------------------~~al 558 (903)
T PRK04841 497 LGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQ------------------EKAF 558 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHH------------------HHHH
Confidence 7888999999999999999999876554433343456778899999999999998877 4444
Q ss_pred hcC--------CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-----CcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002716 598 ESD--------APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA-----SDHERLVYEGWILYDTSHCEEGLRKAEES 664 (889)
Q Consensus 598 ~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p-----~~~~~~~~lg~~~~~~g~~~eA~~~~~~a 664 (889)
... +.....+..+|.++...|++++|...+++++.... .....+..+|.++...|++++|...++++
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a 638 (903)
T PRK04841 559 QLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRL 638 (903)
T ss_pred HHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 421 11234456789999999999999999999877532 13455667899999999999999999999
Q ss_pred HhcCCCh----HHHHH----HHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCch--------hHHHHHHHHHHHHcCCh
Q 002716 665 IQMKRSF----EAFFL----KAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK--------GQALNNLGSVYVDCGQL 728 (889)
Q Consensus 665 l~~~p~~----~a~~~----la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~--------~~~~~~Lg~~y~~~g~~ 728 (889)
..+.+.. ..... ....+...| ..+.|.......... ...+..++.++...|++
T Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----------~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~ 707 (903)
T PRK04841 639 ENLLGNGRYHSDWIANADKVRLIYWQMTG-----------DKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQF 707 (903)
T ss_pred HHHHhcccccHhHhhHHHHHHHHHHHHCC-----------CHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCH
Confidence 7653321 11010 112222334 444444443332111 22356789999999999
Q ss_pred HHHHHHHHHHHccCcc--------hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHH
Q 002716 729 DLAADCYSNALKIRHT--------RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNAS 779 (889)
Q Consensus 729 ~~A~~~~~~al~~~p~--------~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~ 779 (889)
++|...+++++..... .++..+|.++...|+.++|...+.++++.....+.
T Consensus 708 ~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~ 766 (903)
T PRK04841 708 DEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGF 766 (903)
T ss_pred HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccch
Confidence 9999999999876322 57888999999999999999999999998875543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.7e-10 Score=116.03 Aligned_cols=152 Identities=13% Similarity=0.068 Sum_probs=128.5
Q ss_pred HHHHHhccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHh
Q 002716 486 ASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHI 565 (889)
Q Consensus 486 a~~~~~~g~~~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~ 565 (889)
+..|+..|+++......++... |. .-+...++.++++..++++++.+|++. .+|..+|.++...
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~--~~--------~~~~~~~~~~~~i~~l~~~L~~~P~~~------~~w~~Lg~~~~~~ 86 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD--PL--------HQFASQQTPEAQLQALQDKIRANPQNS------EQWALLGEYYLWR 86 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC--cc--------ccccCchhHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHC
Confidence 4567788888776544432221 10 011236788999999999999999999 8999999999999
Q ss_pred hchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHH-HHhCC--HHHHHHHHHHHHHcCCCcHHHHH
Q 002716 566 DNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLL-LRLNC--PEAAMRSLQLARQHAASDHERLV 642 (889)
Q Consensus 566 ~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~~A~~~l~~al~~~p~~~~~~~ 642 (889)
|++++|...+ +++++.+|+++.++..+|.++ ...|+ +++|...++++++.+|+++.+++
T Consensus 87 g~~~~A~~a~------------------~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~ 148 (198)
T PRK10370 87 NDYDNALLAY------------------RQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALM 148 (198)
T ss_pred CCHHHHHHHH------------------HHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHH
Confidence 9999997777 999999999999999999975 67787 59999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCh
Q 002716 643 YEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (889)
Q Consensus 643 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 671 (889)
.+|..+...|++++|+..++++++..|..
T Consensus 149 ~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 149 LLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 99999999999999999999999988776
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.1e-09 Score=120.78 Aligned_cols=290 Identities=16% Similarity=0.044 Sum_probs=211.0
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 002716 553 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 632 (889)
Q Consensus 553 ~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 632 (889)
+.......++...|++++|++.+ .+....-++...+.-..|.++..+|++++|...|+..++
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L------------------~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~ 66 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHL------------------EKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELID 66 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHH------------------HhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555667888899999996666 777777788888889999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhc-chh
Q 002716 633 HAASDHERLVYEGWILYDT-----SHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALK-CPS 706 (889)
Q Consensus 633 ~~p~~~~~~~~lg~~~~~~-----g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~-~~~ 706 (889)
.+|++...+..+..+.... .+.+.-...|++.....|...+...+...+.. | ..+..... +..
T Consensus 67 rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~-g----------~~F~~~~~~yl~ 135 (517)
T PF12569_consen 67 RNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLE-G----------DEFKERLDEYLR 135 (517)
T ss_pred HCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCC-H----------HHHHHHHHHHHH
Confidence 9999999888888777333 25667777888777666665222111111111 1 02222222 222
Q ss_pred hhCch--hHHHHHHHHHHHHcCChHHHHHHHHHHH---cc-------------Ccc---hHHHHHHHHHHHcCCHHHHHH
Q 002716 707 DRLRK--GQALNNLGSVYVDCGQLDLAADCYSNAL---KI-------------RHT---RAHQGLARVHFLKNNKTTAYE 765 (889)
Q Consensus 707 ~~~~~--~~~~~~Lg~~y~~~g~~~~A~~~~~~al---~~-------------~p~---~a~~~La~~~~~~g~~~~A~~ 765 (889)
..+.+ +..+.++-.+|....+..-....+.... +. .|. .+++.+|..|...|++++|+.
T Consensus 136 ~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~ 215 (517)
T PF12569_consen 136 PQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALE 215 (517)
T ss_pred HHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 23333 5566777777665444333333333322 11 122 466889999999999999999
Q ss_pred HHHHHHHHhccCHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--C
Q 002716 766 EMTKLIKKARNNASAYEKRSEY----CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFK--A 839 (889)
Q Consensus 766 ~~~~al~~~~~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~--p 839 (889)
+++++|+..|.....|...+.. |++.+|...++.|..+|+.+-....-.+..+.+.|+.++|...+..-.... |
T Consensus 216 ~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~ 295 (517)
T PF12569_consen 216 YIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDP 295 (517)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCc
Confidence 9999999999999999988883 999999999999999999999999999999999999999999887754433 2
Q ss_pred C--H---H-HHH--HHHHHHHHcCCHHHHHHHHHHHHccC
Q 002716 840 D--L---H-LLH--LRAAFHEHTGDVLGALRDCRAALSVD 871 (889)
Q Consensus 840 ~--~---~-~l~--l~a~~~~~~g~~~~A~~~~~~al~l~ 871 (889)
. . + .|+ -.|..|.+.|++..|++.|..+.+..
T Consensus 296 ~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 296 LSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 1 1 1 222 46777888899999999999988653
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.5e-10 Score=111.93 Aligned_cols=178 Identities=16% Similarity=0.014 Sum_probs=164.5
Q ss_pred hHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 002716 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILT 540 (889)
Q Consensus 462 ~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~ 540 (889)
..+...+-+....+|++... ..++..+...|+-+.++....++....| +...+..+|...+..|+|..|+..++++..
T Consensus 50 ~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~ 128 (257)
T COG5010 50 QGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR 128 (257)
T ss_pred hHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 34566667778889999999 8999999999999999999999888888 888888899999999999999999999999
Q ss_pred hCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCH
Q 002716 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP 620 (889)
Q Consensus 541 ~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 620 (889)
..|++. +++..+|.+|.+.|+.++|..-+ .|++++.|.++.+..++|..|.-.|++
T Consensus 129 l~p~d~------~~~~~lgaaldq~Gr~~~Ar~ay------------------~qAl~L~~~~p~~~nNlgms~~L~gd~ 184 (257)
T COG5010 129 LAPTDW------EAWNLLGAALDQLGRFDEARRAY------------------RQALELAPNEPSIANNLGMSLLLRGDL 184 (257)
T ss_pred cCCCCh------hhhhHHHHHHHHccChhHHHHHH------------------HHHHHhccCCchhhhhHHHHHHHcCCH
Confidence 999999 99999999999999999997777 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002716 621 EAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEES 664 (889)
Q Consensus 621 ~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~a 664 (889)
+.|..++..+....+.+..+..+++.+...+|++++|.....+-
T Consensus 185 ~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 185 EDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 99999999999999989999999999999999999998766543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.8e-06 Score=92.12 Aligned_cols=494 Identities=10% Similarity=0.007 Sum_probs=269.9
Q ss_pred HHHHHHHcCChhhHHHHHHHHhhhccc-ccChHHHHHHhcccch----hhhh----------hhcccccccHHHHHHHH-
Q 002716 291 LMGYAIEENSPVLAVSCLQVFLRELPD-CLNDERVVEIFSHANR----QHRS----------IMVGLASFSLYCLLSEV- 354 (889)
Q Consensus 291 ~~~~a~~~~~~~l~~~c~~~~~~~l~~-~l~~~~~~~ll~~~~~----~~r~----------~~~~~~~~~l~~~ls~v- 354 (889)
++.+...++-+ ..|+.+..+-+.- .-..++.++.|+..+. .+++ ...|+.+.-+|..+...
T Consensus 144 yl~Fv~~~~lP---ets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdli 220 (835)
T KOG2047|consen 144 YLKFVESHGLP---ETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLI 220 (835)
T ss_pred HHHHHHhCCCh---HHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHH
Confidence 44556665555 5666666555421 1124666677665432 2222 22444444455554433
Q ss_pred hcCCCCCchhHH-HHHHHHHHhhhhHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHcCcchhHhhHHHHHhhcCCcHH
Q 002716 355 AMNLDPRSDKTV-CFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLW 433 (889)
Q Consensus 355 ~~~~~~~~~~~v-~~l~~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~~~~al~~~~~~~~~~la~~~~~~g~~~~ 433 (889)
+...+...+..+ ...+..+..-++.+ ...|.-|+..|++.|.|+.|.+.|+.++..--+.. ...+++-....+++
T Consensus 221 s~~p~~~~slnvdaiiR~gi~rftDq~--g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvr--DFt~ifd~Ya~FEE 296 (835)
T KOG2047|consen 221 SQNPDKVQSLNVDAIIRGGIRRFTDQL--GFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVR--DFTQIFDAYAQFEE 296 (835)
T ss_pred HhCcchhcccCHHHHHHhhcccCcHHH--HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehh--hHHHHHHHHHHHHH
Confidence 333332222222 34444455455544 34677899999999999999999999987421111 11111111000000
Q ss_pred HH--HHHhhhhhccCcchhH---HHHHhhcC-ChhH-HHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHH
Q 002716 434 AY--EKLNSVISSVTPLGWM---YQERSLYC-EGDK-RWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRIL 506 (889)
Q Consensus 434 A~--~~~~~~~~~~~~~g~~---~~~~~~~~-~~~~-A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal 506 (889)
.. ..+.-..+...+..+. -.....+. .... -+-.=.-++..||++...|..+-.+ ..|+..+-+..|..++
T Consensus 297 ~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv 374 (835)
T KOG2047|consen 297 SCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAV 374 (835)
T ss_pred HHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHH
Confidence 00 0000000000000000 00000000 0000 0001123457789999888876555 4688888899888886
Q ss_pred c-CCC------CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhh
Q 002716 507 G-FKL------ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYD 579 (889)
Q Consensus 507 ~-~~p------~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~ 579 (889)
. .+| -...+...|.+|...|+.+.|..+++++.+..-.....+. ..|..-|..-...++++.|.+.+
T Consensus 375 ~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa--~vw~~waemElrh~~~~~Al~lm---- 448 (835)
T KOG2047|consen 375 KTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLA--EVWCAWAEMELRHENFEAALKLM---- 448 (835)
T ss_pred HccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHH--HHHHHHHHHHHhhhhHHHHHHHH----
Confidence 4 455 2356677899999999999999999999987544332233 56667777778888888887766
Q ss_pred hcccccccchHHHHHHHHhcC------------C------CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHH
Q 002716 580 RWSSVDDIGSLSVIYQMLESD------------A------PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERL 641 (889)
Q Consensus 580 ~~~~~dd~~sl~~~~~al~~~------------p------~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~ 641 (889)
+.+...- | ....+|..++......|-++.....|++.+++.--.|...
T Consensus 449 --------------~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii 514 (835)
T KOG2047|consen 449 --------------RRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQII 514 (835)
T ss_pred --------------HhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHH
Confidence 3333211 1 1234566777777788888888889999999888888899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC--h-HHHHHHHHHHH-HcCCCCCcchhhhhhHHHHhcchhhhCch------
Q 002716 642 VYEGWILYDTSHCEEGLRKAEESIQMKRS--F-EAFFLKAYALA-DSSQDSSCSSTVVSLLEDALKCPSDRLRK------ 711 (889)
Q Consensus 642 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~--~-~a~~~la~~~~-~~~~~~~~~~~~~~~~~~Al~~~~~~~~~------ 711 (889)
.+.|..+.....++++.+.|++.+.+-+- - +.|...-.... +.| .. .++.|...|++++..
T Consensus 515 ~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ryg--g~-------klEraRdLFEqaL~~Cpp~~a 585 (835)
T KOG2047|consen 515 INYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYG--GT-------KLERARDLFEQALDGCPPEHA 585 (835)
T ss_pred HHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhc--CC-------CHHHHHHHHHHHHhcCCHHHH
Confidence 99999999888999999999999887643 2 44433222111 111 01 344444444444221
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHccCcchHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHhccCH--HHHHHH
Q 002716 712 GQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHF-----LKNNKTTAYEEMTKLIKKARNNA--SAYEKR 784 (889)
Q Consensus 712 ~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~~a~~~La~~~~-----~~g~~~~A~~~~~~al~~~~~~~--~~~~~~ 784 (889)
-..|...+..-..-|--..|+..|++|-..-+..-.+.+=.+|. .-|= ..-...|+++|+.-|+.. .+-...
T Consensus 586 KtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv-~~TR~iYekaIe~Lp~~~~r~mclrF 664 (835)
T KOG2047|consen 586 KTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGV-PRTREIYEKAIESLPDSKAREMCLRF 664 (835)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCC-cccHHHHHHHHHhCChHHHHHHHHHH
Confidence 23344445555555677777777777665554421122222222 1121 122456667776666322 122222
Q ss_pred Hh----cCCHHHHHHHHHHHHhcC-CC-ChHHHHHHHHHHHhCCC
Q 002716 785 SE----YCDRELTRADLEMVTQLD-PL-RVYPYRYRAAVLMDSHK 823 (889)
Q Consensus 785 ~~----~~~~~~A~~~l~~al~l~-p~-~~~~~~~la~~~~~~g~ 823 (889)
+. .|..+.|...|.-.-++- |. ++..|..--..-.+.|+
T Consensus 665 AdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 665 ADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 22 266677777776666653 32 23333333334445565
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.2e-09 Score=105.75 Aligned_cols=180 Identities=13% Similarity=0.025 Sum_probs=153.6
Q ss_pred cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhH
Q 002716 474 LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRV 552 (889)
Q Consensus 474 ~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 552 (889)
+.|+.-..|-....+.+..|+.+-|...+++.....| +.....+.|..+...|++++|+++|+..+..||.+.
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~------ 120 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDT------ 120 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchh------
Confidence 3444445566667778889999999999999877779 899999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 002716 553 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 632 (889)
Q Consensus 553 ~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 632 (889)
..+..--.+...+|+.-+|++.+ ...++..+.+.++|..++.+|...|+|++|.-+|++.+-
T Consensus 121 v~~KRKlAilka~GK~l~aIk~l------------------n~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 121 VIRKRKLAILKAQGKNLEAIKEL------------------NEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHH------------------HHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 34444445666788888886666 888999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCh-HHHHHH
Q 002716 633 HAASDHERLVYEGWILYDTS---HCEEGLRKAEESIQMKRSF-EAFFLK 677 (889)
Q Consensus 633 ~~p~~~~~~~~lg~~~~~~g---~~~eA~~~~~~al~~~p~~-~a~~~l 677 (889)
+.|.++..+..+|.+++.+| +++-|.++|.++++++|.+ .+++.+
T Consensus 183 ~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 183 IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGI 231 (289)
T ss_pred cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHH
Confidence 99999999999999999887 5678999999999999966 555543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-08 Score=102.09 Aligned_cols=378 Identities=15% Similarity=0.099 Sum_probs=252.3
Q ss_pred HhcccHHHHHHHHHHHHHcCcchhHhhHHHHHhhcCCcHHHHHHHhhhhhccCcchhHHHHHhhcCChhHHHHHHHHhhh
Q 002716 394 LLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATA 473 (889)
Q Consensus 394 ~~~g~~~eA~~~~~~al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~al~ 473 (889)
+...+|++|+++..--.+..+ .+..++. .+|..|.....| ..|..+|++.-.
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p-~~rAgLS------------------------lLgyCYY~~Q~f---~~AA~CYeQL~q 72 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSP-RSRAGLS------------------------LLGYCYYRLQEF---ALAAECYEQLGQ 72 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCc-cchHHHH------------------------HHHHHHHHHHHH---HHHHHHHHHHHh
Confidence 577788888888765544332 1111111 245566666677 888899999999
Q ss_pred cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC--CCcchhh
Q 002716 474 LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSP--DYRMFEG 550 (889)
Q Consensus 474 ~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~ 550 (889)
+.|......++-|..++..+.+..|+.....+..... ...++.+.+.+.+..+|+..+....++. | +..
T Consensus 73 l~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQl----p~en~A---- 144 (459)
T KOG4340|consen 73 LHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQL----PSENEA---- 144 (459)
T ss_pred hChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhc----cCCCcc----
Confidence 9999998889999999999999999999888766533 6678888899999999998887766553 4 233
Q ss_pred hHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 002716 551 RVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLA 630 (889)
Q Consensus 551 ~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~a 630 (889)
......|.+.++.|+++.|++-| +.+++...-++.+-++++.++.+.|+++.|+++....
T Consensus 145 --d~~in~gCllykegqyEaAvqkF------------------qaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEI 204 (459)
T KOG4340|consen 145 --DGQINLGCLLYKEGQYEAAVQKF------------------QAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEI 204 (459)
T ss_pred --chhccchheeeccccHHHHHHHH------------------HHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 56777889999999999997777 9999999999999999999999999999999997776
Q ss_pred HHc----CCC----------------c---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh------HHHH
Q 002716 631 RQH----AAS----------------D---------HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF------EAFF 675 (889)
Q Consensus 631 l~~----~p~----------------~---------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~------~a~~ 675 (889)
++. .|. + .++++..+.++++.|+++.|.+.+.. +-|.. ....
T Consensus 205 ieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtD---mPPRaE~elDPvTLH 281 (459)
T KOG4340|consen 205 IERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTD---MPPRAEEELDPVTLH 281 (459)
T ss_pred HHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhc---CCCcccccCCchhhh
Confidence 653 332 1 24566678889999999988876543 33322 2334
Q ss_pred HHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc-------hHHH
Q 002716 676 LKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-------RAHQ 748 (889)
Q Consensus 676 ~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~-------~a~~ 748 (889)
+++..-.+. ++.. -..+..=.+..++-+.+.+.|+-.+|.+..-|+.|...+- .+|+ ..++
T Consensus 282 N~Al~n~~~--~p~~------g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLA----En~~lTyk~L~~Yly 349 (459)
T KOG4340|consen 282 NQALMNMDA--RPTE------GFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLA----ENAHLTYKFLTPYLY 349 (459)
T ss_pred HHHHhcccC--Cccc------cHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHh----hCcchhHHHhhHHHH
Confidence 444332222 1111 1111111222345567888999999999988888877653 3444 2222
Q ss_pred HHHH-HHHHcCCHHHHHHHHHHHHHHhcc----C-HHHHHHHHhc--CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Q 002716 749 GLAR-VHFLKNNKTTAYEEMTKLIKKARN----N-ASAYEKRSEY--CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMD 820 (889)
Q Consensus 749 ~La~-~~~~~g~~~~A~~~~~~al~~~~~----~-~~~~~~~~~~--~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~ 820 (889)
.|-. +-..+-..++|.+-+.++-..-.. . ..+...+..- .....|++.|..++++ ...+.+..|++|+.
T Consensus 350 ~LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~---YLPVlMa~AkiyW~ 426 (459)
T KOG4340|consen 350 DLLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEK---YLPVLMAQAKIYWN 426 (459)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhcc
Confidence 3322 223345666666655544322110 0 0011111110 1123455566666654 24567889999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCHHHHH
Q 002716 821 SHKENEAIAELSRAIAFKADLHLLH 845 (889)
Q Consensus 821 ~g~~~eA~~~l~kal~~~p~~~~l~ 845 (889)
..+|..+.+.|.+..++-.+...|.
T Consensus 427 ~~Dy~~vEk~Fr~SvefC~ehd~Wk 451 (459)
T KOG4340|consen 427 LEDYPMVEKIFRKSVEFCNDHDVWK 451 (459)
T ss_pred ccccHHHHHHHHHHHhhhcccceee
Confidence 9999999999999998877764443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.4e-10 Score=111.79 Aligned_cols=108 Identities=11% Similarity=0.045 Sum_probs=59.7
Q ss_pred hHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHH-HHhccc--HHHHHHHHHH
Q 002716 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCF-FLALED--YQAALCDVQA 537 (889)
Q Consensus 462 ~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~-~~~~g~--~~~A~~~~~~ 537 (889)
++++..++++++.+|+++.+|..+|.+|...|++++|+..|++++..+| +.+.+..+|.+ +...|+ +++|...+++
T Consensus 56 ~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~ 135 (198)
T PRK10370 56 EAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDK 135 (198)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 4555555555555555555555555555555555555555555555555 55555555554 244444 3555555555
Q ss_pred HHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHH
Q 002716 538 ILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWL 575 (889)
Q Consensus 538 al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~ 575 (889)
+++.+|++. .++.++|..+...|++++|+.++
T Consensus 136 al~~dP~~~------~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 136 ALALDANEV------TALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHhCCCCh------hHHHHHHHHHHHcCCHHHHHHHH
Confidence 555555555 55555555555555555554444
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.7e-09 Score=127.52 Aligned_cols=148 Identities=14% Similarity=0.003 Sum_probs=85.8
Q ss_pred HHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Q 002716 465 WEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSP 543 (889)
Q Consensus 465 ~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p 543 (889)
+..+.......|.++.+++.+|.+....|.+++|...++.++++.| +..+...++.++.+.+.+++|+..+++++..+|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p 151 (694)
T PRK15179 72 LPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS 151 (694)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC
Confidence 3333333444555566666666666666666666666666666666 555555556666666666666666666666666
Q ss_pred CCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHH
Q 002716 544 DYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAA 623 (889)
Q Consensus 544 ~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 623 (889)
++. .+++.+|.+....|++++|+..| ++++..+|+++.++..+|.++...|+.++|
T Consensus 152 ~~~------~~~~~~a~~l~~~g~~~~A~~~y------------------~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A 207 (694)
T PRK15179 152 SSA------REILLEAKSWDEIGQSEQADACF------------------ERLSRQHPEFENGYVGWAQSLTRRGALWRA 207 (694)
T ss_pred CCH------HHHHHHHHHHHHhcchHHHHHHH------------------HHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 665 55555556666666666664444 555555555555666666666666666666
Q ss_pred HHHHHHHHHcCCC
Q 002716 624 MRSLQLARQHAAS 636 (889)
Q Consensus 624 ~~~l~~al~~~p~ 636 (889)
...|+++++....
T Consensus 208 ~~~~~~a~~~~~~ 220 (694)
T PRK15179 208 RDVLQAGLDAIGD 220 (694)
T ss_pred HHHHHHHHHhhCc
Confidence 6666665555443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2e-07 Score=102.64 Aligned_cols=404 Identities=14% Similarity=0.065 Sum_probs=263.2
Q ss_pred HHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Q 002716 467 DLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL---ALECLELRFCFFLALEDYQAALCDVQAILTLSP 543 (889)
Q Consensus 467 ~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p---~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p 543 (889)
+|++++-.-.+-+..|..-...++.+|+...-...|+++|..-| ....+-..-......|-.+-++..|++-|+.+|
T Consensus 90 c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P 169 (835)
T KOG2047|consen 90 CFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAP 169 (835)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCH
Confidence 35555555556667788888888999999999999999998888 444555555555667778899999999999999
Q ss_pred CCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHh----------------------hhhcccccc-cch---HHHHHHHH
Q 002716 544 DYRMFEGRVAASQLHMLVREHIDNWTIADCWLQL----------------------YDRWSSVDD-IGS---LSVIYQML 597 (889)
Q Consensus 544 ~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l----------------------~~~~~~~dd-~~s---l~~~~~al 597 (889)
....-+. ......+++++|.+-+.- ++-.+...+ ..+ -+.+.+.+
T Consensus 170 ~~~eeyi---------e~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi 240 (835)
T KOG2047|consen 170 EAREEYI---------EYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGI 240 (835)
T ss_pred HHHHHHH---------HHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhc
Confidence 8752211 233445555555443321 111111111 111 23445555
Q ss_pred hcCCCC-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC---cH-----HHHHHHHHHHHhcC-------------CHH
Q 002716 598 ESDAPK-GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS---DH-----ERLVYEGWILYDTS-------------HCE 655 (889)
Q Consensus 598 ~~~p~~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~---~~-----~~~~~lg~~~~~~g-------------~~~ 655 (889)
...|+. +.+|..||..|.+.|.++.|...|+++++.--. .. .+.+.-..+....+ +.+
T Consensus 241 ~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~ 320 (835)
T KOG2047|consen 241 RRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLE 320 (835)
T ss_pred ccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHH
Confidence 555544 457889999999999999999999999875432 11 12222222222222 233
Q ss_pred HHHHHHHHHHhc------------CCCh-HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhC---chhHHHHHHH
Q 002716 656 EGLRKAEESIQM------------KRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRL---RKGQALNNLG 719 (889)
Q Consensus 656 eA~~~~~~al~~------------~p~~-~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~---~~~~~~~~Lg 719 (889)
-....|+..+.. +|++ ..|.....++.. ...+.+.-+.+|++...... .+...|..+|
T Consensus 321 ~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~------~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~fa 394 (835)
T KOG2047|consen 321 LHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEG------NAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFA 394 (835)
T ss_pred HHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcC------ChHHHHHHHHHHHHccCcccCCCChhhHHHHHH
Confidence 344555555433 3444 334333333221 22344445555555443331 2278899999
Q ss_pred HHHHHcCChHHHHHHHHHHHccCcc------hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc-----------------
Q 002716 720 SVYVDCGQLDLAADCYSNALKIRHT------RAHQGLARVHFLKNNKTTAYEEMTKLIKKARN----------------- 776 (889)
Q Consensus 720 ~~y~~~g~~~~A~~~~~~al~~~p~------~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~----------------- 776 (889)
..|...|+.+.|...|++|.+..-. ..|..-|..-....+++.|++.++++.-.-.+
T Consensus 395 klYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlh 474 (835)
T KOG2047|consen 395 KLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLH 474 (835)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHH
Confidence 9999999999999999999987643 67888888888999999999999988643221
Q ss_pred -CHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCH---HHHH-HH
Q 002716 777 -NASAYEKRSE----YCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL---HLLH-LR 847 (889)
Q Consensus 777 -~~~~~~~~~~----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~---~~l~-l~ 847 (889)
...++..... +|-++.....|.+++.+.--.+....+.|..+....-+++|.+.|++.+.+.+=+ +++. .+
T Consensus 475 rSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYL 554 (835)
T KOG2047|consen 475 RSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYL 554 (835)
T ss_pred HhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHH
Confidence 1111222222 3788888999999999988888999999999999999999999999999987653 3332 22
Q ss_pred --HHHHHHcCCHHHHHHHHHHHHccCCC-CHH-HHHHHHhhh
Q 002716 848 --AAFHEHTGDVLGALRDCRAALSVDPN-DQE-MLELHSRVY 885 (889)
Q Consensus 848 --a~~~~~~g~~~~A~~~~~~al~l~P~-~~~-~l~l~~~~~ 885 (889)
..-.......+.|...|++||+.-|. +.. +.-+|++..
T Consensus 555 tkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lE 596 (835)
T KOG2047|consen 555 TKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLE 596 (835)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 22223335789999999999998873 222 334455544
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.1e-10 Score=104.78 Aligned_cols=114 Identities=12% Similarity=0.033 Sum_probs=81.9
Q ss_pred HHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHH
Q 002716 534 DVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLL 613 (889)
Q Consensus 534 ~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~ 613 (889)
.+++++..+|++. .+...+|..+...|++++|..++ ++++..+|.++.++..+|.+
T Consensus 5 ~~~~~l~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~------------------~~~~~~~p~~~~~~~~la~~ 60 (135)
T TIGR02552 5 TLKDLLGLDSEQL------EQIYALAYNLYQQGRYDEALKLF------------------QLLAAYDPYNSRYWLGLAAC 60 (135)
T ss_pred hHHHHHcCChhhH------HHHHHHHHHHHHcccHHHHHHHH------------------HHHHHhCCCcHHHHHHHHHH
Confidence 4566677777666 56666777777777777775555 66677777777777777777
Q ss_pred HHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh
Q 002716 614 LLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (889)
Q Consensus 614 ~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 671 (889)
+...|++++|...++++++.+|.++..++.+|.++...|++++|+..++++++.+|++
T Consensus 61 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 61 CQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGEN 118 (135)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 7777777777777777777777777777777777777777777777777777777766
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.5e-09 Score=122.19 Aligned_cols=266 Identities=11% Similarity=0.016 Sum_probs=199.4
Q ss_pred HHHHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHH
Q 002716 451 MYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQA 530 (889)
Q Consensus 451 ~~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g~~~~ 530 (889)
.|...+.+ ++|+...+.+++.+|+....|+.+|.++...+++.+|... .+++. .....++ .
T Consensus 40 ~~~~~~~~---deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~-------------~~~~~~~-~ 100 (906)
T PRK14720 40 AYKSENLT---DEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS-------------FSQNLKW-A 100 (906)
T ss_pred HHHhcCCH---HHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh-------------cccccch-h
Confidence 34445555 8899999999999999999999999999999998777655 44333 3333344 4
Q ss_pred HHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHH
Q 002716 531 ALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQ 610 (889)
Q Consensus 531 A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~l 610 (889)
++.++-+.+...+++. .+++.+|.+|.+.|++++|...+ +++++.+|+++.+..++
T Consensus 101 ~ve~~~~~i~~~~~~k------~Al~~LA~~Ydk~g~~~ka~~~y------------------er~L~~D~~n~~aLNn~ 156 (906)
T PRK14720 101 IVEHICDKILLYGENK------LALRTLAEAYAKLNENKKLKGVW------------------ERLVKADRDNPEIVKKL 156 (906)
T ss_pred HHHHHHHHHHhhhhhh------HHHHHHHHHHHHcCChHHHHHHH------------------HHHHhcCcccHHHHHHH
Confidence 5555555666677777 79999999999999999995555 99999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHH-HHHHcCCCC
Q 002716 611 SLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAY-ALADSSQDS 688 (889)
Q Consensus 611 a~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~-~~~~~~~~~ 688 (889)
|..|... +.++|+.++.+|+.. ++..+++.++.+.+.+.+..+|++ +.+..+-. +....+
T Consensus 157 AY~~ae~-dL~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~--- 218 (906)
T PRK14720 157 ATSYEEE-DKEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHRE--- 218 (906)
T ss_pred HHHHHHh-hHHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhc---
Confidence 9999999 999999999999876 667789999999999999999998 43333222 211111
Q ss_pred CcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--hHHHHHHHHHHHcCCHHHHHHH
Q 002716 689 SCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEE 766 (889)
Q Consensus 689 ~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~ 766 (889)
.-+-...+.-+-..|...++|++++..++.+++.+|+ .+...++.+|. +.|.. ...
T Consensus 219 -------------------~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~ 276 (906)
T PRK14720 219 -------------------FTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSL 276 (906)
T ss_pred -------------------cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cch
Confidence 0011356667778899999999999999999999998 77888888887 44432 444
Q ss_pred HHHHHHHhccCHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCC
Q 002716 767 MTKLIKKARNNASAYEKRSE-YCDRELTRADLEMVTQLDPLR 807 (889)
Q Consensus 767 ~~~al~~~~~~~~~~~~~~~-~~~~~~A~~~l~~al~l~p~~ 807 (889)
++..++... .+. ...+..++..|++-+..++.+
T Consensus 277 ~ee~l~~s~--------l~~~~~~~~~~i~~fek~i~f~~G~ 310 (906)
T PRK14720 277 LEDYLKMSD--------IGNNRKPVKDCIADFEKNIVFDTGN 310 (906)
T ss_pred HHHHHHHhc--------cccCCccHHHHHHHHHHHeeecCCC
Confidence 444444322 000 024477888888888776654
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.8e-09 Score=104.09 Aligned_cols=181 Identities=13% Similarity=-0.049 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHH
Q 002716 495 VEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADC 573 (889)
Q Consensus 495 ~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~ 573 (889)
...+...+-+....+| +... ...+..+...|+-+.+.....++...+|.+. ..+..+|......|++.+|+.
T Consensus 49 ~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~------~ll~~~gk~~~~~g~~~~A~~ 121 (257)
T COG5010 49 TQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDR------ELLAAQGKNQIRNGNFGEAVS 121 (257)
T ss_pred hhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccH------HHHHHHHHHHHHhcchHHHHH
Confidence 3346666667777888 7777 8889999999999999999999999999988 666678999999999999966
Q ss_pred HHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCC
Q 002716 574 WLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSH 653 (889)
Q Consensus 574 ~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~ 653 (889)
.+ +++....|++..+|..+|.+|.+.|+++.|...|.+++++.|.++.+..++|..++-.|+
T Consensus 122 ~~------------------rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd 183 (257)
T COG5010 122 VL------------------RKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD 183 (257)
T ss_pred HH------------------HHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC
Confidence 66 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCch
Q 002716 654 CEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK 711 (889)
Q Consensus 654 ~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~ 711 (889)
++.|..++..+....+.+ ....+++.+....| .+++|.++..+....
T Consensus 184 ~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g-----------~~~~A~~i~~~e~~~ 231 (257)
T COG5010 184 LEDAETLLLPAYLSPAADSRVRQNLALVVGLQG-----------DFREAEDIAVQELLS 231 (257)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcC-----------ChHHHHhhccccccc
Confidence 999999999998877766 88889999999999 888888888776544
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.1e-09 Score=101.57 Aligned_cols=115 Identities=20% Similarity=0.161 Sum_probs=72.9
Q ss_pred HHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhh
Q 002716 501 EINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYD 579 (889)
Q Consensus 501 ~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~ 579 (889)
.+++++..+| +......+|..++..|++++|+..+++++..+|.+. .++..+|.++...|++++|..++
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~---- 74 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNS------RYWLGLAACCQMLKEYEEAIDAY---- 74 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHHHHHHHHHHHH----
Confidence 4555666666 555566666666666666666666666666666665 56666666666666666665555
Q ss_pred hcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHH
Q 002716 580 RWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE 639 (889)
Q Consensus 580 ~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~ 639 (889)
+++++.+|.++..++.+|.++...|++++|+..++++++.+|++..
T Consensus 75 --------------~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 75 --------------ALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred --------------HHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 6666666666666666666666666666666666666666665543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.7e-08 Score=99.53 Aligned_cols=176 Identities=20% Similarity=0.149 Sum_probs=151.0
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHH
Q 002716 513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 592 (889)
Q Consensus 513 ~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~ 592 (889)
..+..........|+.+-|..+++++....|+.. ....+-|..+...|+|++|++++
T Consensus 53 ~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~------RV~~lkam~lEa~~~~~~A~e~y----------------- 109 (289)
T KOG3060|consen 53 TLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSK------RVGKLKAMLLEATGNYKEAIEYY----------------- 109 (289)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCh------hHHHHHHHHHHHhhchhhHHHHH-----------------
Confidence 3444556667778999999999999999999998 77788889999999999997777
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-
Q 002716 593 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF- 671 (889)
Q Consensus 593 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~- 671 (889)
+..++-+|.+..++.+.-.+...+|+.-+|++.+...++..+.++++|..++.+|...|++++|.-++++.+-++|-+
T Consensus 110 -~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~ 188 (289)
T KOG3060|consen 110 -ESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNP 188 (289)
T ss_pred -HHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcH
Confidence 999999999999999988899999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--hHHHH
Q 002716 672 EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQG 749 (889)
Q Consensus 672 ~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~ 749 (889)
-.+..+|.++.-.| . ..++.-|.++|.++++++|. .++++
T Consensus 189 l~f~rlae~~Yt~g----------------------------------g----~eN~~~arkyy~~alkl~~~~~ral~G 230 (289)
T KOG3060|consen 189 LYFQRLAEVLYTQG----------------------------------G----AENLELARKYYERALKLNPKNLRALFG 230 (289)
T ss_pred HHHHHHHHHHHHHh----------------------------------h----HHHHHHHHHHHHHHHHhChHhHHHHHH
Confidence 44444555544443 2 35677899999999999996 55554
Q ss_pred H
Q 002716 750 L 750 (889)
Q Consensus 750 L 750 (889)
+
T Consensus 231 I 231 (289)
T KOG3060|consen 231 I 231 (289)
T ss_pred H
Confidence 4
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.7e-08 Score=111.46 Aligned_cols=215 Identities=13% Similarity=0.016 Sum_probs=148.2
Q ss_pred HhhhHHHhcccHHHHHHHHHHHHHcCcchhHhhHHHHHhhcCCcHHHHHHHhhhhhccCcchhHHHHHhhcCChhHHHHH
Q 002716 388 QLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWED 467 (889)
Q Consensus 388 ~lG~~~~~~g~~~eA~~~~~~al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~ 467 (889)
.+|..++..|-..+|...|++. +.+.++..+|...|+. .+|...
T Consensus 403 ~laell~slGitksAl~I~Erl------emw~~vi~CY~~lg~~------------------------------~kaeei 446 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERL------EMWDPVILCYLLLGQH------------------------------GKAEEI 446 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhH------HHHHHHHHHHHHhccc------------------------------chHHHH
Confidence 4556666666666666666553 2233344444444443 444444
Q ss_pred HHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcc
Q 002716 468 LDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (889)
Q Consensus 468 ~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 547 (889)
..+-++ .|+++..|..+|.+.....-|++|.+..+..- ..+....|......++|+++.+.++..++++|-..
T Consensus 447 ~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~s-----arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~- 519 (777)
T KOG1128|consen 447 NRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYIS-----ARAQRSLALLILSNKDFSEADKHLERSLEINPLQL- 519 (777)
T ss_pred HHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhh-----HHHHHhhccccccchhHHHHHHHHHHHhhcCccch-
Confidence 444455 56666677777777777766777776665532 23344445555567788888888888888888777
Q ss_pred hhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHH
Q 002716 548 FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSL 627 (889)
Q Consensus 548 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l 627 (889)
..|+.+|.++.+.+++..|.+.| ...+..+|++..+|.+++..|.+.|+..+|...+
T Consensus 520 -----~~wf~~G~~ALqlek~q~av~aF------------------~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l 576 (777)
T KOG1128|consen 520 -----GTWFGLGCAALQLEKEQAAVKAF------------------HRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKL 576 (777)
T ss_pred -----hHHHhccHHHHHHhhhHHHHHHH------------------HHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHH
Confidence 77888888888888888886666 7788888888888888888888888888888888
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 002716 628 QLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (889)
Q Consensus 628 ~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 668 (889)
.+|++.+-++...|-+...+..+.|++++|++.|.+.+.+.
T Consensus 577 ~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 577 KEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 88888777777777777777788888888888888777654
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=3e-09 Score=125.38 Aligned_cols=133 Identities=9% Similarity=-0.084 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchH
Q 002716 511 ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSL 590 (889)
Q Consensus 511 ~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl 590 (889)
..+++.++|.+....|.+++|...++.++++.|++. .+...++.+..+.+++++|..++
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~------~a~~~~a~~L~~~~~~eeA~~~~--------------- 143 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSS------EAFILMLRGVKRQQGIEAGRAEI--------------- 143 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcH------HHHHHHHHHHHHhccHHHHHHHH---------------
Confidence 344444445555555555555555555555555444 44444444445555555553333
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002716 591 SVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (889)
Q Consensus 591 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 667 (889)
++++..+|+++..++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++.
T Consensus 144 ---~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 144 ---ELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred ---HHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44445555555555555555555555555555555554444444445555555555555555555555544443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.4e-10 Score=113.31 Aligned_cols=118 Identities=19% Similarity=0.214 Sum_probs=104.5
Q ss_pred hccCcchhHHHHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHH
Q 002716 443 SSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCF 521 (889)
Q Consensus 443 ~~~~~~g~~~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~ 521 (889)
+..+..|.-..+.+.| .+|+..|.+||+++|+++..|.++|.+|.+.|.++.|++.++.++.++| ...+|..+|.+
T Consensus 82 E~LK~eGN~~m~~~~Y---~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A 158 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDY---QEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLA 158 (304)
T ss_pred HHHHHHHHHHHHhhhH---HHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4455677778888999 9999999999999999999999999999999999999999999999999 88999999999
Q ss_pred HHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchh
Q 002716 522 FLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWT 569 (889)
Q Consensus 522 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~ 569 (889)
|+.+|++++|+..|+++|.++|++. .....|..+....++..
T Consensus 159 ~~~~gk~~~A~~aykKaLeldP~Ne------~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 159 YLALGKYEEAIEAYKKALELDPDNE------SYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHccCcHHHHHHHHHhhhccCCCcH------HHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999998 45555555555555433
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.1e-09 Score=117.09 Aligned_cols=221 Identities=17% Similarity=0.056 Sum_probs=160.2
Q ss_pred CCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHH
Q 002716 476 PTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAAS 555 (889)
Q Consensus 476 p~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~ 555 (889)
|.....-..+|.+++..|-...|+..+++. ..+-....||...|+-.+|..+..+-++. |+++ ..|
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-------emw~~vi~CY~~lg~~~kaeei~~q~lek-~~d~------~ly 460 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-------EMWDPVILCYLLLGQHGKAEEINRQELEK-DPDP------RLY 460 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-------HHHHHHHHHHHHhcccchHHHHHHHHhcC-CCcc------hhH
Confidence 444555678899999999999999999985 45556778888899999999999999994 4444 477
Q ss_pred HHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Q 002716 556 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA 635 (889)
Q Consensus 556 ~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p 635 (889)
..+|.+.....-|++|.++. ++ .++.+...+|......+++.++.+.++..++++|
T Consensus 461 c~LGDv~~d~s~yEkawEls------------------n~------~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~np 516 (777)
T KOG1128|consen 461 CLLGDVLHDPSLYEKAWELS------------------NY------ISARAQRSLALLILSNKDFSEADKHLERSLEINP 516 (777)
T ss_pred HHhhhhccChHHHHHHHHHh------------------hh------hhHHHHHhhccccccchhHHHHHHHHHHHhhcCc
Confidence 88888887777777775555 22 2333556677777788999999999999999999
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHH
Q 002716 636 SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQA 714 (889)
Q Consensus 636 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~ 714 (889)
-....|+.+|.+..+.++++.|...|..++.++|++ ++|.+++.++...+ ...++...+.+|+++-.+. ...
T Consensus 517 lq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~----~k~ra~~~l~EAlKcn~~~---w~i 589 (777)
T KOG1128|consen 517 LQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLK----KKKRAFRKLKEALKCNYQH---WQI 589 (777)
T ss_pred cchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHh----hhHHHHHHHHHHhhcCCCC---Cee
Confidence 999999999999999999999999999999999998 76666666655554 1112222333333333111 234
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHcc
Q 002716 715 LNNLGSVYVDCGQLDLAADCYSNALKI 741 (889)
Q Consensus 715 ~~~Lg~~y~~~g~~~~A~~~~~~al~~ 741 (889)
|-|.-.+..+.|.+++|++.|.+.+.+
T Consensus 590 WENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 590 WENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred eechhhhhhhcccHHHHHHHHHHHHHh
Confidence 444444455555555555555555444
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-09 Score=110.97 Aligned_cols=117 Identities=17% Similarity=0.181 Sum_probs=108.8
Q ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHH
Q 002716 481 PYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHM 559 (889)
Q Consensus 481 a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg 559 (889)
-+..-|.-+++.++|.+|+..|.++|.++| ++-.|..++.+|.++|.++.|+++++.++.+||.+. ++|..||
T Consensus 83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~ys------kay~RLG 156 (304)
T KOG0553|consen 83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYS------KAYGRLG 156 (304)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHH------HHHHHHH
Confidence 456779999999999999999999999999 999999999999999999999999999999999999 9999999
Q ss_pred HHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHH
Q 002716 560 LVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPE 621 (889)
Q Consensus 560 ~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 621 (889)
.+|..+|++.+|++.| +++|+++|++.....+|..+-..+++..
T Consensus 157 ~A~~~~gk~~~A~~ay------------------kKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 157 LAYLALGKYEEAIEAY------------------KKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHccCcHHHHHHHH------------------HhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999997777 9999999999988888888777777665
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=8e-08 Score=103.70 Aligned_cols=148 Identities=17% Similarity=0.055 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 002716 553 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 632 (889)
Q Consensus 553 ~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 632 (889)
.+.+..+..++..|++++|...+ ...+...|+|+..+...+.++.+.|+.++|.+.+++++.
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l------------------~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~ 368 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLL------------------QPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALA 368 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHH------------------HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 57777777777777777775555 777777777777777777888888888888888888888
Q ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCch
Q 002716 633 HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK 711 (889)
Q Consensus 633 ~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~ 711 (889)
..|+.+....++|..+.+.|++.+|+..++..+..+|++ ..|..++.++..+|...
T Consensus 369 l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~----------------------- 425 (484)
T COG4783 369 LDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRA----------------------- 425 (484)
T ss_pred cCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchH-----------------------
Confidence 888777777777888888888888888877777777777 77777777777776222
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHccC
Q 002716 712 GQALNNLGSVYVDCGQLDLAADCYSNALKIR 742 (889)
Q Consensus 712 ~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~ 742 (889)
.+....+..|...|++++|+..+..+.+..
T Consensus 426 -~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 426 -EALLARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred -HHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 455566777778888888888888777654
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.4e-08 Score=94.90 Aligned_cols=217 Identities=16% Similarity=0.071 Sum_probs=127.6
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchH
Q 002716 511 ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSL 590 (889)
Q Consensus 511 ~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl 590 (889)
.+..++.+|..|-..|-..-|.-+|.+++.+.|+-+ .+++.+|..+...|+++.|.+.|
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~------~vfNyLG~Yl~~a~~fdaa~eaF--------------- 122 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMP------EVFNYLGIYLTQAGNFDAAYEAF--------------- 122 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcH------HHHHHHHHHHHhcccchHHHHHh---------------
Confidence 344556667777777777777777777777777777 67777777777777777775555
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhcCC
Q 002716 591 SVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRK-AEESIQMKR 669 (889)
Q Consensus 591 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~-~~~al~~~p 669 (889)
...++++|....+..+.|..+..-|++.-|.+.+.+..+.+|++|-.-..+=..- ..-+..+|... .+++-..+.
T Consensus 123 ---ds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E-~k~dP~~A~tnL~qR~~~~d~ 198 (297)
T COG4785 123 ---DSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE-QKLDPKQAKTNLKQRAEKSDK 198 (297)
T ss_pred ---hhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH-hhCCHHHHHHHHHHHHHhccH
Confidence 6777777777777777777777777777777777777777777664332221111 12234444433 333443333
Q ss_pred ChHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhh----CchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc-
Q 002716 670 SFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR----LRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT- 744 (889)
Q Consensus 670 ~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~----~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~- 744 (889)
+.-.|.....-+.... .....+.+....+.. -.-.++++.||..|...|+.++|...|+-|+..+--
T Consensus 199 e~WG~~iV~~yLgkiS--------~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVyn 270 (297)
T COG4785 199 EQWGWNIVEFYLGKIS--------EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVYN 270 (297)
T ss_pred hhhhHHHHHHHHhhcc--------HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHHH
Confidence 3322222222222211 000222222222211 011578899999999999999999999988876532
Q ss_pred -----hHHHHHHHHHHHcCCH
Q 002716 745 -----RAHQGLARVHFLKNNK 760 (889)
Q Consensus 745 -----~a~~~La~~~~~~g~~ 760 (889)
.+...|+.+...+.+.
T Consensus 271 fVE~RyA~~EL~~l~q~~~~l 291 (297)
T COG4785 271 FVEHRYALLELSLLGQDQDDL 291 (297)
T ss_pred HHHHHHHHHHHHHhccccchh
Confidence 5555666665555444
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.97 E-value=5e-08 Score=103.79 Aligned_cols=237 Identities=16% Similarity=0.040 Sum_probs=159.1
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--h-HHHHHHHHH
Q 002716 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS--F-EAFFLKAYA 680 (889)
Q Consensus 604 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~--~-~a~~~la~~ 680 (889)
......+.+.++.+|+++..+..+... .+....+...++..+...++.+.++..+++.+..... + ......|.+
T Consensus 35 ~e~~~~~~Rs~iAlg~~~~vl~ei~~~---~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i 111 (290)
T PF04733_consen 35 LERDFYQYRSYIALGQYDSVLSEIKKS---SSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATI 111 (290)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHS-TT---SSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhHHHHHhccC---CChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 345567778888888888766555331 2223445555565555555677777777665543322 3 333445566
Q ss_pred HHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcchHHHHHHHHH--HHcC
Q 002716 681 LADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVH--FLKN 758 (889)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~~a~~~La~~~--~~~g 758 (889)
+...| .+++|++.+.+. ...+.......+|..+++++.|.+.++++-+.+.+.....++..+ ...|
T Consensus 112 ~~~~~-----------~~~~AL~~l~~~-~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g 179 (290)
T PF04733_consen 112 LFHEG-----------DYEEALKLLHKG-GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATG 179 (290)
T ss_dssp HCCCC-----------HHHHHHCCCTTT-TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHT
T ss_pred HHHcC-----------CHHHHHHHHHcc-CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhC
Confidence 66667 888888888877 334556666778888888888888888888888776666655533 3334
Q ss_pred CHHHHHHHHHHHHHHhccCHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q 002716 759 NKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFK 838 (889)
Q Consensus 759 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~ 838 (889)
. ..+.+|...|+...+..+..+..+..+|.+.+.+|++++|...+++++..+
T Consensus 180 ~----------------------------e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~ 231 (290)
T PF04733_consen 180 G----------------------------EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD 231 (290)
T ss_dssp T----------------------------TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred c----------------------------hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 2 123556666666556556677888899999999999999999999999999
Q ss_pred CCH-HHHHHHHHHHHHcCCH-HHHHHHHHHHHccCCCCHHHHHHHHh
Q 002716 839 ADL-HLLHLRAAFHEHTGDV-LGALRDCRAALSVDPNDQEMLELHSR 883 (889)
Q Consensus 839 p~~-~~l~l~a~~~~~~g~~-~~A~~~~~~al~l~P~~~~~l~l~~~ 883 (889)
|++ ..+..+..+...+|+. +.+.+.+.+....+|+|+.+.++-.+
T Consensus 232 ~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~~~~ 278 (290)
T PF04733_consen 232 PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDLAEK 278 (290)
T ss_dssp CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 986 5555777877777888 66777888888899999998877554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.5e-08 Score=106.08 Aligned_cols=257 Identities=17% Similarity=0.121 Sum_probs=163.5
Q ss_pred HHHHhccCHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHH
Q 002716 487 SSLMTKQNVEAALAEINRILGFKL--ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREH 564 (889)
Q Consensus 487 ~~~~~~g~~~~Al~~l~kal~~~p--~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~ 564 (889)
+-++-.|+|.+++..++ ....++ .........+.+..+|+++..+......- .|.. .+...++.....
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~--~~~l-------~av~~la~y~~~ 78 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSS--SPEL-------QAVRLLAEYLSS 78 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS--SCCC-------HHHHHHHHHHCT
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCC--ChhH-------HHHHHHHHHHhC
Confidence 45567899999998777 444555 55666777888899999887665443311 2222 355555544433
Q ss_pred hhchhHHHHHHHhhhhcccccccchHHHHHHHHhcC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHH
Q 002716 565 IDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD--APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLV 642 (889)
Q Consensus 565 ~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 642 (889)
.++.+.++ ..+.+.+... +.++.+....|.++...|++++|++.+.+. .+.+...
T Consensus 79 ~~~~e~~l------------------~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~a 135 (290)
T PF04733_consen 79 PSDKESAL------------------EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLA 135 (290)
T ss_dssp STTHHCHH------------------HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHH
T ss_pred ccchHHHH------------------HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHH
Confidence 23333332 2223333222 234556667778888899999999888753 5577777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHH
Q 002716 643 YEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVY 722 (889)
Q Consensus 643 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y 722 (889)
..-.++...++++.|.+.++.+-+.+.+. ...+++. +|.++ +
T Consensus 136 l~Vqi~L~~~R~dlA~k~l~~~~~~~eD~-~l~qLa~----------------------------------awv~l---~ 177 (290)
T PF04733_consen 136 LAVQILLKMNRPDLAEKELKNMQQIDEDS-ILTQLAE----------------------------------AWVNL---A 177 (290)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHCCSCCH-HHHHHHH----------------------------------HHHHH---H
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcH-HHHHHHH----------------------------------HHHHH---H
Confidence 78889999999999999999888776654 1122221 12111 1
Q ss_pred HHcCChHHHHHHHHHHHccCcc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhcCCHHHHHHHHHHH
Q 002716 723 VDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMV 800 (889)
Q Consensus 723 ~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~~a 800 (889)
...+++.+|...|+...+..+. ..++++|.++..+|++ ++|...+.++
T Consensus 178 ~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~------------------------------~eAe~~L~~a 227 (290)
T PF04733_consen 178 TGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHY------------------------------EEAEELLEEA 227 (290)
T ss_dssp HTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-H------------------------------HHHHHHHHHH
T ss_pred hCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCH------------------------------HHHHHHHHHH
Confidence 1124688999999997776544 7778899999999999 5555556666
Q ss_pred HhcCCCChHHHHHHHHHHHhCCCH-HHHHHHHHHHHhcCCCHHHH
Q 002716 801 TQLDPLRVYPYRYRAAVLMDSHKE-NEAIAELSRAIAFKADLHLL 844 (889)
Q Consensus 801 l~l~p~~~~~~~~la~~~~~~g~~-~eA~~~l~kal~~~p~~~~l 844 (889)
++.+|.++.++.+++.+....|+. +.+..++++....+|+.+.+
T Consensus 228 l~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 228 LEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp CCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred HHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 677778888888888888888877 55666777777778875444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.8e-07 Score=101.07 Aligned_cols=134 Identities=18% Similarity=0.075 Sum_probs=94.8
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchH
Q 002716 511 ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSL 590 (889)
Q Consensus 511 ~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl 590 (889)
.....+..+..++..|++++|+..++.++...|+|+ ..+...+.++...++..+|.+.+
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~------~~~~~~~~i~~~~nk~~~A~e~~--------------- 363 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNP------YYLELAGDILLEANKAKEAIERL--------------- 363 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCChHHHHHHH---------------
Confidence 566666777777777777777777777777777777 45556667777777777775555
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 002716 591 SVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (889)
Q Consensus 591 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 668 (889)
++++..+|..+.+..++|.+|++.|++.+|+..++..+..+|+++..|..+|..|..+|+..+|...+-+.....
T Consensus 364 ---~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~ 438 (484)
T COG4783 364 ---KKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALA 438 (484)
T ss_pred ---HHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhC
Confidence 777777777777777777777777777777777777777777777777777777777777777666665554433
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.6e-08 Score=93.14 Aligned_cols=100 Identities=9% Similarity=-0.073 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchH
Q 002716 511 ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSL 590 (889)
Q Consensus 511 ~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl 590 (889)
..+.++..|..++..|++++|...|+-+...+|.+. ..++.||.++...|+|.+|+..|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~------~y~~gLG~~~Q~~g~~~~AI~aY--------------- 92 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSF------DYWFRLGECCQAQKHWGEAIYAY--------------- 92 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH------HHHHHHHHHHHHHhhHHHHHHHH---------------
Confidence 445555555555555555555555555555555555 45555555555555555553333
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Q 002716 591 SVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA 634 (889)
Q Consensus 591 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 634 (889)
.+++.++|+++..+++.|.+++..|+.+.|.+.|+.++...
T Consensus 93 ---~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 93 ---GRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred ---HHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 55555555555555555555555555555555555555443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.8e-08 Score=93.02 Aligned_cols=98 Identities=8% Similarity=-0.082 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 002716 553 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 632 (889)
Q Consensus 553 ~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 632 (889)
+..+.+|......|++++|...| +-....+|.+...|+++|.++..+|++++|+..|.++..
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f------------------~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~ 97 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLF------------------QLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ 97 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHH------------------HHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 66777777777777777776666 777777777777777777777777777777777777777
Q ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 002716 633 HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (889)
Q Consensus 633 ~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 668 (889)
++|+++..+.+.|.++...|+.+.|.+.|+.++...
T Consensus 98 L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 98 IKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 777777777777777777777777777777777665
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.3e-07 Score=94.00 Aligned_cols=183 Identities=14% Similarity=0.012 Sum_probs=110.4
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchH
Q 002716 511 ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSL 590 (889)
Q Consensus 511 ~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl 590 (889)
.+..++..|...+..|+|.+|+..|++++...|...... .+...+|.++...|++++|...+
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~---~A~l~la~a~y~~~~y~~A~~~~--------------- 65 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAP---QAQLMLAYAYYKQGDYEEAIAAY--------------- 65 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHH---HHHHHHHHHHHHTT-HHHHHHHH---------------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHH---HHHHHHHHHHHHcCCHHHHHHHH---------------
Confidence 445666677777777777777777777777777665221 24555555555555555554444
Q ss_pred HHHHHHHhcCCCCh---HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002716 591 SVIYQMLESDAPKG---VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (889)
Q Consensus 591 ~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 667 (889)
++.++..|.++ .+++.+|.++..... ..+ ....+++...+|+..|+..+..
T Consensus 66 ---~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~---------~~~--------------~~~~D~~~~~~A~~~~~~li~~ 119 (203)
T PF13525_consen 66 ---ERFIKLYPNSPKADYALYMLGLSYYKQIP---------GIL--------------RSDRDQTSTRKAIEEFEELIKR 119 (203)
T ss_dssp ---HHHHHH-TT-TTHHHHHHHHHHHHHHHHH---------HHH---------------TT---HHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHCCCCcchhhHHHHHHHHHHHhCc---------cch--------------hcccChHHHHHHHHHHHHHHHH
Confidence 55555555443 345555554433310 000 1123345567888899999888
Q ss_pred CCCh----HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCc
Q 002716 668 KRSF----EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH 743 (889)
Q Consensus 668 ~p~~----~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p 743 (889)
.|+. .+...+..+-... +.--..+|..|.+.|.+..|+..++.+++..|
T Consensus 120 yP~S~y~~~A~~~l~~l~~~l---------------------------a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp 172 (203)
T PF13525_consen 120 YPNSEYAEEAKKRLAELRNRL---------------------------AEHELYIARFYYKRGKYKAAIIRFQYVIENYP 172 (203)
T ss_dssp -TTSTTHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHST
T ss_pred CcCchHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 8887 2222222221111 13446689999999999999999999999999
Q ss_pred c-----hHHHHHHHHHHHcCCHHHHH
Q 002716 744 T-----RAHQGLARVHFLKNNKTTAY 764 (889)
Q Consensus 744 ~-----~a~~~La~~~~~~g~~~~A~ 764 (889)
+ .++..++..|...|..+.|.
T Consensus 173 ~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 173 DTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp TSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CCchHHHHHHHHHHHHHHhCChHHHH
Confidence 8 78899999999999987443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.6e-07 Score=95.16 Aligned_cols=160 Identities=11% Similarity=0.022 Sum_probs=119.7
Q ss_pred ChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHH
Q 002716 478 LSYPYMYRASSLMTKQNVEAALAEINRILGFKL----ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVA 553 (889)
Q Consensus 478 ~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p----~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 553 (889)
.+..++..|..++..|+|.+|+..|++++...| ...+.+.+|.+++..|++++|+..+++.++..|+++... .
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~---~ 80 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD---Y 80 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH---H
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh---h
Confidence 356788999999999999999999999998877 578889999999999999999999999999999988432 4
Q ss_pred HHHHHHHHHHHhhc-----------hhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHH----------------
Q 002716 554 ASQLHMLVREHIDN-----------WTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL---------------- 606 (889)
Q Consensus 554 a~~~lg~~~~~~~~-----------~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~---------------- 606 (889)
+++.+|.++..... ..+|...| +..+...|+...+
T Consensus 81 A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~------------------~~li~~yP~S~y~~~A~~~l~~l~~~la~ 142 (203)
T PF13525_consen 81 ALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEF------------------EELIKRYPNSEYAEEAKKRLAELRNRLAE 142 (203)
T ss_dssp HHHHHHHHHHHHHHHHH-TT---HHHHHHHHHH------------------HHHHHH-TTSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccchhcccChHHHHHHHHHH------------------HHHHHHCcCchHHHHHHHHHHHHHHHHHH
Confidence 78888888765432 23554444 7777888876532
Q ss_pred -HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcH---HHHHHHHHHHHhcCCHHHHH
Q 002716 607 -YFRQSLLLLRLNCPEAAMRSLQLARQHAASDH---ERLVYEGWILYDTSHCEEGL 658 (889)
Q Consensus 607 -~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~---~~~~~lg~~~~~~g~~~eA~ 658 (889)
-+.+|..|.+.|.+..|+..++.+++..|+.. +++..++..+...|..+.|.
T Consensus 143 ~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 143 HELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 23567788888888888888888888888753 56778888888888877443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.85 E-value=8.1e-07 Score=91.71 Aligned_cols=170 Identities=14% Similarity=0.056 Sum_probs=121.7
Q ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHH
Q 002716 481 PYMYRASSLMTKQNVEAALAEINRILGFKL----ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQ 556 (889)
Q Consensus 481 a~~~la~~~~~~g~~~~Al~~l~kal~~~p----~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ 556 (889)
-....|.-++...++++|+....+.+..-. ....+--+..+...+|.|++++..--..+....+........+++.
T Consensus 8 ~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~l 87 (518)
T KOG1941|consen 8 KQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYL 87 (518)
T ss_pred HHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778888999999999888876544 2223333455677888998888765555544333333334447888
Q ss_pred HHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcC---C--CChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 002716 557 LHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD---A--PKGVLYFRQSLLLLRLNCPEAAMRSLQLAR 631 (889)
Q Consensus 557 ~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~---p--~~~~~~~~la~~~~~~g~~~~A~~~l~~al 631 (889)
.++..+....++.+++.+- .-.+... | .-......+|.++..++.+++++++|+.|+
T Consensus 88 nlar~~e~l~~f~kt~~y~------------------k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~ 149 (518)
T KOG1941|consen 88 NLARSNEKLCEFHKTISYC------------------KTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKAL 149 (518)
T ss_pred HHHHHHHHHHHhhhHHHHH------------------HHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHH
Confidence 8899999888888885554 3333221 1 122456678999999999999999999999
Q ss_pred HcCCCcH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 002716 632 QHAASDH------ERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (889)
Q Consensus 632 ~~~p~~~------~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 668 (889)
+...++. .+...+|..+....++++|+-+..+|.++-
T Consensus 150 ~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv 192 (518)
T KOG1941|consen 150 RYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELV 192 (518)
T ss_pred HHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHH
Confidence 8754433 467889999999999999999999888654
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.2e-07 Score=95.24 Aligned_cols=179 Identities=9% Similarity=0.000 Sum_probs=132.4
Q ss_pred CChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-C---HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhH
Q 002716 477 TLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-A---LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRV 552 (889)
Q Consensus 477 ~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~---~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 552 (889)
..+..++..|..++..|+|++|+..|++++...| + ..+.+.+|.+++..+++++|+..+++.++.+|+++...
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~--- 106 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID--- 106 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH---
Confidence 3455678899999999999999999999999999 3 33457889999999999999999999999999998442
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHhhhhc--ccccc---cchHHHHHHHHhcCCCChHH-----------------HHHH
Q 002716 553 AASQLHMLVREHIDNWTIADCWLQLYDRW--SSVDD---IGSLSVIYQMLESDAPKGVL-----------------YFRQ 610 (889)
Q Consensus 553 ~a~~~lg~~~~~~~~~~~A~~~~~l~~~~--~~~dd---~~sl~~~~~al~~~p~~~~~-----------------~~~l 610 (889)
.+++.+|.++...+.- ++..+... ...|. ..++..+++.++..|+...+ -+..
T Consensus 107 ~a~Y~~g~~~~~~~~~-----~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~i 181 (243)
T PRK10866 107 YVLYMRGLTNMALDDS-----ALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSV 181 (243)
T ss_pred HHHHHHHHhhhhcchh-----hhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888876444310 00000000 00000 01244557888888876422 2356
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002716 611 SLLLLRLNCPEAAMRSLQLARQHAAS---DHERLVYEGWILYDTSHCEEGLRKAEE 663 (889)
Q Consensus 611 a~~~~~~g~~~~A~~~l~~al~~~p~---~~~~~~~lg~~~~~~g~~~eA~~~~~~ 663 (889)
|..|.+.|.+..|+.-++.+++..|+ ..++++.++..|...|..++|......
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 77889999999999999999998876 467889999999999999998876653
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.5e-07 Score=93.49 Aligned_cols=173 Identities=9% Similarity=-0.052 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHH---HHHHHHHHHhCCHHHHHHHHHH
Q 002716 553 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLY---FRQSLLLLRLNCPEAAMRSLQL 629 (889)
Q Consensus 553 ~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~---~~la~~~~~~g~~~~A~~~l~~ 629 (889)
...+..|......|++++|+..| ++.+...|..+.+. +.+|.+|.+.+++++|+..+++
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f------------------~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~ 94 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQL------------------EALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDR 94 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHH------------------HHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 45666777778888888886666 88888888776554 7888888888888888888888
Q ss_pred HHHcCCCc---HHHHHHHHHHHHhcC------------------CHHHHHHHHHHHHhcCCCh----HHHHHHHHHHHHc
Q 002716 630 ARQHAASD---HERLVYEGWILYDTS------------------HCEEGLRKAEESIQMKRSF----EAFFLKAYALADS 684 (889)
Q Consensus 630 al~~~p~~---~~~~~~lg~~~~~~g------------------~~~eA~~~~~~al~~~p~~----~a~~~la~~~~~~ 684 (889)
.++..|++ +.+++.+|.++...+ ...+|+..|++.++..|+. ++...+..+....
T Consensus 95 fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~l 174 (243)
T PRK10866 95 FIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRL 174 (243)
T ss_pred HHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHH
Confidence 88887765 456777777654433 1346778888888888876 3333233222221
Q ss_pred CCCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc-----hHHHHHHHHHHHcCC
Q 002716 685 SQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-----RAHQGLARVHFLKNN 759 (889)
Q Consensus 685 ~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~-----~a~~~La~~~~~~g~ 759 (889)
+.--..+|..|.+.|.|..|+.-++.+++..|+ +++..++..|...|.
T Consensus 175 ---------------------------a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~ 227 (243)
T PRK10866 175 ---------------------------AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQL 227 (243)
T ss_pred ---------------------------HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCC
Confidence 133457889999999999999999999999988 889999999999999
Q ss_pred HHHHHHHHHHH
Q 002716 760 KTTAYEEMTKL 770 (889)
Q Consensus 760 ~~~A~~~~~~a 770 (889)
.++|.+....+
T Consensus 228 ~~~a~~~~~~l 238 (243)
T PRK10866 228 NAQADKVAKII 238 (243)
T ss_pred hHHHHHHHHHH
Confidence 99988766544
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.9e-08 Score=107.70 Aligned_cols=112 Identities=16% Similarity=0.063 Sum_probs=77.6
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHH
Q 002716 515 LELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 594 (889)
Q Consensus 515 l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~ 594 (889)
+...|...+..|+|++|+..|+++++++|++. .++..+|.++...|++++|+..+ .
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~------~a~~~~a~~~~~~g~~~eAl~~~------------------~ 60 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNA------ELYADRAQANIKLGNFTEAVADA------------------N 60 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHH------------------H
Confidence 34456666677777777777777777777776 66667777777777777775554 7
Q ss_pred HHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 002716 595 QMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYD 650 (889)
Q Consensus 595 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~ 650 (889)
++++++|.++.+++++|.++..+|++++|+..|+++++.+|+++.+...++.+...
T Consensus 61 ~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 61 KAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred HHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777766666655443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.5e-06 Score=94.25 Aligned_cols=309 Identities=13% Similarity=0.043 Sum_probs=164.8
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHH
Q 002716 484 YRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVRE 563 (889)
Q Consensus 484 ~la~~~~~~g~~~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~ 563 (889)
..|.+..+.|..++|...|.+.-.. -++-.+|...|.+++|.++-+.-=++ + .+ ..++..+.-..
T Consensus 805 kvAvLAieLgMlEeA~~lYr~ckR~-------DLlNKlyQs~g~w~eA~eiAE~~DRi---H----Lr-~Tyy~yA~~Le 869 (1416)
T KOG3617|consen 805 KVAVLAIELGMLEEALILYRQCKRY-------DLLNKLYQSQGMWSEAFEIAETKDRI---H----LR-NTYYNYAKYLE 869 (1416)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH-------HHHHHHHHhcccHHHHHHHHhhccce---e----hh-hhHHHHHHHHH
Confidence 3455566677777777777766442 24455666667776666554321111 1 11 24555555555
Q ss_pred HhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHH
Q 002716 564 HIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVY 643 (889)
Q Consensus 564 ~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~ 643 (889)
..++.+.|+++|+..+. . .-.+-+++..+| .+++.|-+ . ..++..|..
T Consensus 870 ar~Di~~AleyyEK~~~-------h-afev~rmL~e~p--------------------~~~e~Yv~---~-~~d~~L~~W 917 (1416)
T KOG3617|consen 870 ARRDIEAALEYYEKAGV-------H-AFEVFRMLKEYP--------------------KQIEQYVR---R-KRDESLYSW 917 (1416)
T ss_pred hhccHHHHHHHHHhcCC-------h-HHHHHHHHHhCh--------------------HHHHHHHH---h-ccchHHHHH
Confidence 56666666555510000 0 000011122121 12211111 1 123455666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHH
Q 002716 644 EGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYV 723 (889)
Q Consensus 644 lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~ 723 (889)
-|..+...|+.+.|+.+|..|- -|+.+..+..-+| +.++|-.+.++.-+++ +-+.||..|.
T Consensus 918 WgqYlES~GemdaAl~~Y~~A~-------D~fs~VrI~C~qG-----------k~~kAa~iA~esgd~A-AcYhlaR~YE 978 (1416)
T KOG3617|consen 918 WGQYLESVGEMDAALSFYSSAK-------DYFSMVRIKCIQG-----------KTDKAARIAEESGDKA-ACYHLARMYE 978 (1416)
T ss_pred HHHHHhcccchHHHHHHHHHhh-------hhhhheeeEeecc-----------CchHHHHHHHhcccHH-HHHHHHHHhh
Confidence 6777778888888888888775 5666666666666 6666666666654443 6677888888
Q ss_pred HcCChHHHHHHHHHHHccCc------c----------------hHHHHHHHHHHHcC-CHHHHHHHHHHHHHHhccCHHH
Q 002716 724 DCGQLDLAADCYSNALKIRH------T----------------RAHQGLARVHFLKN-NKTTAYEEMTKLIKKARNNASA 780 (889)
Q Consensus 724 ~~g~~~~A~~~~~~al~~~p------~----------------~a~~~La~~~~~~g-~~~~A~~~~~~al~~~~~~~~~ 780 (889)
..|++.+|+..|.+|-.... + .-....|+.|...| +.+.|..+|.++=-...
T Consensus 979 n~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~k----- 1053 (1416)
T KOG3617|consen 979 NDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGK----- 1053 (1416)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHH-----
Confidence 88888888888877643321 1 11122344555555 55566555554411100
Q ss_pred HHHHHh-c-CCHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHhCCCHHHHHHHHHHH------Hhc--------------
Q 002716 781 YEKRSE-Y-CDRELTRADLEMVTQLDP-LRVYPYRYRAAVLMDSHKENEAIAELSRA------IAF-------------- 837 (889)
Q Consensus 781 ~~~~~~-~-~~~~~A~~~l~~al~l~p-~~~~~~~~la~~~~~~g~~~eA~~~l~ka------l~~-------------- 837 (889)
++.. + -+--.|+... +-.++| .++..+..-+..+....+|++|...+-.+ +.+
T Consensus 1054 --ALelAF~tqQf~aL~lI--a~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE 1129 (1416)
T KOG3617|consen 1054 --ALELAFRTQQFSALDLI--AKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAE 1129 (1416)
T ss_pred --HHHHHHhhcccHHHHHH--HHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHH
Confidence 0000 0 0001111111 123444 34556666677777888888887765443 311
Q ss_pred --------CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002716 838 --------KADL----HLLHLRAAFHEHTGDVLGALRDCRAA 867 (889)
Q Consensus 838 --------~p~~----~~l~l~a~~~~~~g~~~~A~~~~~~a 867 (889)
.|+. +++...+.+..++|.|..|-+-|.+|
T Consensus 1130 ~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1130 LMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred hcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 1111 34446778888889999888888766
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=8.8e-08 Score=105.71 Aligned_cols=112 Identities=12% Similarity=-0.014 Sum_probs=101.9
Q ss_pred HHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Q 002716 555 SQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA 634 (889)
Q Consensus 555 ~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 634 (889)
+...|......|++++|+..+ .++++.+|.++.+++.+|.++..+|++++|+..+++++.++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~------------------~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~ 66 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLY------------------TQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD 66 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHH------------------HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 344567888999999997777 99999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHc
Q 002716 635 ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADS 684 (889)
Q Consensus 635 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~ 684 (889)
|+++.+++.+|.+++..|++++|+..|++++.++|++ .+...++.+....
T Consensus 67 P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 67 PSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 7777776664443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=9.4e-06 Score=91.73 Aligned_cols=287 Identities=13% Similarity=0.036 Sum_probs=145.8
Q ss_pred HHHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHH
Q 002716 452 YQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAA 531 (889)
Q Consensus 452 ~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g~~~~A 531 (889)
..+.+.. ++|...|.+.-. |-.+-.+|...|.|++|.+..+.--.+. -...++..+..+...+|.+.|
T Consensus 810 AieLgMl---EeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiH-Lr~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 810 AIELGML---EEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIH-LRNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HHHHhhH---HHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhcccee-hhhhHHHHHHHHHhhccHHHH
Confidence 3444444 666666555432 2344556666777777766544311110 334556666666666666666
Q ss_pred HHHHHHH----------HHhCCCCcchhhh----HHHHHHHHHHHHHhhchhHHHHHHHhhhhccccccc----chHHHH
Q 002716 532 LCDVQAI----------LTLSPDYRMFEGR----VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI----GSLSVI 593 (889)
Q Consensus 532 ~~~~~~a----------l~~~p~~~~~~~~----~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~----~sl~~~ 593 (889)
+++|+++ |..+|.....+.+ -..|..-|......|+.+.|+.++.....|-+.--+ |....
T Consensus 878 leyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~k- 956 (1416)
T KOG3617|consen 878 LEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDK- 956 (1416)
T ss_pred HHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchH-
Confidence 6666654 3334433211110 023444455566666666666666443332111100 00100
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC------CC--cHHHHHH------------HHHHHHhcC-
Q 002716 594 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA------AS--DHERLVY------------EGWILYDTS- 652 (889)
Q Consensus 594 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~------p~--~~~~~~~------------lg~~~~~~g- 652 (889)
-..+....++..+.+.+|..|...|+..+|+..|.+|.... .. ..+-+.+ -+..|...|
T Consensus 957 Aa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~ 1036 (1416)
T KOG3617|consen 957 AARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGG 1036 (1416)
T ss_pred HHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcch
Confidence 12234456677788889999999999999998887764332 11 1112222 222333333
Q ss_pred CHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCch---hHHHHHHHHHHHHcCChH
Q 002716 653 HCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK---GQALNNLGSVYVDCGQLD 729 (889)
Q Consensus 653 ~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~---~~~~~~Lg~~y~~~g~~~ 729 (889)
+...|...|.+|=-+ ..|.-++-.. +--.|++...+.+.+ +..+..-+..+....+|+
T Consensus 1037 ~~~~AVmLYHkAGm~--------~kALelAF~t-----------qQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qye 1097 (1416)
T KOG3617|consen 1037 YAHKAVMLYHKAGMI--------GKALELAFRT-----------QQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYE 1097 (1416)
T ss_pred hhhHHHHHHHhhcch--------HHHHHHHHhh-----------cccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHH
Confidence 455555555443211 0110000000 111222222222222 445555666666667777
Q ss_pred HHHHHH------HHHHcc----------------Cc------c-----hHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002716 730 LAADCY------SNALKI----------------RH------T-----RAHQGLARVHFLKNNKTTAYEEMTKL 770 (889)
Q Consensus 730 ~A~~~~------~~al~~----------------~p------~-----~a~~~La~~~~~~g~~~~A~~~~~~a 770 (889)
+|...+ +.|+.+ .| + ..+..+|.+..++|.|..|-+-|+++
T Consensus 1098 kAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1098 KAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 776543 333322 11 1 67788999999999999999888877
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.2e-06 Score=85.93 Aligned_cols=238 Identities=13% Similarity=0.052 Sum_probs=164.4
Q ss_pred HHhhhHHHhcccHHHHHHHHHHHHHc-Ccc----hhHhhHHHHHhhcCCcHHHHHHHhhhhhccCcchhHHHHHhhcCCh
Q 002716 387 HQLGCVRLLRKEYDEAEHLFEAAVNA-GHI----YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEG 461 (889)
Q Consensus 387 ~~lG~~~~~~g~~~eA~~~~~~al~~-~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~~~~ 461 (889)
.+-|.-.+...++++|+....+.++- +.. ....-++.+...+|.+..++...-
T Consensus 10 ~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~---------------------- 67 (518)
T KOG1941|consen 10 IEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAV---------------------- 67 (518)
T ss_pred HHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHH----------------------
Confidence 34566777888999999888887752 111 111113333444444443332222
Q ss_pred hHHHHHHHHhhhcCCC--ChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHhcccHHHHHH
Q 002716 462 DKRWEDLDKATALDPT--LSYPYMYRASSLMTKQNVEAALAEINRILGFKL------ALECLELRFCFFLALEDYQAALC 533 (889)
Q Consensus 462 ~~A~~~~~~al~~dp~--~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p------~~~~l~~~a~~~~~~g~~~~A~~ 533 (889)
...+-+++.+.. ...+|..++..+....++.+++.+-.-.++... .......+|..+..++.++++++
T Consensus 68 ----sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Le 143 (518)
T KOG1941|consen 68 ----SQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALE 143 (518)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHH
Confidence 222222222111 135788888999888999999998888776643 22455668999999999999999
Q ss_pred HHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcC------C----CC
Q 002716 534 DVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD------A----PK 603 (889)
Q Consensus 534 ~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~------p----~~ 603 (889)
.|+++++...++.+...+......||.++.+.+++++|.-+. .++.++. . ..
T Consensus 144 sfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~------------------~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 144 SFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFP------------------CKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred HHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhh------------------HhHHHHHHhcCcCchhHHHH
Confidence 999999986665555555567888999999999999996665 4444332 1 12
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC------CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 002716 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA------SDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (889)
Q Consensus 604 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p------~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 668 (889)
..+.+.++..+..+|..-.|.++.+++.++.- -...-..-+|.+|...|+.+.|...|++|....
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 34567889999999999999999998876532 233456678999999999999999999988543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.4e-08 Score=79.87 Aligned_cols=67 Identities=12% Similarity=0.192 Sum_probs=64.8
Q ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 002716 603 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS-HCEEGLRKAEESIQMKR 669 (889)
Q Consensus 603 ~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g-~~~eA~~~~~~al~~~p 669 (889)
++..|..+|.++...|++++|+..|+++++.+|+++.+++++|.++..+| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 57789999999999999999999999999999999999999999999999 79999999999999987
|
... |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.5e-07 Score=102.85 Aligned_cols=143 Identities=12% Similarity=0.027 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHhcc---cHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhH----HHHHHHhhhhccccc
Q 002716 513 ECLELRFCFFLALE---DYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTI----ADCWLQLYDRWSSVD 585 (889)
Q Consensus 513 ~~l~~~a~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~----A~~~~~l~~~~~~~d 585 (889)
-.++++|.-+...+ ++..|+..|+++++++|++. .++..++.++.....+.. .....
T Consensus 340 y~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a------~a~A~la~~~~~~~~~~~~~~~~l~~a---------- 403 (517)
T PRK10153 340 LTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFT------YAQAEKALADIVRHSQQPLDEKQLAAL---------- 403 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHHHhcCCccHHHHHHH----------
Confidence 34456677766554 47889999999999999998 666666666655433321 00011
Q ss_pred ccchHHHHHHHHh--cCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002716 586 DIGSLSVIYQMLE--SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEE 663 (889)
Q Consensus 586 d~~sl~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 663 (889)
.....+++. .+|..+.++..+|..+...|++++|...+++++.++|+ ..++..+|.++...|++++|++.|++
T Consensus 404 ----~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 404 ----STELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred ----HHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 222355555 37778889999999999999999999999999999995 88999999999999999999999999
Q ss_pred HHhcCCChHHHHH
Q 002716 664 SIQMKRSFEAFFL 676 (889)
Q Consensus 664 al~~~p~~~a~~~ 676 (889)
|+.++|.++.++.
T Consensus 479 A~~L~P~~pt~~~ 491 (517)
T PRK10153 479 AFNLRPGENTLYW 491 (517)
T ss_pred HHhcCCCCchHHH
Confidence 9999999854443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.2e-06 Score=93.72 Aligned_cols=220 Identities=13% Similarity=0.067 Sum_probs=140.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCC--C----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 002716 606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAA--S----DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAY 679 (889)
Q Consensus 606 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p--~----~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~ 679 (889)
.+..-|..|...|++++|...|.++.+..- + -...+...+.++.+. ++++|+..|++++.
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~------------- 102 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIE------------- 102 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHH-------------
Confidence 345677888888999999999888765421 1 123344455555444 78888888877763
Q ss_pred HHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHc-CChHHHHHHHHHHHccCcc--------hHHHHH
Q 002716 680 ALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDC-GQLDLAADCYSNALKIRHT--------RAHQGL 750 (889)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~-g~~~~A~~~~~~al~~~p~--------~a~~~L 750 (889)
++...| ....| +..+.++|.+|... |++++|+++|++|++.... ..+..+
T Consensus 103 ~y~~~G-----------~~~~a----------A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~ 161 (282)
T PF14938_consen 103 IYREAG-----------RFSQA----------AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKA 161 (282)
T ss_dssp HHHHCT------------HHHH----------HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHhcC-----------cHHHH----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHH
Confidence 233334 22222 35788999999998 9999999999999987432 677789
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHH
Q 002716 751 ARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAE 830 (889)
Q Consensus 751 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~ 830 (889)
|.++...|+|++|++.|+++.....++..... .....+...+.+++..|+...|...
T Consensus 162 A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~-----------------------~~~~~~l~a~l~~L~~~D~v~A~~~ 218 (282)
T PF14938_consen 162 ADLYARLGRYEEAIEIYEEVAKKCLENNLLKY-----------------------SAKEYFLKAILCHLAMGDYVAARKA 218 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH-----------------------HHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHhhcccccch-----------------------hHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999888888764321110000 0012344556688889999999999
Q ss_pred HHHHHhcCCCH------HHHHHHHHHHHH--cCCHHHHHHHHHHHHccCCCCHHHHHHHHhhhc
Q 002716 831 LSRAIAFKADL------HLLHLRAAFHEH--TGDVLGALRDCRAALSVDPNDQEMLELHSRVYS 886 (889)
Q Consensus 831 l~kal~~~p~~------~~l~l~a~~~~~--~g~~~~A~~~~~~al~l~P~~~~~l~l~~~~~~ 886 (889)
+++.....|.. ..+..+-..+.. ...+++|+..|.+.-++| +|...++.++++
T Consensus 219 ~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld---~w~~~~l~~~k~ 279 (282)
T PF14938_consen 219 LERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLD---NWKTKMLLKIKK 279 (282)
T ss_dssp HHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS------HHHHHHHHHHHH
T ss_pred HHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccH---HHHHHHHHHHHh
Confidence 99999888752 222222233333 256777888877766665 477777776653
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.64 E-value=6e-07 Score=82.30 Aligned_cols=112 Identities=12% Similarity=0.032 Sum_probs=88.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCH
Q 002716 745 RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKE 824 (889)
Q Consensus 745 ~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~ 824 (889)
..++.+|..+...|++++|++.+.+++...|++ |....+++.+|.++.+.|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------------------~~~~~~~~~l~~~~~~~~~~ 55 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKS---------------------------TYAPNAHYWLGEAYYAQGKY 55 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc---------------------------cccHHHHHHHHHHHHhhccH
Confidence 356778888888888866666666665554421 12256788899999999999
Q ss_pred HHHHHHHHHHHhcCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHh
Q 002716 825 NEAIAELSRAIAFKADL----HLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSR 883 (889)
Q Consensus 825 ~eA~~~l~kal~~~p~~----~~l~l~a~~~~~~g~~~~A~~~~~~al~l~P~~~~~l~l~~~ 883 (889)
++|+..+++++...|+. ..+...+.++..+|++++|+..++++++..|+++.+.+...|
T Consensus 56 ~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 118 (119)
T TIGR02795 56 ADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQKR 118 (119)
T ss_pred HHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHHhc
Confidence 99999999999988873 456688888899999999999999999999999887766544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1e-06 Score=86.97 Aligned_cols=87 Identities=14% Similarity=0.056 Sum_probs=39.5
Q ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHH
Q 002716 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAA 554 (889)
Q Consensus 479 ~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p~----~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a 554 (889)
..+++.+|..+...|++++|+..|++++...|+ ...+..+|.++...|++++|+..+++++...|++. .+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~ 108 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQP------SA 108 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH------HH
Confidence 334444455555555555555555554443331 23444444444444444444444444444444444 34
Q ss_pred HHHHHHHHHHhhchhHH
Q 002716 555 SQLHMLVREHIDNWTIA 571 (889)
Q Consensus 555 ~~~lg~~~~~~~~~~~A 571 (889)
+..+|.++...|+...+
T Consensus 109 ~~~lg~~~~~~g~~~~a 125 (172)
T PRK02603 109 LNNIAVIYHKRGEKAEE 125 (172)
T ss_pred HHHHHHHHHHcCChHhH
Confidence 44444444444443333
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.9e-07 Score=82.40 Aligned_cols=32 Identities=19% Similarity=0.162 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc
Q 002716 606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASD 637 (889)
Q Consensus 606 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~ 637 (889)
+++.+|.++...|++++|...++++++..|++
T Consensus 78 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 78 ALLKLGMSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 34444444444444444444444444444443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.4e-07 Score=88.59 Aligned_cols=82 Identities=12% Similarity=0.031 Sum_probs=72.0
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHH
Q 002716 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS---DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAY 679 (889)
Q Consensus 604 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~---~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~ 679 (889)
...++.+|.++...|++++|+..|++++...|+ .+.++.++|.++...|++++|+..+++++.++|.. ..+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 567789999999999999999999999988765 34589999999999999999999999999999988 77777777
Q ss_pred HHHHcC
Q 002716 680 ALADSS 685 (889)
Q Consensus 680 ~~~~~~ 685 (889)
++...+
T Consensus 115 i~~~~~ 120 (168)
T CHL00033 115 ICHYRG 120 (168)
T ss_pred HHHHhh
Confidence 665554
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.7e-07 Score=78.92 Aligned_cols=99 Identities=16% Similarity=0.171 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Q 002716 554 ASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 633 (889)
Q Consensus 554 a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 633 (889)
+++.+|.++...|++++|..++ +++++..|.+..++..+|.++...|++++|+..++++++.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 63 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYY------------------EKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL 63 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHH------------------HHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4677889999999999997777 9999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002716 634 AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (889)
Q Consensus 634 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 670 (889)
.|.+...+..+|.++...|++++|...+.++++..|+
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 64 DPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred CCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999999999999987764
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.5e-06 Score=82.36 Aligned_cols=194 Identities=11% Similarity=-0.026 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 002716 553 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 632 (889)
Q Consensus 553 ~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 632 (889)
..++-.|..|-..|-+.-|..-| .+++.+.|..+.++..+|..+...|+++.|.+.|+..++
T Consensus 66 ~l~fERGvlYDSlGL~~LAR~Df------------------tQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E 127 (297)
T COG4785 66 QLLFERGVLYDSLGLRALARNDF------------------SQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE 127 (297)
T ss_pred HHHHHhcchhhhhhHHHHHhhhh------------------hhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc
Confidence 45666778888888888885445 999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchh
Q 002716 633 HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKG 712 (889)
Q Consensus 633 ~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~ 712 (889)
++|.+.-+..+.|..++.-|++.-|.+.+.+-.+.+|+++.....-++ ..+..++....+. ..+++.+.-+..+.-.
T Consensus 128 LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl-~E~k~dP~~A~tn--L~qR~~~~d~e~WG~~ 204 (297)
T COG4785 128 LDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYL-NEQKLDPKQAKTN--LKQRAEKSDKEQWGWN 204 (297)
T ss_pred cCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHH-HHhhCCHHHHHHH--HHHHHHhccHhhhhHH
Confidence 999999999999999999999999999999999999998322222222 2223222211111 2222222222211111
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCcc---------hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Q 002716 713 QALNNLGSVYVDCGQLDLAADCYSNALKIRHT---------RAHQGLARVHFLKNNKTTAYEEMTKLIKKAR 775 (889)
Q Consensus 713 ~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~---------~a~~~La~~~~~~g~~~~A~~~~~~al~~~~ 775 (889)
.+-+.| |+..+ ...++++..-..+ +++..||..+...|+.++|...|+-++..+-
T Consensus 205 iV~~yL-------gkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 205 IVEFYL-------GKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHH-------hhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 112222 33221 1122332222211 7888999999999999999999988876544
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=2e-06 Score=93.67 Aligned_cols=140 Identities=11% Similarity=-0.012 Sum_probs=113.2
Q ss_pred HHHHHHHHHhcc---cHHHHHHHHHHHH---HhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccc--cc
Q 002716 515 LELRFCFFLALE---DYQAALCDVQAIL---TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSV--DD 586 (889)
Q Consensus 515 l~~~a~~~~~~g---~~~~A~~~~~~al---~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~--dd 586 (889)
++++|...+..+ ..+.|+..|.+++ .++|+.. .++..++.++...-. ..|+.. +-
T Consensus 258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a------~a~~~lA~~h~~~~~-----------~g~~~~~~~~ 320 (458)
T PRK11906 258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKT------ECYCLLAECHMSLAL-----------HGKSELELAA 320 (458)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccH------HHHHHHHHHHHHHHH-----------hcCCCchHHH
Confidence 466676665444 5677888899999 8888888 677777777655311 011110 01
Q ss_pred cchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002716 587 IGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (889)
Q Consensus 587 ~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 666 (889)
..++....++++++|.++.++..+|.++...++++.|...|++|+.++|+.+.+++..|++..-.|+.++|++.++++++
T Consensus 321 ~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 321 QKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 12245559999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCh
Q 002716 667 MKRSF 671 (889)
Q Consensus 667 ~~p~~ 671 (889)
++|.-
T Consensus 401 LsP~~ 405 (458)
T PRK11906 401 LEPRR 405 (458)
T ss_pred cCchh
Confidence 99987
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.001 Score=72.03 Aligned_cols=381 Identities=13% Similarity=0.087 Sum_probs=237.9
Q ss_pred hhHHHHHHHHHhcc--CHHHHHHHHHHHHcCCC----CHHHHHHHHHH-HHhcccHHHHHHHHHHHHHhCCCCcch-hhh
Q 002716 480 YPYMYRASSLMTKQ--NVEAALAEINRILGFKL----ALECLELRFCF-FLALEDYQAALCDVQAILTLSPDYRMF-EGR 551 (889)
Q Consensus 480 ~a~~~la~~~~~~g--~~~~Al~~l~kal~~~p----~~~~l~~~a~~-~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~ 551 (889)
.++..+|..+...| +..++++.++......| ...+...+|.+ +....+.+.|...++++..+...-+.+ ..+
T Consensus 8 ~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvK 87 (629)
T KOG2300|consen 8 EALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVK 87 (629)
T ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhh
Confidence 35677888888888 89999999999999988 34445555554 566889999999999998776544444 445
Q ss_pred HHHHHHHHHHHHHhh-chhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCCh----HHHHHHHHHHHHhCCHHHHHHH
Q 002716 552 VAASQLHMLVREHID-NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG----VLYFRQSLLLLRLNCPEAAMRS 626 (889)
Q Consensus 552 ~~a~~~lg~~~~~~~-~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~ 626 (889)
.++..+|+.+|.+.. .+..|...+ .++++.....+ ...+.++.++.-..++..|++.
T Consensus 88 f~a~SlLa~lh~~~~~s~~~~KalL------------------rkaielsq~~p~wsckllfQLaql~~idkD~~sA~el 149 (629)
T KOG2300|consen 88 FQAASLLAHLHHQLAQSFPPAKALL------------------RKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALEL 149 (629)
T ss_pred hHHHHHHHHHHHHhcCCCchHHHHH------------------HHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHH
Confidence 578889999999888 667775555 88888876655 3557889999999999999988
Q ss_pred HHHHHHcCCCcH----HHHHH--HHHHHHhcCCHH---HHHHHHHHHHhcC---CCh-----HHHHHHHHHHHHcCCCCC
Q 002716 627 LQLARQHAASDH----ERLVY--EGWILYDTSHCE---EGLRKAEESIQMK---RSF-----EAFFLKAYALADSSQDSS 689 (889)
Q Consensus 627 l~~al~~~p~~~----~~~~~--lg~~~~~~g~~~---eA~~~~~~al~~~---p~~-----~a~~~la~~~~~~~~~~~ 689 (889)
+.--......-. .+.+. .+.++....+.. .+.....++.+.. |.. ..|..+-..+....-..+
T Consensus 150 Lavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~r 229 (629)
T KOG2300|consen 150 LAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVR 229 (629)
T ss_pred HhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchh
Confidence 543222211111 12222 233444444433 4444444444332 222 223333334433332333
Q ss_pred cchhhhhhHHHHhcchhhh---------Cch------------hHHHHHHHHHH--HHcCChHHHHHHHHHHHccCcc--
Q 002716 690 CSSTVVSLLEDALKCPSDR---------LRK------------GQALNNLGSVY--VDCGQLDLAADCYSNALKIRHT-- 744 (889)
Q Consensus 690 ~~~~~~~~~~~Al~~~~~~---------~~~------------~~~~~~Lg~~y--~~~g~~~~A~~~~~~al~~~p~-- 744 (889)
......+++++.+...... ..+ ..++..+-.+- .-.|-+++|.++-++++.....
T Consensus 230 t~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklk 309 (629)
T KOG2300|consen 230 TVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLK 309 (629)
T ss_pred hhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcc
Confidence 3444455555555544431 000 11111111111 2346677788777777654211
Q ss_pred --------------hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc---c-------CHHHHHHHHhc----CCHHHHHHH
Q 002716 745 --------------RAHQGLARVHFLKNNKTTAYEEMTKLIKKAR---N-------NASAYEKRSEY----CDRELTRAD 796 (889)
Q Consensus 745 --------------~a~~~La~~~~~~g~~~~A~~~~~~al~~~~---~-------~~~~~~~~~~~----~~~~~A~~~ 796 (889)
..+..++.+-.-.|++.+|++....+.+... . .+.+...+|.| +.++.|...
T Consensus 310 q~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~h 389 (629)
T KOG2300|consen 310 QADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFH 389 (629)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHH
Confidence 3455577778889999999998887766543 1 23445566666 688999999
Q ss_pred HHHHHhcCCC-C--hHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC--------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 002716 797 LEMVTQLDPL-R--VYPYRYRAAVLMDSHKENEAIAELSRAIAFKAD--------LHLLHLRAAFHEHTGDVLGALRDCR 865 (889)
Q Consensus 797 l~~al~l~p~-~--~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~--------~~~l~l~a~~~~~~g~~~~A~~~~~ 865 (889)
|..|.++... + +....++|.+|...|+-+.-.+.++..-..+.. ...++..|.+...++++.||....+
T Consensus 390 f~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~ 469 (629)
T KOG2300|consen 390 FIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLR 469 (629)
T ss_pred HHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 9999887433 2 345567899999988766555554443222111 1344466777777799999999999
Q ss_pred HHHccCCCCHHHHH
Q 002716 866 AALSVDPNDQEMLE 879 (889)
Q Consensus 866 ~al~l~P~~~~~l~ 879 (889)
+.|+.. +..+...
T Consensus 470 e~Lkma-naed~~r 482 (629)
T KOG2300|consen 470 ETLKMA-NAEDLNR 482 (629)
T ss_pred HHHhhc-chhhHHH
Confidence 999987 5444443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.2e-07 Score=88.47 Aligned_cols=86 Identities=13% Similarity=0.110 Sum_probs=76.0
Q ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHH
Q 002716 600 DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD---HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFF 675 (889)
Q Consensus 600 ~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~ 675 (889)
.+.....++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+..++++++..|++ .++.
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 110 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN 110 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 34667788999999999999999999999999887653 5689999999999999999999999999999988 7777
Q ss_pred HHHHHHHHcC
Q 002716 676 LKAYALADSS 685 (889)
Q Consensus 676 ~la~~~~~~~ 685 (889)
.+|.++...+
T Consensus 111 ~lg~~~~~~g 120 (172)
T PRK02603 111 NIAVIYHKRG 120 (172)
T ss_pred HHHHHHHHcC
Confidence 8888777766
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.8e-06 Score=92.41 Aligned_cols=138 Identities=13% Similarity=0.012 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHhc-ccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHH
Q 002716 513 ECLELRFCFFLAL-EDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 591 (889)
Q Consensus 513 ~~l~~~a~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~ 591 (889)
.++..+|.+|... |++++|+..|++++...............+..++.++...|+|++|.+.+
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~---------------- 178 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIY---------------- 178 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHH----------------
Confidence 3455568999888 99999999999999875444444444467778899999999999997777
Q ss_pred HHHHHHhcCCC----C---hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcH-----HHHHHHHHHHH--hcCCHHHH
Q 002716 592 VIYQMLESDAP----K---GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH-----ERLVYEGWILY--DTSHCEEG 657 (889)
Q Consensus 592 ~~~~al~~~p~----~---~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~-----~~~~~lg~~~~--~~g~~~eA 657 (889)
++.....-. . ...++..+.+++..|++..|.+.+++....+|... .....+-..+- ....+.+|
T Consensus 179 --e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~a 256 (282)
T PF14938_consen 179 --EEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEA 256 (282)
T ss_dssp --HHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHH
T ss_pred --HHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 666553211 1 13456788899999999999999999998887532 22223333332 23457777
Q ss_pred HHHHHHHHhcC
Q 002716 658 LRKAEESIQMK 668 (889)
Q Consensus 658 ~~~~~~al~~~ 668 (889)
+..|...-+++
T Consensus 257 v~~~d~~~~ld 267 (282)
T PF14938_consen 257 VAEYDSISRLD 267 (282)
T ss_dssp CHHHTTSS---
T ss_pred HHHHcccCccH
Confidence 77777655444
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.4e-07 Score=77.39 Aligned_cols=66 Identities=17% Similarity=0.226 Sum_probs=61.8
Q ss_pred ChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHhCC
Q 002716 478 LSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALE-DYQAALCDVQAILTLSP 543 (889)
Q Consensus 478 ~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g-~~~~A~~~~~~al~~~p 543 (889)
++..|..+|.+++..|++++|+..|++++..+| +..++..+|.++..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 567889999999999999999999999999999 8999999999999999 89999999999999988
|
... |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.6e-06 Score=92.84 Aligned_cols=159 Identities=13% Similarity=0.105 Sum_probs=135.0
Q ss_pred HHHHHHHHHhcc---CHHHHHHHHHHHH---cCCC-CHHHHHHHHHHHHhc---------ccHHHHHHHHHHHHHhCCCC
Q 002716 482 YMYRASSLMTKQ---NVEAALAEINRIL---GFKL-ALECLELRFCFFLAL---------EDYQAALCDVQAILTLSPDY 545 (889)
Q Consensus 482 ~~~la~~~~~~g---~~~~Al~~l~kal---~~~p-~~~~l~~~a~~~~~~---------g~~~~A~~~~~~al~~~p~~ 545 (889)
++.+|...+..+ ..+.|+..|.+++ .++| ...++-.++++++.. .+..+|.+..+++++++|.+
T Consensus 258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D 337 (458)
T PRK11906 258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD 337 (458)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 366777665544 4567888999999 8888 788888888887654 35678889999999999999
Q ss_pred cchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHH
Q 002716 546 RMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMR 625 (889)
Q Consensus 546 ~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 625 (889)
+ .++..+|.+....++++.|..+| ++++.++|+.+.+++..|.+....|+.++|.+
T Consensus 338 a------~a~~~~g~~~~~~~~~~~a~~~f------------------~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~ 393 (458)
T PRK11906 338 G------KILAIMGLITGLSGQAKVSHILF------------------EQAKIHSTDIASLYYYRALVHFHNEKIEEARI 393 (458)
T ss_pred H------HHHHHHHHHHHhhcchhhHHHHH------------------HHHhhcCCccHHHHHHHHHHHHHcCCHHHHHH
Confidence 9 89999999999999999997777 99999999999999999999999999999999
Q ss_pred HHHHHHHcCCCcHHHHHHHHHH-HHhcCCHHHHHHHHHHH
Q 002716 626 SLQLARQHAASDHERLVYEGWI-LYDTSHCEEGLRKAEES 664 (889)
Q Consensus 626 ~l~~al~~~p~~~~~~~~lg~~-~~~~g~~~eA~~~~~~a 664 (889)
.++++++++|....+-...-++ .|...-.++|+..|-+-
T Consensus 394 ~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (458)
T PRK11906 394 CIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKE 433 (458)
T ss_pred HHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhc
Confidence 9999999999877766666666 56677788888887653
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.2e-06 Score=89.99 Aligned_cols=120 Identities=10% Similarity=-0.004 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHH
Q 002716 528 YQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLY 607 (889)
Q Consensus 528 ~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~ 607 (889)
.+.-+.-++.-+..+|++. +.|..||.+|...|+++.|...| .+++++.|+++..+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~------egW~~Lg~~ym~~~~~~~A~~AY------------------~~A~rL~g~n~~~~ 193 (287)
T COG4235 138 MEALIARLETHLQQNPGDA------EGWDLLGRAYMALGRASDALLAY------------------RNALRLAGDNPEIL 193 (287)
T ss_pred HHHHHHHHHHHHHhCCCCc------hhHHHHHHHHHHhcchhHHHHHH------------------HHHHHhCCCCHHHH
Confidence 4445566777888899999 89999999999999999995555 99999999999999
Q ss_pred HHHHHHHHHhCC---HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh
Q 002716 608 FRQSLLLLRLNC---PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (889)
Q Consensus 608 ~~la~~~~~~g~---~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 671 (889)
..+|.++..+.+ ..++...+++++..+|.+..+++.+|..++++|++.+|+..++..++..|.+
T Consensus 194 ~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 194 LGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 999988877553 4678889999999999999999999999999999999999999999988776
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.9e-07 Score=91.41 Aligned_cols=120 Identities=13% Similarity=0.004 Sum_probs=107.8
Q ss_pred hHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcc---cHHHHHHHHHH
Q 002716 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALE---DYQAALCDVQA 537 (889)
Q Consensus 462 ~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g---~~~~A~~~~~~ 537 (889)
+.-+.-++..+..||+++..|..+|.+|+..|++..|...|.+++++.| +++.+...|.++..+. ...++...+++
T Consensus 139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~ 218 (287)
T COG4235 139 EALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQ 218 (287)
T ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 5667778889999999999999999999999999999999999999999 9999999998876554 46789999999
Q ss_pred HHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChH
Q 002716 538 ILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV 605 (889)
Q Consensus 538 al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~ 605 (889)
++..||++. .+..+||..+...|+|.+|...+ +.++...|.+..
T Consensus 219 al~~D~~~i------ral~lLA~~afe~g~~~~A~~~W------------------q~lL~~lp~~~~ 262 (287)
T COG4235 219 ALALDPANI------RALSLLAFAAFEQGDYAEAAAAW------------------QMLLDLLPADDP 262 (287)
T ss_pred HHhcCCccH------HHHHHHHHHHHHcccHHHHHHHH------------------HHHHhcCCCCCc
Confidence 999999999 99999999999999999995555 899988876643
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.58 E-value=6.6e-07 Score=77.35 Aligned_cols=97 Identities=22% Similarity=0.161 Sum_probs=61.6
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHH
Q 002716 515 LELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 594 (889)
Q Consensus 515 l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~ 594 (889)
+..+|.++...|++++|+..++++++..|.+. .++..+|.++...+++++|..++ +
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~~~~------------------~ 58 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNA------DAYYNLAAAYYKLGKYEEALEDY------------------E 58 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH------HHHHHHHHHHHHHHHHHHHHHHH------------------H
Confidence 44556666666666666666666666666655 45566666666666666665555 6
Q ss_pred HHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Q 002716 595 QMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA 635 (889)
Q Consensus 595 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p 635 (889)
+++...|.+..++..+|.++...|+++.|...+.++++..|
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 59 KALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 66666666666666666666666666666666666665554
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.4e-06 Score=81.59 Aligned_cols=120 Identities=14% Similarity=0.057 Sum_probs=90.5
Q ss_pred hcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCC
Q 002716 524 ALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK 603 (889)
Q Consensus 524 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~ 603 (889)
..++...+...+++++..+|+.+... .+...++.++...|++++|...| ++++...|+.
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~---~A~l~lA~~~~~~g~~~~A~~~l------------------~~~~~~~~d~ 81 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAA---LAALQLAKAAYEQGDYDEAKAAL------------------EKALANAPDP 81 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHH---HHHHHHHHHHHHCCCHHHHHHHH------------------HHHHhhCCCH
Confidence 57778888778888888888774221 36667788888888888886666 7777766544
Q ss_pred ---hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002716 604 ---GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI 665 (889)
Q Consensus 604 ---~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al 665 (889)
..+.+++|.++...|++++|+..++. +...+-.+.++..+|.++...|++++|+..|++++
T Consensus 82 ~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 82 ELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 45677888888999999999988866 33344556777888999999999999999888874
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.1e-06 Score=80.85 Aligned_cols=121 Identities=15% Similarity=0.066 Sum_probs=77.0
Q ss_pred HHHHhCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCC
Q 002716 613 LLLRLNCPEAAMRSLQLARQHAASD---HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSS 689 (889)
Q Consensus 613 ~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~ 689 (889)
.....++...+...++...+..|+. ..+.+.+|.+++..|++++|...|+.++...|+....
T Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~--------------- 84 (145)
T PF09976_consen 20 QALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELK--------------- 84 (145)
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHH---------------
Confidence 3346788888888889888888887 4567788999999999999999999998766554100
Q ss_pred cchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc-hHHHHHHHHHHHcCCHHHHHHHHH
Q 002716 690 CSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-RAHQGLARVHFLKNNKTTAYEEMT 768 (889)
Q Consensus 690 ~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~-~a~~~La~~~~~~g~~~~A~~~~~ 768 (889)
..+...|+.++...|++++|+..++..-..... .++..+|.++...|++++|...|+
T Consensus 85 ----------------------~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 85 ----------------------PLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred ----------------------HHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 023444555555555555555555442111111 444445555555555555555555
Q ss_pred HH
Q 002716 769 KL 770 (889)
Q Consensus 769 ~a 770 (889)
++
T Consensus 143 ~A 144 (145)
T PF09976_consen 143 KA 144 (145)
T ss_pred Hh
Confidence 54
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00034 Score=78.48 Aligned_cols=242 Identities=13% Similarity=0.058 Sum_probs=130.2
Q ss_pred HHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHcCcchhHhhHHHHHhhcCCcHHHHHHHhhhhhccCcchhHHHHHhhc
Q 002716 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY 458 (889)
Q Consensus 379 ~~~~~~a~~~lG~~~~~~g~~~eA~~~~~~al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~ 458 (889)
..-+...|-.-|.+|-.-.++++|.++|++.-..+. ...+||..+- .+++..-..-|.-....+.+
T Consensus 657 alik~elydkagdlfeki~d~dkale~fkkgdaf~k---aielarfafp-----------~evv~lee~wg~hl~~~~q~ 722 (1636)
T KOG3616|consen 657 ALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGK---AIELARFAFP-----------EEVVKLEEAWGDHLEQIGQL 722 (1636)
T ss_pred HHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHH---HHHHHHhhCc-----------HHHhhHHHHHhHHHHHHHhH
Confidence 344455666778888888888888888876422111 1123322110 01111111123334445556
Q ss_pred CChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 002716 459 CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAI 538 (889)
Q Consensus 459 ~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~a 538 (889)
+.|+..|-+|--+ ..--......++|.+|+..++.+-..+.....+-..+.-|...|+|+.|.+.|.++
T Consensus 723 ---daainhfiea~~~--------~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~ 791 (1636)
T KOG3616|consen 723 ---DAAINHFIEANCL--------IKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA 791 (1636)
T ss_pred ---HHHHHHHHHhhhH--------HHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc
Confidence 6666666554221 11123445677888999888876655555666777788888999999998888765
Q ss_pred HHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhC
Q 002716 539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLN 618 (889)
Q Consensus 539 l~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g 618 (889)
=. ......+|.+.|+|.+|.++...+- ...+..+ ..+.++-.++..- -+..--.+|...|
T Consensus 792 ~~--------------~~dai~my~k~~kw~da~kla~e~~---~~e~t~~-~yiakaedldehg--kf~eaeqlyiti~ 851 (1636)
T KOG3616|consen 792 DL--------------FKDAIDMYGKAGKWEDAFKLAEECH---GPEATIS-LYIAKAEDLDEHG--KFAEAEQLYITIG 851 (1636)
T ss_pred ch--------------hHHHHHHHhccccHHHHHHHHHHhc---CchhHHH-HHHHhHHhHHhhc--chhhhhheeEEcc
Confidence 21 1111266777888888855441111 1111110 0111111111100 0111122344455
Q ss_pred CHHHHHHHHHHH----------HHcCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002716 619 CPEAAMRSLQLA----------RQHAAS-DHERLVYEGWILYDTSHCEEGLRKAEESI 665 (889)
Q Consensus 619 ~~~~A~~~l~~a----------l~~~p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al 665 (889)
.++.|+..|.+. -+..|+ -.+.+..+|.-+...|+...|...|-++-
T Consensus 852 ~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 852 EPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG 909 (1636)
T ss_pred CchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh
Confidence 556666665542 122332 34567788888999999999998887764
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.002 Score=74.90 Aligned_cols=406 Identities=13% Similarity=0.029 Sum_probs=221.8
Q ss_pred HhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHH
Q 002716 455 RSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALC 533 (889)
Q Consensus 455 ~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~ 533 (889)
.+.+ ++|+....+.++..|+...+....|..+.++|+.++|...++..-...+ +...+..+-.+|..+|.+++|..
T Consensus 22 ~~qf---kkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 22 SSQF---KKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hHHH---HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 3455 7888888888888888888888888888888888888876666555555 66677777888888888888888
Q ss_pred HHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhH----HHHHHHhh-----hhcccc----------cccc------
Q 002716 534 DVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTI----ADCWLQLY-----DRWSSV----------DDIG------ 588 (889)
Q Consensus 534 ~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~----A~~~~~l~-----~~~~~~----------dd~~------ 588 (889)
.|++++..+|+ . +.+..+-.+|.+.+.|.+ |++.++.+ --|+-. +...
T Consensus 99 ~Ye~~~~~~P~-e------ell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 99 LYERANQKYPS-E------ELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHhhCCc-H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 88888888888 3 344444455555554443 44444322 123110 0000
Q ss_pred -hHHHHHHHHhcC-CCChHH-HHHHHHHHHHhCCHHHHHHHHHH--HHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002716 589 -SLSVIYQMLESD-APKGVL-YFRQSLLLLRLNCPEAAMRSLQL--ARQHAASDHERLVYEGWILYDTSHCEEGLRKAEE 663 (889)
Q Consensus 589 -sl~~~~~al~~~-p~~~~~-~~~la~~~~~~g~~~~A~~~l~~--al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 663 (889)
+-...++.++.. +-...+ ....-.++..+|++++|...+.. +-...+.+.......+..+...+++.+-.+...+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 112333444443 211111 11223456678999999998832 3334444555555666777888999999999999
Q ss_pred HHhcCCCh-HHHHH-HHHHHHHcCCCCCcc-hhhhhhHHHHhcchhhh-----CchhHHHHHHHHHHHHcCChHHHHHHH
Q 002716 664 SIQMKRSF-EAFFL-KAYALADSSQDSSCS-STVVSLLEDALKCPSDR-----LRKGQALNNLGSVYVDCGQLDLAADCY 735 (889)
Q Consensus 664 al~~~p~~-~a~~~-la~~~~~~~~~~~~~-~~~~~~~~~Al~~~~~~-----~~~~~~~~~Lg~~y~~~g~~~~A~~~~ 735 (889)
++..++++ ..+.. .-.++......+... ......++...+...+. ..+-.++..+-.-+..-|+.+++...|
T Consensus 252 Ll~k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y 331 (932)
T KOG2053|consen 252 LLEKGNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYY 331 (932)
T ss_pred HHHhCCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHH
Confidence 99888885 22222 122222221111110 01111222222222221 222233444444445667888777666
Q ss_pred HHHHccCcc--------------------------------------hHHHHHHHHHHHcCCH-----HHHHHHHHHHHH
Q 002716 736 SNALKIRHT--------------------------------------RAHQGLARVHFLKNNK-----TTAYEEMTKLIK 772 (889)
Q Consensus 736 ~~al~~~p~--------------------------------------~a~~~La~~~~~~g~~-----~~A~~~~~~al~ 772 (889)
-+-+...|. ..+...-.+....|.+ +.-...++++..
T Consensus 332 ~~kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~ 411 (932)
T KOG2053|consen 332 FKKFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKL 411 (932)
T ss_pred HHHhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHH
Confidence 543333222 0011111122222321 111222222221
Q ss_pred Hhc--------------cCHHHHHHHH------------hcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHH
Q 002716 773 KAR--------------NNASAYEKRS------------EYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENE 826 (889)
Q Consensus 773 ~~~--------------~~~~~~~~~~------------~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~e 826 (889)
... ..+..+..++ ..+..-+|+-.++..+..+|.+...-..+-.+|.-.|-+..
T Consensus 412 ~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~ 491 (932)
T KOG2053|consen 412 TYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPD 491 (932)
T ss_pred HHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChh
Confidence 111 1111111111 01355678888888888888888888888888888888888
Q ss_pred HHHHHHHHHhcCC-C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 002716 827 AIAELSRAIAFKA-D-LHLLHLRAAFHEHTGDVLGALRDCRAALSVD 871 (889)
Q Consensus 827 A~~~l~kal~~~p-~-~~~l~l~a~~~~~~g~~~~A~~~~~~al~l~ 871 (889)
|.+.|+.. .++. . +..-++.-..+...|++..|...+...+...
T Consensus 492 a~~~y~tL-dIK~IQ~DTlgh~~~~~~~t~g~~~~~s~~~~~~lkfy 537 (932)
T KOG2053|consen 492 AYELYKTL-DIKNIQTDTLGHLIFRRAETSGRSSFASNTFNEHLKFY 537 (932)
T ss_pred HHHHHHhc-chHHhhhccchHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 88887643 2221 1 1222344444555577777777777777654
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.6e-06 Score=85.18 Aligned_cols=102 Identities=15% Similarity=-0.021 Sum_probs=51.2
Q ss_pred cCHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchh
Q 002716 493 QNVEAALAEINRILGFKL---ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWT 569 (889)
Q Consensus 493 g~~~~Al~~l~kal~~~p---~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~ 569 (889)
+.|..+...+...++..+ ...++...|.++..+|++++|+..|++++.+.|+.. ....++..+|.++...|+++
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~---~~~~~~~~lg~~~~~~g~~~ 89 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY---DRSYILYNIGLIHTSNGEHT 89 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccch---hhHHHHHHHHHHHHHcCCHH
Confidence 334555555555444433 344555556666666666666666666655544322 00124455555555555555
Q ss_pred HHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHH
Q 002716 570 IADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLL 615 (889)
Q Consensus 570 ~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~ 615 (889)
+|+..+ ++++..+|.....+..+|.++.
T Consensus 90 eA~~~~------------------~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 90 KALEYY------------------FQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHH------------------HHHHHhCcCcHHHHHHHHHHHH
Confidence 554444 5555555555555555555544
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00067 Score=71.49 Aligned_cols=221 Identities=17% Similarity=0.016 Sum_probs=154.1
Q ss_pred HHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHcCCCCCcc
Q 002716 615 LRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM---KRSFEAFFLKAYALADSSQDSSCS 691 (889)
Q Consensus 615 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~p~~~a~~~la~~~~~~~~~~~~~ 691 (889)
.+.|..+.|.++-+.+....|.-+.+....-......|+++.|++..+..... .++. +-...+.++
T Consensus 165 qr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~-aeR~rAvLL---------- 233 (531)
T COG3898 165 QRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDV-AERSRAVLL---------- 233 (531)
T ss_pred HhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhh-HHHHHHHHH----------
Confidence 45677777888888887777877777666666667778888888777655421 1111 111111111
Q ss_pred hhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--hHHHHHHHHHHHcCCHHHHHHHHHH
Q 002716 692 STVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTK 769 (889)
Q Consensus 692 ~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~ 769 (889)
..-+.. .-..+...|...-.+++++.|+ .+-..-++.++..|+..++-..++.
T Consensus 234 ------------------------tAkA~s-~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~ 288 (531)
T COG3898 234 ------------------------TAKAMS-LLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILET 288 (531)
T ss_pred ------------------------HHHHHH-HhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHH
Confidence 111111 1234567788888888888888 6666778888999999999999998
Q ss_pred HHHHhc-cCHHHHHHHHhcCCHHHH-HHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHH
Q 002716 770 LIKKAR-NNASAYEKRSEYCDRELT-RADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR 847 (889)
Q Consensus 770 al~~~~-~~~~~~~~~~~~~~~~~A-~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~l~l~ 847 (889)
+.+..| +..+..+.+..-|+.... .+-..+...+.|++.+.....+..-...|++..|...-+.+....|....+.++
T Consensus 289 aWK~ePHP~ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLl 368 (531)
T COG3898 289 AWKAEPHPDIALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLL 368 (531)
T ss_pred HHhcCCChHHHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHH
Confidence 888877 222333333333432221 223344456789999999999999999999999999999999999998888888
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHccC
Q 002716 848 AAFHEHT-GDVLGALRDCRAALSVD 871 (889)
Q Consensus 848 a~~~~~~-g~~~~A~~~~~~al~l~ 871 (889)
+.+-... ||-.++..++-++++--
T Consensus 369 AdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 369 ADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HHHHhhccCchHHHHHHHHHHhcCC
Confidence 8887766 99999999999999863
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.5e-06 Score=92.31 Aligned_cols=97 Identities=15% Similarity=0.009 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 002716 553 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 632 (889)
Q Consensus 553 ~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 632 (889)
.++.+++.++.+++.|.+|+++. .++|+.+|+|..++|+.|.++..+|+++.|+..|+++++
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c------------------~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESC------------------NKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHH------------------HHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 46778889999999999998888 999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHhcCCHHHH-HHHHHHHHhc
Q 002716 633 HAASDHERLVYEGWILYDTSHCEEG-LRKAEESIQM 667 (889)
Q Consensus 633 ~~p~~~~~~~~lg~~~~~~g~~~eA-~~~~~~al~~ 667 (889)
..|+|..+...+..+..+...+.+. .+.|..++..
T Consensus 320 ~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 320 LEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999988888888877766655544 6677777654
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.1e-07 Score=74.30 Aligned_cols=64 Identities=17% Similarity=0.258 Sum_probs=59.9
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh
Q 002716 608 FRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (889)
Q Consensus 608 ~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 671 (889)
+.+|..+...|++++|+..|+++++..|+++++++.+|.++..+|++++|+..|+++++.+|++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 3578999999999999999999999999999999999999999999999999999999999975
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.8e-07 Score=73.76 Aligned_cols=64 Identities=22% Similarity=0.202 Sum_probs=58.0
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCc
Q 002716 483 MYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (889)
Q Consensus 483 ~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 546 (889)
+.+|..++..|++++|+..|++++...| +.++++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4678999999999999999999999999 999999999999999999999999999999999874
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.0003 Score=74.06 Aligned_cols=263 Identities=16% Similarity=0.114 Sum_probs=194.4
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHcCCCCHHHHHHHHHHH--HhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHH
Q 002716 482 YMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFF--LALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHM 559 (889)
Q Consensus 482 ~~~la~~~~~~g~~~~Al~~l~kal~~~p~~~~l~~~a~~~--~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg 559 (889)
+..-+..-+-.|+++.|.+-|+.++. +|....+-++|.+. ...|+.+.|+.+-+.+-...|... -+....-
T Consensus 123 hlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~------WA~~AtL 195 (531)
T COG3898 123 HLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLP------WAARATL 195 (531)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCc------hHHHHHH
Confidence 33446777889999999999998875 56555555665544 467999999999999999999988 4544455
Q ss_pred HHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCC-----hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Q 002716 560 LVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK-----GVLYFRQSLLLLRLNCPEAAMRSLQLARQHA 634 (889)
Q Consensus 560 ~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 634 (889)
......|+|+.|+++.... .....+.++- ..++...+... -.-+...|...-.++.++.
T Consensus 196 e~r~~~gdWd~AlkLvd~~---------------~~~~vie~~~aeR~rAvLLtAkA~s~-ldadp~~Ar~~A~~a~KL~ 259 (531)
T COG3898 196 EARCAAGDWDGALKLVDAQ---------------RAAKVIEKDVAERSRAVLLTAKAMSL-LDADPASARDDALEANKLA 259 (531)
T ss_pred HHHHhcCChHHHHHHHHHH---------------HHHHhhchhhHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHhhcC
Confidence 6677899999998877111 1111122211 11222222222 2346888999999999999
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHH
Q 002716 635 ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQA 714 (889)
Q Consensus 635 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~ 714 (889)
|+...+-..-+..++..|+..++-..++.+.+..|.-+.+ +.++....| ++.+..++.+.+.-.-..+..+.
T Consensus 260 pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia--~lY~~ar~g------dta~dRlkRa~~L~slk~nnaes 331 (531)
T COG3898 260 PDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA--LLYVRARSG------DTALDRLKRAKKLESLKPNNAES 331 (531)
T ss_pred CccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH--HHHHHhcCC------CcHHHHHHHHHHHHhcCccchHH
Confidence 9999999999999999999999999999999998876422 223333444 45556666666655555566777
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHccCcc-hHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhc
Q 002716 715 LNNLGSVYVDCGQLDLAADCYSNALKIRHT-RAHQGLARVHFLK-NNKTTAYEEMTKLIKKAR 775 (889)
Q Consensus 715 ~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~-~a~~~La~~~~~~-g~~~~A~~~~~~al~~~~ 775 (889)
....+..-+..|++..|..--+.+....|. .++..++++-... |+-.+....+.+++..-.
T Consensus 332 ~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APr 394 (531)
T COG3898 332 SLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPR 394 (531)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCC
Confidence 888888899999999999999999999998 7788889887766 999999998888876543
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00024 Score=72.34 Aligned_cols=222 Identities=23% Similarity=0.197 Sum_probs=132.7
Q ss_pred ccCHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCCCcchhhhHHHHHHHHHHHHHhh
Q 002716 492 KQNVEAALAEINRILGFKLA---LECLELRFCFFLALEDYQAALCDVQAILT--LSPDYRMFEGRVAASQLHMLVREHID 566 (889)
Q Consensus 492 ~g~~~~Al~~l~kal~~~p~---~~~l~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~a~~~lg~~~~~~~ 566 (889)
.+.+..+...+...+...+. .......+..+...+++..+...+...+. ..+... ..+...+..+...+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 109 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLA------EALLNLGLLLEALG 109 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchH------HHHHHHHHHHHHHh
Confidence 35555566666666655553 45555666666666666666666666665 344444 45555666666666
Q ss_pred chhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHH-HHHHhCCHHHHHHHHHHHHHcCC---CcHHHHH
Q 002716 567 NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSL-LLLRLNCPEAAMRSLQLARQHAA---SDHERLV 642 (889)
Q Consensus 567 ~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~l~~al~~~p---~~~~~~~ 642 (889)
++..+...+ .+++...+.........+. ++...|+++.|...+.+++...| .......
T Consensus 110 ~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 171 (291)
T COG0457 110 KYEEALELL------------------EKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALL 171 (291)
T ss_pred hHHHHHHHH------------------HHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHH
Confidence 666664444 6666655555444444444 66666777777777776666554 2344455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHH
Q 002716 643 YEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVY 722 (889)
Q Consensus 643 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y 722 (889)
..+..+...+++++|+..+.+++...+.. ....+..++..+
T Consensus 172 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~ 212 (291)
T COG0457 172 ALGALLEALGRYEEALELLEKALKLNPDD---------------------------------------DAEALLNLGLLY 212 (291)
T ss_pred HhhhHHHHhcCHHHHHHHHHHHHhhCccc---------------------------------------chHHHHHhhHHH
Confidence 55555666666777776666666554442 013455666666
Q ss_pred HHcCChHHHHHHHHHHHccCcc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc
Q 002716 723 VDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARN 776 (889)
Q Consensus 723 ~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~ 776 (889)
...+++++|...+..++...|. ..+..++..+...|.++++...+.+.+...|.
T Consensus 213 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 213 LKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 6666777777777777777765 45555555555555566666666666655553
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.4e-06 Score=90.88 Aligned_cols=128 Identities=22% Similarity=0.202 Sum_probs=80.6
Q ss_pred HHHhhhHHHhcccHHHHHHHHHHHHHc-CcchhHhhHHHHHhhcCCcHHHHHHHhhhhhccCcchhHHHHHhhcCChhHH
Q 002716 386 FHQLGCVRLLRKEYDEAEHLFEAAVNA-GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKR 464 (889)
Q Consensus 386 ~~~lG~~~~~~g~~~eA~~~~~~al~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A 464 (889)
...-|+.|+++|+|..|..-|++|+.. .+..+. +.+.. +++
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~-----------~~ee~---------------------------~~~ 252 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSF-----------DEEEQ---------------------------KKA 252 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccC-----------CHHHH---------------------------HHH
Confidence 456799999999999999999999863 111100 00000 000
Q ss_pred HHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Q 002716 465 WEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSP 543 (889)
Q Consensus 465 ~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p 543 (889)
.. + ....+.++|.++.+++.|.+|+..++++|..+| |..+++.+|.++..+|+|+.|+.+|+++++++|
T Consensus 253 ~~-~---------k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P 322 (397)
T KOG0543|consen 253 EA-L---------KLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEP 322 (397)
T ss_pred HH-H---------HHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCC
Confidence 00 0 012456677777777777777777777777777 777777777777777777777777777777777
Q ss_pred CCcchhhhHHHHHHHHHHHHHhhc
Q 002716 544 DYRMFEGRVAASQLHMLVREHIDN 567 (889)
Q Consensus 544 ~~~~~~~~~~a~~~lg~~~~~~~~ 567 (889)
+|. .+...+..+..+...
T Consensus 323 ~Nk------a~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 323 SNK------AARAELIKLKQKIRE 340 (397)
T ss_pred CcH------HHHHHHHHHHHHHHH
Confidence 776 455555555444433
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00011 Score=74.82 Aligned_cols=185 Identities=24% Similarity=0.222 Sum_probs=137.6
Q ss_pred hHHHHHHHHhhhcCCC--ChhhHHHHHHHHHhccCHHHHHHHHHHHHc--CCC-CHHHHHHHHHHHHhcccHHHHHHHHH
Q 002716 462 DKRWEDLDKATALDPT--LSYPYMYRASSLMTKQNVEAALAEINRILG--FKL-ALECLELRFCFFLALEDYQAALCDVQ 536 (889)
Q Consensus 462 ~~A~~~~~~al~~dp~--~~~a~~~la~~~~~~g~~~~Al~~l~kal~--~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~ 536 (889)
..+...+.......+. ....+...+..+...+.+..+...+...+. ..+ ....+...+..+...+++..++..+.
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
T COG0457 40 AEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLE 119 (291)
T ss_pred HHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4555566666666665 366677778888888888888888888876 444 66777777888888888888888888
Q ss_pred HHHHhCCCCcchhhhHHHHHHHHH-HHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCC---CChHHHHHHHH
Q 002716 537 AILTLSPDYRMFEGRVAASQLHML-VREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA---PKGVLYFRQSL 612 (889)
Q Consensus 537 ~al~~~p~~~~~~~~~~a~~~lg~-~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p---~~~~~~~~la~ 612 (889)
+++...+... ......+. ++...|+++.|...+ .+++..+| .........+.
T Consensus 120 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~a~~~~------------------~~~~~~~~~~~~~~~~~~~~~~ 175 (291)
T COG0457 120 KALALDPDPD------LAEALLALGALYELGDYEEALELY------------------EKALELDPELNELAEALLALGA 175 (291)
T ss_pred HHHcCCCCcc------hHHHHHHHHHHHHcCCHHHHHHHH------------------HHHHhcCCCccchHHHHHHhhh
Confidence 8888777664 34444445 788888888886666 77776665 34555666666
Q ss_pred HHHHhCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002716 613 LLLRLNCPEAAMRSLQLARQHAAS-DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (889)
Q Consensus 613 ~~~~~g~~~~A~~~l~~al~~~p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 670 (889)
.+...++++.|+..+.+++...+. ....+..++..+...+++++|+..+..++...|.
T Consensus 176 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 176 LLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred HHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 677788888888888888888888 6788888888888888888888888888877666
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.8e-06 Score=95.74 Aligned_cols=133 Identities=9% Similarity=-0.012 Sum_probs=90.3
Q ss_pred HHHHHHHHHhccC---HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhc--------ccHHHHHHHHHHHHHh--CCCCcc
Q 002716 482 YMYRASSLMTKQN---VEAALAEINRILGFKL-ALECLELRFCFFLAL--------EDYQAALCDVQAILTL--SPDYRM 547 (889)
Q Consensus 482 ~~~la~~~~~~g~---~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~--------g~~~~A~~~~~~al~~--~p~~~~ 547 (889)
++.+|.-++..+. ..+|+..|+++++.+| ...++..++.++... ++...+....++++.+ +|..+
T Consensus 342 ~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~- 420 (517)
T PRK10153 342 LFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLP- 420 (517)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCCh-
Confidence 3444555544333 5566666677777776 555555555554332 2344555566665554 55555
Q ss_pred hhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHH
Q 002716 548 FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSL 627 (889)
Q Consensus 548 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l 627 (889)
.++..+|..+...|++++|...+ +++++++| +..+|..+|.++...|++++|+..|
T Consensus 421 -----~~~~ala~~~~~~g~~~~A~~~l------------------~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~ 476 (517)
T PRK10153 421 -----RIYEILAVQALVKGKTDEAYQAI------------------NKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAY 476 (517)
T ss_pred -----HHHHHHHHHHHhcCCHHHHHHHH------------------HHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 56777777777788888886666 88888888 4678888888888888888888888
Q ss_pred HHHHHcCCCcHH
Q 002716 628 QLARQHAASDHE 639 (889)
Q Consensus 628 ~~al~~~p~~~~ 639 (889)
++|+.++|.++.
T Consensus 477 ~~A~~L~P~~pt 488 (517)
T PRK10153 477 STAFNLRPGENT 488 (517)
T ss_pred HHHHhcCCCCch
Confidence 888888888764
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.44 E-value=5e-07 Score=77.36 Aligned_cols=81 Identities=17% Similarity=0.168 Sum_probs=71.3
Q ss_pred hhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCC--ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHH
Q 002716 565 IDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP--KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLV 642 (889)
Q Consensus 565 ~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 642 (889)
.|++++|+.++ +++++.+|. +...++.+|.+|.+.|++++|+..+++ .+.+|.+....+
T Consensus 2 ~~~y~~Ai~~~------------------~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~ 62 (84)
T PF12895_consen 2 QGNYENAIKYY------------------EKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHY 62 (84)
T ss_dssp TT-HHHHHHHH------------------HHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHH
T ss_pred CccHHHHHHHH------------------HHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHH
Confidence 57899997777 999999995 566788899999999999999999999 888888889999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 002716 643 YEGWILYDTSHCEEGLRKAEES 664 (889)
Q Consensus 643 ~lg~~~~~~g~~~eA~~~~~~a 664 (889)
.+|.++..+|++++|++.++++
T Consensus 63 l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 63 LLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHhcC
Confidence 9999999999999999999875
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.8e-07 Score=94.25 Aligned_cols=191 Identities=11% Similarity=0.068 Sum_probs=138.0
Q ss_pred cCcchhHHHHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Q 002716 445 VTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFL 523 (889)
Q Consensus 445 ~~~~g~~~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~ 523 (889)
.+..|.-|+.++.| ++|+.+|.+++..+|.++..+.++|..|++.++|..|...++.++.++. ...+|..+|..-.
T Consensus 100 iKE~GN~yFKQgKy---~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~ 176 (536)
T KOG4648|consen 100 IKERGNTYFKQGKY---EEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARE 176 (536)
T ss_pred HHHhhhhhhhccch---hHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34578899999999 9999999999999999999999999999999999999999999999998 8889999999999
Q ss_pred hcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCC
Q 002716 524 ALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK 603 (889)
Q Consensus 524 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~ 603 (889)
.+|...+|.++++.+|++.|++. +....++ ......++ .-+.+..|+.
T Consensus 177 ~Lg~~~EAKkD~E~vL~LEP~~~------ELkK~~a----~i~Sl~E~----------------------~I~~KsT~G~ 224 (536)
T KOG4648|consen 177 SLGNNMEAKKDCETVLALEPKNI------ELKKSLA----RINSLRER----------------------KIATKSTPGF 224 (536)
T ss_pred HHhhHHHHHHhHHHHHhhCcccH------HHHHHHH----HhcchHhh----------------------hHHhhcCCCC
Confidence 99999999999999999999976 3322222 22222222 1111222221
Q ss_pred hHH---------HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh
Q 002716 604 GVL---------YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (889)
Q Consensus 604 ~~~---------~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 671 (889)
..+ .-..|..+...|.++.++..+-+-+....++.....+ +..+....++++|+....+++..+|..
T Consensus 225 ~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~ 300 (536)
T KOG4648|consen 225 TPARQGMIQILPIKKPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTP 300 (536)
T ss_pred CccccchhhhccccCcchhhhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCc
Confidence 111 1123555666777777777766555444333322222 455666677888888777777777665
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=6.5e-05 Score=80.82 Aligned_cols=366 Identities=13% Similarity=0.072 Sum_probs=213.2
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHH-HHhCCCCcc--hhhhHHHHHH
Q 002716 482 YMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAI-LTLSPDYRM--FEGRVAASQL 557 (889)
Q Consensus 482 ~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~a-l~~~p~~~~--~~~~~~a~~~ 557 (889)
..+.-..|....+..-+....+.+..... ++.++.+.+..++..|++.+|.+.+... +...|.-.. .......+++
T Consensus 209 ~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NN 288 (696)
T KOG2471|consen 209 QLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNN 288 (696)
T ss_pred hHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecC
Confidence 34445556777778888888888877766 8889999999999999999999876543 223333111 1112235788
Q ss_pred HHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHh-------cC-----------CCChHHHHHHHHHHHHhCC
Q 002716 558 HMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE-------SD-----------APKGVLYFRQSLLLLRLNC 619 (889)
Q Consensus 558 lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~-------~~-----------p~~~~~~~~la~~~~~~g~ 619 (889)
+|.++++.+.|.-+..+| .++++ .. ...-.+.++.|..|+..|+
T Consensus 289 lGcIh~~~~~y~~~~~~F------------------~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~gr 350 (696)
T KOG2471|consen 289 LGCIHYQLGCYQASSVLF------------------LKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGR 350 (696)
T ss_pred cceEeeehhhHHHHHHHH------------------HHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCC
Confidence 999999999999998888 44442 11 1345688999999999999
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc---CCH------------------------------------------
Q 002716 620 PEAAMRSLQLARQHAASDHERLVYEGWILYDT---SHC------------------------------------------ 654 (889)
Q Consensus 620 ~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~---g~~------------------------------------------ 654 (889)
+-.|.++|.+++...-.+|..|..++.+.... |-.
T Consensus 351 Pl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p 430 (696)
T KOG2471|consen 351 PLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLP 430 (696)
T ss_pred cHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCC
Confidence 99999999999999999999999998876531 111
Q ss_pred ----HHHHHHHHHHHhcCCCh---HHHHHHHHHHHHcCCCCCcc--hhhhhhH----HHHhcchhhhC------c--hhH
Q 002716 655 ----EEGLRKAEESIQMKRSF---EAFFLKAYALADSSQDSSCS--STVVSLL----EDALKCPSDRL------R--KGQ 713 (889)
Q Consensus 655 ----~eA~~~~~~al~~~p~~---~a~~~la~~~~~~~~~~~~~--~~~~~~~----~~Al~~~~~~~------~--~~~ 713 (889)
+-|.-+++.++-+-|+. ...+..|..-.+.|..++.. ++.-.-. +.-.......+ + +..
T Consensus 431 ~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~a 510 (696)
T KOG2471|consen 431 KLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQA 510 (696)
T ss_pred ccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHH
Confidence 11222222232222211 12222222211112111100 0000000 00000000000 0 034
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHccCcc-hHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHhccCHHHHHHHHhc
Q 002716 714 ALNNLGSVYVDCGQLDLAADCYSNALKIRHT-RAHQGLARVHF-----LKNNKTTAYEEMTKLIKKARNNASAYEKRSEY 787 (889)
Q Consensus 714 ~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~-~a~~~La~~~~-----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 787 (889)
.+.+.+.+-...|+.-.|+..-++.++...- .++..||.+|. ...+..+|...+.--+--..+...-+. .
T Consensus 511 i~A~~ayV~L~Lgd~i~AL~~a~kLLq~~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n-~--- 586 (696)
T KOG2471|consen 511 IFANMAYVELELGDPIKALSAATKLLQLADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYN-Q--- 586 (696)
T ss_pred HHHHHHHHHHHhcChhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccc-h---
Confidence 5667777888899999999999888876443 55555555553 444555554443321110000000000 0
Q ss_pred CCHHHHHH---HHHH----HHhcCCC-----ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC---HHHHHHHHHHHH
Q 002716 788 CDRELTRA---DLEM----VTQLDPL-----RVYPYRYRAAVLMDSHKENEAIAELSRAIAFKAD---LHLLHLRAAFHE 852 (889)
Q Consensus 788 ~~~~~A~~---~l~~----al~l~p~-----~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~---~~~l~l~a~~~~ 852 (889)
.|++.-.. .++- ..+..|. ..-.++++|.++.-+|.+++|...+..|..+-|. +....++-.+-.
T Consensus 587 ~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL 666 (696)
T KOG2471|consen 587 EDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDL 666 (696)
T ss_pred hhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHH
Confidence 01111000 0000 0011111 1235778999999999999999999999887763 234445555556
Q ss_pred HcCCHHHHHHHHHHHHc
Q 002716 853 HTGDVLGALRDCRAALS 869 (889)
Q Consensus 853 ~~g~~~~A~~~~~~al~ 869 (889)
++|+...|+..+++.--
T Consensus 667 ~~G~~q~al~~lk~~~~ 683 (696)
T KOG2471|consen 667 MLGRSQDALARLKQCTH 683 (696)
T ss_pred hcCCCcchHHHHHhccc
Confidence 67999999998887543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.2e-06 Score=74.92 Aligned_cols=83 Identities=20% Similarity=0.165 Sum_probs=51.4
Q ss_pred cccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCCh
Q 002716 525 LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG 604 (889)
Q Consensus 525 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~ 604 (889)
+|++++|+..+++++..+|.+. . ...++.+|.++.+.|++++|..++ ++ .+.+|.+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~--~--~~~~~~la~~~~~~~~y~~A~~~~------------------~~-~~~~~~~~ 58 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP--N--SAYLYNLAQCYFQQGKYEEAIELL------------------QK-LKLDPSNP 58 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH--H--HHHHHHHHHHHHHTTHHHHHHHHH------------------HC-HTHHHCHH
T ss_pred CccHHHHHHHHHHHHHHCCCCh--h--HHHHHHHHHHHHHCCCHHHHHHHH------------------HH-hCCCCCCH
Confidence 4667777777777777766431 0 034555677777777777775555 55 55566666
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH
Q 002716 605 VLYFRQSLLLLRLNCPEAAMRSLQLA 630 (889)
Q Consensus 605 ~~~~~la~~~~~~g~~~~A~~~l~~a 630 (889)
...+.+|.++..+|++++|+..|+++
T Consensus 59 ~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 59 DIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 66666677777777777777776653
|
|
| >KOG0511 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.6e-06 Score=89.61 Aligned_cols=136 Identities=16% Similarity=0.198 Sum_probs=105.3
Q ss_pred eEEEehHHHHhhcChhhhhhhcCCCCCCCc----CceEecCCCCCHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHHc
Q 002716 191 EKIECDRQKFAALSAPFSAMLNGSFMESLC----EDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFC 266 (889)
Q Consensus 191 ~~~~~hr~vLaa~s~~F~~mf~~~~~e~~~----~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~ll~~A~~~~ 266 (889)
.+.|||+.++ .|++||+.||.|+|.|+.. +...++ ..+..+.+.++.|+|+++-+ +.++...+++-+|+++.
T Consensus 301 ~RyP~hla~i-~R~eyfk~mf~g~f~e~s~n~~~p~lslp--~~~~~vveI~lr~lY~d~td-i~~~~A~dvll~ad~la 376 (516)
T KOG0511|consen 301 DRYPAHLARI-LRVEYFKSMFVGDFIESSVNDTRPGLSLP--SLADVVVEIDLRNLYCDQTD-IIFDVASDVLLFADKLA 376 (516)
T ss_pred ccccHHHHHH-HHHHHHHHHhccchhhhcCCccccccccc--hHHHHHHHHHHHHhhccccc-chHHHHhhHHHHhhHhh
Confidence 3499999999 6999999999999999652 233344 47788999999999999999 99999999999999994
Q ss_pred HH--H-HHHHHHHHHHhhcC--CHHHHHHHHHHHHHcCChhhHHHHHHHHhhhcccccChHHHHHHhcc
Q 002716 267 CE--R-LKDACDRKLASLVA--SREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVEIFSH 330 (889)
Q Consensus 267 ~~--~-l~~~~~~~l~~~~~--~~~~~~~~~~~a~~~~~~~l~~~c~~~~~~~l~~~l~~~~~~~ll~~ 330 (889)
++ . ||..-...+++... ..-++..++.++-+-.+..|....-.+..+|+...+..+++.+.+..
T Consensus 377 l~~dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~l~~dPe~~~~~~~ 445 (516)
T KOG0511|consen 377 LADDRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEARHLLLLLPDPEGDSSLRT 445 (516)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCchhhHHHHh
Confidence 43 3 66655555544332 22347788888888888888888888888887777777777766544
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=9.7e-06 Score=76.42 Aligned_cols=104 Identities=10% Similarity=-0.074 Sum_probs=83.4
Q ss_pred HHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhccc
Q 002716 505 ILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSS 583 (889)
Q Consensus 505 al~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~ 583 (889)
+.++.+ ..+..+..|.-++..|++++|...|+-+...+|.++ +-+..||.++...++|++|+..|
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~------~Y~~GLaa~~Q~~k~y~~Ai~~Y-------- 94 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNP------DYTMGLAAVCQLKKQFQKACDLY-------- 94 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcH------HHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 334444 566677778888888888888888888888888887 67778888888888888886666
Q ss_pred ccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 002716 584 VDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 632 (889)
Q Consensus 584 ~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 632 (889)
..+..++++++...+..|.+++.+|+.+.|+..|+.++.
T Consensus 95 ----------~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 95 ----------AVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred ----------HHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 777777888888888888888888888888888888887
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=8.3e-06 Score=85.33 Aligned_cols=107 Identities=8% Similarity=-0.076 Sum_probs=90.1
Q ss_pred hhhHHHHHHHH-HhccCHHHHHHHHHHHHcCCC-C---HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHH
Q 002716 479 SYPYMYRASSL-MTKQNVEAALAEINRILGFKL-A---LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVA 553 (889)
Q Consensus 479 ~~a~~~la~~~-~~~g~~~~Al~~l~kal~~~p-~---~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 553 (889)
...++..|..+ +..|+|++|+..|++.+...| + +.+++.+|.+|+..|++++|+..|++++..+|+++... .
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~---d 218 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAA---D 218 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh---H
Confidence 45667777765 667999999999999999998 3 57999999999999999999999999999999876332 5
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHH
Q 002716 554 ASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL 606 (889)
Q Consensus 554 a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~ 606 (889)
+++.+|.++...|++++|...+ +++++..|+...+
T Consensus 219 Al~klg~~~~~~g~~~~A~~~~------------------~~vi~~yP~s~~a 253 (263)
T PRK10803 219 AMFKVGVIMQDKGDTAKAKAVY------------------QQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH------------------HHHHHHCcCCHHH
Confidence 7888899999999999997777 8999999987654
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.8e-06 Score=77.89 Aligned_cols=110 Identities=10% Similarity=-0.061 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 002716 553 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 632 (889)
Q Consensus 553 ~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 632 (889)
+..+..|.-.+..|++++|...| +-..-.+|.++..+..+|.++..+++|++|+..|..+..
T Consensus 38 e~iY~~Ay~~y~~Gk~~eA~~~F------------------~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~ 99 (165)
T PRK15331 38 DGLYAHAYEFYNQGRLDEAETFF------------------RFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFT 99 (165)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHH------------------HHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888899999999998888 777778999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 002716 633 HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYAL 681 (889)
Q Consensus 633 ~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~ 681 (889)
.+++++...+..|.++...|+.+.|...|+.++. .|.+......+..+
T Consensus 100 l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~ 147 (165)
T PRK15331 100 LLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVY 147 (165)
T ss_pred cccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHH
Confidence 9999999999999999999999999999999997 45554333444433
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=5.8e-05 Score=76.20 Aligned_cols=65 Identities=12% Similarity=0.059 Sum_probs=51.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHccCcc-----hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHH
Q 002716 715 LNNLGSVYVDCGQLDLAADCYSNALKIRHT-----RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNAS 779 (889)
Q Consensus 715 ~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~-----~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~ 779 (889)
-..+|..|.+.|.+..|+.-++.+++..|+ .++..+..+|...|-.++|.+.-.-+-...|+..|
T Consensus 170 Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~~ 239 (254)
T COG4105 170 EMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQW 239 (254)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCcc
Confidence 356789999999999999999999998777 78888999999999998887654433333344433
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00014 Score=87.32 Aligned_cols=243 Identities=14% Similarity=0.057 Sum_probs=169.1
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCh-HHHHHHHHHHHHcCCCCCcchhhhhhHH
Q 002716 622 AAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ-MKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLE 699 (889)
Q Consensus 622 ~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~-~~p~~-~a~~~la~~~~~~~~~~~~~~~~~~~~~ 699 (889)
+....|++.+..+|+..-.|..+..-..+.++.++|.+.+++|+. +++.. +-..++-.+|.+..+.........+-++
T Consensus 1442 esaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred cCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHH
Confidence 344566777777788777777777777777888888888888875 33333 2222222222222222222222333333
Q ss_pred HHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc-
Q 002716 700 DALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARN- 776 (889)
Q Consensus 700 ~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~- 776 (889)
+|.++. .+..+|..|..+|...+++++|.++|+..++.... ..|..+|..++.+++-++|...+.++++..|.
T Consensus 1522 RAcqyc----d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~ 1597 (1710)
T KOG1070|consen 1522 RACQYC----DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQ 1597 (1710)
T ss_pred HHHHhc----chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchh
Confidence 333322 23468888999999999999999999999988765 89999999999999999999999999999996
Q ss_pred -CHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCH---HHHHHHH
Q 002716 777 -NASAYEKRSE----YCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL---HLLHLRA 848 (889)
Q Consensus 777 -~~~~~~~~~~----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~---~~l~l~a 848 (889)
........+. +|+.+.+...|+-.+..+|...+.|.-..+.-++.|+.+-+...|++++.+.-.. ..++...
T Consensus 1598 eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkw 1677 (1710)
T KOG1070|consen 1598 EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKW 1677 (1710)
T ss_pred hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHH
Confidence 3333333333 4999999999999999999999999999999999999999999999999876554 2333333
Q ss_pred HHHHHc-CCHHHHHHHHHHHH
Q 002716 849 AFHEHT-GDVLGALRDCRAAL 868 (889)
Q Consensus 849 ~~~~~~-g~~~~A~~~~~~al 868 (889)
.-|... ||-..+...=.+|.
T Consensus 1678 LeyEk~~Gde~~vE~VKarA~ 1698 (1710)
T KOG1070|consen 1678 LEYEKSHGDEKNVEYVKARAK 1698 (1710)
T ss_pred HHHHHhcCchhhHHHHHHHHH
Confidence 333332 55444433333333
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.32 E-value=5.5e-07 Score=92.19 Aligned_cols=98 Identities=8% Similarity=-0.093 Sum_probs=92.0
Q ss_pred HHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Q 002716 556 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA 635 (889)
Q Consensus 556 ~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p 635 (889)
.-.|.-|..+|+|++|+.++ .+++..+|.++..+.+.+.+|+++.++..|....+.|+.++.
T Consensus 101 KE~GN~yFKQgKy~EAIDCY------------------s~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~ 162 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCY------------------STAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK 162 (536)
T ss_pred HHhhhhhhhccchhHHHHHh------------------hhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH
Confidence 34578899999999997777 999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh
Q 002716 636 SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (889)
Q Consensus 636 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 671 (889)
....+|...|..-..+|...+|.+.++.++.+.|+.
T Consensus 163 ~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 163 LYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCccc
Confidence 999999999999999999999999999999999987
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=9e-05 Score=74.84 Aligned_cols=175 Identities=14% Similarity=0.059 Sum_probs=139.7
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc-----hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccC---HHHHH
Q 002716 711 KGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-----RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNN---ASAYE 782 (889)
Q Consensus 711 ~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~-----~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~ 782 (889)
++..+++-|....+.|++++|+..|+......|. .+...++.++++.+++++|+...++-+...|.+ ..+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 4678899999999999999999999999988887 788899999999999999999999999999954 44555
Q ss_pred HHHh--c----------CCHHHHHHHHHHHHhcCCCChHH-----------------HHHHHHHHHhCCCHHHHHHHHHH
Q 002716 783 KRSE--Y----------CDRELTRADLEMVTQLDPLRVYP-----------------YRYRAAVLMDSHKENEAIAELSR 833 (889)
Q Consensus 783 ~~~~--~----------~~~~~A~~~l~~al~l~p~~~~~-----------------~~~la~~~~~~g~~~eA~~~l~k 833 (889)
.++. + .-...|...|+..++.-|+..++ -+..|..|.+.|.+..|+..++.
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~ 192 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE 192 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 5555 2 12356788889999988876432 23468899999999999999999
Q ss_pred HHhcCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHhhh
Q 002716 834 AIAFKADL----HLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVY 885 (889)
Q Consensus 834 al~~~p~~----~~l~l~a~~~~~~g~~~~A~~~~~~al~l~P~~~~~l~l~~~~~ 885 (889)
+++..|+. +.+..+...|..+|-.++|...-.-.-...|++++..+-+....
T Consensus 193 v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~~~~~~~~~~~ 248 (254)
T COG4105 193 VLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQWYKDAYRLLQ 248 (254)
T ss_pred HHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCcchhhhhhccc
Confidence 99998874 45557777888889999996665554455588877776665443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.0016 Score=75.63 Aligned_cols=226 Identities=15% Similarity=0.044 Sum_probs=117.9
Q ss_pred hcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCC
Q 002716 524 ALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK 603 (889)
Q Consensus 524 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~ 603 (889)
..+++.+|.....++++..|+.. .+..+-|.+..+.|+.++|...+ +..-...+++
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~------~a~vLkaLsl~r~gk~~ea~~~L------------------e~~~~~~~~D 76 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNAL------YAKVLKALSLFRLGKGDEALKLL------------------EALYGLKGTD 76 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcH------HHHHHHHHHHHHhcCchhHHHHH------------------hhhccCCCCc
Confidence 34566666666666666666665 45555566666666666664333 3222333444
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHH--HHHHH
Q 002716 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFL--KAYAL 681 (889)
Q Consensus 604 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~--la~~~ 681 (889)
...+-.+..+|..+|++++|...|+++...+|+ .+.++.+-.+|.+.+.|.+-.+..-+..+..|+...++. ...++
T Consensus 77 ~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slil 155 (932)
T KOG2053|consen 77 DLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLIL 155 (932)
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHH
Confidence 555555666666666666666666666666666 555555555565555554443333333344455522221 22111
Q ss_pred HHcCCCCCcchhhhhhHHHHhcchhhhCc---h----hHHHHHHHHHHHHcCChHHHHHHHHHHHc-cCcc---hHHHHH
Q 002716 682 ADSSQDSSCSSTVVSLLEDALKCPSDRLR---K----GQALNNLGSVYVDCGQLDLAADCYSNALK-IRHT---RAHQGL 750 (889)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~Al~~~~~~~~---~----~~~~~~Lg~~y~~~g~~~~A~~~~~~al~-~~p~---~a~~~L 750 (889)
......+.... .-.+.-|.+.....+. + +++... -.+....|++++|.+.+..-+. ..+. .....-
T Consensus 156 qs~~~~~~~~~--~i~l~LA~~m~~~~l~~~gk~~s~aE~~Ly-l~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~ 232 (932)
T KOG2053|consen 156 QSIFSENELLD--PILLALAEKMVQKLLEKKGKIESEAEIILY-LLILELQGKYQEALEFLAITLAEKLTSANLYLENKK 232 (932)
T ss_pred HhccCCccccc--chhHHHHHHHHHHHhccCCccchHHHHHHH-HHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 11110110000 0011112222222111 1 122111 2345667889999998854432 2222 233345
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhccC
Q 002716 751 ARVHFLKNNKTTAYEEMTKLIKKARNN 777 (889)
Q Consensus 751 a~~~~~~g~~~~A~~~~~~al~~~~~~ 777 (889)
...+...++|.+-.+...+++...+++
T Consensus 233 ~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 233 LDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 667788899999999999999888876
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00019 Score=72.06 Aligned_cols=256 Identities=15% Similarity=0.031 Sum_probs=168.1
Q ss_pred HHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcc
Q 002716 612 LLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCS 691 (889)
Q Consensus 612 ~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~ 691 (889)
.-++..|+|.+++..-++.-... ...+...++...|..+|.+..-+.....+- .|...+...++..+..-+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~--~~~lqAvr~~a~~~~~e~------ 86 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK--ATPLQAVRLLAEYLELES------ 86 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc--CChHHHHHHHHHHhhCcc------
Confidence 34667888888887776654433 667788888888888888765544333221 222244555555444333
Q ss_pred hhhhhhHHHHhcchhhh-----Cch-hHHHHHHHHHHHHcCChHHHHHHHHHHHccCcchHHHHHHHHHHHcCCHHHHHH
Q 002716 692 STVVSLLEDALKCPSDR-----LRK-GQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYE 765 (889)
Q Consensus 692 ~~~~~~~~~Al~~~~~~-----~~~-~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~~a~~~La~~~~~~g~~~~A~~ 765 (889)
+.+..+....+. ... ......-|.+|...|++++|.........+ ++...-..++.+..+++-|.+
T Consensus 87 -----~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l---E~~Al~VqI~lk~~r~d~A~~ 158 (299)
T KOG3081|consen 87 -----NKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL---EAAALNVQILLKMHRFDLAEK 158 (299)
T ss_pred -----hhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH---HHHHHHHHHHHHHHHHHHHHH
Confidence 222222111111 111 233444567888999999998887663222 444445567788888888888
Q ss_pred HHHHHHHHhcc-----CHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Q 002716 766 EMTKLIKKARN-----NASAYEKRSEY-CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKA 839 (889)
Q Consensus 766 ~~~~al~~~~~-----~~~~~~~~~~~-~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p 839 (889)
.++++.+.+.+ .+.+|.....- +...+|.-.|+..-+..|..+......|.+.+.+|++++|...++.++..++
T Consensus 159 ~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 159 ELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 88888777663 34444444442 4678888899988887888888999999999999999999999999999888
Q ss_pred CH-HHHHHHHHHHHHcCCHHH-HHHHHHHHHccCCCCHHHHHHHHhh
Q 002716 840 DL-HLLHLRAAFHEHTGDVLG-ALRDCRAALSVDPNDQEMLELHSRV 884 (889)
Q Consensus 840 ~~-~~l~l~a~~~~~~g~~~~-A~~~~~~al~l~P~~~~~l~l~~~~ 884 (889)
.. +.+...-.+-...|...+ -.+...+.....|+++.+-++-.+-
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk~~~eke 285 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVKHLNEKE 285 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 75 555544444444465544 4456677777889999887665543
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0027 Score=75.77 Aligned_cols=440 Identities=18% Similarity=0.160 Sum_probs=238.7
Q ss_pred HHHHHHHH-HhhhhHHHHHHHHHHhhhHHH-hcccHHHHHHHHHHHHHcCcc--------hhHhhHHHHHhhcCCcHHHH
Q 002716 366 VCFLERLL-ESAETDRQRLLAFHQLGCVRL-LRKEYDEAEHLFEAAVNAGHI--------YSIAGLARLGYIKGHKLWAY 435 (889)
Q Consensus 366 v~~l~~~~-~~~~~~~~~~~a~~~lG~~~~-~~g~~~eA~~~~~~al~~~~~--------~~~~~la~~~~~~g~~~~A~ 435 (889)
+.-|+.+. +....+.+.+.+..++|.+++ +..++++|+.++++++...+. ....-+++++...+... |.
T Consensus 41 i~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~ 119 (608)
T PF10345_consen 41 IKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-AL 119 (608)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HH
Confidence 34444444 445567778889999999999 889999999999999765421 12334566666666655 55
Q ss_pred HHHhhhhhccCcchhHHHHHhhcCChhHHHHHHHHhhhcCCCChhhHH--H-HHHHHHhccCHHHHHHHHHHHHcCCC--
Q 002716 436 EKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYM--Y-RASSLMTKQNVEAALAEINRILGFKL-- 510 (889)
Q Consensus 436 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~--~-la~~~~~~g~~~~Al~~l~kal~~~p-- 510 (889)
..+++.++.... .+...+.|. . +...++..+++..|++.++.+.....
T Consensus 120 ~~l~~~I~~~~~---------------------------~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~ 172 (608)
T PF10345_consen 120 KNLDKAIEDSET---------------------------YGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR 172 (608)
T ss_pred HHHHHHHHHHhc---------------------------cCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc
Confidence 555544433222 122222221 1 13333344899999999988876542
Q ss_pred -----CHHHHHHHHHHHHhcccHHHHHHHHHHHHHh------CCCCcchhhhHHHHHHHHHH--HHHhhchhHHHHHHHh
Q 002716 511 -----ALECLELRFCFFLALEDYQAALCDVQAILTL------SPDYRMFEGRVAASQLHMLV--REHIDNWTIADCWLQL 577 (889)
Q Consensus 511 -----~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~~a~~~lg~~--~~~~~~~~~A~~~~~l 577 (889)
..-+....+.+....+..+++++..+++... +|+. ......++.++-.+ +...|++..+...++.
T Consensus 173 ~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~--~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~ 250 (608)
T PF10345_consen 173 GDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSV--HIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQ 250 (608)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCC--CcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2233445577777888888888888777442 2332 22223455555443 4456666676665533
Q ss_pred hhh----------cccccccchHHHHH-----------HHHhcCCCC---hHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Q 002716 578 YDR----------WSSVDDIGSLSVIY-----------QMLESDAPK---GVLYFRQSLLLLRLNCPEAAMRSLQLARQH 633 (889)
Q Consensus 578 ~~~----------~~~~dd~~sl~~~~-----------~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 633 (889)
+.. |...++.+.+..-. -.+.--|.. ..+|+.-|......|..+.|.++++++++.
T Consensus 251 lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~ 330 (608)
T PF10345_consen 251 LQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQ 330 (608)
T ss_pred HHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHH
Confidence 211 44433333321100 000000100 123445566677777777888888877653
Q ss_pred CCCcH--------------------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCC
Q 002716 634 AASDH--------------------------ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQD 687 (889)
Q Consensus 634 ~p~~~--------------------------~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~ 687 (889)
-.+.. ..+++.++...-.|++..|....+.+.+.....
T Consensus 331 i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~---------------- 394 (608)
T PF10345_consen 331 IEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRS---------------- 394 (608)
T ss_pred HHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcC----------------
Confidence 21100 123345555555666666665555444221110
Q ss_pred CCcchhhhhhHHHHhcchhhh--CchhHHHHHHHHHHHHcCChHHHHHHHH--------HHHccCcc-----hHHHHHHH
Q 002716 688 SSCSSTVVSLLEDALKCPSDR--LRKGQALNNLGSVYVDCGQLDLAADCYS--------NALKIRHT-----RAHQGLAR 752 (889)
Q Consensus 688 ~~~~~~~~~~~~~Al~~~~~~--~~~~~~~~~Lg~~y~~~g~~~~A~~~~~--------~al~~~p~-----~a~~~La~ 752 (889)
..+. .-.+..++..|..+...|+.+.|...|. .+....+. -+..++..
T Consensus 395 -----------------~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~ 457 (608)
T PF10345_consen 395 -----------------PSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAI 457 (608)
T ss_pred -----------------ccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHH
Confidence 0000 0013567778888888899999999997 44444443 45555666
Q ss_pred HHHHcCCHHHHHHHHHHHHH-Hhc---cCHHHHHH------HHhc-----CCHHHHHHHHHHHHhcC-----C--CChHH
Q 002716 753 VHFLKNNKTTAYEEMTKLIK-KAR---NNASAYEK------RSEY-----CDRELTRADLEMVTQLD-----P--LRVYP 810 (889)
Q Consensus 753 ~~~~~g~~~~A~~~~~~al~-~~~---~~~~~~~~------~~~~-----~~~~~A~~~l~~al~l~-----p--~~~~~ 810 (889)
++...+...........+++ ..| +...-+.. ...+ -...++...+..+++.. . -..-+
T Consensus 458 I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~ 537 (608)
T PF10345_consen 458 ILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAIL 537 (608)
T ss_pred HhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHH
Confidence 66666654332222333333 222 11111110 1111 12346666666655543 1 11234
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcC---CCH--HHHH-----HHHHHHHHcCCHHHHHHHHHHHHc
Q 002716 811 YRYRAAVLMDSHKENEAIAELSRAIAFK---ADL--HLLH-----LRAAFHEHTGDVLGALRDCRAALS 869 (889)
Q Consensus 811 ~~~la~~~~~~g~~~eA~~~l~kal~~~---p~~--~~l~-----l~a~~~~~~g~~~~A~~~~~~al~ 869 (889)
+..++..+. .|+..+......++.... |+. ..+. +.+..+...|+.++|.....+.-.
T Consensus 538 L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 538 LNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 666777777 788888776666665432 332 3332 556667778999999888776543
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.2e-05 Score=82.19 Aligned_cols=108 Identities=8% Similarity=-0.029 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHH-HhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccch
Q 002716 511 ALECLELRFCFF-LALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 589 (889)
Q Consensus 511 ~~~~l~~~a~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~s 589 (889)
+....+..|..+ +..|+|++|+..|++.++.+|+..... .+++.+|.+|...|++++|...|
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~---~A~y~LG~~y~~~g~~~~A~~~f-------------- 203 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQP---NANYWLGQLNYNKGKKDDAAYYF-------------- 203 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchH---HHHHHHHHHHHHcCCHHHHHHHH--------------
Confidence 445556666654 567899999999999999999875111 47777788888888888776666
Q ss_pred HHHHHHHHhcCCC---ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHH
Q 002716 590 LSVIYQMLESDAP---KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE 639 (889)
Q Consensus 590 l~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~ 639 (889)
.++++..|+ .+.+++.+|.++..+|++++|...|+++++..|+...
T Consensus 204 ----~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 204 ----ASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred ----HHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 777766655 4566777777777777777777777777777776554
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00025 Score=71.28 Aligned_cols=246 Identities=15% Similarity=0.062 Sum_probs=161.5
Q ss_pred HHhcccHHHHHHHHHHHHHc-CcchhHhhHHHHHhhcCCcHHHHHHHhhhhhccCcchhHHHHHhhc----CChhHHHHH
Q 002716 393 RLLRKEYDEAEHLFEAAVNA-GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWED 467 (889)
Q Consensus 393 ~~~~g~~~eA~~~~~~al~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~A~~~ 467 (889)
++-.|.|..++..-++.-.. +......-++|+|...|++...+..+...- .+++.- ......| ...+.-+..
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI~~~~--~~~lqA-vr~~a~~~~~e~~~~~~~~~ 94 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEIKEGK--ATPLQA-VRLLAEYLELESNKKSILAS 94 (299)
T ss_pred HHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccccccccc--CChHHH-HHHHHHHhhCcchhHHHHHH
Confidence 44568888887777666443 333445567888888888654443322111 111100 0000111 001222222
Q ss_pred HHHhh--hcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 002716 468 LDKAT--ALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (889)
Q Consensus 468 ~~~al--~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 545 (889)
+.+.+ ..+.++......-|.+++..|++++|+....+. .+.++..+--.++.++.+.+-|...+++....+.+.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~ 170 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA 170 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH
Confidence 22222 222333344455578899999999999887762 255667777788899999999999999998887655
Q ss_pred cchhhhHHHHHHHHHHHHH----hhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHH
Q 002716 546 RMFEGRVAASQLHMLVREH----IDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPE 621 (889)
Q Consensus 546 ~~~~~~~~a~~~lg~~~~~----~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 621 (889)
. +..|+..+.. .+++.+|.-.| ++.-+..|..+.....++.+++.+|+++
T Consensus 171 t--------LtQLA~awv~la~ggek~qdAfyif------------------eE~s~k~~~T~~llnG~Av~~l~~~~~e 224 (299)
T KOG3081|consen 171 T--------LTQLAQAWVKLATGGEKIQDAFYIF------------------EELSEKTPPTPLLLNGQAVCHLQLGRYE 224 (299)
T ss_pred H--------HHHHHHHHHHHhccchhhhhHHHHH------------------HHHhcccCCChHHHccHHHHHHHhcCHH
Confidence 4 3334444332 23455664444 7777778888899999999999999999
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHH-HHHHhcCCCh
Q 002716 622 AAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKA-EESIQMKRSF 671 (889)
Q Consensus 622 ~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~-~~al~~~p~~ 671 (889)
+|...++.++..++++++.+.++-.+-...|...++...+ .+....+|++
T Consensus 225 eAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 225 EAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999999999999999887776554 4444456665
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.8e-05 Score=70.68 Aligned_cols=97 Identities=19% Similarity=0.025 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHH
Q 002716 514 CLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVI 593 (889)
Q Consensus 514 ~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~ 593 (889)
+++.+|+++-..|+.++|+..|++++...+... .+..++..+|..+...|++++|..++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~---~~~~a~i~lastlr~LG~~deA~~~L------------------ 61 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGA---DRRRALIQLASTLRNLGRYDEALALL------------------ 61 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch---HHHHHHHHHHHHHHHcCCHHHHHHHH------------------
Confidence 455566666666666666666666666543332 11135555666666666666664444
Q ss_pred HHHHhcCCC---ChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 002716 594 YQMLESDAP---KGVLYFRQSLLLLRLNCPEAAMRSLQLAR 631 (889)
Q Consensus 594 ~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~l~~al 631 (889)
++.+...|+ +..+...++.++...|++++|+..+-.++
T Consensus 62 ~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 62 EEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555555555 55555556666666666666666655544
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00062 Score=82.05 Aligned_cols=216 Identities=15% Similarity=0.097 Sum_probs=165.0
Q ss_pred hHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcC-CC-----CHHHHHHHHHHHHhcccHHHHHHHH
Q 002716 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGF-KL-----ALECLELRFCFFLALEDYQAALCDV 535 (889)
Q Consensus 462 ~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~-~p-----~~~~l~~~a~~~~~~g~~~~A~~~~ 535 (889)
.+..++|++.+.-+|+....|...-...++.++.++|.+..+++|.. ++ ....|..+-++...-|.-+.-.+.|
T Consensus 1441 pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred CcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 45677899999999999999998888888999999999999999864 44 1223333333344456666777778
Q ss_pred HHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHH
Q 002716 536 QAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLL 615 (889)
Q Consensus 536 ~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~ 615 (889)
+++-+..... ..+..|..+|...+++++|.+++ +++++..-+...+|..+|..++
T Consensus 1521 eRAcqycd~~-------~V~~~L~~iy~k~ek~~~A~ell------------------~~m~KKF~q~~~vW~~y~~fLl 1575 (1710)
T KOG1070|consen 1521 ERACQYCDAY-------TVHLKLLGIYEKSEKNDEADELL------------------RLMLKKFGQTRKVWIMYADFLL 1575 (1710)
T ss_pred HHHHHhcchH-------HHHHHHHHHHHHhhcchhHHHHH------------------HHHHHHhcchhhHHHHHHHHHh
Confidence 8877654333 36677788899999999998888 8888877778889999999999
Q ss_pred HhCCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchh
Q 002716 616 RLNCPEAAMRSLQLARQHAAS--DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSST 693 (889)
Q Consensus 616 ~~g~~~~A~~~l~~al~~~p~--~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~ 693 (889)
++++-++|...+.+|++.-|. ..+....-|.+-++.|+.+.+...|+..+...|.-
T Consensus 1576 ~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKR---------------------- 1633 (1710)
T KOG1070|consen 1576 RQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKR---------------------- 1633 (1710)
T ss_pred cccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccc----------------------
Confidence 999999999999999999887 56667777888888999999999998888766654
Q ss_pred hhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccC
Q 002716 694 VVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR 742 (889)
Q Consensus 694 ~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~ 742 (889)
.+.|.-+...-...|+.+.+...|++++.+.
T Consensus 1634 ------------------tDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1634 ------------------TDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred ------------------hhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 1244444444455677777788888877654
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.9e-05 Score=84.46 Aligned_cols=117 Identities=16% Similarity=0.088 Sum_probs=88.8
Q ss_pred HHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhc
Q 002716 520 CFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES 599 (889)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~ 599 (889)
.+....++++.|+..++++.+.+|+. ...++.++...++-.+|++.+ ++++..
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pev---------~~~LA~v~l~~~~E~~AI~ll------------------~~aL~~ 229 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPEV---------AVLLARVYLLMNEEVEAIRLL------------------NEALKE 229 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCcH---------HHHHHHHHHhcCcHHHHHHHH------------------HHHHHh
Confidence 33444567777777777777776642 234666666677777775555 788888
Q ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002716 600 DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEE 663 (889)
Q Consensus 600 ~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 663 (889)
.|.+..++...+..+...++++.|+...+++++..|++-..|+.|+.+|...|++++|+..+..
T Consensus 230 ~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 230 NPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 8888888888888888888888888888888888888888888888888888888888866653
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.3e-05 Score=71.27 Aligned_cols=107 Identities=15% Similarity=0.069 Sum_probs=90.5
Q ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHH
Q 002716 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKL----ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAA 554 (889)
Q Consensus 479 ~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p----~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a 554 (889)
+..++..|...+..|+|++|++.|+.+...-| ...+...+|..|+..|++++|+..+++.++++|+++...- +
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdY---a 86 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDY---A 86 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccH---H
Confidence 45678889999999999999999999999888 6788889999999999999999999999999999985443 7
Q ss_pred HHHHHHHHHHhhc---------------hhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHH
Q 002716 555 SQLHMLVREHIDN---------------WTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL 606 (889)
Q Consensus 555 ~~~lg~~~~~~~~---------------~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~ 606 (889)
++..|.++..... ..+| +..+++.+...|++..+
T Consensus 87 ~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A------------------~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 87 YYMRGLSYYEQDEGSLQSFFRSDRDPTPARQA------------------FRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHHHhhhHHhhhcccccCcHHHHHH------------------HHHHHHHHHHCcCChhH
Confidence 8889988887765 3334 45558888888887654
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.7e-05 Score=73.45 Aligned_cols=113 Identities=14% Similarity=0.017 Sum_probs=84.2
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHH
Q 002716 515 LELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 594 (889)
Q Consensus 515 l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~ 594 (889)
+-.-|.-++..|+|++|..-|..+|...|....... ...+...|.+..+++.|+.|+.-. .
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~r-sIly~Nraaa~iKl~k~e~aI~dc------------------s 158 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEER-SILYSNRAAALIKLRKWESAIEDC------------------S 158 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHH-HHHHhhhHHHHHHhhhHHHHHHHH------------------H
Confidence 344578888889999999999999888887764332 235556777778888888884444 8
Q ss_pred HHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 002716 595 QMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGW 646 (889)
Q Consensus 595 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~ 646 (889)
++++++|.+..++.+.|.+|.++..+++|+..|.+.+..+|...++.-..+.
T Consensus 159 Kaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 159 KAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred hhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 8888888888888888888888888888888888888888876655444433
|
|
| >KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.17 E-value=9.9e-07 Score=99.35 Aligned_cols=70 Identities=17% Similarity=0.220 Sum_probs=57.1
Q ss_pred CCCccccEEEEeCCeEEEehHHHHhhcChhhhhhhcCCCCCCCc------------CceEecCCCCCHHHHHHHHHhhcc
Q 002716 177 GDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLC------------EDIDLSENNISPSGLRIISDFSVT 244 (889)
Q Consensus 177 ~~~~~~Dv~~~v~~~~~~~hr~vLaa~s~~F~~mf~~~~~e~~~------------~~i~l~~~~~~~~~~~~ll~~~Yt 244 (889)
+...+.||||.||++.|+|||.||+++|++|+.+|...-+-|.. ..|.+. +|+|..|..+|+|+||
T Consensus 554 ~~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve--~i~p~mfe~lL~~iYt 631 (1267)
T KOG0783|consen 554 YKDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVE--DIPPLMFEILLHYIYT 631 (1267)
T ss_pred cccccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeec--cCCHHHHHHHHHHHhc
Confidence 34557899999999999999999999999999999765433333 334455 5999999999999999
Q ss_pred CCCC
Q 002716 245 GSLN 248 (889)
Q Consensus 245 ~~~~ 248 (889)
+++-
T Consensus 632 dt~~ 635 (1267)
T KOG0783|consen 632 DTLL 635 (1267)
T ss_pred cccc
Confidence 9753
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.15 E-value=7.4e-06 Score=66.78 Aligned_cols=65 Identities=18% Similarity=0.103 Sum_probs=58.2
Q ss_pred HHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHH
Q 002716 614 LLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKA 678 (889)
Q Consensus 614 ~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la 678 (889)
++..|++++|+..|++++..+|++.++++.+|.++...|++++|...+++++..+|++ ..+..++
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 3578999999999999999999999999999999999999999999999999999997 5555544
|
... |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.4e-05 Score=84.03 Aligned_cols=118 Identities=13% Similarity=0.079 Sum_probs=85.4
Q ss_pred HHHHhccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhh
Q 002716 487 SSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHID 566 (889)
Q Consensus 487 ~~~~~~g~~~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~ 566 (889)
..+...++++.|++.+++..+.+|. ....++.++...++..+|++.+.++++..|.+. ..+...+..+...+
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~------~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDS------ELLNLQAEFLLSKK 248 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHhcC
Confidence 3444567777788777777777764 334466777777777778888888887777776 66666777777777
Q ss_pred chhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 002716 567 NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLA 630 (889)
Q Consensus 567 ~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~a 630 (889)
+++.|+... +++.+..|.+...|+.|+.+|...|+++.|+..++.+
T Consensus 249 ~~~lAL~iA------------------k~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 249 KYELALEIA------------------KKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred CHHHHHHHH------------------HHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 777775555 7777888888888888888888888888887666643
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.12 E-value=5.2e-05 Score=68.86 Aligned_cols=97 Identities=22% Similarity=0.155 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCcc-----hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhc
Q 002716 713 QALNNLGSVYVDCGQLDLAADCYSNALKIRHT-----RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEY 787 (889)
Q Consensus 713 ~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~-----~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 787 (889)
.++++++.++...|+.++|+..|++++....+ +++.++|..+...|++++|+..+++.+...|+..
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~--------- 72 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDE--------- 72 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc---------
Confidence 46788899999999999999999999987644 7888899999999999777777777766555311
Q ss_pred CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 002716 788 CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIA 836 (889)
Q Consensus 788 ~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~ 836 (889)
.+......++.++...|+.++|+..+-.++.
T Consensus 73 ------------------~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 73 ------------------LNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ------------------ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1344445567777788888888887766653
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.1e-05 Score=66.72 Aligned_cols=70 Identities=26% Similarity=0.329 Sum_probs=59.1
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHhh
Q 002716 815 AAVLMDSHKENEAIAELSRAIAFKADLH-LLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRV 884 (889)
Q Consensus 815 a~~~~~~g~~~eA~~~l~kal~~~p~~~-~l~l~a~~~~~~g~~~~A~~~~~~al~l~P~~~~~l~l~~~~ 884 (889)
..+|.+.+++++|+..+++++..+|+.. .+..+|.++..+|++.+|++.++++++..|++++...+..++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l 72 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML 72 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence 5678889999999999999999999874 444788888888999999999999999999988887776654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.046 Score=64.44 Aligned_cols=379 Identities=13% Similarity=0.035 Sum_probs=205.3
Q ss_pred CChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhH
Q 002716 477 TLSYPYMYRASSLMTKQNVEAALAEINRILGFKL----ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRV 552 (889)
Q Consensus 477 ~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p----~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 552 (889)
.+++.-..--..++..+-..+-++.+++++-.+. +.....++-.. .-.-|.....++.+++=..|..+
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLt-Aikad~trVm~YI~rLdnyDa~~------- 1053 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILT-AIKADRTRVMEYINRLDNYDAPD------- 1053 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHH-HhhcChHHHHHHHHHhccCCchh-------
Confidence 3444445556778888888888999988764332 11111111111 11223333444444332222111
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHhhhhccc-----ccccchHHHHHHHHhc--CCCChHHHHHHHHHHHHhCCHHHHHH
Q 002716 553 AASQLHMLVREHIDNWTIADCWLQLYDRWSS-----VDDIGSLSVIYQMLES--DAPKGVLYFRQSLLLLRLNCPEAAMR 625 (889)
Q Consensus 553 ~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~-----~dd~~sl~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~ 625 (889)
++.+....+-|++|-..|..++-..+ ++++++++ ++.+. .-+.+.+|..+|.+.+..|...+|++
T Consensus 1054 -----ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ld---RA~efAe~~n~p~vWsqlakAQL~~~~v~dAie 1125 (1666)
T KOG0985|consen 1054 -----IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLD---RAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIE 1125 (1666)
T ss_pred -----HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHH---HHHHHHHhhCChHHHHHHHHHHHhcCchHHHHH
Confidence 22444445555555444433222111 13333332 22221 13467899999999999999999999
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhhhHHHH----
Q 002716 626 SLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDA---- 701 (889)
Q Consensus 626 ~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~A---- 701 (889)
.|-++ +++..+...-.+..+.|+|++-++++..+-+...+...-..+..+|+..+.-. .+++-
T Consensus 1126 Syika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~--------elE~fi~gp 1192 (1666)
T KOG0985|consen 1126 SYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLT--------ELEEFIAGP 1192 (1666)
T ss_pred HHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHH--------HHHHHhcCC
Confidence 99764 56778888888899999999999999988765443311112333333333100 11111
Q ss_pred ---------hcchhhhCc--------hhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--------------------
Q 002716 702 ---------LKCPSDRLR--------KGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-------------------- 744 (889)
Q Consensus 702 ---------l~~~~~~~~--------~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~-------------------- 744 (889)
-++|+.... ...-|..|+..+...|+|..|...-++|-....-
T Consensus 1193 N~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCG 1272 (1666)
T KOG0985|consen 1193 NVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICG 1272 (1666)
T ss_pred CchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcC
Confidence 112222211 1345667888899999999999988887554210
Q ss_pred -------hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHh-c--CCHHHHHHHHHHHHh---c-----CCC
Q 002716 745 -------RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSE-Y--CDRELTRADLEMVTQ---L-----DPL 806 (889)
Q Consensus 745 -------~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~--~~~~~A~~~l~~al~---l-----~p~ 806 (889)
+-+-.+...|...|-+++-+.+++.++......-.++..++. | .+.++-.+.++--.. + .-+
T Consensus 1273 L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskykp~km~EHl~LFwsRvNipKviRA~e 1352 (1666)
T KOG0985|consen 1273 LNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYKPEKMMEHLKLFWSRVNIPKVIRAAE 1352 (1666)
T ss_pred ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 334557778888999999999999988887766666655554 3 233444433332111 0 012
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHH-------------HHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 002716 807 RVYPYRYRAAVLMDSHKENEAIAEL-------------SRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPN 873 (889)
Q Consensus 807 ~~~~~~~la~~~~~~g~~~eA~~~l-------------~kal~~~p~~~~l~l~a~~~~~~g~~~~A~~~~~~al~l~P~ 873 (889)
....|..+.-+|.+-..|+.|.... +..+..-.+.+.++..-.+|.. ....-+.++-.+|.-.-+
T Consensus 1353 qahlW~ElvfLY~~y~eyDNAa~tmm~h~teaw~~~~FKdii~kVaNvElyYkAi~FYl~--~~P~llnDlL~vL~pRlD 1430 (1666)
T KOG0985|consen 1353 QAHLWSELVFLYDKYEEYDNAALTMMEHPTEAWDHGQFKDIITKVANVELYYKAIQFYLD--FHPLLLNDLLTVLSPRLD 1430 (1666)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHhCChhhhhhhhHHHHHHHHhhHHHHHHHHHHHHH--hChHHHHHHHHhcccccC
Confidence 2345666666666666666654322 1111111111222222222222 223334555555555566
Q ss_pred CHHHHHHHHhhhc
Q 002716 874 DQEMLELHSRVYS 886 (889)
Q Consensus 874 ~~~~l~l~~~~~~ 886 (889)
++.+...+++...
T Consensus 1431 h~r~v~~f~K~~~ 1443 (1666)
T KOG0985|consen 1431 HTRTVSIFSKAGQ 1443 (1666)
T ss_pred chHHHHHHHhcCC
Confidence 7777776666543
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=3e-05 Score=74.11 Aligned_cols=96 Identities=24% Similarity=0.296 Sum_probs=51.8
Q ss_pred chhHHHHHhhcCChhHHHHHHHHhhhcCCCCh-----hhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHH
Q 002716 448 LGWMYQERSLYCEGDKRWEDLDKATALDPTLS-----YPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCF 521 (889)
Q Consensus 448 ~g~~~~~~~~~~~~~~A~~~~~~al~~dp~~~-----~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~ 521 (889)
.|.-++..+.| .+|...|..|+++-|... -.|.++|.+++++++++.|+..+.++++++| ...++..+|.+
T Consensus 101 EGN~~F~ngdy---eeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 101 EGNELFKNGDY---EEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHhhhcccH---HHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 44545555555 555555555555555432 2344555555555555555555555555555 44555555555
Q ss_pred HHhcccHHHHHHHHHHHHHhCCCCc
Q 002716 522 FLALEDYQAALCDVQAILTLSPDYR 546 (889)
Q Consensus 522 ~~~~g~~~~A~~~~~~al~~~p~~~ 546 (889)
|.++..|++|+.+|.+++..+|...
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchH
Confidence 5555555555555555555555544
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.033 Score=61.60 Aligned_cols=377 Identities=13% Similarity=0.004 Sum_probs=206.9
Q ss_pred HHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcc
Q 002716 469 DKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (889)
Q Consensus 469 ~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 547 (889)
++-++.+|.+..+|+.+-.-+..+ .+++..+.|++.++..| .+.++.....-.+...+|+.-...|.+.|..--+ .
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-l- 86 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-L- 86 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-H-
Confidence 667889999999999998887777 99999999999999999 8888888888888999999999999998864222 1
Q ss_pred hhhhHHHHH-HHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHH---HHHhcCCCChHHHHHHHHHH---------
Q 002716 548 FEGRVAASQ-LHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY---QMLESDAPKGVLYFRQSLLL--------- 614 (889)
Q Consensus 548 ~~~~~~a~~-~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~---~al~~~p~~~~~~~~la~~~--------- 614 (889)
..|. .+..+....++...+...+ ...++ +-+..++....+|...+..+
T Consensus 87 -----DLW~lYl~YVR~~~~~~~~~r~~m--------------~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ 147 (656)
T KOG1914|consen 87 -----DLWKLYLSYVRETKGKLFGYREKM--------------VQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKY 147 (656)
T ss_pred -----hHHHHHHHHHHHHccCcchHHHHH--------------HHHHHHHHHHhccCcccchhHHHHHHHHHcccccccH
Confidence 1221 1233344444444433333 11122 22235566666666555433
Q ss_pred HHhCCHHHHHHHHHHHHHcCCCcHHHH--------------HHHHHHHHhcCCHHHHHHHHHHHHhc-------CCC---
Q 002716 615 LRLNCPEAAMRSLQLARQHAASDHERL--------------VYEGWILYDTSHCEEGLRKAEESIQM-------KRS--- 670 (889)
Q Consensus 615 ~~~g~~~~A~~~l~~al~~~p~~~~~~--------------~~lg~~~~~~g~~~eA~~~~~~al~~-------~p~--- 670 (889)
..+.+.+.-.+.|++++..--.+.+-+ ...-.+.-....|..|.+.+++...+ +|.
T Consensus 148 ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~ 227 (656)
T KOG1914|consen 148 EENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPP 227 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence 233455666667888875433332211 11111222334566666666665432 111
Q ss_pred -h--------HHHHHHHHHHHHcCCCCCcch----hhhhhHHHHhcchhhhCchhHHHHH-------HHHHHHHcCC---
Q 002716 671 -F--------EAFFLKAYALADSSQDSSCSS----TVVSLLEDALKCPSDRLRKGQALNN-------LGSVYVDCGQ--- 727 (889)
Q Consensus 671 -~--------~a~~~la~~~~~~~~~~~~~~----~~~~~~~~Al~~~~~~~~~~~~~~~-------Lg~~y~~~g~--- 727 (889)
. +.|.++..--...+....... ...=.++.++.++.-. ++.|+. .+.++...|+
T Consensus 228 ~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~---peiWy~~s~yl~~~s~l~~~~~d~~~ 304 (656)
T KOG1914|consen 228 KGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYH---PEIWYDYSMYLIEISDLLTEKGDVPD 304 (656)
T ss_pred CCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhhHHHHHhccccc
Confidence 1 112222222112221111111 1111222222222111 233333 3344444444
Q ss_pred ----hHHHHHHHHHHHccCcc---hHHHHHHHHHHHcC---CHHHHHHHHHHHHHHhccCH-HHHHHHHhc----CCHHH
Q 002716 728 ----LDLAADCYSNALKIRHT---RAHQGLARVHFLKN---NKTTAYEEMTKLIKKARNNA-SAYEKRSEY----CDREL 792 (889)
Q Consensus 728 ----~~~A~~~~~~al~~~p~---~a~~~La~~~~~~g---~~~~A~~~~~~al~~~~~~~-~~~~~~~~~----~~~~~ 792 (889)
.+++..+|+++++.--. ..++.++..-...- +++.-...+++++.....+. -+|.....+ .-...
T Consensus 305 a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlka 384 (656)
T KOG1914|consen 305 AKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKA 384 (656)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHH
Confidence 56778888888765433 33333443322222 35566667777766554221 122222111 23466
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHH-HHHhCCCHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHcc
Q 002716 793 TRADLEMVTQLDPLRVYPYRYRAA-VLMDSHKENEAIAELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAALSV 870 (889)
Q Consensus 793 A~~~l~~al~l~p~~~~~~~~la~-~~~~~g~~~eA~~~l~kal~~~p~~~~l~-l~a~~~~~~g~~~~A~~~~~~al~l 870 (889)
|...|.++-+..-..-.++..-|. -|.-.++..-|...|+-.+...++...+. ....++..+|+-..|...|++++..
T Consensus 385 aR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 385 ARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 677777776653333233333332 24456778888888888888888765444 4455666677888888888888876
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00042 Score=65.75 Aligned_cols=145 Identities=14% Similarity=0.020 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHH
Q 002716 496 EAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILT-LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCW 574 (889)
Q Consensus 496 ~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~ 574 (889)
+.+.....+.+...|.....+.+|......|++.+|...|++++. +..++. ..+..++......+++..|...
T Consensus 73 ~R~~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~------a~lLglA~Aqfa~~~~A~a~~t 146 (251)
T COG4700 73 ERHLREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDA------AMLLGLAQAQFAIQEFAAAQQT 146 (251)
T ss_pred hHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCH------HHHHHHHHHHHhhccHHHHHHH
Confidence 334444444455556555556666666667777777777766664 233333 3444555566666666666444
Q ss_pred HHhhhhcccccccchHHHHHHHHhcCCC--ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcC
Q 002716 575 LQLYDRWSSVDDIGSLSVIYQMLESDAP--KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS 652 (889)
Q Consensus 575 ~~l~~~~~~~dd~~sl~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g 652 (889)
+ ++..+.+|. .+.....+|..+...|++.+|...|+.++...|+ +.+....+..+..+|
T Consensus 147 L------------------e~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qg 207 (251)
T COG4700 147 L------------------EDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQG 207 (251)
T ss_pred H------------------HHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhc
Confidence 4 555555553 3445566777778888888888888888887776 666666777777778
Q ss_pred CHHHHHHHHHHHH
Q 002716 653 HCEEGLRKAEESI 665 (889)
Q Consensus 653 ~~~eA~~~~~~al 665 (889)
+.++|...+....
T Consensus 208 r~~ea~aq~~~v~ 220 (251)
T COG4700 208 RLREANAQYVAVV 220 (251)
T ss_pred chhHHHHHHHHHH
Confidence 7777766655443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.8e-05 Score=65.59 Aligned_cols=62 Identities=19% Similarity=0.223 Sum_probs=59.4
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh
Q 002716 610 QSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (889)
Q Consensus 610 la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 671 (889)
+..+|...+++++|+..+++++..+|+++..+..+|.++..+|++++|++.++++++..|+.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 35688999999999999999999999999999999999999999999999999999999988
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.04 E-value=5.6e-05 Score=67.17 Aligned_cols=87 Identities=22% Similarity=0.216 Sum_probs=69.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHcCCHHHHH
Q 002716 787 YCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL-----HLLHLRAAFHEHTGDVLGAL 861 (889)
Q Consensus 787 ~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~-----~~l~l~a~~~~~~g~~~~A~ 861 (889)
-|+.+.|++.|.+++.+-|.++.+|+++|..+.-+|+.++|+..+++++++..+- ..+..++.+|..+|+-+.|.
T Consensus 56 ~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR 135 (175)
T KOG4555|consen 56 AGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAAR 135 (175)
T ss_pred ccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHH
Confidence 3666888888888888888888888888888888888888888888888876552 44457888888888888888
Q ss_pred HHHHHHHccCCC
Q 002716 862 RDCRAALSVDPN 873 (889)
Q Consensus 862 ~~~~~al~l~P~ 873 (889)
.+|+.|-++...
T Consensus 136 ~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 136 ADFEAAAQLGSK 147 (175)
T ss_pred HhHHHHHHhCCH
Confidence 888888776543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.9e-05 Score=64.40 Aligned_cols=67 Identities=12% Similarity=-0.008 Sum_probs=60.0
Q ss_pred HHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHH
Q 002716 563 EHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLV 642 (889)
Q Consensus 563 ~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 642 (889)
...|++++|+..+ ++++..+|++..+++.+|.+|.+.|++++|...+++++..+|+++..+.
T Consensus 2 l~~~~~~~A~~~~------------------~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 63 (68)
T PF14559_consen 2 LKQGDYDEAIELL------------------EKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQ 63 (68)
T ss_dssp HHTTHHHHHHHHH------------------HHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHH
T ss_pred hhccCHHHHHHHH------------------HHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 4678999997777 9999999999999999999999999999999999999999999888877
Q ss_pred HHHHH
Q 002716 643 YEGWI 647 (889)
Q Consensus 643 ~lg~~ 647 (889)
.++.+
T Consensus 64 l~a~i 68 (68)
T PF14559_consen 64 LLAQI 68 (68)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 76653
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00032 Score=70.08 Aligned_cols=59 Identities=10% Similarity=0.015 Sum_probs=35.2
Q ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 002716 481 PYMYRASSLMTKQNVEAALAEINRILGFKL--ALECLELRFCFFLALEDYQAALCDVQAIL 539 (889)
Q Consensus 481 a~~~la~~~~~~g~~~~Al~~l~kal~~~p--~~~~l~~~a~~~~~~g~~~~A~~~~~~al 539 (889)
..+.++.++...|.|.-.+..++++++.+| .+.....+|.+..+.||.+.|..+++.+-
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ve 239 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVE 239 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 344555556666666666666666666654 55555566666666666666666665443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00018 Score=66.50 Aligned_cols=127 Identities=17% Similarity=0.146 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc-----hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHh
Q 002716 712 GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-----RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSE 786 (889)
Q Consensus 712 ~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~-----~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 786 (889)
+..++.-|...+..|+|++|++.|+......|. .+...|+.+|+..|++++|+..+++.|+.+|.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~---------- 79 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT---------- 79 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----------
Confidence 445555566666666666666666666655554 55555666666666665555555555555552
Q ss_pred cCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002716 787 YCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRA 866 (889)
Q Consensus 787 ~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~l~l~a~~~~~~g~~~~A~~~~~~ 866 (889)
+|+-.++++..|.+++.... . .+......+-|. +....|...|++
T Consensus 80 -----------------hp~vdYa~Y~~gL~~~~~~~--~---~~~~~~~~drD~-------------~~~~~A~~~f~~ 124 (142)
T PF13512_consen 80 -----------------HPNVDYAYYMRGLSYYEQDE--G---SLQSFFRSDRDP-------------TPARQAFRDFEQ 124 (142)
T ss_pred -----------------CCCccHHHHHHHHHHHHHhh--h---HHhhhcccccCc-------------HHHHHHHHHHHH
Confidence 34555566666655554432 1 111111111111 235688888888
Q ss_pred HHccCCCCHHHHHHHHh
Q 002716 867 ALSVDPNDQEMLELHSR 883 (889)
Q Consensus 867 al~l~P~~~~~l~l~~~ 883 (889)
.++..|++..+.+.-.|
T Consensus 125 lv~~yP~S~ya~dA~~R 141 (142)
T PF13512_consen 125 LVRRYPNSEYAADARKR 141 (142)
T ss_pred HHHHCcCChhHHHHHhc
Confidence 88888888777665444
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.023 Score=64.39 Aligned_cols=104 Identities=13% Similarity=0.084 Sum_probs=50.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHccCcchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhc---CCHHHHH
Q 002716 718 LGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEY---CDRELTR 794 (889)
Q Consensus 718 Lg~~y~~~g~~~~A~~~~~~al~~~p~~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~---~~~~~A~ 794 (889)
-|..+...|+++.|+..|-.|-.. ..-........+|.+|+..+..+-......+........| |+++.|.
T Consensus 712 wg~hl~~~~q~daainhfiea~~~------~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae 785 (1636)
T KOG3616|consen 712 WGDHLEQIGQLDAAINHFIEANCL------IKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAE 785 (1636)
T ss_pred HhHHHHHHHhHHHHHHHHHHhhhH------HHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHH
Confidence 356666778888887777554321 1112223344566666665555443333222111111112 5556666
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 002716 795 ADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAI 835 (889)
Q Consensus 795 ~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal 835 (889)
..|.++-. ...--..|-+.|++.+|...-++..
T Consensus 786 ~lf~e~~~--------~~dai~my~k~~kw~da~kla~e~~ 818 (1636)
T KOG3616|consen 786 ELFTEADL--------FKDAIDMYGKAGKWEDAFKLAEECH 818 (1636)
T ss_pred HHHHhcch--------hHHHHHHHhccccHHHHHHHHHHhc
Confidence 66554421 1122234556667766666655543
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.052 Score=59.28 Aligned_cols=396 Identities=14% Similarity=0.044 Sum_probs=225.6
Q ss_pred hHHHHHHHHhhhcCCCC---hhhHHHHHHHH-HhccCHHHHHHHHHHHHcCC---C-----CHHHHHHHHHHHHhcc-cH
Q 002716 462 DKRWEDLDKATALDPTL---SYPYMYRASSL-MTKQNVEAALAEINRILGFK---L-----ALECLELRFCFFLALE-DY 528 (889)
Q Consensus 462 ~~A~~~~~~al~~dp~~---~~a~~~la~~~-~~~g~~~~Al~~l~kal~~~---p-----~~~~l~~~a~~~~~~g-~~ 528 (889)
++++.+++......|.. +.....+|.++ .-.++++.|...++++..+. | ..++..+++.+|.... .+
T Consensus 26 kk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~ 105 (629)
T KOG2300|consen 26 KKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSF 105 (629)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCC
Confidence 56667776666655543 23456677654 56889999999999996543 2 3456778888888777 88
Q ss_pred HHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHH
Q 002716 529 QAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYF 608 (889)
Q Consensus 529 ~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~ 608 (889)
..|...+++++++..+.+.... .....|+.+..-..++..|.+.+. -...+.|.+.. ....+.+
T Consensus 106 ~~~KalLrkaielsq~~p~wsc--kllfQLaql~~idkD~~sA~elLa--vga~sAd~~~~------------~ylr~~f 169 (629)
T KOG2300|consen 106 PPAKALLRKAIELSQSVPYWSC--KLLFQLAQLHIIDKDFPSALELLA--VGAESADHICF------------PYLRMLF 169 (629)
T ss_pred chHHHHHHHHHHHhcCCchhhH--HHHHHHHHHHhhhccchhHHHHHh--ccccccchhhh------------HHHHHHH
Confidence 9999999999999888875444 567788889999999999966550 00000011000 0001112
Q ss_pred HH--HHHHHHhCCH---HHHHHHHHHHHHcCCCcHH-------HHHHHHHH-HHhcCCHHHHHHHH---HHHHhc-CC--
Q 002716 609 RQ--SLLLLRLNCP---EAAMRSLQLARQHAASDHE-------RLVYEGWI-LYDTSHCEEGLRKA---EESIQM-KR-- 669 (889)
Q Consensus 609 ~l--a~~~~~~g~~---~~A~~~l~~al~~~p~~~~-------~~~~lg~~-~~~~g~~~eA~~~~---~~al~~-~p-- 669 (889)
.+ +.++....+. ..+.....+..+....|+. -+..+-.. |...|+...+.... ++.+.. .+
T Consensus 170 tls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~ 249 (629)
T KOG2300|consen 170 TLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSS 249 (629)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCC
Confidence 22 2222322233 3333334444443333221 12222233 33456655444444 333321 11
Q ss_pred -----------Ch--HHHHHH----HHHHHHc---CCCCCcchhhhhhHHHHhcchhhhCch-----------hHHHHHH
Q 002716 670 -----------SF--EAFFLK----AYALADS---SQDSSCSSTVVSLLEDALKCPSDRLRK-----------GQALNNL 718 (889)
Q Consensus 670 -----------~~--~a~~~l----a~~~~~~---~~~~~~~~~~~~~~~~Al~~~~~~~~~-----------~~~~~~L 718 (889)
.- -.|.-. +.++... +...+-.+.+.+.-++++...++..+. ...+-.+
T Consensus 250 ~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~i 329 (629)
T KOG2300|consen 250 RGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHI 329 (629)
T ss_pred CCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 11 111111 1111111 101111223333444454443333111 3345566
Q ss_pred HHHHHHcCChHHHHHHHHHHHcc---Ccc---------hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc-CHHHHHHHH
Q 002716 719 GSVYVDCGQLDLAADCYSNALKI---RHT---------RAHQGLARVHFLKNNKTTAYEEMTKLIKKARN-NASAYEKRS 785 (889)
Q Consensus 719 g~~y~~~g~~~~A~~~~~~al~~---~p~---------~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~ 785 (889)
..+-.-.|++.+|++....+.+. .|. ..+..+|......|.++.|...+..+.+.-.. +-++..+..
T Consensus 330 v~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nln 409 (629)
T KOG2300|consen 330 VMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLN 409 (629)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 77777889999999877766543 343 55666888888889999999999988876542 222222211
Q ss_pred h---cCCHHHHHHHHHHHHhcCCCC----------hHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCH-------HHHH
Q 002716 786 E---YCDRELTRADLEMVTQLDPLR----------VYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL-------HLLH 845 (889)
Q Consensus 786 ~---~~~~~~A~~~l~~al~l~p~~----------~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~-------~~l~ 845 (889)
. |-+...+...++-.-.+.|.+ ..+++..|...+..+++.||...+.+.++..... -.+.
T Consensus 410 lAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~Lv 489 (629)
T KOG2300|consen 410 LAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLV 489 (629)
T ss_pred HHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHH
Confidence 1 212222333333323345543 3456677888889999999999999999876332 1222
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 002716 846 LRAAFHEHTGDVLGALRDCRAALSVDPN 873 (889)
Q Consensus 846 l~a~~~~~~g~~~~A~~~~~~al~l~P~ 873 (889)
+++.+....|+..++.+..+-++++..+
T Consensus 490 LLs~v~lslgn~~es~nmvrpamqlAkK 517 (629)
T KOG2300|consen 490 LLSHVFLSLGNTVESRNMVRPAMQLAKK 517 (629)
T ss_pred HHHHHHHHhcchHHHHhccchHHHHHhc
Confidence 6778888889999999999998877533
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00015 Score=73.94 Aligned_cols=107 Identities=12% Similarity=-0.046 Sum_probs=94.1
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHH
Q 002716 482 YMYRASSLMTKQNVEAALAEINRILGFKL----ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQL 557 (889)
Q Consensus 482 ~~~la~~~~~~g~~~~Al~~l~kal~~~p----~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~ 557 (889)
.|..|.-++..|+|..|...|..-++.-| .+++++++|.+++.+|+|+.|...|..+.+..|+++... +++.-
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KAp---dallK 220 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAP---DALLK 220 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCCh---HHHHH
Confidence 67888889999999999999999999888 688999999999999999999999999999988877433 47889
Q ss_pred HHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHH
Q 002716 558 HMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFR 609 (889)
Q Consensus 558 lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~ 609 (889)
+|.+...+|+.++|...+ +++++..|+...+...
T Consensus 221 lg~~~~~l~~~d~A~atl------------------~qv~k~YP~t~aA~~A 254 (262)
T COG1729 221 LGVSLGRLGNTDEACATL------------------QQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHHHHhcCHHHHHHHH------------------HHHHHHCCCCHHHHHH
Confidence 999999999999997766 9999999988776543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=3.3e-05 Score=84.30 Aligned_cols=70 Identities=10% Similarity=0.017 Sum_probs=66.6
Q ss_pred hcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002716 598 ESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHER---LVYEGWILYDTSHCEEGLRKAEESIQM 667 (889)
Q Consensus 598 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~---~~~lg~~~~~~g~~~eA~~~~~~al~~ 667 (889)
..+|+++..++++|.+|...|++++|+..|+++++++|++.++ ++++|.+|..+|++++|+..+++++++
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3579999999999999999999999999999999999999865 999999999999999999999999987
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00022 Score=72.75 Aligned_cols=106 Identities=14% Similarity=0.015 Sum_probs=81.6
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHH
Q 002716 515 LELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 594 (889)
Q Consensus 515 l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~ 594 (889)
++..|.-++..|+|..|...|.+-++..|+..... .+++.||.+++.+|+++.|...| .
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~---nA~yWLGe~~y~qg~y~~Aa~~f------------------~ 202 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTP---NAYYWLGESLYAQGDYEDAAYIF------------------A 202 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccc---hhHHHHHHHHHhcccchHHHHHH------------------H
Confidence 66667888889999999999999999999987333 47888888888888888886666 5
Q ss_pred HHHhcCC---CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHH
Q 002716 595 QMLESDA---PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERL 641 (889)
Q Consensus 595 ~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~ 641 (889)
.+.+..| .-++.++.+|.+..++|+.++|...|+++++..|+...+.
T Consensus 203 ~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 203 RVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 5555544 4456778888888888888888888888888888765543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.86 E-value=4.1e-05 Score=64.32 Aligned_cols=63 Identities=29% Similarity=0.361 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHccC---c-c-----hHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 002716 712 GQALNNLGSVYVDCGQLDLAADCYSNALKIR---H-T-----RAHQGLARVHFLKNNKTTAYEEMTKLIKKA 774 (889)
Q Consensus 712 ~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~---p-~-----~a~~~La~~~~~~g~~~~A~~~~~~al~~~ 774 (889)
+.++.++|.+|...|++++|+.+|++++++. + + .++.++|.++...|++++|++.+++++++.
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 4689999999999999999999999999762 1 1 688899999999999999999999998764
|
... |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0014 Score=62.25 Aligned_cols=124 Identities=20% Similarity=0.163 Sum_probs=80.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHccC--cc-hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhcCCHH
Q 002716 715 LNNLGSVYVDCGQLDLAADCYSNALKIR--HT-RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRE 791 (889)
Q Consensus 715 ~~~Lg~~y~~~g~~~~A~~~~~~al~~~--p~-~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 791 (889)
.+.||......|++.+|...|++++.-- .+ ..+.++++..+..+++..|.
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~--------------------------- 144 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQ--------------------------- 144 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHH---------------------------
Confidence 3445555555555555555555555321 11 44455555555555554444
Q ss_pred HHHHHHHHHHhcCCC--ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002716 792 LTRADLEMVTQLDPL--RVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAAL 868 (889)
Q Consensus 792 ~A~~~l~~al~l~p~--~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~l~l~a~~~~~~g~~~~A~~~~~~al 868 (889)
..+++..+.+|. .+.....+|.++...|++.+|...|+.++...|++..-...+.....+|+..+|...+..+.
T Consensus 145 ---~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 145 ---QTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred ---HHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 444444444443 35567778889999999999999999999999998666666677777788888777665554
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00049 Score=61.33 Aligned_cols=86 Identities=20% Similarity=0.098 Sum_probs=40.8
Q ss_pred HHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHH
Q 002716 486 ASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREH 564 (889)
Q Consensus 486 a~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~ 564 (889)
|..+.+.|+.+.|++.|.+++.+.| .+.+|.+++..+.-+|+.++|+..+++++++.-....... .++...|.+|..
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtac--qa~vQRg~lyRl 127 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTAC--QAFVQRGLLYRL 127 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHH--HHHHHHHHHHHH
Confidence 4444445555555555555555555 4455555555555555555555555555544333321211 344444555555
Q ss_pred hhchhHHHH
Q 002716 565 IDNWTIADC 573 (889)
Q Consensus 565 ~~~~~~A~~ 573 (889)
.|+-+.|..
T Consensus 128 ~g~dd~AR~ 136 (175)
T KOG4555|consen 128 LGNDDAARA 136 (175)
T ss_pred hCchHHHHH
Confidence 555444433
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.79 E-value=3.2e-05 Score=64.99 Aligned_cols=65 Identities=15% Similarity=0.134 Sum_probs=55.3
Q ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---CC-C---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002716 603 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQH---AA-S---DHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (889)
Q Consensus 603 ~~~~~~~la~~~~~~g~~~~A~~~l~~al~~---~p-~---~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 667 (889)
-..++.++|.+|..+|++++|+.+|+++++. .+ + ...++.++|.++...|++++|++++++++++
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3567899999999999999999999999865 22 2 2457899999999999999999999999865
|
... |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0055 Score=60.93 Aligned_cols=58 Identities=7% Similarity=-0.053 Sum_probs=40.2
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHH
Q 002716 518 RFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWL 575 (889)
Q Consensus 518 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~ 575 (889)
-+..|....+|++|...+.++.+-..++...+.-..++-..+.+......+.++..++
T Consensus 37 AAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~ 94 (308)
T KOG1585|consen 37 AAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLY 94 (308)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3566777788888888888888766666655554555666666667777777776666
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=8.8e-05 Score=81.07 Aligned_cols=70 Identities=20% Similarity=0.111 Sum_probs=65.2
Q ss_pred hcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHH---HHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q 002716 473 ALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALE---CLELRFCFFLALEDYQAALCDVQAILTLS 542 (889)
Q Consensus 473 ~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~---~l~~~a~~~~~~g~~~~A~~~~~~al~~~ 542 (889)
..+|+++.+|+++|..|+..|+|++|+..|++++.++| +.. +++++|.+|..+|++++|+..+++++++.
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 35899999999999999999999999999999999999 553 59999999999999999999999999973
|
|
| >KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00021 Score=71.43 Aligned_cols=95 Identities=20% Similarity=0.308 Sum_probs=82.6
Q ss_pred EEEEeCCeEEEehHHHHhhcChhhhhhhcCCCC-C-CCcCceEecCCCCCHHHHHHHHHhhccCCCCCCC--HHHHHHHH
Q 002716 184 VVFRIHEEKIECDRQKFAALSAPFSAMLNGSFM-E-SLCEDIDLSENNISPSGLRIISDFSVTGSLNGVT--PNLLLEIL 259 (889)
Q Consensus 184 v~~~v~~~~~~~hr~vLaa~s~~F~~mf~~~~~-e-~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~--~~~~~~ll 259 (889)
|.+-|||..|..++.-|.....+|++||.+++. + .....|-|. =||.-|..+|+||..|.+. ++ ...+.+|+
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFID---RSpKHF~~ILNfmRdGdv~-LPe~~kel~El~ 82 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFID---RSPKHFDTILNFMRDGDVD-LPESEKELKELL 82 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEec---CChhHHHHHHHhhhccccc-CccchHHHHHHH
Confidence 557899999999999999999999999999873 2 234678887 6999999999999988887 76 45788999
Q ss_pred HHHHHHcHHHHHHHHHHHHHhhc
Q 002716 260 IFANKFCCERLKDACDRKLASLV 282 (889)
Q Consensus 260 ~~A~~~~~~~l~~~~~~~l~~~~ 282 (889)
.=|..|.++.|.+.|...++...
T Consensus 83 ~EA~fYlL~~Lv~~C~~~i~~~~ 105 (230)
T KOG2716|consen 83 REAEFYLLDGLVELCQSAIARLI 105 (230)
T ss_pred HHHHHhhHHHHHHHHHHHhhhcc
Confidence 99999999999999999887764
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00019 Score=68.40 Aligned_cols=98 Identities=16% Similarity=0.182 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCCC
Q 002716 620 PEAAMRSLQLARQHAASDHERLVYEGWILYDTSH----------CEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDS 688 (889)
Q Consensus 620 ~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~----------~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~~~~~ 688 (889)
++.|.+.++.....+|.+++.+++-|.++..+.+ +++|+..|++++.++|+. .+++.+|.++...+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A--- 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA--- 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH---
Confidence 6788889999999999999999888888776533 568899999999999999 99999999887765
Q ss_pred CcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcchHH
Q 002716 689 SCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAH 747 (889)
Q Consensus 689 ~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~~a~ 747 (889)
.+ ....-....-|++|..+|++|.+.+|....
T Consensus 84 --------~l-------------------~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 84 --------FL-------------------TPDTAEAEEYFEKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp --------HH----------------------HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred --------hh-------------------cCChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 10 011112223478889999999999987433
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.65 E-value=3.8e-05 Score=76.13 Aligned_cols=115 Identities=23% Similarity=0.267 Sum_probs=77.4
Q ss_pred EEEehHHHHhhcChhhhhhhcCCCCCCC---------cCceEecCCCCCHHHHH-HHHHhhccCCCCCCCHHHHHHHHHH
Q 002716 192 KIECDRQKFAALSAPFSAMLNGSFMESL---------CEDIDLSENNISPSGLR-IISDFSVTGSLNGVTPNLLLEILIF 261 (889)
Q Consensus 192 ~~~~hr~vLaa~s~~F~~mf~~~~~e~~---------~~~i~l~~~~~~~~~~~-~ll~~~Yt~~~~~~~~~~~~~ll~~ 261 (889)
+|+||+.|.++||++||.++....+|.+ ..+|.+.+ -|=|.+|. .+++|+||+.++ ++ +
T Consensus 262 eikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE-~I~PkafA~i~lhclYTD~lD-lS---------l 330 (401)
T KOG2838|consen 262 EIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDE-LIFPKAFAPIFLHCLYTDRLD-LS---------L 330 (401)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechh-hhcchhhhhhhhhhheecccc-hh---------h
Confidence 7999999999999999999986655432 24677776 56666665 578999999998 43 1
Q ss_pred HHHHcHHHHHHHHHHH-HH--hhc--CCHHHHHHHHHHHHHcCChhhHHHHHHHHhhhcccc
Q 002716 262 ANKFCCERLKDACDRK-LA--SLV--ASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDC 318 (889)
Q Consensus 262 A~~~~~~~l~~~~~~~-l~--~~~--~~~~~~~~~~~~a~~~~~~~l~~~c~~~~~~~l~~~ 318 (889)
|.+ |.+.+-..-+.. +. -.. .-.+.|+.+++.|+-.....|+..|-.|+..+....
T Consensus 331 ~hk-ce~SigSLSeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQa~e~Vir~acaad 391 (401)
T KOG2838|consen 331 AHK-CEDSIGSLSEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQACEDVIRKACAAD 391 (401)
T ss_pred ccc-CCcccccHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 221 111111111110 10 001 125788899999999888999999999998876443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0013 Score=65.87 Aligned_cols=140 Identities=12% Similarity=0.085 Sum_probs=117.8
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhC-CCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHH
Q 002716 514 CLELRFCFFLALEDYQAALCDVQAILTLS-PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 592 (889)
Q Consensus 514 ~l~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~ 592 (889)
..+.+..++...|+|.-....+.++++.+ |..+ .....||.+..+.|+.+.|..+|+-.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p------~L~s~Lgr~~MQ~GD~k~a~~yf~~vek------------ 240 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEP------QLLSGLGRISMQIGDIKTAEKYFQDVEK------------ 240 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccH------HHHHHHHHHHHhcccHHHHHHHHHHHHH------------
Confidence 45667888899999999999999999988 4455 5666799999999999999888821111
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh
Q 002716 593 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (889)
Q Consensus 593 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 671 (889)
..+-+..-..+..+..+.+.+|.-.+++..|...+.+.+..+|.++.+-++.|.++...|+...|++..+.++...|..
T Consensus 241 ~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 241 VTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 1233333455666778889999999999999999999999999999999999999999999999999999999999986
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.041 Score=54.64 Aligned_cols=67 Identities=10% Similarity=0.108 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHc-CChHHHHHHHHHHHccCcc--------hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHH
Q 002716 714 ALNNLGSVYVDC-GQLDLAADCYSNALKIRHT--------RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASA 780 (889)
Q Consensus 714 ~~~~Lg~~y~~~-g~~~~A~~~~~~al~~~p~--------~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 780 (889)
-+..+|.+|... .++++|+.+|+++-+.... ..+...|..-...++|.+|++.|+++....-++..+
T Consensus 115 ~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LL 190 (288)
T KOG1586|consen 115 HHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLL 190 (288)
T ss_pred hhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence 456678888755 8899999999998775433 455567777778889999999998887766655443
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0076 Score=59.59 Aligned_cols=139 Identities=14% Similarity=0.088 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--------hHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhccCHHHHHH
Q 002716 713 QALNNLGSVYVDCGQLDLAADCYSNALKIRHT--------RAHQGLARVHFLK-NNKTTAYEEMTKLIKKARNNASAYEK 783 (889)
Q Consensus 713 ~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--------~a~~~La~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~ 783 (889)
..|...+.+|. .++.++|+.++++++++..+ .-+..+|.+|... .++++|+..|+++-+......
T Consensus 75 t~YveA~~cyk-k~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ee----- 148 (288)
T KOG1586|consen 75 TTYVEAANCYK-KVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEE----- 148 (288)
T ss_pred HHHHHHHHHhh-ccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchh-----
Confidence 34444444443 34777777777777765433 1223344444433 455555555555544333110
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHH--------HHHHHHHHHHcC
Q 002716 784 RSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHL--------LHLRAAFHEHTG 855 (889)
Q Consensus 784 ~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~--------l~l~a~~~~~~g 855 (889)
. ...-...+.-.|..-...++|.+|+..|++.....-++.. +...+.++....
T Consensus 149 ---------s----------~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~ 209 (288)
T KOG1586|consen 149 ---------S----------VSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKA 209 (288)
T ss_pred ---------h----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcc
Confidence 0 0011122333444445566777777777776654443221 123455666666
Q ss_pred CHHHHHHHHHHHHccCCCCHH
Q 002716 856 DVLGALRDCRAALSVDPNDQE 876 (889)
Q Consensus 856 ~~~~A~~~~~~al~l~P~~~~ 876 (889)
|.-.|...+++-.+++|.-.+
T Consensus 210 D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 210 DEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred cHHHHHHHHHHHHhcCCcccc
Confidence 776777777777777776544
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0062 Score=63.14 Aligned_cols=158 Identities=16% Similarity=0.098 Sum_probs=121.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHccCcc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHH-hccCHHHHHHH-------HhcC
Q 002716 719 GSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKK-ARNNASAYEKR-------SEYC 788 (889)
Q Consensus 719 g~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~-------~~~~ 788 (889)
+.+....|+..+|...+++.++..|+ -++..--.+++..|+...-...+++++.. +++.+-.-+.. .+.|
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 44556789999999999999999999 55555667889999999999999999887 56553322222 2237
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHcCCHHHHHHH
Q 002716 789 DRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL-----HLLHLRAAFHEHTGDVLGALRD 863 (889)
Q Consensus 789 ~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~-----~~l~l~a~~~~~~g~~~~A~~~ 863 (889)
-+++|.+.-.++++++|.+..+....+.++...|++.++.+...+--..-.+. ..+.--+.++...+.|+.|++.
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 89999999999999999999999999999999999999999887643322221 2223567778777999999999
Q ss_pred HHHHH--ccCCCCHH
Q 002716 864 CRAAL--SVDPNDQE 876 (889)
Q Consensus 864 ~~~al--~l~P~~~~ 876 (889)
|.+-+ ++..+|..
T Consensus 270 yD~ei~k~l~k~Da~ 284 (491)
T KOG2610|consen 270 YDREIWKRLEKDDAV 284 (491)
T ss_pred HHHHHHHHhhccchh
Confidence 97544 34455553
|
|
| >KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00033 Score=58.13 Aligned_cols=79 Identities=24% Similarity=0.338 Sum_probs=63.4
Q ss_pred EEEEe-CCeEEEehHHHHhhcChhhhhhhcCCCCCC--CcCceEecCCCCCHHHHHHHHHhh-----ccCC---CCC--C
Q 002716 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMES--LCEDIDLSENNISPSGLRIISDFS-----VTGS---LNG--V 250 (889)
Q Consensus 184 v~~~v-~~~~~~~hr~vLaa~s~~F~~mf~~~~~e~--~~~~i~l~~~~~~~~~~~~ll~~~-----Yt~~---~~~--~ 250 (889)
|+++. +|.+|-..|-+ |.-|+-.|+||+|...++ ...+|.+++ |....++.+.+|+ ||+. ++. |
T Consensus 19 VkLvS~Ddhefiikre~-AmtSgTiraml~gpg~~se~~~n~v~f~d--i~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~I 95 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKREH-AMTSGTIRAMLSGPGVFSEAEKNEVYFRD--IPSHILEKVCEYLAYKVRYTNSSTEIPEFDI 95 (112)
T ss_pred eEeecCCCcEEEEeehh-hhhhhHHHHHHcCCccccccccceEEecc--chHHHHHHHHHHhhheeeeccccccCCCCCC
Confidence 55554 67778776664 788999999999876555 457999996 9999999999997 6665 222 7
Q ss_pred CHHHHHHHHHHHHHH
Q 002716 251 TPNLLLEILIFANKF 265 (889)
Q Consensus 251 ~~~~~~~ll~~A~~~ 265 (889)
+++.+++||.+|+.+
T Consensus 96 ppemaleLL~aAn~L 110 (112)
T KOG3473|consen 96 PPEMALELLMAANYL 110 (112)
T ss_pred CHHHHHHHHHHhhhh
Confidence 899999999999987
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0014 Score=62.61 Aligned_cols=95 Identities=12% Similarity=-0.002 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchh---HHHHHHHhhhhcccccccchHHHHHHHHhcCCCCh
Q 002716 528 YQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWT---IADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG 604 (889)
Q Consensus 528 ~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~---~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~ 604 (889)
|+.|.+.++.....+|.+. +.++.-|.++..+.++. ++..++ ..++..+++++.++|+..
T Consensus 7 FE~ark~aea~y~~nP~Da------dnL~~WG~ALLELAqfk~g~es~~mi-----------edAisK~eeAL~I~P~~h 69 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDA------DNLTNWGGALLELAQFKQGPESKKMI-----------EDAISKFEEALKINPNKH 69 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-H------HHHHHHHHHHHHHHHHS-HHHHHHHH-----------HHHHHHHHHHHHH-TT-H
T ss_pred HHHHHHHHHHHHHhCcHhH------HHHHHHHHHHHHHHhccCcchHHHHH-----------HHHHHHHHHHHhcCCchH
Confidence 6788899999999999998 66666666666655543 343333 123666799999999999
Q ss_pred HHHHHHHHHHHHhCC-----------HHHHHHHHHHHHHcCCCcHH
Q 002716 605 VLYFRQSLLLLRLNC-----------PEAAMRSLQLARQHAASDHE 639 (889)
Q Consensus 605 ~~~~~la~~~~~~g~-----------~~~A~~~l~~al~~~p~~~~ 639 (889)
.+++.+|.+|..++. |++|..+|++|.+.+|++..
T Consensus 70 dAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 70 DALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 999999999887653 45555566666666665443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00047 Score=74.41 Aligned_cols=146 Identities=14% Similarity=0.114 Sum_probs=102.9
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hcCCChHHHHHHHHHHHHcCCC
Q 002716 609 RQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI-QMKRSFEAFFLKAYALADSSQD 687 (889)
Q Consensus 609 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al-~~~p~~~a~~~la~~~~~~~~~ 687 (889)
.....|+...+...+.+..+.+.....+.+.++...+..+|-.|++.+|.+.+..+- ...|..
T Consensus 211 ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~---------------- 274 (696)
T KOG2471|consen 211 YKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGG---------------- 274 (696)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCc----------------
Confidence 344456777788888888888888888889999999999999999999998765431 111111
Q ss_pred CCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHcc---------Ccc-----------hHH
Q 002716 688 SSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI---------RHT-----------RAH 747 (889)
Q Consensus 688 ~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~---------~p~-----------~a~ 747 (889)
.....+.....|+|+|.+++..|.|..+..+|.+|++. .|. ..+
T Consensus 275 ----------------~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eil 338 (696)
T KOG2471|consen 275 ----------------TITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEIL 338 (696)
T ss_pred ----------------cccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhH
Confidence 00000011246677888888888888888888888741 111 677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHh
Q 002716 748 QGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSE 786 (889)
Q Consensus 748 ~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 786 (889)
++.|..|...|+...|.+.|.++......++.+|..+++
T Consensus 339 YNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAE 377 (696)
T KOG2471|consen 339 YNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAE 377 (696)
T ss_pred HhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 788888888888888888888888877777777766655
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0068 Score=66.63 Aligned_cols=145 Identities=12% Similarity=0.015 Sum_probs=99.7
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCC
Q 002716 609 RQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDS 688 (889)
Q Consensus 609 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~ 688 (889)
.+..-..+..++++-++.-++|++++|+-+.++..++.-. .....+|.++|+++++..... +.........|
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~---lg~s~~~~~~g--- 244 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEAS---LGKSQFLQHHG--- 244 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHh---hchhhhhhccc---
Confidence 3444456777888889999999999999889888776532 345788999999988654332 00000000111
Q ss_pred CcchhhhhhHHHHhcchhhhCch-hHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc----hHHHHHHHHHHHcCCHHHH
Q 002716 689 SCSSTVVSLLEDALKCPSDRLRK-GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT----RAHQGLARVHFLKNNKTTA 763 (889)
Q Consensus 689 ~~~~~~~~~~~~Al~~~~~~~~~-~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~----~a~~~La~~~~~~g~~~~A 763 (889)
..-+. ...+..+. ..+-..++.+..+.|+.++|++.|+..++..|. .++.+|..++...+.+.++
T Consensus 245 --------~~~e~--~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~ 314 (539)
T PF04184_consen 245 --------HFWEA--WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADV 314 (539)
T ss_pred --------chhhh--hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHH
Confidence 00000 01111111 345567999999999999999999999988776 6889999999999999999
Q ss_pred HHHHHHHH
Q 002716 764 YEEMTKLI 771 (889)
Q Consensus 764 ~~~~~~al 771 (889)
...+.+.-
T Consensus 315 q~lL~kYd 322 (539)
T PF04184_consen 315 QALLAKYD 322 (539)
T ss_pred HHHHHHhc
Confidence 88887753
|
The molecular function of this protein is uncertain. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.04 Score=64.73 Aligned_cols=296 Identities=19% Similarity=0.062 Sum_probs=142.6
Q ss_pred hhHHHhcccHHHHHHHHHHHHHcCcchhHhhHHHHHhhcCCcHHHHHHHhhhhhccCcchhHHHHHhhcCChhHHHHHHH
Q 002716 390 GCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLD 469 (889)
Q Consensus 390 G~~~~~~g~~~eA~~~~~~al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~ 469 (889)
|..-...|+..+|.++|+.+.+.|+..+...++.+++.-+. +.-.+.+.|+..|.
T Consensus 219 ~~~~~~~~~~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~-------------------------g~~~d~e~a~~~l~ 273 (552)
T KOG1550|consen 219 GNERNESGELSEAFKYYREAAKLGHSEAQYALGICYLAGTY-------------------------GVTQDLESAIEYLK 273 (552)
T ss_pred CcccccchhhhHHHHHHHHHHhhcchHHHHHHHHHHhhccc-------------------------cccccHHHHHHHHH
Confidence 33333445678999999999999999888877776654311 01112255555555
Q ss_pred Hhhhc-----CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHhCC
Q 002716 470 KATAL-----DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALE-DYQAALCDVQAILTLSP 543 (889)
Q Consensus 470 ~al~~-----dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g-~~~~A~~~~~~al~~~p 543 (889)
.+.+. .-..+.+.+.+|.+|...... .. +++.|+..|.++-...
T Consensus 274 ~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~-----------------------------~~~d~~~A~~~~~~aA~~g- 323 (552)
T KOG1550|consen 274 LAAESFKKAATKGLPPAQYGLGRLYLQGLGV-----------------------------EKIDYEKALKLYTKAAELG- 323 (552)
T ss_pred HHHHHHHHHHhhcCCccccHHHHHHhcCCCC-----------------------------ccccHHHHHHHHHHHHhcC-
Confidence 55431 000233444444444432100 11 4445555555544332
Q ss_pred CCcchhhhHHHHHHHHHHHHHhh---chhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHH----
Q 002716 544 DYRMFEGRVAASQLHMLVREHID---NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR---- 616 (889)
Q Consensus 544 ~~~~~~~~~~a~~~lg~~~~~~~---~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~---- 616 (889)
++ .+.+.+|.++..-. +...|.+|| ..+.. -++..+.+++|.+|..
T Consensus 324 -~~------~a~~~lg~~~~~g~~~~d~~~A~~yy------------------~~Aa~--~G~~~A~~~la~~y~~G~gv 376 (552)
T KOG1550|consen 324 -NP------DAQYLLGVLYETGTKERDYRRAFEYY------------------SLAAK--AGHILAIYRLALCYELGLGV 376 (552)
T ss_pred -Cc------hHHHHHHHHHHcCCccccHHHHHHHH------------------HHHHH--cCChHHHHHHHHHHHhCCCc
Confidence 22 34444444444332 334454444 33322 2344555555555543
Q ss_pred hCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhh
Q 002716 617 LNCPEAAMRSLQLARQHAASDHERLVYEGWILYDT-SHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVV 695 (889)
Q Consensus 617 ~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~-g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~ 695 (889)
.-+...|..++.++.+.+ .+.+.+.++..+..- +.++.+.-.+.......-+. +.. .+..+...+..........
T Consensus 377 ~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~-~q~-~a~~l~~~~~~~~~~~~~~ 452 (552)
T KOG1550|consen 377 ERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEV-AQS-NAAYLLDQSEEDLFSRGVI 452 (552)
T ss_pred CCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhH-Hhh-HHHHHHHhccccccccccc
Confidence 235666777777776665 344444444444322 55555555544443322111 000 1111111111111112223
Q ss_pred hhHHHHhcchhhhC--chhHHHHHHHHHHHHc----CChHHHHHHHHHHHccCcchHHHHHHHHHHHc---CCHHHHHHH
Q 002716 696 SLLEDALKCPSDRL--RKGQALNNLGSVYVDC----GQLDLAADCYSNALKIRHTRAHQGLARVHFLK---NNKTTAYEE 766 (889)
Q Consensus 696 ~~~~~Al~~~~~~~--~~~~~~~~Lg~~y~~~----g~~~~A~~~~~~al~~~p~~a~~~La~~~~~~---g~~~~A~~~ 766 (889)
...+.+...+.+.. ....+...||.+|..- .+++.|..+|.+|.... .....++|..+..- .....|..+
T Consensus 453 ~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~-~~~~~nlg~~~e~g~g~~~~~~a~~~ 531 (552)
T KOG1550|consen 453 STLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG-AQALFNLGYMHEHGEGIKVLHLAKRY 531 (552)
T ss_pred cchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh-hHHHhhhhhHHhcCcCcchhHHHHHH
Confidence 34444554454442 2255667777776644 34777777777777666 56666666655431 014445555
Q ss_pred HHHHHH
Q 002716 767 MTKLIK 772 (889)
Q Consensus 767 ~~~al~ 772 (889)
+.++.+
T Consensus 532 ~~~~~~ 537 (552)
T KOG1550|consen 532 YDQASE 537 (552)
T ss_pred HHHHHh
Confidence 554444
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.032 Score=64.07 Aligned_cols=114 Identities=18% Similarity=-0.017 Sum_probs=80.9
Q ss_pred CCHHHHHHHHHHHHHHhccCHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCC----hHHHHHHHHHHHhCCCHHHHHH
Q 002716 758 NNKTTAYEEMTKLIKKARNNASAYEKRSEY----CDRELTRADLEMVTQLDPLR----VYPYRYRAAVLMDSHKENEAIA 829 (889)
Q Consensus 758 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~----~~~~~~la~~~~~~g~~~eA~~ 829 (889)
...+.|.+.+....+..|+........+.+ |+.++|+..|++++.....- .-.++.+|++++-.++|++|..
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 355666666666666666666555555553 66666666666666432221 2357789999999999999999
Q ss_pred HHHHHHhcCCCHHHH--HHHHHHHHHcCCH-------HHHHHHHHHHHccC
Q 002716 830 ELSRAIAFKADLHLL--HLRAAFHEHTGDV-------LGALRDCRAALSVD 871 (889)
Q Consensus 830 ~l~kal~~~p~~~~l--~l~a~~~~~~g~~-------~~A~~~~~~al~l~ 871 (889)
.+.+..+.+.-...+ +..|.++...|+. ++|.+.++++-.+-
T Consensus 327 ~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 327 YFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 999999876665333 3888999999999 88888888776543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.58 Score=56.01 Aligned_cols=150 Identities=16% Similarity=0.108 Sum_probs=84.4
Q ss_pred hHHHHHHHHhhhcCC----CChhhHHHHHHHHH-hccCHHHHHHHHHHHHcCCC-------CHHHHHHHHHHHHhcccHH
Q 002716 462 DKRWEDLDKATALDP----TLSYPYMYRASSLM-TKQNVEAALAEINRILGFKL-------ALECLELRFCFFLALEDYQ 529 (889)
Q Consensus 462 ~~A~~~~~~al~~dp----~~~~a~~~la~~~~-~~g~~~~Al~~l~kal~~~p-------~~~~l~~~a~~~~~~g~~~ 529 (889)
..|+.+++.+++..+ ....+++.+|.+++ ...+++.|...++|++.+.. ...+.++++.++...+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 667777777774221 12345666777766 67777888888777765542 2334556677777777666
Q ss_pred HHHHHHHHHHHhCCCCcchhhhHHHHHHH-HHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcC--CCChHH
Q 002716 530 AALCDVQAILTLSPDYRMFEGRVAASQLH-MLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD--APKGVL 606 (889)
Q Consensus 530 ~A~~~~~~al~~~p~~~~~~~~~~a~~~l-g~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~--p~~~~~ 606 (889)
|...+++.++...+........ +..++ ...+...+++..|...+ +...... ++++.+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~-~frll~~~l~~~~~d~~~Al~~L------------------~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYY-AFRLLKIQLALQHKDYNAALENL------------------QSIAQLANQRGDPAV 177 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHH-HHHHHHHHHHHhcccHHHHHHHH------------------HHHHHHhhhcCCHHH
Confidence 7777777777665544333322 33333 22222335666664444 5444433 233322
Q ss_pred ----HHHHHHHHHHhCCHHHHHHHHHHHH
Q 002716 607 ----YFRQSLLLLRLNCPEAAMRSLQLAR 631 (889)
Q Consensus 607 ----~~~la~~~~~~g~~~~A~~~l~~al 631 (889)
....+.++...+.++.+++.++++.
T Consensus 178 ~v~~~l~~~~l~l~~~~~~d~~~~l~~~~ 206 (608)
T PF10345_consen 178 FVLASLSEALLHLRRGSPDDVLELLQRAI 206 (608)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHH
Confidence 2233555566666677777766663
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00042 Score=50.79 Aligned_cols=42 Identities=21% Similarity=0.136 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 002716 605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGW 646 (889)
Q Consensus 605 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~ 646 (889)
.++..+|..|...|++++|++.|+++++.+|+++.++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467778888888888888888888888888888888877764
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00044 Score=68.30 Aligned_cols=93 Identities=18% Similarity=0.190 Sum_probs=83.9
Q ss_pred cchhHHHHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhc
Q 002716 447 PLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLAL 525 (889)
Q Consensus 447 ~~g~~~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~ 525 (889)
..|.-++....| +.|+..|.+||.++|+.+..|.++|.++++.++|+.+.....++++++| ....++.+|......
T Consensus 15 E~gnk~f~~k~y---~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s 91 (284)
T KOG4642|consen 15 EQGNKCFIPKRY---DDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQS 91 (284)
T ss_pred hccccccchhhh---chHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhh
Confidence 345556666677 8899999999999999999999999999999999999999999999999 788899999999999
Q ss_pred ccHHHHHHHHHHHHHhC
Q 002716 526 EDYQAALCDVQAILTLS 542 (889)
Q Consensus 526 g~~~~A~~~~~~al~~~ 542 (889)
..|++|+..++++..+.
T Consensus 92 ~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 92 KGYDEAIKVLQRAYSLL 108 (284)
T ss_pred ccccHHHHHHHHHHHHH
Confidence 99999999999997654
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00031 Score=76.59 Aligned_cols=92 Identities=20% Similarity=0.282 Sum_probs=86.8
Q ss_pred HHHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHH
Q 002716 452 YQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQA 530 (889)
Q Consensus 452 ~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~ 530 (889)
...-..| +.|+..|.+||+++|+.+..+-.++..+.+.+++..|+..+.++++.+| ...+++.+|....+.+++.+
T Consensus 14 ~l~~~~f---d~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 14 ALKDKVF---DVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred hcccchH---HHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence 3344556 9999999999999999999999999999999999999999999999999 88999999999999999999
Q ss_pred HHHHHHHHHHhCCCCc
Q 002716 531 ALCDVQAILTLSPDYR 546 (889)
Q Consensus 531 A~~~~~~al~~~p~~~ 546 (889)
|...|++...+.|+.+
T Consensus 91 A~~~l~~~~~l~Pnd~ 106 (476)
T KOG0376|consen 91 ALLDLEKVKKLAPNDP 106 (476)
T ss_pred HHHHHHHhhhcCcCcH
Confidence 9999999999999999
|
|
| >PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00053 Score=59.92 Aligned_cols=88 Identities=17% Similarity=0.194 Sum_probs=67.1
Q ss_pred EEEEeCCeEEEehHHHHh-hcChhhhhhhcCC---CCCCCcCceEecCCCCCHHHHHHHHHhhcc-CCCCCCCHHHHHHH
Q 002716 184 VVFRIHEEKIECDRQKFA-ALSAPFSAMLNGS---FMESLCEDIDLSENNISPSGLRIISDFSVT-GSLNGVTPNLLLEI 258 (889)
Q Consensus 184 v~~~v~~~~~~~hr~vLa-a~s~~F~~mf~~~---~~e~~~~~i~l~~~~~~~~~~~~ll~~~Yt-~~~~~~~~~~~~~l 258 (889)
|+|-|||+.|..-+..|. ....+|..||.++ ........+-|. -+|..|+.+|+|+.+ +.+...+...+..+
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiD---Rdp~~F~~IL~ylr~~~~l~~~~~~~~~~l 77 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFID---RDPELFEYILNYLRTGGKLPIPDEICLEEL 77 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEES---S-HHHHHHHHHHHHHTSSB---TTS-HHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEec---cChhhhhHHHHHHhhcCccCCCCchhHHHH
Confidence 689999999999999998 4466999999975 444555777776 799999999999999 67772235678899
Q ss_pred HHHHHHHcHHHH-HHHH
Q 002716 259 LIFANKFCCERL-KDAC 274 (889)
Q Consensus 259 l~~A~~~~~~~l-~~~~ 274 (889)
+.-|+.|+++.| .+.|
T Consensus 78 ~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 78 LEEAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHHHT-HHHHBHHC
T ss_pred HHHHHHcCCCccccCCC
Confidence 999999988887 4443
|
They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C .... |
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0028 Score=62.88 Aligned_cols=119 Identities=20% Similarity=0.208 Sum_probs=90.4
Q ss_pred HHHHHhhhHHHhcccHHHHHHHHHHHHHcCcchhHhhHHHHHhhcCCcHHHHHHHhhhhhccCcchhHHHHHhhcCChhH
Q 002716 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDK 463 (889)
Q Consensus 384 ~a~~~lG~~~~~~g~~~eA~~~~~~al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 463 (889)
-++++-|+-++..|+|.+|...|+.|+.. +..++..-++- +.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~-------------------------l~~L~lkEkP~-------------e~ 220 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIIC-------------------------LRNLQLKEKPG-------------EP 220 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHH-------------------------HHHHHhccCCC-------------Ch
Confidence 46889999999999999999999988641 11111111110 00
Q ss_pred HHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q 002716 464 RWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLS 542 (889)
Q Consensus 464 A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~ 542 (889)
+.++++......+.+.+.+++..|+|-++++..+.++...| +..+++.+|......-+.++|..++.++|+++
T Consensus 221 ------eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 221 ------EWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred ------HHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 11223333445677888999999999999999999999999 99999999999999999999999999999999
Q ss_pred CCCc
Q 002716 543 PDYR 546 (889)
Q Consensus 543 p~~~ 546 (889)
|.-.
T Consensus 295 psla 298 (329)
T KOG0545|consen 295 PSLA 298 (329)
T ss_pred hhhH
Confidence 8766
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.026 Score=62.67 Aligned_cols=97 Identities=21% Similarity=0.145 Sum_probs=82.9
Q ss_pred CCHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHcCCHHHHHHHHH
Q 002716 788 CDRELTRADLEMVTQLDPLRVY-PYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLL-HLRAAFHEHTGDVLGALRDCR 865 (889)
Q Consensus 788 ~~~~~A~~~l~~al~l~p~~~~-~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~l-~l~a~~~~~~g~~~~A~~~~~ 865 (889)
|+...|.+++..|+...|.... ...++|+++.+-|....|-..+.+++.+.-..+.. +..|..+..+.+.++|++.++
T Consensus 621 gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~ 700 (886)
T KOG4507|consen 621 GNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFR 700 (886)
T ss_pred CCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHH
Confidence 8999999999999999986543 57789999999999999999999999887543333 367888888899999999999
Q ss_pred HHHccCCCCHHHHHHHHhh
Q 002716 866 AALSVDPNDQEMLELHSRV 884 (889)
Q Consensus 866 ~al~l~P~~~~~l~l~~~~ 884 (889)
+|++++|+++++-+-+.++
T Consensus 701 ~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 701 QALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHhcCCCChhhHHHHHHH
Confidence 9999999999887766554
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0097 Score=61.74 Aligned_cols=161 Identities=12% Similarity=-0.015 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHH
Q 002716 513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 592 (889)
Q Consensus 513 ~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~ 592 (889)
+-....+.+.+..|++.+|-....++|+..|.+. -++..--.++...|+...-...+
T Consensus 104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d~PtDl------la~kfsh~a~fy~G~~~~~k~ai----------------- 160 (491)
T KOG2610|consen 104 EKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDL------LAVKFSHDAHFYNGNQIGKKNAI----------------- 160 (491)
T ss_pred HhhhhhHHHhhccccccHHHHHHHHHHHhCchhh------hhhhhhhhHHHhccchhhhhhHH-----------------
Confidence 3344456677788889898888999999889887 55555556777777766554444
Q ss_pred HHHHHhc-CCCC---hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 002716 593 IYQMLES-DAPK---GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (889)
Q Consensus 593 ~~~al~~-~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 668 (889)
++.+-. +|+- ..+.-.++..+.+.|-|++|.+..++++++++.+..+....+.++...|++.++.+...+.-..=
T Consensus 161 -~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~W 239 (491)
T KOG2610|consen 161 -EKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDW 239 (491)
T ss_pred -HHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccch
Confidence 666554 4444 34455677778888999999999999999999999999999999999999999888776643211
Q ss_pred CC-h----HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhh
Q 002716 669 RS-F----EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR 708 (889)
Q Consensus 669 p~-~----~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~ 708 (889)
.. . -.|...+..+...+ .++.|+++|...
T Consensus 240 r~s~mlasHNyWH~Al~~iE~a-----------eye~aleIyD~e 273 (491)
T KOG2610|consen 240 RQSWMLASHNYWHTALFHIEGA-----------EYEKALEIYDRE 273 (491)
T ss_pred hhhhHHHhhhhHHHHHhhhccc-----------chhHHHHHHHHH
Confidence 11 1 12333445555555 777777777664
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.016 Score=63.11 Aligned_cols=188 Identities=14% Similarity=0.073 Sum_probs=127.4
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCC-Ch-HHH
Q 002716 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQH----AASDHERLVYEGWILYD---TSHCEEGLRKAEESIQMKR-SF-EAF 674 (889)
Q Consensus 604 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~----~p~~~~~~~~lg~~~~~---~g~~~eA~~~~~~al~~~p-~~-~a~ 674 (889)
+.+..++-..|....+|+.-++..+..-.. -++.+.+.+.+|.++.+ .|+.++|+..+..++.... .+ +.+
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 445556667788999999988888877665 45567788889999998 9999999999999665443 33 778
Q ss_pred HHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc-hHHHHHHHH
Q 002716 675 FLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-RAHQGLARV 753 (889)
Q Consensus 675 ~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~-~a~~~La~~ 753 (889)
-..|.+|.+.-... .+......++|+.+|.++.+.+|+ ..-.|++.+
T Consensus 221 gL~GRIyKD~~~~s--------------------------------~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtL 268 (374)
T PF13281_consen 221 GLLGRIYKDLFLES--------------------------------NFTDRESLDKAIEWYRKGFEIEPDYYSGINAATL 268 (374)
T ss_pred HHHHHHHHHHHHHc--------------------------------CccchHHHHHHHHHHHHHHcCCccccchHHHHHH
Confidence 88888876642000 011122389999999999999988 777788888
Q ss_pred HHHcCCHHHHHHHHHHHH-HHhccCHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHH
Q 002716 754 HFLKNNKTTAYEEMTKLI-KKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELS 832 (889)
Q Consensus 754 ~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~ 832 (889)
+...|...+....+.+.. ..+. + .-++...-.-.+.+.+-.++.+..-.|++++|+..++
T Consensus 269 L~~~g~~~~~~~el~~i~~~l~~-----------l--------lg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e 329 (374)
T PF13281_consen 269 LMLAGHDFETSEELRKIGVKLSS-----------L--------LGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAE 329 (374)
T ss_pred HHHcCCcccchHHHHHHHHHHHH-----------H--------HHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888887544444433332 1100 0 0001111112334555567777777889999999999
Q ss_pred HHHhcCCCHH
Q 002716 833 RAIAFKADLH 842 (889)
Q Consensus 833 kal~~~p~~~ 842 (889)
+++..+|..+
T Consensus 330 ~~~~l~~~~W 339 (374)
T PF13281_consen 330 KAFKLKPPAW 339 (374)
T ss_pred HHhhcCCcch
Confidence 9888887654
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00021 Score=48.98 Aligned_cols=33 Identities=27% Similarity=0.353 Sum_probs=30.7
Q ss_pred HHHhhhcCCCChhhHHHHHHHHHhccCHHHHHH
Q 002716 468 LDKATALDPTLSYPYMYRASSLMTKQNVEAALA 500 (889)
Q Consensus 468 ~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~ 500 (889)
|++||+++|+++.+|+.+|.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 689999999999999999999999999999863
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00039 Score=75.80 Aligned_cols=94 Identities=17% Similarity=0.146 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002716 789 DRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL-HLLHLRAAFHEHTGDVLGALRDCRAA 867 (889)
Q Consensus 789 ~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~-~~l~l~a~~~~~~g~~~~A~~~~~~a 867 (889)
+++.|+..|.+|++++|+.+..+-+++.++.+.+++..|+..+.+|++..|.. ..++.+|.+...++.+.+|+..|++.
T Consensus 19 ~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~ 98 (476)
T KOG0376|consen 19 VFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKV 98 (476)
T ss_pred hHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHh
Confidence 44555555555555555555555555555555555555555555555555554 22224445555555555555555555
Q ss_pred HccCCCCHHHHHHHH
Q 002716 868 LSVDPNDQEMLELHS 882 (889)
Q Consensus 868 l~l~P~~~~~l~l~~ 882 (889)
..+.|+++.+...+.
T Consensus 99 ~~l~Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 99 KKLAPNDPDATRKID 113 (476)
T ss_pred hhcCcCcHHHHHHHH
Confidence 555555555554443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.05 Score=54.39 Aligned_cols=146 Identities=14% Similarity=-0.016 Sum_probs=92.0
Q ss_pred HHHhccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhc
Q 002716 488 SLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDN 567 (889)
Q Consensus 488 ~~~~~g~~~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~ 567 (889)
.|.+.|..+-|-..++++ --....-+.++|+.+|++++.+-.+..........+.-.+.++.+.+.
T Consensus 100 lY~E~GspdtAAmaleKA--------------ak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 100 LYVECGSPDTAAMALEKA--------------AKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred HHHHhCCcchHHHHHHHH--------------HHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence 355555555555555543 223456788889999998887755444333323344556778888899
Q ss_pred hhHHHHHHHhhhhcccccccchHHHHHHHHhc--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC----CCcHHHH
Q 002716 568 WTIADCWLQLYDRWSSVDDIGSLSVIYQMLES--DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA----ASDHERL 641 (889)
Q Consensus 568 ~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~----p~~~~~~ 641 (889)
+++|-..+ +....-.++. .|.-...+...-.+|+...+|..|.++++...+.. |++..+.
T Consensus 166 f~Eaa~a~--------------lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 166 FTEAATAF--------------LKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred hhHHHHHH--------------HHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 99986666 3333333333 34444556666677788889999999999866542 4445555
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 002716 642 VYEGWILYDTSHCEEGLRKAE 662 (889)
Q Consensus 642 ~~lg~~~~~~g~~~eA~~~~~ 662 (889)
-+|-. .+..|+.++......
T Consensus 232 enLL~-ayd~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 232 ENLLT-AYDEGDIEEIKKVLS 251 (308)
T ss_pred HHHHH-HhccCCHHHHHHHHc
Confidence 55533 456788887766654
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.027 Score=61.29 Aligned_cols=173 Identities=14% Similarity=0.085 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhc----CCCChHHHHHHHHHHHH---hCCHHHHHHH
Q 002716 554 ASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES----DAPKGVLYFRQSLLLLR---LNCPEAAMRS 626 (889)
Q Consensus 554 a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~ 626 (889)
....+-..|...++|+.-+++. +.+-.. -+..+.+.+.+|.++.+ .|+.++|+..
T Consensus 143 iv~~lllSyRdiqdydamI~Lv------------------e~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~i 204 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLV------------------ETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQI 204 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHH------------------HHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHH
Confidence 4445556788899998876666 333333 35567788899999999 9999999999
Q ss_pred HHH-HHHcCCCcHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhh
Q 002716 627 LQL-ARQHAASDHERLVYEGWILYD---------TSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVS 696 (889)
Q Consensus 627 l~~-al~~~p~~~~~~~~lg~~~~~---------~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~ 696 (889)
+.. .....+.+++.+...|.+|-+ ....++|+..|.++..++|+.-.-.+++.++.-.|.....+....+
T Consensus 205 l~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~ 284 (374)
T PF13281_consen 205 LLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRK 284 (374)
T ss_pred HHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHH
Confidence 998 455567789999999999854 2347899999999999998874445566666666643322222111
Q ss_pred hHHHHhcch-hhh----CchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc
Q 002716 697 LLEDALKCP-SDR----LRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT 744 (889)
Q Consensus 697 ~~~~Al~~~-~~~----~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~ 744 (889)
.--..-... ++. ...-+.+..++.+..-.|++++|+++++++++..|.
T Consensus 285 i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 285 IGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 100000000 011 111334444555555566666666666666666544
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0004 Score=47.56 Aligned_cols=33 Identities=24% Similarity=0.336 Sum_probs=30.9
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHH
Q 002716 797 LEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIA 829 (889)
Q Consensus 797 l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~ 829 (889)
|+++++++|+++.+|+++|.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 789999999999999999999999999999963
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.022 Score=58.88 Aligned_cols=159 Identities=16% Similarity=0.037 Sum_probs=111.0
Q ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHH
Q 002716 481 PYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHM 559 (889)
Q Consensus 481 a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg 559 (889)
.-+..+.-....|++.+|...|..++...| +.++...++.+|...|+.+.|...+.. .|...... .+ .+
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~----lP~~~~~~----~~--~~ 205 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA----LPLQAQDK----AA--HG 205 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh----Ccccchhh----HH--HH
Confidence 345567778899999999999999999999 889999999999999999998776654 34443110 11 11
Q ss_pred HHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC--Cc
Q 002716 560 LVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA--SD 637 (889)
Q Consensus 560 ~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p--~~ 637 (889)
+..+..-...| .+.+....+++.+..+|++..+.+.+|..+...|+.++|...+-..++.+- .+
T Consensus 206 -l~a~i~ll~qa-------------a~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d 271 (304)
T COG3118 206 -LQAQIELLEQA-------------AATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFED 271 (304)
T ss_pred -HHHHHHHHHHH-------------hcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccC
Confidence 01111111111 122335566888999999999999999999999999999999888887654 34
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002716 638 HERLVYEGWILYDTSHCEEGLRKAEE 663 (889)
Q Consensus 638 ~~~~~~lg~~~~~~g~~~eA~~~~~~ 663 (889)
..+...+-.++.-.|.-+.+...|++
T Consensus 272 ~~~Rk~lle~f~~~g~~Dp~~~~~RR 297 (304)
T COG3118 272 GEARKTLLELFEAFGPADPLVLAYRR 297 (304)
T ss_pred cHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 55566666666666654444444443
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00091 Score=66.16 Aligned_cols=86 Identities=14% Similarity=0.084 Sum_probs=79.9
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHH
Q 002716 484 YRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVR 562 (889)
Q Consensus 484 ~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~ 562 (889)
..|..++...+|+.|+..|.+++.++| .+..+..++.++++..+++.+....+++++++|+.. .+.+.+|...
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~v------k~h~flg~~~ 88 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLV------KAHYFLGQWL 88 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHH------HHHHHHHHHH
Confidence 457778888899999999999999999 678888999999999999999999999999999999 8999999999
Q ss_pred HHhhchhHHHHHH
Q 002716 563 EHIDNWTIADCWL 575 (889)
Q Consensus 563 ~~~~~~~~A~~~~ 575 (889)
.....+++|+..+
T Consensus 89 l~s~~~~eaI~~L 101 (284)
T KOG4642|consen 89 LQSKGYDEAIKVL 101 (284)
T ss_pred HhhccccHHHHHH
Confidence 9999999997766
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.017 Score=63.73 Aligned_cols=188 Identities=15% Similarity=0.121 Sum_probs=113.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHH
Q 002716 646 WILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVD 724 (889)
Q Consensus 646 ~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~ 724 (889)
.-..+..+.+.-++..++|++++|+. .++..++.-... ...++.+.++++++-++...........
T Consensus 176 q~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~-------------Ti~Eae~l~rqAvkAgE~~lg~s~~~~~ 242 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALEINPDCADAYILLAEEEAS-------------TIVEAEELLRQAVKAGEASLGKSQFLQH 242 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccccc-------------CHHHHHHHHHHHHHHHHHhhchhhhhhc
Confidence 34446778888999999999999999 888777753222 3455555555554433222222111122
Q ss_pred cCChHHHHHHHHHHHccCcc-hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002716 725 CGQLDLAADCYSNALKIRHT-RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQL 803 (889)
Q Consensus 725 ~g~~~~A~~~~~~al~~~p~-~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~~al~l 803 (889)
.|..-++. ..-..++- .+...||.+..+.|+.++|++.+..+++..|..
T Consensus 243 ~g~~~e~~----~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~-------------------------- 292 (539)
T PF04184_consen 243 HGHFWEAW----HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL-------------------------- 292 (539)
T ss_pred ccchhhhh----hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc--------------------------
Confidence 22211111 00111222 667789999999999988888888887776621
Q ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCCHHHHH-HHHHHHHH-cCC---------------HHHHHHHHH
Q 002716 804 DPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAF-KADLHLLH-LRAAFHEH-TGD---------------VLGALRDCR 865 (889)
Q Consensus 804 ~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~-~p~~~~l~-l~a~~~~~-~g~---------------~~~A~~~~~ 865 (889)
++..++.++..++...+.|.++...+.+-=++ -|....+. ..+.+..+ .+| -..|.+.+.
T Consensus 293 --~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~ 370 (539)
T PF04184_consen 293 --DNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIH 370 (539)
T ss_pred --chhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHH
Confidence 23446677888888888888888888775333 23433322 22221111 122 234778899
Q ss_pred HHHccCCCCHHHH
Q 002716 866 AALSVDPNDQEML 878 (889)
Q Consensus 866 ~al~l~P~~~~~l 878 (889)
+|++.+|.-+..+
T Consensus 371 RAvefNPHVp~YL 383 (539)
T PF04184_consen 371 RAVEFNPHVPKYL 383 (539)
T ss_pred HHHHhCCCCchhh
Confidence 9999999887765
|
The molecular function of this protein is uncertain. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.08 E-value=1.1 Score=53.26 Aligned_cols=119 Identities=18% Similarity=0.022 Sum_probs=87.0
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHcCCC----------CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhh
Q 002716 482 YMYRASSLMTKQNVEAALAEINRILGFKL----------ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGR 551 (889)
Q Consensus 482 ~~~la~~~~~~g~~~~Al~~l~kal~~~p----------~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 551 (889)
-...|-......++.+|-..+.++...-+ -.....++|.+....|++++|++..+.++..-|.+.....
T Consensus 418 vll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r- 496 (894)
T COG2909 418 VLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSR- 496 (894)
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhh-
Confidence 34456666778888888888887765443 2356667889999999999999999999999888874444
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhc----C--CCChHHHHHHHHHHHHhCC
Q 002716 552 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES----D--APKGVLYFRQSLLLLRLNC 619 (889)
Q Consensus 552 ~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~----~--p~~~~~~~~la~~~~~~g~ 619 (889)
+.+...+|.+..-.|++++|..++ .++.+. + +-...+....+.++..+|+
T Consensus 497 ~~~~sv~~~a~~~~G~~~~Al~~~------------------~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq 552 (894)
T COG2909 497 IVALSVLGEAAHIRGELTQALALM------------------QQAEQMARQHDVYHLALWSLLQQSEILEAQGQ 552 (894)
T ss_pred hhhhhhhhHHHHHhchHHHHHHHH------------------HHHHHHHHHcccHHHHHHHHHHHHHHHHHhhH
Confidence 457888899999999999997777 333333 1 2223344566778888883
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.014 Score=62.18 Aligned_cols=140 Identities=16% Similarity=0.121 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHccCcc--hHHHHHHHHHHH-cCCHHHHHHHHHHHHHHhccCHHHHHHHHhcCCH
Q 002716 714 ALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFL-KNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDR 790 (889)
Q Consensus 714 ~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 790 (889)
+|..+.....+.+..+.|...|.+|.+..+. ..|...|.+.+. .++.+.|.+.|+.+++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~----------------- 65 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK----------------- 65 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-----------------
Confidence 5666777777777788999999999865543 777777777555 45554455555555554
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHH----HHHHHHHHHHHcCCHHHHHHHHHH
Q 002716 791 ELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLH----LLHLRAAFHEHTGDVLGALRDCRA 866 (889)
Q Consensus 791 ~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~----~l~l~a~~~~~~g~~~~A~~~~~~ 866 (889)
-|.+...|......+...|+.+.|...|++++..-|... ++.....+-...|+.+...+..++
T Consensus 66 -------------f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R 132 (280)
T PF05843_consen 66 -------------FPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKR 132 (280)
T ss_dssp -------------HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHH
T ss_pred -------------CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455556666666777788888999999999988777654 444555566666999999999999
Q ss_pred HHccCCCCHHHHHHHHh
Q 002716 867 ALSVDPNDQEMLELHSR 883 (889)
Q Consensus 867 al~l~P~~~~~l~l~~~ 883 (889)
+.+..|++..+.....+
T Consensus 133 ~~~~~~~~~~~~~f~~r 149 (280)
T PF05843_consen 133 AEELFPEDNSLELFSDR 149 (280)
T ss_dssp HHHHTTTS-HHHHHHCC
T ss_pred HHHHhhhhhHHHHHHHH
Confidence 99998887766665544
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.017 Score=60.24 Aligned_cols=90 Identities=20% Similarity=0.158 Sum_probs=80.4
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHcCC---C--CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHH
Q 002716 480 YPYMYRASSLMTKQNVEAALAEINRILGFK---L--ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAA 554 (889)
Q Consensus 480 ~a~~~la~~~~~~g~~~~Al~~l~kal~~~---p--~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a 554 (889)
.-|..-|.-|+..++|..|+..|.+.|..+ | +..+|.+++.+.+..|+|..|+.++.+++..+|.+. .+
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~------Ka 155 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHL------KA 155 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchh------hh
Confidence 446667899999999999999999998764 3 677888999999999999999999999999999999 88
Q ss_pred HHHHHHHHHHhhchhHHHHHH
Q 002716 555 SQLHMLVREHIDNWTIADCWL 575 (889)
Q Consensus 555 ~~~lg~~~~~~~~~~~A~~~~ 575 (889)
++.-+.+...++.+.+|..|.
T Consensus 156 ~~R~Akc~~eLe~~~~a~nw~ 176 (390)
T KOG0551|consen 156 YIRGAKCLLELERFAEAVNWC 176 (390)
T ss_pred hhhhhHHHHHHHHHHHHHHHH
Confidence 888899999999999998888
|
|
| >KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0009 Score=66.63 Aligned_cols=66 Identities=15% Similarity=0.134 Sum_probs=52.6
Q ss_pred cccEEEEeCCeEEEehHHHHhhcChhhhhhhcCCCCCCCc--CceEecCCCCCHHHHHHHHHhhccCCCC
Q 002716 181 LRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLC--EDIDLSENNISPSGLRIISDFSVTGSLN 248 (889)
Q Consensus 181 ~~Dv~~~v~~~~~~~hr~vLaa~s~~F~~mf~~~~~e~~~--~~i~l~~~~~~~~~~~~ll~~~Yt~~~~ 248 (889)
..||-++.....||+||++||+|||+|+.+.+++-.-... ..|..- |+.-++|.++|+++|||+..
T Consensus 130 c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~a--g~dm~~feafLh~l~tgEfg 197 (401)
T KOG2838|consen 130 CGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFA--GFDMDAFEAFLHSLITGEFG 197 (401)
T ss_pred eccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhh--ccChHHHHHHHHHHHhcccc
Confidence 4588888888999999999999999999988764311111 344444 69999999999999999876
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0016 Score=44.65 Aligned_cols=33 Identities=15% Similarity=0.206 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh
Q 002716 639 ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (889)
Q Consensus 639 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 671 (889)
.+++.+|.++..+|++++|+..|+++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 456666666666666666666666666666653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0015 Score=47.84 Aligned_cols=42 Identities=17% Similarity=-0.004 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHH
Q 002716 513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHML 560 (889)
Q Consensus 513 ~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~ 560 (889)
+.+..+|..|...|++++|+..|+++++.+|+++ .++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~------~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDP------EAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH------HHHHHhhh
Confidence 4566777788888888888888888888888877 66655553
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.069 Score=55.30 Aligned_cols=142 Identities=15% Similarity=0.018 Sum_probs=102.1
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHH
Q 002716 515 LELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 594 (889)
Q Consensus 515 l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~ 594 (889)
-...+.-....|++.+|...+..++...|++. .+...++.++...|+.+.| +
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~------~~~~~la~~~l~~g~~e~A----------------------~ 188 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAAPENS------EAKLLLAECLLAAGDVEAA----------------------Q 188 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhCcccc------hHHHHHHHHHHHcCChHHH----------------------H
Confidence 34446667889999999999999999999998 8889999999999999999 4
Q ss_pred HHHhcCCCChHHHHHHH-----HHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 002716 595 QMLESDAPKGVLYFRQS-----LLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 669 (889)
Q Consensus 595 ~al~~~p~~~~~~~~la-----~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p 669 (889)
..+...|.+...-...+ ..+.+.....+ ...+++.+..+|++.++.+.+|..+...|+.++|++.+-..++.+.
T Consensus 189 ~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 189 AILAALPLQAQDKAAHGLQAQIELLEQAAATPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR 267 (304)
T ss_pred HHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 44455554332211111 22222222221 1235667788999999999999999999999999999998888776
Q ss_pred Ch---HHHHHHHHHHHHcC
Q 002716 670 SF---EAFFLKAYALADSS 685 (889)
Q Consensus 670 ~~---~a~~~la~~~~~~~ 685 (889)
.+ .+...+-.++.-.|
T Consensus 268 ~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 268 GFEDGEARKTLLELFEAFG 286 (304)
T ss_pred cccCcHHHHHHHHHHHhcC
Confidence 55 44444444444444
|
|
| >KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.00046 Score=74.65 Aligned_cols=120 Identities=21% Similarity=0.146 Sum_probs=100.5
Q ss_pred CeEEEehHHHHhhcChhhhhhhcCCCCCCCcCceEecCCCCCHHHHHHHHHhhccCCCCCCCHHHHH---HHHHHHHHHc
Q 002716 190 EEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLL---EILIFANKFC 266 (889)
Q Consensus 190 ~~~~~~hr~vLaa~s~~F~~mf~~~~~e~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~---~ll~~A~~~~ 266 (889)
+..+.+|+.+++++|++|+.|+.....+.....+++.+ .++..++++..|.|+..-. ...+.+. .+++++.++-
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d--~~~~~~~~~~~F~~~~s~~-~~~~~~~~~~~~~a~~f~~~ 185 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLE--EKPEVLEALNGFQVLPSQV-SSVERIFEKHPDLAAAFKYK 185 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhccccccccc--cchhhHhhhceEEEeccch-HHHHHhhcCChhhhhccccc
Confidence 55699999999999999999999887777777778885 9999999999999996554 3444443 8888999999
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCChhhHHHHHHHHhh
Q 002716 267 CERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLR 313 (889)
Q Consensus 267 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~~l~~~c~~~~~~ 313 (889)
.+.|+..|...+.+.+ ...++..++..+..+....+...|..++..
T Consensus 186 ~~~lk~~~~~~l~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 231 (297)
T KOG1987|consen 186 NRHLKLACMPVLLSLI-ETLNVSQSLQEASNYDLKEAKSALTYVIAA 231 (297)
T ss_pred cHHHHHHHHHHHHHHH-HhhhhcccHHHhchhHHHHHHHHHHHHHhc
Confidence 9999999999999988 456666777777888888899999988876
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.47 Score=61.71 Aligned_cols=104 Identities=13% Similarity=0.066 Sum_probs=83.0
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHccCcchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccC--------------
Q 002716 712 GQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNN-------------- 777 (889)
Q Consensus 712 ~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~-------------- 777 (889)
+..|.+.+.+....|+++.|..+.-+|.+..+..++...|.....+|+...|+..+++.++.+-.+
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~ 1749 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNL 1749 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhh
Confidence 688999999999999999999999999999888999999999999999999999999999766422
Q ss_pred ---HHHHHHHHhc----C--CHHHHHHHHHHHHhcCCCChHHHHHHH
Q 002716 778 ---ASAYEKRSEY----C--DRELTRADLEMVTQLDPLRVYPYRYRA 815 (889)
Q Consensus 778 ---~~~~~~~~~~----~--~~~~A~~~l~~al~l~p~~~~~~~~la 815 (889)
+.+....+.| + ....-+..|.++.+..|.....++++|
T Consensus 1750 ~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1750 LIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred hhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 1112222222 2 345567788889999887777777777
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.91 E-value=1.2 Score=50.80 Aligned_cols=177 Identities=10% Similarity=-0.117 Sum_probs=128.2
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc-cCHHHHHHHHh--
Q 002716 712 GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKAR-NNASAYEKRSE-- 786 (889)
Q Consensus 712 ~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~-- 786 (889)
...|......-...|+++...-.|++++---.. ..|...++.....|+.+-|...+..+.+... ..+......+.
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 345666666677889999999999998754322 7888888888888999999888888877664 33333332222
Q ss_pred -c-CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHH---HHHHHHHhcCCCH---HHHH--HHHHHHHHcCC
Q 002716 787 -Y-CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAI---AELSRAIAFKADL---HLLH--LRAAFHEHTGD 856 (889)
Q Consensus 787 -~-~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~---~~l~kal~~~p~~---~~l~--l~a~~~~~~g~ 856 (889)
+ |+++.|...|+...+--|....+-...+......|+.+.+. ..+........+. ..+. ..-..+.-.++
T Consensus 377 e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d 456 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIRED 456 (577)
T ss_pred HhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcC
Confidence 2 79999999999999877998888777777888889998888 4444444333332 2222 22223444599
Q ss_pred HHHHHHHHHHHHccCCCCHHHHHHHHhhhcCC
Q 002716 857 VLGALRDCRAALSVDPNDQEMLELHSRVYSHE 888 (889)
Q Consensus 857 ~~~A~~~~~~al~l~P~~~~~l~l~~~~~~~~ 888 (889)
.+.|...+.++++..|.+.....-+.++...+
T Consensus 457 ~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~ 488 (577)
T KOG1258|consen 457 ADLARIILLEANDILPDCKVLYLELIRFELIQ 488 (577)
T ss_pred HHHHHHHHHHhhhcCCccHHHHHHHHHHHHhC
Confidence 99999999999999999998887777655443
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0048 Score=61.25 Aligned_cols=111 Identities=14% Similarity=0.101 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh--------CCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccc
Q 002716 513 ECLELRFCFFLALEDYQAALCDVQAILTL--------SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSV 584 (889)
Q Consensus 513 ~~l~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~ 584 (889)
.++...|+-++..|+|.+|...|+.++.. .|..+ +|.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~--------------------------eW~--------- 223 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEP--------------------------EWL--------- 223 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCCh--------------------------HHH---------
Confidence 45666777788888888888888777642 22222 122
Q ss_pred cccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002716 585 DDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEES 664 (889)
Q Consensus 585 dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~a 664 (889)
+++.....++.+.+.+++..|+|-++++.-...+...|.+..+++..|.+....-+.++|...|.++
T Consensus 224 -------------eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~v 290 (329)
T KOG0545|consen 224 -------------ELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKV 290 (329)
T ss_pred -------------HHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 2233344567788889999999999999999999999999999999999988888899999999999
Q ss_pred HhcCCCh
Q 002716 665 IQMKRSF 671 (889)
Q Consensus 665 l~~~p~~ 671 (889)
+.++|..
T Consensus 291 L~ldpsl 297 (329)
T KOG0545|consen 291 LELDPSL 297 (329)
T ss_pred HhcChhh
Confidence 9888876
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.25 Score=54.63 Aligned_cols=157 Identities=15% Similarity=0.160 Sum_probs=103.4
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHccC------cchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc-CH----HH
Q 002716 712 GQALNNLGSVYVDCGQLDLAADCYSNALKIR------HTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARN-NA----SA 780 (889)
Q Consensus 712 ~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~------p~~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~-~~----~~ 780 (889)
...+...+.+....|+++.|...+.++.... ........+.+....|+..+|+..++..+..... .. ..
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~ 225 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNA 225 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHH
Confidence 5788999999999999999999999999876 3367777899999999999999999999883321 10 00
Q ss_pred HHHHHhcC----CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhC------CCHHHHHHHHHHHHhcCCCH-HHHHHHHH
Q 002716 781 YEKRSEYC----DRELTRADLEMVTQLDPLRVYPYRYRAAVLMDS------HKENEAIAELSRAIAFKADL-HLLHLRAA 849 (889)
Q Consensus 781 ~~~~~~~~----~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~------g~~~eA~~~l~kal~~~p~~-~~l~l~a~ 849 (889)
....+.+. ......... .....+.++..+|...... +..++++..|.+++...|+. ..++..+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 226 ELKSGLLESLEVISSTNLDKE-----SKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred HHhhccccccccccccchhhh-----hHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 00000000 000000000 0011134566677766666 88999999999999999986 33333333
Q ss_pred HHHHc-----------------CCHHHHHHHHHHHHccCCC
Q 002716 850 FHEHT-----------------GDVLGALRDCRAALSVDPN 873 (889)
Q Consensus 850 ~~~~~-----------------g~~~~A~~~~~~al~l~P~ 873 (889)
++... .-...|+..|-+++...|+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 301 FNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 33222 1124589999999999888
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.24 Score=58.37 Aligned_cols=247 Identities=15% Similarity=0.023 Sum_probs=144.8
Q ss_pred HHHHHHhhhHHH-----hcccHHHHHHHHHHHHH-------cCcchhHhhHHHHHhhcCCcHHHHHHHhhhhhccCcchh
Q 002716 383 LLAFHQLGCVRL-----LRKEYDEAEHLFEAAVN-------AGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGW 450 (889)
Q Consensus 383 ~~a~~~lG~~~~-----~~g~~~eA~~~~~~al~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~ 450 (889)
..+.+.+|.+|+ ..++.+.|+.+|+.|.+ .++..+..+++++|........
T Consensus 244 ~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~----------------- 306 (552)
T KOG1550|consen 244 SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEK----------------- 306 (552)
T ss_pred hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCcc-----------------
Confidence 346677888877 34789999999999987 4555566667766655432110
Q ss_pred HHHHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhcc---CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh---
Q 002716 451 MYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQ---NVEAALAEINRILGFKLALECLELRFCFFLA--- 524 (889)
Q Consensus 451 ~~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g---~~~~Al~~l~kal~~~p~~~~l~~~a~~~~~--- 524 (889)
..+ ..|+..|.++.+.. ++.+.+.+|.++.... ++..|..+|..+.... ...+.+.++.+|..
T Consensus 307 -----~d~---~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G-~~~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 307 -----IDY---EKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG-HILAIYRLALCYELGLG 375 (552)
T ss_pred -----ccH---HHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhCCC
Confidence 022 77888888888764 4557788888887655 6789999999986543 45556666666653
Q ss_pred -cccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHh-hchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCC
Q 002716 525 -LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHI-DNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP 602 (889)
Q Consensus 525 -~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~-~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~ 602 (889)
.-+...|..++.++-+.. ++ .+...++..+... +.++.+.-.+ .+.+ ....+..-.
T Consensus 376 v~r~~~~A~~~~k~aA~~g--~~------~A~~~~~~~~~~g~~~~~~~~~~~-~~~a-------------~~g~~~~q~ 433 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKG--NP------SAAYLLGAFYEYGVGRYDTALALY-LYLA-------------ELGYEVAQS 433 (552)
T ss_pred cCCCHHHHHHHHHHHHHcc--Ch------hhHHHHHHHHHHccccccHHHHHH-HHHH-------------HhhhhHHhh
Confidence 348899999999998876 33 3444444444332 5666553333 0001 000000001
Q ss_pred ChHHHHHHHHHHHHh----CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCChHHH
Q 002716 603 KGVLYFRQSLLLLRL----NCPEAAMRSLQLARQHAASDHERLVYEGWILYDT----SHCEEGLRKAEESIQMKRSFEAF 674 (889)
Q Consensus 603 ~~~~~~~la~~~~~~----g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~----g~~~eA~~~~~~al~~~p~~~a~ 674 (889)
+.............. .+...+...+.++.. +.+..+...+|.+|+.- .+++.|...|.++-... -.+.
T Consensus 434 ~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~--~~~~ 509 (552)
T KOG1550|consen 434 NAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG--AQAL 509 (552)
T ss_pred HHHHHHHhccccccccccccchhHHHHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh--hHHH
Confidence 111111111111111 134444444544433 34566777777777653 35778888887776555 5566
Q ss_pred HHHHHHHHH
Q 002716 675 FLKAYALAD 683 (889)
Q Consensus 675 ~~la~~~~~ 683 (889)
+++|+.+..
T Consensus 510 ~nlg~~~e~ 518 (552)
T KOG1550|consen 510 FNLGYMHEH 518 (552)
T ss_pred hhhhhHHhc
Confidence 666666544
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.86 E-value=1.7 Score=52.00 Aligned_cols=222 Identities=13% Similarity=-0.028 Sum_probs=125.0
Q ss_pred hHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q 002716 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTL 541 (889)
Q Consensus 462 ~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~ 541 (889)
.+|++.|-+| +++..|...-....+.|+|++-+.++.-+-+....+..-..+-..|.+.++..+-... + .
T Consensus 1121 ~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~f----i-~ 1190 (1666)
T KOG0985|consen 1121 KDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEF----I-A 1190 (1666)
T ss_pred HHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHH----h-c
Confidence 5555555443 3445555555666666666666666655543322111111222233334443332221 1 2
Q ss_pred CCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHH
Q 002716 542 SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPE 621 (889)
Q Consensus 542 ~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 621 (889)
.|+.. -....|.-.+..+.|+.|.-.+ .+..-|..++..+..+|+|.
T Consensus 1191 gpN~A-------~i~~vGdrcf~~~~y~aAkl~y--------------------------~~vSN~a~La~TLV~LgeyQ 1237 (1666)
T KOG0985|consen 1191 GPNVA-------NIQQVGDRCFEEKMYEAAKLLY--------------------------SNVSNFAKLASTLVYLGEYQ 1237 (1666)
T ss_pred CCCch-------hHHHHhHHHhhhhhhHHHHHHH--------------------------HHhhhHHHHHHHHHHHHHHH
Confidence 34443 2333455555555555553333 23344667888888889998
Q ss_pred HHHHHHHHHHHcCC-------------------------CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHH
Q 002716 622 AAMRSLQLARQHAA-------------------------SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFF 675 (889)
Q Consensus 622 ~A~~~l~~al~~~p-------------------------~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~ 675 (889)
.|...-++|-.... -.++-+-.+...|...|.+++-+..++.++.+.+.+ ..+.
T Consensus 1238 ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfT 1317 (1666)
T KOG0985|consen 1238 GAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFT 1317 (1666)
T ss_pred HHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHH
Confidence 88888776532210 012334556777889999999999999999988888 7777
Q ss_pred HHHHHHHHcCCCCCcchhhhhhHHHHhcchhhh---------CchhHHHHHHHHHHHHcCChHHHHHHH
Q 002716 676 LKAYALADSSQDSSCSSTVVSLLEDALKCPSDR---------LRKGQALNNLGSVYVDCGQLDLAADCY 735 (889)
Q Consensus 676 ~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~---------~~~~~~~~~Lg~~y~~~g~~~~A~~~~ 735 (889)
.+|..|..-... ..-+-++.|-.. ...+..|..+..+|.+-..|+.|.-..
T Consensus 1318 ELaiLYskykp~---------km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~tm 1377 (1666)
T KOG0985|consen 1318 ELAILYSKYKPE---------KMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAALTM 1377 (1666)
T ss_pred HHHHHHHhcCHH---------HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 888887765311 111112222111 112567788888888888888776443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.44 Score=52.66 Aligned_cols=143 Identities=15% Similarity=0.064 Sum_probs=98.0
Q ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC----CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh----
Q 002716 600 DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA----SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF---- 671 (889)
Q Consensus 600 ~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p----~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---- 671 (889)
.......+...+.+..+.|+++.|...+.++....+ ..+.+.+..+.++...|+..+|+..++..+......
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 456677889999999999999999999999987652 246788889999999999999999999888621111
Q ss_pred --HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcc---hhhhCchhHHHHHHHHHHHHc------CChHHHHHHHHHHHc
Q 002716 672 --EAFFLKAYALADSSQDSSCSSTVVSLLEDALKC---PSDRLRKGQALNNLGSVYVDC------GQLDLAADCYSNALK 740 (889)
Q Consensus 672 --~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~---~~~~~~~~~~~~~Lg~~y~~~------g~~~~A~~~~~~al~ 740 (889)
......+... . .+..... .......+.++..+|...... ++.+++...|+++.+
T Consensus 222 ~~~~~~~~~~~~-~--------------~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~ 286 (352)
T PF02259_consen 222 ISNAELKSGLLE-S--------------LEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATK 286 (352)
T ss_pred ccHHHHhhcccc-c--------------cccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Confidence 0000000000 0 0000000 000011156778888877777 899999999999999
Q ss_pred cCcc--hHHHHHHHHHHHc
Q 002716 741 IRHT--RAHQGLARVHFLK 757 (889)
Q Consensus 741 ~~p~--~a~~~La~~~~~~ 757 (889)
..|. .++..+|..+...
T Consensus 287 ~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 287 LDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred hChhHHHHHHHHHHHHHHH
Confidence 9998 7777777765543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=96.82 E-value=1.8 Score=51.59 Aligned_cols=205 Identities=13% Similarity=0.021 Sum_probs=134.0
Q ss_pred chhHHHHHhhcCChhHHHHHHHHhhhcCCCC-------hhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC------CHHH
Q 002716 448 LGWMYQERSLYCEGDKRWEDLDKATALDPTL-------SYPYMYRASSLMTKQNVEAALAEINRILGFKL------ALEC 514 (889)
Q Consensus 448 ~g~~~~~~~~~~~~~~A~~~~~~al~~dp~~-------~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p------~~~~ 514 (889)
.+|.......+.+.+..+..+...+.. |.. ...---+|.+....|+.++|++..+.++..-| ...+
T Consensus 421 ~aW~~~s~~r~~ea~~li~~l~~~l~~-~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~ 499 (894)
T COG2909 421 QAWLLASQHRLAEAETLIARLEHFLKA-PMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVA 499 (894)
T ss_pred HHHHHHHccChHHHHHHHHHHHHHhCc-CcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhh
Confidence 467777777783333334444333332 111 12233467888999999999999999998766 3456
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHH--HHHHHhhhhcccccccchHHH
Q 002716 515 LELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIA--DCWLQLYDRWSSVDDIGSLSV 592 (889)
Q Consensus 515 l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A--~~~~~l~~~~~~~dd~~sl~~ 592 (889)
+...|.+..-.|++++|..+.+++.+....+...+..+-+....+.+...+|+..-| +.-+ ...
T Consensus 500 ~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~--------------~~~ 565 (894)
T COG2909 500 LSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAF--------------NLI 565 (894)
T ss_pred hhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH--------------HHH
Confidence 777889999999999999999999888666555555445556667778888843333 2233 222
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC----CC--cHH-HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002716 593 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA----AS--DHE-RLVYEGWILYDTSHCEEGLRKAEESI 665 (889)
Q Consensus 593 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~----p~--~~~-~~~~lg~~~~~~g~~~eA~~~~~~al 665 (889)
..+-+...|-+.......+.++...-+++.+.......+... |. ... +++.++.+++..|+.++|.....+..
T Consensus 566 ~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~ 645 (894)
T COG2909 566 REQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELE 645 (894)
T ss_pred HHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 344555566665555555555555555777776666655432 22 222 23478999999999999999888876
Q ss_pred hc
Q 002716 666 QM 667 (889)
Q Consensus 666 ~~ 667 (889)
.+
T Consensus 646 ~l 647 (894)
T COG2909 646 RL 647 (894)
T ss_pred HH
Confidence 43
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.038 Score=53.60 Aligned_cols=88 Identities=17% Similarity=0.088 Sum_probs=63.2
Q ss_pred CCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002716 788 CDRELTRADLEMVTQLDPLR---VYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDC 864 (889)
Q Consensus 788 ~~~~~A~~~l~~al~l~p~~---~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~l~l~a~~~~~~g~~~~A~~~~ 864 (889)
+++++|...++.++....+. .-+-..+|.+..+.|++++|+..+.....-.=..-...++|.++...|+.++|+..|
T Consensus 103 ~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay 182 (207)
T COG2976 103 NNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAY 182 (207)
T ss_pred ccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHH
Confidence 55566666666666432221 224567899999999999999998764322112233458999999999999999999
Q ss_pred HHHHccCCCCH
Q 002716 865 RAALSVDPNDQ 875 (889)
Q Consensus 865 ~~al~l~P~~~ 875 (889)
+++++.+++.+
T Consensus 183 ~kAl~~~~s~~ 193 (207)
T COG2976 183 EKALESDASPA 193 (207)
T ss_pred HHHHHccCChH
Confidence 99999985544
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.53 Score=50.23 Aligned_cols=235 Identities=15% Similarity=0.016 Sum_probs=132.6
Q ss_pred HhccCHHHHHHHHHHHHcCC-C-CH-------HHHHHHHHHHHhcc-cHHHHHHHHHHHHHh----CC---CCcch-hhh
Q 002716 490 MTKQNVEAALAEINRILGFK-L-AL-------ECLELRFCFFLALE-DYQAALCDVQAILTL----SP---DYRMF-EGR 551 (889)
Q Consensus 490 ~~~g~~~~Al~~l~kal~~~-p-~~-------~~l~~~a~~~~~~g-~~~~A~~~~~~al~~----~p---~~~~~-~~~ 551 (889)
.++|+++.|...+.|+-... . ++ ..++..|...+..+ +++.|...++++.++ .+ ..+.. ..+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46788888888888886544 1 22 34556677777788 999999999998877 21 22211 234
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 002716 552 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR 631 (889)
Q Consensus 552 ~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al 631 (889)
...+..++.++...+..+...+. ...++.+-...|+.+.++...-.+..+.++.+++.+.+.+++
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka---------------~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKA---------------LNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMI 148 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHH---------------HHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHH
Confidence 46778888888887776544332 223355555668888887655566666899999999999988
Q ss_pred HcCC-CcHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHH---HHcCCCCCcchhhhhhHHHHhcc
Q 002716 632 QHAA-SDHERLVYEGWI-LYDTSHCEEGLRKAEESIQM--KRSFEAFFLKAYAL---ADSSQDSSCSSTVVSLLEDALKC 704 (889)
Q Consensus 632 ~~~p-~~~~~~~~lg~~-~~~~g~~~eA~~~~~~al~~--~p~~~a~~~la~~~---~~~~~~~~~~~~~~~~~~~Al~~ 704 (889)
..-+ .+...-..+..+ .........|...+...+.. .|....+.....+. .............++.+++.+..
T Consensus 149 ~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~ 228 (278)
T PF08631_consen 149 RSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSI 228 (278)
T ss_pred HhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHH
Confidence 7654 211111111111 11223345677777666643 22221133222222 22211111111112233333332
Q ss_pred hhhh----Cch------hHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002716 705 PSDR----LRK------GQALNNLGSVYVDCGQLDLAADCYSNAL 739 (889)
Q Consensus 705 ~~~~----~~~------~~~~~~Lg~~y~~~g~~~~A~~~~~~al 739 (889)
.... +.. ...+-+.|...+..++|++|+.+|+-++
T Consensus 229 v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 229 VEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 2222 222 2344456777888888888888888665
|
It is also involved in sporulation []. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0025 Score=43.51 Aligned_cols=32 Identities=22% Similarity=0.397 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002716 639 ERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (889)
Q Consensus 639 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 670 (889)
++++.+|.+++..|++++|++.|+++++++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 45556666666666666666666666666654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0031 Score=43.16 Aligned_cols=33 Identities=18% Similarity=0.191 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCH
Q 002716 809 YPYRYRAAVLMDSHKENEAIAELSRAIAFKADL 841 (889)
Q Consensus 809 ~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~ 841 (889)
.+|..+|.++...|++++|+..|+++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 467777888888888888888888888877763
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.026 Score=54.69 Aligned_cols=65 Identities=23% Similarity=0.143 Sum_probs=49.8
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCc
Q 002716 482 YMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (889)
Q Consensus 482 ~~~la~~~~~~g~~~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 546 (889)
-..+|.+...+|++++|++.++...+..=....-.++|.++...|+-++|...|++++..++...
T Consensus 129 ~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 129 ALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 35678888888888888888877544332455567888999999999999999999988875444
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0036 Score=42.72 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 002716 513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (889)
Q Consensus 513 ~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 545 (889)
.+++.+|.+++.+|++++|+..|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456777778888888888888888888877764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.047 Score=58.27 Aligned_cols=132 Identities=10% Similarity=-0.069 Sum_probs=68.2
Q ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHH
Q 002716 481 PYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLA-LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLH 558 (889)
Q Consensus 481 a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l 558 (889)
+|........+.+..+.|...|.+++...+ ....+...|.+-+. .++.+.|..+|+.+++..|.+. ..+...
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~------~~~~~Y 76 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDP------DFWLEY 76 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-H------HHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCH------HHHHHH
Confidence 344444555555556666666666665444 55555555666444 4555556666666666666665 344334
Q ss_pred HHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCCh---HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Q 002716 559 MLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG---VLYFRQSLLLLRLNCPEAAMRSLQLARQHAA 635 (889)
Q Consensus 559 g~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~l~~al~~~p 635 (889)
.......++.+.|...| ++++..-|... .+|......-...|+.+......+++.+..|
T Consensus 77 ~~~l~~~~d~~~aR~lf------------------er~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~ 138 (280)
T PF05843_consen 77 LDFLIKLNDINNARALF------------------ERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFP 138 (280)
T ss_dssp HHHHHHTT-HHHHHHHH------------------HHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCcHHHHHHHH------------------HHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence 44445555555554444 55555444333 3444444444455555555555555555544
Q ss_pred C
Q 002716 636 S 636 (889)
Q Consensus 636 ~ 636 (889)
.
T Consensus 139 ~ 139 (280)
T PF05843_consen 139 E 139 (280)
T ss_dssp T
T ss_pred h
Confidence 4
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.32 Score=54.45 Aligned_cols=98 Identities=10% Similarity=0.028 Sum_probs=58.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHccCcc---hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHh----cCCH
Q 002716 718 LGSVYVDCGQLDLAADCYSNALKIRHT---RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSE----YCDR 790 (889)
Q Consensus 718 Lg~~y~~~g~~~~A~~~~~~al~~~p~---~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~----~~~~ 790 (889)
-|..+...|+...|+.|+..|+...|. -...+||.+....|-...|-..+.+++.+....+-.++..|. +.+.
T Consensus 613 aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i 692 (886)
T KOG4507|consen 613 AGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNI 692 (886)
T ss_pred ccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhh
Confidence 344455678888888888888888776 566777877777777766666666665555433333332222 1344
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHH
Q 002716 791 ELTRADLEMVTQLDPLRVYPYRYRA 815 (889)
Q Consensus 791 ~~A~~~l~~al~l~p~~~~~~~~la 815 (889)
+.|++.|++|+.++|+++..-..+-
T Consensus 693 ~~a~~~~~~a~~~~~~~~~~~~~l~ 717 (886)
T KOG4507|consen 693 SGALEAFRQALKLTTKCPECENSLK 717 (886)
T ss_pred HHHHHHHHHHHhcCCCChhhHHHHH
Confidence 5555555555555555555444443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.62 E-value=1.5 Score=48.09 Aligned_cols=378 Identities=9% Similarity=-0.065 Sum_probs=196.0
Q ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHcCCC-C-----HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHH
Q 002716 481 PYMYRASSLMTKQNVEAALAEINRILGFKL-A-----LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAA 554 (889)
Q Consensus 481 a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~-----~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a 554 (889)
.....|-++..++++.+|.+.|.++.+... + .+.+..+-.-.+-+++.+.-....-..-+..|... ..
T Consensus 8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~------~l 81 (549)
T PF07079_consen 8 LLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSA------YL 81 (549)
T ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCch------HH
Confidence 445678899999999999999999876544 2 23333333334456677766666666666777666 45
Q ss_pred HHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Q 002716 555 SQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA 634 (889)
Q Consensus 555 ~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 634 (889)
....+.+.++.+++++|.+.+ ..|.+.-+...-.-++.-+..--.+-..-.-.+.++...|++.++...+++.+..-
T Consensus 82 ~LF~~L~~Y~~k~~~kal~~l---s~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~l 158 (549)
T PF07079_consen 82 PLFKALVAYKQKEYRKALQAL---SVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERL 158 (549)
T ss_pred HHHHHHHHHHhhhHHHHHHHH---HHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 556678899999999997665 33333211000000011111001111222356788899999999999998876532
Q ss_pred -C----CcHHHHHH----HHHHHHh----cCCHHHHHHHHHHHH-------h------------------------cCCC
Q 002716 635 -A----SDHERLVY----EGWILYD----TSHCEEGLRKAEESI-------Q------------------------MKRS 670 (889)
Q Consensus 635 -p----~~~~~~~~----lg~~~~~----~g~~~eA~~~~~~al-------~------------------------~~p~ 670 (889)
| -+.+.+.. +|..|.- ....+-+..+|+.++ . +-|.
T Consensus 159 lkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~ 238 (549)
T PF07079_consen 159 LKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPK 238 (549)
T ss_pred hhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCH
Confidence 2 23344433 4444421 112222223333221 1 1111
Q ss_pred h--HHHHHHHHHHHHcCCCCCcc-------hhhhhhHHHHhcchhhh----Cch-----hHHHHHHHHHHHHcCChHHHH
Q 002716 671 F--EAFFLKAYALADSSQDSSCS-------STVVSLLEDALKCPSDR----LRK-----GQALNNLGSVYVDCGQLDLAA 732 (889)
Q Consensus 671 ~--~a~~~la~~~~~~~~~~~~~-------~~~~~~~~~Al~~~~~~----~~~-----~~~~~~Lg~~y~~~g~~~~A~ 732 (889)
. ..+..+-....+....+... +...+..+++....+.. +.+ .....++-......++...|.
T Consensus 239 e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~ 318 (549)
T PF07079_consen 239 ERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMSDPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAK 318 (549)
T ss_pred hhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhcChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 1 11111111111111111110 00111112222111111 111 334444445556677777777
Q ss_pred HHHHHHHccCcc-------------------------------------------------hHHHHHHHHHHHcCC-HHH
Q 002716 733 DCYSNALKIRHT-------------------------------------------------RAHQGLARVHFLKNN-KTT 762 (889)
Q Consensus 733 ~~~~~al~~~p~-------------------------------------------------~a~~~La~~~~~~g~-~~~ 762 (889)
+++.-....+|. .-+..-|.-+.+.|+ -++
T Consensus 319 q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dek 398 (549)
T PF07079_consen 319 QYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEK 398 (549)
T ss_pred HHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHH
Confidence 766555444443 001112233444555 677
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhc--CCHHHHHH--HHHHH---------HhcCC---CChHHHHHHHH--HHHhCCCH
Q 002716 763 AYEEMTKLIKKARNNASAYEKRSEY--CDRELTRA--DLEMV---------TQLDP---LRVYPYRYRAA--VLMDSHKE 824 (889)
Q Consensus 763 A~~~~~~al~~~~~~~~~~~~~~~~--~~~~~A~~--~l~~a---------l~l~p---~~~~~~~~la~--~~~~~g~~ 824 (889)
|++.++.+++-.+.+...-+..-.+ ..+.+|+. .+.+. ..+.| .+.+.-+.+++ -+...|+|
T Consensus 399 alnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey 478 (549)
T PF07079_consen 399 ALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEY 478 (549)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccH
Confidence 7777777777666433221111111 01122211 11111 11222 23344444544 56788999
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002716 825 NEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAA 867 (889)
Q Consensus 825 ~eA~~~l~kal~~~p~~~~l~l~a~~~~~~g~~~~A~~~~~~a 867 (889)
.++.-+-.-..++.|.+..+.+.|.+....++|++|...+...
T Consensus 479 ~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 479 HKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 9999988888999999999999999988889999999887653
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.60 E-value=1.5 Score=47.90 Aligned_cols=393 Identities=11% Similarity=0.018 Sum_probs=209.1
Q ss_pred HHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 002716 467 DLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (889)
Q Consensus 467 ~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 545 (889)
.+..-++-+|++...|+.+-..+-.+|.+++-.+.+++...-.| -+.++.+.-.--++..+|..-...|.+.|...-+
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~- 108 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN- 108 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-
Confidence 46667888999999999999999999999999999999998888 5555544433345667888888888888764322
Q ss_pred cchhhhHHHHHHHHHHHHH-hhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHH---------
Q 002716 546 RMFEGRVAASQLHMLVREH-IDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLL--------- 615 (889)
Q Consensus 546 ~~~~~~~~a~~~lg~~~~~-~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~--------- 615 (889)
. ..|.+. .-|.+ .++.-+...-+.+++. ....-...-.+|.....|...+..+.
T Consensus 109 l------dLW~lY-l~YIRr~n~~~tGq~r~~i~~a---------yefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwE 172 (660)
T COG5107 109 L------DLWMLY-LEYIRRVNNLITGQKRFKIYEA---------YEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWE 172 (660)
T ss_pred H------hHHHHH-HHHHHhhCcccccchhhhhHHH---------HHHHHhcccccccccchHHHHHHHHHhccccccHH
Confidence 1 122211 11211 1111100000000000 00012233456777777777666543
Q ss_pred HhCCHHHHHHHHHHHHHcCCCcHHH-HH---------HHHHHHH----hcCCHHHHHHHHHHHHhc-------CCCh---
Q 002716 616 RLNCPEAAMRSLQLARQHAASDHER-LV---------YEGWILY----DTSHCEEGLRKAEESIQM-------KRSF--- 671 (889)
Q Consensus 616 ~~g~~~~A~~~l~~al~~~p~~~~~-~~---------~lg~~~~----~~g~~~eA~~~~~~al~~-------~p~~--- 671 (889)
++.+.+.-.+.|.+++..--++.+- |. +....-- ..--|..|...|++...+ +|-+
T Consensus 173 eQqrid~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt 252 (660)
T COG5107 173 EQQRIDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRT 252 (660)
T ss_pred HHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhh
Confidence 2334455555677777653333221 11 1111100 111244566666665433 1211
Q ss_pred ---------HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCc----hhHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002716 672 ---------EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLR----KGQALNNLGSVYVDCGQLDLAADCYSNA 738 (889)
Q Consensus 672 ---------~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~----~~~~~~~Lg~~y~~~g~~~~A~~~~~~a 738 (889)
..|.+...--...+..-.. .. ...+.--.+++++. -++.|+.........++-..|+...+++
T Consensus 253 ~nK~~r~s~S~WlNwIkwE~en~l~L~~-~~---~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg 328 (660)
T COG5107 253 ANKAARTSDSNWLNWIKWEMENGLKLGG-RP---HEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERG 328 (660)
T ss_pred hccccccccchhhhHhhHhhcCCcccCC-Cc---HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhc
Confidence 1122222111111111100 00 01111112222211 1566776666677788999999999999
Q ss_pred HccCcchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc---------------cC----HHHHHHHHh-c-----------
Q 002716 739 LKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKAR---------------NN----ASAYEKRSE-Y----------- 787 (889)
Q Consensus 739 l~~~p~~a~~~La~~~~~~g~~~~A~~~~~~al~~~~---------------~~----~~~~~~~~~-~----------- 787 (889)
+...|. ....++..|...++-++-...|+++++.-. ++ ......+.. +
T Consensus 329 ~~~sps-L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v 407 (660)
T COG5107 329 IEMSPS-LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYV 407 (660)
T ss_pred ccCCCc-hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHH
Confidence 888886 455677777777776666666665543221 11 112222211 1
Q ss_pred ---CCHHHHHHHHHHHHhcCCCChHHHHHHHH-HHHhCCCHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHcCCHHHHHH
Q 002716 788 ---CDRELTRADLEMVTQLDPLRVYPYRYRAA-VLMDSHKENEAIAELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALR 862 (889)
Q Consensus 788 ---~~~~~A~~~l~~al~l~p~~~~~~~~la~-~~~~~g~~~eA~~~l~kal~~~p~~~~l~-l~a~~~~~~g~~~~A~~ 862 (889)
.-.+.|...|.++-+..-....+|..-|. -+...|++.-|...|+-.+...||...+. -.-.+....+|-..|..
T Consensus 408 ~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~nara 487 (660)
T COG5107 408 LRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARA 487 (660)
T ss_pred HHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHH
Confidence 13455666676665543222233333332 34557888888888888888888875554 33444555678888888
Q ss_pred HHHHHHccCCCCHHHHHHHH
Q 002716 863 DCRAALSVDPNDQEMLELHS 882 (889)
Q Consensus 863 ~~~~al~l~P~~~~~l~l~~ 882 (889)
.|++++..-.+. ++-++|.
T Consensus 488 LFetsv~r~~~~-q~k~iy~ 506 (660)
T COG5107 488 LFETSVERLEKT-QLKRIYD 506 (660)
T ss_pred HHHHhHHHHHHh-hhhHHHH
Confidence 888776543333 3334443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.12 Score=59.27 Aligned_cols=173 Identities=12% Similarity=-0.065 Sum_probs=113.3
Q ss_pred HHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC--CHH-HHHHHHHH-------HH--hcccHHHHHH
Q 002716 466 EDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL--ALE-CLELRFCF-------FL--ALEDYQAALC 533 (889)
Q Consensus 466 ~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p--~~~-~l~~~a~~-------~~--~~g~~~~A~~ 533 (889)
..|+=.+.+-|... ..+-...--.|+-+.++..+.++.+... .+- .+.+++.. -. ...+.+.|..
T Consensus 178 G~f~L~lSlLPp~~---~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~ 254 (468)
T PF10300_consen 178 GLFNLVLSLLPPKV---LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEE 254 (468)
T ss_pred HHHHHHHHhCCHHH---HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHH
Confidence 33444555544322 2223333456788888888888876443 222 22222111 11 2456778888
Q ss_pred HHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCC----CChHHHHH
Q 002716 534 DVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA----PKGVLYFR 609 (889)
Q Consensus 534 ~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p----~~~~~~~~ 609 (889)
.+....+..|+.. --+...|.++...|+.++|+.++ ++++.... -....++.
T Consensus 255 lL~~~~~~yP~s~------lfl~~~gR~~~~~g~~~~Ai~~~------------------~~a~~~q~~~~Ql~~l~~~E 310 (468)
T PF10300_consen 255 LLEEMLKRYPNSA------LFLFFEGRLERLKGNLEEAIESF------------------ERAIESQSEWKQLHHLCYFE 310 (468)
T ss_pred HHHHHHHhCCCcH------HHHHHHHHHHHHhcCHHHHHHHH------------------HHhccchhhHHhHHHHHHHH
Confidence 8888888888887 45666788888889999997777 54443221 12346788
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCCcHH-HHHHHHHHHHhcCCH-------HHHHHHHHHHH
Q 002716 610 QSLLLLRLNCPEAAMRSLQLARQHAASDHE-RLVYEGWILYDTSHC-------EEGLRKAEESI 665 (889)
Q Consensus 610 la~~~~~~g~~~~A~~~l~~al~~~p~~~~-~~~~lg~~~~~~g~~-------~eA~~~~~~al 665 (889)
+|.++..+++|++|..++.+..+.+.-... ..|..|.++...|+. ++|.+.+.++-
T Consensus 311 l~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 311 LAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 999999999999999999998887665433 345678888888888 66666666654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.48 E-value=2.1 Score=49.19 Aligned_cols=135 Identities=12% Similarity=-0.050 Sum_probs=77.7
Q ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHH
Q 002716 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLH 558 (889)
Q Consensus 479 ~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l 558 (889)
..++...|..+.....|++|.++|.+.-. ...+..+++...+|++-. .....-|++. ..+-.+
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~-------~e~~~ecly~le~f~~LE----~la~~Lpe~s------~llp~~ 858 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYCGD-------TENQIECLYRLELFGELE----VLARTLPEDS------ELLPVM 858 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc-------hHhHHHHHHHHHhhhhHH----HHHHhcCccc------chHHHH
Confidence 45788999999999999999999988643 234455566666665533 3333446666 445556
Q ss_pred HHHHHHhhchhHHHHHHHhhh-hcccccccchHHHHHHHHhcC-----CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 002716 559 MLVREHIDNWTIADCWLQLYD-RWSSVDDIGSLSVIYQMLESD-----APKGVLYFRQSLLLLRLNCPEAAMRSLQLA 630 (889)
Q Consensus 559 g~~~~~~~~~~~A~~~~~l~~-~~~~~dd~~sl~~~~~al~~~-----p~~~~~~~~la~~~~~~g~~~~A~~~l~~a 630 (889)
|......|.-++|.+.+-... ...+++-.-.+..+.++.++. |.-..+....+.-++..++..+|++..+++
T Consensus 859 a~mf~svGMC~qAV~a~Lr~s~pkaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 859 ADMFTSVGMCDQAVEAYLRRSLPKAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHHHHhhchHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 677777777777766551110 000111111233444444433 333333444555566667777777766665
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.013 Score=60.97 Aligned_cols=101 Identities=19% Similarity=0.190 Sum_probs=87.4
Q ss_pred hccCcchhHHHHHhhcCChhHHHHHHHHhhhcC---CC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHH
Q 002716 443 SSVTPLGWMYQERSLYCEGDKRWEDLDKATALD---PT-LSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLEL 517 (889)
Q Consensus 443 ~~~~~~g~~~~~~~~~~~~~~A~~~~~~al~~d---p~-~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~ 517 (889)
..++..|.-|+..+.| ..|...|.+.++.. |+ ++..|.++|.+.+..|+|..|+....+++.++| +..+++.
T Consensus 82 en~KeeGN~~fK~Kry---k~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R 158 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRY---KDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIR 158 (390)
T ss_pred HHHHHHhHHHHHhhhH---HHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence 3455678888888999 99999999999874 43 345688999999999999999999999999999 9999999
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhCCCCc
Q 002716 518 RFCFFLALEDYQAALCDVQAILTLSPDYR 546 (889)
Q Consensus 518 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 546 (889)
-+.+++.+..+++|...++..+.++-+..
T Consensus 159 ~Akc~~eLe~~~~a~nw~ee~~~~d~e~K 187 (390)
T KOG0551|consen 159 GAKCLLELERFAEAVNWCEEGLQIDDEAK 187 (390)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 99999999999999999999987765544
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.53 Score=47.81 Aligned_cols=107 Identities=14% Similarity=0.098 Sum_probs=55.7
Q ss_pred hHHHHHHHHhhhcCCCChhhHHHHHHHHHhcc-CHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHH-HHHHHHHHH
Q 002716 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQ-NVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQ-AALCDVQAI 538 (889)
Q Consensus 462 ~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g-~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~-~A~~~~~~a 538 (889)
..|+..-..++.++|-+-..|.++-.++...+ +..+-+..++.+++-+| +...++-+-.+....|++. .-+...+.+
T Consensus 60 ~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~ 139 (318)
T KOG0530|consen 60 PRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLM 139 (318)
T ss_pred HHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHH
Confidence 33444445555555555555555554444332 34445555555555555 5555555555555555555 455555555
Q ss_pred HHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHH
Q 002716 539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCW 574 (889)
Q Consensus 539 l~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~ 574 (889)
+..+..+. .++....-+....+.|+.-+.+
T Consensus 140 l~~DaKNY------HaWshRqW~~r~F~~~~~EL~y 169 (318)
T KOG0530|consen 140 LDDDAKNY------HAWSHRQWVLRFFKDYEDELAY 169 (318)
T ss_pred Hhccccch------hhhHHHHHHHHHHhhHHHHHHH
Confidence 55555555 4555555555555555554333
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.13 E-value=1.7 Score=49.97 Aligned_cols=32 Identities=9% Similarity=-0.155 Sum_probs=21.0
Q ss_pred HcCCCCHHHHHHHHHHHHhcccHHHHHHHHHH
Q 002716 506 LGFKLALECLELRFCFFLALEDYQAALCDVQA 537 (889)
Q Consensus 506 l~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~ 537 (889)
++.+|.+..+.+++......-+++.|...|-+
T Consensus 686 iEdnPHprLWrllAe~Al~Kl~l~tAE~AFVr 717 (1189)
T KOG2041|consen 686 IEDNPHPRLWRLLAEYALFKLALDTAEHAFVR 717 (1189)
T ss_pred HhcCCchHHHHHHHHHHHHHHhhhhHhhhhhh
Confidence 34467777777777777666666666655544
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.11 E-value=2.9 Score=46.00 Aligned_cols=186 Identities=16% Similarity=0.123 Sum_probs=99.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCChHHHHHHH---HHHHHcC-CCCCc---chhhhhhHHHHhcchhhhCchhHHHHHHH
Q 002716 647 ILYDTSHCEEGLRKAEESIQMKRSFEAFFLKA---YALADSS-QDSSC---SSTVVSLLEDALKCPSDRLRKGQALNNLG 719 (889)
Q Consensus 647 ~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la---~~~~~~~-~~~~~---~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg 719 (889)
...++++..+|-+++.-...++|+....-.+. ..+.+.- .++.. ....+..++++...-.+..+-..-+..-+
T Consensus 307 ~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~A 386 (549)
T PF07079_consen 307 FKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGA 386 (549)
T ss_pred HHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 34567888888888887777788762111110 0111100 00000 01111122222111111111133344445
Q ss_pred HHHHHcCC-hHHHHHHHHHHHccCcchH-HHHHHHHHHHcCCHHHHHH--HHHHHHHHhc------------cCHHHHHH
Q 002716 720 SVYVDCGQ-LDLAADCYSNALKIRHTRA-HQGLARVHFLKNNKTTAYE--EMTKLIKKAR------------NNASAYEK 783 (889)
Q Consensus 720 ~~y~~~g~-~~~A~~~~~~al~~~p~~a-~~~La~~~~~~g~~~~A~~--~~~~al~~~~------------~~~~~~~~ 783 (889)
.-+-+.|+ -++|+..++.+++..|.+. -.+.. ..+-...|.+|+. .+.+++.... .+...-+.
T Consensus 387 k~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v-~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~ 465 (549)
T PF07079_consen 387 KHLWEIGQCDEKALNLLKLILQFTNYDIECENIV-FLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANF 465 (549)
T ss_pred HHHHhcCCccHHHHHHHHHHHHhccccHHHHHHH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHH
Confidence 55666666 7889999999988776521 11111 1111222333332 2233332221 22222222
Q ss_pred HH--hc----CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 002716 784 RS--EY----CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRA 834 (889)
Q Consensus 784 ~~--~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~ka 834 (889)
++ .| |++.++.-+-.=..+++| .+.+++.+|.+++..++|++|-.++.+.
T Consensus 466 LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 466 LADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 22 23 788998888888889999 8999999999999999999999998763
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.0024 Score=66.61 Aligned_cols=83 Identities=23% Similarity=0.227 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002716 789 DRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL-HLLHLRAAFHEHTGDVLGALRDCRAA 867 (889)
Q Consensus 789 ~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~-~~l~l~a~~~~~~g~~~~A~~~~~~a 867 (889)
.++.|+..|..+++++|.....|-.+|.++.+.++...|+..+..+++++||. .-+..++.....+|++++|..+++.+
T Consensus 129 ~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a 208 (377)
T KOG1308|consen 129 EFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALA 208 (377)
T ss_pred chhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHH
Confidence 34555555555555555555555555556666666666666666666666554 22235555555556666666666665
Q ss_pred HccC
Q 002716 868 LSVD 871 (889)
Q Consensus 868 l~l~ 871 (889)
.+++
T Consensus 209 ~kld 212 (377)
T KOG1308|consen 209 CKLD 212 (377)
T ss_pred Hhcc
Confidence 5554
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.0098 Score=41.31 Aligned_cols=28 Identities=25% Similarity=0.457 Sum_probs=24.3
Q ss_pred HHHHhhhHHHhcccHHHHHHHHHHHHHc
Q 002716 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNA 412 (889)
Q Consensus 385 a~~~lG~~~~~~g~~~eA~~~~~~al~~ 412 (889)
++.+||.+|...|+|++|+++|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4789999999999999999999998753
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.099 Score=49.70 Aligned_cols=58 Identities=21% Similarity=0.117 Sum_probs=39.1
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 002716 482 YMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAIL 539 (889)
Q Consensus 482 ~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al 539 (889)
...++..+...|++++|+..+++++..+| +...+..+..++...|+..+|+..|++..
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 44556667777777777777777777777 66677777777777777777777776653
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.015 Score=39.55 Aligned_cols=30 Identities=20% Similarity=0.215 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 002716 640 RLVYEGWILYDTSHCEEGLRKAEESIQMKR 669 (889)
Q Consensus 640 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p 669 (889)
+++.+|.++...|++++|+..|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455555555556666666666665555555
|
... |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.75 E-value=2.3 Score=45.66 Aligned_cols=173 Identities=15% Similarity=0.039 Sum_probs=110.4
Q ss_pred hhhHHHhcccHHHHHHHHHHHHHcCcchhHhhHHHHHhhcCCcHHHHHHHhhhhhccCcchhHHHHHhhcCChhHHHHHH
Q 002716 389 LGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDL 468 (889)
Q Consensus 389 lG~~~~~~g~~~eA~~~~~~al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~ 468 (889)
.+......+++..|..++..+-..+...+...++..+....... .+..+|...|
T Consensus 47 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~--------------------------~~~~~A~~~~ 100 (292)
T COG0790 47 NGAGSAYPPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVS--------------------------RDKTKAADWY 100 (292)
T ss_pred ccccccccccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCcc--------------------------ccHHHHHHHH
Confidence 34455577788888888888776444434444443332211110 1125566666
Q ss_pred HHhhhcCCCChhhHHHHHHHHHh----ccCHHHHHHHHHHHHcCCC-C-HHHHHHHHHHHHhcc-------cHHHHHHHH
Q 002716 469 DKATALDPTLSYPYMYRASSLMT----KQNVEAALAEINRILGFKL-A-LECLELRFCFFLALE-------DYQAALCDV 535 (889)
Q Consensus 469 ~~al~~dp~~~~a~~~la~~~~~----~g~~~~Al~~l~kal~~~p-~-~~~l~~~a~~~~~~g-------~~~~A~~~~ 535 (889)
..+. +..++.+.+.+|..|.. ..+..+|...|+++..... . ......+|.+|..-. +...|+..|
T Consensus 101 ~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~ 178 (292)
T COG0790 101 RCAA--ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLY 178 (292)
T ss_pred HHHh--hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHH
Confidence 6433 34566677778887776 4588888888888876644 3 344666677666531 334788888
Q ss_pred HHHHHhCCCCcchhhhHHHHHHHHHHHHH----hhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHH
Q 002716 536 QAILTLSPDYRMFEGRVAASQLHMLVREH----IDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQS 611 (889)
Q Consensus 536 ~~al~~~p~~~~~~~~~~a~~~lg~~~~~----~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la 611 (889)
.++-... +. .+...+|.+|.. ..++.+|..|| .++-+... ....+.++
T Consensus 179 ~~aa~~~--~~------~a~~~lg~~y~~G~Gv~~d~~~A~~wy------------------~~Aa~~g~--~~a~~~~~ 230 (292)
T COG0790 179 RKAAELG--NP------DAQLLLGRMYEKGLGVPRDLKKAFRWY------------------KKAAEQGD--GAACYNLG 230 (292)
T ss_pred HHHHHhc--CH------HHHHHHHHHHHcCCCCCcCHHHHHHHH------------------HHHHHCCC--HHHHHHHH
Confidence 8877655 44 677888877755 45778898898 88777766 77778888
Q ss_pred HHHHHhC
Q 002716 612 LLLLRLN 618 (889)
Q Consensus 612 ~~~~~~g 618 (889)
++...|
T Consensus 231 -~~~~~g 236 (292)
T COG0790 231 -LMYLNG 236 (292)
T ss_pred -HHHhcC
Confidence 666655
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.27 Score=46.64 Aligned_cols=111 Identities=20% Similarity=0.021 Sum_probs=74.7
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHH-HHHHhhhhcccccccchHHHHHHH
Q 002716 518 RFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIAD-CWLQLYDRWSSVDDIGSLSVIYQM 596 (889)
Q Consensus 518 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~-~~~~l~~~~~~~dd~~sl~~~~~a 596 (889)
.|......|+.+.++..+++++.+..+........ ..|-... ..+ +.
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~-------------~~W~~~~r~~l------------------~~- 59 (146)
T PF03704_consen 12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLDD-------------EEWVEPERERL------------------RE- 59 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT-------------STTHHHHHHHH------------------HH-
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc-------------cHHHHHHHHHH------------------HH-
Confidence 34455667888999999999998876554211100 1111110 000 11
Q ss_pred HhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002716 597 LESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI 665 (889)
Q Consensus 597 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al 665 (889)
....+...++..+...|++++|+..+++++..+|.+..++..+..++...|+..+|++.|++..
T Consensus 60 -----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 60 -----LYLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp -----HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 0123456778889999999999999999999999999999999999999999999999998875
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >smart00512 Skp1 Found in Skp1 protein family | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.049 Score=48.43 Aligned_cols=80 Identities=18% Similarity=0.223 Sum_probs=59.1
Q ss_pred cEEEEe-CCeEEEehHHHHhhcChhhhhhhcCCCCCCCc-CceEecCCCCCHHHHHHHHHhhccCCCC------------
Q 002716 183 NVVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLC-EDIDLSENNISPSGLRIISDFSVTGSLN------------ 248 (889)
Q Consensus 183 Dv~~~v-~~~~~~~hr~vLaa~s~~F~~mf~~~~~e~~~-~~i~l~~~~~~~~~~~~ll~~~Yt~~~~------------ 248 (889)
.|+++. +|.+|.+.+.+. ..|..++.|+.+.-.+... ..|.++ +|+..+|+.+++|++.-.-.
T Consensus 3 ~v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~--~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~ 79 (104)
T smart00512 3 YIKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLP--NVTSKILSKVIEYCEHHVDDPPSVADKDDIPT 79 (104)
T ss_pred eEEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCC--CcCHHHHHHHHHHHHHcccCCCCccccccccH
Confidence 356665 899999999976 7999999999764322222 578888 59999999999999743211
Q ss_pred ------CCCHHHHHHHHHHHHHH
Q 002716 249 ------GVTPNLLLEILIFANKF 265 (889)
Q Consensus 249 ------~~~~~~~~~ll~~A~~~ 265 (889)
.++.+.+.+|+.||+.+
T Consensus 80 wD~~F~~~d~~~l~dLl~AAnyL 102 (104)
T smart00512 80 WDAEFLKIDQETLFELILAANYL 102 (104)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh
Confidence 04455788888888865
|
Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues. |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.68 E-value=1.4 Score=47.35 Aligned_cols=188 Identities=15% Similarity=0.039 Sum_probs=112.0
Q ss_pred cCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCch--hHHHHHHHHHHHH----
Q 002716 651 TSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK--GQALNNLGSVYVD---- 724 (889)
Q Consensus 651 ~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~--~~~~~~Lg~~y~~---- 724 (889)
.+++..|...+..+-.... ..+...++..+.... .+.+...+|...+...... +.+.++||.+|..
T Consensus 54 ~~~~~~a~~~~~~a~~~~~-~~a~~~l~~~y~~g~-------gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv 125 (292)
T COG0790 54 PPDYAKALKSYEKAAELGD-AAALALLGQMYGAGK-------GVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGV 125 (292)
T ss_pred cccHHHHHHHHHHhhhcCC-hHHHHHHHHHHHhcc-------CccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCc
Confidence 4455555555555443110 034445555554433 1112355555555554333 4577778887776
Q ss_pred cCChHHHHHHHHHHHccCcchH---HHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhcCCHHHHHHHHHHHH
Q 002716 725 CGQLDLAADCYSNALKIRHTRA---HQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVT 801 (889)
Q Consensus 725 ~g~~~~A~~~~~~al~~~p~~a---~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~~al 801 (889)
..+..+|..+|++|.+.....+ ...++..|..-+ ...+.. .+...|...|.++-
T Consensus 126 ~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~-~~~~~~----------------------~~~~~A~~~~~~aa 182 (292)
T COG0790 126 PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGL-QALAVA----------------------YDDKKALYLYRKAA 182 (292)
T ss_pred ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCh-hhhccc----------------------HHHHhHHHHHHHHH
Confidence 4588999999999988876655 777777776643 110000 01135555555555
Q ss_pred hcCCCChHHHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---------------CHHHHHH
Q 002716 802 QLDPLRVYPYRYRAAVLMD----SHKENEAIAELSRAIAFKADLHLLHLRAAFHEHTG---------------DVLGALR 862 (889)
Q Consensus 802 ~l~p~~~~~~~~la~~~~~----~g~~~eA~~~l~kal~~~p~~~~l~l~a~~~~~~g---------------~~~~A~~ 862 (889)
... ++.+...+|.+|.. ..++.+|..+|.++-+... ....+..+.++.. | +...|..
T Consensus 183 ~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~-~~a~~~~~~~~~~-g~g~~~~~~~~~~~~~~~~~a~~ 258 (292)
T COG0790 183 ELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD-GAACYNLGLMYLN-GEGVKKAAFLTAAKEEDKKQALE 258 (292)
T ss_pred Hhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC-HHHHHHHHHHHhc-CCCchhhhhcccccCCCHHHHHH
Confidence 543 56777778877755 3377888888888888776 4444444544433 4 8888888
Q ss_pred HHHHHHccCCC
Q 002716 863 DCRAALSVDPN 873 (889)
Q Consensus 863 ~~~~al~l~P~ 873 (889)
.+.++-...+.
T Consensus 259 ~~~~~~~~~~~ 269 (292)
T COG0790 259 WLQKACELGFD 269 (292)
T ss_pred HHHHHHHcCCh
Confidence 88888877654
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.023 Score=38.68 Aligned_cols=32 Identities=16% Similarity=0.224 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 002716 809 YPYRYRAAVLMDSHKENEAIAELSRAIAFKAD 840 (889)
Q Consensus 809 ~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~ 840 (889)
.+|..+|.+|.+.|++++|+..|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35666777777777777777777777777664
|
... |
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.53 E-value=1.5 Score=49.38 Aligned_cols=82 Identities=17% Similarity=0.065 Sum_probs=65.1
Q ss_pred hHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 002716 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL---ALECLELRFCFFLALEDYQAALCDVQAI 538 (889)
Q Consensus 462 ~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p---~~~~l~~~a~~~~~~g~~~~A~~~~~~a 538 (889)
+...+.+....+..|+++.-.+..|..+...|+.+.|+..++..+...- ..-+++.+|+++..+.+|..|...+..+
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L 329 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLL 329 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4445556666778899988888889999999998888888888877111 4567788899999999999999999888
Q ss_pred HHhCC
Q 002716 539 LTLSP 543 (889)
Q Consensus 539 l~~~p 543 (889)
.....
T Consensus 330 ~desd 334 (546)
T KOG3783|consen 330 RDESD 334 (546)
T ss_pred Hhhhh
Confidence 76643
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.52 E-value=2.4 Score=43.33 Aligned_cols=173 Identities=12% Similarity=0.095 Sum_probs=129.7
Q ss_pred HHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhh
Q 002716 489 LMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLA-LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHID 566 (889)
Q Consensus 489 ~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~ 566 (889)
+.+..+-..|++.-..++..+| +...+..+-.+... ..+..+-+..+.+++..+|.+. ..++..-.+....|
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNY------QvWHHRr~ive~l~ 126 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNY------QVWHHRRVIVELLG 126 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccch------hHHHHHHHHHHHhc
Confidence 3455566788899999999999 66666665555544 4578888999999999999999 78888888888888
Q ss_pred chh-HHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 002716 567 NWT-IADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEG 645 (889)
Q Consensus 567 ~~~-~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg 645 (889)
+.. .- +.....++..+..+-.+|...-.+...-+.++.-+.+..+.++.+--+-.+|...-
T Consensus 127 d~s~rE------------------Lef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ry 188 (318)
T KOG0530|consen 127 DPSFRE------------------LEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRY 188 (318)
T ss_pred Ccccch------------------HHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheee
Confidence 765 33 33448999999999999999999999999999999999998887665555554322
Q ss_pred HHHHh-cC-----CHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHH-cC
Q 002716 646 WILYD-TS-----HCEEGLRKAEESIQMKRSF-EAFFLKAYALAD-SS 685 (889)
Q Consensus 646 ~~~~~-~g-----~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~-~~ 685 (889)
.+... .| ..+.-+.+..+.|.+.|++ .+|..+..++.. .|
T Consensus 189 fvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~g 236 (318)
T KOG0530|consen 189 FVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSG 236 (318)
T ss_pred EEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccC
Confidence 11111 12 2445677788889999999 888888877774 55
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.043 Score=41.68 Aligned_cols=43 Identities=26% Similarity=0.327 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHhhh
Q 002716 843 LLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVY 885 (889)
Q Consensus 843 ~l~l~a~~~~~~g~~~~A~~~~~~al~l~P~~~~~l~l~~~~~ 885 (889)
.++.++..+..+|+|++|.+..+.+|+.+|+|..+..+...+.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~ 45 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIE 45 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence 3456667777778888888888888888888888777766554
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.35 E-value=5.6 Score=43.73 Aligned_cols=439 Identities=15% Similarity=0.063 Sum_probs=230.6
Q ss_pred HHHHhhhhHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHcCcchhHhhHHHHHhhc-----CCcHHHHHHHhhhhhcc
Q 002716 371 RLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIK-----GHKLWAYEKLNSVISSV 445 (889)
Q Consensus 371 ~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~~~~al~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~~~~~ 445 (889)
++.+.-.+++.....|++|-.-+-.+|.+++-++.|++....-+...+ |+..+.. .++......+..++...
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~---aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEH---AWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccH---HHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 444444556666788999998888999999999999998876555443 3344444 34444444454444433
Q ss_pred Ccc-hhH-H---HHHhh-cCCh------hHHHHHHHHhhhcCCCChhhHHHHHHHHH---------hccCHHHHHHHHHH
Q 002716 446 TPL-GWM-Y---QERSL-YCEG------DKRWEDLDKATALDPTLSYPYMYRASSLM---------TKQNVEAALAEINR 504 (889)
Q Consensus 446 ~~~-g~~-~---~~~~~-~~~~------~~A~~~~~~al~~dp~~~~a~~~la~~~~---------~~g~~~~Al~~l~k 504 (889)
.++ -|+ | ..+.. ...| -+|.+..-..+-.+|.....|-.-+..+. ++.+.+.-...|.+
T Consensus 107 l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~r 186 (660)
T COG5107 107 LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMR 186 (660)
T ss_pred ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHH
Confidence 222 122 2 11211 1122 22222222233456766666655554432 33445555666777
Q ss_pred HHcCCC-CHHHHHHHH------------H--HHHhcccHHHHHHHHHHHHHhC-------CCCcchhhhHHHHHHHHHHH
Q 002716 505 ILGFKL-ALECLELRF------------C--FFLALEDYQAALCDVQAILTLS-------PDYRMFEGRVAASQLHMLVR 562 (889)
Q Consensus 505 al~~~p-~~~~l~~~a------------~--~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~~~a~~~lg~~~ 562 (889)
++..-- +.+-+...- . +--..--|..|...|++...+- |.+.....+
T Consensus 187 al~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK----------- 255 (660)
T COG5107 187 ALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANK----------- 255 (660)
T ss_pred HHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhcc-----------
Confidence 776422 332221111 0 1111223566777777765442 222211110
Q ss_pred HHhhchhHHHHHHHhhhhccccc------cc---chHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Q 002716 563 EHIDNWTIADCWLQLYDRWSSVD------DI---GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 633 (889)
Q Consensus 563 ~~~~~~~~A~~~~~l~~~~~~~d------d~---~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 633 (889)
..+.... .|+. .-+|..-+ +. .---.+++++.--|-.+.+|+-........++-+.|+...+++...
T Consensus 256 --~~r~s~S-~WlN-wIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~ 331 (660)
T COG5107 256 --AARTSDS-NWLN-WIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM 331 (660)
T ss_pred --ccccccc-hhhh-HhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC
Confidence 0000000 0110 00111000 00 0022456778888888999999998889999999999999998888
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhC-chh
Q 002716 634 AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRL-RKG 712 (889)
Q Consensus 634 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~-~~~ 712 (889)
.|. ..+.++..|.-..+.++-..+|+++++.- .-.+..+..-...+.+. ..+..-+..-+.. +-.
T Consensus 332 sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L---~r~ys~~~s~~~s~~D~--------N~e~~~Ell~kr~~k~t 397 (660)
T COG5107 332 SPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDL---KRKYSMGESESASKVDN--------NFEYSKELLLKRINKLT 397 (660)
T ss_pred CCc---hheeHHHHHhhcccHHHHhhhHHHHHHHH---HHHHhhhhhhhhccccC--------CccccHHHHHHHHhhhh
Confidence 887 55667777766667666667777766310 00011111111111100 0100000000000 112
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--hHHHHHH-HHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhc--
Q 002716 713 QALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLA-RVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEY-- 787 (889)
Q Consensus 713 ~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La-~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-- 787 (889)
.++.-+-+.-.+..-.+.|...|.++-+..-. ..+..-| .-|..+|++..|...++-.+...|+.+..-+..-.|
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi 477 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLI 477 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 23333344444556678888888888766511 2222222 235678999999999999999988777554444333
Q ss_pred --CCHHHHHHHHHHHHhcCCCC--hHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCH
Q 002716 788 --CDRELTRADLEMVTQLDPLR--VYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL 841 (889)
Q Consensus 788 --~~~~~A~~~l~~al~l~p~~--~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~ 841 (889)
++...|...|++++..-... ...|..+-.--..-|+...++..=++..+..|.-
T Consensus 478 ~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 478 RINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 78888888888776532211 2334333334445566666666666666666653
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.016 Score=40.19 Aligned_cols=25 Identities=44% Similarity=0.752 Sum_probs=13.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHH
Q 002716 715 LNNLGSVYVDCGQLDLAADCYSNAL 739 (889)
Q Consensus 715 ~~~Lg~~y~~~g~~~~A~~~~~~al 739 (889)
+.+||.+|...|++++|+.+|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555666666666666666666544
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.036 Score=37.25 Aligned_cols=33 Identities=24% Similarity=0.301 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 002716 513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (889)
Q Consensus 513 ~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 545 (889)
++++.+|.++...|++++|+..|+++++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 356778888888888888888888888888864
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.26 E-value=4.8 Score=53.09 Aligned_cols=311 Identities=15% Similarity=0.023 Sum_probs=163.9
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHH
Q 002716 517 LRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQM 596 (889)
Q Consensus 517 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~a 596 (889)
.+|.+-++.+.|..|+.++++- ...+....... .-+.++-.+|...++++.-.-.. ..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~-~~~ek~~~~~e--~l~fllq~lY~~i~dpDgV~Gv~-------------------~~ 1445 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESH-RSTEKEKETEE--ALYFLLQNLYGSIHDPDGVEGVS-------------------AR 1445 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHh-ccccchhHHHH--HHHHHHHHHHHhcCCcchhhhHH-------------------HH
Confidence 4577778888888888888875 22222221111 23334444666666666542111 11
Q ss_pred HhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHH
Q 002716 597 LESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFF 675 (889)
Q Consensus 597 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~ 675 (889)
...+| .....-..+...|+++.|..+|+++++.+|+....+...-...+..|++...+...+-...-.++. .-++
T Consensus 1446 r~a~~----sl~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~ 1521 (2382)
T KOG0890|consen 1446 RFADP----SLYQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELN 1521 (2382)
T ss_pred hhcCc----cHHHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHH
Confidence 11111 123344556778999999999999999999887777777777778888888888766555444444 4444
Q ss_pred HHHHHH-HHcCCCCCcchhhhhhHHHHhcchhhh-CchhHHHHHHHHHHHHcCChHHHHH--HHHHHHccCcchHHHHHH
Q 002716 676 LKAYAL-ADSSQDSSCSSTVVSLLEDALKCPSDR-LRKGQALNNLGSVYVDCGQLDLAAD--CYSNALKIRHTRAHQGLA 751 (889)
Q Consensus 676 ~la~~~-~~~~~~~~~~~~~~~~~~~Al~~~~~~-~~~~~~~~~Lg~~y~~~g~~~~A~~--~~~~al~~~p~~a~~~La 751 (889)
.++.-- ...+ .++.-....... .....+ ..+|.+.....+-+.-.. ..+.+-+ .....+.
T Consensus 1522 s~~~eaaW~l~-----------qwD~~e~~l~~~n~e~w~~-~~~g~~ll~~~~kD~~~~~~~i~~~r~----~~i~~ls 1585 (2382)
T KOG0890|consen 1522 SLGVEAAWRLS-----------QWDLLESYLSDRNIEYWSV-ESIGKLLLRNKKKDEIATLDLIENSRE----LVIENLS 1585 (2382)
T ss_pred HHHHHHHhhhc-----------chhhhhhhhhcccccchhH-HHHHHHHHhhcccchhhHHHHHHHHHH----HhhhhHH
Confidence 433221 2222 222222222211 000111 114554444333221111 1111000 0000011
Q ss_pred HHHHHcCCHHHHHHHHHHHHH------------Hhc------cCHHHHHHHHh----cCCHHHHHHHHHHHHh-------
Q 002716 752 RVHFLKNNKTTAYEEMTKLIK------------KAR------NNASAYEKRSE----YCDRELTRADLEMVTQ------- 802 (889)
Q Consensus 752 ~~~~~~g~~~~A~~~~~~al~------------~~~------~~~~~~~~~~~----~~~~~~A~~~l~~al~------- 802 (889)
.+-. .|-+..+++.+-++-- ... .+..-|.++.. +.+..+-+-.++++.-
T Consensus 1586 a~s~-~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~ 1664 (2382)
T KOG0890|consen 1586 ACSI-EGSYVRSYEILMKLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSN 1664 (2382)
T ss_pred Hhhc-cchHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhcccc
Confidence 1100 1122222222222211 111 11122333333 2333343444444431
Q ss_pred cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 002716 803 LDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVD 871 (889)
Q Consensus 803 l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~l~l~a~~~~~~g~~~~A~~~~~~al~l~ 871 (889)
++...+..|...|.+....|+++-|...+-+|.+..+. ....-+|....+.||-..|+..+++.++++
T Consensus 1665 ~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~-~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1665 LKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRLP-EIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred ccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcccc-hHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 23445788999999999999999999999999887743 344467777777799999999999999655
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.08 Score=40.22 Aligned_cols=43 Identities=30% Similarity=0.430 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHH
Q 002716 513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLV 561 (889)
Q Consensus 513 ~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~ 561 (889)
++++.+|..++++|+|++|..+.+.+|+.+|++. .+..+...+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~------Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNR------QAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H------HHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH------HHHHHHHHH
Confidence 5788889999999999999999999999999998 665444443
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.023 Score=59.59 Aligned_cols=87 Identities=21% Similarity=0.169 Sum_probs=61.2
Q ss_pred HHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHH
Q 002716 755 FLKNNKTTAYEEMTKLIKKARNNASAYEKRSEY----CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAE 830 (889)
Q Consensus 755 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~ 830 (889)
+..|.+++|++.+..+|+++|..+.+|..++.. .....|+.++..++.++|+....|..++.....+|++.+|...
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 345666666666666666666666666655552 5567777777777778777777777777777778888888888
Q ss_pred HHHHHhcCCCH
Q 002716 831 LSRAIAFKADL 841 (889)
Q Consensus 831 l~kal~~~p~~ 841 (889)
+..+.+++-+.
T Consensus 205 l~~a~kld~dE 215 (377)
T KOG1308|consen 205 LALACKLDYDE 215 (377)
T ss_pred HHHHHhccccH
Confidence 88887766553
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.97 Score=49.25 Aligned_cols=151 Identities=15% Similarity=0.006 Sum_probs=96.4
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhCC------------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHH
Q 002716 591 SVIYQMLESDAPKGVLYFRQSLLLLRLNC------------PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGL 658 (889)
Q Consensus 591 ~~~~~al~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~ 658 (889)
..+++.++.+|.+..+|..+....-..-. .+.-+..|++|++.+|++...+..+-....+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 44588899999999999988776554422 355667899999999999998888888888888999999
Q ss_pred HHHHHHHhcCCCh-HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCch---------------hHHHHHHHHHH
Q 002716 659 RKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK---------------GQALNNLGSVY 722 (889)
Q Consensus 659 ~~~~~al~~~p~~-~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~---------------~~~~~~Lg~~y 722 (889)
+.+++++..+|+. ..|...-...... ...-....+...+.+++..+...... ..++.++....
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~-~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl 164 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSN-FASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFL 164 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHH
Confidence 9999999999987 5554332222111 11112233444455554444433110 23334444445
Q ss_pred HHcCChHHHHHHHHHHHccC
Q 002716 723 VDCGQLDLAADCYSNALKIR 742 (889)
Q Consensus 723 ~~~g~~~~A~~~~~~al~~~ 742 (889)
.+.|..+.|+..++..++.+
T Consensus 165 ~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 165 RQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHCCchHHHHHHHHHHHHHH
Confidence 55555566665555555543
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.49 Score=48.05 Aligned_cols=50 Identities=14% Similarity=0.139 Sum_probs=42.2
Q ss_pred HhCCHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002716 616 RLNCPEAAMRSLQLARQHAASDH----ERLVYEGWILYDTSHCEEGLRKAEESI 665 (889)
Q Consensus 616 ~~g~~~~A~~~l~~al~~~p~~~----~~~~~lg~~~~~~g~~~eA~~~~~~al 665 (889)
+..++++|+..|++++++.+... .++...-.+++.+|++++-...|.+.+
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 44589999999999999988654 356677788999999999999999887
|
|
| >PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.12 Score=40.96 Aligned_cols=55 Identities=22% Similarity=0.210 Sum_probs=43.9
Q ss_pred EEEEe-CCeEEEehHHHHhhcChhhhhhhcCCCCCCCcCceEecCCCCCHHHHHHHHHhhc
Q 002716 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSV 243 (889)
Q Consensus 184 v~~~v-~~~~~~~hr~vLaa~s~~F~~mf~~~~~e~~~~~i~l~~~~~~~~~~~~ll~~~Y 243 (889)
|+|+. +|+.|.+.+.+. ..|..++.||.+.-.++. .|.|+ +|+..+|+.+++|++
T Consensus 3 v~L~SsDg~~f~V~~~~a-~~S~~i~~ml~~~~~~~~--~Ipl~--~v~~~~L~kViewc~ 58 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAA-KQSKTIKNMLEDLGDEDE--PIPLP--NVSSRILKKVIEWCE 58 (62)
T ss_dssp EEEEETTSEEEEEEHHHH-TTSHHHHHHHHCTCCCGT--EEEET--TS-HHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHH-HHhHHHHHHHhhhccccc--ccccC--ccCHHHHHHHHHHHH
Confidence 56665 899999999875 699999999986433333 79999 599999999999986
|
It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A .... |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.052 Score=36.44 Aligned_cols=31 Identities=13% Similarity=0.107 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002716 640 RLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (889)
Q Consensus 640 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 670 (889)
+++.+|.++...|++++|+..|++.++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3444555555555555555555555544443
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.28 Score=42.19 Aligned_cols=65 Identities=17% Similarity=0.094 Sum_probs=47.8
Q ss_pred HHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHhccc
Q 002716 463 KRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL---ALECLELRFCFFLALED 527 (889)
Q Consensus 463 ~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p---~~~~l~~~a~~~~~~g~ 527 (889)
..+..++++++.+|++..+.+.+|..++..|++++|++.+-.+++.++ +..+...+-.++-..|.
T Consensus 6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 6 PDIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 346778899999999999999999999999999999999999999887 33444444444444444
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.42 E-value=1.9 Score=44.02 Aligned_cols=50 Identities=16% Similarity=0.310 Sum_probs=36.9
Q ss_pred hccCHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 002716 491 TKQNVEAALAEINRILGFKL-----ALECLELRFCFFLALEDYQAALCDVQAILT 540 (889)
Q Consensus 491 ~~g~~~~Al~~l~kal~~~p-----~~~~l~~~a~~~~~~g~~~~A~~~~~~al~ 540 (889)
...+.++|+..|++++++.+ ...++-....+++.+|+|++-...|.+++.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 34477888888888888777 234555667788888888888888888775
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.21 Score=52.47 Aligned_cols=77 Identities=16% Similarity=0.092 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHhhhc
Q 002716 810 PYRYRAAVLMDSHKENEAIAELSRAIAFKADLHL-LHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVYS 886 (889)
Q Consensus 810 ~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~-l~l~a~~~~~~g~~~~A~~~~~~al~l~P~~~~~l~l~~~~~~ 886 (889)
...++-.+|.+.++++.|+...+..+.+.|+... +.-+|.+|.++|.+..|..+++..++..|+++++.-+-.++.+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 3456777899999999999999999999999744 4479999999999999999999999999999988766665543
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.48 Score=43.16 Aligned_cols=78 Identities=23% Similarity=0.189 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHHhCCC---HHHHHHHHHHHHh-cCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHH
Q 002716 808 VYPYRYRAAVLMDSHK---ENEAIAELSRAIA-FKADL--HLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELH 881 (889)
Q Consensus 808 ~~~~~~la~~~~~~g~---~~eA~~~l~kal~-~~p~~--~~l~l~a~~~~~~g~~~~A~~~~~~al~l~P~~~~~l~l~ 881 (889)
....+++|+++....+ ..+.+..++..++ -.|+. +.++.++.-+.++|+|++++++....++.+|+|+++.++-
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 4567788998887654 5678899999996 55553 6777888888888999999999999999999999999887
Q ss_pred Hhhh
Q 002716 882 SRVY 885 (889)
Q Consensus 882 ~~~~ 885 (889)
..+.
T Consensus 112 ~~ie 115 (149)
T KOG3364|consen 112 ETIE 115 (149)
T ss_pred HHHH
Confidence 6654
|
|
| >KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.13 Score=50.20 Aligned_cols=94 Identities=19% Similarity=0.164 Sum_probs=75.9
Q ss_pred ccccEEEEeCCeEEEehHHHHhhcCh--hhhhhhcCC---CCCCCcCceEecCCCCCHHHHHHHHHhhccCCCCCCCHHH
Q 002716 180 VLRNVVFRIHEEKIECDRQKFAALSA--PFSAMLNGS---FMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (889)
Q Consensus 180 ~~~Dv~~~v~~~~~~~hr~vLaa~s~--~F~~mf~~~---~~e~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~ 254 (889)
..+=|.+.++|+.|.--+--|..+-| -.-+||.+. -.|+++.-+-|. -+|.-|+.+++|+..|.++..+.-+
T Consensus 7 ~~~~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lID---Rsp~yFepIlNyLr~Gq~~~~s~i~ 83 (302)
T KOG1665|consen 7 LSSMVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLID---RSPKYFEPILNYLRDGQIPSLSDID 83 (302)
T ss_pred hhhhheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEc---cCchhhHHHHHHHhcCceeecCCcc
Confidence 34567888999999888777777765 567888762 245556666666 7999999999999999999666678
Q ss_pred HHHHHHHHHHHcHHHHHHHHHH
Q 002716 255 LLEILIFANKFCCERLKDACDR 276 (889)
Q Consensus 255 ~~~ll~~A~~~~~~~l~~~~~~ 276 (889)
+.++|..|++|.+-.|++.++.
T Consensus 84 ~lgvLeeArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 84 CLGVLEEARFFQILSLKDHLED 105 (302)
T ss_pred HHHHHHHhhHHhhHhHHhHHhh
Confidence 9999999999998888888876
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=94.26 E-value=19 Score=44.70 Aligned_cols=97 Identities=14% Similarity=0.070 Sum_probs=79.9
Q ss_pred chhHHHHHhhcCChhHHHHHHHHhhhcCCCChh---hHHHHHHHHHhc-------cCHHHHHHHHHHHHcCCCCHHHHHH
Q 002716 448 LGWMYQERSLYCEGDKRWEDLDKATALDPTLSY---PYMYRASSLMTK-------QNVEAALAEINRILGFKLALECLEL 517 (889)
Q Consensus 448 ~g~~~~~~~~~~~~~~A~~~~~~al~~dp~~~~---a~~~la~~~~~~-------g~~~~Al~~l~kal~~~p~~~~l~~ 517 (889)
...++...++| +.|+..|.+.....|...+ +.+..|..+..+ ..+++|+..|++.-.--..+--|..
T Consensus 481 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (932)
T PRK13184 481 VPDAFLAEKLY---DQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLG 557 (932)
T ss_pred CcHHHHhhHHH---HHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHh
Confidence 45678888999 9999999999999998765 445566666532 2688999999987654446777888
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhCCCCcc
Q 002716 518 RFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (889)
Q Consensus 518 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 547 (889)
.|.+|..+|+|++-++.|.-+++..|+++.
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (932)
T PRK13184 558 KALVYQRLGEYNEEIKSLLLALKRYSQHPE 587 (932)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCCCc
Confidence 899999999999999999999999999984
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=94.20 E-value=1.6 Score=48.32 Aligned_cols=144 Identities=16% Similarity=0.030 Sum_probs=97.4
Q ss_pred HhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHH---------cC-----CC-------------CH---HHHHHHH
Q 002716 470 KATALDPTLSYPYMYRASSLMTKQNVEAALAEINRIL---------GF-----KL-------------AL---ECLELRF 519 (889)
Q Consensus 470 ~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal---------~~-----~p-------------~~---~~l~~~a 519 (889)
..+..+|....++..++.++..+|+++.|.+.+++++ .+ ++ |. .+++...
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 3457789999999999999999999999999999885 12 11 11 2344455
Q ss_pred HHHHhcccHHHHHHHHHHHHHhCCC-CcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHh
Q 002716 520 CFFLALEDYQAALCDVQAILTLSPD-YRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE 598 (889)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~ 598 (889)
......|-+..|.+..+-++.+||. ++ ..+...+-....+.++++--+... +....
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP-----~g~ll~ID~~ALrs~~y~~Li~~~------------------~~~~~ 167 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDP-----LGVLLFIDYYALRSRQYQWLIDFS------------------ESPLA 167 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCc-----chhHHHHHHHHHhcCCHHHHHHHH------------------HhHhh
Confidence 6677889999999999999999999 66 124444445555666665443333 22221
Q ss_pred cCC-----CChHHHHHHHHHHHHhCCH---------------HHHHHHHHHHHHcCCC
Q 002716 599 SDA-----PKGVLYFRQSLLLLRLNCP---------------EAAMRSLQLARQHAAS 636 (889)
Q Consensus 599 ~~p-----~~~~~~~~la~~~~~~g~~---------------~~A~~~l~~al~~~p~ 636 (889)
... .-|..-+..+.++...++. +.|...+.+|+...|.
T Consensus 168 ~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 168 KCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred hhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 100 1234556677777777776 6677777777766664
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.33 Score=41.71 Aligned_cols=74 Identities=9% Similarity=-0.089 Sum_probs=47.4
Q ss_pred hHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHhcCCHHHHHHHHH
Q 002716 589 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD--HERLVYEGWILYDTSHCEEGLRKAE 662 (889)
Q Consensus 589 sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~--~~~~~~lg~~~~~~g~~~eA~~~~~ 662 (889)
.+..+++.++.+|++..+.+.+|..+...|++++|+..+-.+++.+++. ..+...+-.++...|.-+.-...|+
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~R 82 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYR 82 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHH
Confidence 3566688888888888888888888888888888888888888877654 3444444444544555443333333
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=94.16 E-value=1.1 Score=43.97 Aligned_cols=118 Identities=19% Similarity=0.146 Sum_probs=84.8
Q ss_pred hhHHHHhcchhhhCch---hHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc-----hHHHHHHHHHHHcCCHHHHHHHH
Q 002716 696 SLLEDALKCPSDRLRK---GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-----RAHQGLARVHFLKNNKTTAYEEM 767 (889)
Q Consensus 696 ~~~~~Al~~~~~~~~~---~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~-----~a~~~La~~~~~~g~~~~A~~~~ 767 (889)
..++.-++.++....+ ..++..+|..|...|+++.|+++|.++.+.... +.+..+.++....|++......+
T Consensus 17 ~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i 96 (177)
T PF10602_consen 17 EKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYI 96 (177)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3566666666665444 578999999999999999999999998876543 78888999999999999888888
Q ss_pred HHHHHHhccCH-HHHHHHHhcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q 002716 768 TKLIKKARNNA-SAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFK 838 (889)
Q Consensus 768 ~~al~~~~~~~-~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~ 838 (889)
.++-......+ |... .....+-|..++..++|.+|...|-.+..-.
T Consensus 97 ~ka~~~~~~~~d~~~~-------------------------nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 97 EKAESLIEKGGDWERR-------------------------NRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHhccchHHHH-------------------------HHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 87755433211 1000 0122345666777889999998887776444
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.8 Score=46.51 Aligned_cols=84 Identities=14% Similarity=0.010 Sum_probs=54.9
Q ss_pred ccCHHHHHHHHHHHH------cCCC--CHHHHHHHHHHHHhcccHH-------HHHHHHHHHHHhCCCCcchhhhHHHHH
Q 002716 492 KQNVEAALAEINRIL------GFKL--ALECLELRFCFFLALEDYQ-------AALCDVQAILTLSPDYRMFEGRVAASQ 556 (889)
Q Consensus 492 ~g~~~~Al~~l~kal------~~~p--~~~~l~~~a~~~~~~g~~~-------~A~~~~~~al~~~p~~~~~~~~~~a~~ 556 (889)
...+++|++.|.-++ +.++ .+.....+||+|...|+.+ .|...|++++................+
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 344555655555443 2223 3455666789998888844 455666666655433222333446889
Q ss_pred HHHHHHHHhhchhHHHHHH
Q 002716 557 LHMLVREHIDNWTIADCWL 575 (889)
Q Consensus 557 ~lg~~~~~~~~~~~A~~~~ 575 (889)
++|.++.+.|++++|.+||
T Consensus 170 LigeL~rrlg~~~eA~~~f 188 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWF 188 (214)
T ss_pred HHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999999
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.87 E-value=11 Score=40.28 Aligned_cols=115 Identities=16% Similarity=0.115 Sum_probs=71.2
Q ss_pred HHHHHHHHHhhhHHHhcc-cHHHHHHHHHHHHHc----Ccch-hHhhHHHHHhhcCCcHHHHHHHhhhhhccCcchhHHH
Q 002716 380 RQRLLAFHQLGCVRLLRK-EYDEAEHLFEAAVNA----GHIY-SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQ 453 (889)
Q Consensus 380 ~~~~~a~~~lG~~~~~~g-~~~eA~~~~~~al~~----~~~~-~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~ 453 (889)
...+..+|+.|...+.++ ++++|..|+++|.+. +... ....... .-+..+. .++.+|.
T Consensus 32 ~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e---------lr~~iL~-------~La~~~l 95 (278)
T PF08631_consen 32 EELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE---------LRLSILR-------LLANAYL 95 (278)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH---------HHHHHHH-------HHHHHHH
Confidence 344567899999999999 999999999999875 2110 0000000 0000011 1112222
Q ss_pred HHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC
Q 002716 454 ERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL 510 (889)
Q Consensus 454 ~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p 510 (889)
..+.+...++|...++.+-...|+.+..+...-.++...++.+++.+.+.+++...+
T Consensus 96 ~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 96 EWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred cCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 222221225677777777777888888776666666668889999999988887654
|
It is also involved in sporulation []. |
| >PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.17 Score=53.38 Aligned_cols=118 Identities=20% Similarity=0.204 Sum_probs=80.1
Q ss_pred eEEEehHHHHhhcChhhhhhhcCCCCCCC-cCceEecCCCCCHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHHcHHH
Q 002716 191 EKIECDRQKFAALSAPFSAMLNGSFMESL-CEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCER 269 (889)
Q Consensus 191 ~~~~~hr~vLaa~s~~F~~mf~~~~~e~~-~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~ll~~A~~~~~~~ 269 (889)
+.|.|.+-.|-..=.||+..+.....++. .+.|+|+- .-+..+|.-|+.|+....-. +++.+|..||.-++++-|+.
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisV-hCDv~iF~WLm~yv~~~~p~-l~~~NvvsIliSS~FL~M~~ 91 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISV-HCDVHIFEWLMRYVKGEPPS-LTPSNVVSILISSEFLQMES 91 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEE-ecChhHHHHHHHHhhcCCCc-CCcCcEEEeEehhhhhccHH
Confidence 57999999999999999999976332222 24555553 26889999999999986666 99999999999999996666
Q ss_pred HHHHHHHHH--------Hhhc--CCHHHHHHHHHHHHHcCChhhHHHHHHHH
Q 002716 270 LKDACDRKL--------ASLV--ASREDAVELMGYAIEENSPVLAVSCLQVF 311 (889)
Q Consensus 270 l~~~~~~~l--------~~~~--~~~~~~~~~~~~a~~~~~~~l~~~c~~~~ 311 (889)
|.+.|-.++ .+.+ .++.+ -.+..+|...+..+|..+-+...
T Consensus 92 Lve~cl~y~~~~~~~Iv~~~~nl~Cl~~-~Ll~RLa~~~t~~el~~~~l~l~ 142 (317)
T PF11822_consen 92 LVEECLQYCHDHMSEIVASPCNLNCLND-NLLTRLADMFTHEELEAAFLRLK 142 (317)
T ss_pred HHHHHHHHHHHhHHHHHcCCCCcccCCH-HHHHHHHHhcCcccHhHhhhhhc
Confidence 666554443 2222 11111 12334566666666665444333
|
This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.84 E-value=14 Score=41.73 Aligned_cols=91 Identities=18% Similarity=0.112 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--hHHHHHHH-HHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhc--
Q 002716 713 QALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLAR-VHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEY-- 787 (889)
Q Consensus 713 ~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-- 787 (889)
.+|.++-+.-.+..-.+.|...|.+|-+.... ..+..-|. -|...++..-|.+.++-.+...++.+..-.....|
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~ 446 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLS 446 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 34555555555566666777777777655433 22222222 23445666666666666666666555444333332
Q ss_pred --CCHHHHHHHHHHHHhc
Q 002716 788 --CDRELTRADLEMVTQL 803 (889)
Q Consensus 788 --~~~~~A~~~l~~al~l 803 (889)
++...|...|++++..
T Consensus 447 ~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 447 HLNDDNNARALFERVLTS 464 (656)
T ss_pred HhCcchhHHHHHHHHHhc
Confidence 4445555555555443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.66 E-value=2.4 Score=40.50 Aligned_cols=111 Identities=10% Similarity=-0.017 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc------hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHH
Q 002716 712 GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT------RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS 785 (889)
Q Consensus 712 ~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~------~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 785 (889)
..+....|.+..+.|+...|+..|..+-.-.|. .+...-+.++...|-|+.-....+.+
T Consensus 94 vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepL--------------- 158 (221)
T COG4649 94 VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPL--------------- 158 (221)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhc---------------
Confidence 456677778888888888888888877665543 33444455556666664332222211
Q ss_pred hcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 002716 786 EYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLRAAFH 851 (889)
Q Consensus 786 ~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~l~l~a~~~ 851 (889)
+...+|-...+...||..-.+.|++.+|.+.|.....-...+.....++.+.
T Consensus 159 --------------a~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprnirqRAq~m 210 (221)
T COG4649 159 --------------AGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRNIRQRAQIM 210 (221)
T ss_pred --------------cCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHHHHHHHHHH
Confidence 1223455566777788888888888888888888776433344444444443
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=93.55 E-value=5.1 Score=43.67 Aligned_cols=84 Identities=13% Similarity=-0.031 Sum_probs=67.6
Q ss_pred HHHHHHHhhhcCCCChhhHHHHHHHHHhcc------------CHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHH
Q 002716 464 RWEDLDKATALDPTLSYPYMYRASSLMTKQ------------NVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQA 530 (889)
Q Consensus 464 A~~~~~~al~~dp~~~~a~~~la~~~~~~g------------~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~ 530 (889)
....|++.++.+|.+..+|..+...--..- -.+..+..|++|++.+| +...+..+-.......+-++
T Consensus 4 r~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~ 83 (321)
T PF08424_consen 4 RTAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEK 83 (321)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHH
Confidence 456688999999999999998875543321 24667889999999999 77777777777778888899
Q ss_pred HHHHHHHHHHhCCCCcc
Q 002716 531 ALCDVQAILTLSPDYRM 547 (889)
Q Consensus 531 A~~~~~~al~~~p~~~~ 547 (889)
..+-+++++..+|++..
T Consensus 84 l~~~we~~l~~~~~~~~ 100 (321)
T PF08424_consen 84 LAKKWEELLFKNPGSPE 100 (321)
T ss_pred HHHHHHHHHHHCCCChH
Confidence 99999999999999883
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.49 Score=41.97 Aligned_cols=101 Identities=20% Similarity=0.154 Sum_probs=65.5
Q ss_pred HHHHHHh--hhHHHhcccHHHHHHHHHHHHHcCc--------------chhHhhHHHHHhhcCCcHHHHHHHhhhhhccC
Q 002716 383 LLAFHQL--GCVRLLRKEYDEAEHLFEAAVNAGH--------------IYSIAGLARLGYIKGHKLWAYEKLNSVISSVT 446 (889)
Q Consensus 383 ~~a~~~l--G~~~~~~g~~~eA~~~~~~al~~~~--------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 446 (889)
+.+|..| |.-.+..|-|++|...+.+|++... ...+.+|+.++...|.++.++...
T Consensus 7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA-------- 78 (144)
T PF12968_consen 7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSA-------- 78 (144)
T ss_dssp HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHH--------
Confidence 3344444 4456788999999999999987521 124667888888888888876544
Q ss_pred cchhHHHHHhhcCChhHHHHHHHHhhhcCCCChh----hHHHHHHHHHhccCHHHHHHHHHHHH
Q 002716 447 PLGWMYQERSLYCEGDKRWEDLDKATALDPTLSY----PYMYRASSLMTKQNVEAALAEINRIL 506 (889)
Q Consensus 447 ~~g~~~~~~~~~~~~~~A~~~~~~al~~dp~~~~----a~~~la~~~~~~g~~~~Al~~l~kal 506 (889)
+.|+.+|++--+++.+... +-+.+|..+-..|+.++|+..|+.+-
T Consensus 79 ---------------~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 79 ---------------DRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp ---------------HHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ---------------HHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 4444455554444444332 34577888888999999998888764
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.55 Score=49.31 Aligned_cols=76 Identities=13% Similarity=0.063 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Q 002716 554 ASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 633 (889)
Q Consensus 554 a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 633 (889)
.+.++-.++...++++.|.... +.++...|+++.-+.-.|.+|.++|++..|...++..++.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~------------------e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRAS------------------EALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHH------------------HHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 4556667788888888885555 8888888888888888888888888888888888888888
Q ss_pred CCCcHHHHHHHHHH
Q 002716 634 AASDHERLVYEGWI 647 (889)
Q Consensus 634 ~p~~~~~~~~lg~~ 647 (889)
.|+++.+......+
T Consensus 245 ~P~dp~a~~ik~ql 258 (269)
T PRK10941 245 CPEDPISEMIRAQI 258 (269)
T ss_pred CCCchhHHHHHHHH
Confidence 88887765544433
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=93.18 E-value=3.1 Score=46.01 Aligned_cols=36 Identities=14% Similarity=-0.017 Sum_probs=32.3
Q ss_pred HHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 002716 504 RILGFKL-ALECLELRFCFFLALEDYQAALCDVQAIL 539 (889)
Q Consensus 504 kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al 539 (889)
..++..| ..+++..++.++..+|+.+.|.+.++++|
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRAL 67 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERAL 67 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3456789 99999999999999999999999999987
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=93.05 E-value=1 Score=45.72 Aligned_cols=97 Identities=18% Similarity=0.209 Sum_probs=65.6
Q ss_pred hCCHHHHHHHHHHHHHc----C-C--CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCC
Q 002716 617 LNCPEAAMRSLQLARQH----A-A--SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSS 689 (889)
Q Consensus 617 ~g~~~~A~~~l~~al~~----~-p--~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~ 689 (889)
...+++|+..|..|+-. . + .-+..+..+||+|...|+.+.....+++|+.
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~----------------------- 146 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALE----------------------- 146 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHH-----------------------
Confidence 44566777776665532 1 1 1245678899999999998888877777762
Q ss_pred cchhhhhhHHHHhcchhh---hCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCc
Q 002716 690 CSSTVVSLLEDALKCPSD---RLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH 743 (889)
Q Consensus 690 ~~~~~~~~~~~Al~~~~~---~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p 743 (889)
.+++|...-.. ........+.+|.++.+.|++++|..+|.+++....
T Consensus 147 -------~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 147 -------FYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred -------HHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 12222211111 122346788899999999999999999999987643
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.97 E-value=5.5 Score=45.60 Aligned_cols=42 Identities=7% Similarity=0.108 Sum_probs=25.2
Q ss_pred hHHHHhcchhhhCch-hHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002716 697 LLEDALKCPSDRLRK-GQALNNLGSVYVDCGQLDLAADCYSNA 738 (889)
Q Consensus 697 ~~~~Al~~~~~~~~~-~~~~~~Lg~~y~~~g~~~~A~~~~~~a 738 (889)
.+.+|....++.+.. ..+|+..|..+....++++|.+.|.+|
T Consensus 788 ~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 788 RWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred cchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 555665555555433 456666666666666777766665544
|
|
| >KOG0511 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.11 Score=54.77 Aligned_cols=89 Identities=11% Similarity=0.047 Sum_probs=66.0
Q ss_pred ccEEEEe-CCeEEEehHHHHhhcChhhhhhhcCCCCCCCcCceEecCCCCCHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 002716 182 RNVVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILI 260 (889)
Q Consensus 182 ~Dv~~~v-~~~~~~~hr~vLaa~s~~F~~mf~~~~~e~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~ll~ 260 (889)
.|++|.+ +|+.|.|||..|+++|.+|..-+..-+ -...+|+-.. +-+.+|..++.|+|-+.=. +-++.-..|+.
T Consensus 150 ~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~--~~~heI~~~~--v~~~~f~~flk~lyl~~na-~~~~qynalls 224 (516)
T KOG0511|consen 150 HDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFY--VQGHEIEAHR--VILSAFSPFLKQLYLNTNA-EWKDQYNALLS 224 (516)
T ss_pred cchHHHhhccccccHHHHHHHhhhcccCchhhhhc--cccCchhhhh--hhHhhhhHHHHHHHHhhhh-hhhhHHHHHHh
Confidence 5999988 888999999999999998765443322 2334553332 8899999999999977444 55666789999
Q ss_pred HHHHHcHHHHHHHHH
Q 002716 261 FANKFCCERLKDACD 275 (889)
Q Consensus 261 ~A~~~~~~~l~~~~~ 275 (889)
...+|-.+.|...++
T Consensus 225 i~~kF~~e~l~~~~~ 239 (516)
T KOG0511|consen 225 IEVKFSKEKLSLEIS 239 (516)
T ss_pred hhhhccHHHhHHHHh
Confidence 999997666655443
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.36 Score=49.92 Aligned_cols=71 Identities=15% Similarity=0.036 Sum_probs=62.8
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHH
Q 002716 608 FRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKA 678 (889)
Q Consensus 608 ~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la 678 (889)
.+.+.-..+.|+.++|...|+.|+.+.|.+++++...|......++.-+|-.+|-+|+.++|.+ ++..+.+
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 3445556788999999999999999999999999999999999999999999999999999999 7665544
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.17 Score=35.94 Aligned_cols=30 Identities=27% Similarity=0.328 Sum_probs=26.0
Q ss_pred HHHHHHhhhHHHhcccHHHHHHHHHHHHHc
Q 002716 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNA 412 (889)
Q Consensus 383 ~~a~~~lG~~~~~~g~~~eA~~~~~~al~~ 412 (889)
+.++.+||.+|..+|++++|+.+++++++.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 357889999999999999999999999874
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=92.76 E-value=2.5 Score=37.42 Aligned_cols=106 Identities=9% Similarity=0.038 Sum_probs=63.4
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHH
Q 002716 518 RFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQML 597 (889)
Q Consensus 518 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al 597 (889)
++.-++..||+-+|+++.+..+...+++...+. .+..-|.++.. .+-
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~---lh~~QG~if~~------------------------------lA~ 48 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWL---LHRLQGTIFYK------------------------------LAK 48 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHH---HHHHHhHHHHH------------------------------HHH
Confidence 356678888888888888888888777762110 12222333222 122
Q ss_pred hcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002716 598 ESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (889)
Q Consensus 598 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 667 (889)
..+..+....+. -.+++.+.++....|..+..++.+|.-+-....|+++....++++.+
T Consensus 49 ~ten~d~k~~yL-----------l~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 49 KTENPDVKFRYL-----------LGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hccCchHHHHHH-----------HHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 222112222222 23567777777888877777777777666666677777777777654
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.64 E-value=9 Score=36.79 Aligned_cols=121 Identities=14% Similarity=0.074 Sum_probs=84.1
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-----HHHHHHHHHH
Q 002716 609 RQSLLLLRLNCPEAAMRSLQLARQHAASD--HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-----EAFFLKAYAL 681 (889)
Q Consensus 609 ~la~~~~~~g~~~~A~~~l~~al~~~p~~--~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-----~a~~~la~~~ 681 (889)
.-+.-+...|+.++|+..|...-+..-.. .-+.+..|.+..+.|+...|+..|.++-...|.. -+...-+.++
T Consensus 63 laAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lL 142 (221)
T COG4649 63 LAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLL 142 (221)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHH
Confidence 34445667888999999998877765443 3456788999999999999999999987655432 4455566677
Q ss_pred HHcCCCCCcchhhhhhHHHHhcchhhh-----CchhHHHHHHHHHHHHcCChHHHHHHHHHHHc
Q 002716 682 ADSSQDSSCSSTVVSLLEDALKCPSDR-----LRKGQALNNLGSVYVDCGQLDLAADCYSNALK 740 (889)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~Al~~~~~~-----~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~ 740 (889)
.+.| -+++.....+.. +....+.-.||..-.+.|++.+|.++|.+...
T Consensus 143 vD~g-----------sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 143 VDNG-----------SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hccc-----------cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 7777 444433333332 12245566778888888888888888887765
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.2 Score=32.51 Aligned_cols=31 Identities=39% Similarity=0.659 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCc
Q 002716 713 QALNNLGSVYVDCGQLDLAADCYSNALKIRH 743 (889)
Q Consensus 713 ~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p 743 (889)
.++..+|.++...|++++|+.+|+++++..|
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 4567788888888888888888888877665
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.39 E-value=0.41 Score=51.81 Aligned_cols=85 Identities=21% Similarity=0.208 Sum_probs=64.9
Q ss_pred EEEEeCCeEEEehHHHHhhcC--hhhhhhhcCCCCCCCcCc--eEecCCCCCHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 002716 184 VVFRIHEEKIECDRQKFAALS--APFSAMLNGSFMESLCED--IDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEIL 259 (889)
Q Consensus 184 v~~~v~~~~~~~hr~vLaa~s--~~F~~mf~~~~~e~~~~~--i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~ll 259 (889)
|.|-|||+.|.-.+.-|+-.. .+|-++|++.|.-...+. |-|. =+|+.|..+|+|+.||.|+ ++.-....+|
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFID---RDPdlFaviLn~LRTg~L~-~~g~~~~~ll 88 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFID---RDPDLFAVILNLLRTGDLD-ASGVFPERLL 88 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEec---CCchHHHHHHHHHhcCCCC-CccCchhhhh
Confidence 668899999999999996655 589999988775333333 5555 6899999999999999999 7655555555
Q ss_pred H-HHHHHcHHHHHH
Q 002716 260 I-FANKFCCERLKD 272 (889)
Q Consensus 260 ~-~A~~~~~~~l~~ 272 (889)
. =|.+|.++-|..
T Consensus 89 hdEA~fYGl~~llr 102 (465)
T KOG2714|consen 89 HDEAMFYGLTPLLR 102 (465)
T ss_pred hhhhhhcCcHHHHH
Confidence 5 788886665544
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.37 E-value=1.7 Score=41.41 Aligned_cols=106 Identities=15% Similarity=-0.022 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Q 002716 554 ASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 633 (889)
Q Consensus 554 a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 633 (889)
++..+..+-...++.+++...+ ..+--+.|+.+.+-..-|.++...|++.+|++.|+.+...
T Consensus 12 gLie~~~~al~~~~~~D~e~lL------------------~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALL------------------DALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHH------------------HHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 3444445555566666665554 5555577888888888888999999999999999988888
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHH
Q 002716 634 AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKA 678 (889)
Q Consensus 634 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la 678 (889)
.|..+..--.++.+++..|+.+ =..+..+++...++..+.....
T Consensus 74 ~~~~p~~kALlA~CL~~~~D~~-Wr~~A~evle~~~d~~a~~Lv~ 117 (160)
T PF09613_consen 74 APGFPYAKALLALCLYALGDPS-WRRYADEVLESGADPDARALVR 117 (160)
T ss_pred CCCChHHHHHHHHHHHHcCChH-HHHHHHHHHhcCCChHHHHHHH
Confidence 8888888888888888888754 2222344555554443333333
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=92.30 E-value=1.8 Score=38.29 Aligned_cols=43 Identities=12% Similarity=0.071 Sum_probs=21.6
Q ss_pred HHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 002716 498 ALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILT 540 (889)
Q Consensus 498 Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~ 540 (889)
+++.+.++..+.| .+..++.+|.-+-....|+++..-.+++|.
T Consensus 63 sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 63 SVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred hHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 4455555555555 444444444444444445555555555443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.25 E-value=5.7 Score=37.90 Aligned_cols=80 Identities=23% Similarity=0.200 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHc
Q 002716 606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADS 684 (889)
Q Consensus 606 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~ 684 (889)
.+.....+-...++.+.+...+....-+.|+.++....-|+++...|++.+|+..++.+..-.|.. -+.-+++.++...
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence 445566677788899999999999999999999999999999999999999999999988877777 5566677777666
Q ss_pred C
Q 002716 685 S 685 (889)
Q Consensus 685 ~ 685 (889)
+
T Consensus 92 ~ 92 (160)
T PF09613_consen 92 G 92 (160)
T ss_pred C
Confidence 5
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=92.16 E-value=39 Score=42.13 Aligned_cols=130 Identities=19% Similarity=0.099 Sum_probs=81.9
Q ss_pred HHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHh-------hchhHHHHHHHhhhhcccccccchHHH
Q 002716 520 CFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHI-------DNWTIADCWLQLYDRWSSVDDIGSLSV 592 (889)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~-------~~~~~A~~~~~l~~~~~~~dd~~sl~~ 592 (889)
..+++...|+.|+..|+++-.-.|+...-+ +|...+|...... ..+++|+.-|
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 542 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESFPGRKEGY---EAQFRLGITLLEKASEQGDPRDFTQALSEF----------------- 542 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcCCCcccch---HHHHHhhHHHHHHHHhcCChHHHHHHHHHH-----------------
Confidence 345566777778888887777777655222 3555555443321 1344553333
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhc
Q 002716 593 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDT-----SHCEEGLRKAEESIQM 667 (889)
Q Consensus 593 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~-----g~~~eA~~~~~~al~~ 667 (889)
+ -+...|..|.-|...|.+|.++|++++-+++|..|++..|+.|+.-...-.+-++. .+...|....--++..
T Consensus 543 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (932)
T PRK13184 543 -S-YLHGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWI 620 (932)
T ss_pred -H-HhcCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 24456888888999999999999999999999999999998876543332222221 2334455555555666
Q ss_pred CCCh
Q 002716 668 KRSF 671 (889)
Q Consensus 668 ~p~~ 671 (889)
.|..
T Consensus 621 ~~~~ 624 (932)
T PRK13184 621 APEK 624 (932)
T ss_pred Cccc
Confidence 6654
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=91.85 E-value=1.4 Score=39.21 Aligned_cols=101 Identities=18% Similarity=0.142 Sum_probs=67.6
Q ss_pred HHHHHHHHH--HHHcCChHHHHHHHHHHHccCcc--------------hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc
Q 002716 713 QALNNLGSV--YVDCGQLDLAADCYSNALKIRHT--------------RAHQGLARVHFLKNNKTTAYEEMTKLIKKARN 776 (889)
Q Consensus 713 ~~~~~Lg~~--y~~~g~~~~A~~~~~~al~~~p~--------------~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~ 776 (889)
.+|..|+.. ...-|-|++|..-+++|.+...+ ..+..|+..+...|+|++++....+++.
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~---- 83 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALR---- 83 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH----
Confidence 344444433 45568999999999999976532 4677799999999999999887666653
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCh----HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 002716 777 NASAYEKRSEYCDRELTRADLEMVTQLDPLRV----YPYRYRAAVLMDSHKENEAIAELSRAIA 836 (889)
Q Consensus 777 ~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~----~~~~~la~~~~~~g~~~eA~~~l~kal~ 836 (889)
+|++-=+++.+.. .+.+.+|..+...|+.++|+..|+++-+
T Consensus 84 -------------------YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 84 -------------------YFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp -------------------HHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred -------------------HHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 2332223333222 2445678888899999999999988764
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=91.78 E-value=0.27 Score=31.86 Aligned_cols=31 Identities=32% Similarity=0.333 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q 002716 514 CLELRFCFFLALEDYQAALCDVQAILTLSPD 544 (889)
Q Consensus 514 ~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 544 (889)
++..+|.++..+|++++|+..++++++.+|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3445555566666666666666666555553
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.34 E-value=14 Score=39.05 Aligned_cols=141 Identities=11% Similarity=-0.028 Sum_probs=80.0
Q ss_pred cCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHH
Q 002716 599 SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKA 678 (889)
Q Consensus 599 ~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la 678 (889)
-+.+....-+.+-....+..+..+-++....+++++|.-+.++..++.-- .--..+|.+.++++++..... +...
T Consensus 179 Cd~D~~r~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~---yr~s 253 (556)
T KOG3807|consen 179 CDTDFLRPEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETI---YRQS 253 (556)
T ss_pred ccccccChHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHH---HhhH
Confidence 34444445556666677777888888888888888888887777766432 234567788888877543221 1111
Q ss_pred HHHHHcCCCCCcchhhhhhHHHHhcchhhhCch-hHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc----hHHHHHHHH
Q 002716 679 YALADSSQDSSCSSTVVSLLEDALKCPSDRLRK-GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT----RAHQGLARV 753 (889)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~-~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~----~a~~~La~~ 753 (889)
......+ ...+| ..++...- ...-..|+.+..+.|+..+|++.|+...+..|- ..+.+|-..
T Consensus 254 qq~qh~~-----------~~~da--~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEa 320 (556)
T KOG3807|consen 254 QQCQHQS-----------PQHEA--QLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEA 320 (556)
T ss_pred HHHhhhc-----------cchhh--hhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHH
Confidence 1111111 00000 00000100 233456778888888888888888887777665 344444444
Q ss_pred HHHc
Q 002716 754 HFLK 757 (889)
Q Consensus 754 ~~~~ 757 (889)
....
T Consensus 321 lLE~ 324 (556)
T KOG3807|consen 321 LLEL 324 (556)
T ss_pred HHHH
Confidence 4443
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.27 E-value=0.63 Score=48.16 Aligned_cols=68 Identities=12% Similarity=-0.040 Sum_probs=62.1
Q ss_pred HHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHH
Q 002716 562 REHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERL 641 (889)
Q Consensus 562 ~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~ 641 (889)
....|+.++|...| +.++.++|.++.++...|......++.-+|-.+|-+|+.++|.+.+++
T Consensus 126 ~~~~Gk~ekA~~lf------------------eHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseAL 187 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLF------------------EHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEAL 187 (472)
T ss_pred HHhccchHHHHHHH------------------HHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHH
Confidence 35678999998888 999999999999999999999999999999999999999999999998
Q ss_pred HHHHHH
Q 002716 642 VYEGWI 647 (889)
Q Consensus 642 ~~lg~~ 647 (889)
.+.+..
T Consensus 188 vnR~RT 193 (472)
T KOG3824|consen 188 VNRART 193 (472)
T ss_pred hhhhcc
Confidence 887653
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.03 E-value=2.3 Score=41.78 Aligned_cols=94 Identities=10% Similarity=-0.023 Sum_probs=71.7
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC--CCcchhhhHH
Q 002716 480 YPYMYRASSLMTKQNVEAALAEINRILGFKL----ALECLELRFCFFLALEDYQAALCDVQAILTLSP--DYRMFEGRVA 553 (889)
Q Consensus 480 ~a~~~la~~~~~~g~~~~Al~~l~kal~~~p----~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~ 553 (889)
.++..+|..|.+.|+.++|++.|.++..... ..+.......+.+..+++........++-..-. .+..... .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~n--r 114 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRN--R 114 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHH--H
Confidence 4678999999999999999999999887654 456667778888899999999999988876533 2332222 2
Q ss_pred HHHHHHHHHHHhhchhHHHHHH
Q 002716 554 ASQLHMLVREHIDNWTIADCWL 575 (889)
Q Consensus 554 a~~~lg~~~~~~~~~~~A~~~~ 575 (889)
....-|..+...++|..|-+.|
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~f 136 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELF 136 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHH
Confidence 3334567777789999997777
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.90 E-value=8.2 Score=43.92 Aligned_cols=127 Identities=16% Similarity=0.116 Sum_probs=77.9
Q ss_pred HHHhCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcch
Q 002716 614 LLRLNCPEAAMRSLQLARQHAASD-HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSS 692 (889)
Q Consensus 614 ~~~~g~~~~A~~~l~~al~~~p~~-~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~ 692 (889)
....|+++++.+..+.. +.-|.- ..-...++..+.++|.++.|++.-+ +....+.++. +.|
T Consensus 271 av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~-------D~~~rFeLAl---~lg------- 332 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFVT-------DPDHRFELAL---QLG------- 332 (443)
T ss_dssp HHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS--------HHHHHHHHH---HCT-------
T ss_pred HHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhcC-------ChHHHhHHHH---hcC-------
Confidence 34578888877776522 222322 3335566777788888888876432 2234444443 456
Q ss_pred hhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcchHHHHHHHHHHHcCCHHHHHHHHHH
Q 002716 693 TVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTK 769 (889)
Q Consensus 693 ~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~~a~~~La~~~~~~g~~~~A~~~~~~ 769 (889)
+++.|.++..+... ...|..||.....+|+++-|..+|+++-+ +..|..+|...|+.+.=.++...
T Consensus 333 ----~L~~A~~~a~~~~~-~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d------~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 333 ----NLDIALEIAKELDD-PEKWKQLGDEALRQGNIELAEECYQKAKD------FSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp -----HHHHHHHCCCCST-HHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred ----CHHHHHHHHHhcCc-HHHHHHHHHHHHHcCCHHHHHHHHHhhcC------ccccHHHHHHhCCHHHHHHHHHH
Confidence 78888877766543 35899999999999999999999998853 56678888888987444444433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.71 E-value=26 Score=37.41 Aligned_cols=265 Identities=14% Similarity=0.071 Sum_probs=150.9
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHc--CCCc--------HHHHHHHHHHHHhcCCHHHHHHHHHHHH---hcCCCh-HH
Q 002716 608 FRQSLLLLRLNCPEAAMRSLQLARQH--AASD--------HERLVYEGWILYDTSHCEEGLRKAEESI---QMKRSF-EA 673 (889)
Q Consensus 608 ~~la~~~~~~g~~~~A~~~l~~al~~--~p~~--------~~~~~~lg~~~~~~g~~~eA~~~~~~al---~~~p~~-~a 673 (889)
...+......++.++++..|.+.+.. .|.+ ......+|.+|.+.|+.++-.......- ..-+.. .+
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kakaa 87 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAA 87 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHH
Confidence 44555666777788888888888874 2221 2356789999999999876555444322 111111 11
Q ss_pred HHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCch---hHHHHHHHHHHHHcCChHHHHHHHHHHHcc----Ccc--
Q 002716 674 FFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK---GQALNNLGSVYVDCGQLDLAADCYSNALKI----RHT-- 744 (889)
Q Consensus 674 ~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~---~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~----~p~-- 744 (889)
......+-.-.. .+......+....+.+++..+.-+. ...-..+...|.+.++|.+|+......+.. +..
T Consensus 88 KlvR~Lvd~~~~-~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~l 166 (411)
T KOG1463|consen 88 KLVRSLVDMFLK-IDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKIL 166 (411)
T ss_pred HHHHHHHHHHcc-CCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccc
Confidence 111111111111 1222334444555555555444222 334567888999999999999887766542 222
Q ss_pred --hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc-----cCH--HHHHHHHhc----CCHHHHHHHHHHHHhcCC------
Q 002716 745 --RAHQGLARVHFLKNNKTTAYEEMTKLIKKAR-----NNA--SAYEKRSEY----CDRELTRADLEMVTQLDP------ 805 (889)
Q Consensus 745 --~a~~~La~~~~~~g~~~~A~~~~~~al~~~~-----~~~--~~~~~~~~~----~~~~~A~~~l~~al~l~p------ 805 (889)
+.+..=..+|+...+..+|...++.+-...- +.. .+-..-|.+ .++.-|..+|-.|++--.
T Consensus 167 Lvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v 246 (411)
T KOG1463|consen 167 LVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDV 246 (411)
T ss_pred eeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcH
Confidence 5666667888888999888888877644322 111 111111111 477888888888876421
Q ss_pred CChHHHHHHHHHHHhCCCHHHHHHHH--HHHHhcC-CCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHccCCC
Q 002716 806 LRVYPYRYRAAVLMDSHKENEAIAEL--SRAIAFK-ADLHLLHLRAAFHE--HTGDVLGALRDCRAALSVDPN 873 (889)
Q Consensus 806 ~~~~~~~~la~~~~~~g~~~eA~~~l--~kal~~~-p~~~~l~l~a~~~~--~~g~~~~A~~~~~~al~l~P~ 873 (889)
.-...+.++-.+-...+..++--..+ +.+++.. |+...+...+..+. .+.+++.|+..|+.=+..||-
T Consensus 247 ~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 247 KALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence 11223334433444455555543333 4445533 33445544444443 347899999999998888874
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=90.41 E-value=0.43 Score=33.82 Aligned_cols=29 Identities=38% Similarity=0.528 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHcc
Q 002716 713 QALNNLGSVYVDCGQLDLAADCYSNALKI 741 (889)
Q Consensus 713 ~~~~~Lg~~y~~~g~~~~A~~~~~~al~~ 741 (889)
.+++++|.+|...|++++|..++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 35666777777777777777777666654
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=90.26 E-value=2.1 Score=47.09 Aligned_cols=122 Identities=12% Similarity=0.056 Sum_probs=66.2
Q ss_pred hccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchh
Q 002716 491 TKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWT 569 (889)
Q Consensus 491 ~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~ 569 (889)
..|+...|-..+..++...| .+....+++.+...+|+|+.|...+..+-..-..-. .+...+-......|+|+
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~------~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTD------STLRCRLRSLHGLARWR 374 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCc------hHHHHHHHhhhchhhHH
Confidence 34555566666666666666 566666666666666666666665544433222111 23444444555566666
Q ss_pred HHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC
Q 002716 570 IADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS 636 (889)
Q Consensus 570 ~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 636 (889)
+|.... .-++...-+.+++..--+.....+|-+++|..+.++.+.++|.
T Consensus 375 ~a~s~a------------------~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 375 EALSTA------------------EMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHH------------------HHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 664333 4444444444444444444445556666666666666666553
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.16 E-value=10 Score=42.89 Aligned_cols=244 Identities=12% Similarity=0.047 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHH
Q 002716 496 EAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCW 574 (889)
Q Consensus 496 ~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~ 574 (889)
+...+.+.+.....| ++-++...+..+...|+.+.|+..++..+. +... ....-.+.-++.++..+.+|..|-..
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~k--Q~~~l~~fE~aw~~v~~~~~~~aad~ 325 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMK--QVKSLMVFERAWLSVGQHQYSRAADS 325 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHH--HHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 444455555556677 788888889999999998888888887776 2222 11113455667777788888888555
Q ss_pred HHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHH-HHHHH--------hCCHHHHHHHHHHH---HHcCCCcHHHHH
Q 002716 575 LQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQS-LLLLR--------LNCPEAAMRSLQLA---RQHAASDHERLV 642 (889)
Q Consensus 575 ~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la-~~~~~--------~g~~~~A~~~l~~a---l~~~p~~~~~~~ 642 (889)
+ ......+....-.|..++ -+++. .|+-+.|..+++.. +...|.+...-.
T Consensus 326 ~------------------~~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~ 387 (546)
T KOG3783|consen 326 F------------------DLLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEK 387 (546)
T ss_pred H------------------HHHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhH
Confidence 5 333333333323333332 33322 23444443333322 222222111100
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCh--H-HHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhh-Cch-hHHHHH
Q 002716 643 YEGWILYDTSHCEEGLRKAEESIQMKRSF--E-AFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR-LRK-GQALNN 717 (889)
Q Consensus 643 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~--~-a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~-~~~-~~~~~~ 717 (889)
. -..++.+.-.+. .+++.. . .++.+++++..-. . .+.......+......... ... .--+..
T Consensus 388 f---------~~RKverf~~~~-~~~~~~~la~P~~El~Y~Wngf~--~-~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL 454 (546)
T KOG3783|consen 388 F---------IVRKVERFVKRG-PLNASILLASPYYELAYFWNGFS--R-MSKNELEKMRAELENPKIDDSDDEGLKYLL 454 (546)
T ss_pred H---------HHHHHHHHhccc-cccccccccchHHHHHHHHhhcc--c-CChhhHHHHHHHHhccCCCCchHHHHHHHH
Confidence 0 001111111110 011111 1 1233333332211 1 1111111122222222221 111 445677
Q ss_pred HHHHHHHcCChHHHHHHHHHHHccC----c-----chHHHHHHHHHHHcCC-HHHHHHHHHHHHHHh
Q 002716 718 LGSVYVDCGQLDLAADCYSNALKIR----H-----TRAHQGLARVHFLKNN-KTTAYEEMTKLIKKA 774 (889)
Q Consensus 718 Lg~~y~~~g~~~~A~~~~~~al~~~----p-----~~a~~~La~~~~~~g~-~~~A~~~~~~al~~~ 774 (889)
+|.+....|+-..|..+|...++.. . ..+++.+|.++..+|. .+++.+++.++-+..
T Consensus 455 ~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 455 KGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 8999999999999999999887431 1 1789999999999998 888888888776554
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.15 E-value=11 Score=42.84 Aligned_cols=149 Identities=13% Similarity=0.079 Sum_probs=100.3
Q ss_pred cCChHHHHHHHHHHHccCcc--------------hHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----c----------
Q 002716 725 CGQLDLAADCYSNALKIRHT--------------RAHQGLARVHFLKNNKTTAYEEMTKLIKKA-----R---------- 775 (889)
Q Consensus 725 ~g~~~~A~~~~~~al~~~p~--------------~a~~~La~~~~~~g~~~~A~~~~~~al~~~-----~---------- 775 (889)
..-|++|...|.-|....+. ..+..++.+...+|+.+-|....++++-.. |
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 45567777777777655322 677888899999999988888888876332 1
Q ss_pred ------cCHHHHHHHHhc-------CCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHH-hCCCHHHHHHHHHHH-----H
Q 002716 776 ------NNASAYEKRSEY-------CDRELTRADLEMVTQLDPL-RVYPYRYRAAVLM-DSHKENEAIAELSRA-----I 835 (889)
Q Consensus 776 ------~~~~~~~~~~~~-------~~~~~A~~~l~~al~l~p~-~~~~~~~la~~~~-~~g~~~eA~~~l~ka-----l 835 (889)
.|-..|..+-.| |=+..|.+..+..+.++|. ++.+...+-++|. +..+|.=-|..++.. +
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l 410 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKL 410 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccH
Confidence 223333333332 6778999999999999998 8887777666554 344554444444433 2
Q ss_pred hcCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHccCCC
Q 002716 836 AFKADLHLLHLRAAFHEHTGD---VLGALRDCRAALSVDPN 873 (889)
Q Consensus 836 ~~~p~~~~l~l~a~~~~~~g~---~~~A~~~~~~al~l~P~ 873 (889)
..-|+...-..++.+|....+ .+.|...+.+|+...|.
T Consensus 411 ~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 411 SQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred hhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 344555444456777777544 67899999999999883
|
|
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.11 E-value=3.3 Score=47.32 Aligned_cols=101 Identities=12% Similarity=-0.029 Sum_probs=82.1
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHH
Q 002716 515 LELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 594 (889)
Q Consensus 515 l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~ 594 (889)
+...|.-.++..+|..+++.|...+..-|.+.+...-......+..+|....+.+.|.+++ +
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~------------------~ 418 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVY------------------Q 418 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHH------------------H
Confidence 4455777888999999999999999888877655544567788899999999999997666 8
Q ss_pred HHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Q 002716 595 QMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 633 (889)
Q Consensus 595 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 633 (889)
++-+.+|.++...+....+....|.-++|+.........
T Consensus 419 EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 419 EAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 888899988888888888888889999999887765543
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=90.01 E-value=9.2 Score=35.89 Aligned_cols=105 Identities=17% Similarity=0.114 Sum_probs=77.9
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCC
Q 002716 609 RQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQD 687 (889)
Q Consensus 609 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~~~~ 687 (889)
.....-...++++++...+....-+.|+.++....-|+++...|++.+|+..++....-.+.. -..-+++.++.-.+
T Consensus 15 ~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~-- 92 (153)
T TIGR02561 15 EVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG-- 92 (153)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC--
Confidence 344445558899999999999999999999999999999999999999999999988777665 55556677766665
Q ss_pred CCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002716 688 SSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNAL 739 (889)
Q Consensus 688 ~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al 739 (889)
...|...+......+...+|+...+...
T Consensus 93 ------------------------Dp~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 93 ------------------------DAEWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred ------------------------ChHHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 1245555555555666666665554443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=89.81 E-value=1.3 Score=40.42 Aligned_cols=66 Identities=23% Similarity=0.310 Sum_probs=54.5
Q ss_pred hHHHHHHHHHhcc---CHHHHHHHHHHHHc-CCC--CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCc
Q 002716 481 PYMYRASSLMTKQ---NVEAALAEINRILG-FKL--ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (889)
Q Consensus 481 a~~~la~~~~~~g---~~~~Al~~l~kal~-~~p--~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 546 (889)
..+.+|.++.... +..+.+..++.++. -.| ..++++.++.-+++.++|++++.+.+..++.+|++.
T Consensus 34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 3456666665543 56788999999996 555 788999999999999999999999999999999998
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.47 E-value=0.72 Score=45.97 Aligned_cols=60 Identities=15% Similarity=0.022 Sum_probs=51.9
Q ss_pred HHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh
Q 002716 612 LLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (889)
Q Consensus 612 ~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 671 (889)
....+.++.+.|.+.|.+++...|.....|+.+|....+.|+++.|.+.|++.++++|++
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 345567888888899999999999888889999999889999999999999999998887
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.21 E-value=6.5 Score=44.88 Aligned_cols=93 Identities=18% Similarity=0.113 Sum_probs=70.2
Q ss_pred CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHH-HHhcCCCH-HHHHH------HHHHHHHcCCHHH
Q 002716 788 CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSR-AIAFKADL-HLLHL------RAAFHEHTGDVLG 859 (889)
Q Consensus 788 ~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~k-al~~~p~~-~~l~l------~a~~~~~~g~~~~ 859 (889)
++...+...+..++..+|.+..++.++|......|....+...+.. +....|++ ..+.. .+.+...+|+..+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (620)
T COG3914 81 ADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAE 160 (620)
T ss_pred ccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHH
Confidence 5556777778888888888888888888888877777777766665 67777775 22222 4667777788888
Q ss_pred HHHHHHHHHccCCCCHHHHHH
Q 002716 860 ALRDCRAALSVDPNDQEMLEL 880 (889)
Q Consensus 860 A~~~~~~al~l~P~~~~~l~l 880 (889)
+....+++.++.|.++.++..
T Consensus 161 ~~~~l~~~~d~~p~~~~~~~~ 181 (620)
T COG3914 161 AELALERAVDLLPKYPRVLGA 181 (620)
T ss_pred HHHHHHHHHHhhhhhhhhHhH
Confidence 888999999999888777644
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=88.12 E-value=13 Score=42.44 Aligned_cols=27 Identities=19% Similarity=-0.059 Sum_probs=14.3
Q ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHH
Q 002716 603 KGVLYFRQSLLLLRLNCPEAAMRSLQL 629 (889)
Q Consensus 603 ~~~~~~~la~~~~~~g~~~~A~~~l~~ 629 (889)
++..|..+|...+.+|+++-|..+|++
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 344555555555555555555555544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.08 E-value=29 Score=38.21 Aligned_cols=137 Identities=15% Similarity=0.145 Sum_probs=88.6
Q ss_pred CHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhH
Q 002716 494 NVEAALAEINRILGFKL-ALECLELRFCFFLALE--DYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTI 570 (889)
Q Consensus 494 ~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~ 570 (889)
..++-+.....++..+| ...+++.+.++..+.+ ++..-++.++++++.||.+. .++...-.+.......
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNf------h~W~YRRfV~~~~~~~-- 161 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNF------HAWHYRRFVVEQAERS-- 161 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccc------cchHHHHHHHHHHhcc--
Confidence 45666777788888888 7778888888877655 46778888899999998887 5555554444433321
Q ss_pred HHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHH------hCC------HHHHHHHHHHHHHcCCCcH
Q 002716 571 ADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR------LNC------PEAAMRSLQLARQHAASDH 638 (889)
Q Consensus 571 A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~------~g~------~~~A~~~l~~al~~~p~~~ 638 (889)
..++.+.+....+++..++.+-.+|.....++.. .|+ ...-+.....|+-.+|++.
T Consensus 162 ------------~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~Dq 229 (421)
T KOG0529|consen 162 ------------RNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQ 229 (421)
T ss_pred ------------cccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCcccc
Confidence 0011222444478888888888888877766652 231 1233444556677788888
Q ss_pred HHHHHHHHHHHh
Q 002716 639 ERLVYEGWILYD 650 (889)
Q Consensus 639 ~~~~~lg~~~~~ 650 (889)
.+|++.-+.+.+
T Consensus 230 S~WfY~rWLl~~ 241 (421)
T KOG0529|consen 230 SCWFYHRWLLGR 241 (421)
T ss_pred ceeeehHHhhcc
Confidence 877775555443
|
|
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.05 E-value=28 Score=36.90 Aligned_cols=128 Identities=14% Similarity=0.060 Sum_probs=75.7
Q ss_pred hcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 002716 580 RWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLR 659 (889)
Q Consensus 580 ~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~ 659 (889)
.|..-+...-+....++++++|+-+.++..++.- +.--..+|.+.++++++.... -++........|...+|..
T Consensus 194 AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~----~yr~sqq~qh~~~~~da~~ 267 (556)
T KOG3807|consen 194 AWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGET----IYRQSQQCQHQSPQHEAQL 267 (556)
T ss_pred HHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHH----HHhhHHHHhhhccchhhhh
Confidence 4555555556777789999999988888877653 233466788888888875432 2233333333333333321
Q ss_pred HHHHHHhcCCCh--HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCch------hHHHHHHHHHHHHcCChHH
Q 002716 660 KAEESIQMKRSF--EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK------GQALNNLGSVYVDCGQLDL 730 (889)
Q Consensus 660 ~~~~al~~~p~~--~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~------~~~~~~Lg~~y~~~g~~~~ 730 (889)
+.+-+- -....++.+-..+| ++.+|.+.+.+..+. ..+.-||-.......-|.+
T Consensus 268 ------rRDtnvl~YIKRRLAMCARklG-----------rlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYAD 329 (556)
T KOG3807|consen 268 ------RRDTNVLVYIKRRLAMCARKLG-----------RLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYAD 329 (556)
T ss_pred ------hcccchhhHHHHHHHHHHHHhh-----------hHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222 23345788888888 999999998887433 2334444444444444433
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.96 E-value=0.82 Score=45.58 Aligned_cols=59 Identities=19% Similarity=0.117 Sum_probs=49.4
Q ss_pred HHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCc
Q 002716 488 SLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (889)
Q Consensus 488 ~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 546 (889)
...+.++.+.|.+.|++++...| ....++..|....+.|+++.|.+.|++.++++|.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 34567888888888888888888 777888888888888888888888888888888776
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=87.93 E-value=69 Score=38.50 Aligned_cols=122 Identities=7% Similarity=-0.073 Sum_probs=67.1
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHH
Q 002716 482 YMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLV 561 (889)
Q Consensus 482 ~~~la~~~~~~g~~~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~ 561 (889)
.+..|.-..+.|++..+.....+ +.-.|- ..+.....+....++. ....+...++..|+.+ .+..+....
T Consensus 36 ~f~~A~~a~~~g~~~~~~~~~~~-l~d~pL-~~yl~y~~L~~~l~~~--~~~ev~~Fl~~~~~~P------~~~~Lr~~~ 105 (644)
T PRK11619 36 RYQQIKQAWDNRQMDVVEQLMPT-LKDYPL-YPYLEYRQLTQDLMNQ--PAVQVTNFIRANPTLP------PARSLQSRF 105 (644)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHh-ccCCCc-HhHHHHHHHHhccccC--CHHHHHHHHHHCCCCc------hHHHHHHHH
Confidence 44556667788888887666554 333442 1111111111222211 2225666777888877 333333332
Q ss_pred HHH---hhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Q 002716 562 REH---IDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA 635 (889)
Q Consensus 562 ~~~---~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p 635 (889)
... .++|..-. +.....|.+....+..+......|+.++|....+++.....
T Consensus 106 l~~La~~~~w~~~~----------------------~~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~ 160 (644)
T PRK11619 106 VNELARREDWRGLL----------------------AFSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK 160 (644)
T ss_pred HHHHHHccCHHHHH----------------------HhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Confidence 222 33444332 21223477788888888888999998888777777655443
|
|
| >KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.77 E-value=2.9 Score=40.04 Aligned_cols=91 Identities=18% Similarity=0.205 Sum_probs=67.0
Q ss_pred CCeEEEehHHHHhhcChhhhhhhcCCCCCCCcCceEecCCCCCHHHHHHHHHhhccCCCC--------------------
Q 002716 189 HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLN-------------------- 248 (889)
Q Consensus 189 ~~~~~~~hr~vLaa~s~~F~~mf~~~~~e~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~-------------------- 248 (889)
+|+.|.+-+.+. ..|..+.+++...=-......|.|+ +|+..+|..+++|++.-+-+
T Consensus 13 DG~~f~ve~~~a-~~s~~i~~~~~~~~~~~~~~~IPl~--nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD 89 (162)
T KOG1724|consen 13 DGEIFEVEEEVA-RQSQTISAHMIEDGCADENDPIPLP--NVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWD 89 (162)
T ss_pred CCceeehhHHHH-HHhHHHHHHHHHcCCCccCCccccC--ccCHHHHHHHHHHHHHcccccccccccccccccCCccHHH
Confidence 788999988874 7899988888642211222578888 59999999999999873321
Q ss_pred ----CCCHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhc
Q 002716 249 ----GVTPNLLLEILIFANKFCCERLKDACDRKLASLV 282 (889)
Q Consensus 249 ----~~~~~~~~~ll~~A~~~~~~~l~~~~~~~l~~~~ 282 (889)
.++.+++.+|+.+|+.+-+..|.+.|.+.++.++
T Consensus 90 ~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mi 127 (162)
T KOG1724|consen 90 AEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMI 127 (162)
T ss_pred HHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHH
Confidence 0234578888888888888888888877777666
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.17 E-value=22 Score=40.94 Aligned_cols=20 Identities=25% Similarity=0.215 Sum_probs=10.8
Q ss_pred HHhcCCcccchhhHHHHHHH
Q 002716 74 ELELCPLQERSSLYLLQFQV 93 (889)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~ 93 (889)
.|-+|+-.|-..-=-+|-.|
T Consensus 107 ~LasCsLsdFglWS~~qK~V 126 (1081)
T KOG1538|consen 107 QLASCSLSDFGLWSPEQKSV 126 (1081)
T ss_pred HhhhcchhhccccChhhhhH
Confidence 46788876643333344443
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.17 E-value=23 Score=40.60 Aligned_cols=131 Identities=14% Similarity=-0.109 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHcCCC-CHHHHHH--HHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHH
Q 002716 496 EAALAEINRILGFKL-ALECLEL--RFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIAD 572 (889)
Q Consensus 496 ~~Al~~l~kal~~~p-~~~~l~~--~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~ 572 (889)
.-|+..+...+.+++ ++..+.. +...+...++...+.-.....+..+|++. .+...|+......|....+.
T Consensus 48 ~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~L~~ale~~~~~~~~~ 121 (620)
T COG3914 48 ALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENC------PAVQNLAAALELDGLQFLAL 121 (620)
T ss_pred hHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccc------hHHHHHHHHHHHhhhHHHHH
Confidence 335555555555666 4444322 35556667788788888888888888888 67777777766666555542
Q ss_pred HHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHH------HHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 002716 573 CWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQ------SLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGW 646 (889)
Q Consensus 573 ~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~l------a~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~ 646 (889)
.-+ .+-+....|.+......+ +.....+|+..++...++++.+..|.++.+...+..
T Consensus 122 ~~~-----------------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~ 184 (620)
T COG3914 122 ADI-----------------SEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMT 184 (620)
T ss_pred HHH-----------------HHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHH
Confidence 222 133666667766655444 778888888899999999999988888766555544
Q ss_pred HHH
Q 002716 647 ILY 649 (889)
Q Consensus 647 ~~~ 649 (889)
...
T Consensus 185 ~r~ 187 (620)
T COG3914 185 ARQ 187 (620)
T ss_pred HHH
Confidence 433
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=87.14 E-value=22 Score=35.38 Aligned_cols=86 Identities=13% Similarity=0.065 Sum_probs=58.9
Q ss_pred hccCHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-----CHHHHHHH
Q 002716 774 ARNNASAYEKRSEYCDRELTRADLEMVTQL-DPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKA-----DLHLLHLR 847 (889)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~A~~~l~~al~l-~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p-----~~~~l~l~ 847 (889)
.++-..+|+....+|+ ++|...|-++-.. .-+++...+.+|..|. ..+.++|+..+.+++++.+ +++++..+
T Consensus 107 S~dP~llYy~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sL 184 (203)
T PF11207_consen 107 SQDPYLLYYHWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSL 184 (203)
T ss_pred CCCccHHHHHhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHH
Confidence 3333445566666555 4555555544332 2356778888887776 5678999999999997643 35777788
Q ss_pred HHHHHHcCCHHHHH
Q 002716 848 AAFHEHTGDVLGAL 861 (889)
Q Consensus 848 a~~~~~~g~~~~A~ 861 (889)
+.++.++|+++.|-
T Consensus 185 as~~~~~~~~e~AY 198 (203)
T PF11207_consen 185 ASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHhcchhhhh
Confidence 88888889999884
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=86.99 E-value=21 Score=37.48 Aligned_cols=109 Identities=17% Similarity=0.035 Sum_probs=51.9
Q ss_pred hcccHHHHHHHHHHHHHcCcchhHhhHHHHHhhcCCcHHHHHHHhhhhhccCcchhHHHHHhhcCChhHHHHHHHHhhhc
Q 002716 395 LRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATAL 474 (889)
Q Consensus 395 ~~g~~~eA~~~~~~al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~al~~ 474 (889)
.+++|++|++.+.... ......|+...|-+...-+++.+...+. ...++.+..+-+.+..
T Consensus 2 ~~kky~eAidLL~~Ga------------~~ll~~~Q~~sg~DL~~lliev~~~~~~--------~~~~~~~~rl~~l~~~ 61 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGA------------LILLKHGQYGSGADLALLLIEVYEKSED--------PVDEESIARLIELISL 61 (260)
T ss_dssp HTT-HHHHHHHHHHHH------------HHHHHTT-HHHHHHHHHHHHHHHHHTT-----------SHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHH------------HHHHHCCCcchHHHHHHHHHHHHHHcCC--------CCCHHHHHHHHHHHHh
Confidence 5788999999887663 3344445555555444444433221110 0113333444444443
Q ss_pred CC-CChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHhcccHHHHHHHH
Q 002716 475 DP-TLSYPYMYRASSLMTKQNVEAALAEINRILGFKL--ALECLELRFCFFLALEDYQAALCDV 535 (889)
Q Consensus 475 dp-~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p--~~~~l~~~a~~~~~~g~~~~A~~~~ 535 (889)
-| +.++ +..=...|++.- + ..-.| +++.+...|..+.+.|++.+|...+
T Consensus 62 ~~~~~p~----------r~~fi~~ai~WS-~-~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 62 FPPEEPE----------RKKFIKAAIKWS-K-FGSYKFGDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp S-TT-TT----------HHHHHHHHHHHH-H-TSS-TT--HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CCCCcch----------HHHHHHHHHHHH-c-cCCCCCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 33 2222 111123344443 1 12233 7778888888888888887777665
|
; PDB: 3LKU_E 2WPV_G. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=86.96 E-value=6.7 Score=36.78 Aligned_cols=62 Identities=15% Similarity=-0.010 Sum_probs=55.1
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHH
Q 002716 594 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCE 655 (889)
Q Consensus 594 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~ 655 (889)
..+--+.|+.+.+-.--|.++...|++.+|++.|+...+..+..+...-.++.+++.+|+.+
T Consensus 34 dALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 34 DALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred HHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 55555789999999999999999999999999999999998888888888999999998864
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.84 E-value=0.52 Score=48.33 Aligned_cols=85 Identities=9% Similarity=0.181 Sum_probs=64.1
Q ss_pred cEEEEeCCeEEEehHHHHhhcCh-hhhhhhcCCCC---CCCcCceEecCCCCCHHHHHHHHHhhccCCCCCCCH-HHHHH
Q 002716 183 NVVFRIHEEKIECDRQKFAALSA-PFSAMLNGSFM---ESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTP-NLLLE 257 (889)
Q Consensus 183 Dv~~~v~~~~~~~hr~vLaa~s~-~F~~mf~~~~~---e~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~-~~~~~ 257 (889)
-++..|++..|-..+.+|.+.-. -.-.||.+++. -.+..+.++-| ||+..+|+++|+|.-||.+. .++ -.|-+
T Consensus 97 ~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAd-Gi~s~vFRAILdYYksG~iR-CP~~vSvpE 174 (438)
T KOG3840|consen 97 KVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVAD-GMTSSCFRAILDYYQSGTMR-CPSSVSVSE 174 (438)
T ss_pred ceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhc-chhHHHHHHHHHHHhcCcee-CCCCCchHH
Confidence 47788889999998888854322 33567777653 22346888888 99999999999999999998 544 46778
Q ss_pred HHHHHHHHcHHH
Q 002716 258 ILIFANKFCCER 269 (889)
Q Consensus 258 ll~~A~~~~~~~ 269 (889)
|-.+.|.+|+.|
T Consensus 175 LrEACDYLlipF 186 (438)
T KOG3840|consen 175 LREACDYLLVPF 186 (438)
T ss_pred HHhhcceEEeec
Confidence 888888887665
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.32 E-value=2.2 Score=47.60 Aligned_cols=85 Identities=19% Similarity=0.092 Sum_probs=75.6
Q ss_pred hHHHHHHHHhhhcCCCChhhHHHHHHHHHhc---cCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHH
Q 002716 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTK---QNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQA 537 (889)
Q Consensus 462 ~~A~~~~~~al~~dp~~~~a~~~la~~~~~~---g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~ 537 (889)
..++..|.+++...|.....|..+|.++++. |+.-.|+.....++.++| ...+++.++.++..++.+.+|+.....
T Consensus 391 ~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~a 470 (758)
T KOG1310|consen 391 SGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWA 470 (758)
T ss_pred HHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHH
Confidence 6789999999999999999999999998875 566778888899999999 888999999999999999999999999
Q ss_pred HHHhCCCCc
Q 002716 538 ILTLSPDYR 546 (889)
Q Consensus 538 al~~~p~~~ 546 (889)
+....|.+.
T Consensus 471 lq~~~Ptd~ 479 (758)
T KOG1310|consen 471 LQMSFPTDV 479 (758)
T ss_pred HhhcCchhh
Confidence 888888665
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.30 E-value=6 Score=44.19 Aligned_cols=81 Identities=11% Similarity=0.046 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhccCHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCC-HHHHHHHHHHHHhcC
Q 002716 764 YEEMTKLIKKARNNASAYEKRSEY----CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHK-ENEAIAELSRAIAFK 838 (889)
Q Consensus 764 ~~~~~~al~~~~~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~-~~eA~~~l~kal~~~ 838 (889)
...|+.+....+.+..++.....| +.+.+-...|.+++..+|+++..|..-|.-.+..+. .+.|...+.+++.++
T Consensus 91 v~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n 170 (568)
T KOG2396|consen 91 VFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN 170 (568)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC
Confidence 455666666666666655555554 235556666677777777777777666655444443 666677777777777
Q ss_pred CCHHHH
Q 002716 839 ADLHLL 844 (889)
Q Consensus 839 p~~~~l 844 (889)
|+.+.+
T Consensus 171 pdsp~L 176 (568)
T KOG2396|consen 171 PDSPKL 176 (568)
T ss_pred CCChHH
Confidence 765443
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=86.01 E-value=3.8 Score=35.49 Aligned_cols=59 Identities=14% Similarity=0.192 Sum_probs=44.9
Q ss_pred HHHhccCHHHHHHHHHHHHcCCC-----C-----HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCc
Q 002716 488 SLMTKQNVEAALAEINRILGFKL-----A-----LECLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (889)
Q Consensus 488 ~~~~~g~~~~Al~~l~kal~~~p-----~-----~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 546 (889)
...+.|+|.+|++.+.+...... . ..++..+|.++...|++++|+..+++++++.....
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~ 75 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENG 75 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC
Confidence 34678899999888887775543 1 24556678889999999999999999998765544
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=85.97 E-value=21 Score=35.53 Aligned_cols=76 Identities=16% Similarity=0.143 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHcCCC--CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHH
Q 002716 496 EAALAEINRILGFKL--ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADC 573 (889)
Q Consensus 496 ~~Al~~l~kal~~~p--~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~ 573 (889)
++|...|-++-+... +++..+.+|..|. ..|.++|+..+.++|++.+....+.. +.+..|+.++...|+++.|--
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~--eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNP--EILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCH--HHHHHHHHHHHHhcchhhhhh
Confidence 556666666544333 6666677666655 67778888888888877655432333 667778888888888887765
Q ss_pred H
Q 002716 574 W 574 (889)
Q Consensus 574 ~ 574 (889)
|
T Consensus 200 w 200 (203)
T PF11207_consen 200 W 200 (203)
T ss_pred h
Confidence 5
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.44 E-value=2.2 Score=47.62 Aligned_cols=85 Identities=19% Similarity=0.158 Sum_probs=71.7
Q ss_pred HHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHH
Q 002716 485 RASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLAL---EDYQAALCDVQAILTLSPDYRMFEGRVAASQLHML 560 (889)
Q Consensus 485 la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~ 560 (889)
-|.--+..+.+..|+..|.++++..| ...++..++.++.+. |+--.|+.+...+++++|... .+++.|+.
T Consensus 380 egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~------kah~~la~ 453 (758)
T KOG1310|consen 380 EGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQ------KAHFRLAR 453 (758)
T ss_pred hccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHH------HHHHHHHH
Confidence 34444455678889999999999999 888888888888765 567789999999999999998 89999999
Q ss_pred HHHHhhchhHHHHHH
Q 002716 561 VREHIDNWTIADCWL 575 (889)
Q Consensus 561 ~~~~~~~~~~A~~~~ 575 (889)
+...++++.+|+...
T Consensus 454 aL~el~r~~eal~~~ 468 (758)
T KOG1310|consen 454 ALNELTRYLEALSCH 468 (758)
T ss_pred HHHHHhhHHHhhhhH
Confidence 999999999996665
|
|
| >KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.33 E-value=13 Score=40.53 Aligned_cols=86 Identities=14% Similarity=0.012 Sum_probs=40.6
Q ss_pred HHhccCHHHHHHHHHHHHcCC----C------CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHH
Q 002716 489 LMTKQNVEAALAEINRILGFK----L------ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLH 558 (889)
Q Consensus 489 ~~~~g~~~~Al~~l~kal~~~----p------~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l 558 (889)
++.++++.+|.+.-+..+..- . ....++.....|...|+...-...+...++...--....++....+++
T Consensus 136 l~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~L 215 (493)
T KOG2581|consen 136 LIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLL 215 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHH
Confidence 345688888887766554321 1 122333344444555555444444444443322111222222334444
Q ss_pred HHHHHHhhchhHHHHH
Q 002716 559 MLVREHIDNWTIADCW 574 (889)
Q Consensus 559 g~~~~~~~~~~~A~~~ 574 (889)
-..|...+.|+.|...
T Consensus 216 Lr~yL~n~lydqa~~l 231 (493)
T KOG2581|consen 216 LRNYLHNKLYDQADKL 231 (493)
T ss_pred HHHHhhhHHHHHHHHH
Confidence 5555555666666333
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.32 E-value=51 Score=34.39 Aligned_cols=264 Identities=13% Similarity=0.013 Sum_probs=139.3
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcCCC--------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh--HHHHHH
Q 002716 608 FRQSLLLLRLNCPEAAMRSLQLARQHAAS--------DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF--EAFFLK 677 (889)
Q Consensus 608 ~~la~~~~~~g~~~~A~~~l~~al~~~p~--------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~--~a~~~l 677 (889)
..+|.-....+++++|+..|.+.+..... ...+...++.+|...|++..--+.....-..-.++ .-....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 45677778889999999999999876322 23456789999999998765433332222111111 000011
Q ss_pred HHHHHH-cCCCCCcchhhhhhHHHHhcchhhhCch---hHHHHHHHHHHHHcCChHHHHHHHHHHHcc----C--cc--h
Q 002716 678 AYALAD-SSQDSSCSSTVVSLLEDALKCPSDRLRK---GQALNNLGSVYVDCGQLDLAADCYSNALKI----R--HT--R 745 (889)
Q Consensus 678 a~~~~~-~~~~~~~~~~~~~~~~~Al~~~~~~~~~---~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~----~--p~--~ 745 (889)
...+.+ -...+.+....+......+++..+-.+. ...-..+...+.+.|+|.+|+......+.. + +. .
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 111111 1112223333333444444433332221 334456788899999999999887766532 2 22 6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----ccCHH--HHHHHHhc----CCHHHHHHHHHHHHhcCC---CChHH-
Q 002716 746 AHQGLARVHFLKNNKTTAYEEMTKLIKKA-----RNNAS--AYEKRSEY----CDRELTRADLEMVTQLDP---LRVYP- 810 (889)
Q Consensus 746 a~~~La~~~~~~g~~~~A~~~~~~al~~~-----~~~~~--~~~~~~~~----~~~~~A~~~l~~al~l~p---~~~~~- 810 (889)
.+..-..+|....+..++...++.+-... |+... +-..-|.+ .++.-|-.+|-.+++--. .+..+
T Consensus 167 vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc 246 (421)
T COG5159 167 VHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKAC 246 (421)
T ss_pred hhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHH
Confidence 67777888888888888887777664433 21111 11111222 377788888888876321 22222
Q ss_pred ----HHHHHHHHHhCCCHHHHHHHH--HHHHhcCCCH--HHHHHHHHHH--HHcCCHHHHHHHHHHHHccCCC
Q 002716 811 ----YRYRAAVLMDSHKENEAIAEL--SRAIAFKADL--HLLHLRAAFH--EHTGDVLGALRDCRAALSVDPN 873 (889)
Q Consensus 811 ----~~~la~~~~~~g~~~eA~~~l--~kal~~~p~~--~~l~l~a~~~--~~~g~~~~A~~~~~~al~l~P~ 873 (889)
|..+..+.. +..++--..+ +..++...+- ..+...+..+ ..+.++..|++.|..-+..||-
T Consensus 247 ~sLkYmlLSkIMl--N~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D~~ 317 (421)
T COG5159 247 VSLKYMLLSKIML--NRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDSF 317 (421)
T ss_pred HHHHHHHHHHHHH--hhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCHH
Confidence 222333332 2333322222 1122211111 1121222222 2246888888888887777654
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=85.25 E-value=4.4 Score=35.10 Aligned_cols=59 Identities=24% Similarity=0.132 Sum_probs=46.7
Q ss_pred HHHHhCCHHHHHHHHHHHHHcCCC---------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh
Q 002716 613 LLLRLNCPEAAMRSLQLARQHAAS---------DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (889)
Q Consensus 613 ~~~~~g~~~~A~~~l~~al~~~p~---------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 671 (889)
...+.|++.+|++.+.+..+.... ...++.++|.++...|++++|+..+++++++....
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 346789999999888887765332 13567889999999999999999999999875444
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=84.76 E-value=0.86 Score=28.83 Aligned_cols=23 Identities=35% Similarity=0.312 Sum_probs=20.2
Q ss_pred HHHHhhhHHHhcccHHHHHHHHH
Q 002716 385 AFHQLGCVRLLRKEYDEAEHLFE 407 (889)
Q Consensus 385 a~~~lG~~~~~~g~~~eA~~~~~ 407 (889)
+.+.+|.+++.+|++++|+..++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 56789999999999999998875
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=84.64 E-value=1e+02 Score=37.18 Aligned_cols=139 Identities=12% Similarity=-0.007 Sum_probs=85.1
Q ss_pred HHHHcCChHHHHHHHHHHHccCcc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhcCCH---HHH-H
Q 002716 721 VYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDR---ELT-R 794 (889)
Q Consensus 721 ~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~---~~A-~ 794 (889)
+....++++.+..++...-..... ...+.+|+.+...|+.++|...|+++.. .. .-.-.......|.. ... .
T Consensus 321 ~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~-~~-~fYG~LAa~~Lg~~~~~~~~~~ 398 (644)
T PRK11619 321 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ-QR-GFYPMVAAQRLGEEYPLKIDKA 398 (644)
T ss_pred HHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc-CC-CcHHHHHHHHcCCCCCCCCCCC
Confidence 444677888777777664222112 7888899998889999999999999744 22 21111111112211 000 0
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002716 795 ADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAA 867 (889)
Q Consensus 795 ~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~l~l~a~~~~~~g~~~~A~~~~~~a 867 (889)
..-...+.. ..-...+..+...|+...|...+..++.. .+.......+.+....|.++.|+....++
T Consensus 399 ~~~~~~~~~-----~~~~~ra~~L~~~g~~~~a~~ew~~~~~~-~~~~~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 399 PKPDSALTQ-----GPEMARVRELMYWNMDNTARSEWANLVAS-RSKTEQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred Cchhhhhcc-----ChHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 000011111 13455777888999999999999888875 45555556666777778888888776554
|
|
| >COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.38 E-value=6.7 Score=35.13 Aligned_cols=95 Identities=23% Similarity=0.217 Sum_probs=62.7
Q ss_pred cEEEE-eCCeEEEehHHHHhhcChhhhhhhcCCCCCCCcCceEecCCCCCHHHHHHHHHhhccCCCC--C----------
Q 002716 183 NVVFR-IHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLN--G---------- 249 (889)
Q Consensus 183 Dv~~~-v~~~~~~~hr~vLaa~s~~F~~mf~~~~~e~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~--~---------- 249 (889)
-|.+. ++|+.|...+.+ |-+|-..+.|+... .+.+ -.|.++ +|...+|+.+++|+-..+-+ .
T Consensus 3 ~i~l~s~dge~F~vd~~i-AerSiLikN~l~d~-~~~n-~p~p~p--nVrSsvl~kv~ew~ehh~~s~sede~d~~~rks 77 (158)
T COG5201 3 MIELESIDGEIFRVDENI-AERSILIKNMLCDS-TACN-YPIPAP--NVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKS 77 (158)
T ss_pred ceEEEecCCcEEEehHHH-HHHHHHHHHHhccc-cccC-CCCccc--chhHHHHHHHHHHHHhccccCCCccChHhhhcc
Confidence 34454 488999998876 78999899888542 2222 223344 59999999999998543222 0
Q ss_pred ------------CCHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhc
Q 002716 250 ------------VTPNLLLEILIFANKFCCERLKDACDRKLASLV 282 (889)
Q Consensus 250 ------------~~~~~~~~ll~~A~~~~~~~l~~~~~~~l~~~~ 282 (889)
++.+++.++.-+|+.+-...|-+.|...++..+
T Consensus 78 ~p~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemi 122 (158)
T COG5201 78 KPSDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMI 122 (158)
T ss_pred CCccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHH
Confidence 223456677777777777777776666666555
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.22 E-value=8.7 Score=48.02 Aligned_cols=167 Identities=14% Similarity=0.081 Sum_probs=109.4
Q ss_pred hHHHHHHHHHhccCHHHHHH------HHHHHHc-CCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCc--chhh
Q 002716 481 PYMYRASSLMTKQNVEAALA------EINRILG-FKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYR--MFEG 550 (889)
Q Consensus 481 a~~~la~~~~~~g~~~~Al~------~l~kal~-~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~ 550 (889)
-....|..-..+|.+.+|.+ .++...+ ..| ...++..++.++...|++++|+..-.++.-+...-. ....
T Consensus 934 ~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~ 1013 (1236)
T KOG1839|consen 934 DSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPN 1013 (1236)
T ss_pred hhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHH
Confidence 34566777778888888877 4443322 344 778899999999999999999998877754321100 0111
Q ss_pred hHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhc--------CCCChHHHHHHHHHHHHhCCHHH
Q 002716 551 RVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES--------DAPKGVLYFRQSLLLLRLNCPEA 622 (889)
Q Consensus 551 ~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~ 622 (889)
....+-.++......++...|...+ .++... .|.-.....+++.++...++++.
T Consensus 1014 t~~~y~nlal~~f~~~~~~~al~~~------------------~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~ 1075 (1236)
T KOG1839|consen 1014 TKLAYGNLALYEFAVKNLSGALKSL------------------NRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADT 1075 (1236)
T ss_pred HHHHhhHHHHHHHhccCccchhhhH------------------HHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHH
Confidence 1246666777777777777775555 444332 35555666788999999999999
Q ss_pred HHHHHHHHHHcCCC--------cHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002716 623 AMRSLQLARQHAAS--------DHERLVYEGWILYDTSHCEEGLRKAEESI 665 (889)
Q Consensus 623 A~~~l~~al~~~p~--------~~~~~~~lg~~~~~~g~~~eA~~~~~~al 665 (889)
|+++++.|.+.+.. ....+..++......+++..|+...+...
T Consensus 1076 al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~ 1126 (1236)
T KOG1839|consen 1076 ALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTY 1126 (1236)
T ss_pred HHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHH
Confidence 99999999875422 22344455555555666665555554443
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=84.17 E-value=77 Score=35.49 Aligned_cols=118 Identities=11% Similarity=0.024 Sum_probs=86.6
Q ss_pred hHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 002716 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILT 540 (889)
Q Consensus 462 ~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~ 540 (889)
..|-..+..++...|.++.--...+.+....|.|+.|.+.+.-+-+.-. ...+...+-.-.+.+|++++|...-.-.+.
T Consensus 306 ~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~ 385 (831)
T PRK15180 306 IAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLS 385 (831)
T ss_pred HHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 4555666778888899998888899999999999999998876655444 445555566777889999999999888887
Q ss_pred hCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCC
Q 002716 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK 603 (889)
Q Consensus 541 ~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~ 603 (889)
-.-+.+ +.....+......|-++++.-+. ++.+.++|..
T Consensus 386 ~eie~~------ei~~iaa~sa~~l~~~d~~~~~w------------------k~~~~~~~~~ 424 (831)
T PRK15180 386 NEIEDE------EVLTVAAGSADALQLFDKSYHYW------------------KRVLLLNPET 424 (831)
T ss_pred cccCCh------hheeeecccHHHHhHHHHHHHHH------------------HHHhccCChh
Confidence 655555 33333445566778888885555 7777777643
|
|
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.98 E-value=33 Score=39.73 Aligned_cols=91 Identities=10% Similarity=0.003 Sum_probs=75.3
Q ss_pred HHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCC------hHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 002716 559 MLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK------GVLYFRQSLLLLRLNCPEAAMRSLQLARQ 632 (889)
Q Consensus 559 g~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~l~~al~ 632 (889)
+.-..+.++|..+.+|| ...+.-.|.+ ......++.+|+.+.+.+.|.++++.|-+
T Consensus 361 A~~~F~~~~Y~~s~~~y------------------~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~ 422 (872)
T KOG4814|consen 361 AKKLFKMEKYVVSIRFY------------------KLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEE 422 (872)
T ss_pred hHHHHHHHHHHHHHHHH------------------HHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 45567788899998888 5555544433 34566889999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002716 633 HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (889)
Q Consensus 633 ~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 667 (889)
.+|.++-.....-.+....|.-++|+.........
T Consensus 423 ~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 423 VDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred hccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 99999998888888889999999999998877654
|
|
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.60 E-value=5.8 Score=41.19 Aligned_cols=74 Identities=14% Similarity=0.109 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Q 002716 555 SQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA 634 (889)
Q Consensus 555 ~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 634 (889)
..++-..+...++++.|.... ++.+..+|.++.-+.-.|.+|.++|.+.-|+..++..+++.
T Consensus 184 l~~lk~~~~~e~~~~~al~~~------------------~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~ 245 (269)
T COG2912 184 LRNLKAALLRELQWELALRVA------------------ERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHC 245 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHH------------------HHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhC
Confidence 445556777888888886666 88999999999888889999999999999999999999999
Q ss_pred CCcHHHHHHHHH
Q 002716 635 ASDHERLVYEGW 646 (889)
Q Consensus 635 p~~~~~~~~lg~ 646 (889)
|+++.+....+.
T Consensus 246 P~~~~a~~ir~~ 257 (269)
T COG2912 246 PDDPIAEMIRAQ 257 (269)
T ss_pred CCchHHHHHHHH
Confidence 988776554443
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.19 E-value=8.8 Score=47.99 Aligned_cols=145 Identities=14% Similarity=0.064 Sum_probs=81.7
Q ss_pred HhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 002716 597 LESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH--------AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (889)
Q Consensus 597 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~--------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 668 (889)
-.+.|..+..+..++.++.+.|+.++|+..-.++.-+ .|+....+.+++...+..++...|+..+.++..+.
T Consensus 966 ~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~ 1045 (1236)
T KOG1839|consen 966 GVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLK 1045 (1236)
T ss_pred hhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhh
Confidence 3445566666666666666666666666665444322 23333444455544444444444444444433110
Q ss_pred CChHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc----
Q 002716 669 RSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT---- 744 (889)
Q Consensus 669 p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~---- 744 (889)
-+..-+..+..+....+++.++...++++.|+.+.+.|++.+..
T Consensus 1046 --------------------------------~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~ 1093 (1236)
T KOG1839|consen 1046 --------------------------------LLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGP 1093 (1236)
T ss_pred --------------------------------ccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCc
Confidence 00011111233556678888888889999999999999886533
Q ss_pred ------hHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 002716 745 ------RAHQGLARVHFLKNNKTTAYEEMTKLIKK 773 (889)
Q Consensus 745 ------~a~~~La~~~~~~g~~~~A~~~~~~al~~ 773 (889)
..+..+++++...|++..|+...+.....
T Consensus 1094 ~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1094 KELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred cchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 44555666666666666666555544433
|
|
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.90 E-value=72 Score=34.24 Aligned_cols=245 Identities=16% Similarity=0.138 Sum_probs=140.7
Q ss_pred HHHHHHHhhhHHHhcccHHHHHHHHHHHHHcCcchhHhhHHHHHhhcCCcHHHHHHHhhhhhccC----c----------
Q 002716 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVT----P---------- 447 (889)
Q Consensus 382 ~~~a~~~lG~~~~~~g~~~eA~~~~~~al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~----~---------- 447 (889)
+-.+...+|..+...|++++=....+..-. .....+-|+ +-+....+++... .
T Consensus 47 kE~~Ilel~~ll~~~~~~~~lr~li~~~Rp---f~~~v~Kak----------aaKlvR~Lvd~~~~~~~~~~~~i~l~~~ 113 (411)
T KOG1463|consen 47 KEQSILELGDLLAKEGDAEELRDLITSLRP---FLSSVSKAK----------AAKLVRSLVDMFLKIDDGTGDQIELCTE 113 (411)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHH---HHHHhhhHH----------HHHHHHHHHHHHccCCCCcchHHHHHHH
Confidence 345667899999999999987776655422 122222222 1222222222211 1
Q ss_pred -chhHHHHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHc----CCC---CHHHHHHHH
Q 002716 448 -LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILG----FKL---ALECLELRF 519 (889)
Q Consensus 448 -~g~~~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~----~~p---~~~~l~~~a 519 (889)
.+|+-.+. -..+.+.++ ..+..+|+..++|.+|+...+..+. .+. -.+.+.+-.
T Consensus 114 cIeWA~~ek---------RtFLRq~Le---------arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llES 175 (411)
T KOG1463|consen 114 CIEWAKREK---------RTFLRQSLE---------ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLES 175 (411)
T ss_pred HHHHHHHHh---------HHHHHHHHH---------HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhh
Confidence 12332222 222444433 3578899999999999998877653 222 345566678
Q ss_pred HHHHhcccHHHHHHHHHHHHHhC-CCCcchhhhHHHHHHHHHHHHHhhchhHHHHHH-Hhhhhccccccc-chHHHHHHH
Q 002716 520 CFFLALEDYQAALCDVQAILTLS-PDYRMFEGRVAASQLHMLVREHIDNWTIADCWL-QLYDRWSSVDDI-GSLSVIYQM 596 (889)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~-~l~~~~~~~dd~-~sl~~~~~a 596 (889)
..|+...+..+|...+..+-... .-+.+...+...-..-|.++....+|..|-.+| +.|+.|.++++. .++
T Consensus 176 K~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~------ 249 (411)
T KOG1463|consen 176 KAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKAL------ 249 (411)
T ss_pred HHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHH------
Confidence 88999999999998887776532 111112222223334467777778999998887 222333333221 111
Q ss_pred HhcCCCChHHHHHHHHHHHHhCCHHHHHHH--HHHHHHcCCCcHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhcCCCh
Q 002716 597 LESDAPKGVLYFRQSLLLLRLNCPEAAMRS--LQLARQHAASDHERLVYEGWILYD--TSHCEEGLRKAEESIQMKRSF 671 (889)
Q Consensus 597 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~--l~~al~~~p~~~~~~~~lg~~~~~--~g~~~eA~~~~~~al~~~p~~ 671 (889)
..+..+-.+-...+..++--.. -..+++....+.++....+..+.. ..+++.|+..|..=+..+|=-
T Consensus 250 --------~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~iv 320 (411)
T KOG1463|consen 250 --------TSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPIV 320 (411)
T ss_pred --------HHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChHH
Confidence 1122222333455666554333 345666666677777777777654 467889999888877666644
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=82.08 E-value=1.7 Score=30.46 Aligned_cols=29 Identities=21% Similarity=0.373 Sum_probs=26.2
Q ss_pred HHHHHhhhHHHhcccHHHHHHHHHHHHHc
Q 002716 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNA 412 (889)
Q Consensus 384 ~a~~~lG~~~~~~g~~~eA~~~~~~al~~ 412 (889)
.++..||.+-+..++|++|++-|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35778999999999999999999999875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.02 E-value=83 Score=36.26 Aligned_cols=144 Identities=17% Similarity=0.059 Sum_probs=87.6
Q ss_pred cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHc---------CCC-------------CHH---HHHHHHHHHHhcccH
Q 002716 474 LDPTLSYPYMYRASSLMTKQNVEAALAEINRILG---------FKL-------------ALE---CLELRFCFFLALEDY 528 (889)
Q Consensus 474 ~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~---------~~p-------------~~~---~l~~~a~~~~~~g~~ 528 (889)
-.|.....+..++.+...+|+.+-|...+.+++= +.| +.. +++..-......|-+
T Consensus 279 ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~ 358 (665)
T KOG2422|consen 279 SSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCW 358 (665)
T ss_pred cCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCCh
Confidence 3577888899999999999999999888887761 111 111 122223334567999
Q ss_pred HHHHHHHHHHHHhCCC-CcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHH
Q 002716 529 QAALCDVQAILTLSPD-YRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLY 607 (889)
Q Consensus 529 ~~A~~~~~~al~~~p~-~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~ 607 (889)
..|.+.++-++.++|. ++. .+.+.+-....+..+|.=-+++++.++. ..-+..-|+.+. -
T Consensus 359 rTA~E~cKlllsLdp~eDPl-----~~l~~ID~~ALrareYqwiI~~~~~~e~-------------~n~l~~~PN~~y-S 419 (665)
T KOG2422|consen 359 RTALEWCKLLLSLDPSEDPL-----GILYLIDIYALRAREYQWIIELSNEPEN-------------MNKLSQLPNFGY-S 419 (665)
T ss_pred HHHHHHHHHHhhcCCcCCch-----hHHHHHHHHHHHHHhHHHHHHHHHHHHh-------------hccHhhcCCchH-H
Confidence 9999999999999998 661 1222222333344444433333311111 122333344332 2
Q ss_pred HHHHHHHHHhCC---HHHHHHHHHHHHHcCCC
Q 002716 608 FRQSLLLLRLNC---PEAAMRSLQLARQHAAS 636 (889)
Q Consensus 608 ~~la~~~~~~g~---~~~A~~~l~~al~~~p~ 636 (889)
..+|..|..... -..|...+.+|+++.|.
T Consensus 420 ~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 420 LALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 345666666665 45677888888888885
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=80.41 E-value=2.4 Score=29.69 Aligned_cols=29 Identities=24% Similarity=0.454 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHcc
Q 002716 713 QALNNLGSVYVDCGQLDLAADCYSNALKI 741 (889)
Q Consensus 713 ~~~~~Lg~~y~~~g~~~~A~~~~~~al~~ 741 (889)
+++..||.+-...++|++|+..|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35566666666667777777666666654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 86.7 bits (215), Expect = 8e-18
Identities = 57/530 (10%), Positives = 141/530 (26%), Gaps = 83/530 (15%)
Query: 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISS 444
A G K+YD+A + A+ + Y +
Sbjct: 8 ALKDKGNQFFRNKKYDDAIKYYNWAL------ELKEDPVFYSNLSA---CYVSVG----- 53
Query: 445 VTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINR 504
++ + E KA L P S + RAS+ A+ +++
Sbjct: 54 ------DLKK-VV--------EMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSV 98
Query: 505 I---LGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHML 560
+ F A +E + R A+ + D+ + + + L
Sbjct: 99 LSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENL 158
Query: 561 VREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP 620
+ T + ++ + + + + L + +S +
Sbjct: 159 -----PSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFT 213
Query: 621 EA------AMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAF 674
+A + + L + G + + +++I++ ++
Sbjct: 214 KAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSY 273
Query: 675 FLKAYALADSSQDSSCSSTVVSLLEDALKC--------PSDRLRKGQALNNLGSVYVDCG 726
A +AD + + ++ + G +
Sbjct: 274 IYMALIMADRND-----------STEYYNYFDKALKLDSNN----SSVYYHRGQMNFILQ 318
Query: 727 QLDLAADCYSNALKI--RHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKR 784
D A + A ++ + + LA + + +N ++ +K
Sbjct: 319 NYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFF 378
Query: 785 SE-YCDR---ELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKE---------NEAIAEL 831
+E D+ + ++ +L+ Y A ++ + EA L
Sbjct: 379 AEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLL 438
Query: 832 SRAIAFKADLHLLHL-RAAFHEHTGDVLGALRDCRAALSVDPNDQEMLEL 880
+A + A D+ A+ + + +E L+
Sbjct: 439 EKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQA 488
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 2e-07
Identities = 49/478 (10%), Positives = 116/478 (24%), Gaps = 69/478 (14%)
Query: 385 AFHQLGCVRLLRKEYDEAEHLFEAAV-----NAGHIYSIAGLARLGYIKGHKLWAYEKLN 439
+ ++ +A N I + + ++
Sbjct: 75 VLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDID 134
Query: 440 SVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAAL 499
+ ++ T L + + + + + ++ + L
Sbjct: 135 TATATPTELSTQPAKERKDKQENLPSVTSMASF----FGIFKPELTFANYDESNEADKEL 190
Query: 500 AEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHM 559
L + + F A ++ L L A L
Sbjct: 191 MNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKL--------AISLEH 242
Query: 560 LVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNC 619
G+ I + +E P+ Y +L++ N
Sbjct: 243 TGIFKFL--------KNDPL--------GAHEDIKKAIELF-PRVNSYIYMALIMADRND 285
Query: 620 PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKA 678
A + +++ + G + + + ++ + +++ ++ + A
Sbjct: 286 STEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLA 345
Query: 679 YALADSSQDSSCSSTVVSLLEDALKCPSDRLRK----GQALNNLGSVYVDCGQLDLAADC 734
++ +D S+ RK + N + D D A
Sbjct: 346 CLAYRENK-----------FDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQ 394
Query: 735 YSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTR 794
Y A+++ +N Y + L+ KA +
Sbjct: 395 YDLAIEL---------------ENKLDGIYVGIAPLVGKATLLTRNPTVE----NFIEAT 435
Query: 795 ADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLRAAFHE 852
LE ++LDP A + + +EAI + + F E
Sbjct: 436 NLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAE 493
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 5e-05
Identities = 26/152 (17%), Positives = 51/152 (33%), Gaps = 14/152 (9%)
Query: 713 QALNNLGSVYVDCGQLDLAADCYSNALKIRHT-RAHQGLARVHFLKNNKTTAYEEMTKLI 771
AL + G+ + + D A Y+ AL+++ + L+ + + E TK +
Sbjct: 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKAL 66
Query: 772 K------KARNN-ASAYEKRSEYCDRELTRADLEMVTQLD---PLRVYPYRYRAAVLMDS 821
+ K ASA E ++ DL +++ + P R
Sbjct: 67 ELKPDYSKVLLRRASANEGLGKF---ADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAM 123
Query: 822 HKENEAIAELSRAIAFKADLHLLHLRAAFHEH 853
K E ++ A A +L + +
Sbjct: 124 SKLKEKFGDIDTATATPTELSTQPAKERKDKQ 155
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 82.8 bits (205), Expect = 1e-16
Identities = 53/456 (11%), Positives = 116/456 (25%), Gaps = 83/456 (18%)
Query: 466 EDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFK-----------LALEC 514
+ A LDP Y ++ ++ ++E + + L K A E
Sbjct: 46 KYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE- 104
Query: 515 LELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCW 574
+L ++ A+ D+ + +L+ D+ + + N ++
Sbjct: 105 ---------SLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDE 154
Query: 575 LQLYDRWSSVDDIGS-LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 633
+ S + S + LE + + + LL +LQ
Sbjct: 155 GRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLS--------DALQRLYSA 206
Query: 634 AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSS 692
+ + T L ++ + A +
Sbjct: 207 TDEGYLV--ANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNN------ 258
Query: 693 TVVSLLEDALKC--------PSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI--R 742
L DA P+ + L D + A+ +
Sbjct: 259 -----LLDAQVLLQESINLHPTP-----NSYIFLALTLADKENSQEFFKFFQKAVDLNPE 308
Query: 743 HTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTR-----ADL 797
+ + +++F+ + A E+ K N Y + + + + A
Sbjct: 309 YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLA-CLLYKQGKFTESEAFF 367
Query: 798 EMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFK-----------------AD 840
P + A +L D + AI + A +
Sbjct: 368 NETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATI 427
Query: 841 LHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQE 876
L + A++ A +DP ++
Sbjct: 428 LARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQ 463
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 80.2 bits (198), Expect = 1e-15
Identities = 66/539 (12%), Positives = 145/539 (26%), Gaps = 103/539 (19%)
Query: 385 AFHQLGCVRLLRKEYDEAEHLFEAAV----NAGHIYSIAGLARLGYIKGHKLWAYEKLNS 440
G K ++EA ++ A+ N YS Y
Sbjct: 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISAC------------YISTG- 73
Query: 441 VISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALA 500
++ + E KA + P S + RAS+ + N A+
Sbjct: 74 ----------DLEK-VI--------EFTTKALEIKPDHSKALLRRASANESLGNFTDAMF 114
Query: 501 EINRIL---GFKLA-LECLELRFCFFLALEDYQAAL--CDVQAILTLSPDYRMFEGRVAA 554
+++ + F A +E + R A++ L + + L + +
Sbjct: 115 DLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIF 174
Query: 555 SQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLL 614
+ + + D L +L +Y + +S
Sbjct: 175 DSHLEVSSVNTSSN--YDTAYALLSD--------ALQRLYSATDEGYLVANDLLTKS--- 221
Query: 615 LRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAF 674
+ + + + + + L Y G + ++ + +ESI + + ++
Sbjct: 222 --TDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSY 279
Query: 675 FLKAYALADSSQDSSCSSTVVSLLEDALKC--------PSDRLRKGQALNNLGSVYVDCG 726
A LAD ++ K P + G +Y
Sbjct: 280 IFLALTLADKEN-----------SQEFFKFFQKAVDLNPEY----PPTYYHRGQMYFILQ 324
Query: 727 QLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKR 784
A + + A + + + LA + + + T + + K
Sbjct: 325 DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFF 384
Query: 785 SE-YCDR---ELTRADLEMVTQLDP----------------LRVYPYRYRAAVLMDSHKE 824
+E DR + ++ +L+ + + +D K
Sbjct: 385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKF 444
Query: 825 NEAIAELSRAIAFKADLHLLHL-RAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHS 882
N AI L++A + A + A+ + + E L+ +
Sbjct: 445 NAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATT 503
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 5e-06
Identities = 34/251 (13%), Positives = 60/251 (23%), Gaps = 63/251 (25%)
Query: 698 LEDALKC--------PSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI--RHTRAH 747
+ PS R L N G+ + + A Y A+++ +
Sbjct: 3 HMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFY 62
Query: 748 QGLARVHFLKNNKTTAYEEMTKLIK------KARNN-ASAYEKRSEY------------- 787
++ + + E TK ++ KA ASA E +
Sbjct: 63 SNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLN 122
Query: 788 ----------------------CDRELTRADLEMVTQLDP--------LRVYPYRYRAAV 817
E D +Q+ P ++ +
Sbjct: 123 GDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182
Query: 818 LMDSHKENEAIAELSRAIAF---KADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPND 874
+ S + A A LS A+ D L + T L + N
Sbjct: 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENA 242
Query: 875 QEMLELHSRVY 885
L +
Sbjct: 243 ALALCYTGIFH 253
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 52/470 (11%), Positives = 111/470 (23%), Gaps = 95/470 (20%)
Query: 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAG---HIYSIAGLARLGYIKGHKLW---AYEKL 438
A + + +A G L R + K+ +
Sbjct: 95 ALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDE 154
Query: 439 NSVISSVTPLGWMYQERSLY------------CEGDKRWEDLDKATALDPTLSYPYMYRA 486
+ + ++ D + L A + + A
Sbjct: 155 GRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVA 214
Query: 487 SSLMTK--QNVEAALAEINRILGFKLAL-ECLELRFCFFLALEDYQAALCDVQAILTLSP 543
+ L+TK + L+ + L F + A +Q + L P
Sbjct: 215 NDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHP 274
Query: 544 DYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQM-LESDAP 602
+ A + +Q ++ +
Sbjct: 275 TPNSYIFL-------------------ALTLADKENSQEFFKF-------FQKAVDLNPE 308
Query: 603 KGVLYFRQSLLLLRLNCPEAAM----RSLQLARQHAASDHERLVYEGWILYDTSHCEEGL 658
Y+ + + L + A ++ L ++ + +L +LY E
Sbjct: 309 YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYP-YIQL---ACLLYKQGKFTESE 364
Query: 659 RKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKC--------PSD-- 707
E+ + E A L D + A+K
Sbjct: 365 AFFNETKLKFPTLPEVPTFFAEILTDRGD-----------FDTAIKQYDIAKRLEEVQEK 413
Query: 708 ----------RLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI--RHTRAHQGLARVHF 755
+ ++ +D + + A + A ++ R +A GLA++
Sbjct: 414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKL 473
Query: 756 LKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDP 805
A E AR + + E + + + DP
Sbjct: 474 QMEKIDEAIELFEDSAILARTMDEKLQATT---FAEAAKIQKRL--RADP 518
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 77.5 bits (191), Expect = 6e-15
Identities = 44/449 (9%), Positives = 85/449 (18%), Gaps = 60/449 (13%)
Query: 448 LGWMYQERSLYCEGDKRWED--LDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRI 505
L + E W + L P + V+ L + +
Sbjct: 39 LKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQA 98
Query: 506 LGFKLAL-ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREH 564
G + ALE Q L + L+P+ V A H ++
Sbjct: 99 HGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQ------VVAIASHDGGKQA 152
Query: 565 IDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAM 624
++ L + Q + V L + +
Sbjct: 153 LETVQAL---LPVLC---------------QAHGLTPEQVVAIASNGGGKQALETVQRLL 194
Query: 625 RSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK-RSFEAFFLKAYALAD 683
L A + G + L ++ + + A
Sbjct: 195 PVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQA 254
Query: 684 SSQDSSCSSTVVSLLEDALKC--------PSDRLRKGQALNNLGSVYVDCGQLDLAADCY 735
++ L P A+ + +
Sbjct: 255 LET-----------VQRLLPVLCQAHGLTPQQ----VVAIASNSGGKQALETVQRLLPVL 299
Query: 736 SNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELT 793
A + A + + A + L
Sbjct: 300 CQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHD-GGKQALE 358
Query: 794 R-----ADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHL-LHLR 847
L L P +V + L +A + + +
Sbjct: 359 TVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASH 418
Query: 848 AAFHEHTGDVLGALRDCRAALSVDPNDQE 876
+ V L A + P
Sbjct: 419 DGGKQALETVQRLLPVLCQAHGLTPQQVV 447
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 64.8 bits (158), Expect = 7e-11
Identities = 17/171 (9%), Positives = 32/171 (18%), Gaps = 9/171 (5%)
Query: 713 QALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKL 770
A+ + G + A + A + +
Sbjct: 311 VAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQA 370
Query: 771 IKKARNNASAYEKRSEYCDRELTR-----ADLEMVTQLDPLRVYPYRYRAAVLMDSHKEN 825
A + L L L P +V
Sbjct: 371 HGLTPEQVVAIASNG-GGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQ 429
Query: 826 EAIAELSRAIAFKADLHL-LHLRAAFHEHTGDVLGALRDCRAALSVDPNDQ 875
+ L +A + + ++ L AL+ ND
Sbjct: 430 RLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDH 480
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 7e-15
Identities = 27/172 (15%), Positives = 52/172 (30%), Gaps = 12/172 (6%)
Query: 714 ALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKLI 771
LNN + + G+ + A ++A++ ++ +++ N ++ K I
Sbjct: 40 YLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTI 99
Query: 772 K------KARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKEN 825
+ A K E E ++P + R
Sbjct: 100 EYYQKSLTEHRTADILTKLRNA---EKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP 156
Query: 826 EAIAELSRAIAFKADLHLLHL-RAAFHEHTGDVLGALRDCRAALSVDPNDQE 876
A+ + I + + RAA A+ DC A+ DPN
Sbjct: 157 NAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVR 208
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 1e-10
Identities = 35/253 (13%), Positives = 70/253 (27%), Gaps = 31/253 (12%)
Query: 639 ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLL 698
++ EG Y +E + ++ ++ + +A A + +
Sbjct: 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGE-----------Y 54
Query: 699 EDALKC--------PSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI--RHTRAHQ 748
E A+ R + + G ++ + H+
Sbjct: 55 ETAISTLNDAVEQGREMR----ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHR 110
Query: 749 GLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKR-SEYCDR-ELTRA--DLEMVTQLD 804
A + N ++ A EY + + A + +
Sbjct: 111 -TADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA 169
Query: 805 PLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHL-RAAFHEHTGDVLGALRD 863
P Y RAA L EAIA+ ++AI + ++ +A + AL
Sbjct: 170 PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALET 229
Query: 864 CRAALSVDPNDQE 876
AA + D
Sbjct: 230 LDAARTKDAEVNN 242
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 1e-06
Identities = 33/248 (13%), Positives = 58/248 (23%), Gaps = 53/248 (21%)
Query: 602 PKGVLYFRQSLLLLRLNCPEAAM----RSLQLARQHAASDHERLVYEGWILYDTSHCEEG 657
++ E A+ +++ R+ A +
Sbjct: 36 KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVI----SKSFARIGNAYHK 91
Query: 658 LRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLR----KGQ 713
L +++I+ + A L E LK K +
Sbjct: 92 LGDLKKTIEYYQKSLTEHRTADILTKLRN-----------AEKELKKAEAEAYVNPEKAE 140
Query: 714 ALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKK 773
G Y A Y+ +K Y
Sbjct: 141 EARLEGKEYFTKSDWPNAVKAYTEMIKR---------------APEDARGY--------- 176
Query: 774 ARNN-ASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELS 832
+N A+A K + AD + DP V Y +A + + A+ L
Sbjct: 177 --SNRAAALAKLMSF---PEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD 231
Query: 833 RAIAFKAD 840
A A+
Sbjct: 232 AARTKDAE 239
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 2e-06
Identities = 30/192 (15%), Positives = 53/192 (27%), Gaps = 33/192 (17%)
Query: 607 YFRQSLLLLRLNCPEAAMRSLQLA---RQHAASDHERLVYEGWILYDTSHCEEGLRKAEE 663
Y S R+ + L+ Q + ++H IL + E+ L+KAE
Sbjct: 75 YKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT----ADILTKLRNAEKELKKAEA 130
Query: 664 SIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKC--------PSDRLRKGQA 714
+ E L+ S +A+K P D +
Sbjct: 131 EAYVNPEKAEEARLEGKEYFTKSD-----------WPNAVKAYTEMIKRAPED----ARG 175
Query: 715 LNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKLIK 772
+N + A + A++ RA+ A +A E +
Sbjct: 176 YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235
Query: 773 KARNNASAYEKR 784
K + R
Sbjct: 236 KDAEVNNGSSAR 247
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 7e-15
Identities = 54/397 (13%), Positives = 117/397 (29%), Gaps = 39/397 (9%)
Query: 466 EDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRIL----GFKLALECLELRFCF 521
A DP Y RA+ + +AAL ++ +++ F A L+
Sbjct: 47 SQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAAR--LQRGHLL 104
Query: 522 FLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRW 581
L A D + +L +P + A + E + A +
Sbjct: 105 -LKQGKLDEAEDDFKKVLKSNPSENEEK---EAQSQLIKSDEMQRLRSQALNAFGS-GDY 159
Query: 582 SSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERL 641
++ ++ + ++LE L ++ ++ P A+ L+ A + + E
Sbjct: 160 TAA-----IAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAF 214
Query: 642 VYEGWILYDTSHCEEGLRKAEESIQMK---------RSFEAFFLKAYALADSSQDSSCSS 692
+ Y E L + E +++ K A+ +
Sbjct: 215 YKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYT 274
Query: 693 TVVSLLEDALKC-PSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQG 749
S E +K PS ++ + + + A S L++ + A +
Sbjct: 275 DATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKD 334
Query: 750 LARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYC--DRELTRADLEMVTQLDPLR 807
A + ++ A ++ + N+ E + ++ + D + +
Sbjct: 335 RAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNA 394
Query: 808 VYP-----YRYRAAVLMDSHKENEAIAELSRAIAFKA 839
YR A + E + A K
Sbjct: 395 KKQEIIKAYRKLAL----QWHPDNFQNEEEKKKAEKK 427
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 2e-13
Identities = 42/270 (15%), Positives = 87/270 (32%), Gaps = 48/270 (17%)
Query: 634 AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK-RSFEAFFLKAYALADSSQDSSCSS 692
+ +D E+ + G L + L + ++ ++ A++ +A +
Sbjct: 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGK------ 75
Query: 693 TVVSLLEDALKC--------PSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT 744
+ AL A G + + G+LD A D + LK
Sbjct: 76 -----SKAALPDLTKVIQLKMDF----TAARLQRGHLLLKQGKLDEAEDDFKKVLK---- 122
Query: 745 RAHQGLARVHFLKNNKTTAYEEMTKLIK-----KARNNASAYEKRSEYCDRELTRADLEM 799
++ E ++LIK + R+ A +Y A L+
Sbjct: 123 -----------SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDY---TAAIAFLDK 168
Query: 800 VTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLH-LLHLRAAFHEHTGDVL 858
+ ++ RA + + +AI++L A K D + + + GD
Sbjct: 169 ILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHE 228
Query: 859 GALRDCRAALSVDPNDQEMLELHSRVYSHE 888
+L + R L +D + + + +V
Sbjct: 229 LSLSEVRECLKLDQDHKRCFAHYKQVKKLN 258
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 2e-13
Identities = 47/302 (15%), Positives = 95/302 (31%), Gaps = 48/302 (15%)
Query: 607 YFRQSLLLLRLNCPEAAMRSLQLARQ---------------HAASDHERLVYEGWILYDT 651
++ LLL+ + A + + + + +RL + + +
Sbjct: 97 RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGS 156
Query: 652 SHCEEGLRKAEESIQMK-RSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLR 710
+ ++ +++ E L+A + +S L+ A K +D
Sbjct: 157 GDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRK----AISDLKAASKLKNDNT- 211
Query: 711 KGQALNNLGSVYVDCGQLDLAADCYSNALKI--RHTRAHQGLARVHFLKNNKTTAYEEMT 768
+A + ++Y G +L+ LK+ H R +V
Sbjct: 212 --EAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV--------------- 254
Query: 769 KLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDP----LRVYPYRYRAAVLMDSHKE 824
K + K +A + Y + E V + +P V K
Sbjct: 255 KKLNKLIESAEELIRDGRY---TDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKP 311
Query: 825 NEAIAELSRAIAFKAD-LHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSR 883
EAI S + + D ++ L RA + A++D A + NDQ++ E +
Sbjct: 312 VEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEK 371
Query: 884 VY 885
Sbjct: 372 AQ 373
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 4e-08
Identities = 58/426 (13%), Positives = 114/426 (26%), Gaps = 97/426 (22%)
Query: 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISS 444
A Q G + L + + DEAE F+ + + + A+ IK ++
Sbjct: 96 ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRS------- 148
Query: 445 VTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINR 504
Y LDK + + RA + + A++++
Sbjct: 149 ---QALNAFGSGDY---TAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKA 202
Query: 505 ILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVRE 563
K E + L D++ +L +V+ L L D+ + V++
Sbjct: 203 ASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH------KRCFAHYKQVKK 256
Query: 564 HIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAA 623
A+ ++ + +
Sbjct: 257 LNKLIESAEELIRDGR----------------------------YTDAT--------SKY 280
Query: 624 MRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK-RSFEAFFLKAYALA 682
++ A E +R E +QM+ + A +A A
Sbjct: 281 ESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYL 340
Query: 683 DSSQDSSCSSTVVSLLEDALKC--------PSDRLRKGQALNNLGSVYVDCGQLDLAADC 734
++A++ +D+ Q L Q
Sbjct: 341 IEEM-----------YDEAIQDYETAQEHNENDQ----QIREGLEKAQRLLKQSQKR--D 383
Query: 735 YSNALKIRHT-------RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYE----- 782
Y L ++ +A++ LA + EE K KK + A+A E
Sbjct: 384 YYKILGVKRNAKKQEIIKAYRKLALQW--HPDNFQNEEEKKKAEKKFIDIAAAKEVLSDP 441
Query: 783 -KRSEY 787
R ++
Sbjct: 442 EMRKKF 447
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 9e-08
Identities = 28/149 (18%), Positives = 48/149 (32%), Gaps = 12/149 (8%)
Query: 743 HTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCD--RELTRADLEMV 800
H H +N Y + ++K + D + A
Sbjct: 2 HHHHHHSSGVDLGTENL----YFQSMADVEKHLELGKKLLAAGQLADALSQFHAA----- 52
Query: 801 TQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLRAAF-HEHTGDVLG 859
DP Y RA V + K A+ +L++ I K D L+ G +
Sbjct: 53 VDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDE 112
Query: 860 ALRDCRAALSVDPNDQEMLELHSRVYSHE 888
A D + L +P++ E E S++ +
Sbjct: 113 AEDDFKKVLKSNPSENEEKEAQSQLIKSD 141
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 1e-14
Identities = 45/306 (14%), Positives = 89/306 (29%), Gaps = 56/306 (18%)
Query: 607 YFRQSLLLLRLNCPEAAMRSLQLARQ---------------HAASDHERLVYEGWILYDT 651
++ LLL+ + A + + A + +RL + +D
Sbjct: 74 RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDG 133
Query: 652 SHCEEGLRKAEESIQMK-RSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLR 710
+ + ++ +++ E L+A + A+ +
Sbjct: 134 ADYTAAITFLDKILEVCVWDAELRELRAECFIKEGE-----------PRKAISDLKAASK 182
Query: 711 K----GQALNNLGSVYVDCGQLDLAADCYSNALKI--RHTRAHQGLARVHFLKNNKTTAY 764
+A + ++Y G +L+ LK+ H R +V
Sbjct: 183 LKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV----------- 231
Query: 765 EEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDP----LRVYPYRYRAAVLMD 820
K + K +A + Y + E V + +P V
Sbjct: 232 ----KKLNKLIESAEELIRDGRY---TDATSKYESVMKTEPSVAEYTVRSKERICHCFSK 284
Query: 821 SHKENEAIAELSRAIAFKADLHLLHL-RAAFHEHTGDVLGALRDCRAALSVDPNDQEMLE 879
K EAI S + + D RA + A++D AA + NDQ++ E
Sbjct: 285 DEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIRE 344
Query: 880 LHSRVY 885
+
Sbjct: 345 GLEKAQ 350
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 2e-13
Identities = 37/265 (13%), Positives = 85/265 (32%), Gaps = 42/265 (15%)
Query: 636 SDHERLVYEGWILYDTSHCEEGLRKAEESIQMK-RSFEAFFLKAYALADSSQDSSCSSTV 694
+D E+ + G L + L + ++ ++ A++ +A +
Sbjct: 1 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGK-------- 52
Query: 695 VSLLEDALKC--------PSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI--RHT 744
+ AL A G + + G+LD A D + LK
Sbjct: 53 ---SKAALPDLTKVIALKMDF----TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQ 105
Query: 745 RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLD 804
+ +++ +++ R+ A ++Y L+ + ++
Sbjct: 106 EEKEAESQLVKADE------------MQRLRSQALDAFDGADY---TAAITFLDKILEVC 150
Query: 805 PLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLH-LLHLRAAFHEHTGDVLGALRD 863
RA + + +AI++L A K+D + + + GD +L +
Sbjct: 151 VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSE 210
Query: 864 CRAALSVDPNDQEMLELHSRVYSHE 888
R L +D + + + +V
Sbjct: 211 VRECLKLDQDHKRCFAHYKQVKKLN 235
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 1e-12
Identities = 45/348 (12%), Positives = 103/348 (29%), Gaps = 54/348 (15%)
Query: 466 EDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRIL----GFKLALECLELRFCF 521
A DP Y RA+ + +AAL ++ +++ F A L+
Sbjct: 24 SQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAAR--LQRGHLL 81
Query: 522 FLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYD-- 579
L A D + +L +P + + + + + L +D
Sbjct: 82 -LKQGKLDEAEDDFKKVLKSNPSE------QEEKEAESQLVKADEMQRLRSQALDAFDGA 134
Query: 580 RWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE 639
+++ ++ + ++LE L ++ ++ P A+ L+ A + + + E
Sbjct: 135 DYTAA-----ITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTE 189
Query: 640 RLVYEGWILYDTSHCEEGLRKAEESIQMK-------------RSFEAFFLKAYALADSSQ 686
+ Y E L + E +++ + A L +
Sbjct: 190 AFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGR 249
Query: 687 DSSCSSTVVSLLEDALKC--------PSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNA 738
DA PS ++ + + + A S
Sbjct: 250 -----------YTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEV 298
Query: 739 LKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKR 784
L++ + A + A + ++ A ++ + N+ E
Sbjct: 299 LQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGL 346
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 4e-05
Identities = 27/162 (16%), Positives = 53/162 (32%), Gaps = 14/162 (8%)
Query: 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISS 444
A Q G + L + + DEAE F+ + + A +K ++
Sbjct: 73 ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRS------- 125
Query: 445 VTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINR 504
+ + Y LDK + + RA + + A++++
Sbjct: 126 ---QALDAFDGADY---TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKA 179
Query: 505 ILGFKLAL-ECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545
K E + L D++ +L +V+ L L D+
Sbjct: 180 ASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH 221
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 76.4 bits (188), Expect = 2e-14
Identities = 62/545 (11%), Positives = 142/545 (26%), Gaps = 80/545 (14%)
Query: 367 CFLERLLESAETDRQRLLAF-------HQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIA 419
+++ + A +++L L V +Y A+ L +
Sbjct: 94 ALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACR 153
Query: 420 GLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLS 479
Y+ L ++ + G R +K D L+ ++
Sbjct: 154 ------YLAAFCLVKLYDWQGALNLL---GETNPFRKDEKNANKLLMQ-DGGIKLEASMC 203
Query: 480 YPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAIL 539
Y R N + A +K AL + F L D + L
Sbjct: 204 Y---LRGQVYTNLSNFDRAKEC------YKEALMVDAKCYEAFDQLVSNHLLTADEEWDL 254
Query: 540 TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES 599
L +Y S + + ++ ++ S D++ +
Sbjct: 255 VLKLNY---------STYSKEDAAFLRSL-----YMLKLNKTSHEDELRRAEDYLSSING 300
Query: 600 DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLR 659
L ++ L + + + + + L+++ +
Sbjct: 301 LEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYL 360
Query: 660 KAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK------- 711
+ + + + ++ + +A + K
Sbjct: 361 ISNDLVDRHPEKAVTWLAVGIYYLCVNK-----------ISEARRY----FSKSSTMDPQ 405
Query: 712 -GQALNNLGSVYVDCGQLDLAADCYSNALKI--RHTRAHQGLARVHFLKNNKTTAYEEMT 768
G A + G+ D A Y+ A ++ + L H N A E +
Sbjct: 406 FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQ 465
Query: 769 KLIKKARNNASAY-------EKRSEYCD--RELTRADLEMVTQL---DPLRVYPYRYRAA 816
+ + +S+ A L +V + + +
Sbjct: 466 SSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNA-LLLVKKTQSNEKPWAATWANLGH 524
Query: 817 VLMDSHKENEAIAELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAALSVDPNDQ 875
+ AI L++ + + +H A + H A+ +L++ PN+
Sbjct: 525 AYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEI 584
Query: 876 EMLEL 880
+L
Sbjct: 585 MASDL 589
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 6e-06
Identities = 18/91 (19%), Positives = 28/91 (30%), Gaps = 2/91 (2%)
Query: 698 LEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI--RHTRAHQGLARVHF 755
L K S+ NLG Y D A D + L + H +A V+
Sbjct: 502 LLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYL 561
Query: 756 LKNNKTTAYEEMTKLIKKARNNASAYEKRSE 786
K A + + + + N A +
Sbjct: 562 HKKIPGLAITHLHESLAISPNEIMASDLLKR 592
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 8e-13
Identities = 36/249 (14%), Positives = 71/249 (28%), Gaps = 33/249 (13%)
Query: 645 GWILYDTSHCEEGLRKAEESIQMK-RSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALK 703
Y E R + + + + L + + L+ +
Sbjct: 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRR-----------LDRSAH 54
Query: 704 C--------PSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARV 753
P +A +NLG+VY + GQL A + Y +AL+++ + LA
Sbjct: 55 FSTLAIKQNPLL----AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAA 110
Query: 754 HFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTR-----ADLEMVTQLDPLRV 808
+ A + ++ + + L R A + P
Sbjct: 111 LVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLL-KALGRLEEAKACYLKAIETQPNFA 169
Query: 809 YPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHL-RAAFHEHTGDVLGALRDCRAA 867
+ V + AI +A+ + ++ + A+ A
Sbjct: 170 VAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRA 229
Query: 868 LSVDPNDQE 876
LS+ PN
Sbjct: 230 LSLSPNHAV 238
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 3e-11
Identities = 29/169 (17%), Positives = 49/169 (28%), Gaps = 7/169 (4%)
Query: 715 LNNLGSVYVDCGQLDLAADCYSNALKI--RHTRAHQGLARVHFLKNNKTTAYEEMTKLIK 772
L G + A + +T L+ +HF + T IK
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 773 KARNNASAYEKR----SEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAI 828
+ A AY E + +L P + Y AA L+ + A+
Sbjct: 62 QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAV 121
Query: 829 AELSRAIAFKADLHLLHL-RAAFHEHTGDVLGALRDCRAALSVDPNDQE 876
A+ + DL+ + + G + A A+ PN
Sbjct: 122 QAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAV 170
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 8e-10
Identities = 30/167 (17%), Positives = 54/167 (32%), Gaps = 33/167 (19%)
Query: 713 QALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKL 770
NL VY + G +DLA D Y A++++ A+ N A +E +
Sbjct: 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY----------CNLANALKEKGSV 287
Query: 771 IKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAE 830
+A Y +L P A + + EA+
Sbjct: 288 -AEA---EDCYNT----------------ALRLCPTHADSLNNLANIKREQGNIEEAVRL 327
Query: 831 LSRAIAFKADLHLLHL-RAAFHEHTGDVLGALRDCRAALSVDPNDQE 876
+A+ + H A+ + G + AL + A+ + P +
Sbjct: 328 YRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 374
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 3e-07
Identities = 62/438 (14%), Positives = 122/438 (27%), Gaps = 131/438 (29%)
Query: 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISS 444
L + + D + H A+ AY N
Sbjct: 35 VLLLLSSIHFQCRRLDRSAHFSTLAIK---------------QNPLLAEAY--SN----- 72
Query: 445 VTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINR 504
LG +Y+ER + E A L P Y+ A++L+ ++E A+
Sbjct: 73 ---LGNVYKERGQL---QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVS 126
Query: 505 ILGFKLALECLELRFCFFLA----------LEDYQAALCDVQAILTLSPDYRMFEGRVAA 554
L+ + L + A + P++
Sbjct: 127 ---------ALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF--------- 168
Query: 555 SQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE--SDAPKGVLYFRQSL 612
A W +L ++ A + +F +++
Sbjct: 169 ----------------AVAWS-------------NLGCVFNAQGEIWLA---IHHFEKAV 196
Query: 613 ---------------LLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEG 657
+L + A+ + A + + + Y+ +
Sbjct: 197 TLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLA 256
Query: 658 LRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKC--------PSDR 708
+ +I+++ F +A+ A AL + + +A C P+
Sbjct: 257 IDTYRRAIELQPHFPDAYCNLANALKEKGS-----------VAEAEDCYNTALRLCPTH- 304
Query: 709 LRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEE 766
+LNNL ++ + G ++ A Y AL++ AH LA V + A
Sbjct: 305 ---ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 361
Query: 767 MTKLIKKARNNASAYEKR 784
+ I+ + A AY
Sbjct: 362 YKEAIRISPTFADAYSNM 379
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 9e-13
Identities = 40/259 (15%), Positives = 83/259 (32%), Gaps = 39/259 (15%)
Query: 645 GWILYDTSHCEEGLRKAEESIQMK-RSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALK 703
L+ ++ E + + K S + +A + ++ + A K
Sbjct: 10 ADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAK-----------YDLAQK 58
Query: 704 CPSDRLRK--------GQALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARV 753
+ G + + GQ LA Y A+ + +
Sbjct: 59 D-IETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSY 117
Query: 754 HFLKNNKTTAYEEMTKLIKKARNNASAYEKR--SEYCDRELTRA--DLEMVTQLDPLRVY 809
+ K N A + M K I+ + + + + Y ++E +A V +L P
Sbjct: 118 FYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYI 177
Query: 810 PYRYRAAV---LMDSHKENEAIAELSRAI--------AFKADLHLLHL-RAAFHEHTGDV 857
Y +RA K+ A + I +K +L + A ++ D
Sbjct: 178 GYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237
Query: 858 LGALRDCRAALSVDPNDQE 876
+ A + L++DP +++
Sbjct: 238 VKADAAWKNILALDPTNKK 256
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 9e-11
Identities = 16/173 (9%), Positives = 40/173 (23%), Gaps = 10/173 (5%)
Query: 714 ALNNLGSVYVDCGQLDLAADCYSNALKI--RHTRAHQGLARVHFLKNNKTTA---YEEMT 768
A + ++ + A ++ A E
Sbjct: 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYF 64
Query: 769 KLIKKARNNASAYEKR----SEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKE 824
+ + ++ +E + L + D R+ Y + +
Sbjct: 65 SKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNF 124
Query: 825 NEAIAELSRAIAFKADLHLLHL-RAAFHEHTGDVLGALRDCRAALSVDPNDQE 876
AI + + I + + + + + A L + PN
Sbjct: 125 PLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYI 177
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 69.5 bits (169), Expect = 3e-12
Identities = 37/172 (21%), Positives = 62/172 (36%), Gaps = 7/172 (4%)
Query: 713 QALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKL 770
+LNNL ++ + G ++ A Y AL++ AH LA V + A +
Sbjct: 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 69
Query: 771 IKKARNNASAYEKR----SEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENE 826
I+ + A AY E D + Q++P + A++ DS E
Sbjct: 70 IRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPE 129
Query: 827 AIAELSRAIAFKADLHLLHLRAAFH-EHTGDVLGALRDCRAALSVDPNDQEM 877
AIA A+ K D + A + D + +S+ + E
Sbjct: 130 AIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEK 181
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 1e-10
Identities = 35/269 (13%), Positives = 71/269 (26%), Gaps = 47/269 (17%)
Query: 621 EAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAY 679
A+ + ++ D EG + E +I EA+
Sbjct: 48 SASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGI 107
Query: 680 ALADSSQDSSCSSTVVSLLEDALKCPSDRLRK--------GQALNNLGSVYVDCGQLDLA 731
A++ + A+ L++ +AL L Y + A
Sbjct: 108 TQAENEN-----------EQAAIVA----LQRCLELQPNNLKALMALAVSYTNTSHQQDA 152
Query: 732 ADCYSNALKI--RHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCD 789
+ N +K ++ + L + + + + L A + + D
Sbjct: 153 CEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID 212
Query: 790 RELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR-- 847
+L + S + N AI + A+ + + + L R
Sbjct: 213 PDL------------------QTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLG 254
Query: 848 AAFHEHTGDVLGALRDCRAALSVDPNDQE 876
A A+ AL + P
Sbjct: 255 ATLANG-DRSEEAVEAYTRALEIQPGFIR 282
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 7e-07
Identities = 35/283 (12%), Positives = 75/283 (26%), Gaps = 65/283 (22%)
Query: 621 EAAMRSLQLARQ---HAASDHERLVYEGWI-LYDTSHCEEGLRKAEESIQMK-----RSF 671
E A +++ + ++ E + WI + + + +E+ + +
Sbjct: 6 ERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDW 65
Query: 672 EAFFLKAYALADSSQDSSCSSTVVSLLEDALKC--------PSDRLRKGQALNNLGSVYV 723
F + L + P D +A LG
Sbjct: 66 PGAFEEGLKRLKEGD-----------LPVTILFMEAAILQDPGD----AEAWQFLGITQA 110
Query: 724 DCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAY 781
+ A L+++ + +A LA + +++ A E + IK+
Sbjct: 111 ENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLV 170
Query: 782 EKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL 841
+++ + R + +DS A D
Sbjct: 171 ------KNKKGSPGLTR-------------RMSKS-PVDSSVLEGVKELYLEAAHQNGD- 209
Query: 842 HLLHLRAAFHEHTGDVLG-------ALRDCRAALSVDPNDQEM 877
+ G + A+ AAL+V P D +
Sbjct: 210 ---MIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSL 249
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 18/148 (12%), Positives = 40/148 (27%), Gaps = 34/148 (22%)
Query: 716 NNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKLIKK 773
LG ++ G+ + A D ++ AL +R N + ++
Sbjct: 217 TGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLW----------NRLGATLANGDRS-EE 265
Query: 774 ARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSR 833
A AY + ++ P + ++ EA++
Sbjct: 266 A---VEAYTR----------------ALEIQPGFIRSRYNLGISCINLGAYREAVSNFLT 306
Query: 834 AIAFKADLHLLH--LRAAFHEHTGDVLG 859
A++ + A + L
Sbjct: 307 ALSLQRKSRNQQQVPHPAISGNIWAALR 334
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 2e-10
Identities = 40/199 (20%), Positives = 62/199 (31%), Gaps = 15/199 (7%)
Query: 699 EDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI--RHTRAHQGLARVHFL 756
++ LK R A LG Y+ G + A AL+I AH LA V
Sbjct: 24 QNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQT 83
Query: 757 KNNKTTAYEEMTKLIKKARNNASAY---------EKRSEYCDRELTRADLEMVTQLDPLR 807
+ A EE K + NA +KR E + L A L P R
Sbjct: 84 EMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEA---SQDTLYPER 140
Query: 808 VYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHL-RAAFHEHTGDVLGALRDCRA 866
+ V + K +A +++ + + L A + + A +
Sbjct: 141 SRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDL 200
Query: 867 ALSVDPNDQEMLELHSRVY 885
+ L L R+
Sbjct: 201 FAQGGGQNARSLLLGIRLA 219
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 2e-10
Identities = 31/250 (12%), Positives = 67/250 (26%), Gaps = 41/250 (16%)
Query: 645 GWILYDTSHCEEGLRKA-EESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDAL 702
G H E R+ ++ +++++ A+ ++ A S+ + A+
Sbjct: 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESE-----------HDQAM 145
Query: 703 KCPSD--RLRKG--QALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFL 756
+L KG + +G Y LA +S AL I
Sbjct: 146 AAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVM--------- 196
Query: 757 KNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAA 816
+ + + ++ ++ L +
Sbjct: 197 -HEVGVVAFQNGE-----------WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGH 244
Query: 817 VLMDSHKENEAIAELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAALSVDPNDQ 875
V K EA+ +A+ + H G+ A+ AL + +D
Sbjct: 245 VCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDT 304
Query: 876 EMLELHSRVY 885
+ +
Sbjct: 305 FSVTMLGHCI 314
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 2e-09
Identities = 27/174 (15%), Positives = 49/174 (28%), Gaps = 8/174 (4%)
Query: 713 QALNNLGSVYVDCGQLDLAADCYSNALKI--RHTRAHQGLARVHFLKNNKTTAYEEMTKL 770
+ +L + + S ++ H N + KL
Sbjct: 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKL 82
Query: 771 IKKARNNASAYEKRSEY-----CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKEN 825
+ +N ++ Y E R L T L+ + + +
Sbjct: 83 VDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHD 142
Query: 826 EAIAELSRAIAFKADLHLLHL-RAAFHEHTGDVLGALRDCRAALSVDPNDQEML 878
+A+A A HL L + T + A R ALS+ P D ++
Sbjct: 143 QAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVM 196
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 1e-05
Identities = 26/173 (15%), Positives = 50/173 (28%), Gaps = 33/173 (19%)
Query: 612 LLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671
L N + A R A A D + G + + + + +
Sbjct: 167 LEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQ-------NGEWKTAE------ 213
Query: 672 EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLA 731
+FL A + + + LNNLG V + A
Sbjct: 214 -KWFLDALEKIKAIGNEVTVD-----------------KWEPLLNNLGHVCRKLKKYAEA 255
Query: 732 ADCYSNALKI--RHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYE 782
D + AL + ++ + + +H L N A + + R++ +
Sbjct: 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVT 308
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 62.7 bits (152), Expect = 5e-10
Identities = 43/424 (10%), Positives = 84/424 (19%), Gaps = 49/424 (11%)
Query: 466 EDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLAL 525
L +A L P + V+ L + + G AL
Sbjct: 349 PVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQAL 408
Query: 526 EDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVD 585
E Q L + L+PD V A H ++ ++ L +
Sbjct: 409 ETVQRLLPVLCQAHGLTPDQ------VVAIASHDGGKQALETVQRL---LPVLC------ 453
Query: 586 DIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEG 645
Q + V L + + L A +
Sbjct: 454 ---------QTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNI 504
Query: 646 WILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKC 704
+ + L ++ + A + ++ L
Sbjct: 505 GGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQA-----------LETVQRLLPV 553
Query: 705 PSDRLR----KGQALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKN 758
+ A+ + G + A + A
Sbjct: 554 LCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALE 613
Query: 759 NKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTR-----ADLEMVTQLDPLRVYPYRY 813
+ + A + L L L P +V
Sbjct: 614 TVQRLLPVLCQAHGLTPAQVVAIASHDGGK-QALETVQRLLPVLCQAHGLTPDQVVAIAS 672
Query: 814 RAAVLMDSHKENEAIAELSRAIAFKADLHL-LHLRAAFHEHTGDVLGALRDCRAALSVDP 872
+ L +A + + + + V L A + P
Sbjct: 673 NGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTP 732
Query: 873 NDQE 876
+
Sbjct: 733 DQVV 736
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 60.4 bits (146), Expect = 2e-09
Identities = 46/421 (10%), Positives = 84/421 (19%), Gaps = 43/421 (10%)
Query: 466 EDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL-ECLELRFCFFLA 524
L +A L P + ++ L + + G + A
Sbjct: 213 PVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQA 272
Query: 525 LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSV 584
LE Q L + L+PD VA + + L+ R
Sbjct: 273 LETVQRLLPVLCQAHGLTPDQ-----VVAIASHGGGKQA-----------LETVQR---- 312
Query: 585 DDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYE 644
L V+ Q + V L + + L A +
Sbjct: 313 ----LLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASN 368
Query: 645 GWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALK 703
G + L ++ + A A + L A
Sbjct: 369 GGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQALETVQRLLPV-----LCQAHG 423
Query: 704 CPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKT 761
D++ A+ + + + A
Sbjct: 424 LTPDQV---VAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQ 480
Query: 762 TAYEEMTKLIKKARNNASAYEKRSEYCDRELTR-----ADLEMVTQLDPLRVYPYRYRAA 816
+ + + A + L L L P +V
Sbjct: 481 QLLPVLCQAHGLTPDQVVAIASNIG-GKQALATVQRLLPVLCQAHGLTPDQVVAIASNGG 539
Query: 817 VLMDSHKENEAIAELSRAIAFKADLHLLHL-RAAFHEHTGDVLGALRDCRAALSVDPNDQ 875
+ L +A D + + V L A +
Sbjct: 540 GKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQV 599
Query: 876 E 876
Sbjct: 600 V 600
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 57.0 bits (137), Expect = 2e-08
Identities = 47/421 (11%), Positives = 87/421 (20%), Gaps = 43/421 (10%)
Query: 466 EDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLA 524
L +A L P + V+ L + + G + + A
Sbjct: 281 PVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQA 340
Query: 525 LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSV 584
LE Q L + L+PD V A I + L+ R
Sbjct: 341 LETVQRLLPVLCQAHGLTPDQ------VVA----------IASNGGGKQALETVQR---- 380
Query: 585 DDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYE 644
L V+ Q P V+ + L + + L A +
Sbjct: 381 ----LLPVLCQAHGLT-PDQVVAIASNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASH 435
Query: 645 GWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALK 703
+ L ++ + + A V LL +
Sbjct: 436 DGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALET-------VQQLLPVLCQ 488
Query: 704 CPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKT 761
+ A+ + + A + A
Sbjct: 489 AHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQ 548
Query: 762 TAYEEMTKLIKKARNNASAYEKRSEYCDRELTR-----ADLEMVTQLDPLRVYPYRYRAA 816
+ + + A + L L L ++V
Sbjct: 549 RLLPVLCQAHGLTPDQVVAIASNG-GGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIG 607
Query: 817 VLMDSHKENEAIAELSRAIAFKADLHLLHL-RAAFHEHTGDVLGALRDCRAALSVDPNDQ 875
+ L +A + + V L A + P+
Sbjct: 608 GKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQV 667
Query: 876 E 876
Sbjct: 668 V 668
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 5e-08
Identities = 16/174 (9%), Positives = 33/174 (18%), Gaps = 9/174 (5%)
Query: 713 QALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKL 770
A+ + + A + A + +
Sbjct: 227 VAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQA 286
Query: 771 IKKARNNASAYEKRSEYCDRELTR-----ADLEMVTQLDPLRVYPYRYRAAVLMDSHKEN 825
+ A + L L L P +V
Sbjct: 287 HGLTPDQVVAIASHGG-GKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQ 345
Query: 826 EAIAELSRAIAFKADLHL-LHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEML 878
+ L +A D + + + V L A + P+ +
Sbjct: 346 RLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAI 399
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 52.0 bits (124), Expect = 8e-07
Identities = 16/172 (9%), Positives = 32/172 (18%), Gaps = 9/172 (5%)
Query: 713 QALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKL 770
A+ + + A + A + +
Sbjct: 193 VAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQA 252
Query: 771 IKKARNNASAYEKRSEYCDRELTR-----ADLEMVTQLDPLRVYPYRYRAAVLMDSHKEN 825
+ A + L L L P +V
Sbjct: 253 HGLPPDQVVAIASNI-GGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQ 311
Query: 826 EAIAELSRAIAFKADLHL-LHLRAAFHEHTGDVLGALRDCRAALSVDPNDQE 876
+ L +A D + + + V L A + P+
Sbjct: 312 RLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVV 363
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 8e-06
Identities = 42/425 (9%), Positives = 81/425 (19%), Gaps = 50/425 (11%)
Query: 466 EDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLA 524
L + L P + V+ L + + G + + A
Sbjct: 450 PVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQA 509
Query: 525 LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSV 584
L Q L + L+PD V A I + L+ R V
Sbjct: 510 LATVQRLLPVLCQAHGLTPDQ------VVA----------IASNGGGKQALETVQRLLPV 553
Query: 585 DDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYE 644
Q + V L + + L A +
Sbjct: 554 LC--------QAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASN 605
Query: 645 GWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALK 703
+ L ++ + + A ++ L
Sbjct: 606 IGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALET-----------VQRLLP 654
Query: 704 CPSDRLR----KGQALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLK 757
+ A+ + G + A + A
Sbjct: 655 VLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQAL 714
Query: 758 NNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTR-----ADLEMVTQLDPLRVYPYR 812
+ + + A + L L L P +V
Sbjct: 715 ETVQRLLPVLCQAHGLTPDQVVAIASNGGG-KQALETVQRLLPVLCQAHGLTPAQVVAIA 773
Query: 813 YRAAVLMDSHKENEAIAELSRAIAFK-ADLHLLHLRAAFHEHTGDVLGALRDCRAALSVD 871
+ L + A + + + V L A +
Sbjct: 774 SNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLT 833
Query: 872 PNDQE 876
+
Sbjct: 834 QDQVV 838
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 61.9 bits (150), Expect = 5e-10
Identities = 35/246 (14%), Positives = 72/246 (29%), Gaps = 25/246 (10%)
Query: 648 LYDTSHCEEGLRKAEESIQMKR--------SFEAFFLKAYALADSSQDSSCSSTVVSLLE 699
L S+ + ++ +I R + L A L ++ L+E
Sbjct: 178 LAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVE 237
Query: 700 DALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNN 759
+AL+ L + Y + D A + AL+ A +L
Sbjct: 238 EALEKAPG---VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNA--------YLHCQ 286
Query: 760 KTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLM 819
Y + R N +++ A L+ + + A++
Sbjct: 287 IGCCYRAKVFQVMNLRENGMYGKRKLLE-LIGHAVAHLKKADEANDNLFRVCSILASLHA 345
Query: 820 DSHKENEAIAELSRAIAFK---ADLHLLHLR-AAFHE-HTGDVLGALRDCRAALSVDPND 874
+ + EA + + + LLHLR F A+ + ++
Sbjct: 346 LADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKS 405
Query: 875 QEMLEL 880
+E ++
Sbjct: 406 REKEKM 411
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 53.8 bits (129), Expect = 2e-07
Identities = 56/498 (11%), Positives = 135/498 (27%), Gaps = 70/498 (14%)
Query: 357 NLDPRSDKTVCFLERLLESAE--TDRQRLLAFHQLGCVRLLRKEYDEA-EHLFEAAVNAG 413
NL + F +++ E + + L ++ L+ + + A E L +A
Sbjct: 23 NLMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQ 82
Query: 414 HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATA 473
++ R G+ W Y + G + + + E
Sbjct: 83 QEHADQAEIRSLVTWGNYAWVYYHM----------GRLSDVQIYVDKVKHVCEKFSSPYR 132
Query: 474 LDPTLSYPYMYRASSLMTKQNVEAALAEINRIL----GFKLALECLELRFCFFLALEDYQ 529
++ E A + L L + Q
Sbjct: 133 IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQ 192
Query: 530 AALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 589
A+ ++ + L+PD + L + + + + +L +
Sbjct: 193 NAIDPLRQAIRLNPDNQY-----LKVLLALKLHKMREEGEEEGEGEKLVE---------- 237
Query: 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILY 649
+ LE + + R + P+ A+ L+ A ++ ++
Sbjct: 238 -----EALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAY---------- 282
Query: 650 DTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRL 709
HC+ G + Q+ E L + + V+ L+ A + +
Sbjct: 283 --LHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHA------VAHLKKADEANDNLF 334
Query: 710 RKGQALNNLGSVYVDCGQLDLAADCYSNALKI-----RHTRAHQGLARVH-FLKNNKTTA 763
R + L S++ Q + A + H + + A
Sbjct: 335 R---VCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKA 391
Query: 764 YEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHK 823
+ +K + + + + + + +M + A + + K
Sbjct: 392 IHHFIEGVKINQKSREKEKMKDKL------QKIAKMRLSKNGADSEALHVLAFLQELNEK 445
Query: 824 ENEAIAELSRAIAFKADL 841
+A + R + + +
Sbjct: 446 MQQADEDSERGLESGSLI 463
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 3e-06
Identities = 29/178 (16%), Positives = 51/178 (28%), Gaps = 18/178 (10%)
Query: 713 QALNNLGSVYVDC----GQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEE 766
L + AL+ T + A+ + K+ A E
Sbjct: 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIEL 269
Query: 767 MTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENE 826
+ K ++ NNA + ++ V Q+ LR + +L
Sbjct: 270 LKKALEYIPNNAYLH--------CQIGCCYRAKVFQVMNLRENGMYGKRKLL---ELIGH 318
Query: 827 AIAELSRAIAFKADLHLLHL-RAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSR 883
A+A L +A +L + A+ H A + S + LH R
Sbjct: 319 AVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLR 376
|
| >3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312 | Back alignment and structure |
|---|
Score = 60.7 bits (147), Expect = 6e-10
Identities = 33/165 (20%), Positives = 62/165 (37%), Gaps = 16/165 (9%)
Query: 153 PIDIASHLQTDINVAGSHETVSMSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLN 212
+A L + + + + ++ + + AA S FSAM
Sbjct: 158 ECRLADELG------------GLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFE 205
Query: 213 GSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKD 272
ES +++ N++ P + + F TG + ++L A+K+ ERLK
Sbjct: 206 HEMEESKKNRVEI--NDVEPEVFKEMMCFIYTGKAP-NLDKMADDLLAAADKYALERLKV 262
Query: 273 ACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPD 317
C+ L S + S E+A E++ A ++ L + D
Sbjct: 263 MCEDALCSNL-SVENAAEILILADLHSADQLKTQAVDFINYHATD 306
|
| >3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Length = 172 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 7e-10
Identities = 31/144 (21%), Positives = 59/144 (40%), Gaps = 4/144 (2%)
Query: 174 SMSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPS 233
+ + + + ++ + + AA S FSAM ES +++ N++ P
Sbjct: 27 GLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEI--NDVEPE 84
Query: 234 GLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMG 293
+ + F TG + ++L A+K+ ERLK C+ L S + S E+A E++
Sbjct: 85 VFKEMMCFIYTGKAP-NLDKMADDLLAAADKYALERLKVMCEDALCSNL-SVENAAEILI 142
Query: 294 YAIEENSPVLAVSCLQVFLRELPD 317
A ++ L + D
Sbjct: 143 LADLHSADQLKTQAVDFINYHATD 166
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 8e-10
Identities = 38/268 (14%), Positives = 77/268 (28%), Gaps = 48/268 (17%)
Query: 625 RSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK-RSFEAFFLKAYALAD 683
+ Q ++ DH + EG + E ++Q + EA+ A+
Sbjct: 51 KGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAE 110
Query: 684 SSQDSSCSSTVVSLLEDALKCPSDRLRK--------GQALNNLGSVYVDCGQLDLAADCY 735
+ Q A+ LR+ AL L + + A +
Sbjct: 111 NEQ-----------ELLAISA----LRRCLELKPDNQTALMALAVSFTNESLQRQACEIL 155
Query: 736 SNALKIRHTRAH-QGLARVHFLKNNKTTAYEEMTKLIKKARNN--ASAYEKRSEYCDREL 792
+ L+ AH A + + L+ + +
Sbjct: 156 RDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLA--------- 206
Query: 793 TRADLEMVTQLDPLRVYPYRY--RAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR--A 848
+LDP + P + S + ++A+ + A++ + + +LL + A
Sbjct: 207 -------AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGA 259
Query: 849 AFHEHTGDVLGALRDCRAALSVDPNDQE 876
A+ R AL + P
Sbjct: 260 TLANG-NQSEEAVAAYRRALELQPGYIR 286
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 8e-08
Identities = 27/174 (15%), Positives = 48/174 (27%), Gaps = 28/174 (16%)
Query: 713 QALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKL 770
+A LG+ + Q LA L+++ + A LA ++ + A E +
Sbjct: 99 EAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDW 158
Query: 771 IKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAE 830
++ A E + P + L+ E
Sbjct: 159 LRYTPAYAHLVTPAEE---------------GAGGAGLGPSKRILGSLLSDSLFLEVKEL 203
Query: 831 LSRAIAFKADLHLLHLRAAFHEHTGDVLGALRD-------CRAALSVDPNDQEM 877
A+ + G + + AALSV PND +
Sbjct: 204 FLAAVRLDPT----SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLL 253
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 19/130 (14%), Positives = 37/130 (28%), Gaps = 32/130 (24%)
Query: 713 QALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKL 770
LG ++ G+ D A DC++ AL +R N +
Sbjct: 218 DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLW----------NKLGATLANGNQS 267
Query: 771 IKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAE 830
++A +AY + +L P + ++ EA+
Sbjct: 268 -EEA---VAAYRR----------------ALELQPGYIRSRYNLGISCINLGAHREAVEH 307
Query: 831 LSRAIAFKAD 840
A+ +
Sbjct: 308 FLEALNMQRK 317
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 1e-09
Identities = 28/166 (16%), Positives = 44/166 (26%), Gaps = 16/166 (9%)
Query: 713 QALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKL 770
A N G G+ LA D + L K ++ A E + +
Sbjct: 112 YAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAE-QKLDEKQAKEVLKQH 170
Query: 771 IKKARNNASAYEKR-------SEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHK 823
+K+ + SE E +AD T L Y +
Sbjct: 171 FEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGD 230
Query: 824 ENEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALS 869
+ A A A+A H + L L + L+
Sbjct: 231 LDSATALFKLAVANNVHN------FVEHRYALLELSLLGQDQDDLA 270
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 8e-09
Identities = 30/166 (18%), Positives = 44/166 (26%), Gaps = 32/166 (19%)
Query: 713 QALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKL 770
Q L G +Y G LA + +S AL IR N +
Sbjct: 44 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVF----------NYLGIYLTQAGNF 93
Query: 771 IKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAE 830
+AYE + V +LDP Y + R L ++ A +
Sbjct: 94 -------DAAYE-------------AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDD 133
Query: 831 LSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQE 876
L + L E D A + +Q
Sbjct: 134 LLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQW 179
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 24/138 (17%), Positives = 37/138 (26%), Gaps = 16/138 (11%)
Query: 385 AFHQLGCVRLLRKEYDEAEHLFEAAV--NAGHIYSIAGLARLGYIKGHKLWAYEKLNSVI 442
A G A+ A + + L L K + A E L
Sbjct: 113 AHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY-LAEQKLDEKQAKEVLKQHF 171
Query: 443 SSVTPLGWMYQERSLYCEGDKRW-------EDLDKATALDPTLSYPYMYRASSLMTKQNV 495
W + Y D T+L LS Y ++ ++
Sbjct: 172 EKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDL 231
Query: 496 EAALAEINRILGFKLALE 513
++A A FKLA+
Sbjct: 232 DSATAL------FKLAVA 243
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 2e-09
Identities = 24/168 (14%), Positives = 52/168 (30%), Gaps = 25/168 (14%)
Query: 713 QALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKL 770
+AL L + G ++ A + + + + + AY + +
Sbjct: 40 EALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGY----------MVLSEAYVALYRQ 89
Query: 771 IKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAE 830
+ E+ +++P + R V + ++A A
Sbjct: 90 AEDRERGKGYLEQALSVLKDAE---------RVNPRYAPLHLQRGLVYALLGERDKAEAS 140
Query: 831 LSRAIAFK--ADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQE 876
L +A+A + ++ L + G + AL AL P D +
Sbjct: 141 LKQALALEDTPEIR-SALAELYLSM-GRLDEALAQYAKALEQAPKDLD 186
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 5e-04
Identities = 23/177 (12%), Positives = 48/177 (27%), Gaps = 49/177 (27%)
Query: 713 QALNNLGSVYVDC-----------GQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNN 759
L YV G L+ A +A ++ + H
Sbjct: 74 GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLH----------LQ 123
Query: 760 KTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYP--YRYRAAV 817
+ Y + + KA ++ ++ L+ P A +
Sbjct: 124 RGLVYALLGER-DKA---EASLKQ----------------ALALED---TPEIRSALAEL 160
Query: 818 LMDSHKENEAIAELSRAIAFKADLHLLHL-RAAFHEHTGDVLGALRDCRAALSVDPN 873
+ + +EA+A+ ++A+ L + A+ G A R +
Sbjct: 161 YLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHHHH 217
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 60.6 bits (146), Expect = 2e-09
Identities = 78/510 (15%), Positives = 151/510 (29%), Gaps = 133/510 (26%)
Query: 466 EDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLAL 525
++ D D S+++K+ ++ + + + G L +
Sbjct: 31 DNFDCKDVQDMP---------KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK-----QE 76
Query: 526 EDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDR-WSSV 584
E Q + +V L +Y+ S + E + +++ DR ++
Sbjct: 77 EMVQKFVEEV-----LRINYKFL-----MSPIK---TEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 585 DDIGSLSV--------IYQMLESDAP-------------KGVL-------YFRQSLL--- 613
+V + Q L P K + Y Q +
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183
Query: 614 -----LLRLNCPEAAMRSLQ-LARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667
L N PE + LQ L Q + R + I + LR+ +S
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 668 KRS------------FEAFFLKAYALADSSQDSSCSSTVVSLL--EDALKCPSDRLRKGQ 713
+ + AF L L +++ + + + +L S L +
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILL-TTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 714 ALNNLGSVYVDCGQLDLAAD-CYSN--ALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKL 770
+ L Y+DC DL + +N L I GLA N K +++T +
Sbjct: 303 VKSLLLK-YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT---WDNWKHVNCDKLTTI 358
Query: 771 IKKARNNASAYEKRSEYCD-------------------RELTRADLEMVTQ------LDP 805
I+ + N E R + ++ ++D+ +V L
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 806 LRVYPYRYRA-AVLMDSHKENEAIAELSRAI---------AFKADLHLLHLRAAFHEHTG 855
+ ++ ++ + E L R+I DL +L F+ H G
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478
Query: 856 DVLGALRDCRAALSVDPNDQEMLELHSRVY 885
L++ E + L V+
Sbjct: 479 H---HLKNIEHP--------ERMTLFRMVF 497
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.8 bits (136), Expect = 3e-08
Identities = 90/657 (13%), Positives = 179/657 (27%), Gaps = 197/657 (29%)
Query: 215 FMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN------LLLEILIFANKFCCE 268
F ++ ++ D ++ I+S + + + + L L+ + +
Sbjct: 25 FEDAFVDNFDC--KDVQDMPKSILSKEEIDHIIM--SKDAVSGTLRLFWTLLSKQEEMVQ 80
Query: 269 RLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVEIF 328
+ + R + S E+ P + ++++ + ND ++F
Sbjct: 81 KFVEEVLRINYKFLMSP--------IKTEQRQPSMMT---RMYIEQRDRLYND---NQVF 126
Query: 329 S--HANRQHRSIMVGLASFSLYCLLSEVAMNLDPRSD----------KTVCFLERLLESA 376
+ + +R Y L + + L P + KT L+ L
Sbjct: 127 AKYNVSRLQ-----------PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY- 174
Query: 377 ETDRQRLLAFH----QLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKL 432
Q + F L + E + E + +R + KL
Sbjct: 175 --KVQCKMDFKIFWLNLK-------NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 433 ---WAYEKLNSVISSVTPLGWMYQERSL------YCEGDKR-WEDLD---K--------- 470
+L ++ S Y+ L + + W + K
Sbjct: 226 RIHSIQAELRRLLKS-----KPYE-NCLLVLLNVQ---NAKAWNAFNLSCKILLTTRFKQ 276
Query: 471 -ATALDP-TLSYPYMYRASSLMTKQNVEAALAEINRILGFKL---ALECLELRFCFFLAL 525
L T ++ + S +T V++ L + L L R
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES 336
Query: 526 --------EDYQAALCD-----VQAIL-TLSP-DYR-MFEGRVAASQLHMLVRE--HIDN 567
++++ CD +++ L L P +YR MF+ +L + HI
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD------RLSVF-PPSAHIPT 389
Query: 568 WTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSL 627
++ W + V + + Y ++E + + + L L +L
Sbjct: 390 ILLSLIWFDVIKS--DVMVVVNKLHKYSLVEKQPKESTISIPS--IYLELKVKLENEYAL 445
Query: 628 QLARQHAASDHERLV--YEGWILYDTSHC----EEG---------LRKAEESIQMKRSFE 672
H +V Y +D+ + L+ E + F
Sbjct: 446 ----------HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP-ERMTLFR 494
Query: 673 AFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAA 732
FL D LE ++ A N GS+ QL
Sbjct: 495 MVFL----------D-------FRFLEQKIR------HDSTAWNASGSILNTLQQLKF-- 529
Query: 733 DCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCD 789
Y + + N+ YE + I S+Y D
Sbjct: 530 --Y----------------KPYICDNDPK--YERLVNAILDFLPKIEENLICSKYTD 566
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 4e-07
Identities = 55/302 (18%), Positives = 95/302 (31%), Gaps = 94/302 (31%)
Query: 6 PSDSCKESQL----------NGFN-PQSWLQVERGKLSKLSSHNSSSSSIESFIKVPEPR 54
P + + +G +W V KL+ + IES + V EP
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI---------IESSLNVLEPA 369
Query: 55 IL-PNYK-----PVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLR 108
+ P A I L L + + V KL + SL
Sbjct: 370 EYRKMFDRLSVFPPS-----AHIPTIL-LSLIWFDVIKSDVMVVV------NKLHKYSLV 417
Query: 109 KAWQKASTVHEKLVFGAWLKYEKQGEELIA--DLLINCDKCLQEF-------GPID---- 155
+ K ST+ + +L+ + + E A +++ + F +D
Sbjct: 418 EKQPKESTIS---IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 156 --IASHLQTDINVAGSHETVSMSGDQVLRNVV--FRIHEEKIECDRQKFAALSAPFSAML 211
I HL+ E +++ R V FR E+KI R A +A
Sbjct: 475 SHIGHHLKN----IEHPERMTL-----FRMVFLDFRFLEQKI---RHDSTAWNAS----- 517
Query: 212 NGSFMESLCEDIDLSENNISPSG------LRIISDFSVTGSLNGVTPNLLLEILIFANKF 265
GS + +L + + + I + + I DF L + NL+ +K+
Sbjct: 518 -GSILNTL-QQLKFYKPYICDNDPKYERLVNAILDF-----LPKIEENLIC------SKY 564
Query: 266 CC 267
Sbjct: 565 TD 566
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 3e-09
Identities = 22/168 (13%), Positives = 49/168 (29%), Gaps = 18/168 (10%)
Query: 713 QALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKL 770
+A +LG + + LA ++A + H LA H ++N A +
Sbjct: 56 EAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAW 115
Query: 771 IKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAE 830
+ + + + ++ E
Sbjct: 116 LLSQPQYEQLGSVNLQ---------------ADVDIDDLNVQSEDFFFAAPNEYRECRTL 160
Query: 831 LSRAIAFKADLHLLHL-RAAFHEHTGDVLGALRDCRAALSVDPNDQEM 877
L A+ + LH + + + A + R A+ + P+D ++
Sbjct: 161 LHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQL 208
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 4e-08
Identities = 36/253 (14%), Positives = 69/253 (27%), Gaps = 44/253 (17%)
Query: 637 DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVV 695
HE + EG + ++ E E Q EA+ A++ +
Sbjct: 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEK--------- 70
Query: 696 SLLEDALKCPSDRLRK--------GQALNNLGSVYVDCGQLDLAADCYSNALKIR--HTR 745
A+ L L + + + A L + + +
Sbjct: 71 --DGLAIIA----LNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 124
Query: 746 AHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDP 805
+ A ++ L ++ + A C L A +++P
Sbjct: 125 LG----------SVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAA-----LEMNP 169
Query: 806 LRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR--AAFHEHTGDVLGALRD 863
+ + S+ + A A L RA+ + D L + A AL
Sbjct: 170 NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANG-NRPQEALDA 228
Query: 864 CRAALSVDPNDQE 876
AL ++P
Sbjct: 229 YNRALDINPGYVR 241
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 3e-05
Identities = 21/130 (16%), Positives = 38/130 (29%), Gaps = 32/130 (24%)
Query: 713 QALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKL 770
Q +LG +Y D AA A+++R + N +
Sbjct: 173 QLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLW----------NKLGATLANGNRP 222
Query: 771 IKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAE 830
++A AY + ++P V A + + + A +
Sbjct: 223 -QEA---LDAYNR----------------ALDINPGYVRVMYNMAVSYSNMSQYDLAAKQ 262
Query: 831 LSRAIAFKAD 840
L RAI +
Sbjct: 263 LVRAIYMQVG 272
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 3e-04
Identities = 17/126 (13%), Positives = 41/126 (32%), Gaps = 20/126 (15%)
Query: 713 QALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKL 770
Q N LG+ + + A D Y+ AL I + R +A + + A +++ +
Sbjct: 207 QLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRA 266
Query: 771 IKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAE 830
I + + S R + + + +L ++ +
Sbjct: 267 IYMQVGGTTPTGEASREATRSM------------------WDFFRMLLNVMNRPDLVELT 308
Query: 831 LSRAIA 836
++ +
Sbjct: 309 YAQNVE 314
|
| >4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Length = 145 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 4e-09
Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 15/128 (11%)
Query: 153 PIDIASHLQTDINVAGSHETVSMSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLN 212
+A L + + + + ++ + + AA S FSAM
Sbjct: 9 ECRLADELG------------GLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFE 56
Query: 213 GSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKD 272
ES +++ N++ P + + F TG + ++L A+K+ ERLK
Sbjct: 57 HEMEESKKNRVEI--NDVEPEVFKEMMCFIYTGKAP-NLDKMADDLLAAADKYALERLKV 113
Query: 273 ACDRKLAS 280
C+ L S
Sbjct: 114 MCEDALCS 121
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 1e-08
Identities = 25/165 (15%), Positives = 51/165 (30%), Gaps = 14/165 (8%)
Query: 714 ALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKK 773
+ S ++ GQ A + + + + +++ N + K
Sbjct: 6 EMLQKVSAAIEAGQNGQAVSYFRQTIAL-----NIDRTEMYYWTN----VDKNSEISSKL 56
Query: 774 ARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSR 833
A A AY+K Y + + + Q P V A + + +E +A+ +
Sbjct: 57 ATELALAYKKNRNY---DKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEK 113
Query: 834 AIAFKADLH--LLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQE 876
+ +AD + L ++ L LS Q
Sbjct: 114 ILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQY 158
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 4e-07
Identities = 21/213 (9%), Positives = 56/213 (26%), Gaps = 49/213 (23%)
Query: 639 ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSL 697
+ ++ + + + + ++I + E ++ + ++
Sbjct: 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAY 64
Query: 698 -----LEDALKC--------PSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR-- 742
+ A P++ L + V GQ A Y L++
Sbjct: 65 KKNRNYDKAYLFYKELLQKAPNN----VDCLEACAEMQVCRGQEKDALRMYEKILQLEAD 120
Query: 743 HTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQ 802
+ A+ L ++L + +K+ E ++L
Sbjct: 121 NLAANIFLGNYYYLTAEQ--------------------EKKKLETDYKKL---------S 151
Query: 803 LDPLRVYPYRYRAAVLMDSHKENEAIAELSRAI 835
Y + + + +A L + I
Sbjct: 152 SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVI 184
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 5e-04
Identities = 21/164 (12%), Positives = 45/164 (27%), Gaps = 16/164 (9%)
Query: 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISS 444
Q + + +A F + + + + +K + + S
Sbjct: 6 EMLQKVSAAIEAGQNGQAVSYFRQTIA----------LNIDRTEMYYWTNVDKNSEISSK 55
Query: 445 VTP-LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEIN 503
+ L Y++ Y DK + + P A + + + AL
Sbjct: 56 LATELALAYKKNRNY---DKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYE 112
Query: 504 RILGF--KLALECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545
+IL + L ++L E + L L+
Sbjct: 113 KILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM 156
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 53.6 bits (130), Expect = 3e-08
Identities = 25/170 (14%), Positives = 49/170 (28%), Gaps = 35/170 (20%)
Query: 713 QALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKL 770
+LG YV G +D + +L + + Y ++ K
Sbjct: 43 DVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVA----------TVLGLTYVQVQKY 92
Query: 771 IKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAE 830
A K V + +P+ L + + +EAI
Sbjct: 93 -DLA---VPLLIK----------------VAEANPINFNVRFRLGVALDNLGRFDEAIDS 132
Query: 831 LSRAIAFKADLHLLH--LRAAFHEHTGDVLGALRDCRAALSVDPNDQEML 878
A+ + + +H + ++ + G AL + A +D L
Sbjct: 133 FKIALGLRPNEGKVHRAIAFSYEQM-GRHEEALPHFKKANELDEGASVEL 181
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 5e-08
Identities = 20/167 (11%), Positives = 43/167 (25%), Gaps = 33/167 (19%)
Query: 713 QALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKL 770
A G+VYV A D + AL+ + T ++ +
Sbjct: 92 TAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLF----------YMLGTVLVKLEQP 141
Query: 771 IKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAE 830
K A ++ +L+ L + +EA+++
Sbjct: 142 -KLA---LPYLQR----------------AVELNENDTEARFQFGMCLANEGMLDEALSQ 181
Query: 831 LSRAIAFKADLHLLHL-RAAFHEHTGDVLGALRDCRAALSVDPNDQE 876
+ + + + AL A+ + P+
Sbjct: 182 FAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHML 228
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 2e-07
Identities = 22/149 (14%), Positives = 37/149 (24%), Gaps = 37/149 (24%)
Query: 713 QALNNLGSVYVDCGQLDLAADCYSNALKI--RHTRAHQGLARVHFLKNNKTTAYEEMTKL 770
A L + G L + H A L RV + + + E L
Sbjct: 24 VAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQR----HAEAAVL 79
Query: 771 IKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAE 830
+++A P + L D+ + A A
Sbjct: 80 LQQAS--------------------------DAAPEHPGIALWLGHALEDAGQAEAAAAA 113
Query: 831 LSRAIAFKADL-----HLLHLRAAFHEHT 854
+RA + LL+ R +
Sbjct: 114 YTRAHQLLPEEPYITAQLLNWRRRLCDWR 142
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 6e-07
Identities = 22/165 (13%), Positives = 39/165 (23%), Gaps = 12/165 (7%)
Query: 620 PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKA 678
+ L+ A +H D + G + + + EA
Sbjct: 5 GPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLG 64
Query: 679 YALADSSQDSSCSSTVVSLLEDALKC-PSDRLRKGQALNNLGSVYVDCGQLDLAADCYSN 737
+ + LL+ A P LG D GQ + AA Y+
Sbjct: 65 RVRWTQQRHAEA----AVLLQQASDAAPEHP----GIALWLGHALEDAGQAEAAAAAYTR 116
Query: 738 ALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASA 780
A ++ L + ++ A
Sbjct: 117 AHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 2e-07
Identities = 24/177 (13%), Positives = 43/177 (24%), Gaps = 16/177 (9%)
Query: 713 QALNNLGSVYVDCGQLDLAADCYSNALKI--RHTRAHQGLARVHFLKNNKTTAYEEMTKL 770
L Y+ A +ALK ++ A A ++ A E +
Sbjct: 9 NIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQA 68
Query: 771 IKKARNNASAY----------EKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMD 820
+ ++A R +A + P +
Sbjct: 69 LSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKA---LADPTYPTPYIANLNKGICSAK 125
Query: 821 SHKENEAIAELSRAIAFKADLHLLHL-RAAFHEHTGDVLGALRDCRAALSVDPNDQE 876
+ A A L R++A + A G + A + S Q
Sbjct: 126 QGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQA 182
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 4e-05
Identities = 15/71 (21%), Positives = 20/71 (28%), Gaps = 2/71 (2%)
Query: 713 QALNNLGSVYVDCGQLDLAADCYSNALKI--RHTRAHQGLARVHFLKNNKTTAYEEMTKL 770
A N G GQ LA +L + A + LAR L A K
Sbjct: 114 IANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKY 173
Query: 771 IKKARNNASAY 781
+ +
Sbjct: 174 QSRVEVLQADD 184
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 51.3 bits (122), Expect = 8e-07
Identities = 21/169 (12%), Positives = 52/169 (30%), Gaps = 26/169 (15%)
Query: 724 DCGQLDLAADCYSNALKI--RHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAY 781
D L+ A++ ++ T A A V +++++ E+
Sbjct: 211 DDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEK--------------- 255
Query: 782 EKRSEYCDRELTRADLEMVTQLDPLRVYP--YRYRAAVLMDSHKENEAIAELSRAIAFKA 839
+++ + L L Y+ +A + K +E+ ++ I +
Sbjct: 256 -------QLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM 308
Query: 840 DLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVYSHE 888
L +E G A A ++ P + + + ++
Sbjct: 309 SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIFQTS 357
|
| >2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Length = 109 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 1e-06
Identities = 22/111 (19%), Positives = 46/111 (41%), Gaps = 8/111 (7%)
Query: 174 SMSGDQVLRNVVFRI----HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENN 229
SM ++++ +V F + + + A S+ F AM G E +I + +
Sbjct: 1 SMFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-SEIHIPD-- 57
Query: 230 ISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLAS 280
+ P+ I+ + + ++ + + +L L A K+ L AC L +
Sbjct: 58 VEPAAFLILLKYMYSDEID-LEADTVLATLYAAKKYIVPALAKACVNFLET 107
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 47.8 bits (115), Expect = 1e-06
Identities = 34/165 (20%), Positives = 53/165 (32%), Gaps = 35/165 (21%)
Query: 713 QALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKL 770
+A NLG+ Y G D A + Y AL++ A N AY +
Sbjct: 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAW----------YNLGNAYYKQGDY 51
Query: 771 IKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAE 830
+A Y+K +LDP + +EAI
Sbjct: 52 -DEAIE---YYQK----------------ALELDPRSAEAWYNLGNAYYKQGDYDEAIEY 91
Query: 831 LSRAIAFKADLHLLH--LRAAFHEHTGDVLGALRDCRAALSVDPN 873
+A+ L A+++ GD A+ + AL +DP
Sbjct: 92 YQKALELDPRSAEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPR 135
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 45.5 bits (109), Expect = 6e-06
Identities = 25/130 (19%), Positives = 40/130 (30%), Gaps = 32/130 (24%)
Query: 713 QALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKL 770
+A NLG+ Y G D A + Y AL++ + A N AY +
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAW----------YNLGNAYYKQGDY 59
Query: 771 IKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAE 830
+A Y+K +LDP + +EAI
Sbjct: 60 -DEA---IEYYQK----------------ALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 99
Query: 831 LSRAIAFKAD 840
+A+ +
Sbjct: 100 YQKALELDPN 109
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 1e-05
Identities = 15/140 (10%), Positives = 43/140 (30%), Gaps = 18/140 (12%)
Query: 713 QALNNLGSVYVDCGQLDLAADCYSNALKI--RHTRAHQGLARVHFLKNNKTTAYEEMTKL 770
+ N+G +Y + A ++ ++ A+ +++ A +++ +
Sbjct: 38 RICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEA 97
Query: 771 IKKAR-NNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIA 829
+ + R N Y+ A + + +A
Sbjct: 98 LIQLRGNQLIDYKILGLQFKLFACEV---------------LYNIAFMYAKKEEWKKAEE 142
Query: 830 ELSRAIAFKADLHLLHLRAA 849
+L+ A + K++ + A
Sbjct: 143 QLALATSMKSEPRHSKIDKA 162
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 1e-04
Identities = 30/167 (17%), Positives = 57/167 (34%), Gaps = 24/167 (14%)
Query: 714 ALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKK 773
+L N G + D A D + +A++ H+R + ++ + N T A + T+ I +
Sbjct: 8 SLWNEGVLAADKKDWKGALDAF-SAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR 66
Query: 774 ARNNASAYEKR--SEYCDRELTRA--DLEMV-TQLDPLRVYPYRYRAAVLMDSHKENEAI 828
++ A AY +R Y + A DL+ QL ++ Y+ K
Sbjct: 67 DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL----QFKLFACE 122
Query: 829 AELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQ 875
+ A + + A A S+ +
Sbjct: 123 VLYNIAFM--------------YAKKEEWKKAEEQLALATSMKSEPR 155
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 1e-05
Identities = 14/80 (17%), Positives = 28/80 (35%), Gaps = 5/80 (6%)
Query: 695 VSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI--RHTRAHQGLAR 752
E + +R +A +LG + + LA ++A + + H LA
Sbjct: 37 ALAFEAVCQKEPER---EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAV 93
Query: 753 VHFLKNNKTTAYEEMTKLIK 772
H ++N A + +
Sbjct: 94 SHTNEHNANAALASLRAWLL 113
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 5e-04
Identities = 18/107 (16%), Positives = 31/107 (28%), Gaps = 10/107 (9%)
Query: 637 DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVV 695
HE + EG + ++ E E Q + EA+ A++ +D +
Sbjct: 16 YHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLA----I 71
Query: 696 SLLEDALKC-PSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI 741
L A P D L + + + A L
Sbjct: 72 IALNHARMLDPKD----IAVHAALAVSHTNEHNANAALASLRAWLLS 114
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 18/102 (17%), Positives = 40/102 (39%), Gaps = 21/102 (20%)
Query: 707 DRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR--------HTRAHQGLARVHFLKN 758
DR + +A +NLG+ ++ GQ + AA+ Y L + ++ L + L +
Sbjct: 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLH 317
Query: 759 NKTTA---YE---EMTKLIK------KARNN-ASAYEKRSEY 787
TA + + + + +A + +A+ +
Sbjct: 318 EFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGH 359
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 3e-05
Identities = 15/110 (13%), Positives = 33/110 (30%), Gaps = 8/110 (7%)
Query: 655 EEGLRKAEESIQMKRSFEAFFLKAYAL---ADSSQDSSCSSTVVSLLEDALK-CPSDRLR 710
G + + Q + L + ++ V+ + A++ D
Sbjct: 25 GGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRT 84
Query: 711 KGQALNNLGSVYVDCGQLDLAADCYSNALKI-RHTRAHQGLARVHFLKNN 759
+ LG+ Y G + A + + L + + G A+ N
Sbjct: 85 LSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS---GN 131
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 4e-05
Identities = 38/218 (17%), Positives = 64/218 (29%), Gaps = 33/218 (15%)
Query: 586 DIGSLSVIYQMLES----DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERL 641
+ SLS + + S G + S + L
Sbjct: 5 SMSSLSASAENVSSLGLGSGGGGTNSHDGNS----------QQGSGSDGGSSMCLE---L 51
Query: 642 VYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAY-ALADSSQDSSCSSTVVSLLED 700
EG L + C G+ + +IQ Y L ++ + + +
Sbjct: 52 ALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKH 111
Query: 701 AL---KCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR--------HTRAHQG 749
L K +DRL + ++ NLG+ G+ D AA C L + RA
Sbjct: 112 DLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYN 171
Query: 750 LARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEY 787
L V+ K + K + A + E+
Sbjct: 172 LGNVYHAKGK----HLGQRNPGKFGDDVKEALTRAVEF 205
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 8e-05
Identities = 38/268 (14%), Positives = 65/268 (24%), Gaps = 63/268 (23%)
Query: 576 QLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAM----------- 624
S ++ D GV +F+ ++ + +
Sbjct: 40 GSDGGSSMCLELALEGERLCNA-GDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFY 98
Query: 625 ------------RSLQLARQHAASDHERLVYE--GWILYDTSHCEEGLRKAEESIQMKRS 670
L LA+ E G L +E E + + R
Sbjct: 99 LGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQ 158
Query: 671 FEAFFLKAYAL-------------ADSSQDSSCSSTVVSLLEDALKC----------PSD 707
+ AL V L A++ D
Sbjct: 159 LGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGD 218
Query: 708 RLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR--------HTRAHQGLARVHFLKNN 759
R +G+A NLG+ Y G A + + L+I RA+ L H
Sbjct: 219 RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQ 278
Query: 760 KTTA---YE---EMTKLIKKARNNASAY 781
A Y+ + + + A +
Sbjct: 279 FEDAAEHYKRTLALAVELGEREVEAQSC 306
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 8e-05
Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 8/67 (11%)
Query: 707 DRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--------RAHQGLARVHFLKN 758
+R + Q+ +LG+ Y + + A + ++ L I RA L H
Sbjct: 298 EREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIG 357
Query: 759 NKTTAYE 765
A +
Sbjct: 358 GHERALK 364
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 2e-05
Identities = 49/238 (20%), Positives = 89/238 (37%), Gaps = 45/238 (18%)
Query: 655 EEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQ 713
E+ L++ EE + + +A LK AL + S + LL A+K + + +
Sbjct: 85 EKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEA---EVLLSKAVKLEPELV---E 138
Query: 714 ALNNLGSVYVDCGQLDLAADCYSNALKI-RHTRAHQGLARVHFLKNNKTTAYEEMTKLIK 772
A N LG VY G + A C+S AL ++ + Q L+ V L+ +T + +E ++ +
Sbjct: 139 AWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMV--LRQLQTDSGDEHSRHVM 196
Query: 773 KARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSH--------KE 824
+ + Q+D L + + +
Sbjct: 197 DS---VRQAKL----------------AVQMDVLDGRSWYILGNAYLSLYFNTGQNPKIS 237
Query: 825 NEAIAELSRAIAFK------ADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQE 876
+A++ ++A DLH RA H++ AL A ++DP E
Sbjct: 238 QQALSAYAQAEKVDRKASSNPDLH--LNRATLHKYEESYGEALEGFSQAAALDPAWPE 293
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 3e-05
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 707 DRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI-RHTRAHQGLARVHFLKNNKTTAYE 765
DR + Q+ +LG+ Y + A D + L I + + G R + AY
Sbjct: 84 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRAC---WSLGNAYT 140
Query: 766 EM 767
+
Sbjct: 141 AL 142
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 7e-05
Identities = 17/89 (19%), Positives = 29/89 (32%), Gaps = 14/89 (15%)
Query: 707 DRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR--------HTRAHQGLARVHFLKN 758
R +G+A NLG+ + G A + L I A+ L +
Sbjct: 4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLG 63
Query: 759 NKTTA---YE---EMTKLIKKARNNASAY 781
TA Y+ + + +K A +
Sbjct: 64 EFETASEYYKKTLLLARQLKDRAVEAQSC 92
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 4e-04
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 707 DRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR 742
DR+ +G+A +LG+ Y G D A L+I
Sbjct: 124 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 3e-05
Identities = 10/76 (13%), Positives = 25/76 (32%), Gaps = 12/76 (15%)
Query: 707 DRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR--------HTRAHQGLARVHFLKN 758
G+ L N+G Q + A + A+ + +A+ + ++H+
Sbjct: 219 QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLG 278
Query: 759 NKTTAYEEMTKLIKKA 774
++ + K
Sbjct: 279 K----IDKAHEYHSKG 290
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 5e-05
Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 4/93 (4%)
Query: 695 VSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI--RHTRAHQGLAR 752
V E A+ + LGS + G+ A +N +K H A
Sbjct: 10 VPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAM 69
Query: 753 VHFLKNNKTTAYEEMTKLIKKARNNAS--AYEK 783
V + E + K+I + ++ + +Y++
Sbjct: 70 VLYNLGRYEQGVELLLKIIAETSDDETIQSYKQ 102
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 6e-05
Identities = 27/119 (22%), Positives = 40/119 (33%), Gaps = 5/119 (4%)
Query: 641 LVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAY-ALADSSQDSSCSSTVVSLLE 699
L EG L + C G+ E ++Q+ Y L ++ + +
Sbjct: 12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHH 71
Query: 700 DALKCP---SDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI-RHTRAHQGLARVH 754
L D+L + +A NLG+ G D A C L I R G AR
Sbjct: 72 HDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARAL 130
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 11/76 (14%)
Query: 707 DRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR--------HTRAHQGLARVHFLKN 758
DR+ +G+A +LG+ Y G D A L+I A L+ +
Sbjct: 302 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQ---M 358
Query: 759 NKTTAYEEMTKLIKKA 774
+Y ++ +
Sbjct: 359 VLGLSYSTNNSIMSEN 374
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 5e-04
Identities = 16/102 (15%), Positives = 39/102 (38%), Gaps = 21/102 (20%)
Query: 707 DRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--------RAHQGLARVHFLKN 758
D+ + +A +NLG+ Y+ G+ + A++ Y L + ++ L + L
Sbjct: 222 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQ 281
Query: 759 NKTTA---YE---EMTKLIK------KARNN-ASAYEKRSEY 787
+ A + + + + +A + +AY +
Sbjct: 282 DYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNH 323
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 8e-04
Identities = 19/89 (21%), Positives = 31/89 (34%), Gaps = 14/89 (15%)
Query: 707 DRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR--------HTRAHQGLARVHFLKN 758
DR +G+A NLG+ + G A + L I RA+ L +
Sbjct: 182 DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG 241
Query: 759 NKTTA---YE---EMTKLIKKARNNASAY 781
TA Y+ + + +K A +
Sbjct: 242 EFETASEYYKKTLLLARQLKDRAVEAQSC 270
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 7e-05
Identities = 15/92 (16%), Positives = 27/92 (29%), Gaps = 1/92 (1%)
Query: 794 RADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLRAAF-HE 852
+ + + LD + A +A+ S + AA H
Sbjct: 38 QKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97
Query: 853 HTGDVLGALRDCRAALSVDPNDQEMLELHSRV 884
GD+ GA +A ++ L +R
Sbjct: 98 QLGDLDGAESGFYSARALAAAQPAHEALAARA 129
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 1e-04
Identities = 9/61 (14%), Positives = 16/61 (26%), Gaps = 8/61 (13%)
Query: 707 DRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--------RAHQGLARVHFLKN 758
D++ A LG + L A + A I L + +
Sbjct: 142 DQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHH 201
Query: 759 N 759
+
Sbjct: 202 H 202
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 8/67 (11%)
Query: 707 DRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--------RAHQGLARVHFLKN 758
D L + +V + G L A Y +L A +GL + +
Sbjct: 102 DPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161
Query: 759 NKTTAYE 765
N A +
Sbjct: 162 NLLEAQQ 168
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 5e-04
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 9/68 (13%)
Query: 707 DRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH---------TRAHQGLARVHFLK 757
D + +AL+ +G V G D A C+ ++ + +A V
Sbjct: 61 DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHF 120
Query: 758 NNKTTAYE 765
+ A +
Sbjct: 121 GDLAGARQ 128
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 25/193 (12%), Positives = 56/193 (29%), Gaps = 24/193 (12%)
Query: 698 LEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--------RAHQG 749
L+ P +R Q+L + Y D D A AL++ +
Sbjct: 168 LDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLN 227
Query: 750 LARVHFLKNNKTTA---YEEMTKLIKKAR---------NNASAYEKRSEYCD-RELTRAD 796
+A + + A +++ K+ ++ + K + +
Sbjct: 228 IANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEG 287
Query: 797 LEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLRAAFHEHTGD 856
L+ +T Y+ L +KE ++ +++ +L A
Sbjct: 288 LDHITARS---HKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAA 344
Query: 857 VLGALRDCRAALS 869
V + A +
Sbjct: 345 VFESSCHFEQAAA 357
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 40.5 bits (96), Expect = 3e-04
Identities = 13/132 (9%), Positives = 32/132 (24%), Gaps = 30/132 (22%)
Query: 713 QALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKL 770
+ G + D G + D + A+++ ++ K A + +
Sbjct: 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYW----------LMKGKALYNLER- 55
Query: 771 IKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAE 830
YE+ + + + D + +A L +
Sbjct: 56 ----------YEEAVDCYNYVIN-------VIEDEYNKDVWAAKADALRYIEGKEVEAEI 98
Query: 831 LSRAIAFKADLH 842
+ H
Sbjct: 99 AEARAKLEHHHH 110
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 3e-04
Identities = 7/70 (10%), Positives = 22/70 (31%), Gaps = 2/70 (2%)
Query: 714 ALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKLI 771
L ++ A + ++ + + L +++ + A + + I
Sbjct: 9 TRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68
Query: 772 KKARNNASAY 781
+ AR +
Sbjct: 69 EVAREEGTQK 78
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 3e-04
Identities = 17/102 (16%), Positives = 40/102 (39%), Gaps = 21/102 (20%)
Query: 707 DRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--------RAHQGLARVHFLKN 758
D+ + +A +NLG+ Y+ G+ + A++ Y L + ++ L + L
Sbjct: 218 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQ 277
Query: 759 NKTTA---YE---EMTKLIK------KARNN-ASAYEKRSEY 787
+ A + + + +K +A + +AY +
Sbjct: 278 DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNH 319
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 3e-04
Identities = 17/102 (16%), Positives = 33/102 (32%), Gaps = 15/102 (14%)
Query: 695 VSLLEDALK-CPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--------R 745
VS E A++ D + LG+ Y A + + + L + T +
Sbjct: 25 VSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84
Query: 746 AHQGLARVHFLKNNKTTA---YE---EMTKLIKKARNNASAY 781
A L + N A + ++++ + A A
Sbjct: 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARAL 126
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 3e-04
Identities = 31/166 (18%), Positives = 52/166 (31%), Gaps = 17/166 (10%)
Query: 641 LVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYA-LADSSQDSSCSSTVVSLLE 699
L EG L + C G+ E ++Q+ Y+ L ++ + +
Sbjct: 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHH 67
Query: 700 DALKCP---SDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI-RHTRAHQGLARVHF 755
L D+L + +A NLG+ G D A C L I R G AR
Sbjct: 68 HDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARAL- 126
Query: 756 LKNN---------KTTAYEEMTKLIKKARNNASAYEKRSEYCDREL 792
N K+ + + +A + + + L
Sbjct: 127 --YNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 4e-04
Identities = 19/89 (21%), Positives = 31/89 (34%), Gaps = 14/89 (15%)
Query: 707 DRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR--------HTRAHQGLARVHFLKN 758
DR +G+A NLG+ + G A + L I RA+ L +
Sbjct: 178 DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG 237
Query: 759 NKTTA---YE---EMTKLIKKARNNASAY 781
TA Y+ + + +K A +
Sbjct: 238 EFETASEYYKKTLLLARQLKDRAVEAQSC 266
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 39.7 bits (94), Expect = 3e-04
Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 16/73 (21%)
Query: 713 QALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKL 770
+A NLG+ Y G D A + Y AL++ + A N AY +
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAW----------YNLGNAYYKQGDY 59
Query: 771 IKKARNNASAYEK 783
+A Y+K
Sbjct: 60 -DEA---IEYYQK 68
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 4e-04
Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Query: 799 MVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHL-RAAFHEHTGDV 857
+ ++ D + M A+ +AI + RAA + G+
Sbjct: 3 LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY 62
Query: 858 LGALRDCRAALSVDPN 873
GA++DC A+ +DP
Sbjct: 63 AGAVQDCERAICIDPA 78
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 39.5 bits (93), Expect = 7e-04
Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 1/79 (1%)
Query: 802 QLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGA 860
+L+P + RAA A+ + RAI + R + A
Sbjct: 40 ELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEA 99
Query: 861 LRDCRAALSVDPNDQEMLE 879
+ + AL +DP+++
Sbjct: 100 VAYYKKALELDPDNETYKS 118
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 5e-04
Identities = 15/109 (13%), Positives = 39/109 (35%), Gaps = 9/109 (8%)
Query: 781 YEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAF--- 837
Y++ ++ D ++ + + + A + +AI S+ +
Sbjct: 61 YKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN 120
Query: 838 --KADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRV 884
KA L+ + + G + A + A S++PN+ ++ +
Sbjct: 121 NVKA----LYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC 165
|
| >1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 6e-04
Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 11/98 (11%)
Query: 184 VVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSV 243
VV + E+ + A S F ++ +L E I+P G I+ DF
Sbjct: 32 VVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPE--INPEGFNILLDFMY 89
Query: 244 TGSLNGVTPNLLLEILIFAN--------KFCCERLKDA 273
T LN + ++ ++ A C + +K +
Sbjct: 90 TSRLN-LREGNIMAVMATAMYLQMEHVVDTCRKFIKAS 126
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 6e-04
Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 1/70 (1%)
Query: 818 LMDSHKENEAIAELSRAIAFKADLHLLHL-RAAFHEHTGDVLGALRDCRAALSVDPNDQE 876
+A +AI + +AA + ++ C A+ V +
Sbjct: 18 AYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA 77
Query: 877 MLELHSRVYS 886
+L ++ S
Sbjct: 78 DYKLIAKAMS 87
|
| >2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120 | Back alignment and structure |
|---|
Score = 39.5 bits (93), Expect = 6e-04
Identities = 22/112 (19%), Positives = 38/112 (33%), Gaps = 9/112 (8%)
Query: 169 SHETVSMSGDQVLRN------VVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCED 222
H + +SG R VV + + R AA S F + +
Sbjct: 7 DHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNV 66
Query: 223 IDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDAC 274
++ +S L + DF+ T +L V+ + +IL A + C
Sbjct: 67 YEIDF--VSAEALTALMDFAYTATLT-VSTANVGDILSAARLLEIPAVSHVC 115
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 7e-04
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 811 YRYRAAVLMDSHKENEAIAELSRAIAF-----KADLHLLHLRAAFHEHTGDVLGALRDCR 865
+R RAA + ++A E S+AI KA L+ R+ E G + A+ D +
Sbjct: 68 HRNRAACHLKLEDYDKAETEASKAIEKDGGDVKA----LYRRSQALEKLGRLDQAVLDLQ 123
Query: 866 AALSVDPNDQEMLELHSRV 884
+S++P ++ E +
Sbjct: 124 RCVSLEPKNKVFQEALRNI 142
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 8e-04
Identities = 32/176 (18%), Positives = 54/176 (30%), Gaps = 34/176 (19%)
Query: 723 VDCGQLDLAADC--------------YSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMT 768
+CG+L D + + + L LKN T +
Sbjct: 179 AECGELKEGDDWGIFPKDGSGDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFF---- 234
Query: 769 KLIKKARNNASA---YEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKEN 825
K++N A Y K Y + A+ +L P+ + A +
Sbjct: 235 ----KSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQ 290
Query: 826 EAIAELSRAIAF-----KADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQE 876
A+ A+ KA L+ RA + + AL D + A + P D+
Sbjct: 291 GAVDSCLEALEIDPSNTKA----LYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA 342
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 889 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 7e-11 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 9e-09 | |
| d1r29a_ | 122 | d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB | 5e-05 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 1e-04 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 5e-04 | |
| d1buoa_ | 121 | d.42.1.1 (A:) Promyelocytic leukaemia zinc finger | 6e-04 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 0.001 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 0.001 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 0.004 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.8 bits (151), Expect = 7e-11
Identities = 51/396 (12%), Positives = 110/396 (27%), Gaps = 31/396 (7%)
Query: 486 ASSLMTKQNVEAALAEINRILG-FKLALECLELRFCFFLALEDYQAALCDVQAILTLSPD 544
A + EAA ++ L L + + +P
Sbjct: 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65
Query: 545 YRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG 604
+ + L+ ++ +L M +
Sbjct: 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 125
Query: 605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYE----------GWILYDTSHC 654
L + +++L + A + + + G +
Sbjct: 126 SALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEI 185
Query: 655 EEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQ 713
+ E+++ + +F +A+ L ++ + L+ S
Sbjct: 186 WLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRA-------VAAYLRALSLSPNHAV 238
Query: 714 ALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKLI 771
NL VY + G +DLA D Y A++++ A+ LA K + A + +
Sbjct: 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298
Query: 772 KKARNNASAYEKRSEYC----DRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEA 827
+ +A + + + E ++ P + A+VL K EA
Sbjct: 299 RLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA 358
Query: 828 IAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRD 863
+ AI A + + G+ L ++D
Sbjct: 359 LMHYKEAIRISPTF------ADAYSNMGNTLKEMQD 388
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.2 bits (134), Expect = 9e-09
Identities = 43/400 (10%), Positives = 104/400 (26%), Gaps = 39/400 (9%)
Query: 369 LERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAV--NAGHIYSIAGLARL-- 424
++ + L + + D + H A+ N + + L +
Sbjct: 19 ERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYK 78
Query: 425 ---GYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYP 481
+ + + + + + +
Sbjct: 79 ERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVR 138
Query: 482 YMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTL 541
+ EA + I C F A + A+ + +TL
Sbjct: 139 SDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL 198
Query: 542 SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA 601
P++ + N +++DR +++ + L
Sbjct: 199 DPNFL----------------DAYINLGNVLKEARIFDR--------AVAAYLRALSLSP 234
Query: 602 PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKA 661
V++ + + + A+ + + A + + L + E
Sbjct: 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCY 294
Query: 662 EESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSV 721
++++ + LA+ ++ V L AL+ + A +NL SV
Sbjct: 295 NTALRLCPTHADSL---NNLANIKREQGNIEEAVRLYRKALEVFPE---FAAAHSNLASV 348
Query: 722 YVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNN 759
G+L A Y A++I A+ + +
Sbjct: 349 LQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388
|
| >d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: B-cell lymphoma 6 (Bcl6) protein BTB domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (96), Expect = 5e-05
Identities = 21/103 (20%), Positives = 40/103 (38%), Gaps = 3/103 (2%)
Query: 178 DQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRI 237
+L +VV + E+ + A S F ++ +L I+P G I
Sbjct: 22 RDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLD--PEINPEGFNI 79
Query: 238 ISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLAS 280
+ DF T LN + ++ ++ A E + D C + + +
Sbjct: 80 LLDFMYTSRLN-LREGNIMAVMATAMYLQMEHVVDTCRKFIKA 121
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 41.9 bits (97), Expect = 1e-04
Identities = 23/180 (12%), Positives = 54/180 (30%), Gaps = 10/180 (5%)
Query: 713 QALNNLGSVYVDCGQLDLAADCYSNALKI--RHTRAHQGLARVHFLKNNKTTAYEEMTKL 770
Q L G+ + AA CY A+ + A + A + +
Sbjct: 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRA 64
Query: 771 IKKARNNASAYEKRSEYC----DRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENE 826
++ + A+ + + A+L+ L + + + K+
Sbjct: 65 LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 124
Query: 827 AIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVYS 886
+ R I +++LH R + L +C+ +D + + + +
Sbjct: 125 WNSIEERRIHQESELHSYLTRLIA----AERERELEECQRNHEGHEDDGHIRAQQACIEA 180
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.8 bits (92), Expect = 5e-04
Identities = 16/139 (11%), Positives = 44/139 (31%), Gaps = 16/139 (11%)
Query: 713 QALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKL 770
+ N+G +Y + A ++ ++ A+ +++ A +++ +
Sbjct: 37 RICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEA 96
Query: 771 IKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAE 830
+ + R N K + Q A + + +A +
Sbjct: 97 LIQLRGNQLIDYK--------------ILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQ 142
Query: 831 LSRAIAFKADLHLLHLRAA 849
L+ A + K++ + A
Sbjct: 143 LALATSMKSEPRHSKIDKA 161
|
| >d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.5 bits (89), Expect = 6e-04
Identities = 18/104 (17%), Positives = 39/104 (37%), Gaps = 8/104 (7%)
Query: 178 DQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRI 237
L +VV + ++ R A S F + + + + + P +
Sbjct: 25 AGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNSQHYTLDFLS-------PKTFQQ 77
Query: 238 ISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASL 281
I +++ T +L L ++L A E L++ C + L ++
Sbjct: 78 ILEYAYTATLQ-AKAEDLDDLLYAAEILEIEYLEEQCLKMLETI 120
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (93), Expect = 0.001
Identities = 18/154 (11%), Positives = 37/154 (24%), Gaps = 10/154 (6%)
Query: 694 VVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLA 751
++ L+ K ++ R N + G + L
Sbjct: 68 QITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLG 127
Query: 752 RVHFLKNNKTTAYEEMTKLIKKARNNA-----SAYEKRSEYCDRELTRADLEMVTQLDPL 806
+ + + + + + + R++ + QL P
Sbjct: 128 IISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQT---SQAESYYRHAAQLVPS 184
Query: 807 RVYPYRYRAAVLMDSHKENEAIAELSRAIAFKAD 840
PY A + I R+IA K
Sbjct: 185 NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP 218
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (93), Expect = 0.001
Identities = 19/171 (11%), Positives = 40/171 (23%), Gaps = 11/171 (6%)
Query: 713 QALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIK 772
+ V+ L D Y L A + + K
Sbjct: 21 DSKLGPAEVWTSRQALQ---DLYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAK 77
Query: 773 KARNNASAYEKRS-------EYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKEN 825
N + + + +L V +D + +
Sbjct: 78 NRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTS 137
Query: 826 EAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQE 876
+ S + ++ L+HL + A R A + P++ +
Sbjct: 138 AIVKPQSSSCSYICQHCLVHL-GDIARYRNQTSQAESYYRHAAQLVPSNGQ 187
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.9 bits (86), Expect = 0.004
Identities = 31/295 (10%), Positives = 65/295 (22%), Gaps = 22/295 (7%)
Query: 607 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILY---DTSHCEEGLRKAEE 663
F + L L+ A+ + A Q E Y G LR+ E
Sbjct: 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLE 81
Query: 664 SIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNN------ 717
++ ++ + + A +G
Sbjct: 82 LKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKR 141
Query: 718 LGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLI------ 771
+ + + + A+++ T + + N + Y++
Sbjct: 142 ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV 201
Query: 772 --KKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIA 829
+ E A +L P + ++ EA+
Sbjct: 202 RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVE 261
Query: 830 ELSRAIAFK-----ADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLE 879
A+ + + L L A + D D L
Sbjct: 262 HFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLL 316
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 889 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.96 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.96 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.93 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.91 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.9 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.89 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.89 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.87 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.86 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.85 | |
| d1r29a_ | 122 | B-cell lymphoma 6 (Bcl6) protein BTB domain {Human | 99.83 | |
| d1buoa_ | 121 | Promyelocytic leukaemia zinc finger (PLZF) protein | 99.81 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.79 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.75 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.63 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.63 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.59 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.59 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.56 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.55 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.52 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.5 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.48 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.47 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.44 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.42 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.42 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.39 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.38 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.38 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.37 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.3 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.29 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.27 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.27 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.23 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.21 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.18 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.16 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.15 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.14 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.13 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.1 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.1 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.91 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.84 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.84 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.71 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.63 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.56 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.52 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.65 | |
| d2c9wc1 | 96 | Elongin C {Human (Homo sapiens) [TaxId: 9606]} | 97.63 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.61 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.6 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.51 | |
| d1hv2a_ | 99 | Elongin C {Baker's yeast (Saccharomyces cerevisiae | 97.13 | |
| d1nn7a_ | 105 | Potassium channel kv4.2 {Rat (Rattus norvegicus) [ | 96.73 | |
| d3kvta_ | 103 | akv3.1 voltage-gated potassium channel {California | 96.51 | |
| d1t1da_ | 100 | Shaker potassium channel {California sea hare (Apl | 96.21 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.72 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 94.3 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 93.85 | |
| d1nexa2 | 72 | Centromere DNA-binding protein complex Cbf3 subuni | 80.72 | |
| d1fs1b2 | 61 | Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa | 80.26 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.8e-38 Score=257.87 Aligned_cols=367 Identities=14% Similarity=0.084 Sum_probs=226.4
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHCCCH
Q ss_conf 4889975108703899999885603998804489999999820689999999999984789-988999999999811219
Q 002716 450 WMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDY 528 (889)
Q Consensus 450 ~~~~~~~~~~~~~~A~~~l~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~ 528 (889)
..+...|.| ++|+..++++++.+|+++.++..+|.++...|++++|+..+++++..+| +..++..+|.++..+|++
T Consensus 7 ~~~~~~G~~---~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 7 HREYQAGDF---EAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHTCH---HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHCCCH---HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
T ss_conf 999986999---99999999999868998999999999999869999999999999985999899999999996420002
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHH
Q ss_conf 99999999999749997002434889999999999932354798999763211555540318999999843898758999
Q 002716 529 QAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYF 608 (889)
Q Consensus 529 ~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~ 608 (889)
++|+..+..++..+|... ..................+.... .......+.......
T Consensus 84 ~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~ 139 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPDFI------DGYINLAAALVAAGDMEGAVQAY------------------VSALQYNPDLYCVRS 139 (388)
T ss_dssp HHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHHSCSSHHHHHH------------------HHHHHHCTTCTHHHH
T ss_pred CCCCCCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCCCC------------------CCCCCCCCCCCCCCC
T ss_conf 222222221211222222------22222222222222222222221------------------112222222222222
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCC
Q ss_conf 988999980998899999999998099919999998899995587999999999998018884-9999999999974799
Q 002716 609 RQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQD 687 (889)
Q Consensus 609 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~~~~ 687 (889)
..+......+....+...+.+.+...|.....+..+|..+...|++++|...+++++.++|++ .++..+|.++...+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~-- 217 (388)
T d1w3ba_ 140 DLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEAR-- 217 (388)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT--
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC--
T ss_conf 222222110001356788887402586106899863630102471999999999999849464999999715522005--
Q ss_pred CCCCHHHHHHHHHHHCCHHHH----CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHCCCHH
Q ss_conf 876024666599983013310----752599999899999739968999999998733853--59998999999818999
Q 002716 688 SSCSSTVVSLLEDALKCPSDR----LRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKT 761 (889)
Q Consensus 688 ~~~~~~~~~~~~~Al~~~~~~----~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~ 761 (889)
.+++|+..+.+. ......+..+|.++...|++++|+..|+++++..|+ .++..+|.++...|+++
T Consensus 218 ---------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 288 (388)
T d1w3ba_ 218 ---------IFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVA 288 (388)
T ss_dssp ---------CTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHH
T ss_pred ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
T ss_conf ---------29999999998577755479999999999998789999999999999849998999999999999748799
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCH
Q ss_conf 99999999999831699999999813997899999989883499991899999999996799899999999998437999
Q 002716 762 TAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL 841 (889)
Q Consensus 762 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~ 841 (889)
+|+..++++ +...|.....+..+|.++...|++++|+..++++++..|+.
T Consensus 289 ~A~~~~~~~------------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 338 (388)
T d1w3ba_ 289 EAEDCYNTA------------------------------LRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF 338 (388)
T ss_dssp HHHHHHHHH------------------------------HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTC
T ss_pred HHHHHHHHH------------------------------HCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf 999999865------------------------------40487300101579999998789999999999999868898
Q ss_pred -HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf -9999999999980999999999999881499998889999853
Q 002716 842 -HLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRV 884 (889)
Q Consensus 842 -~~l~l~a~~~~~~g~~~~A~~~~~~al~l~p~~~~~l~l~~~~ 884 (889)
..+..+|.++..+|++++|+..|+++++++|++++++..++++
T Consensus 339 ~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~ 382 (388)
T d1w3ba_ 339 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 382 (388)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99999999999985999999999999997099989999999999
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.1e-37 Score=252.19 Aligned_cols=375 Identities=14% Similarity=0.088 Sum_probs=317.1
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHH
Q ss_conf 98136887123499999999999980860--2576688998650880789999851231148520488997510870389
Q 002716 387 HQLGCVRLLRKEYDEAEHLFEAAVNAGHI--YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKR 464 (889)
Q Consensus 387 ~~lG~~~~~~g~~~eA~~~~~~Al~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A 464 (889)
..+|..++..|+|++|++.|+++++..+. ..+..+|.+ +...+.+ ++|
T Consensus 3 l~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~---------------------------~~~~~~~---~~A 52 (388)
T d1w3ba_ 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSI---------------------------HFQCRRL---DRS 52 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH---------------------------HHHTTCH---HHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH---------------------------HHHCCCH---HHH
T ss_conf 9999999986999999999999998689989999999999---------------------------9986999---999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 9999885603998804489999999820689999999999984789-988999999999811219999999999997499
Q 002716 465 WEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSP 543 (889)
Q Consensus 465 ~~~l~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p 543 (889)
+..++++++.+|+++.++..+|.++...|++++|+..+.++....| ........+......+....+...........+
T Consensus 53 ~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (388)
T d1w3ba_ 53 AHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 132 (388)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999859998999999999964200022222222212112222222222222222222222222222111222222
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHH
Q ss_conf 97002434889999999999932354798999763211555540318999999843898758999988999980998899
Q 002716 544 DYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAA 623 (889)
Q Consensus 544 ~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 623 (889)
... .............+....+...+ .+.+...|.....+..+|..+...|+++.|
T Consensus 133 ~~~------~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 188 (388)
T d1w3ba_ 133 DLY------CVRSDLGNLLKALGRLEEAKACY------------------LKAIETQPNFAVAWSNLGCVFNAQGEIWLA 188 (388)
T ss_dssp TCT------HHHHHHHHHHHTTSCHHHHHHHH------------------HHHHHHCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred CCC------CCCCCCCCCCCCCCHHHHHHHHH------------------HHHHCCCCCHHHHHHHHCCCCCCCCCHHHH
T ss_conf 222------22222222221100013567888------------------874025861068998636301024719999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 999999998099919999998899995587999999999998018884-9999999999974799876024666599983
Q 002716 624 MRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDAL 702 (889)
Q Consensus 624 ~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al 702 (889)
...++++++.+|++..++..+|.++...|++++|+..+++++...+.. ..+..+|.++...+ .+++|+
T Consensus 189 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~A~ 257 (388)
T d1w3ba_ 189 IHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG-----------LIDLAI 257 (388)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CHHHHH
T ss_conf 999999998494649999997155220052999999999857775547999999999999878-----------999999
Q ss_pred CCHHHH----CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Q ss_conf 013310----752599999899999739968999999998733853--59998999999818999999999999998316
Q 002716 703 KCPSDR----LRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARN 776 (889)
Q Consensus 703 ~~~~~~----~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~ 776 (889)
..++++ +....++.++|.++...|++++|+..++.++...|. ..+..++.++...|++
T Consensus 258 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------------- 321 (388)
T d1w3ba_ 258 DTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNI---------------- 321 (388)
T ss_dssp HHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH----------------
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCH----------------
T ss_conf 9999999849998999999999999748799999999865404873001015799999987899----------------
Q ss_pred CHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCC
Q ss_conf 99999999813997899999989883499991899999999996799899999999998437999-99999999999809
Q 002716 777 NASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL-HLLHLRAAFHEHTG 855 (889)
Q Consensus 777 ~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~-~~l~l~a~~~~~~g 855 (889)
++|+..++++++++|+++.++..+|.++...|++++|+..|+++++++|+. ..+..+|.++..+|
T Consensus 322 --------------~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 322 --------------EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp --------------HHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred --------------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf --------------999999999998688989999999999998599999999999999709998999999999999858
Q ss_pred C
Q ss_conf 9
Q 002716 856 D 856 (889)
Q Consensus 856 ~ 856 (889)
|
T Consensus 388 D 388 (388)
T d1w3ba_ 388 D 388 (388)
T ss_dssp C
T ss_pred C
T ss_conf 9
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.8e-26 Score=184.00 Aligned_cols=121 Identities=13% Similarity=0.119 Sum_probs=52.9
Q ss_pred CCHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 9988999999999980999--19999998899995587999999999998018884999999999997479987602466
Q 002716 618 NCPEAAMRSLQLARQHAAS--DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVV 695 (889)
Q Consensus 618 g~~~~A~~~l~~al~~~p~--~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~ 695 (889)
+.+.+|...+.+++..+|. ++.++..+|.++...|++++|+..+++++..+|+..
T Consensus 150 ~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~----------------------- 206 (323)
T d1fcha_ 150 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDY----------------------- 206 (323)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-----------------------
T ss_conf 579999999999999713012221110368888888877550021112222222221-----------------------
Q ss_pred HHHHHHHCCHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 6599983013310752599999899999739968999999998733853--59998999999818999999999999998
Q 002716 696 SLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKK 773 (889)
Q Consensus 696 ~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~ 773 (889)
.++..+|.++...|++++|+.+|+++++.+|+ .++.++|.++...|++++|+..|+++++.
T Consensus 207 -----------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 207 -----------------LLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp -----------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -----------------CCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf -----------------110133301221111013788877899884324999999999999878999999999999970
Q ss_pred HCCCH
Q ss_conf 31699
Q 002716 774 ARNNA 778 (889)
Q Consensus 774 ~~~~~ 778 (889)
.|++.
T Consensus 270 ~p~~~ 274 (323)
T d1fcha_ 270 QRKSR 274 (323)
T ss_dssp HHTC-
T ss_pred CCCCH
T ss_conf 97570
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=5.8e-27 Score=187.17 Aligned_cols=76 Identities=16% Similarity=0.085 Sum_probs=27.9
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 9998438987589999889999809988999999999980999199999988999955879999999999980188
Q 002716 594 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 669 (889)
Q Consensus 594 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p 669 (889)
++++..+|.++.++..+|.++...|++++|+..++++++..|+++.+++.+|.++...|++++|+..|+++++++|
T Consensus 196 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p 271 (323)
T d1fcha_ 196 TAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 271 (323)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 1222222222111013330122111101378887789988432499999999999987899999999999997097
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=2.7e-23 Score=163.50 Aligned_cols=186 Identities=11% Similarity=0.115 Sum_probs=139.5
Q ss_pred HHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 5603998804489999999820689999999999984789-9889999999998112-1999999999999749997002
Q 002716 471 ATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALE-DYQAALCDVQAILTLSPDYRMF 548 (889)
Q Consensus 471 al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g-~~~~A~~~~~~al~~~p~~~~~ 548 (889)
++..+|+...++.++|.++...+.+++|+..+++++.++| +..++..+|.++..+| ++++|+..+++++..+|++.
T Consensus 35 ~I~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~-- 112 (315)
T d2h6fa1 35 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY-- 112 (315)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH--
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH--
T ss_conf 522697799999999999995886699999999999879887699999999999837679999999999998877422--
Q ss_pred HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 43488999999999993235479899976321155554031899999984389875899998899998099889999999
Q 002716 549 EGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQ 628 (889)
Q Consensus 549 ~~~~~a~~~lg~~~~~~g~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~ 628 (889)
.++..+|.++...|++++|+..+ .++++.+|.+..+|..+|.++...|++++|+..++
T Consensus 113 ----~a~~~~~~~~~~l~~~~eAl~~~------------------~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~ 170 (315)
T d2h6fa1 113 ----QVWHHRRVLVEWLRDPSQELEFI------------------ADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVD 170 (315)
T ss_dssp ----HHHHHHHHHHHHHTCCTTHHHHH------------------HHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHH
T ss_pred ----HHHHHHHHHHHHHCCHHHHHHHH------------------HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ----68988758888505378899887------------------55543210046889988778888886678999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHCCCCH-HHHHHHHHH
Q ss_conf 9998099919999998899995587------999999999998018884-999999999
Q 002716 629 LARQHAASDHERLVYEGWILYDTSH------CEEGLRKAEESIQMKRSF-EAFFLKAYA 680 (889)
Q Consensus 629 ~al~~~p~~~~~~~~lg~~~~~~g~------~~eA~~~~~~al~~~p~~-~a~~~la~~ 680 (889)
++++.+|.+..++.++|.++...+. +++|+..+.+++.++|++ .++..++.+
T Consensus 171 ~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~l 229 (315)
T d2h6fa1 171 QLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGI 229 (315)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99987974499998899999874563102354776799999998498856999998779
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.2e-21 Score=152.90 Aligned_cols=193 Identities=14% Similarity=0.118 Sum_probs=156.8
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHCCCH
Q ss_conf 8899751087038999998856039988044899999998206-89999999999984789-988999999999811219
Q 002716 451 MYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQ-NVEAALAEINRILGFKL-ALECLELRFCFFLALEDY 528 (889)
Q Consensus 451 ~~~~~~~~~~~~~A~~~l~~al~~dp~~~~a~~~la~~~~~~g-~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~ 528 (889)
++...+.+ ++|+..+++|++++|++..+|..+|.++...| ++++|+..+++++..+| +..++..+|.++..+|++
T Consensus 52 ~~~~~e~~---~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~ 128 (315)
T d2h6fa1 52 VLQRDERS---ERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDP 128 (315)
T ss_dssp HHHHTCCC---HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHCCCH---HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf 99958866---999999999998798876999999999998376799999999999988774226898875888850537
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHH
Q ss_conf 99999999999749997002434889999999999932354798999763211555540318999999843898758999
Q 002716 529 QAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYF 608 (889)
Q Consensus 529 ~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~ 608 (889)
++|+..+.+++.++|++. .++..+|.++...+++++|+.++ .++++.+|.+..+|.
T Consensus 129 ~eAl~~~~kal~~dp~n~------~a~~~~~~~~~~~~~~~~Al~~~------------------~~al~~~p~n~~a~~ 184 (315)
T d2h6fa1 129 SQELEFIADILNQDAKNY------HAWQHRQWVIQEFKLWDNELQYV------------------DQLLKEDVRNNSVWN 184 (315)
T ss_dssp TTHHHHHHHHHHHCTTCH------HHHHHHHHHHHHHTCCTTHHHHH------------------HHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHCCH------HHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHCCCCHHHHH
T ss_conf 889988755543210046------88998877888888667899999------------------999987974499998
Q ss_pred HHHHHHHHHCC------HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCH
Q ss_conf 98899998099------8899999999998099919999998899995587999999999998018884
Q 002716 609 RQSLLLLRLNC------PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (889)
Q Consensus 609 ~la~~~~~~g~------~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 671 (889)
++|.++...+. +++|+..+.++++..|.+..++.++|.++...| ..++...++.++++.|+.
T Consensus 185 ~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~ 252 (315)
T d2h6fa1 185 QRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSH 252 (315)
T ss_dssp HHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTC
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHCCCC
T ss_conf 89999987456310235477679999999849885699999877988627-188999999999728775
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.90 E-value=6.1e-23 Score=161.17 Aligned_cols=49 Identities=12% Similarity=-0.004 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 9999998988349999189999999999679989999999999843799
Q 002716 792 LTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKAD 840 (889)
Q Consensus 792 ~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~ 840 (889)
+|...+.+++..+|.+..++..+|.++...|++++|+..++++++++|+
T Consensus 260 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~ 308 (334)
T d1dcea1 260 ESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 308 (334)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf 9999999887629137999999999998789999999999999987966
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.89 E-value=1.5e-23 Score=165.08 Aligned_cols=189 Identities=10% Similarity=-0.110 Sum_probs=82.0
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHCCCC-CHHHH-HHHHHHHHHC
Q ss_conf 488997510870389999988560399880448999999982068--9999999999984789-98899-9999999811
Q 002716 450 WMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQN--VEAALAEINRILGFKL-ALECL-ELRFCFFLAL 525 (889)
Q Consensus 450 ~~~~~~~~~~~~~~A~~~l~~al~~dp~~~~a~~~la~~~~~~g~--~~~Al~~l~kal~~~p-~~~~l-~~~a~~~~~~ 525 (889)
..+...+.+ .+|+..++++++.+|++..+|..+|.++...++ +++|+..+++++..+| +...+ ...|.++...
T Consensus 81 ~~~~~~~~~---~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 157 (334)
T d1dcea1 81 SPEESAALV---KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAA 157 (334)
T ss_dssp CHHHHHHHH---HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHH---HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC
T ss_conf 347787789---99999999999868886798988648998843042899999999998559212111105789998744
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHH
Q ss_conf 21999999999999749997002434889999999999932354798999763211555540318999999843898758
Q 002716 526 EDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV 605 (889)
Q Consensus 526 g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~ 605 (889)
+.+++|+..+++++..+|.+. .+++.+|.++...|++++|...+ .+++...|....
T Consensus 158 ~~~~~Al~~~~~~i~~~p~~~------~a~~~l~~~~~~~~~~~~A~~~~------------------~~~~~~~~~~~~ 213 (334)
T d1dcea1 158 VAPAEELAFTDSLITRNFSNY------SSWHYRSCLLPQLHPQPDSGPQG------------------RLPENVLLKELE 213 (334)
T ss_dssp CCHHHHHHHHHTTTTTTCCCH------HHHHHHHHHHHHHSCCCCSSSCC------------------SSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCH------HHHHHHHHHHHHHCCHHHHHHHH------------------HHHHHHHHHHHH
T ss_conf 552899999999887189879------99999999999826889899988------------------776776899999
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 9999889999809988999999999980999199999988999955879999999999980188
Q 002716 606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 669 (889)
Q Consensus 606 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p 669 (889)
....+...+..+++...+.+++...|.....+..+|.++...|++.+|+..+.+++..+|
T Consensus 214 ----~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 273 (334)
T d1dcea1 214 ----LVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENK 273 (334)
T ss_dssp ----HHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred ----HHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf ----999998824414889999988771866056788799999998669999999998876291
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=1.1e-19 Score=140.04 Aligned_cols=286 Identities=11% Similarity=-0.054 Sum_probs=178.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC-C-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 04489999999820689999999999984789-9-----88999999999811219999999999997499970024348
Q 002716 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKL-A-----LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRV 552 (889)
Q Consensus 479 ~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~-----~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 552 (889)
+.....+|.+++..|++++|+..+++++...| + ..++..+|.++...|++++|+..+++++...+.........
T Consensus 12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 91 (366)
T d1hz4a_ 12 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 91 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 99999999999988899999999999985486899679999999999999987999999999999999987501148999
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCC--------CCCHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 899999999999323547989997632115555403189999998438--------987589999889999809988999
Q 002716 553 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD--------APKGVLYFRQSLLLLRLNCPEAAM 624 (889)
Q Consensus 553 ~a~~~lg~~~~~~g~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~ 624 (889)
.+...++.++...+++..+...+ .+++... +.....+..+|.++...|+++.+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~a~~~~------------------~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~ 153 (366)
T d1hz4a_ 92 WSLIQQSEILFAQGFLQTAWETQ------------------EKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE 153 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 99988878878888899999889------------------999998675034125678889988878999814566668
Q ss_pred HHHHHHHHCCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 999999980999-----199999988999955879999999999980188849999999999974799876024666599
Q 002716 625 RSLQLARQHAAS-----DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLE 699 (889)
Q Consensus 625 ~~l~~al~~~p~-----~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~ 699 (889)
..+.++....+. ....+...+..+...+++.++...+.++....+.. +
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~-------------~-------------- 206 (366)
T d1hz4a_ 154 ASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG-------------K-------------- 206 (366)
T ss_dssp HHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS-------------C--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------C--------------
T ss_conf 9999988876630024689999888888876466788889999999999873-------------1--------------
Q ss_pred HHHCCHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC------HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 983013310752599999899999739968999999998733853------59998999999818999999999999998
Q 002716 700 DALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT------RAHQGLARVHFLKNNKTTAYEEMTKLIKK 773 (889)
Q Consensus 700 ~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~------~a~~~La~~~~~~g~~~~A~~~~~~al~~ 773 (889)
.........+..+|.++...|++++|...+++++...+. ..+.++|.++...|++++|...+++++..
T Consensus 207 ------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 280 (366)
T d1hz4a_ 207 ------YHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN 280 (366)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf ------15726999999999999860448989999999997622466677788999999998758799999999999988
Q ss_pred HCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 316999999998139978999999898834999918999999999967998999999999984379
Q 002716 774 ARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKA 839 (889)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p 839 (889)
.. .....|....++..+|.++...|++++|+..+++++++.+
T Consensus 281 ~~------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~ 322 (366)
T d1hz4a_ 281 AR------------------------SLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 322 (366)
T ss_dssp HH------------------------HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HH------------------------HCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 76------------------------4266747999999999999987899999999999999765
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=9.9e-20 Score=140.42 Aligned_cols=219 Identities=16% Similarity=0.071 Sum_probs=107.8
Q ss_pred CHHHHHHHHHHHHCCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCH
Q ss_conf 89999999999984789-----9889999999998112199999999999974999700243488999999999993235
Q 002716 494 NVEAALAEINRILGFKL-----ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNW 568 (889)
Q Consensus 494 ~~~~Al~~l~kal~~~p-----~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~g~~ 568 (889)
+.+.|+..+++++...+ ....++.+|.+|...|++++|+..|++++.++|++. .+++.+|.++...|++
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~------~a~~~lg~~~~~~g~~ 87 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP------EVFNYLGIYLTQAGNF 87 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCH------HHHHHHCHHHHHHHHH
T ss_conf 9999999999998763369999999999999999987999999999998543499988------9996004278887778
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 47989997632115555403189999998438987589999889999809988999999999980999199999988999
Q 002716 569 TIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWIL 648 (889)
Q Consensus 569 ~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~ 648 (889)
++|+..+ +++++.+|.++.++..+|.++..+|++++|+..++++++..|.+......++...
T Consensus 88 ~~A~~~~------------------~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 149 (259)
T d1xnfa_ 88 DAAYEAF------------------DSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAE 149 (259)
T ss_dssp HHHHHHH------------------HHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 8752344------------------6899987611115888999999876679999999999865300078889999999
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHH----CCHHHHHHHHHHHHHH
Q ss_conf 955879999999999980188849999999999974799876024666599983013310----7525999998999997
Q 002716 649 YDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR----LRKGQALNNLGSVYVD 724 (889)
Q Consensus 649 ~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~----~~~~~~~~~Lg~~y~~ 724 (889)
...+....+...........+....+.. ... ..+.. ......+.+...+... .....++.++|.+|..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~ 221 (259)
T d1xnfa_ 150 QKLDEKQAKEVLKQHFEKSDKEQWGWNI-VEF--YLGNI-----SEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLS 221 (259)
T ss_dssp HHHCHHHHHHHHHHHHHHSCCCSTHHHH-HHH--HTTSS-----CHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHH--HHHHH-----HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 8853587899999876403144434557-788--88887-----777789999999998664084509999999999998
Q ss_pred CCCHHHHHHHHHHHHCCCCC
Q ss_conf 39968999999998733853
Q 002716 725 CGQLDLAADCYSNALKIRHT 744 (889)
Q Consensus 725 ~g~~~~A~~~~~~al~~~p~ 744 (889)
.|++++|+.+|++++..+|.
T Consensus 222 ~g~~~~A~~~~~~al~~~p~ 241 (259)
T d1xnfa_ 222 LGDLDSATALFKLAVANNVH 241 (259)
T ss_dssp TTCHHHHHHHHHHHHTTCCT
T ss_pred CCCHHHHHHHHHHHHHCCCC
T ss_conf 78999999999999983997
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=5e-19 Score=135.87 Aligned_cols=173 Identities=14% Similarity=0.033 Sum_probs=88.0
Q ss_pred HCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 03998804489999999820689999999999984789-98899999999981121999999999999749997002434
Q 002716 473 ALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGR 551 (889)
Q Consensus 473 ~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 551 (889)
+++|+++.+|..+|.++...|++++|+..|++++..+| +..++..+|.++..+|++++|+..++++++.+|++.
T Consensus 65 ~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----- 139 (259)
T d1xnfa_ 65 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP----- 139 (259)
T ss_dssp HHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----
T ss_pred CCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-----
T ss_conf 349998899960042788877788752344689998761111588899999987667999999999986530007-----
Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHH----HHCCHHHHHHHH
Q ss_conf 8899999999999323547989997632115555403189999998438987589999889999----809988999999
Q 002716 552 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLL----RLNCPEAAMRSL 627 (889)
Q Consensus 552 ~~a~~~lg~~~~~~g~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~----~~g~~~~A~~~l 627 (889)
.....++..+...+....+.... .......+.... + .+...+. ..+..+.+...+
T Consensus 140 -~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~ 198 (259)
T d1xnfa_ 140 -FRSLWLYLAEQKLDEKQAKEVLK------------------QHFEKSDKEQWG-W-NIVEFYLGNISEQTLMERLKADA 198 (259)
T ss_dssp -HHHHHHHHHHHHHCHHHHHHHHH------------------HHHHHSCCCSTH-H-HHHHHHTTSSCHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHH------------------HHHHCCCHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -88899999998853587899999------------------876403144434-5-57788888877777899999999
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCH
Q ss_conf 99998099919999998899995587999999999998018884
Q 002716 628 QLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (889)
Q Consensus 628 ~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 671 (889)
.......|....+++.+|.++...|++++|+..|++++..+|+.
T Consensus 199 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 242 (259)
T d1xnfa_ 199 TDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 242 (259)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
T ss_conf 98664084509999999999998789999999999999839977
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=2.7e-17 Score=124.70 Aligned_cols=283 Identities=12% Similarity=-0.063 Sum_probs=157.5
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCC
Q ss_conf 99999998136887123499999999999980860257668899865088078999985123114852048899751087
Q 002716 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCE 460 (889)
Q Consensus 381 ~~~~a~~~lG~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~~~ 460 (889)
..+......|.+++..|++++|+..|++++...+.......
T Consensus 10 ~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~--------------------------------------- 50 (366)
T d1hz4a_ 10 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSR--------------------------------------- 50 (366)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHH---------------------------------------
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHH---------------------------------------
T ss_conf 13999999999999888999999999999854868996799---------------------------------------
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC-------CHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 03899999885603998804489999999820689999999999984789-------98899999999981121999999
Q 002716 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-------ALECLELRFCFFLALEDYQAALC 533 (889)
Q Consensus 461 ~~~A~~~l~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-------~~~~l~~~a~~~~~~g~~~~A~~ 533 (889)
..++..+|.++...|++++|+..+++++...+ ....+..++..+...|++..|..
T Consensus 51 ------------------~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 112 (366)
T d1hz4a_ 51 ------------------IVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWE 112 (366)
T ss_dssp ------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ------------------99999999999987999999999999999987501148999999888788788888999998
Q ss_pred HHHHHHHHCCCCCC--HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCC-----CHHH
Q ss_conf 99999974999700--2434889999999999932354798999763211555540318999999843898-----7589
Q 002716 534 DVQAILTLSPDYRM--FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP-----KGVL 606 (889)
Q Consensus 534 ~~~~al~~~p~~~~--~~~~~~a~~~lg~~~~~~g~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~-----~~~~ 606 (889)
.+.+++...+.... ..........+|.++...|+++.+..++ .+++...+. ....
T Consensus 113 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~------------------~~~~~~~~~~~~~~~~~~ 174 (366)
T d1hz4a_ 113 TQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASA------------------RSGIEVLSSYQPQQQLQC 174 (366)
T ss_dssp HHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHH------------------HHHHHHHHHHHHHHHHHH
T ss_conf 89999998675034125678889988878999814566668999------------------998887663002468999
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHCCCC-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCH-HHHHHHH
Q ss_conf 999889999809988999999999980999-------19999998899995587999999999998018884-9999999
Q 002716 607 YFRQSLLLLRLNCPEAAMRSLQLARQHAAS-------DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKA 678 (889)
Q Consensus 607 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~-------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la 678 (889)
+...+..+...+++..+...+.++...... ....+...|.++...|++++|...+++++...+.. .
T Consensus 175 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------ 248 (366)
T d1hz4a_ 175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNH------ 248 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCG------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCH------
T ss_conf 98888888764667888899999999998731157269999999999998604489899999999976224666------
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC------CC--HHHHHH
Q ss_conf 9999747998760246665999830133107525999998999997399689999999987338------53--599989
Q 002716 679 YALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR------HT--RAHQGL 750 (889)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~------p~--~a~~~L 750 (889)
.....+.++|.++...|++++|...+++++... |. .++..+
T Consensus 249 -------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 297 (366)
T d1hz4a_ 249 -------------------------------FLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLL 297 (366)
T ss_dssp -------------------------------GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -------------------------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf -------------------------------7778899999999875879999999999998876426674799999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 9999981899999999999999831
Q 002716 751 ARVHFLKNNKTTAYEEMTKLIKKAR 775 (889)
Q Consensus 751 a~~~~~~g~~~~A~~~~~~al~~~~ 775 (889)
|.+|...|++++|...++++++..+
T Consensus 298 a~~~~~~g~~~~A~~~l~~Al~l~~ 322 (366)
T d1hz4a_ 298 NQLYWQAGRKSDAQRVLLDALKLAN 322 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 9999987899999999999999765
|
| >d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: B-cell lymphoma 6 (Bcl6) protein BTB domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=1e-20 Score=146.80 Aligned_cols=102 Identities=21% Similarity=0.347 Sum_probs=94.7
Q ss_pred CCCCCCCCEEEEECCEEEEEHHHHHHHCCHHHHHHHCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 89995432799967928870299984149543242138877888671471699989999999989562598889998889
Q 002716 176 SGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLL 255 (889)
Q Consensus 176 ~~~~~~~Dv~~~v~~~~~~~hr~iLaa~s~~f~~mf~~~~~e~~~~~i~l~~~~~~~~~~~~~l~~~Yt~~l~~~~~~~~ 255 (889)
..++.+|||++.++|++|+|||.||+++|+||++||.+++.|+....+.++ ++++++|..+++|+|||++. ++.+++
T Consensus 20 ~~~~~~~Dv~l~v~~~~~~~Hk~vLa~~S~~F~~~f~~~~~e~~~~~~~~~--~v~~~~f~~ll~~~Ytg~~~-i~~~~v 96 (122)
T d1r29a_ 20 RSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDP--EINPEGFNILLDFMYTSRLN-LREGNI 96 (122)
T ss_dssp HHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCT--TSCHHHHHHHHHHHHHSCCC-CCTTTH
T ss_pred HHCCCCEEEEEEECCEEEEEEHHHHHHCCHHHHHHHCCCHHHHCCEEEEEC--CCCHHHHHHHHHHHCCCEEC-CCHHHH
T ss_conf 836997689999999999986377662977788774224164253056525--55999999998623277006-734319
Q ss_pred HHHHHHHHHHCHHHHHHHHHHHHHH
Q ss_conf 9999999899099999999999983
Q 002716 256 LEILIFANKFCCERLKDACDRKLAS 280 (889)
Q Consensus 256 ~~ll~~A~~~~~~~l~~~~~~~l~~ 280 (889)
.+++.+|++|.++.|+..|...+.+
T Consensus 97 ~~ll~~A~~l~i~~L~~~C~~~L~~ 121 (122)
T d1r29a_ 97 MAVMATAMYLQMEHVVDTCRKFIKA 121 (122)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 9999999997958999999999973
|
| >d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=7.6e-20 Score=141.17 Aligned_cols=97 Identities=21% Similarity=0.312 Sum_probs=89.2
Q ss_pred CCCCCCCCEEEEECCEEEEEHHHHHHHCCHHHHHHHCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 89995432799967928870299984149543242138877888671471699989999999989562598889998889
Q 002716 176 SGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLL 255 (889)
Q Consensus 176 ~~~~~~~Dv~~~v~~~~~~~hr~iLaa~s~~f~~mf~~~~~e~~~~~i~l~~~~~~~~~~~~~l~~~Yt~~l~~~~~~~~ 255 (889)
..++.+|||++.|+|++|+|||.|||++|+||++||.+++ .+|+++ ++++++|+.+++|+|||++. ++.+++
T Consensus 23 ~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~lf~~~~-----~~i~~~--~v~~~~f~~ll~~~Ytg~i~-l~~~~v 94 (121)
T d1buoa_ 23 RLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNS-----QHYTLD--FLSPKTFQQILEYAYTATLQ-AKAEDL 94 (121)
T ss_dssp HHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSCC-----SEEEEC--SSCHHHHHHHHHHHHHSCCC-CCGGGH
T ss_pred HHCCCCEEEEEEECCEEEEEEHHHHCCCCHHHHHHCCCCC-----CEEECC--CCCHHHHHHHHHHEECCCCC-CCHHHH
T ss_conf 9329847699999999999887784025722233145765-----145327--78979999997741746207-868899
Q ss_pred HHHHHHHHHHCHHHHHHHHHHHHHH
Q ss_conf 9999999899099999999999983
Q 002716 256 LEILIFANKFCCERLKDACDRKLAS 280 (889)
Q Consensus 256 ~~ll~~A~~~~~~~l~~~~~~~l~~ 280 (889)
.+++.+|++|.++.|++.|...+.+
T Consensus 95 ~~ll~~A~~l~~~~L~~~C~~~L~~ 119 (121)
T d1buoa_ 95 DDLLYAAEILEIEYLEEQCLKMLET 119 (121)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 9999999995988999999999972
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=2.6e-18 Score=131.29 Aligned_cols=206 Identities=10% Similarity=-0.043 Sum_probs=123.3
Q ss_pred CCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC----CHHHHHHHHHH
Q ss_conf 85204889975108703899999885603998804489999999820689999999999984789----98899999999
Q 002716 446 TPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL----ALECLELRFCF 521 (889)
Q Consensus 446 ~~~g~~~~~~~~~~~~~~A~~~l~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p----~~~~l~~~a~~ 521 (889)
.++|.++..++.+ +++ |++++..+|....++...+.++ ...|..+++.+++...... ........+.+
T Consensus 24 ~~la~~~~~~~~l---~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l 95 (497)
T d1ya0a1 24 LGPAEVWTSRQAL---QDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQAKNRANPNRSEVQANLSLFL 95 (497)
T ss_dssp SCSSSSHHHHHHH---HHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHHSCSSCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHCHH---HHH---HHHHHHCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 5199999997629---999---9999874930199985799999--9999999999998561645843799999999999
Q ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 98112199999999999974999700243488999999999993235479899976321155554031899999984389
Q 002716 522 FLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA 601 (889)
Q Consensus 522 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p 601 (889)
+...+.|+.|+..+++.+.++|++. .++..+|..+...++++.|...+ .+++..+|
T Consensus 96 ~~a~~~Y~~ai~~l~~~~~l~~~~~------~~~~~lg~~~~~~~~~~~A~~~~------------------~~al~~~~ 151 (497)
T d1ya0a1 96 EAASGFYTQLLQELCTVFNVDLPCR------VKSSQLGIISNKQTHTSAIVKPQ------------------SSSCSYIC 151 (497)
T ss_dssp HHHHHHHHHHHHHHTC-------------------------------------C------------------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHHHHCCCHHHHHHHH------------------HHHHCCCH
T ss_conf 9999999999999999878991139------99998579987589999999999------------------98827889
Q ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCH-HHHHHHHHH
Q ss_conf 8758999988999980998899999999998099919999998899995587999999999998018884-999999999
Q 002716 602 PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYA 680 (889)
Q Consensus 602 ~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~ 680 (889)
. ..+..+|.++...|++++|+.+|+++++..|++...++.+|.++...|++.+|+.+|.+++..+|.+ .++.+++.+
T Consensus 152 ~--~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~ 229 (497)
T d1ya0a1 152 Q--HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA 229 (497)
T ss_dssp H--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 9--99999999999802478999999999987899659999999999986999999999999981799978999999999
Q ss_pred HHHCC
Q ss_conf 99747
Q 002716 681 LADSS 685 (889)
Q Consensus 681 ~~~~~ 685 (889)
+....
T Consensus 230 ~~~~~ 234 (497)
T d1ya0a1 230 LSKAL 234 (497)
T ss_dssp HHHHT
T ss_pred HHHHH
T ss_conf 98753
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=3.7e-18 Score=130.23 Aligned_cols=224 Identities=7% Similarity=-0.101 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 79999999973240999999999813688712349999999999998086025766889986508807899998512311
Q 002716 365 TVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISS 444 (889)
Q Consensus 365 ~~~~l~~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 444 (889)
+...+++++...++. +.++..+|.++..++++++| |++++..++.++....+.....+..
T Consensus 5 A~q~~~qA~~l~p~~---a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw~~~-------------- 64 (497)
T d1ya0a1 5 SAQYLRQAEVLKADM---TDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLWNHA-------------- 64 (497)
T ss_dssp HHHHHHHHHHHHGGG---TCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHHHHH--------------
T ss_pred HHHHHHHHHHCCCCC---HHHHHHHHHHHHHHCHHHHH---HHHHHHCCHHHHHHHHHHHHHHHHH--------------
T ss_conf 999999998719997---99995199999997629999---9999874930199985799999999--------------
Q ss_pred CCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC--H-HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC-CHHHHHHHHH
Q ss_conf 4852048899751087038999998856039988--0-4489999999820689999999999984789-9889999999
Q 002716 445 VTPLGWMYQERSLYCEGDKRWEDLDKATALDPTL--S-YPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFC 520 (889)
Q Consensus 445 ~~~~g~~~~~~~~~~~~~~A~~~l~~al~~dp~~--~-~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~ 520 (889)
| ..++..+++..+..... . .....++.+....+.|+.|+..+.++.+.+| +...+..+|.
T Consensus 65 -------------y---~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~ 128 (497)
T d1ya0a1 65 -------------F---KNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGI 128 (497)
T ss_dssp -------------T---HHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-----------------
T ss_pred -------------H---HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf -------------9---999999998561645843799999999999999999999999999987899113999998579
Q ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCC
Q ss_conf 99811219999999999997499970024348899999999999323547989997632115555403189999998438
Q 002716 521 FFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD 600 (889)
Q Consensus 521 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~ 600 (889)
.+...|+++.|+..+++++..+|. .++..+|.++...+++++|..++ .++++.+
T Consensus 129 ~~~~~~~~~~A~~~~~~al~~~~~--------~~~~~LG~l~~~~~~~~~A~~~y------------------~~A~~l~ 182 (497)
T d1ya0a1 129 ISNKQTHTSAIVKPQSSSCSYICQ--------HCLVHLGDIARYRNQTSQAESYY------------------RHAAQLV 182 (497)
T ss_dssp --------------CCHHHHHHHH--------HHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHC
T ss_pred HHHHCCCHHHHHHHHHHHHCCCHH--------HHHHHHHHHHHHCCCHHHHHHHH------------------HHHHHHC
T ss_conf 987589999999999988278899--------99999999999802478999999------------------9999878
Q ss_pred CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 98758999988999980998899999999998099919999998899995
Q 002716 601 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYD 650 (889)
Q Consensus 601 p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~ 650 (889)
|.++..++.+|.++...|++.+|+.+|.+++...|..+.++.+++.++..
T Consensus 183 P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 183 PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 99659999999999986999999999999981799978999999999987
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.63 E-value=2.2e-14 Score=105.86 Aligned_cols=25 Identities=8% Similarity=0.021 Sum_probs=9.0
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 9999967998999999999984379
Q 002716 815 AAVLMDSHKENEAIAELSRAIAFKA 839 (889)
Q Consensus 815 a~~~~~~g~~~eA~~~l~kal~~~p 839 (889)
+.++...+++..|...++++++..|
T Consensus 206 ~~~~l~~~d~~~A~~~~~~~~~~~~ 230 (290)
T d1qqea_ 206 GLCQLAATDAVAAARTLQEGQSEDP 230 (290)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHCC
T ss_conf 9999984659999999999997597
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.63 E-value=2.9e-14 Score=105.12 Aligned_cols=25 Identities=32% Similarity=0.254 Sum_probs=9.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 9981368871234999999999999
Q 002716 386 FHQLGCVRLLRKEYDEAEHLFEAAV 410 (889)
Q Consensus 386 ~~~lG~~~~~~g~~~eA~~~~~~Al 410 (889)
|.+.|.+|...|+|++|+++|++|+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~ 64 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAA 64 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9999999998869999999999999
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.59 E-value=5.5e-12 Score=90.33 Aligned_cols=185 Identities=10% Similarity=-0.081 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC-C-HHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 3899999885603-998804489999999820689999999999984789-9-889999999998112199999999999
Q 002716 462 DKRWEDLDKATAL-DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-A-LECLELRFCFFLALEDYQAALCDVQAI 538 (889)
Q Consensus 462 ~~A~~~l~~al~~-dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~-~~~l~~~a~~~~~~g~~~~A~~~~~~a 538 (889)
+++...++++++. .|.....|...+......|+++.|...++++++..| + ...+...+.+....|+++.|...|+++
T Consensus 81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a 160 (308)
T d2onda1 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999999999874998799999999999861338999999999998715786999999999999827868899999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 97499970024348899999999999-32354798999763211555540318999999843898758999988999980
Q 002716 539 LTLSPDYRMFEGRVAASQLHMLVREH-IDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL 617 (889)
Q Consensus 539 l~~~p~~~~~~~~~~a~~~lg~~~~~-~g~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~ 617 (889)
+...|... ..+...+..... .++.+.|...+ ++++...|.++..+...+......
T Consensus 161 l~~~~~~~------~~~~~~a~~e~~~~~~~~~a~~i~------------------e~~l~~~p~~~~~w~~y~~~~~~~ 216 (308)
T d2onda1 161 REDARTRH------HVYVTAALMEYYCSKDKSVAFKIF------------------ELGLKKYGDIPEYVLAYIDYLSHL 216 (308)
T ss_dssp HTSTTCCT------HHHHHHHHHHHHTSCCHHHHHHHH------------------HHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHCCCCH------HHHHHHHHHHHHHCCCHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 98088867------999999999987655778999999------------------999986100388999999999986
Q ss_pred CCHHHHHHHHHHHHHCCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 998899999999998099919----99999889999558799999999999801888
Q 002716 618 NCPEAAMRSLQLARQHAASDH----ERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (889)
Q Consensus 618 g~~~~A~~~l~~al~~~p~~~----~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 670 (889)
|+++.|...|+++++..|.++ ..+..........|+.+.+...++++.+..|+
T Consensus 217 g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~ 273 (308)
T d2onda1 217 NEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp CCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf 986899999999998278986899999999999999849999999999999987711
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.59 E-value=2.1e-11 Score=86.62 Aligned_cols=153 Identities=8% Similarity=-0.054 Sum_probs=78.9
Q ss_pred CHHHHHHHHHHHHCC-CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCHHHH
Q ss_conf 899999999999847-89-9889999999998112199999999999974999700243488999999999993235479
Q 002716 494 NVEAALAEINRILGF-KL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIA 571 (889)
Q Consensus 494 ~~~~Al~~l~kal~~-~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~g~~~~A 571 (889)
..++|...+++++.. .| +...+...+.+....|+++.|...|++++...|.+.. ..+...+......++.+.|
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~-----~~w~~~~~~~~~~~~~~~a 153 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT-----LVYIQYMKFARRAEGIKSG 153 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH-----HHHHHHHHHHHHHHCHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHHCCCHHHH
T ss_conf 45999999999998749987999999999998613389999999999987157869-----9999999999982786889
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 89997632115555403189999998438987589999889999-80998899999999998099919999998899995
Q 002716 572 DCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLL-RLNCPEAAMRSLQLARQHAASDHERLVYEGWILYD 650 (889)
Q Consensus 572 ~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~ 650 (889)
...+ .++++..|.....+...+.... ..|+.+.|...|++++...|.++..+...+..+..
T Consensus 154 r~i~------------------~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~ 215 (308)
T d2onda1 154 RMIF------------------KKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH 215 (308)
T ss_dssp HHHH------------------HHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHH------------------HHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999------------------9999808886799999999998765577899999999998610038899999999998
Q ss_pred CCCHHHHHHHHHHHHHCCC
Q ss_conf 5879999999999980188
Q 002716 651 TSHCEEGLRKAEESIQMKR 669 (889)
Q Consensus 651 ~g~~~eA~~~~~~al~~~p 669 (889)
.|+.+.|...|++++...|
T Consensus 216 ~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 216 LNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp TCCHHHHHHHHHHHHHSSS
T ss_pred CCCHHHHHHHHHHHHHHCC
T ss_conf 6986899999999998278
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=5.7e-13 Score=96.72 Aligned_cols=67 Identities=12% Similarity=0.191 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 9875899998899998099889999999999809991999999889999558799999999999801
Q 002716 601 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (889)
Q Consensus 601 p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 667 (889)
|.++.+++++|.+|..+|++++|+..|+++++.+|+++.+++++|.++..+|++++|+..|++++..
T Consensus 33 ~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~ 99 (192)
T d1hh8a_ 33 DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQ 99 (192)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 9889999999999998589146787899999985523466788999998542499999999999986
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=1.1e-12 Score=94.95 Aligned_cols=84 Identities=11% Similarity=0.020 Sum_probs=38.7
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999982068999999999998478998899999999981121999999999999749997002434889999999999
Q 002716 484 YRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVRE 563 (889)
Q Consensus 484 ~la~~~~~~g~~~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~ 563 (889)
.+|..+...|+|++|+..|+++ ..|++..++.+|.+|..+|++++|+..|+++++++|++. .++..+|.++.
T Consensus 10 ~~g~~~~~~~d~~~Al~~~~~i--~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~------~a~~~~g~~~~ 81 (192)
T d1hh8a_ 10 NEGVLAADKKDWKGALDAFSAV--QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLA------VAYFQRGMLYY 81 (192)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTS--SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHC--CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
T ss_conf 9999999877999999999864--898899999999999985891467878999999855234------66788999998
Q ss_pred HHHCHHHHHHHH
Q ss_conf 932354798999
Q 002716 564 HIDNWTIADCWL 575 (889)
Q Consensus 564 ~~g~~~~A~~~~ 575 (889)
.+|++++|+..+
T Consensus 82 ~~g~~~~A~~~~ 93 (192)
T d1hh8a_ 82 QTEKYDLAIKDL 93 (192)
T ss_dssp HTTCHHHHHHHH
T ss_pred HHCCHHHHHHHH
T ss_conf 542499999999
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.52 E-value=2.3e-11 Score=86.34 Aligned_cols=226 Identities=13% Similarity=0.057 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHH
Q ss_conf 99998136887123499999999999980860257668899865088078999985123114852048899751087038
Q 002716 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDK 463 (889)
Q Consensus 384 ~a~~~lG~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 463 (889)
.+++.||..++.+++|++|+++|++|.+.|+..+...++.++....... ..+ ..
T Consensus 3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~-----------------------~d~---~~ 56 (265)
T d1ouva_ 3 KELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVE-----------------------KNL---KK 56 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC-----------------------CCH---HH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCC-----------------------HHH---HH
T ss_conf 9999999999987799999999999997899999999999998099960-----------------------569---99
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH----CCCHHHHHHHH
Q ss_conf 9999988560399880448999999982----068999999999998478998899999999981----12199999999
Q 002716 464 RWEDLDKATALDPTLSYPYMYRASSLMT----KQNVEAALAEINRILGFKLALECLELRFCFFLA----LEDYQAALCDV 535 (889)
Q Consensus 464 A~~~l~~al~~dp~~~~a~~~la~~~~~----~g~~~~Al~~l~kal~~~p~~~~l~~~a~~~~~----~g~~~~A~~~~ 535 (889)
+...+..+.... .+.+...+|..+.. ..+.+.|+..++++....+ ......++..+.. ......|...+
T Consensus 57 a~~~~~~a~~~~--~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~-~~a~~~l~~~~~~~~~~~~~~~~a~~~~ 133 (265)
T d1ouva_ 57 AASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY-AEGCASLGGIYHDGKVVTRDFKKAVEYF 133 (265)
T ss_dssp HHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred HHHHHCCCCCCC--CCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHCCCCCCCCCCCCHHHHHHHHH
T ss_conf 987501222111--1112313501224321121236779888765543214-6688763433237873310157788875
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH----CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 9999749997002434889999999999932----354798999763211555540318999999843898758999988
Q 002716 536 QAILTLSPDYRMFEGRVAASQLHMLVREHID----NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQS 611 (889)
Q Consensus 536 ~~al~~~p~~~~~~~~~~a~~~lg~~~~~~g----~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la 611 (889)
..... +.+. .++..+|..+.... +...+..++ ..+.+ +.++.+.+++|
T Consensus 134 ~~~~~--~~~~------~~~~~L~~~~~~~~~~~~~~~~~~~~~------------------~~a~~--~g~~~A~~~lg 185 (265)
T d1ouva_ 134 TKACD--LNDG------DGCTILGSLYDAGRGTPKDLKKALASY------------------DKACD--LKDSPGCFNAG 185 (265)
T ss_dssp HHHHH--TTCH------HHHHHHHHHHHHTSSSCCCHHHHHHHH------------------HHHHH--TTCHHHHHHHH
T ss_pred HHHHC--CCCC------CHHHHHHHHHCCCCCCCCCCCCCHHHH------------------HCCCC--CCCCCCCCCHH
T ss_conf 55200--1110------104455556406887433422000122------------------11323--22223322113
Q ss_pred HHHHH----HCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHCC
Q ss_conf 99998----0998899999999998099919999998899995----587999999999998018
Q 002716 612 LLLLR----LNCPEAAMRSLQLARQHAASDHERLVYEGWILYD----TSHCEEGLRKAEESIQMK 668 (889)
Q Consensus 612 ~~~~~----~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~----~g~~~eA~~~~~~al~~~ 668 (889)
.++.. ..+++.|+.+|+++.+. .++.+.+.+|.+|.. ..++++|+.+|+++....
T Consensus 186 ~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 186 NMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHCCCCCCCCCCHHHHHHHHHHHHCC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 12126765431034445467665303--6899999999999839997618999999999999876
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.50 E-value=3.8e-11 Score=84.94 Aligned_cols=60 Identities=22% Similarity=0.249 Sum_probs=23.4
Q ss_pred HHHHHHHHHHH----CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHH----CCCHHHHHHHHHHHHHH
Q ss_conf 99998999997----39968999999998733853599989999998----18999999999999998
Q 002716 714 ALNNLGSVYVD----CGQLDLAADCYSNALKIRHTRAHQGLARVHFL----KNNKTTAYEEMTKLIKK 773 (889)
Q Consensus 714 ~~~~Lg~~y~~----~g~~~~A~~~~~~al~~~p~~a~~~La~~~~~----~g~~~~A~~~~~~al~~ 773 (889)
+..++|.+|.. ..++++|+.+|+++.+.....+...||.+|.. ..++.+|+.+|+++.+.
T Consensus 180 A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~ 247 (265)
T d1ouva_ 180 GCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 247 (265)
T ss_dssp HHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred CCCCHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 32211312126765431034445467665303689999999999983999761899999999999987
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=2.9e-12 Score=92.14 Aligned_cols=107 Identities=15% Similarity=0.063 Sum_probs=49.1
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 99999981121999999999999749997002434889999999999932354798999763211555540318999999
Q 002716 517 LRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQM 596 (889)
Q Consensus 517 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~l~~~~~~~dd~~sl~~~~~a 596 (889)
.+|..++..|+|++|+..|++++.++|++. .++..+|.++...|++++|...+ .++
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~~~~~~A~~~~------------------~ka 70 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELNPSNA------IYYGNRSLAYLRTECYGYALGDA------------------TRA 70 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCH------HHHHHHHHHHHHTTCHHHHHHHH------------------HHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHCCCCCHHHH------HHHHHHHHHHHHCCCCCHHHHHH------------------HHH
T ss_conf 999999995899999998660211000113------33245678887405421288889------------------999
Q ss_pred HHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 843898758999988999980998899999999998099919999998899
Q 002716 597 LESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWI 647 (889)
Q Consensus 597 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~ 647 (889)
++.+|.+..++..+|.++..+|++++|+..+++++...|++..++..++.+
T Consensus 71 l~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~ 121 (159)
T d1a17a_ 71 IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 121 (159)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 987544668779999999994999999998999987299979999999999
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.47 E-value=5.2e-13 Score=96.97 Aligned_cols=67 Identities=25% Similarity=0.315 Sum_probs=23.5
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 98804489999999820689999999999984789-98899999999981121999999999999749
Q 002716 476 PTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLS 542 (889)
Q Consensus 476 p~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~ 542 (889)
|+++.+|..+|.+|...|++++|+..+++++.++| +..++..+|.++..+|++++|+..|++++.++
T Consensus 35 p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~ 102 (201)
T d2c2la1 35 PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLA 102 (201)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 99899998178987410000012478888887188738999999999998799999999999998749
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=6.6e-12 Score=89.82 Aligned_cols=76 Identities=21% Similarity=0.299 Sum_probs=46.5
Q ss_pred HHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 5603998804489999999820689999999999984789-988999999999811219999999999997499970
Q 002716 471 ATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (889)
Q Consensus 471 al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 546 (889)
+++++|+++.+|..+|.+++..|++++|+..++++++.+| +..++..+|.++..+|++++|+..+++++.++|++.
T Consensus 36 al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~ 112 (159)
T d1a17a_ 36 AIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK 112 (159)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCH
T ss_conf 21100011333245678887405421288889999987544668779999999994999999998999987299979
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.42 E-value=4.4e-12 Score=90.95 Aligned_cols=135 Identities=13% Similarity=0.145 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHH
Q ss_conf 99981368871234999999999999808602576688998650880789999851231148520488997510870389
Q 002716 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKR 464 (889)
Q Consensus 385 a~~~lG~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A 464 (889)
.+...|..++..|+|++|+..|++|+..... ..+
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~----------------------------------------------~~~ 62 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEG----------------------------------------------SRA 62 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------------------------------------------HHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH----------------------------------------------HHH
T ss_conf 9999999999908899999999999874111----------------------------------------------166
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 9999885603998804489999999820689999999999984789-988999999999811219999999999997499
Q 002716 465 WEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSP 543 (889)
Q Consensus 465 ~~~l~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p 543 (889)
.....+....+|.....+..+|.++...|++++|+..+++++.++| ++.++..+|.++..+|++++|+..|+++++++|
T Consensus 63 ~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p 142 (169)
T d1ihga1 63 AAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP 142 (169)
T ss_dssp HSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 66557787719023999998999998640210136665544310002236777699999980479999999999998598
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCHHHH
Q ss_conf 9700243488999999999993235479
Q 002716 544 DYRMFEGRVAASQLHMLVREHIDNWTIA 571 (889)
Q Consensus 544 ~~~~~~~~~~a~~~lg~~~~~~g~~~~A 571 (889)
++. .+...++.+........++
T Consensus 143 ~n~------~~~~~l~~~~~~l~~~~~~ 164 (169)
T d1ihga1 143 EDK------AIQAELLKVKQKIKAQKDK 164 (169)
T ss_dssp TCH------HHHHHHHHHHHHHHHHHHH
T ss_pred CCH------HHHHHHHHHHHHHHHHHHH
T ss_conf 999------9999999999999989999
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=9.1e-12 Score=88.91 Aligned_cols=104 Identities=16% Similarity=0.033 Sum_probs=40.5
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 99999811219999999999997499970024348899999999999323547989997632115555403189999998
Q 002716 518 RFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQML 597 (889)
Q Consensus 518 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al 597 (889)
.|..++..|++++|+..|++++..+|++. .++..+|.++...|++++|+..+ .+++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~------------------~~al 64 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNH------VLYSNRSAAYAKKGDYQKAYEDG------------------CKTV 64 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHHTCHHHHHHHH------------------HHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCH------HHHHCCCCCCCCCCCCCCCCHHH------------------HHHH
T ss_conf 99999996999999999999886199601------34300011011000011210013------------------4677
Q ss_pred HCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 438987589999889999809988999999999980999199999988
Q 002716 598 ESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEG 645 (889)
Q Consensus 598 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg 645 (889)
+.+|.++.+++++|.++..+|++++|+..|+++++..|+++.++..++
T Consensus 65 ~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 112 (117)
T d1elwa_ 65 DLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 112 (117)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 740220267788999999812799999999999984989899999999
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=2e-11 Score=86.78 Aligned_cols=78 Identities=15% Similarity=0.032 Sum_probs=25.2
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCH
Q ss_conf 999843898758999988999980998899999999998099919999998899995587999999999998018884
Q 002716 594 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (889)
Q Consensus 594 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 671 (889)
.++++.+|.++.++..+|.++..+|++++|+..+++++..+|.++.+++.+|.++..+|++++|+..|+++++++|++
T Consensus 27 ~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~ 104 (117)
T d1elwa_ 27 SEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN 104 (117)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf 998861996013430001101100001121001346777402202677889999998127999999999999849898
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=2.8e-11 Score=85.76 Aligned_cols=140 Identities=19% Similarity=0.142 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHC
Q ss_conf 99999999981368871234999999999999808602576688998650880789999851231148520488997510
Q 002716 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY 458 (889)
Q Consensus 379 ~~~~~~a~~~lG~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~ 458 (889)
..+.+..+...|..++.+|+|++|+..|++|+...+..... .. ..
T Consensus 9 k~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~-----------~~-----------------~~------- 53 (170)
T d1p5qa1 9 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF-----------SN-----------------EE------- 53 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC-----------CS-----------------HH-------
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCC-----------CH-----------------HH-------
T ss_conf 99999999999999999699999999999998875101000-----------35-----------------77-------
Q ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 8703899999885603998804489999999820689999999999984789-988999999999811219999999999
Q 002716 459 CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQA 537 (889)
Q Consensus 459 ~~~~~A~~~l~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~ 537 (889)
......+ ....|..+|.+|+..|++++|+..+++++..+| +..++..+|.+++.+|++++|+..|++
T Consensus 54 ---~~~~~~~---------~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~ 121 (170)
T d1p5qa1 54 ---AQKAQAL---------RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQK 121 (170)
T ss_dssp ---HHHHHHH---------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---HHHHCHH---------HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ---7640646---------7999999999988642110110000000100223103467779999872229999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHCHHHH
Q ss_conf 9974999700243488999999999993235479
Q 002716 538 ILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIA 571 (889)
Q Consensus 538 al~~~p~~~~~~~~~~a~~~lg~~~~~~g~~~~A 571 (889)
++.++|++. .+...++.+....+.....
T Consensus 122 al~l~P~n~------~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 122 VLQLYPNNK------AAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHHHCSSCH------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCH------HHHHHHHHHHHHHHHHHHH
T ss_conf 997298989------9999999999999999999
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.38 E-value=1.4e-12 Score=94.18 Aligned_cols=103 Identities=17% Similarity=-0.001 Sum_probs=57.9
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 99889999999998112199999999999974999700243488999999999993235479899976321155554031
Q 002716 510 LALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 589 (889)
Q Consensus 510 p~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~l~~~~~~~dd~~s 589 (889)
|+...+...|..++..|+|++|+..|++++.++|++. .++..+|.+|...|++++|+..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~------~~~~~lg~~y~~~~~~~~Ai~~~-------------- 61 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA------VYYTNRALCYLKMQQPEQALADC-------------- 61 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH------HHHHHHHHHHHHTTCHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHHHHHHHHHHHH--------------
T ss_conf 6499999999999986999999999999998599989------99981789874100000124788--------------
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 89999998438987589999889999809988999999999980999
Q 002716 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS 636 (889)
Q Consensus 590 l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 636 (889)
.++++.+|.+..+|+++|.+|..+|++++|+..|++++...|.
T Consensus 62 ----~~al~l~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~ 104 (201)
T d2c2la1 62 ----RRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 104 (201)
T ss_dssp ----HHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf ----8888718873899999999999879999999999999874955
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=6.8e-11 Score=83.26 Aligned_cols=127 Identities=17% Similarity=0.085 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 89999999998112199999999999974999700243488999999999993235479899976321155554031899
Q 002716 513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 592 (889)
Q Consensus 513 ~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~l~~~~~~~dd~~sl~~ 592 (889)
..+...|..++..|+|++|+..|++++...|......... . ..
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~-~---------------~~--------------------- 56 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEE-A---------------QK--------------------- 56 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHH-H---------------HH---------------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHH-H---------------HH---------------------
T ss_conf 9999999999996999999999999988751010003577-7---------------64---------------------
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCH-
Q ss_conf 9999843898758999988999980998899999999998099919999998899995587999999999998018884-
Q 002716 593 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF- 671 (889)
Q Consensus 593 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~- 671 (889)
.. +....++.++|.+|..+|++++|+..+++++..+|.++.+++.+|.++..+|++++|+..|+++++++|++
T Consensus 57 -~~-----~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~ 130 (170)
T d1p5qa1 57 -AQ-----ALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK 130 (170)
T ss_dssp -HH-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH
T ss_pred -HC-----HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf -06-----467999999999988642110110000000100223103467779999872229999999999997298989
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999999
Q 002716 672 EAFFLKAYALA 682 (889)
Q Consensus 672 ~a~~~la~~~~ 682 (889)
.+...++.+..
T Consensus 131 ~~~~~l~~~~~ 141 (170)
T d1p5qa1 131 AAKTQLAVCQQ 141 (170)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.30 E-value=2e-10 Score=80.18 Aligned_cols=139 Identities=16% Similarity=0.129 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCC
Q ss_conf 99999999813688712349999999999998086025766889986508807899998512311485204889975108
Q 002716 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYC 459 (889)
Q Consensus 380 ~~~~~a~~~lG~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~~ 459 (889)
...+..+...|..++..|+|.+|+..|++|+..-+.... .....
T Consensus 12 ~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~-----------------------------~~~~~------- 55 (168)
T d1kt1a1 12 LEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYG-----------------------------LSEKE------- 55 (168)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS-----------------------------CCHHH-------
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC-----------------------------CCHHH-------
T ss_conf 999999999999999959999999999999999987500-----------------------------12455-------
Q ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 703899999885603998804489999999820689999999999984789-9889999999998112199999999999
Q 002716 460 EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAI 538 (889)
Q Consensus 460 ~~~~A~~~l~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~a 538 (889)
...... .....|.++|.+|+..|++++|+..+++++..+| +..+++.+|.++..+|++++|+..|+++
T Consensus 56 --~~~~~~---------~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~a 124 (168)
T d1kt1a1 56 --SKASES---------FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKV 124 (168)
T ss_dssp --HHHHHH---------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHCCH---------HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf --531064---------679999849999877622011000223222013104889998899998827899999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHCHHHH
Q ss_conf 974999700243488999999999993235479
Q 002716 539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIA 571 (889)
Q Consensus 539 l~~~p~~~~~~~~~~a~~~lg~~~~~~g~~~~A 571 (889)
+.++|++. .+...++.+....+++.+.
T Consensus 125 l~l~P~n~------~~~~~l~~~~~~~~~~~e~ 151 (168)
T d1kt1a1 125 LEVNPQNK------AARLQIFMCQKKAKEHNER 151 (168)
T ss_dssp HHSCTTCH------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCH------HHHHHHHHHHHHHHHHHHH
T ss_conf 98598989------9999999999999869999
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.29 E-value=2.3e-10 Score=79.88 Aligned_cols=136 Identities=13% Similarity=0.047 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHC
Q ss_conf 99999999981368871234999999999999808602576688998650880789999851231148520488997510
Q 002716 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY 458 (889)
Q Consensus 379 ~~~~~~a~~~lG~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~ 458 (889)
..+.+..+...|..++..|+|.+|+..|++|+..-..... ..
T Consensus 13 ~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~-----------~~--------------------------- 54 (153)
T d2fbna1 13 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEE-----------WD--------------------------- 54 (153)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTT-----------CC---------------------------
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHH-----------HH---------------------------
T ss_conf 9999999999999999959999999999987760730011-----------10---------------------------
Q ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 8703899999885603998804489999999820689999999999984789-988999999999811219999999999
Q 002716 459 CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQA 537 (889)
Q Consensus 459 ~~~~~A~~~l~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~ 537 (889)
+.........+. ...+..+|.+|+.+|++++|+..+++++..+| +..+++.+|.++..+|++++|+..|++
T Consensus 55 ---~~~~~~~~~~~~-----~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~ 126 (153)
T d2fbna1 55 ---DQILLDKKKNIE-----ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYK 126 (153)
T ss_dssp ---CHHHHHHHHHHH-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf ---577887631078-----899961999999846530111010001000000012467768999996899999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99749997002434889999999999932
Q 002716 538 ILTLSPDYRMFEGRVAASQLHMLVREHID 566 (889)
Q Consensus 538 al~~~p~~~~~~~~~~a~~~lg~~~~~~g 566 (889)
+++++|++. .+...++.+...++
T Consensus 127 al~l~P~n~------~~~~~l~~~~~kl~ 149 (153)
T d2fbna1 127 AASLNPNNL------DIRNSYELCVNKLK 149 (153)
T ss_dssp HHHHSTTCH------HHHHHHHHHHHHHH
T ss_pred HHHHCCCCH------HHHHHHHHHHHHHH
T ss_conf 998298989------99999999999999
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.27 E-value=5.1e-11 Score=84.08 Aligned_cols=81 Identities=9% Similarity=-0.075 Sum_probs=42.8
Q ss_pred CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCH-HHHHHHH
Q ss_conf 898758999988999980998899999999998099919999998899995587999999999998018884-9999999
Q 002716 600 DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKA 678 (889)
Q Consensus 600 ~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la 678 (889)
.|.....+.++|.++..+|++++|+..++++++.+|.++.+++.+|.++...|++++|+..|+++++++|++ .+...++
T Consensus 73 ~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~ 152 (169)
T d1ihga1 73 QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELL 152 (169)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 90239999989999986402101366655443100022367776999999804799999999999985989999999999
Q ss_pred HH
Q ss_conf 99
Q 002716 679 YA 680 (889)
Q Consensus 679 ~~ 680 (889)
.+
T Consensus 153 ~~ 154 (169)
T d1ihga1 153 KV 154 (169)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.27 E-value=4.1e-10 Score=78.24 Aligned_cols=75 Identities=12% Similarity=0.066 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCH-HHHHHHHHH
Q ss_conf 999988999980998899999999998099919999998899995587999999999998018884-999999999
Q 002716 606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYA 680 (889)
Q Consensus 606 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~ 680 (889)
++.++|.+|..+|++++|+..+++++..+|.+..+++.+|.++..+|++++|+..|++++.++|++ .+...++.+
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~ 141 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMC 141 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 9984999987762201100022322201310488999889999882789999999999998598989999999999
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.23 E-value=3.9e-10 Score=78.39 Aligned_cols=125 Identities=6% Similarity=-0.047 Sum_probs=73.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 99999999811219999999999997499970024348899999999999323547989997632115555403189999
Q 002716 515 LELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 594 (889)
Q Consensus 515 l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~l~~~~~~~dd~~sl~~~~ 594 (889)
+...|..++..|+|.+|+..|++++...+......... .. .. .
T Consensus 20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~-~~-------------~~-----------------------~ 62 (153)
T d2fbna1 20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQI-LL-------------DK-----------------------K 62 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHH-HH-------------HH-----------------------H
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHH-HH-------------HH-----------------------H
T ss_conf 99999999995999999999998776073001110577-88-------------76-----------------------3
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCH-HH
Q ss_conf 99843898758999988999980998899999999998099919999998899995587999999999998018884-99
Q 002716 595 QMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EA 673 (889)
Q Consensus 595 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a 673 (889)
..+ ...++.++|.+|..+|++++|+..+++++..+|.+..+++.+|.++..+|++++|+..|+++++++|++ .+
T Consensus 63 ~~~-----~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~ 137 (153)
T d2fbna1 63 KNI-----EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI 137 (153)
T ss_dssp HHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHH-----HHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf 107-----889996199999984653011101000100000001246776899999689999999999999829898999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q 002716 674 FFLKAYAL 681 (889)
Q Consensus 674 ~~~la~~~ 681 (889)
...+..+.
T Consensus 138 ~~~l~~~~ 145 (153)
T d2fbna1 138 RNSYELCV 145 (153)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999999
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=2.1e-10 Score=80.14 Aligned_cols=64 Identities=8% Similarity=0.102 Sum_probs=29.5
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCH
Q ss_conf 9988999980998899999999998099919999998899995587999999999998018884
Q 002716 608 FRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (889)
Q Consensus 608 ~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 671 (889)
..+|..++..|++++|+.+|+++++.+|+++.++.++|.++..+|++++|+..+++++.++|++
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~ 71 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN 71 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf 9999999985999999999999988496458999868899988186077899999999868012
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=8.6e-10 Score=76.16 Aligned_cols=61 Identities=25% Similarity=0.204 Sum_probs=23.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 999899999739968999999998733853--5999899999981899999999999999831
Q 002716 715 LNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKAR 775 (889)
Q Consensus 715 ~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~ 775 (889)
+.++|..++..|+|++|+.+|+++++++|. .++.++|.+|..+|++++|+..++++++..|
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~ 69 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 999999999859999999999999884964589998688999881860778999999998680
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.16 E-value=3e-10 Score=79.12 Aligned_cols=85 Identities=12% Similarity=0.076 Sum_probs=47.2
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 88997510870389999988560399880448999999982068999999999998478998899999999981121999
Q 002716 451 MYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQA 530 (889)
Q Consensus 451 ~~~~~~~~~~~~~A~~~l~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g~~~~ 530 (889)
.+...+.| ++|+..|+++++++|+++.++..+|.++...+++..+.. ..+.+++
T Consensus 6 ~~~r~~~f---e~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e-----------------------~~~~~~~ 59 (145)
T d1zu2a1 6 EFDRILLF---EQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISD-----------------------AKQMIQE 59 (145)
T ss_dssp SHHHHHHH---HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHH-----------------------HHHHHHH
T ss_pred HHHHHCCH---HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHH
T ss_conf 99987369---999999999986188310899999999987621333367-----------------------7887888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999997499970024348899999999999323
Q 002716 531 ALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDN 567 (889)
Q Consensus 531 A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~g~ 567 (889)
|+..|+++++++|++. .+++.+|.++...|.
T Consensus 60 Ai~~~~kAl~l~P~~~------~a~~~lG~~y~~~g~ 90 (145)
T d1zu2a1 60 AITKFEEALLIDPKKD------EAVWCIGNAYTSFAF 90 (145)
T ss_dssp HHHHHHHHHHHCTTCH------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHH------HHHHHHHHHHHHCCC
T ss_conf 9999999887301205------877668999987010
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=3.4e-10 Score=78.73 Aligned_cols=97 Identities=15% Similarity=0.135 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHCCCC---CHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 3899999885603998804489999999820---689999999999984789---9889999999998112199999999
Q 002716 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTK---QNVEAALAEINRILGFKL---ALECLELRFCFFLALEDYQAALCDV 535 (889)
Q Consensus 462 ~~A~~~l~~al~~dp~~~~a~~~la~~~~~~---g~~~~Al~~l~kal~~~p---~~~~l~~~a~~~~~~g~~~~A~~~~ 535 (889)
++|...|+++++++|+++.+++.+|.+++.. +++++|+..+++++..+| ..++++.+|.+|..+|++++|+..|
T Consensus 16 ~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~ 95 (122)
T d1nzna_ 16 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 95 (122)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999988329998999999999999851267899999999999860699319999999999999973169999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99997499970024348899999999999
Q 002716 536 QAILTLSPDYRMFEGRVAASQLHMLVREH 564 (889)
Q Consensus 536 ~~al~~~p~~~~~~~~~~a~~~lg~~~~~ 564 (889)
++++.++|++. .+..+++.+...
T Consensus 96 ~~aL~~~P~~~------~A~~l~~~I~~~ 118 (122)
T d1nzna_ 96 RGLLQTEPQNN------QAKELERLIDKA 118 (122)
T ss_dssp HHHHHHCTTCH------HHHHHHHHHHHH
T ss_pred HHHHHHCCCCH------HHHHHHHHHHHH
T ss_conf 99997690989------999999999998
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.14 E-value=4.8e-10 Score=77.78 Aligned_cols=70 Identities=10% Similarity=-0.012 Sum_probs=25.8
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 9998438987589999889999809988999999999980999199999988999955879999999999
Q 002716 594 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEE 663 (889)
Q Consensus 594 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 663 (889)
++++..+|.++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|++.+++
T Consensus 40 ~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~A~~~l~~ 109 (112)
T d1hxia_ 40 EAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRA 109 (112)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 6101121111001233545641012587741000001111110000037899999997899999999999
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.13 E-value=6.4e-10 Score=76.98 Aligned_cols=44 Identities=9% Similarity=-0.041 Sum_probs=26.1
Q ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCHHHH
Q ss_conf 98112199999999999974999700243488999999999993235479
Q 002716 522 FLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIA 571 (889)
Q Consensus 522 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~g~~~~A 571 (889)
+.+++.|++|+..|++++.++|++. .++..+|.++...+++..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~~------~~~~~~g~~l~~~~~~~~~ 50 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLDA------DNLTRWGGVLLELSQFHSI 50 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHHHHHSCH
T ss_pred HHHHCCHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHHHHHHHH
T ss_conf 9987369999999999986188310------8999999999876213333
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.10 E-value=7.6e-10 Score=76.52 Aligned_cols=87 Identities=15% Similarity=-0.013 Sum_probs=40.3
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9999999820689999999999984789-988999999999811219999999999997499970024348899999999
Q 002716 483 MYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLV 561 (889)
Q Consensus 483 ~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~ 561 (889)
+.+|..++..|++++|+..+++++..+| ++.++..+|.++...|++++|+..++++++++|++. .++..+|.+
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~------~a~~~la~~ 93 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI------AVHAALAVS 93 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC------CCHHHHHHH
T ss_conf 99999999876058999988610112111100123354564101258774100000111111000------003789999
Q ss_pred HHHHHCHHHHHHHH
Q ss_conf 99932354798999
Q 002716 562 REHIDNWTIADCWL 575 (889)
Q Consensus 562 ~~~~g~~~~A~~~~ 575 (889)
+...|++++|.+.+
T Consensus 94 y~~~g~~~~A~~~l 107 (112)
T d1hxia_ 94 HTNEHNANAALASL 107 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHH
T ss_conf 99978999999999
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=9.1e-10 Score=76.01 Aligned_cols=78 Identities=12% Similarity=0.072 Sum_probs=27.6
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 9998438987589999889999809---9889999999999809991--9999998899995587999999999998018
Q 002716 594 YQMLESDAPKGVLYFRQSLLLLRLN---CPEAAMRSLQLARQHAASD--HERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (889)
Q Consensus 594 ~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~l~~al~~~p~~--~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 668 (889)
++++..+|.++.+++++|.++...+ ++++|+..|++++..+|.. .++++++|.+|...|++++|+..|+++++++
T Consensus 23 ~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~ 102 (122)
T d1nzna_ 23 QSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 102 (122)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99883299989999999999998512678999999999998606993199999999999999731699999999999769
Q ss_pred CCH
Q ss_conf 884
Q 002716 669 RSF 671 (889)
Q Consensus 669 p~~ 671 (889)
|++
T Consensus 103 P~~ 105 (122)
T d1nzna_ 103 PQN 105 (122)
T ss_dssp TTC
T ss_pred CCC
T ss_conf 098
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.91 E-value=2.6e-08 Score=66.56 Aligned_cols=73 Identities=10% Similarity=0.064 Sum_probs=32.9
Q ss_pred HHHCCCHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9820689999999999984789-988999999999811219999999999997499970024348899999999999323
Q 002716 489 LMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDN 567 (889)
Q Consensus 489 ~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~g~ 567 (889)
.+..|++++|+..++++++.+| +...+..++.++...|++++|+..++++++++|++. .+...++.+....+.
T Consensus 6 aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~------~~~~~l~~ll~a~~~ 79 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL------PGASQLRHLVKAAQA 79 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH------HHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHCCC
T ss_conf 98888999999999999997899999999999999987999999999999998699738------999999999983466
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.84 E-value=1.3e-08 Score=68.57 Aligned_cols=21 Identities=33% Similarity=0.366 Sum_probs=7.3
Q ss_pred HHHHHHCCCHHHHHHHHHHHH
Q ss_conf 368871234999999999999
Q 002716 390 GCVRLLRKEYDEAEHLFEAAV 410 (889)
Q Consensus 390 G~~~~~~g~~~eA~~~~~~Al 410 (889)
|..++..|+|++|+..|++|+
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al 36 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAM 36 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
T ss_conf 999998599999999999999
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.84 E-value=1.5e-08 Score=68.16 Aligned_cols=121 Identities=9% Similarity=-0.075 Sum_probs=56.1
Q ss_pred HHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCCCCCC
Q ss_conf 99980998899999999998099919999998899995587999999999998018884-99999999999747998760
Q 002716 613 LLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCS 691 (889)
Q Consensus 613 ~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~~~~~~~~ 691 (889)
-.+..|++++|+..++++++.+|.+...+..+|.++...|++++|+..++++++++|++ ..+..++.++...+
T Consensus 5 ~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~------ 78 (264)
T d1zbpa1 5 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQ------ 78 (264)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH------
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC------
T ss_conf 99888899999999999999789999999999999998799999999999999869973899999999998346------
Q ss_pred HHHHHHHHHHHCCHHHH-----CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC
Q ss_conf 24666599983013310-----752599999899999739968999999998733853
Q 002716 692 STVVSLLEDALKCPSDR-----LRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT 744 (889)
Q Consensus 692 ~~~~~~~~~Al~~~~~~-----~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~ 744 (889)
..+++....... ......+...+..+...|++++|...++++.+..|.
T Consensus 79 -----~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~ 131 (264)
T d1zbpa1 79 -----ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 131 (264)
T ss_dssp -----HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred -----CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
T ss_conf -----63789987544420358647999999999999679989999999999833999
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.71 E-value=5.4e-07 Score=58.05 Aligned_cols=119 Identities=10% Similarity=0.028 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCC
Q ss_conf 99999999813688712349999999999998086025766889986508807899998512311485204889975108
Q 002716 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYC 459 (889)
Q Consensus 380 ~~~~~a~~~lG~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~~ 459 (889)
..+..++...|......|++++|+..|.+|+.........+ .....|+...+...
T Consensus 8 ~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~------------------------~~~~~w~~~~r~~l- 62 (179)
T d2ff4a2 8 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDD------------------------LRDFQFVEPFATAL- 62 (179)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG------------------------GTTSTTHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCC------------------------CCCHHHHHHHHHHH-
T ss_conf 99999999999999988799999999999986386131125------------------------76318999999999-
Q ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 703899999885603998804489999999820689999999999984789-9889999999998112199999999999
Q 002716 460 EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAI 538 (889)
Q Consensus 460 ~~~~A~~~l~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~a 538 (889)
.+....++..++..+...|++++|+..+++++..+| +...+..++.++...|++.+|+..|+++
T Consensus 63 ---------------~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 63 ---------------VEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf ---------------99999999999999988799057899999999849851999999999999855799999999999
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.63 E-value=2.4e-07 Score=60.40 Aligned_cols=117 Identities=9% Similarity=-0.137 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 89999999998112199999999999974999700243488999999999993235479899976321155554031899
Q 002716 513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 592 (889)
Q Consensus 513 ~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~l~~~~~~~dd~~sl~~ 592 (889)
..+...|......|++++|+..|.+++.+.++....... .+.|-.
T Consensus 12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~-------------~~~w~~---------------------- 56 (179)
T d2ff4a2 12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR-------------DFQFVE---------------------- 56 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT-------------TSTTHH----------------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCC-------------CHHHHH----------------------
T ss_conf 999999999998879999999999998638613112576-------------318999----------------------
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 9999843898758999988999980998899999999998099919999998899995587999999999998
Q 002716 593 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI 665 (889)
Q Consensus 593 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al 665 (889)
.......+....++..++.++...|++++|+..+++++..+|.+..++..++.++...|++.+|+..|+++.
T Consensus 57 -~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~ 128 (179)
T d2ff4a2 57 -PFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 128 (179)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf -999999999999999999999887990578999999998498519999999999998557999999999999
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=2.8e-07 Score=59.89 Aligned_cols=13 Identities=23% Similarity=0.307 Sum_probs=3.9
Q ss_pred HHHHCCCHHHHHH
Q ss_conf 8871234999999
Q 002716 392 VRLLRKEYDEAEH 404 (889)
Q Consensus 392 ~~~~~g~~~eA~~ 404 (889)
+++.+|+|++|+.
T Consensus 14 ~~~~~g~y~~A~~ 26 (95)
T d1tjca_ 14 VAYTEADYYHTEL 26 (95)
T ss_dssp HHHHTTCHHHHHH
T ss_pred HHHHCCCHHHHHH
T ss_conf 9999779999999
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=4.2e-07 Score=58.75 Aligned_cols=31 Identities=13% Similarity=0.341 Sum_probs=10.1
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCH
Q ss_conf 9998899995587999999999998018884
Q 002716 641 LVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (889)
Q Consensus 641 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 671 (889)
+.++|.++...|++++|+..++++++++|++
T Consensus 49 l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~ 79 (95)
T d1tjca_ 49 LDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf 9987268886577398887887798869297
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.65 E-value=0.00023 Score=41.11 Aligned_cols=68 Identities=16% Similarity=0.075 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHCC---HHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCH
Q ss_conf 5899998899998099---889999999999809991-9999998899995587999999999998018884
Q 002716 604 GVLYFRQSLLLLRLNC---PEAAMRSLQLARQHAASD-HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (889)
Q Consensus 604 ~~~~~~la~~~~~~g~---~~~A~~~l~~al~~~p~~-~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 671 (889)
....|+.|.++....+ .+.++..++.+++.+|.. .+.++++|..++..|++++|..+++++++++|++
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n 106 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 106 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 101999999998279688999999999999854950599999999999998732999999999998239984
|
| >d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: Elongin C species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.63 E-value=0.00014 Score=42.55 Aligned_cols=80 Identities=24% Similarity=0.360 Sum_probs=64.1
Q ss_pred EEEEE-CCEEEEEHHHHHHHCCHHHHHHHCC--CCCCCCCCCEEECCCCCCHHHHHHHHHHHC-----C---CCCCC--C
Q ss_conf 79996-7928870299984149543242138--877888671471699989999999989562-----5---98889--9
Q 002716 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNG--SFMESLCEDIDLSENNISPSGLRIISDFSV-----T---GSLNG--V 250 (889)
Q Consensus 184 v~~~v-~~~~~~~hr~iLaa~s~~f~~mf~~--~~~e~~~~~i~l~~~~~~~~~~~~~l~~~Y-----t---~~l~~--~ 250 (889)
|+++- +|..|.+.+.+ |..|+.++.||.+ ++.|+....|.|+ +|+...|+.+++|++ + +.++. +
T Consensus 3 i~L~SsDg~~f~V~~~~-A~~S~tI~~ml~~~~~~~e~~~~~IpL~--nV~s~iL~kViey~~~h~~~~~~~~~~~~fdi 79 (96)
T d2c9wc1 3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFR--EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPI 79 (96)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHC------------CEEECT--TCCHHHHHHHHHHHHHHHHTC----CCCCCCC
T ss_pred EEEECCCCCEEEEEHHH-HHHHHHHHHHHHCCCCCCCCCCCEEECC--CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 99991899999962999-9886799999836676666777736889--88789999999998762127688578998768
Q ss_pred CHHHHHHHHHHHHHHC
Q ss_conf 9888999999998990
Q 002716 251 TPNLLLEILIFANKFC 266 (889)
Q Consensus 251 ~~~~~~~ll~~A~~~~ 266 (889)
+++.+.+|+.|||++.
T Consensus 80 ~~~~l~eLi~AAnyLd 95 (96)
T d2c9wc1 80 APEIALELLMAANFLD 95 (96)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHC
T ss_conf 9889999999986646
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.61 E-value=0.0014 Score=36.09 Aligned_cols=21 Identities=14% Similarity=0.354 Sum_probs=9.0
Q ss_pred CCHHHHHHHHHHHHHCCCCHH
Q ss_conf 349999999999998086025
Q 002716 397 KEYDEAEHLFEAAVNAGHIYS 417 (889)
Q Consensus 397 g~~~eA~~~~~~Al~~~~~~~ 417 (889)
+|+++|+.+|+++.+.++..+
T Consensus 7 kd~~~A~~~~~kaa~~g~~~a 27 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELNEMFG 27 (133)
T ss_dssp HHHHHHHHHHHHHHHTTCTTH
T ss_pred CCHHHHHHHHHHHHHCCCHHH
T ss_conf 699999999999998799154
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.60 E-value=0.00051 Score=38.81 Aligned_cols=77 Identities=16% Similarity=0.133 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHC---CCHHHHHHHHHHHHCCCC-C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 4489999999820---689999999999984789-9-8899999999981121999999999999749997002434889
Q 002716 480 YPYMYRASSLMTK---QNVEAALAEINRILGFKL-A-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAA 554 (889)
Q Consensus 480 ~a~~~la~~~~~~---g~~~~Al~~l~kal~~~p-~-~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a 554 (889)
.+.+..|.++... .+.++|+..++.++..+| . .++++.+|..|+.+|+|++|...++++|+++|++. .+
T Consensus 36 qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~------qA 109 (124)
T d2pqrb1 36 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK------QV 109 (124)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH------HH
T ss_pred CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH------HH
T ss_conf 019999999982796889999999999998549505999999999999987329999999999982399849------99
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q 002716 555 SQLHMLVR 562 (889)
Q Consensus 555 ~~~lg~~~ 562 (889)
..+...+.
T Consensus 110 ~~L~~~Ie 117 (124)
T d2pqrb1 110 GALKSMVE 117 (124)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999999
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.51 E-value=0.0018 Score=35.21 Aligned_cols=12 Identities=17% Similarity=-0.072 Sum_probs=3.9
Q ss_pred HHHHHHHHHHHH
Q ss_conf 889999999999
Q 002716 620 PEAAMRSLQLAR 631 (889)
Q Consensus 620 ~~~A~~~l~~al 631 (889)
+++|+.+|+++.
T Consensus 75 ~~~A~~~~~~aa 86 (133)
T d1klxa_ 75 LRKAAQYYSKAC 86 (133)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 578888875000
|
| >d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: Elongin C species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.13 E-value=0.0026 Score=34.27 Aligned_cols=78 Identities=23% Similarity=0.372 Sum_probs=63.5
Q ss_pred EEEEE-CCEEEEEHHHHHHHCCHHHHHHHCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHCC-----------C---CCC
Q ss_conf 79996-79288702999841495432421388778886714716999899999999895625-----------9---888
Q 002716 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVT-----------G---SLN 248 (889)
Q Consensus 184 v~~~v-~~~~~~~hr~iLaa~s~~f~~mf~~~~~e~~~~~i~l~~~~~~~~~~~~~l~~~Yt-----------~---~l~ 248 (889)
|+++- +|..|.+.+.+ |..|..++.||.+++.|+. ..|.++ +|+..+|+.+++|++- + +.+
T Consensus 6 v~L~SsDg~~f~V~~~~-A~~S~tI~~ml~~~~~e~~-~~Ipl~--~V~s~iL~kViey~~~h~~~~~~~~~~~~~~efd 81 (99)
T d1hv2a_ 6 VTLVSKDDKEYEISRSA-AMISPTLKAMIEGPFRESK-GRIELK--QFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEFE 81 (99)
T ss_dssp EEEEETTTEEEEEEHHH-HTTCHHHHHHHHSSTTTCT-TEEEET--TSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCCC
T ss_pred EEEECCCCCEEEEEHHH-HHHHHHHHHHHHCCCCCCC-CCCCCC--CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 99990899989952999-9986999999973587776-741058--8976999999999987622768643426687777
Q ss_pred CCCHHHHHHHHHHHHHHC
Q ss_conf 999888999999998990
Q 002716 249 GVTPNLLLEILIFANKFC 266 (889)
Q Consensus 249 ~~~~~~~~~ll~~A~~~~ 266 (889)
++.+.+.+|+.||+++.
T Consensus 82 -vd~~~l~eLi~AAnyLd 98 (99)
T d1hv2a_ 82 -IPTEMSLELLLAADYLS 98 (99)
T ss_dssp -CCHHHHHHHHHHHHHHC
T ss_pred -CCHHHHHHHHHHHHHHC
T ss_conf -89899999999974618
|
| >d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: Tetramerization domain of potassium channels domain: Potassium channel kv4.2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.73 E-value=0.0028 Score=34.03 Aligned_cols=81 Identities=12% Similarity=0.102 Sum_probs=60.5
Q ss_pred EEEEECCEEEEEHHHHHHHCCH-HHHHHHCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCHH-HHHHHHHH
Q ss_conf 7999679288702999841495-432421388778886714716999899999999895625988899988-89999999
Q 002716 184 VVFRIHEEKIECDRQKFAALSA-PFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN-LLLEILIF 261 (889)
Q Consensus 184 v~~~v~~~~~~~hr~iLaa~s~-~f~~mf~~~~~e~~~~~i~l~~~~~~~~~~~~~l~~~Yt~~l~~~~~~-~~~~ll~~ 261 (889)
|++.|||..|...+..|..... .+..|+...+..+...++-+. =+|..|+.+|+|+.+|.+. ++++ ....++.-
T Consensus 2 I~LNVGG~~f~t~~~TL~~~p~s~l~~~~~~~~~~~~~~~~FiD---Rdp~~F~~IL~ylR~G~l~-~p~~~~~~~l~~E 77 (105)
T d1nn7a_ 2 IVLNVSGTRFQTWQDTLERYPDTLLGSSERDFFYHPETQQYFFD---RDPDIFRHILNFYRTGKLH-YPRHECISAYDEE 77 (105)
T ss_dssp EEEEETTEEEEECHHHHHTSCSSSTTSGGGGGGEEGGGTEEEEC---SCTTTHHHHHHHHHHSCBC-CCTTSCHHHHHHH
T ss_pred EEEEECCEEEEEEHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEE---CCHHHHHHHHHHHHCCCCC-CCCCCCHHHHHHH
T ss_conf 89998999999708998239997761224666757888968983---7989999999998169325-4877549999999
Q ss_pred HHHHCHH
Q ss_conf 9899099
Q 002716 262 ANKFCCE 268 (889)
Q Consensus 262 A~~~~~~ 268 (889)
|+.|.++
T Consensus 78 a~fygi~ 84 (105)
T d1nn7a_ 78 LAFFGLI 84 (105)
T ss_dssp HHHHTCC
T ss_pred HHHCCCC
T ss_conf 9976998
|
| >d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: Tetramerization domain of potassium channels domain: akv3.1 voltage-gated potassium channel species: California sea hare (Aplysia californica) [TaxId: 6500]
Probab=96.51 E-value=0.003 Score=33.81 Aligned_cols=82 Identities=11% Similarity=0.113 Sum_probs=60.2
Q ss_pred CEEEEECCEEEEEHHHHHHHCCH-HHHHHHCCCCCC-CCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCHH-HHHHHH
Q ss_conf 27999679288702999841495-432421388778-886714716999899999999895625988899988-899999
Q 002716 183 NVVFRIHEEKIECDRQKFAALSA-PFSAMLNGSFME-SLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN-LLLEIL 259 (889)
Q Consensus 183 Dv~~~v~~~~~~~hr~iLaa~s~-~f~~mf~~~~~e-~~~~~i~l~~~~~~~~~~~~~l~~~Yt~~l~~~~~~-~~~~ll 259 (889)
-|+|.|||+.|...+..|..... +|..|+.+.... +....+-|. -+|..|+.+|+|+.+|.+. ++++ .+..++
T Consensus 3 rI~LNVGG~~F~t~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~fiD---Rdp~~F~~IL~ylR~g~l~-~p~~~~~~~l~ 78 (103)
T d3kvta_ 3 RVIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFFD---RHPGVFAQIINYYRSGKLH-YPTDVCGPLFE 78 (103)
T ss_dssp EEEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEEC---SCTTTHHHHHHHHHHSCBC-CCSSSCHHHHH
T ss_pred EEEEEECCEEEEEEHHHHHHCCCCHHHHHHCCCCCCCCCCCCEEEC---CCHHHHHHHHHHHCCCCCC-CCCCCCHHHHH
T ss_conf 8999989988997089983196522689975897667878968963---8989999999998359723-26664799999
Q ss_pred HHHHHHCHH
Q ss_conf 999899099
Q 002716 260 IFANKFCCE 268 (889)
Q Consensus 260 ~~A~~~~~~ 268 (889)
.-|+.|.++
T Consensus 79 ~Ea~yygi~ 87 (103)
T d3kvta_ 79 EELEFWGLD 87 (103)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHCCCC
T ss_conf 999985999
|
| >d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: Tetramerization domain of potassium channels domain: Shaker potassium channel species: California sea hare (Aplysia californica) [TaxId: 6500]
Probab=96.21 E-value=0.0058 Score=32.01 Aligned_cols=80 Identities=11% Similarity=0.051 Sum_probs=58.5
Q ss_pred EEEEECCEEEEEHHHHHHHC-CHHHHHHHCCCCC-CCCCCCEEECCCCCCHHHHHHHHHHHCCC-CCCCCCH-HHHHHHH
Q ss_conf 79996792887029998414-9543242138877-88867147169998999999998956259-8889998-8899999
Q 002716 184 VVFRIHEEKIECDRQKFAAL-SAPFSAMLNGSFM-ESLCEDIDLSENNISPSGLRIISDFSVTG-SLNGVTP-NLLLEIL 259 (889)
Q Consensus 184 v~~~v~~~~~~~hr~iLaa~-s~~f~~mf~~~~~-e~~~~~i~l~~~~~~~~~~~~~l~~~Yt~-~l~~~~~-~~~~~ll 259 (889)
|++.|||+.|...+..|... +..|..|+..+.. .+...++-+. -+|..|+.+|+|+.|| .+. .+. ..+..++
T Consensus 3 I~LNVGG~~f~t~~~tL~~~p~s~l~~l~~~~~~~~~~~g~~FiD---Rdp~~F~~IL~flR~~~~l~-~~~~~~~~~l~ 78 (100)
T d1t1da_ 3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFD---RNRPSFDAILYFYQSGGRLR-RPVNVPLDVFS 78 (100)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEEC---SCSTTHHHHHHHHHTTSCCC-CCTTSCHHHHH
T ss_pred EEEEECCEEEEEEHHHHHHCCCCHHHHHHHCCCCCCCCCCEEEEE---CCHHHHHHHHHHHHCCCCCC-CCCCCCHHHHH
T ss_conf 899979989997289982098756677772777677888808993---69789999999996489757-99862299999
Q ss_pred HHHHHHCH
Q ss_conf 99989909
Q 002716 260 IFANKFCC 267 (889)
Q Consensus 260 ~~A~~~~~ 267 (889)
.-|+.|.+
T Consensus 79 ~Ea~y~gi 86 (100)
T d1t1da_ 79 EEIKFYEL 86 (100)
T ss_dssp HHHHHTTC
T ss_pred HHHHHCCC
T ss_conf 99998699
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.72 E-value=0.072 Score=24.91 Aligned_cols=144 Identities=11% Similarity=-0.073 Sum_probs=88.4
Q ss_pred HHHHCCCHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 999739968999999998733853--599989999998189999999999999983169999999981399789999998
Q 002716 721 VYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLE 798 (889)
Q Consensus 721 ~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~ 798 (889)
.....+++..+...+...-..... ...+.+|+.+...|+.++|...+..+.. .+ .-+-.......|..-.. . .
T Consensus 294 ~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~-~~-~fYG~LAa~~Lg~~~~~-~--~ 368 (450)
T d1qsaa1 294 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ-QR-GFYPMVAAQRIGEEYEL-K--I 368 (450)
T ss_dssp HHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-SC-SHHHHHHHHHTTCCCCC-C--C
T ss_pred HHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC-CC-CHHHHHHHHHCCCCCCC-C--C
T ss_conf 998829869999999865846242899999999999983981568999999845-78-73999999982999899-8--6
Q ss_pred HHHHCCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
Q ss_conf 988349999---189999999999679989999999999843799999999999999809999999999998814
Q 002716 799 MVTQLDPLR---VYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSV 870 (889)
Q Consensus 799 ~al~l~p~~---~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~l~l~a~~~~~~g~~~~A~~~~~~al~l 870 (889)
..+...+.. ...-..++..+...|+...|...+..++... +.......+.+....|.++.|+....++-..
T Consensus 369 ~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~-~~~~~~~la~lA~~~g~~~~aI~a~~~~~~~ 442 (450)
T d1qsaa1 369 DKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK-SKTEQAQLARYAFNNQWWDLSVQATIAGKLW 442 (450)
T ss_dssp CCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTTCHHHHHHHHHHTTCT
T ss_pred CCCCCCHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
T ss_conf 7799567776313859899999998699469999999998679-9999999999999879846999999998733
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.30 E-value=0.09 Score=24.30 Aligned_cols=36 Identities=11% Similarity=0.165 Sum_probs=12.9
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCH
Q ss_conf 399689999999987338535999899999981899
Q 002716 725 CGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNK 760 (889)
Q Consensus 725 ~g~~~~A~~~~~~al~~~p~~a~~~La~~~~~~g~~ 760 (889)
.++......+++.....+.......++.+|...+++
T Consensus 261 ~~~l~li~p~Le~v~~~n~~~vn~al~~lyie~~d~ 296 (336)
T d1b89a_ 261 VKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDY 296 (336)
T ss_dssp TTCTTTTHHHHHHHHTTCCHHHHHHHHHHHHHTTCH
T ss_pred CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHH
T ss_conf 388077999999999818099999999998671246
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=93.85 E-value=0.11 Score=23.73 Aligned_cols=53 Identities=13% Similarity=0.029 Sum_probs=25.5
Q ss_pred HHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99809988999999999980999199999988999955879999999999980
Q 002716 614 LLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (889)
Q Consensus 614 ~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 666 (889)
....+++..+...++.............+.+|..+...|+.++|...|..+..
T Consensus 295 al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 295 ALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf 98829869999999865846242899999999999983981568999999845
|
| >d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.72 E-value=0.89 Score=17.86 Aligned_cols=59 Identities=20% Similarity=0.181 Sum_probs=46.1
Q ss_pred CEEEEE-CCEEEEEHHHHHHHCCHHHHHHHCCCCCCC----CCCCEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 279996-792887029998414954324213887788----86714716999899999999895625
Q 002716 183 NVVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMES----LCEDIDLSENNISPSGLRIISDFSVT 244 (889)
Q Consensus 183 Dv~~~v-~~~~~~~hr~iLaa~s~~f~~mf~~~~~e~----~~~~i~l~~~~~~~~~~~~~l~~~Yt 244 (889)
-|+|+- +|.+|.+.+.+ |..|...+.|+...-.++ ....|.|+ +|+..+|+.+++|++-
T Consensus 2 ~I~L~SsDg~~F~v~~~~-a~~S~tIk~ml~~~~~~~~~~~~~~~Ipl~--~V~s~iL~kVieyc~~ 65 (72)
T d1nexa2 2 NVVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPVP--NVRSSVLQKVIEWAEH 65 (72)
T ss_dssp EEEEECTTSCEEEEEHHH-HTTSHHHHHTC-------------CEEECT--TCCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCEEEECHHH-HHHHHHHHHHHHHCCCCCCCCCCCCCCCCC--CCCHHHHHHHHHHHHH
T ss_conf 069993799989951999-999899999998348664334777832079--8698999999999997
|
| >d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: Cyclin A/CDK2-associated p45, Skp1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.26 E-value=0.92 Score=17.77 Aligned_cols=54 Identities=19% Similarity=0.251 Sum_probs=43.4
Q ss_pred EEEEE-CCEEEEEHHHHHHHCCHHHHHHHCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 79996-79288702999841495432421388778886714716999899999999895625
Q 002716 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVT 244 (889)
Q Consensus 184 v~~~v-~~~~~~~hr~iLaa~s~~f~~mf~~~~~e~~~~~i~l~~~~~~~~~~~~~l~~~Yt 244 (889)
|+|+- +|..|.+.+.+ |..|...+.|+.+.- ...|.++ +|+..+|+.+++|++-
T Consensus 3 I~L~SsDg~~f~v~~~~-a~~S~tI~~ml~~~~----~~~Ipl~--~V~s~iL~kVieyc~~ 57 (61)
T d1fs1b2 3 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLG----MDPVPLP--NVNAAILKKVIQWCTH 57 (61)
T ss_dssp EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHTC----CSSEECT--TCCHHHHHHHHHHHHH
T ss_pred EEEEECCCCEEEECHHH-HHHHHHHHHHHHCCC----CCCCCCC--CCCHHHHHHHHHHHHH
T ss_conf 89992699989963999-988389999986589----9973069--7698999999999987
|