Citrus Sinensis ID: 002722
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 888 | 2.2.26 [Sep-21-2011] | |||||||
| O24617 | 937 | DNA mismatch repair prote | yes | no | 0.969 | 0.918 | 0.799 | 0.0 | |
| Q9XGC9 | 942 | DNA mismatch repair prote | N/A | no | 0.978 | 0.922 | 0.720 | 0.0 | |
| Q5XXB5 | 933 | DNA mismatch repair prote | N/A | no | 0.931 | 0.886 | 0.447 | 0.0 | |
| Q3MHE4 | 934 | DNA mismatch repair prote | yes | no | 0.935 | 0.889 | 0.449 | 0.0 | |
| P43246 | 934 | DNA mismatch repair prote | yes | no | 0.931 | 0.885 | 0.444 | 0.0 | |
| P43247 | 935 | DNA mismatch repair prote | yes | no | 0.935 | 0.888 | 0.442 | 0.0 | |
| P54275 | 933 | DNA mismatch repair prote | yes | no | 0.931 | 0.886 | 0.433 | 0.0 | |
| O13396 | 937 | DNA mismatch repair prote | N/A | no | 0.927 | 0.879 | 0.432 | 0.0 | |
| Q553L4 | 937 | DNA mismatch repair prote | yes | no | 0.935 | 0.886 | 0.390 | 1e-175 | |
| P25847 | 964 | DNA mismatch repair prote | yes | no | 0.925 | 0.852 | 0.389 | 1e-169 |
| >sp|O24617|MSH2_ARATH DNA mismatch repair protein MSH2 OS=Arabidopsis thaliana GN=MSH2 PE=1 SV=1 | Back alignment and function desciption |
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Score = 1463 bits (3787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 690/863 (79%), Positives = 789/863 (91%), Gaps = 2/863 (0%)
Query: 3 DEQNKLPELKLDAKQARGFLSFYKTLPNDTRAVRFFDRRDYYTAHGENATFIAKTYYHTT 62
+EQNKLPELKLDAKQA+GFLSFYKTLPNDTRAVRFFDR+DYYTAHGEN+ FIAKTYYHTT
Sbjct: 6 EEQNKLPELKLDAKQAQGFLSFYKTLPNDTRAVRFFDRKDYYTAHGENSVFIAKTYYHTT 65
Query: 63 TALRQLGTGSDALSSVSVSKNMFETIARDLLLERTDHTLELYEGSGSNWRLVKSGTPGNL 122
TALRQLG+GS+ALSSVS+S+NMFETIARDLLLER DHT+ELYEGSGSNWRLVK+G+PGN+
Sbjct: 66 TALRQLGSGSNALSSVSISRNMFETIARDLLLERNDHTVELYEGSGSNWRLVKTGSPGNI 125
Query: 123 GSYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNVE 182
GS+EDVLFANNEMQDTPV+V++FP+F + C IG+ YVDLT+RVLGLAEFLDDS FTN+E
Sbjct: 126 GSFEDVLFANNEMQDTPVVVSIFPSFHDGRCVIGMAYVDLTRRVLGLAEFLDDSRFTNLE 185
Query: 183 SALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVRG 242
S+L+ALG KEC+ P E+ KS+ECK+L D+L RC VM+TERKK EFK RDL DL RLV+G
Sbjct: 186 SSLIALGAKECIFPAESGKSNECKSLYDSLERCAVMITERKKHEFKGRDLDSDLKRLVKG 245
Query: 243 SVEPVRDLVSGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAAMRALN 302
++EPVRDLVSGF++A ALGALLS++ELLS+E NYGN+ IR+Y + +MRLDSAAMRALN
Sbjct: 246 NIEPVRDLVSGFDLATPALGALLSFSELLSNEDNYGNFTIRRYDIGGFMRLDSAAMRALN 305
Query: 303 VLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTA 362
V+ESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPL+D+NEI RLDIVQ FV++
Sbjct: 306 VMESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLVDLNEIKTRLDIVQCFVEEAG 365
Query: 363 LRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLI 422
LRQDLRQHLKRISD+ERL+ +LE+RR GLQ I+KLYQS+IRLP+I++A+QQY G+F+SLI
Sbjct: 366 LRQDLRQHLKRISDVERLLRSLERRRGGLQHIIKLYQSTIRLPFIKTAMQQYTGEFASLI 425
Query: 423 KERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALKNEQESLER 482
ERYL LE+L+D DHL KFI LVE SVDLDQLENGEYMISSSYDT L++LK+++E LE+
Sbjct: 426 SERYLKKLEALSDQDHLGKFIDLVECSVDLDQLENGEYMISSSYDTKLASLKDQKELLEQ 485
Query: 483 QIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDG 542
QIH LHK+TA +LDL VDKALKLDK QFGHVFRITKKEEPKIRKKLTTQFIVLETRKDG
Sbjct: 486 QIHELHKKTAIELDLQVDKALKLDKAAQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDG 545
Query: 543 VKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSF 602
VKFTNTKLKKLGDQYQ V+++Y++CQKELV+RV++T +FSE+F+ LA +LSE+DVLLSF
Sbjct: 546 VKFTNTKLKKLGDQYQSVVDDYRSCQKELVDRVVETVTSFSEVFEDLAGLLSEMDVLLSF 605
Query: 603 ADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIIT 662
ADLA+SCPTPY RP+I D GDI+LEGSRHPCVEAQDWVNFIPNDC+L+RGKSWFQI+T
Sbjct: 606 ADLAASCPTPYCRPEITSSDAGDIVLEGSRHPCVEAQDWVNFIPNDCRLMRGKSWFQIVT 665
Query: 663 GPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQE 722
GPNMGGKSTFIRQVGV +LMAQVGSFVPCD+ASIS+RDCIFARVGAGDCQLRGVSTFMQE
Sbjct: 666 GPNMGGKSTFIRQVGVIVLMAQVGSFVPCDKASISIRDCIFARVGAGDCQLRGVSTFMQE 725
Query: 723 MLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT 782
MLETASILKGA+D+SLIIIDELGRGTSTYDGFGLAWAICEHLV+ RAPTLFATHFHELT
Sbjct: 726 MLETASILKGASDKSLIIIDELGRGTSTYDGFGLAWAICEHLVQVKRAPTLFATHFHELT 785
Query: 783 ALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFP 842
ALA AN + VGVAN+HVSAHID+ SRKLTMLYKVEPGACDQSFGIHVAEFANFP
Sbjct: 786 ALAQ--ANSEVSGNTVGVANFHVSAHIDTESRKLTMLYKVEPGACDQSFGIHVAEFANFP 843
Query: 843 ESVVTLAREKAAELEDFTPSAVI 865
ESVV LAREKAAELEDF+PS++I
Sbjct: 844 ESVVALAREKAAELEDFSPSSMI 866
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Involved in postreplication mismatch repair. Binds specifically to DNA containing mismatched nucleotides thus providing a target for the excision repair processes characteristic of postreplication mismatch repair. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9XGC9|MSH2_MAIZE DNA mismatch repair protein MSH2 OS=Zea mays GN=MUS1 PE=3 SV=1 | Back alignment and function description |
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Score = 1320 bits (3415), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 627/870 (72%), Positives = 729/870 (83%), Gaps = 1/870 (0%)
Query: 4 EQNKLPELKLDAKQARGFLSFYKTLPNDTRAVRFFDRRDYYTAHGENATFIAKTYYHTTT 63
E KLPE KLDA+QA+GF+SF+K LP D RAVR FDRRDYYTAHGENATFIA+TYYHT +
Sbjct: 9 EGGKLPEFKLDARQAQGFISFFKKLPQDPRAVRLFDRRDYYTAHGENATFIARTYYHTMS 68
Query: 64 ALRQLGTGSDALSSVSVSKNMFETIARDLLLERTDHTLELYEGSGSNWRLVKSGTPGNLG 123
ALRQLG+ SD + S SVSK MFETIAR++LLERTD TLELYEGSGSNWRL KSGTPGN+G
Sbjct: 69 ALRQLGSSSDGILSASVSKAMFETIARNILLERTDCTLELYEGSGSNWRLTKSGTPGNIG 128
Query: 124 SYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNVES 183
S+ED+LFANN+M+D+PVIVALFP RE+ +GL ++D+T R LGLAEF +DS FTNVES
Sbjct: 129 SFEDILFANNDMEDSPVIVALFPACRESQLYVGLSFLDMTNRKLGLAEFPEDSRFTNVES 188
Query: 184 ALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVRGS 243
ALVALGCKECLLP + KS + L+D ++ C V+LTE+KK +FK+RDL QDL R++RGS
Sbjct: 189 ALVALGCKECLLPADCEKSIDLNPLQDVISNCNVLLTEKKKADFKSRDLAQDLGRIIRGS 248
Query: 244 VEPVRDLVSGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAAMRALNV 303
VEPVRDL+S F+ A G LGALLSYAELL+D++NYGNY I KY+L+ YMRLDSAA+RALN+
Sbjct: 249 VEPVRDLLSQFDYALGPLGALLSYAELLADDTNYGNYTIEKYNLNCYMRLDSAAVRALNI 308
Query: 304 LESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTAL 363
E KTD NKNFSLFGLMNRTCT GMGKRLL+ WLKQPLLDVNEIN RLD+VQAFV+D L
Sbjct: 309 AEGKTDVNKNFSLFGLMNRTCTVGMGKRLLNRWLKQPLLDVNEINNRLDMVQAFVEDPEL 368
Query: 364 RQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLIK 423
RQ LRQ LKRISDI+RL H+L K+ A LQ +VKLYQS R+PYI+ LQQY GQFS+LI+
Sbjct: 369 RQGLRQQLKRISDIDRLTHSLRKKSANLQPVVKLYQSCSRIPYIKGILQQYNGQFSTLIR 428
Query: 424 ERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALKNEQESLERQ 483
++L+PLE + +F +LVET++DL QLENGEY IS Y + L LK+E +E
Sbjct: 429 SKFLEPLEEWMAKNRFGRFSSLVETAIDLAQLENGEYRISPLYSSDLGVLKDELSVVENH 488
Query: 484 IHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGV 543
I++LH TASDLDL VDK LKL+KG+ GHVFR++KKEE K+RKKLT ++++ETRKDGV
Sbjct: 489 INNLHVDTASDLDLSVDKQLKLEKGS-LGHVFRMSKKEEQKVRKKLTGSYLIIETRKDGV 547
Query: 544 KFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFA 603
KFTN+KLK L DQYQ + EY +CQK++V V++ + TFSE+F++ A +LSELDVL SFA
Sbjct: 548 KFTNSKLKNLSDQYQALFGEYTSCQKKVVGDVVRVSGTFSEVFENFAAVLSELDVLQSFA 607
Query: 604 DLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITG 663
DLA+SCP PY RPDI D GDI+L GSRHPC+EAQD VNFIPNDC L+RGKSWFQIITG
Sbjct: 608 DLATSCPVPYVRPDITASDEGDIVLLGSRHPCLEAQDGVNFIPNDCTLVRGKSWFQIITG 667
Query: 664 PNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEM 723
PNMGGKSTFIRQVGVN+LMAQVGSFVPCD+ASISVRDCIFARVGAGDCQL GVSTFMQEM
Sbjct: 668 PNMGGKSTFIRQVGVNVLMAQVGSFVPCDQASISVRDCIFARVGAGDCQLHGVSTFMQEM 727
Query: 724 LETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTA 783
LETASILKGA+D+SLIIIDELGRGTSTYDGFGLAWAICEHL+E RAPTLFATHFHELTA
Sbjct: 728 LETASILKGASDKSLIIIDELGRGTSTYDGFGLAWAICEHLMEVTRAPTLFATHFHELTA 787
Query: 784 LAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPE 843
LAH N +E +GVANYHV AHID SRKLTMLYKVEPGACDQSFGIHVAEFANFPE
Sbjct: 788 LAHRNDDEHQHISDIGVANYHVGAHIDPLSRKLTMLYKVEPGACDQSFGIHVAEFANFPE 847
Query: 844 SVVTLAREKAAELEDFTPSAVISDDAKIEV 873
+VV LA+ KAAELEDF+ + SDD K EV
Sbjct: 848 AVVALAKSKAAELEDFSTTPTFSDDLKDEV 877
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Involved in postreplication mismatch repair. Binds specifically to DNA containing mismatched nucleotides thus providing a target for the excision repair processes characteristic of postreplication mismatch repair. Zea mays (taxid: 4577) |
| >sp|Q5XXB5|MSH2_CHLAE DNA mismatch repair protein Msh2 OS=Chlorocebus aethiops GN=MSH2 PE=2 SV=1 | Back alignment and function description |
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Score = 731 bits (1887), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/868 (44%), Positives = 556/868 (64%), Gaps = 41/868 (4%)
Query: 11 LKLDAKQARGFLSFYKTLPND-TRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLG 69
L+L++ GF+ F++++P T VR FDR D+YTAHGE+A A+ + T ++ +G
Sbjct: 9 LQLESAAEVGFVRFFQSMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMG 68
Query: 70 -TGSDALSSVSVSKNMFETIARDLLLERTDHTLELYEGSGSN-------WRLVKSGTPGN 121
G+ L SV +SK FE+ +DLLL R + +E+Y+ N W L +PGN
Sbjct: 69 PAGAKNLQSVVLSKMNFESFVKDLLLVR-QYRVEVYKNRAGNKASKENDWYLAYKASPGN 127
Query: 122 LGSYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNV 181
L +ED+LF NN+M + +V + + + +G+GYVD T+R LGL EF D+ F+N+
Sbjct: 128 LSQFEDILFGNNDMSASIGVVGVKMSTVDGQRQVGVGYVDSTQRKLGLCEFPDNDQFSNL 187
Query: 182 ESALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVR 241
E+ L+ +G KEC+LP + + LR + R G+++TERKK +F T+D+ QDL+RL++
Sbjct: 188 EALLIQIGPKECVLPG-GETAGDMGKLRQIIQRGGILITERKKADFSTKDIYQDLNRLLK 246
Query: 242 G--------SVEPVRDLVSGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRL 293
G +V P + ++A +L A++ + ELLSD+SN+G + + + YM+L
Sbjct: 247 GKKGEQMNSAVLPEME----NQVAVSSLSAVIKFLELLSDDSNFGQFELTTFDFSQYMKL 302
Query: 294 DSAAMRALNVLE-SKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLD 352
D AA+RALN+ + S D + SL L+N+ C G+RL++ W+KQPL+D N I RL+
Sbjct: 303 DIAAVRALNLFQGSVEDTTGSQSLAALLNK-CKTPQGQRLVNQWIKQPLMDKNRIEERLN 361
Query: 353 IVQAFVDDTALRQDLRQHL-KRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSAL 411
+V+AFV+D LRQ L++ L +R D+ RL +++ A LQ +LYQ +LP + AL
Sbjct: 362 LVEAFVEDAELRQTLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGINQLPNVIQAL 421
Query: 412 QQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLS 471
+++EG+ L+ ++ PL L D +KF ++ET++D+DQ+EN E+++ S+D LS
Sbjct: 422 EKHEGKHQKLLLAVFVTPLTDLRSD--FSKFQEMIETTLDMDQVENHEFLVKPSFDPNLS 479
Query: 472 ALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTT 531
L+ LE+++ S A DL L K +KLD TQFG+ FR+T KEE +R
Sbjct: 480 ELREIMNDLEKKMQSTLISAARDLGLDPGKQIKLDSSTQFGYYFRVTCKEEKVLRN--NK 537
Query: 532 QFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLAT 591
F ++ +K+GVKFTN+KL L ++Y K EY+ Q +V ++ + + E ++L
Sbjct: 538 NFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKEIVNISSGYVEPMQTLND 597
Query: 592 MLSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKL 651
+L++LD ++SFA +++ P PY RP I G IIL+ SRH CVE QD + FIPND
Sbjct: 598 VLAQLDAVVSFAHVSNGAPVPYVRPAILEKGQGRIILKASRHACVEVQDEITFIPNDIYF 657
Query: 652 IRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDC 711
+ K F IITGPNMGGKST+IRQ GV +LMAQ+G FVPC+ A +S+ DCI ARVGAGD
Sbjct: 658 EKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDS 717
Query: 712 QLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAP 771
QL+GVSTFM EMLETASIL+ AT SLIIIDELGRGTSTYDGFGLAWAI E++ +I A
Sbjct: 718 QLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAF 777
Query: 772 TLFATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSF 831
+FATHFHELTALA+ Q+ V N HV+A +T LTMLY+V+ G CDQSF
Sbjct: 778 CMFATHFHELTALAN---------QIPTVNNLHVTAL--TTEETLTMLYQVKKGVCDQSF 826
Query: 832 GIHVAEFANFPESVVTLAREKAAELEDF 859
GIHVAE ANFP+ V+ A++KA ELE+F
Sbjct: 827 GIHVAELANFPKHVIECAKQKALELEEF 854
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Component of the post-replicative DNA mismatch repair system (MMR). Forms two different heterodimers: MutS alpha (MSH2-MSH6 heterodimer) and MutS beta (MSH2-MSH3 heterodimer) which binds to DNA mismatches thereby initiating DNA repair. When bound, heterodimers bend the DNA helix and shields approximately 20 base pairs. MutS alpha recognizes single base mismatches and dinucleotide insertion-deletion loops (IDL) in the DNA. MutS beta recognizes larger insertion-deletion loops up to 13 nucleotides long. After mismatch binding, MutS alpha or beta forms a ternary complex with the MutL alpha heterodimer, which is thought to be responsible for directing the downstream MMR events, including strand discrimination, excision, and resynthesis. ATP binding and hydrolysis play a pivotal role in mismatch repair functions. The ATPase activity associated with MutS alpha regulates binding similar to a molecular switch: mismatched DNA provokes ADP-->ATP exchange, resulting in a discernible conformational transition that converts MutS alpha into a sliding clamp capable of hydrolysis-independent diffusion along the DNA backbone. This transition is crucial for mismatch repair. MutS alpha may also play a role in DNA homologous recombination repair. In melanocytes may modulate both UV-B-induced cell cycle regulation and apoptosis. Chlorocebus aethiops (taxid: 9534) |
| >sp|Q3MHE4|MSH2_BOVIN DNA mismatch repair protein Msh2 OS=Bos taurus GN=MSH2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 729 bits (1882), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/864 (44%), Positives = 554/864 (64%), Gaps = 33/864 (3%)
Query: 11 LKLDAKQARGFLSFYKTLPND-TRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLG 69
L+LD+ GF+ F++ +P T VR FDR D+YTAH E+A A+ + T ++ +G
Sbjct: 9 LQLDSAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHREDALLAAREVFKTQGVVKYMG 68
Query: 70 -TGSDALSSVSVSKNMFETIARDLLLERTDHTLELYEGSGSN-------WRLVKSGTPGN 121
G+ L SV +SK FE+ +DLLL R + +E+Y+ N W L +PGN
Sbjct: 69 PAGAKTLESVVLSKMNFESFVKDLLLVR-QYRVEVYKNRAGNKASKENDWYLAFKASPGN 127
Query: 122 LGSYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNV 181
L +ED+LF NN+M + +V + + + +G+GYVD T+R LGL EF D+ F+N+
Sbjct: 128 LSQFEDILFGNNDMSASIGVVGVKMSTVDGQRQVGVGYVDSTQRKLGLCEFPDNDQFSNL 187
Query: 182 ESALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVR 241
E+ L+ +G KEC++P + + LR + R G+++TERK+ +F T+D+ QDL+RL++
Sbjct: 188 EALLIQIGPKECVMPG-GETAGDMGKLRQVIQRGGILITERKRADFSTKDIYQDLNRLLK 246
Query: 242 GSV-EPVRDLV---SGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAA 297
G E V V ++A +L A++ + ELLSD+SN+G + + + YM+LD AA
Sbjct: 247 GKKGEQVNSAVLPEMENQVAVSSLSAVIKFLELLSDDSNFGQFELTTFDFSQYMKLDIAA 306
Query: 298 MRALNVLE-SKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQA 356
+RALN+ + S D + + SL L+N+ C G+RL++ W+KQPL+D N I RL++V+A
Sbjct: 307 VRALNLFQGSVEDTSGSQSLAALLNK-CKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEA 365
Query: 357 FVDDTALRQDLRQHL-KRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYE 415
FV+D LRQ+L++ L +R D+ RL +++ A LQ +LYQ +LP + AL++YE
Sbjct: 366 FVEDAELRQNLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGINQLPNVIQALEKYE 425
Query: 416 GQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALKN 475
G+ +L ++ PL L D +KF ++ET++D+DQ+EN E+++ S+D LS L+
Sbjct: 426 GKHQALFLAVFVTPLIDLRSD--FSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSELRE 483
Query: 476 EQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIV 535
+ LE+++ S A DL L K +KLD TQFG+ FR+T KEE +R F
Sbjct: 484 IMDDLEKKMQSTLVSAARDLGLDPGKQIKLDSSTQFGYYFRVTCKEEKVLRN--NKNFST 541
Query: 536 LETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSE 595
++ +K+GVKFTN+KL L ++Y K EY+ Q +V ++ + + E ++L +L++
Sbjct: 542 VDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQNAIVKEIVNISSGYVEPMQTLNDVLAQ 601
Query: 596 LDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGK 655
LD ++SFA ++ + P PY RP I G I L+ SRH CVE QD V FIPND + K
Sbjct: 602 LDAVVSFAHVSDAAPVPYVRPVILEKGRGRITLKASRHACVEVQDEVAFIPNDVHFEKDK 661
Query: 656 SWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRG 715
F IITGPNMGGKST+IRQ GV +LMAQ+G FVPC+ A +S+ DCI ARVGAGD QL+G
Sbjct: 662 QMFHIITGPNMGGKSTYIRQTGVVVLMAQIGCFVPCEWAEVSIVDCILARVGAGDSQLKG 721
Query: 716 VSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFA 775
VSTFM EMLETASIL+ AT SLIIIDELGRGTSTYDGFGLAWAI E++ +I A +FA
Sbjct: 722 VSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFA 781
Query: 776 THFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHV 835
THFHELTALA+ Q+ V N HV+A +T LTMLY+V+ G CDQSFGIHV
Sbjct: 782 THFHELTALAN---------QIPTVNNLHVTAL--TTEETLTMLYQVKKGVCDQSFGIHV 830
Query: 836 AEFANFPESVVTLAREKAAELEDF 859
AE ANFP V+ A++KA ELE+F
Sbjct: 831 AELANFPRHVIECAKQKALELEEF 854
|
Component of the post-replicative DNA mismatch repair system (MMR). Forms two different heterodimers: MutS alpha (MSH2-MSH6 heterodimer) and MutS beta (MSH2-MSH3 heterodimer) which binds to DNA mismatches thereby initiating DNA repair. When bound, heterodimers bend the DNA helix and shields approximately 20 base pairs. MutS alpha recognizes single base mismatches and dinucleotide insertion-deletion loops (IDL) in the DNA. MutS beta recognizes larger insertion-deletion loops up to 13 nucleotides long. After mismatch binding, MutS alpha or beta forms a ternary complex with the MutL alpha heterodimer, which is thought to be responsible for directing the downstream MMR events, including strand discrimination, excision, and resynthesis. ATP binding and hydrolysis play a pivotal role in mismatch repair functions. The ATPase activity associated with MutS alpha regulates binding similar to a molecular switch: mismatched DNA provokes ADP-->ATP exchange, resulting in a discernible conformational transition that converts MutS alpha into a sliding clamp capable of hydrolysis-independent diffusion along the DNA backbone. This transition is crucial for mismatch repair. MutS alpha may also play a role in DNA homologous recombination repair. In melanocytes may modulate both UV-B-induced cell cycle regulation and apoptosis. Bos taurus (taxid: 9913) |
| >sp|P43246|MSH2_HUMAN DNA mismatch repair protein Msh2 OS=Homo sapiens GN=MSH2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 726 bits (1874), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/868 (44%), Positives = 553/868 (63%), Gaps = 41/868 (4%)
Query: 11 LKLDAKQARGFLSFYKTLPND-TRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLG 69
L+L++ GF+ F++ +P T VR FDR D+YTAHGE+A A+ + T ++ +G
Sbjct: 9 LQLESAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMG 68
Query: 70 -TGSDALSSVSVSKNMFETIARDLLLERTDHTLELYEGSGSN-------WRLVKSGTPGN 121
G+ L SV +SK FE+ +DLLL R + +E+Y+ N W L +PGN
Sbjct: 69 PAGAKNLQSVVLSKMNFESFVKDLLLVR-QYRVEVYKNRAGNKASKENDWYLAYKASPGN 127
Query: 122 LGSYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNV 181
L +ED+LF NN+M + +V + + + +G+GYVD +R LGL EF D+ F+N+
Sbjct: 128 LSQFEDILFGNNDMSASIGVVGVKMSAVDGQRQVGVGYVDSIQRKLGLCEFPDNDQFSNL 187
Query: 182 ESALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVR 241
E+ L+ +G KEC+LP + + LR + R G+++TERKK +F T+D+ QDL+RL++
Sbjct: 188 EALLIQIGPKECVLPG-GETAGDMGKLRQIIQRGGILITERKKADFSTKDIYQDLNRLLK 246
Query: 242 G--------SVEPVRDLVSGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRL 293
G +V P + ++A +L A++ + ELLSD+SN+G + + + YM+L
Sbjct: 247 GKKGEQMNSAVLPEME----NQVAVSSLSAVIKFLELLSDDSNFGQFELTTFDFSQYMKL 302
Query: 294 DSAAMRALNVLE-SKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLD 352
D AA+RALN+ + S D + SL L+N+ C G+RL++ W+KQPL+D N I RL+
Sbjct: 303 DIAAVRALNLFQGSVEDTTGSQSLAALLNK-CKTPQGQRLVNQWIKQPLMDKNRIEERLN 361
Query: 353 IVQAFVDDTALRQDLRQHL-KRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSAL 411
+V+AFV+D LRQ L++ L +R D+ RL +++ A LQ +LYQ +LP + AL
Sbjct: 362 LVEAFVEDAELRQTLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGINQLPNVIQAL 421
Query: 412 QQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLS 471
+++EG+ L+ ++ PL L D +KF ++ET++D+DQ+EN E+++ S+D LS
Sbjct: 422 EKHEGKHQKLLLAVFVTPLTDLRSD--FSKFQEMIETTLDMDQVENHEFLVKPSFDPNLS 479
Query: 472 ALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTT 531
L+ LE+++ S A DL L K +KLD QFG+ FR+T KEE +R
Sbjct: 480 ELREIMNDLEKKMQSTLISAARDLGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRN--NK 537
Query: 532 QFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLAT 591
F ++ +K+GVKFTN+KL L ++Y K EY+ Q +V ++ + + E ++L
Sbjct: 538 NFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKEIVNISSGYVEPMQTLND 597
Query: 592 MLSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKL 651
+L++LD ++SFA +++ P PY RP I G IIL+ SRH CVE QD + FIPND
Sbjct: 598 VLAQLDAVVSFAHVSNGAPVPYVRPAILEKGQGRIILKASRHACVEVQDEIAFIPNDVYF 657
Query: 652 IRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDC 711
+ K F IITGPNMGGKST+IRQ GV +LMAQ+G FVPC+ A +S+ DCI ARVGAGD
Sbjct: 658 EKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDS 717
Query: 712 QLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAP 771
QL+GVSTFM EMLETASIL+ AT SLIIIDELGRGTSTYDGFGLAWAI E++ +I A
Sbjct: 718 QLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAF 777
Query: 772 TLFATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSF 831
+FATHFHELTALA+ Q+ V N HV+A +T LTMLY+V+ G CDQSF
Sbjct: 778 CMFATHFHELTALAN---------QIPTVNNLHVTAL--TTEETLTMLYQVKKGVCDQSF 826
Query: 832 GIHVAEFANFPESVVTLAREKAAELEDF 859
GIHVAE ANFP+ V+ A++KA ELE+F
Sbjct: 827 GIHVAELANFPKHVIECAKQKALELEEF 854
|
Component of the post-replicative DNA mismatch repair system (MMR). Forms two different heterodimers: MutS alpha (MSH2-MSH6 heterodimer) and MutS beta (MSH2-MSH3 heterodimer) which binds to DNA mismatches thereby initiating DNA repair. When bound, heterodimers bend the DNA helix and shields approximately 20 base pairs. MutS alpha recognizes single base mismatches and dinucleotide insertion-deletion loops (IDL) in the DNA. MutS beta recognizes larger insertion-deletion loops up to 13 nucleotides long. After mismatch binding, MutS alpha or beta forms a ternary complex with the MutL alpha heterodimer, which is thought to be responsible for directing the downstream MMR events, including strand discrimination, excision, and resynthesis. ATP binding and hydrolysis play a pivotal role in mismatch repair functions. The ATPase activity associated with MutS alpha regulates binding similar to a molecular switch: mismatched DNA provokes ADP-->ATP exchange, resulting in a discernible conformational transition that converts MutS alpha into a sliding clamp capable of hydrolysis-independent diffusion along the DNA backbone. This transition is crucial for mismatch repair. MutS alpha may also play a role in DNA homologous recombination repair. In melanocytes may modulate both UV-B-induced cell cycle regulation and apoptosis. Homo sapiens (taxid: 9606) |
| >sp|P43247|MSH2_MOUSE DNA mismatch repair protein Msh2 OS=Mus musculus GN=Msh2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/864 (44%), Positives = 551/864 (63%), Gaps = 33/864 (3%)
Query: 11 LKLDAKQARGFLSFYKTLPND-TRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLG 69
L+L+ GF+ F++ +P + VR FDR D+YTAHGE+A A+ + T ++ +G
Sbjct: 9 LQLEGAAEAGFVRFFEGMPEKPSTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMG 68
Query: 70 -TGSDALSSVSVSKNMFETIARDLLLERTDHTLELYEGSGSN-------WRLVKSGTPGN 121
GS L SV +SK FE+ +DLLL R + +E+Y+ N W L +PGN
Sbjct: 69 PAGSKTLQSVVLSKMNFESFVKDLLLVR-QYRVEVYKNKAGNKASKENEWYLAFKASPGN 127
Query: 122 LGSYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNV 181
L +ED+LF NN+M + ++ + + +G+GYVD T+R LGL EF ++ F+N+
Sbjct: 128 LSQFEDILFGNNDMSASVGVMGIKMAVVDGQRHVGVGYVDSTQRKLGLCEFPENDQFSNL 187
Query: 182 ESALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVR 241
E+ L+ +G KEC+LP + + LR + R G+++TERK+ +F T+D+ QDL+RL++
Sbjct: 188 EALLIQIGPKECVLPG-GETTGDMGKLRQVIQRGGILITERKRADFSTKDIYQDLNRLLK 246
Query: 242 GSVEPVRDLVSGFE----IAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAA 297
G + + E +A +L A++ + ELLSD+SN+G + + + YM+LD AA
Sbjct: 247 GKKGEQINSAALPEMENQVAVSSLSAVIKFLELLSDDSNFGQFELATFDFSQYMKLDMAA 306
Query: 298 MRALNVLE-SKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQA 356
+RALN+ + S D + SL L+N+ C G+RL++ W+KQPL+D N I RL++V+A
Sbjct: 307 VRALNLFQGSVEDTTGSQSLAALLNK-CKTAQGQRLVNQWIKQPLMDRNRIEERLNLVEA 365
Query: 357 FVDDTALRQDLRQHL-KRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYE 415
FV+D+ LRQ L++ L +R D+ RL +++ A LQ +LYQ +LP + AL++YE
Sbjct: 366 FVEDSELRQSLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGINQLPSVIQALEKYE 425
Query: 416 GQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALKN 475
G+ +L+ ++ PL L D +KF ++ET++D+DQ+EN E+++ S+D LS L+
Sbjct: 426 GRHQALLLAVFVTPLIDLRSD--FSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSELRE 483
Query: 476 EQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIV 535
+ LE+++ S A L L K +KLD QFG+ FR+T KEE +R F
Sbjct: 484 VMDGLEKKMQSTLINAARGLGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRN--NKNFST 541
Query: 536 LETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSE 595
++ +K+GVKFTN++L L ++Y K EY+ Q +V ++ + + E ++L +L+
Sbjct: 542 VDIQKNGVKFTNSELSSLNEEYTKNKGEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAH 601
Query: 596 LDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGK 655
LD ++SFA ++++ P PY RP I G IIL+ SRH CVE QD V FIPND + K
Sbjct: 602 LDAIVSFAHVSNAAPVPYVRPVILEKGKGRIILKASRHACVEVQDEVAFIPNDVHFEKDK 661
Query: 656 SWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRG 715
F IITGPNMGGKST+IRQ GV +LMAQ+G FVPC+ A +S+ DCI ARVGAGD QL+G
Sbjct: 662 QMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKG 721
Query: 716 VSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFA 775
VSTFM EMLETASIL+ AT SLIIIDELGRGTSTYDGFGLAWAI +++ +I A +FA
Sbjct: 722 VSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISDYIATKIGAFCMFA 781
Query: 776 THFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHV 835
THFHELTALA+ Q+ V N HV+A +T LTMLY+V+ G CDQSFGIHV
Sbjct: 782 THFHELTALAN---------QIPTVNNLHVTAL--TTEETLTMLYQVKKGVCDQSFGIHV 830
Query: 836 AEFANFPESVVTLAREKAAELEDF 859
AE ANFP V+ A++KA ELE+F
Sbjct: 831 AELANFPRHVIACAKQKALELEEF 854
|
Component of the post-replicative DNA mismatch repair system (MMR). Forms two different heterodimers: MutS alpha (MSH2-MSH6 heterodimer) and MutS beta (MSH2-MSH3 heterodimer) which binds to DNA mismatches thereby initiating DNA repair. When bound, heterodimers bend the DNA helix and shields approximately 20 base pairs. MutS alpha recognizes single base mismatches and dinucleotide insertion-deletion loops (IDL) in the DNA. MutS beta recognizes larger insertion-deletion loops up to 13 nucleotides long. After mismatch binding, MutS alpha or beta forms a ternary complex with the MutL alpha heterodimer, which is thought to be responsible for directing the downstream MMR events, including strand discrimination, excision, and resynthesis. ATP binding and hydrolysis play a pivotal role in mismatch repair functions. The ATPase activity associated with MutS alpha regulates binding similar to a molecular switch: mismatched DNA provokes ADP-->ATP exchange, resulting in a discernible conformational transition that converts MutS alpha into a sliding clamp capable of hydrolysis-independent diffusion along the DNA backbone. This transition is crucial for mismatch repair. MutS alpha may also play a role in DNA homologous recombination repair. In melanocytes may modulate both UV-B-induced cell cycle regulation and apoptosis. Mus musculus (taxid: 10090) |
| >sp|P54275|MSH2_RAT DNA mismatch repair protein Msh2 OS=Rattus norvegicus GN=Msh2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/868 (43%), Positives = 546/868 (62%), Gaps = 41/868 (4%)
Query: 11 LKLDAKQARGFLSFYKTLPND-TRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLG 69
L+L+ GF+ F++ +P + V FDR D+YTAHGE+A A+ + T ++ +G
Sbjct: 9 LQLEGAAEVGFVRFFEGMPEKPSTTVGLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMG 68
Query: 70 -TGSDALSSVSVSKNMFETIARDLLLERTDHTLELYEGSGSN-------WRLVKSGTPGN 121
G+ L +V +SK FE+ +DLLL R + +E+Y+ N W L +PGN
Sbjct: 69 PAGAKTLQTVVLSKMNFESFVKDLLLVR-HYRVEVYKNKAGNKASKENDWYLAYKASPGN 127
Query: 122 LGSYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNV 181
L +ED+LF NN+M + I+ + + + +G+G VD T+R LGL EF D+ F+N+
Sbjct: 128 LSQFEDILFGNNDMATSIGIMGIKLSTVDGQRQVGVGDVDSTQRKLGLCEFPDNDQFSNL 187
Query: 182 ESALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVR 241
E+ L+ +G KEC+LP + + LR + R G+++TERK+ +F T+D+ QDL+RL++
Sbjct: 188 EALLIQIGPKECILPG-GETAGDMGKLRQVIQRGGILITERKRIDFSTKDIYQDLNRLLK 246
Query: 242 G--------SVEPVRDLVSGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRL 293
G +V P + ++A +L A++ + ELLSD+SN+G + + + YM+L
Sbjct: 247 GRKGEQMNSAVLPEME----NQVAVSSLSAVIKFLELLSDDSNFGQFELATFDFSQYMKL 302
Query: 294 DSAAMRALNVLE-SKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLD 352
D AA+RALN+ + S D + SL +N+ C G+RL+ W+KQPL+D N I RL+
Sbjct: 303 DMAAVRALNLFQGSVEDTTGSQSLAAFLNK-CKTAQGQRLVSQWIKQPLMDKNRIEERLN 361
Query: 353 IVQAFVDDTALRQDLRQHL-KRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSAL 411
+V+AFV+D+ LR+ L++ L +R D+ RL +++ A LQ +LYQ +LP + AL
Sbjct: 362 LVEAFVEDSELRRALQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGVKQLPNVIQAL 421
Query: 412 QQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLS 471
++Y+G+ +L+ ++ PL L D +KF +ET++D+DQ+EN E+++ S+D LS
Sbjct: 422 EKYQGRHQALLLAVFVTPLTDLRSD--FSKFQEKIETTLDMDQVENHEFLVKPSFDPNLS 479
Query: 472 ALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTT 531
L+ + LE+++ S A L L K +KLD QFG+ FR+T KEE +R
Sbjct: 480 ELREVMDGLEKKMQSTLISAARGLGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRN--NK 537
Query: 532 QFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLAT 591
F ++ +K+GVKFTN++L L ++Y K EY+ Q +V ++ + + E +++
Sbjct: 538 NFSTVDIQKNGVKFTNSELSSLNEEYTKNKGEYEEAQDAIVKEIVNISSGYVEPMQTVND 597
Query: 592 MLSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKL 651
+L+ LD ++SFA ++++ P PY RP I G II++ SRH CVE Q V FIPND
Sbjct: 598 VLAHLDAVVSFAHVSNAAPVPYVRPVILEKGKGRIIVKASRHACVEVQHDVAFIPNDVHF 657
Query: 652 IRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDC 711
+ K F IITGPNMGGKST+IRQ GV +LMAQ+G FVPC+ A +S+ DCI ARVGAGD
Sbjct: 658 EKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDS 717
Query: 712 QLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAP 771
QL+GVSTFM EMLETASIL+ AT SLIIIDELGRGTSTYDGFGLAWAI E++ I A
Sbjct: 718 QLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATNIGAF 777
Query: 772 TLFATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSF 831
+FATHFHELTALA Q+ V N HV+A +T LTMLY+V+ G CDQSF
Sbjct: 778 CMFATHFHELTALA---------SQIPTVNNLHVTAL--TTEETLTMLYQVKTGVCDQSF 826
Query: 832 GIHVAEFANFPESVVTLAREKAAELEDF 859
GIHVAE ANFP V+ A++KA ELE+F
Sbjct: 827 GIHVAELANFPRHVIECAKQKALELEEF 854
|
Component of the post-replicative DNA mismatch repair system (MMR). Forms two different heterodimers: MutS alpha (MSH2-MSH6 heterodimer) and MutS beta (MSH2-MSH3 heterodimer) which binds to DNA mismatches thereby initiating DNA repair. When bound, heterodimers bend the DNA helix and shields approximately 20 base pairs. MutS alpha recognizes single base mismatches and dinucleotide insertion-deletion loops (IDL) in the DNA. MutS beta recognizes larger insertion-deletion loops up to 13 nucleotides long. After mismatch binding, MutS alpha or beta forms a ternary complex with the MutL alpha heterodimer, which is thought to be responsible for directing the downstream MMR events, including strand discrimination, excision, and resynthesis. ATP binding and hydrolysis play a pivotal role in mismatch repair functions. The ATPase activity associated with MutS alpha regulates binding similar to a molecular switch: mismatched DNA provokes ADP-->ATP exchange, resulting in a discernible conformational transition that converts MutS alpha into a sliding clamp capable of hydrolysis-independent diffusion along the DNA backbone. This transition is crucial for mismatch repair. MutS alpha may also play a role in DNA homologous recombination repair. In melanocytes may modulate both UV-B-induced cell cycle regulation and apoptosis. Rattus norvegicus (taxid: 10116) |
| >sp|O13396|MSH2_NEUCR DNA mismatch repair protein msh-2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=msh-2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/887 (43%), Positives = 538/887 (60%), Gaps = 63/887 (7%)
Query: 9 PELKLDAKQARGFLSFYKTLPN-DTRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQ 67
PELK+D + GF+ FYK+LP A+R FDR D+YTAHG++ATFIA+T Y TT+ +RQ
Sbjct: 5 PELKVDDEH--GFIRFYKSLPQLGEEAIRIFDRGDWYTAHGDDATFIARTVYKTTSVIRQ 62
Query: 68 LG-TGSDALSSVSVSKNMFETIARDLLLERTDHTLELYEGSGS--NWRLVKSGTPGNLGS 124
LG + L SV+++ +F R+ L + +E++ NW++VK +PGNL
Sbjct: 63 LGRSDHTGLPSVTMTVTVFRQFLREALF-KLGKRIEIWASPSGRMNWKVVKQASPGNLQD 121
Query: 125 YEDVLFANNEMQDTPVIVALFPNFRENGC-TIGLGYVDLTKRVLGLAEFLDDSHFTNVES 183
ED L + + PVI+A+ + + + T+G+ + D + R LG++EFLD+ ++N E+
Sbjct: 122 VEDEL--GGQFEGAPVILAVKISAKASEARTVGVCFADASVRELGVSEFLDNDLYSNFEA 179
Query: 184 ALVALGCKECLLPT---EAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLV 240
L+ LG KEC++ E K E LR + CGV + ER EF T+D+ QDL RL+
Sbjct: 180 LLIQLGVKECIVTQDKGEKEKDPELAKLRQIIDNCGVAIAERSAGEFGTKDIEQDLSRLL 239
Query: 241 R----GSVEPVRDLVSGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSA 296
+ S+ P DL ++A G+ AL+ Y +L D SN+G Y + ++ L +M+LD+A
Sbjct: 240 KDERAASLLPQTDL----KLAMGSASALIKYLGILHDPSNFGQYQLYQHDLAQFMKLDAA 295
Query: 297 AMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQA 356
A++ALN++ D KN SL+GL+N C +G RLL WLKQPL++ EI R +V+A
Sbjct: 296 ALKALNLMPGARDGAKNMSLYGLLNH-CKTPVGSRLLSQWLKQPLMNAEEIEKRQQLVEA 354
Query: 357 FVDDTALRQDLRQ-HLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYE 415
F +DT LRQ +++ HL+ I D+ RL ++ +A L+ +V+ YQ IRLP +
Sbjct: 355 FANDTELRQSMQEEHLRSIPDLYRLSKRFQRGKATLEDVVRAYQVVIRLP-------GFI 407
Query: 416 GQFSSLIKERYLDPLESLTDD------DHLNKFIALVETSVDLDQLENGEYMISSSYDTG 469
G ++ E Y DPL+ + + D L K +VET+VDLD L+N E++I +D
Sbjct: 408 GTLEGVMDEAYRDPLDEVYTNKLRELSDSLVKLQEMVETTVDLDALDNHEFIIKPEFDDS 467
Query: 470 LSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKL 529
L ++ + + L + + + A DL +K + L+ G R+T+ E IR
Sbjct: 468 LRIIRKKLDRLRTDMDNEFAEAAEDLGQEREKKIFLENHKVHGWCMRLTRTEAGCIRN-- 525
Query: 530 TTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSL 589
++++ T+K+GV FT L+ L ++ ++ + Y Q LVN V+ A ++ + + L
Sbjct: 526 NSRYLECSTQKNGVYFTTKTLQALRREFDQLSQNYNRTQSSLVNEVVGVAASYCPVLERL 585
Query: 590 ATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDC 649
A +L+ LDV++SFA + P Y RP I+P G +L +RHPC+E QD V FI ND
Sbjct: 586 AAVLAHLDVIVSFAHCSVHAPISYVRPKIHPRGTGRTVLTEARHPCMEVQDDVTFITNDV 645
Query: 650 KLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAG 709
L R S F IITGPNMGGKST+IRQ+GV LMAQ+G FVPC A +++ D I ARVGA
Sbjct: 646 TLTREDSSFLIITGPNMGGKSTYIRQIGVIALMAQIGCFVPCSSAELTIFDSILARVGAS 705
Query: 710 DCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIR 769
D QL+GVSTFM EMLETA+ILK AT SLIIIDELGRGTSTYDGFGLAWAI EH+V+EI
Sbjct: 706 DSQLKGVSTFMAEMLETANILKSATAESLIIIDELGRGTSTYDGFGLAWAISEHIVKEIG 765
Query: 770 APTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDST----------------S 813
LFATHFHELTALA + N V N HV+AHI T
Sbjct: 766 CFALFATHFHELTALADQYPN---------VKNLHVTAHISGTDTDTDVITDEDEKAKKK 816
Query: 814 RKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFT 860
R++T+LYKVEPG CDQSFGIHVAE FP+ VV +A+ KA ELEDFT
Sbjct: 817 REVTLLYKVEPGICDQSFGIHVAELVRFPDKVVRMAKRKADELEDFT 863
|
Involved in post-replicative DNA-mismatch repair. Binds to mismatch-containing DNA. Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110) |
| >sp|Q553L4|MSH2_DICDI DNA mismatch repair protein Msh2 OS=Dictyostelium discoideum GN=msh2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 614 bits (1584), Expect = e-175, Method: Compositional matrix adjust.
Identities = 358/917 (39%), Positives = 541/917 (58%), Gaps = 86/917 (9%)
Query: 2 DDEQNKLPELKLDAKQARGFLSFYKTLPN---DTRAVRFFDRRDYYTAHGENATFIAKTY 58
D+EQ + ++ L K+ + F++F+++L + DT +R FDR+ YY+ HGE+A F+A +
Sbjct: 3 DNEQEESSQVVL--KEDKTFVTFFQSLVSSNEDTDTIRLFDRKGYYSIHGEDAVFVAMMH 60
Query: 59 YHTTTALR-----------QLGTGSDA-----------------LSSVSVSKNM-FETIA 89
+ + +L+ ++ +D L+ +++ + FE I
Sbjct: 61 FKSKKSLKYWSISDPNPKKKIKIDNDGSLTTTASSSQQQQQELGLAVLTIRQGYEFENIV 120
Query: 90 RDLLLERTDHTLELYE---GSGSNWRLVKSGTPGNLGSYEDVLFANNEMQDTPVIVALFP 146
++LL E+ +E++ S W L+K G+PGN +EDVL N + V++AL
Sbjct: 121 KELLDEK--KKIEIWSMKPNSKQQWELIKKGSPGNTQMFEDVLLNGN--CEGSVMMALKV 176
Query: 147 NFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECK 206
+ G+ + D T + +G+++F+D+ + +N+ S ++ + KECLL + K+ + +
Sbjct: 177 TREKGSIVFGISFGDATFKTIGVSQFMDNDNLSNLSSFIMQMSVKECLLCCDQ-KNYDYQ 235
Query: 207 TLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVRGSVEPVRDLVSGFEIAPGALGALLS 266
+++ L+ G+ TE K++F +++ QDL RL+ + D+ E A + L+
Sbjct: 236 KVKEKLSDAGIPFTELPKSDFSSKNAEQDLTRLLGSVKNNLPDIEQ--EHAIQSASCLIK 293
Query: 267 YAELLSDESNYGNYYIRKYSLDSYMRLDSAAMRALNVLESK-----------------TD 309
+ +LLS+ + +G + + KY LD YM+LDS++ + L++++ K +
Sbjct: 294 HLDLLSNPNYFGKFKLEKYDLDRYMKLDSSSFKGLHIIDLKDSSVSAAAGGGGAGGASSS 353
Query: 310 ANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQ 369
+NK+ SL+ L+N+ C MG RLL W+KQPLL+ EI ARL+ V+AF +D LRQ LR
Sbjct: 354 SNKDQSLYNLLNQ-CNTPMGSRLLLQWVKQPLLNAEEIEARLNFVEAFYNDLELRQSLRS 412
Query: 370 H-LKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLD 428
+ LK+I D++RL L ++A L+ V LY RLP + +L + LIK +++
Sbjct: 413 NDLKKIGDLDRLSKKLHGQKATLEDCVNLYGIVTRLPVVLQSLNNHSSIHQELIKVNFIE 472
Query: 429 PLESLTDDDHLNKFIALVETSVDLDQLENG-EYMISSSYDTGLSALKNEQESLERQIHSL 487
LES+ D KF A+VE ++DLD + EY+I SS+D L ++ +++ + +I
Sbjct: 473 SLESIISD--FAKFCAMVEKTIDLDLANDKHEYVIRSSFDETLRGIQLKKDQISNKIERF 530
Query: 488 HKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTN 547
A DL+L K +KL + + RI++K+E IR K ++IV T KDGV+F
Sbjct: 531 RVDIADDLNLDEAK-VKLHYSEKDMFLLRISRKDEVAIRDK--KKYIVHATAKDGVRFAT 587
Query: 548 TKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLAS 607
++ L + Y+K EY + Q L R +Q A +F + + L+++++ LDV ++ + ++S
Sbjct: 588 REIDTLNEAYKKWSAEYLDKQDGLAKRTLQIAASFVPLIEDLSSLIATLDVFVTLSHVSS 647
Query: 608 SCPTPYTRPDINP-----PDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIIT 662
P P+ RP+I P G +I+ G RHPCVE QD VNFI ND L RG+S FQIIT
Sbjct: 648 IAPIPFIRPEIIPLGSDENGAGTVII-GGRHPCVEIQDNVNFIANDIDLTRGQSQFQIIT 706
Query: 663 GPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQE 722
GPNMGGKSTFIRQVG+ +LMAQ+G FVP +A+I+V DCI +RVGAGD QLRGVSTFM E
Sbjct: 707 GPNMGGKSTFIRQVGLIVLMAQIGCFVPAQKATIAVVDCILSRVGAGDSQLRGVSTFMAE 766
Query: 723 MLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT 782
MLET+ ILK AT SLIIIDELGRGTSTYDGFGLAW I E++ +I LFATHFHELT
Sbjct: 767 MLETSYILKVATKNSLIIIDELGRGTSTYDGFGLAWGIAEYICNQIGGFCLFATHFHELT 826
Query: 783 ALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFP 842
L + + V N HVSA + + T+LYKVE G CDQSFGIHVA ANFP
Sbjct: 827 IL---------SDLLPMVKNLHVSASTQNNT--FTLLYKVEQGPCDQSFGIHVAILANFP 875
Query: 843 ESVVTLAREKAAELEDF 859
V+ A++KA ELE F
Sbjct: 876 SQVIENAKQKAKELESF 892
|
Component of the post-replicative DNA mismatch repair system (MMR). Forms two different heterodimers: MutS alpha (msh2-msh6 heterodimer) and MutS beta (msh2-msh3 heterodimer) which binds to DNA mismatches thereby initiating DNA repair. When bound, heterodimers bend the DNA helix. MutS alpha recognizes single base mismatches and dinucleotide insertion-deletion loops (IDL) in the DNA. MutS beta recognizes larger insertion-deletion loops. After mismatch binding, MutS alpha or beta forms a ternary complex with the MutL alpha heterodimer, which is thought to be responsible for directing the downstream MMR events, including strand discrimination, excision, and resynthesis. ATP binding and hydrolysis play a pivotal role in mismatch repair functions. The ATPase activity associated with MutS alpha regulates binding similar to a molecular switch: mismatched DNA provokes ADP-->ATP exchange, resulting in a discernible conformational transition that converts MutS alpha into a sliding clamp capable of hydrolysis-independent diffusion along the DNA backbone. This transition is crucial for mismatch repair. MutS alpha may also play a role in DNA homologous recombination repair. Dictyostelium discoideum (taxid: 44689) |
| >sp|P25847|MSH2_YEAST DNA mismatch repair protein MSH2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MSH2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 595 bits (1535), Expect = e-169, Method: Compositional matrix adjust.
Identities = 353/906 (38%), Positives = 522/906 (57%), Gaps = 84/906 (9%)
Query: 9 PELKL-DAKQARGFLSFYKTLPNDT-RAVRFFDRRDYYTAHGENATFIAKTYYHTTTALR 66
PELK D + R F Y LP + +R D+ DYYT G +A F+A + YHT + L+
Sbjct: 6 PELKFSDVSEERNFYKKYTGLPKKPLKTIRLVDKGDYYTVIGSDAIFVADSVYHTQSVLK 65
Query: 67 QLGTGSDALSSVSVSKNMFE-----TIARDLLLERTD-------HTLELYEGSGSNWRLV 114
L V+ +KN E T++ +L + +E+Y+ W+L+
Sbjct: 66 NC-----QLDPVT-AKNFHEPTKYVTVSLQVLATLLKLCLLDLGYKVEIYD---KGWKLI 116
Query: 115 KSGTPGNLGSYEDVLFANNEMQDTPVIVALFP---NFRENGCTIGLGYVDLTKRVLGLAE 171
KS +PGN+ +++ N D+ +I+A N ++ C IG+ ++D T +G+ +
Sbjct: 117 KSASPGNIEQVNELMNMN---IDSSIIIASLKVQWNSQDGNCIIGVAFIDTTAYKVGMLD 173
Query: 172 FLDDSHFTNVESALVALGCKECL---LPTEAVKSSECKTLRDALTRCGVMLTERKKTEFK 228
+D+ ++N+ES L+ LG KECL L + + ++E + + + + RCG ++T K +EF
Sbjct: 174 IVDNEVYSNLESFLIQLGVKECLVQDLTSNSNSNAEMQKVINVIDRCGCVVTLLKNSEFS 233
Query: 229 TRDLVQDLDRLVRGSVEPVRDLVSGF-EIAPGALGALLSYAELLSDESNYGNYYIRKYSL 287
+D+ DL +L+ + L + +++ GA AL+ Y +LLS++ G Y + ++ L
Sbjct: 234 EKDVELDLTKLLGDDL--ALSLPQKYSKLSMGACNALIGYLQLLSEQDQVGKYELVEHKL 291
Query: 288 DSYMRLDSAAMRALNVLE------------------SKTDANKNFSLFGLMNRTCTAGMG 329
+M+LD++A++ALN+ S ++ K SLF L+N C G
Sbjct: 292 KEFMKLDASAIKALNLFPQGPQNPFGSNNLAVSGFTSAGNSGKVTSLFQLLNH-CKTNAG 350
Query: 330 KRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDL-RQHLKRISDIERLMHNLEKRR 388
RLL+ WLKQPL +++EIN R D+V +D LRQ L ++L I DI RL L KR
Sbjct: 351 VRLLNEWLKQPLTNIDEINKRHDLVDYLIDQIELRQMLTSEYLPMIPDIRRLTKKLNKR- 409
Query: 389 AGLQQIVKLYQSSIRLPYIRSALQQY------EGQFSSLIKERYLDPLESLTDDDHLNKF 442
L+ ++K+YQ S R+P I + + L++ +L PL + L+KF
Sbjct: 410 GNLEDVLKIYQFSKRIPEIVQVFTSFLEDDSPTEPVNELVRSVWLAPLSHHVEP--LSKF 467
Query: 443 IALVETSVDLDQLE-NGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDK 501
+VET+VDLD E N E+MI ++ L ++++ ++L +IHS+H +A DL DK
Sbjct: 468 EEMVETTVDLDAYEENNEFMIKVEFNEELGKIRSKLDTLRDEIHSIHLDSAEDLGFDPDK 527
Query: 502 ALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVL 561
LKL+ G R+T+ + ++RK ++I L T K G+ F+ +LK + ++ +
Sbjct: 528 KLKLENHHLHGWCMRLTRNDAKELRKH--KKYIELSTVKAGIFFSTKQLKSIANETNILQ 585
Query: 562 EEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPP 621
+EY Q LV +I +T++ +F+ L+ +L+ LDV+ SFA +S P PY RP ++P
Sbjct: 586 KEYDKQQSALVREIINITLTYTPVFEKLSLVLAHLDVIASFAHTSSYAPIPYIRPKLHPM 645
Query: 622 DVGD-IILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI 680
D L SRHP +E QD ++FI ND L GK F IITGPNMGGKST+IRQVGV
Sbjct: 646 DSERRTHLISSRHPVLEMQDDISFISNDVTLESGKGDFLIITGPNMGGKSTYIRQVGVIS 705
Query: 681 LMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLII 740
LMAQ+G FVPC+ A I++ D I RVGAGD QL+GVSTFM E+LETASILK A+ SLII
Sbjct: 706 LMAQIGCFVPCEEAEIAIVDAILCRVGAGDSQLKGVSTFMVEILETASILKNASKNSLII 765
Query: 741 IDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGV 800
+DELGRGTSTYDGFGLAWAI EH+ +I LFATHFHELT L ++++ V
Sbjct: 766 VDELGRGTSTYDGFGLAWAIAEHIASKIGCFALFATHFHELTEL---------SEKLPNV 816
Query: 801 ANYHVSAHIDSTSRK-------LTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKA 853
N HV AHI+ ++ +T+LYKVEPG DQSFGIHVAE FPE +V +A+ KA
Sbjct: 817 KNMHVVAHIEKNLKEQKHDDEDITLLYKVEPGISDQSFGIHVAEVVQFPEKIVKMAKRKA 876
Query: 854 AELEDF 859
EL+D
Sbjct: 877 NELDDL 882
|
Component of the post-replicative DNA mismatch repair system (MMR). Forms two different heterodimers: MutS alpha (MSH2-MSH6 heterodimer) and MutS beta (MSH2-MSH3 heterodimer), which bind to DNA mismatches thereby initiating DNA repair. MSH2 seems to act as a scaffold for the other MutS homologs that provide substrate-binding and substrate-specificity. When bound, heterodimers bend the DNA helix and shield approximately 20 base pairs. MutS alpha acts mainly to repair base-base and single insertion-deletion mismatches that occur during replication, but can also repair longer insertion-deletion loops (IDLs), although with decreasing efficiency as the size of the extrahelical loop increases. MutS beta acts mainly to repair IDLs from 2 to 13 nucleotides in size, but can also repair base-base and single insertion-deletion mismatches. After mismatch binding, MutS alpha or beta form a ternary complex with a MutL heterodimer, which is thought to be responsible for directing the downstream MMR events, including strand discrimination, excision, and resynthesis. ATP binding and hydrolysis play a pivotal role in mismatch repair functions. Both subunits bind ATP, but with differing affinities, and their ATPase kinetics are also very different. MSH6 binds and hydrolyzes ATP rapidly, whereas MSH2 catalyzes ATP at a substantially slower rate. Binding to a mismatched base pair suppresses MSH6-catalyzed ATP hydrolysis, but not the activity of MSH2. ATP binding to both subunits is necessary to trigger a change in MutS alpha interaction with mismatched DNA, converting MutS alpha into a sliding clamp capable of hydrolysis-independent movement along DNA, and also facilitates formation of ternary complexes containing MutS and MutL proteins and the mismatch. MutS beta also has a role in regulation of heteroduplex formation during mitotic and meiotic recombination. MutS beta binds to DNA flap structures predicted to form during recombination, and is required for 3' non-homologous tail removal (NHTR). MutS beta-binding alters the DNA conformation of its substrate at the ds/ssDNA junction and may facilitate its recognition and/or cleavage by the downstream nucleotide excision repair (NER) RAD1-RAD10 endonuclease. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 888 | ||||||
| 255541826 | 936 | DNA mismatch repair protein MSH2, putati | 0.979 | 0.929 | 0.890 | 0.0 | |
| 224118890 | 944 | predicted protein [Populus trichocarpa] | 0.980 | 0.922 | 0.857 | 0.0 | |
| 356563103 | 942 | PREDICTED: DNA mismatch repair protein M | 0.971 | 0.916 | 0.856 | 0.0 | |
| 297734165 | 945 | unnamed protein product [Vitis vinifera] | 0.975 | 0.916 | 0.862 | 0.0 | |
| 350538025 | 943 | mismatch repair protein [Solanum lycoper | 0.976 | 0.919 | 0.816 | 0.0 | |
| 49615724 | 942 | DNA mismatch repair protein [Petunia x h | 0.976 | 0.920 | 0.814 | 0.0 | |
| 359491419 | 902 | PREDICTED: DNA mismatch repair protein M | 0.936 | 0.922 | 0.861 | 0.0 | |
| 449440909 | 938 | PREDICTED: DNA mismatch repair protein M | 0.966 | 0.914 | 0.844 | 0.0 | |
| 42565226 | 937 | DNA mismatch repair protein Msh2 [Arabid | 0.969 | 0.918 | 0.799 | 0.0 | |
| 4139230 | 937 | mismatch repair protein [Arabidopsis tha | 0.969 | 0.918 | 0.799 | 0.0 |
| >gi|255541826|ref|XP_002511977.1| DNA mismatch repair protein MSH2, putative [Ricinus communis] gi|223549157|gb|EEF50646.1| DNA mismatch repair protein MSH2, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1632 bits (4226), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 776/871 (89%), Positives = 829/871 (95%), Gaps = 1/871 (0%)
Query: 3 DEQNKLPELKLDAKQARGFLSFYKTLPNDTRAVRFFDRRDYYTAHGENATFIAKTYYHTT 62
DE NKLPELKLDAKQA+GFLSF+KTLP+D RAVR FDRRDYYT+HGENATFIAKTYYHTT
Sbjct: 2 DEDNKLPELKLDAKQAQGFLSFFKTLPHDPRAVRVFDRRDYYTSHGENATFIAKTYYHTT 61
Query: 63 TALRQLGTGSDALSSVSVSKNMFETIARDLLLERTDHTLELYEGSGSNWRLVKSGTPGNL 122
TALRQLG+G D LSSVS+SKNMFETIARDLLLERTDHTLELYEGSGSNWRLVKSGTPGNL
Sbjct: 62 TALRQLGSGPDGLSSVSISKNMFETIARDLLLERTDHTLELYEGSGSNWRLVKSGTPGNL 121
Query: 123 GSYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNVE 182
GS+EDVLFANNEMQD+P + A+ PNFRENGC+IGLGYVDLTKR+LGLAEFLDDSHFTN+E
Sbjct: 122 GSFEDVLFANNEMQDSPAVAAVIPNFRENGCSIGLGYVDLTKRILGLAEFLDDSHFTNLE 181
Query: 183 SALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVRG 242
SALVALGCKECLLP E+ KS EC+TL DALTRCGVMLTERKK EFKTRDLV+DL RLV+G
Sbjct: 182 SALVALGCKECLLPIESGKSIECRTLHDALTRCGVMLTERKKNEFKTRDLVEDLGRLVKG 241
Query: 243 SVEPVRDLVSGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAAMRALN 302
S+EPVRDLVSGFE APGALGALLSYAELL+DESNYGNY IRKY+LDSYMRLDSAAMRALN
Sbjct: 242 SIEPVRDLVSGFEFAPGALGALLSYAELLADESNYGNYTIRKYNLDSYMRLDSAAMRALN 301
Query: 303 VLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTA 362
VLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEIN+RLD+VQAFV+DTA
Sbjct: 302 VLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINSRLDLVQAFVEDTA 361
Query: 363 LRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLI 422
LRQDLRQHLKRISDIERL+HNLEKRRAGLQ IVKLYQSSIRLPYIR AL +Y+GQFSSLI
Sbjct: 362 LRQDLRQHLKRISDIERLVHNLEKRRAGLQHIVKLYQSSIRLPYIRGALDKYDGQFSSLI 421
Query: 423 KERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALKNEQESLER 482
KERYLDPLESLTDDDHLNKFIALVETSVDLDQL+NGEY+IS SYD LSALK+EQESLE
Sbjct: 422 KERYLDPLESLTDDDHLNKFIALVETSVDLDQLDNGEYLISPSYDPALSALKDEQESLEC 481
Query: 483 QIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDG 542
QIH+LHKQTA DLDLP DK LKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDG
Sbjct: 482 QIHNLHKQTAQDLDLPQDKGLKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDG 541
Query: 543 VKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSF 602
VKFTNTKLKKLGDQYQK++EEYKNCQKELVNRV+QTA TFSE+FKSLA +LS+LDVLLSF
Sbjct: 542 VKFTNTKLKKLGDQYQKIVEEYKNCQKELVNRVVQTAATFSEVFKSLAGLLSQLDVLLSF 601
Query: 603 ADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIIT 662
ADLA+SCPTPYTRPDI P DVG+IILEGSRHPCVEAQDWVNFIPNDCKLIRG+SWFQIIT
Sbjct: 602 ADLATSCPTPYTRPDITPSDVGNIILEGSRHPCVEAQDWVNFIPNDCKLIRGESWFQIIT 661
Query: 663 GPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQE 722
GPNMGGKSTFIRQVGVNILMAQVGSFVPCD+ASISVRDCIFARVGAGDCQLRGVSTFMQE
Sbjct: 662 GPNMGGKSTFIRQVGVNILMAQVGSFVPCDKASISVRDCIFARVGAGDCQLRGVSTFMQE 721
Query: 723 MLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT 782
MLETASILKGATD+SLIIIDELGRGTSTYDGFGLAWAICEHLV+ I+APTLFATHFHELT
Sbjct: 722 MLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHLVQVIKAPTLFATHFHELT 781
Query: 783 ALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFP 842
LA E A E + KQ+ GVANYHVSAHIDS++RKLTMLYKVEPGACDQSFGIHVAEFANFP
Sbjct: 782 GLADEKA-EPHMKQIAGVANYHVSAHIDSSNRKLTMLYKVEPGACDQSFGIHVAEFANFP 840
Query: 843 ESVVTLAREKAAELEDFTPSAVISDDAKIEV 873
ESVV LAREKAAELEDF+P+A++S+D +V
Sbjct: 841 ESVVALAREKAAELEDFSPNAIVSNDTTEKV 871
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224118890|ref|XP_002317931.1| predicted protein [Populus trichocarpa] gi|222858604|gb|EEE96151.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1578 bits (4087), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 748/872 (85%), Positives = 816/872 (93%), Gaps = 1/872 (0%)
Query: 3 DEQNKLPELKLDAKQARGFLSFYKTLPNDTRAVRFFDRRDYYTAHGENATFIAKTYYHTT 62
+EQNKLPELKLDAKQA+GFLSF+KTLP+D RAVR FDRRDYYT H ENATFIAKTYYHTT
Sbjct: 8 EEQNKLPELKLDAKQAQGFLSFFKTLPHDPRAVRVFDRRDYYTVHAENATFIAKTYYHTT 67
Query: 63 TALRQLGTGSDALSSVSVSKNMFETIARDLLLERTDHTLELYEGSGSNWRLVKSGTPGNL 122
TALRQLG+GS+ LSSVS+SKNMFETIARDLLLERTDHTLELYEGSGSNW+LVKSGTPGNL
Sbjct: 68 TALRQLGSGSNGLSSVSISKNMFETIARDLLLERTDHTLELYEGSGSNWKLVKSGTPGNL 127
Query: 123 GSYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNVE 182
GS+EDVLFANN+MQD+PV+VAL NFRE GCT+GL YVDLTKRVLGLAEFLDDSHFTNVE
Sbjct: 128 GSFEDVLFANNDMQDSPVVVALLLNFREKGCTVGLSYVDLTKRVLGLAEFLDDSHFTNVE 187
Query: 183 SALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVRG 242
SALVAL CKECLLP E+ KS++C+TL D LT+CGVMLTERKK EFKTRDLVQDL RLV+G
Sbjct: 188 SALVALSCKECLLPMESGKSNDCRTLHDVLTKCGVMLTERKKNEFKTRDLVQDLGRLVKG 247
Query: 243 SVEPVRDLVSGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAAMRALN 302
+EPVRDLVSGFE APGALGALLSYAELL+DESNYGNY IRKY+LDSYMRLDSAA RALN
Sbjct: 248 PLEPVRDLVSGFEFAPGALGALLSYAELLADESNYGNYRIRKYNLDSYMRLDSAATRALN 307
Query: 303 VLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTA 362
VLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLL+V+ IN+RLD+VQAFVDDT
Sbjct: 308 VLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLEVDAINSRLDLVQAFVDDTG 367
Query: 363 LRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLI 422
LRQDLRQHLKRISDIERLMH +EK RAGL IVKLYQS IRLPYI+ AL++Y+GQFSSLI
Sbjct: 368 LRQDLRQHLKRISDIERLMHIVEKGRAGLHHIVKLYQSIIRLPYIKGALERYDGQFSSLI 427
Query: 423 KERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALKNEQESLER 482
KE+YL+ LE TDD+HLNKFIALVET+VDLDQL+NGEYMIS Y+ L ALK EQESLE
Sbjct: 428 KEKYLESLEVWTDDNHLNKFIALVETAVDLDQLDNGEYMISPGYEAALGALKAEQESLEH 487
Query: 483 QIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDG 542
QIH+LHKQTASDLDLP+DK LKLDKGTQ+GHVFRITKKEEPKIRKKLTTQFIVLETRKDG
Sbjct: 488 QIHNLHKQTASDLDLPLDKGLKLDKGTQYGHVFRITKKEEPKIRKKLTTQFIVLETRKDG 547
Query: 543 VKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSF 602
VKFTNTKLKKLGDQYQK++E YK+ QKELV+RV+Q TFSE+F+ L+ +LSE+DVLLSF
Sbjct: 548 VKFTNTKLKKLGDQYQKIVENYKSRQKELVSRVVQITATFSEVFEKLSGLLSEMDVLLSF 607
Query: 603 ADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIIT 662
ADLASSCPTPYTRPDI P DVGDIILEGSRHPCVEAQDWVNFIPNDCKL+RGKSWFQIIT
Sbjct: 608 ADLASSCPTPYTRPDITPSDVGDIILEGSRHPCVEAQDWVNFIPNDCKLVRGKSWFQIIT 667
Query: 663 GPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQE 722
GPNMGGKSTFIRQ+GVNILMAQVGSF+PCD+A+ISVRDCIFARVGAGDCQ+RGVSTFMQE
Sbjct: 668 GPNMGGKSTFIRQIGVNILMAQVGSFIPCDKATISVRDCIFARVGAGDCQMRGVSTFMQE 727
Query: 723 MLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT 782
MLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLV E++APTLFATHFHELT
Sbjct: 728 MLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVRELKAPTLFATHFHELT 787
Query: 783 ALAHENAN-EFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANF 841
ALAH+ + E + KQ+VGVANYHVSAHIDS++ KLTMLYKVEPGACDQSFGIHVAEFANF
Sbjct: 788 ALAHQKPDQEPHAKQIVGVANYHVSAHIDSSNHKLTMLYKVEPGACDQSFGIHVAEFANF 847
Query: 842 PESVVTLAREKAAELEDFTPSAVISDDAKIEV 873
PESVVTLAREKAAELEDF+P+A+ISDDA+ EV
Sbjct: 848 PESVVTLAREKAAELEDFSPTAIISDDAREEV 879
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356563103|ref|XP_003549805.1| PREDICTED: DNA mismatch repair protein Msh2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1570 bits (4065), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 739/863 (85%), Positives = 813/863 (94%)
Query: 1 MDDEQNKLPELKLDAKQARGFLSFYKTLPNDTRAVRFFDRRDYYTAHGENATFIAKTYYH 60
DD NKLPELKLD+KQA+GFLSF+KTLP+D RAVRFFDRRDYYTAHGENATFIAKTYYH
Sbjct: 5 FDDLNNKLPELKLDSKQAQGFLSFFKTLPDDPRAVRFFDRRDYYTAHGENATFIAKTYYH 64
Query: 61 TTTALRQLGTGSDALSSVSVSKNMFETIARDLLLERTDHTLELYEGSGSNWRLVKSGTPG 120
TTTA+RQLG+GS+ALSSVSVS+NMFETIARDLLLERTDHTLELYEGSGSNWRLVKSGTPG
Sbjct: 65 TTTAMRQLGSGSNALSSVSVSRNMFETIARDLLLERTDHTLELYEGSGSNWRLVKSGTPG 124
Query: 121 NLGSYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTN 180
N+GS+EDVLFAN+EMQD+PV+VAL N+RENGCTIGLG+VDLTKRVLG+AEFLDDSHFTN
Sbjct: 125 NIGSFEDVLFANSEMQDSPVVVALSLNYRENGCTIGLGFVDLTKRVLGMAEFLDDSHFTN 184
Query: 181 VESALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLV 240
VESA VALGCKEC+LP E+ KS+E + L D LT+CGVMLTE+KK+EFKTRDLVQDL RLV
Sbjct: 185 VESAFVALGCKECILPIESGKSTENRMLCDVLTKCGVMLTEKKKSEFKTRDLVQDLGRLV 244
Query: 241 RGSVEPVRDLVSGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAAMRA 300
+G +EPVRDLVSGFE APGALGALLSYAELL+DESNY NY +R Y+LDSYMRLDSAAMRA
Sbjct: 245 KGPIEPVRDLVSGFEFAPGALGALLSYAELLADESNYENYTLRSYNLDSYMRLDSAAMRA 304
Query: 301 LNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDD 360
LNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLH+WLKQPL+DV EIN+RLDIVQAFV+D
Sbjct: 305 LNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHVWLKQPLVDVKEINSRLDIVQAFVED 364
Query: 361 TALRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSS 420
TALRQDLRQHLKRISDIERLMHN++KRRAGLQ IVKLYQSSIRLPYI+SAL++Y+GQFS+
Sbjct: 365 TALRQDLRQHLKRISDIERLMHNIQKRRAGLQHIVKLYQSSIRLPYIKSALERYDGQFST 424
Query: 421 LIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALKNEQESL 480
+++ RYL+P+E TDD+HLNKFI LVE SVDLDQLEN EYMIS SYD+ L+ LK++QE L
Sbjct: 425 MMRSRYLEPIELWTDDEHLNKFIGLVEASVDLDQLENREYMISPSYDSILANLKDQQELL 484
Query: 481 ERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRK 540
E QI +LH+QTA DLDLP+DKALKLDKGTQFGHVFRITKKEEPKIRKKL TQFI+LETRK
Sbjct: 485 ESQIQNLHRQTADDLDLPMDKALKLDKGTQFGHVFRITKKEEPKIRKKLNTQFIILETRK 544
Query: 541 DGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLL 600
DGVKFTNTKLKKLGDQYQ++LEEYK+CQK+LV+RV+QTA TFSE+F+SLA ++SELDVLL
Sbjct: 545 DGVKFTNTKLKKLGDQYQQILEEYKSCQKKLVDRVVQTAATFSEVFESLAEIISELDVLL 604
Query: 601 SFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQI 660
SFADLASSCPTPYTRPDI D GDI LEG RHPCVEAQDWVNFIPNDCKL+RGK+WFQI
Sbjct: 605 SFADLASSCPTPYTRPDITSSDEGDITLEGCRHPCVEAQDWVNFIPNDCKLVRGKTWFQI 664
Query: 661 ITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFM 720
ITGPNMGGKSTFIRQVGVNILMAQVGSFVPCD ASISVRDCIFARVGAGDCQLRGVSTFM
Sbjct: 665 ITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDNASISVRDCIFARVGAGDCQLRGVSTFM 724
Query: 721 QEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHE 780
QEMLETASILKGATD+SLIIIDELGRGTSTYDGFGLAWAICEH+VE I+APTLFATHFHE
Sbjct: 725 QEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHIVEVIKAPTLFATHFHE 784
Query: 781 LTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFAN 840
LTALA EN + + KQ+VGVANYHVSAHIDS++RKLTMLYKVEPGACDQSFGIHVAEFAN
Sbjct: 785 LTALALENVSNDSQKQIVGVANYHVSAHIDSSTRKLTMLYKVEPGACDQSFGIHVAEFAN 844
Query: 841 FPESVVTLAREKAAELEDFTPSA 863
FPESVVTLAREKAAELEDF+PSA
Sbjct: 845 FPESVVTLAREKAAELEDFSPSA 867
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297734165|emb|CBI15412.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1567 bits (4057), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 748/867 (86%), Positives = 824/867 (95%), Gaps = 1/867 (0%)
Query: 4 EQNKLPELKLDAKQARGFLSFYKTLPNDTRAVRFFDRRDYYTAHGENATFIAKTYYHTTT 63
+ +KLPELKLDAKQA+GFLSF+KTLP D RAVRFFDRRDYYTAHGENATFIAKTYYHTTT
Sbjct: 7 DHSKLPELKLDAKQAQGFLSFFKTLPRDPRAVRFFDRRDYYTAHGENATFIAKTYYHTTT 66
Query: 64 ALRQLGTGSDALSSVSVSKNMFETIARDLLLERTDHTLELYEGSGSNWRLVKSGTPGNLG 123
ALRQLG+GSD +SSVSVSKNMFETIAR+LLLERTDHTLELYEGSGSNWRLVKSGTPGNLG
Sbjct: 67 ALRQLGSGSDGISSVSVSKNMFETIARNLLLERTDHTLELYEGSGSNWRLVKSGTPGNLG 126
Query: 124 SYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNVES 183
S+EDVLFANNEMQD+PVIVALFPNFRENGCT+GLG+VDLT+RVLGLAEFLDDS FTNVES
Sbjct: 127 SFEDVLFANNEMQDSPVIVALFPNFRENGCTVGLGFVDLTRRVLGLAEFLDDSQFTNVES 186
Query: 184 ALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVRGS 243
ALVALGC+ECLLP+E+ KSSE +TL DAL+RCGVMLTERK+TEFK RDLVQDL RLV+GS
Sbjct: 187 ALVALGCRECLLPSESAKSSETRTLHDALSRCGVMLTERKRTEFKARDLVQDLGRLVKGS 246
Query: 244 VEPVRDLVSGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAAMRALNV 303
+EPVRDLVSGFE+APGALG LLSYAELL+DESNYGN+ I++Y+LDSYMRLDSAA+RALNV
Sbjct: 247 IEPVRDLVSGFELAPGALGLLLSYAELLADESNYGNFTIQRYNLDSYMRLDSAAVRALNV 306
Query: 304 LESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTAL 363
LESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPL+DVNEIN R D+VQAFV+DTAL
Sbjct: 307 LESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLVDVNEINCRQDLVQAFVEDTAL 366
Query: 364 RQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLIK 423
RQDLRQHLKRISDIERL+ LEKRRA LQ +VKLYQSSIRLPYI+SAL QY+GQFSSLIK
Sbjct: 367 RQDLRQHLKRISDIERLLRTLEKRRASLQHVVKLYQSSIRLPYIKSALGQYDGQFSSLIK 426
Query: 424 ERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALKNEQESLERQ 483
E+YLDPLES TDDDHLN+FI LVE +VDL++LENGEYMISS YD L++LKN+QE+LE Q
Sbjct: 427 EKYLDPLESWTDDDHLNRFIGLVEAAVDLNELENGEYMISSGYDAKLASLKNDQETLELQ 486
Query: 484 IHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGV 543
IH+LHKQTA DLDLP+DK+LKL+KGTQFGHVFRITKKEEPKIRKKLT +FIVLETRKDGV
Sbjct: 487 IHNLHKQTAIDLDLPMDKSLKLEKGTQFGHVFRITKKEEPKIRKKLTAKFIVLETRKDGV 546
Query: 544 KFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFA 603
KFTNTKLKKLGDQYQK+L+EYK+CQ+ELV RV+QTA TFSE+F++LA +LSELDVLLSFA
Sbjct: 547 KFTNTKLKKLGDQYQKILDEYKDCQRELVVRVVQTAATFSEVFENLARLLSELDVLLSFA 606
Query: 604 DLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITG 663
DLA+S PT YTRP+I+P +GDIILEGSRHPCVEAQDWVNFIPNDCKL+R KSWFQIITG
Sbjct: 607 DLATSSPTAYTRPEISPSHMGDIILEGSRHPCVEAQDWVNFIPNDCKLVREKSWFQIITG 666
Query: 664 PNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEM 723
PNMGGKSTFIRQVGVNILMAQVGSFVPCD+A+ISVRDCIFARVGAGDCQLRGVSTFMQEM
Sbjct: 667 PNMGGKSTFIRQVGVNILMAQVGSFVPCDKANISVRDCIFARVGAGDCQLRGVSTFMQEM 726
Query: 724 LETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTA 783
LETASILKGATD+SLIIIDELGRGTSTYDGFGLAWAICEH+VE I+APTLFATHFHELTA
Sbjct: 727 LETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHIVEVIKAPTLFATHFHELTA 786
Query: 784 LAHENAN-EFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFP 842
LAHEN + + KQ+VGVANYHVSAHIDS+SRKLTMLYKVEPGACDQSFGIHVAEFANFP
Sbjct: 787 LAHENTDHQPPEKQIVGVANYHVSAHIDSSSRKLTMLYKVEPGACDQSFGIHVAEFANFP 846
Query: 843 ESVVTLAREKAAELEDFTPSAVISDDA 869
ESVVTLAREKAAELEDF+P+ ++S+DA
Sbjct: 847 ESVVTLAREKAAELEDFSPTEIVSNDA 873
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|350538025|ref|NP_001234067.1| mismatch repair protein [Solanum lycopersicum] gi|296034481|gb|ADG85112.1| mismatch repair protein [Solanum lycopersicum] | Back alignment and taxonomy information |
|---|
Score = 1527 bits (3954), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 709/868 (81%), Positives = 806/868 (92%), Gaps = 1/868 (0%)
Query: 3 DEQNKLPELKLDAKQARGFLSFYKTLPNDTRAVRFFDRRDYYTAHGENATFIAKTYYHTT 62
++Q KLPELKLDA+QA+GFLSF+KTLP D RAVR FDRRDYYTAHG++ATFIAKTYYHTT
Sbjct: 6 EKQGKLPELKLDARQAQGFLSFFKTLPKDVRAVRLFDRRDYYTAHGDDATFIAKTYYHTT 65
Query: 63 TALRQLGTGSDALSSVSVSKNMFETIARDLLLERTDHTLELYEGSGSNWRLVKSGTPGNL 122
TALRQLG G ALSSVSVS+NMFETIARD+LLER D TLELYEGSGSNW+LVKSGTPGN
Sbjct: 66 TALRQLGNGVGALSSVSVSRNMFETIARDILLERMDRTLELYEGSGSNWKLVKSGTPGNF 125
Query: 123 GSYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNVE 182
GS+ED+LFANNEMQD+PVIVAL P F +NGCT+GLGYVD+TKRVLGLAEFLDDSHFTN+E
Sbjct: 126 GSFEDILFANNEMQDSPVIVALAPKFDQNGCTVGLGYVDITKRVLGLAEFLDDSHFTNLE 185
Query: 183 SALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVRG 242
SALVALGC+ECL+PTE KSSE + L DA++RCGVM+TERKKTEFK RDLVQDL RLV+G
Sbjct: 186 SALVALGCRECLVPTETGKSSESRPLYDAISRCGVMVTERKKTEFKGRDLVQDLGRLVKG 245
Query: 243 SVEPVRDLVSGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAAMRALN 302
SVEPVRDLVS FE A GALG +LSYAELL+D+SNYGNY +++Y+LDSYMRLDSAAMRALN
Sbjct: 246 SVEPVRDLVSSFECAAGALGCILSYAELLADDSNYGNYTVKQYNLDSYMRLDSAAMRALN 305
Query: 303 VLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTA 362
V+ESK+DANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDV+EIN RLD+VQAFV+D A
Sbjct: 306 VMESKSDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVDEINCRLDLVQAFVEDAA 365
Query: 363 LRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLI 422
LRQDLRQHLKRISDIERL HNLE++RA L +VKLYQS IR+PYI+S L++Y+GQF+ LI
Sbjct: 366 LRQDLRQHLKRISDIERLTHNLERKRASLLHVVKLYQSGIRIPYIKSVLERYDGQFAPLI 425
Query: 423 KERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALKNEQESLER 482
+ERY+D LE +DD+HLNKFIALVET+VDLDQLENGEYMISS+YD LSALK+EQE+LE+
Sbjct: 426 RERYIDSLEKWSDDNHLNKFIALVETAVDLDQLENGEYMISSAYDPNLSALKDEQETLEQ 485
Query: 483 QIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDG 542
QIH+LHKQTA+DLDLP+DK+LKLDKGTQFGHVFRITKKEEPK+R++L + +IVLETRKDG
Sbjct: 486 QIHNLHKQTANDLDLPIDKSLKLDKGTQFGHVFRITKKEEPKVRRQLNSHYIVLETRKDG 545
Query: 543 VKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSF 602
VKFTNTKLKKLGD+YQK+L+EYK+CQKELV RV+QT +FSE+F+ LA LSELDVLLSF
Sbjct: 546 VKFTNTKLKKLGDRYQKILDEYKSCQKELVARVVQTVASFSEVFEGLAGSLSELDVLLSF 605
Query: 603 ADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIIT 662
ADLASSCPT Y+RP+I+PPD GDIILEG RHPCVEAQDWVNFIPNDC+L+RG+SWFQIIT
Sbjct: 606 ADLASSCPTAYSRPNISPPDTGDIILEGCRHPCVEAQDWVNFIPNDCRLVRGESWFQIIT 665
Query: 663 GPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQE 722
GPNMGGKST+IRQVGVN+LMAQVGSFVPCD A+IS+RDCIFARVGAGDCQL+GVSTFMQE
Sbjct: 666 GPNMGGKSTYIRQVGVNVLMAQVGSFVPCDNATISIRDCIFARVGAGDCQLKGVSTFMQE 725
Query: 723 MLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT 782
MLETASILKGAT+RSL+IIDELGRGTSTYDGFGLAWAICEH+VEEI+APTLFATHFHELT
Sbjct: 726 MLETASILKGATNRSLVIIDELGRGTSTYDGFGLAWAICEHIVEEIKAPTLFATHFHELT 785
Query: 783 ALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFP 842
ALA+EN N KQ+ VAN+HVSAHIDS+SRKLTMLYKV+PGACDQSFGIHVAEFANFP
Sbjct: 786 ALANENGNN-GHKQISSVANFHVSAHIDSSSRKLTMLYKVQPGACDQSFGIHVAEFANFP 844
Query: 843 ESVVTLAREKAAELEDFTPSAVISDDAK 870
+SVV LAREKA+ELEDF+P A++ +D K
Sbjct: 845 QSVVALAREKASELEDFSPRAMMPNDCK 872
|
Source: Solanum lycopersicum Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|49615724|gb|AAT67044.1| DNA mismatch repair protein [Petunia x hybrida] | Back alignment and taxonomy information |
|---|
Score = 1519 bits (3933), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 707/868 (81%), Positives = 804/868 (92%), Gaps = 1/868 (0%)
Query: 3 DEQNKLPELKLDAKQARGFLSFYKTLPNDTRAVRFFDRRDYYTAHGENATFIAKTYYHTT 62
+EQ KLPELKLDA+QA+GFLSF+KTLP DTRAVR FDRRDYYTAHG++A+FIAKTYYHTT
Sbjct: 6 EEQAKLPELKLDARQAQGFLSFFKTLPKDTRAVRLFDRRDYYTAHGDDASFIAKTYYHTT 65
Query: 63 TALRQLGTGSDALSSVSVSKNMFETIARDLLLERTDHTLELYEGSGSNWRLVKSGTPGNL 122
+ALRQLG G+DALSSV+VS+NMFETIARD+LLER D TLELYEGSGSNWRLVK+GTPG L
Sbjct: 66 SALRQLGNGADALSSVTVSRNMFETIARDILLERMDRTLELYEGSGSNWRLVKNGTPGVL 125
Query: 123 GSYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNVE 182
GS+ED+LFANNEMQD+PVIVAL PN +NGCTIGLGYVD+TKR+LGLAEFLDDSHFTN+E
Sbjct: 126 GSFEDILFANNEMQDSPVIVALAPNSSQNGCTIGLGYVDITKRILGLAEFLDDSHFTNLE 185
Query: 183 SALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVRG 242
SALVALGC+ECL+P E KSSE + L DA++RCGVM+TERKK EFK RDLVQDL RLV+G
Sbjct: 186 SALVALGCRECLVPAETGKSSEYRPLYDAISRCGVMVTERKKAEFKGRDLVQDLGRLVKG 245
Query: 243 SVEPVRDLVSGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAAMRALN 302
S EPVRDLVSGFE A GALG +LSYAELL+DESNYGNY +++Y+L SYMRLDSAAMRALN
Sbjct: 246 STEPVRDLVSGFECAAGALGCILSYAELLADESNYGNYIVKQYNLSSYMRLDSAAMRALN 305
Query: 303 VLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTA 362
V+ESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDV++IN RLD+VQAFV+D A
Sbjct: 306 VMESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVDKINCRLDLVQAFVEDAA 365
Query: 363 LRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLI 422
LRQDLRQHLKRI+DIERL NLE++RA L +VKLYQSSIRLPYI+S L +Y+GQF++LI
Sbjct: 366 LRQDLRQHLKRIADIERLTRNLERKRASLVHVVKLYQSSIRLPYIKSVLARYDGQFATLI 425
Query: 423 KERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALKNEQESLER 482
+E+Y+DPLE+L+DD+HLNKFI LVETS+DLDQLE+GEYMISS+YD LSALK+EQE+LER
Sbjct: 426 REKYIDPLENLSDDNHLNKFIGLVETSIDLDQLESGEYMISSAYDPNLSALKDEQETLER 485
Query: 483 QIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDG 542
IH+LHKQTA+DLDLPVDK+LKLDK T FGHVFRITKKEEPKIRK+L + +I+LETRKDG
Sbjct: 486 HIHNLHKQTANDLDLPVDKSLKLDKETTFGHVFRITKKEEPKIRKQLNSHYIILETRKDG 545
Query: 543 VKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSF 602
VKFTNTKLKKLGDQYQK++EEYK+CQKELV RV+QTA +FSE+F+ +A LSELDVLLS
Sbjct: 546 VKFTNTKLKKLGDQYQKIVEEYKSCQKELVARVVQTAASFSEVFEGIAGSLSELDVLLSL 605
Query: 603 ADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIIT 662
ADLA+SCPTPYTRP+I PPD GDIILEG RHPCVEAQDWVNFIPNDC+L+RG+SWFQIIT
Sbjct: 606 ADLAASCPTPYTRPNITPPDTGDIILEGCRHPCVEAQDWVNFIPNDCRLVRGESWFQIIT 665
Query: 663 GPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQE 722
GPNMGGKST+IRQVGVNILMAQVGSFVPC+ ASIS+RDCIFARVGAGDCQLRGVSTFMQE
Sbjct: 666 GPNMGGKSTYIRQVGVNILMAQVGSFVPCNNASISIRDCIFARVGAGDCQLRGVSTFMQE 725
Query: 723 MLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT 782
MLETASILKGATD+SLIIIDELGRGTSTYDGFGLAWAICEH+VE I+APTLFATHFHELT
Sbjct: 726 MLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHIVEVIKAPTLFATHFHELT 785
Query: 783 ALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFP 842
ALA+ N + KQ+ GVAN+HVSAHID++SRKLTMLYKV+PGACDQSFGIHVAEFANFP
Sbjct: 786 ALANANGDN-GHKQIAGVANFHVSAHIDASSRKLTMLYKVQPGACDQSFGIHVAEFANFP 844
Query: 843 ESVVTLAREKAAELEDFTPSAVISDDAK 870
SVV LAREKA+ELEDF+P+A+I +D +
Sbjct: 845 RSVVDLAREKASELEDFSPNAMILNDGE 872
|
Source: Petunia x hybrida Species: Petunia x hybrida Genus: Petunia Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359491419|ref|XP_002275304.2| PREDICTED: DNA mismatch repair protein Msh2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1502 bits (3888), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 718/833 (86%), Positives = 791/833 (94%), Gaps = 1/833 (0%)
Query: 42 DYYTAHGENATFIAKTYYHTTTALRQLGTGSDALSSVSVSKNMFETIARDLLLERTDHTL 101
DYYTAHGENATFIAKTYYHTTTALRQLG+GSD +SSVSVSKNMFETIAR+LLLERTDHTL
Sbjct: 5 DYYTAHGENATFIAKTYYHTTTALRQLGSGSDGISSVSVSKNMFETIARNLLLERTDHTL 64
Query: 102 ELYEGSGSNWRLVKSGTPGNLGSYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVD 161
ELYEGSGSNWRLVKSGTPGNLGS+EDVLFANNEMQD+PVIVALFPNFRENGCT+GLG+VD
Sbjct: 65 ELYEGSGSNWRLVKSGTPGNLGSFEDVLFANNEMQDSPVIVALFPNFRENGCTVGLGFVD 124
Query: 162 LTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTE 221
LT+RVLGLAEFLDDS FTNVESALVALGC+ECLLP+E+ KSSE +TL DAL+RCGVMLTE
Sbjct: 125 LTRRVLGLAEFLDDSQFTNVESALVALGCRECLLPSESAKSSETRTLHDALSRCGVMLTE 184
Query: 222 RKKTEFKTRDLVQDLDRLVRGSVEPVRDLVSGFEIAPGALGALLSYAELLSDESNYGNYY 281
RK+TEFK RDLVQDL RLV+GS+EPVRDLVSGFE+APGALG LLSYAELL+DESNYGN+
Sbjct: 185 RKRTEFKARDLVQDLGRLVKGSIEPVRDLVSGFELAPGALGLLLSYAELLADESNYGNFT 244
Query: 282 IRKYSLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPL 341
I++Y+LDSYMRLDSAA+RALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPL
Sbjct: 245 IQRYNLDSYMRLDSAAVRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPL 304
Query: 342 LDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSS 401
+DVNEIN R D+VQAFV+DTALRQDLRQHLKRISDIERL+ LEKRRA LQ +VKLYQSS
Sbjct: 305 VDVNEINCRQDLVQAFVEDTALRQDLRQHLKRISDIERLLRTLEKRRASLQHVVKLYQSS 364
Query: 402 IRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYM 461
IRLPYI+SAL QY+GQFSSLIKE+YLDPLES TDDDHLN+FI LVE +VDL++LENGEYM
Sbjct: 365 IRLPYIKSALGQYDGQFSSLIKEKYLDPLESWTDDDHLNRFIGLVEAAVDLNELENGEYM 424
Query: 462 ISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKE 521
ISS YD L++LKN+QE+LE QIH+LHKQTA DLDLP+DK+LKL+KGTQFGHVFRITKKE
Sbjct: 425 ISSGYDAKLASLKNDQETLELQIHNLHKQTAIDLDLPMDKSLKLEKGTQFGHVFRITKKE 484
Query: 522 EPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVT 581
EPKIRKKLT +FIVLETRKDGVKFTNTKLKKLGDQYQK+L+EYK+CQ+ELV RV+QTA T
Sbjct: 485 EPKIRKKLTAKFIVLETRKDGVKFTNTKLKKLGDQYQKILDEYKDCQRELVVRVVQTAAT 544
Query: 582 FSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDW 641
FSE+F++LA +LSELDVLLSFADLA+S PT YTRP+I+P +GDIILEGSRHPCVEAQDW
Sbjct: 545 FSEVFENLARLLSELDVLLSFADLATSSPTAYTRPEISPSHMGDIILEGSRHPCVEAQDW 604
Query: 642 VNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDC 701
VNFIPNDCKL+R KSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCD+A+ISVRDC
Sbjct: 605 VNFIPNDCKLVREKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDKANISVRDC 664
Query: 702 IFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAIC 761
IFARVGAGDCQLRGVSTFMQEMLETASILKGATD+SLIIIDELGRGTSTYDGFGLAWAIC
Sbjct: 665 IFARVGAGDCQLRGVSTFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAIC 724
Query: 762 EHLVEEIRAPTLFATHFHELTALAHENAN-EFNTKQMVGVANYHVSAHIDSTSRKLTMLY 820
EH+VE I+APTLFATHFHELTALAHEN + + KQ+VGVANYHVSAHIDS+SRKLTMLY
Sbjct: 725 EHIVEVIKAPTLFATHFHELTALAHENTDHQPPEKQIVGVANYHVSAHIDSSSRKLTMLY 784
Query: 821 KVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFTPSAVISDDAKIEV 873
KVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDF+P+ ++S+DA +V
Sbjct: 785 KVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFSPTEIVSNDASDKV 837
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449440909|ref|XP_004138226.1| PREDICTED: DNA mismatch repair protein MSH2-like [Cucumis sativus] gi|449477104|ref|XP_004154930.1| PREDICTED: DNA mismatch repair protein MSH2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1501 bits (3887), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 725/859 (84%), Positives = 799/859 (93%), Gaps = 1/859 (0%)
Query: 3 DEQNKLPELKLDAKQARGFLSFYKTLPNDTRAVRFFDRRDYYTAHGENATFIAKTYYHTT 62
DEQ KLPELKLDAKQA+GFL+F+KTLP D+RAVRFFDRRDYYTAH +NA FIAKTYY TT
Sbjct: 6 DEQTKLPELKLDAKQAQGFLAFFKTLPPDSRAVRFFDRRDYYTAHSDNAVFIAKTYYRTT 65
Query: 63 TALRQLGTGSDALSSVSVSKNMFETIARDLLLERTDHTLELYEGSGSNWRLVKSGTPGNL 122
TALRQLG S+ALSSVSVSKNMFE+IARDLLLERTDHTLELYEGSGSNWRL+KSG+PGN+
Sbjct: 66 TALRQLGNASEALSSVSVSKNMFESIARDLLLERTDHTLELYEGSGSNWRLIKSGSPGNI 125
Query: 123 GSYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNVE 182
GS+EDVLFANNEMQD+P IVALFP FR+NGC +GLGYVDLTKRV+G+AEF+DDSHFTNVE
Sbjct: 126 GSFEDVLFANNEMQDSPAIVALFPYFRDNGCIVGLGYVDLTKRVMGMAEFIDDSHFTNVE 185
Query: 183 SALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVRG 242
SALV +GCKECLLP E+ KS + K L D LT+CGVMLTERKK+EFK RDLVQDL RL++G
Sbjct: 186 SALVGIGCKECLLPLESGKSGDIKPLHDVLTKCGVMLTERKKSEFKMRDLVQDLSRLIKG 245
Query: 243 SVEPVRDLVSGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAAMRALN 302
SVEPVRDLVSGFE AP ALGALL+YAELL+DESNYGNY I+KY+LDSYMRLDSAA+RALN
Sbjct: 246 SVEPVRDLVSGFEFAPAALGALLAYAELLADESNYGNYNIQKYNLDSYMRLDSAAIRALN 305
Query: 303 VLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTA 362
VLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDV EI++RLD+VQAFV+DTA
Sbjct: 306 VLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVKEISSRLDLVQAFVEDTA 365
Query: 363 LRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLI 422
L QDLRQHLKRISDIERL H LEKRRAGLQ IVKLYQSSIRLP+I++AL+ YEGQFSSLI
Sbjct: 366 LCQDLRQHLKRISDIERLTHYLEKRRAGLQHIVKLYQSSIRLPFIKNALENYEGQFSSLI 425
Query: 423 KERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALKNEQESLER 482
KE+YL+ LE+ TD+DHLNKF LVET+VDLDQLENGEYMI+SSYD LS LKN QES+E+
Sbjct: 426 KEKYLEFLETCTDNDHLNKFNNLVETAVDLDQLENGEYMIASSYDDTLSKLKNVQESIEQ 485
Query: 483 QIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDG 542
QI LH+Q A+DLDLPVDKALKLDKGTQFGHVFRITKKEEPK+RKKL+T FIVLETRKDG
Sbjct: 486 QIQDLHRQVANDLDLPVDKALKLDKGTQFGHVFRITKKEEPKVRKKLSTHFIVLETRKDG 545
Query: 543 VKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSF 602
VKFTNTKLKKLGDQYQK++EEYK+CQK+LV+RVI+TA +F+E+F+ LA +LSELDVLL F
Sbjct: 546 VKFTNTKLKKLGDQYQKIVEEYKSCQKDLVHRVIETASSFNEVFRPLAELLSELDVLLGF 605
Query: 603 ADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIIT 662
ADLASSCPTPYTRPDI + G+IILEGSRHPCVEAQDWVNFIPNDCKL+RGKSWFQIIT
Sbjct: 606 ADLASSCPTPYTRPDITSSNEGNIILEGSRHPCVEAQDWVNFIPNDCKLVRGKSWFQIIT 665
Query: 663 GPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQE 722
GPNMGGKSTFIRQVGVNILMAQVG FVPCD+ASISVRDCIFARVGAGDCQLRGVSTFMQE
Sbjct: 666 GPNMGGKSTFIRQVGVNILMAQVGCFVPCDKASISVRDCIFARVGAGDCQLRGVSTFMQE 725
Query: 723 MLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT 782
MLETASILKGAT++SLIIIDELGRGTSTYDGFGLAWAICEHLVE I+APTLFATHFHELT
Sbjct: 726 MLETASILKGATEKSLIIIDELGRGTSTYDGFGLAWAICEHLVEVIKAPTLFATHFHELT 785
Query: 783 ALAHENAN-EFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANF 841
ALAH N + + + KQM GVAN+HVSAHIDS++ KLTMLYKVEPGACDQSFGIHVAEFANF
Sbjct: 786 ALAHGNTDLDSHGKQMAGVANFHVSAHIDSSNHKLTMLYKVEPGACDQSFGIHVAEFANF 845
Query: 842 PESVVTLAREKAAELEDFT 860
P SVV LAREKAAELEDF+
Sbjct: 846 PSSVVALAREKAAELEDFS 864
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42565226|ref|NP_566804.3| DNA mismatch repair protein Msh2 [Arabidopsis thaliana] gi|3914056|sp|O24617.1|MSH2_ARATH RecName: Full=DNA mismatch repair protein MSH2; Short=AtMSH2; AltName: Full=MutS protein homolog 2 gi|2522362|gb|AAB82649.1| MutS homolog 2 [Arabidopsis thaliana] gi|2522364|gb|AAB82650.1| MutS homolog 2 [Arabidopsis thaliana] gi|2547236|gb|AAB81282.1| DNA mismatch repair protein MSH2 [Arabidopsis thaliana] gi|11994116|dbj|BAB01119.1| DNA mismatch repair protein MSH2 [Arabidopsis thaliana] gi|332642591|gb|AEE76112.1| DNA mismatch repair protein Msh2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1463 bits (3787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 690/863 (79%), Positives = 789/863 (91%), Gaps = 2/863 (0%)
Query: 3 DEQNKLPELKLDAKQARGFLSFYKTLPNDTRAVRFFDRRDYYTAHGENATFIAKTYYHTT 62
+EQNKLPELKLDAKQA+GFLSFYKTLPNDTRAVRFFDR+DYYTAHGEN+ FIAKTYYHTT
Sbjct: 6 EEQNKLPELKLDAKQAQGFLSFYKTLPNDTRAVRFFDRKDYYTAHGENSVFIAKTYYHTT 65
Query: 63 TALRQLGTGSDALSSVSVSKNMFETIARDLLLERTDHTLELYEGSGSNWRLVKSGTPGNL 122
TALRQLG+GS+ALSSVS+S+NMFETIARDLLLER DHT+ELYEGSGSNWRLVK+G+PGN+
Sbjct: 66 TALRQLGSGSNALSSVSISRNMFETIARDLLLERNDHTVELYEGSGSNWRLVKTGSPGNI 125
Query: 123 GSYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNVE 182
GS+EDVLFANNEMQDTPV+V++FP+F + C IG+ YVDLT+RVLGLAEFLDDS FTN+E
Sbjct: 126 GSFEDVLFANNEMQDTPVVVSIFPSFHDGRCVIGMAYVDLTRRVLGLAEFLDDSRFTNLE 185
Query: 183 SALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVRG 242
S+L+ALG KEC+ P E+ KS+ECK+L D+L RC VM+TERKK EFK RDL DL RLV+G
Sbjct: 186 SSLIALGAKECIFPAESGKSNECKSLYDSLERCAVMITERKKHEFKGRDLDSDLKRLVKG 245
Query: 243 SVEPVRDLVSGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAAMRALN 302
++EPVRDLVSGF++A ALGALLS++ELLS+E NYGN+ IR+Y + +MRLDSAAMRALN
Sbjct: 246 NIEPVRDLVSGFDLATPALGALLSFSELLSNEDNYGNFTIRRYDIGGFMRLDSAAMRALN 305
Query: 303 VLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTA 362
V+ESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPL+D+NEI RLDIVQ FV++
Sbjct: 306 VMESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLVDLNEIKTRLDIVQCFVEEAG 365
Query: 363 LRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLI 422
LRQDLRQHLKRISD+ERL+ +LE+RR GLQ I+KLYQS+IRLP+I++A+QQY G+F+SLI
Sbjct: 366 LRQDLRQHLKRISDVERLLRSLERRRGGLQHIIKLYQSTIRLPFIKTAMQQYTGEFASLI 425
Query: 423 KERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALKNEQESLER 482
ERYL LE+L+D DHL KFI LVE SVDLDQLENGEYMISSSYDT L++LK+++E LE+
Sbjct: 426 SERYLKKLEALSDQDHLGKFIDLVECSVDLDQLENGEYMISSSYDTKLASLKDQKELLEQ 485
Query: 483 QIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDG 542
QIH LHK+TA +LDL VDKALKLDK QFGHVFRITKKEEPKIRKKLTTQFIVLETRKDG
Sbjct: 486 QIHELHKKTAIELDLQVDKALKLDKAAQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDG 545
Query: 543 VKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSF 602
VKFTNTKLKKLGDQYQ V+++Y++CQKELV+RV++T +FSE+F+ LA +LSE+DVLLSF
Sbjct: 546 VKFTNTKLKKLGDQYQSVVDDYRSCQKELVDRVVETVTSFSEVFEDLAGLLSEMDVLLSF 605
Query: 603 ADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIIT 662
ADLA+SCPTPY RP+I D GDI+LEGSRHPCVEAQDWVNFIPNDC+L+RGKSWFQI+T
Sbjct: 606 ADLAASCPTPYCRPEITSSDAGDIVLEGSRHPCVEAQDWVNFIPNDCRLMRGKSWFQIVT 665
Query: 663 GPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQE 722
GPNMGGKSTFIRQVGV +LMAQVGSFVPCD+ASIS+RDCIFARVGAGDCQLRGVSTFMQE
Sbjct: 666 GPNMGGKSTFIRQVGVIVLMAQVGSFVPCDKASISIRDCIFARVGAGDCQLRGVSTFMQE 725
Query: 723 MLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT 782
MLETASILKGA+D+SLIIIDELGRGTSTYDGFGLAWAICEHLV+ RAPTLFATHFHELT
Sbjct: 726 MLETASILKGASDKSLIIIDELGRGTSTYDGFGLAWAICEHLVQVKRAPTLFATHFHELT 785
Query: 783 ALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFP 842
ALA AN + VGVAN+HVSAHID+ SRKLTMLYKVEPGACDQSFGIHVAEFANFP
Sbjct: 786 ALAQ--ANSEVSGNTVGVANFHVSAHIDTESRKLTMLYKVEPGACDQSFGIHVAEFANFP 843
Query: 843 ESVVTLAREKAAELEDFTPSAVI 865
ESVV LAREKAAELEDF+PS++I
Sbjct: 844 ESVVALAREKAAELEDFSPSSMI 866
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|4139230|gb|AAD04176.1| mismatch repair protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1462 bits (3785), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 690/863 (79%), Positives = 789/863 (91%), Gaps = 2/863 (0%)
Query: 3 DEQNKLPELKLDAKQARGFLSFYKTLPNDTRAVRFFDRRDYYTAHGENATFIAKTYYHTT 62
+EQNKLPELKLDAKQA+GFLSFYKTLPNDTRAVRFFDR+DYYTAHGEN+ FIAKTYYHTT
Sbjct: 6 EEQNKLPELKLDAKQAQGFLSFYKTLPNDTRAVRFFDRKDYYTAHGENSVFIAKTYYHTT 65
Query: 63 TALRQLGTGSDALSSVSVSKNMFETIARDLLLERTDHTLELYEGSGSNWRLVKSGTPGNL 122
TALRQLG+GS+ALSSVS+S+NMFETIARDLLLER DHT+ELYEGSGSNWRLVK+G+PGN+
Sbjct: 66 TALRQLGSGSNALSSVSISRNMFETIARDLLLERNDHTVELYEGSGSNWRLVKTGSPGNI 125
Query: 123 GSYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNVE 182
GS+EDVLFANNEMQDTPV+V++FP+F + C IG+ YVDLT+RVLGLAEFLDDS FTN+E
Sbjct: 126 GSFEDVLFANNEMQDTPVVVSIFPSFHDGRCVIGMAYVDLTRRVLGLAEFLDDSRFTNLE 185
Query: 183 SALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVRG 242
S+L+ALG KEC+ P E+ KS+ECK+L D+L RC VM+TERKK EFK RDL DL RLV+G
Sbjct: 186 SSLIALGAKECIFPAESGKSNECKSLYDSLERCAVMITERKKHEFKGRDLDSDLKRLVKG 245
Query: 243 SVEPVRDLVSGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAAMRALN 302
++EPVRDLVSGF++A ALGALLS++ELLS+E NYGN+ IR+Y + +MRLDSAAMRALN
Sbjct: 246 NIEPVRDLVSGFDLATPALGALLSFSELLSNEDNYGNFTIRRYDIGGFMRLDSAAMRALN 305
Query: 303 VLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTA 362
V+ESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPL+D+NEI RLDIVQ FV++
Sbjct: 306 VMESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLVDLNEIKTRLDIVQCFVEEAG 365
Query: 363 LRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLI 422
LRQDLRQHLKRISD+ERL+ +LE+RR GLQ I+KLYQS+IRLP+I++A+QQY G+F+SLI
Sbjct: 366 LRQDLRQHLKRISDVERLLRSLERRRGGLQHIIKLYQSAIRLPFIKTAMQQYTGEFASLI 425
Query: 423 KERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALKNEQESLER 482
ERYL LE+L+D DHL KFI LVE SVDLDQLENGEYMISS+YDT L++LK+++E LE+
Sbjct: 426 SERYLKKLEALSDQDHLGKFIDLVECSVDLDQLENGEYMISSNYDTKLASLKDQKELLEQ 485
Query: 483 QIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDG 542
QIH LHK+TA +LDL VDKALKLDK QFGHVFRITKKEEPKIRKKLTTQFIVLETRKDG
Sbjct: 486 QIHELHKKTAIELDLQVDKALKLDKAAQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDG 545
Query: 543 VKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSF 602
VKFTNTKLKKLGDQYQ V+++Y++CQKELV+RV++T +FSE+F+ LA +LSE+DVLLSF
Sbjct: 546 VKFTNTKLKKLGDQYQSVVDDYRSCQKELVDRVVETVTSFSEVFEDLAGLLSEMDVLLSF 605
Query: 603 ADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIIT 662
ADLA+SCPTPY RP+I D GDI+LEGSRHPCVEAQDWVNFIPNDC+L+RGKSWFQI+T
Sbjct: 606 ADLAASCPTPYCRPEITSLDAGDIVLEGSRHPCVEAQDWVNFIPNDCRLMRGKSWFQIVT 665
Query: 663 GPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQE 722
GPNMGGKSTFIRQVGV +LMAQVGSFVPCD+ASIS+RDCIFARVGAGDCQLRGVSTFMQE
Sbjct: 666 GPNMGGKSTFIRQVGVIVLMAQVGSFVPCDKASISIRDCIFARVGAGDCQLRGVSTFMQE 725
Query: 723 MLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT 782
MLETASILKGATD+SLIIIDELGRGTSTYDGFGLAWAICEHLV+ RAPTLFATHFHELT
Sbjct: 726 MLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHLVQVKRAPTLFATHFHELT 785
Query: 783 ALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFP 842
ALA AN + VGVAN+HVSAHID+ SRKLTMLYKVEPGACDQSFGIHVAEFANFP
Sbjct: 786 ALAQ--ANSEVSGNTVGVANFHVSAHIDTESRKLTMLYKVEPGACDQSFGIHVAEFANFP 843
Query: 843 ESVVTLAREKAAELEDFTPSAVI 865
ESVV LAREKAAELEDF+PS++I
Sbjct: 844 ESVVALAREKAAELEDFSPSSMI 866
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 888 | ||||||
| TAIR|locus:2095097 | 937 | MSH2 "AT3G18524" [Arabidopsis | 0.968 | 0.917 | 0.799 | 0.0 | |
| UNIPROTKB|Q3MHE4 | 934 | MSH2 "DNA mismatch repair prot | 0.935 | 0.889 | 0.451 | 1.4e-190 | |
| UNIPROTKB|F1PM37 | 934 | MSH2 "Uncharacterized protein" | 0.935 | 0.889 | 0.453 | 3.7e-190 | |
| ZFIN|ZDB-GENE-040426-2932 | 936 | msh2 "mutS homolog 2 (E. coli) | 0.945 | 0.897 | 0.438 | 6e-190 | |
| UNIPROTKB|E9PHA6 | 921 | MSH2 "DNA mismatch repair prot | 0.935 | 0.902 | 0.449 | 7.7e-190 | |
| UNIPROTKB|P43246 | 934 | MSH2 "DNA mismatch repair prot | 0.935 | 0.889 | 0.449 | 7.7e-190 | |
| MGI|MGI:101816 | 935 | Msh2 "mutS homolog 2 (E. coli) | 0.935 | 0.888 | 0.444 | 3.3e-189 | |
| RGD|620786 | 933 | Msh2 "mutS homolog 2 (E. coli) | 0.935 | 0.890 | 0.436 | 6.6e-184 | |
| UNIPROTKB|F1NFH4 | 866 | MSH2 "Uncharacterized protein" | 0.871 | 0.893 | 0.460 | 4.7e-183 | |
| UNIPROTKB|F1NV33 | 861 | MSH2 "Uncharacterized protein" | 0.863 | 0.890 | 0.462 | 4.2e-182 |
| TAIR|locus:2095097 MSH2 "AT3G18524" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3664 (1294.9 bits), Expect = 0., P = 0.
Identities = 691/864 (79%), Positives = 790/864 (91%)
Query: 3 DEQNKLPELKLDAKQARGFLSFYKTLPNDTRAVRFFDRRDYYTAHGENATFIAKTYYHTT 62
+EQNKLPELKLDAKQA+GFLSFYKTLPNDTRAVRFFDR+DYYTAHGEN+ FIAKTYYHTT
Sbjct: 6 EEQNKLPELKLDAKQAQGFLSFYKTLPNDTRAVRFFDRKDYYTAHGENSVFIAKTYYHTT 65
Query: 63 TALRQLGTGSDALSSVSVSKNMFETIARDLLLERTDHTLELYEGSGSNWRLVKSGTPGNL 122
TALRQLG+GS+ALSSVS+S+NMFETIARDLLLER DHT+ELYEGSGSNWRLVK+G+PGN+
Sbjct: 66 TALRQLGSGSNALSSVSISRNMFETIARDLLLERNDHTVELYEGSGSNWRLVKTGSPGNI 125
Query: 123 GSYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNVE 182
GS+EDVLFANNEMQDTPV+V++FP+F + C IG+ YVDLT+RVLGLAEFLDDS FTN+E
Sbjct: 126 GSFEDVLFANNEMQDTPVVVSIFPSFHDGRCVIGMAYVDLTRRVLGLAEFLDDSRFTNLE 185
Query: 183 SALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVRG 242
S+L+ALG KEC+ P E+ KS+ECK+L D+L RC VM+TERKK EFK RDL DL RLV+G
Sbjct: 186 SSLIALGAKECIFPAESGKSNECKSLYDSLERCAVMITERKKHEFKGRDLDSDLKRLVKG 245
Query: 243 SVEPVRDLVSGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAAMRALN 302
++EPVRDLVSGF++A ALGALLS++ELLS+E NYGN+ IR+Y + +MRLDSAAMRALN
Sbjct: 246 NIEPVRDLVSGFDLATPALGALLSFSELLSNEDNYGNFTIRRYDIGGFMRLDSAAMRALN 305
Query: 303 VLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTA 362
V+ESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPL+D+NEI RLDIVQ FV++
Sbjct: 306 VMESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLVDLNEIKTRLDIVQCFVEEAG 365
Query: 363 LRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLI 422
LRQDLRQHLKRISD+ERL+ +LE+RR GLQ I+KLYQS+IRLP+I++A+QQY G+F+SLI
Sbjct: 366 LRQDLRQHLKRISDVERLLRSLERRRGGLQHIIKLYQSTIRLPFIKTAMQQYTGEFASLI 425
Query: 423 KERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALKNEQESLER 482
ERYL LE+L+D DHL KFI LVE SVDLDQLENGEYMISSSYDT L++LK+++E LE+
Sbjct: 426 SERYLKKLEALSDQDHLGKFIDLVECSVDLDQLENGEYMISSSYDTKLASLKDQKELLEQ 485
Query: 483 QIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDG 542
QIH LHK+TA +LDL VDKALKLDK QFGHVFRITKKEEPKIRKKLTTQFIVLETRKDG
Sbjct: 486 QIHELHKKTAIELDLQVDKALKLDKAAQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDG 545
Query: 543 VKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSF 602
VKFTNTKLKKLGDQYQ V+++Y++CQKELV+RV++T +FSE+F+ LA +LSE+DVLLSF
Sbjct: 546 VKFTNTKLKKLGDQYQSVVDDYRSCQKELVDRVVETVTSFSEVFEDLAGLLSEMDVLLSF 605
Query: 603 ADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIIT 662
ADLA+SCPTPY RP+I D GDI+LEGSRHPCVEAQDWVNFIPNDC+L+RGKSWFQI+T
Sbjct: 606 ADLAASCPTPYCRPEITSSDAGDIVLEGSRHPCVEAQDWVNFIPNDCRLMRGKSWFQIVT 665
Query: 663 GPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQE 722
GPNMGGKSTFIRQVGV +LMAQVGSFVPCD+ASIS+RDCIFARVGAGDCQLRGVSTFMQE
Sbjct: 666 GPNMGGKSTFIRQVGVIVLMAQVGSFVPCDKASISIRDCIFARVGAGDCQLRGVSTFMQE 725
Query: 723 MLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT 782
MLETASILKGA+D+SLIIIDELGRGTSTYDGFGLAWAICEHLV+ RAPTLFATHFHELT
Sbjct: 726 MLETASILKGASDKSLIIIDELGRGTSTYDGFGLAWAICEHLVQVKRAPTLFATHFHELT 785
Query: 783 ALAHENAN-EFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANF 841
ALA N+ NT VGVAN+HVSAHID+ SRKLTMLYKVEPGACDQSFGIHVAEFANF
Sbjct: 786 ALAQANSEVSGNT---VGVANFHVSAHIDTESRKLTMLYKVEPGACDQSFGIHVAEFANF 842
Query: 842 PESVVTLAREKAAELEDFTPSAVI 865
PESVV LAREKAAELEDF+PS++I
Sbjct: 843 PESVVALAREKAAELEDFSPSSMI 866
|
|
| UNIPROTKB|Q3MHE4 MSH2 "DNA mismatch repair protein Msh2" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1847 (655.2 bits), Expect = 1.4e-190, P = 1.4e-190
Identities = 390/864 (45%), Positives = 553/864 (64%)
Query: 11 LKLDAKQARGFLSFYKTLPND-TRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLG 69
L+LD+ GF+ F++ +P T VR FDR D+YTAH E+A A+ + T ++ +G
Sbjct: 9 LQLDSAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHREDALLAAREVFKTQGVVKYMG 68
Query: 70 -TGSDALSSVSVSKNMFETIARDLLLERTDHTLELYEGSGSN-------WRLVKSGTPGN 121
G+ L SV +SK FE+ +DLLL R + +E+Y+ N W L +PGN
Sbjct: 69 PAGAKTLESVVLSKMNFESFVKDLLLVR-QYRVEVYKNRAGNKASKENDWYLAFKASPGN 127
Query: 122 LGSYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNV 181
L +ED+LF NN+M + +V + + + +G+GYVD T+R LGL EF D+ F+N+
Sbjct: 128 LSQFEDILFGNNDMSASIGVVGVKMSTVDGQRQVGVGYVDSTQRKLGLCEFPDNDQFSNL 187
Query: 182 ESALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVR 241
E+ L+ +G KEC++P K LR + R G+++TERK+ +F T+D+ QDL+RL++
Sbjct: 188 EALLIQIGPKECVMPGGETAGDMGK-LRQVIQRGGILITERKRADFSTKDIYQDLNRLLK 246
Query: 242 GSV-EPVRDLV---SGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAA 297
G E V V ++A +L A++ + ELLSD+SN+G + + + YM+LD AA
Sbjct: 247 GKKGEQVNSAVLPEMENQVAVSSLSAVIKFLELLSDDSNFGQFELTTFDFSQYMKLDIAA 306
Query: 298 MRALNVLE-SKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQA 356
+RALN+ + S D + + SL L+N+ C G+RL++ W+KQPL+D N I RL++V+A
Sbjct: 307 VRALNLFQGSVEDTSGSQSLAALLNK-CKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEA 365
Query: 357 FVDDTALRQDLRQHL-KRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYE 415
FV+D LRQ+L++ L +R D+ RL +++ A LQ +LYQ +LP + AL++YE
Sbjct: 366 FVEDAELRQNLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGINQLPNVIQALEKYE 425
Query: 416 GQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALKN 475
G+ +L ++ PL L D +KF ++ET++D+DQ+EN E+++ S+D LS L+
Sbjct: 426 GKHQALFLAVFVTPLIDLRSD--FSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSELRE 483
Query: 476 EQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIV 535
+ LE+++ S A DL L K +KLD TQFG+ FR+T KEE +R F
Sbjct: 484 IMDDLEKKMQSTLVSAARDLGLDPGKQIKLDSSTQFGYYFRVTCKEEKVLRNN--KNFST 541
Query: 536 LETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSE 595
++ +K+GVKFTN+KL L ++Y K EY+ Q +V ++ + + E ++L +L++
Sbjct: 542 VDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQNAIVKEIVNISSGYVEPMQTLNDVLAQ 601
Query: 596 LDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGK 655
LD ++SFA ++ + P PY RP I G I L+ SRH CVE QD V FIPND + K
Sbjct: 602 LDAVVSFAHVSDAAPVPYVRPVILEKGRGRITLKASRHACVEVQDEVAFIPNDVHFEKDK 661
Query: 656 SWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRG 715
F IITGPNMGGKST+IRQ GV +LMAQ+G FVPC+ A +S+ DCI ARVGAGD QL+G
Sbjct: 662 QMFHIITGPNMGGKSTYIRQTGVVVLMAQIGCFVPCEWAEVSIVDCILARVGAGDSQLKG 721
Query: 716 VSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFA 775
VSTFM EMLETASIL+ AT SLIIIDELGRGTSTYDGFGLAWAI E++ +I A +FA
Sbjct: 722 VSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFA 781
Query: 776 THFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHV 835
THFHELTALA N+ T V N HV+A +T LTMLY+V+ G CDQSFGIHV
Sbjct: 782 THFHELTALA----NQIPT-----VNNLHVTAL--TTEETLTMLYQVKKGVCDQSFGIHV 830
Query: 836 AEFANFPESVVTLAREKAAELEDF 859
AE ANFP V+ A++KA ELE+F
Sbjct: 831 AELANFPRHVIECAKQKALELEEF 854
|
|
| UNIPROTKB|F1PM37 MSH2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1843 (653.8 bits), Expect = 3.7e-190, P = 3.7e-190
Identities = 392/864 (45%), Positives = 552/864 (63%)
Query: 11 LKLDAKQARGFLSFYKTLPND-TRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLG 69
L+L++ GF+ F++ +P T VR FDR D+YTAH E+A A+ + T ++ LG
Sbjct: 9 LQLESAAEVGFVRFFQAMPEKPTTTVRLFDRGDFYTAHHEDALLAAREVFKTQGVIKYLG 68
Query: 70 -TGSDALSSVSVSKNMFETIARDLLLERTDHTLELYEG-SGS------NWRLVKSGTPGN 121
G+ L SV +SK FE+ +DLLL R + +E+Y+ +GS +W L +PGN
Sbjct: 69 PAGTKTLESVVLSKMNFESFVKDLLLIR-QYRVEVYKNRAGSKASKENDWYLAFKASPGN 127
Query: 122 LGSYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNV 181
L +ED+LF NN+M + +V + + + +G+GYVD +R LGL EF D+ F+N+
Sbjct: 128 LSQFEDILFGNNDMSTSIGVVGVKMSTVDGQRQVGVGYVDSIQRKLGLCEFPDNDQFSNL 187
Query: 182 ESALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVR 241
E+ L+ +G KEC+LP K LR + R G+++TERK+ +F T+D+ QDL+RL++
Sbjct: 188 EALLIQIGPKECVLPGGETAGDMGK-LRQVIQRGGILITERKRADFFTKDIYQDLNRLLK 246
Query: 242 GSV-EPVRDLV---SGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAA 297
G E V V ++A AL A++ + ELLSD+SN+G Y + + YM+LD AA
Sbjct: 247 GKKGEQVNSAVLPEMENQVAASALSAVIKFLELLSDDSNFGQYELTTFDFSQYMKLDIAA 306
Query: 298 MRALNVLE-SKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQA 356
+RALN+ + S D + SL L+N+ C G+RL++ W+KQPL+D N I RL++V+A
Sbjct: 307 VRALNLFQGSVEDTTGSQSLAALLNK-CKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEA 365
Query: 357 FVDDTALRQDLRQHL-KRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYE 415
FV+D LRQ L++ L +R D+ RL +++ A LQ +LYQ +LP + AL++YE
Sbjct: 366 FVEDAELRQSLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGINQLPNVIRALEKYE 425
Query: 416 GQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALKN 475
G+ L+ ++ PL L D +KF ++ET++D+DQ+EN E+++ S+D LS L+
Sbjct: 426 GKHQGLLLAVFVTPLIDLRSD--FSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSELRE 483
Query: 476 EQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIV 535
+ LE+++ S A DL L K +KLD QFG+ FR+T KEE +R F
Sbjct: 484 IMDDLEKKMQSTLISAARDLGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNN--KNFST 541
Query: 536 LETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSE 595
++ +K+GVKFTN+KL L ++Y K EY+ Q +V ++ + + E ++L +L++
Sbjct: 542 VDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAQ 601
Query: 596 LDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGK 655
LD ++SFA +++ P PY RP I G I L+ SRH CVE QD V FIPND + K
Sbjct: 602 LDAVVSFAHVSNGAPVPYVRPVILEKGQGRITLKASRHACVEVQDEVAFIPNDVHFEKDK 661
Query: 656 SWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRG 715
F IITGPNMGGKST+IRQ GV +LMAQ+G FVPC+ A +S+ DCI ARVGAGD QL+G
Sbjct: 662 QMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKG 721
Query: 716 VSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFA 775
VSTFM EMLETASIL+ AT SLIIIDELGRGTSTYDGFGLAWAI E++ +I A +FA
Sbjct: 722 VSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFA 781
Query: 776 THFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHV 835
THFHELTALA N+ T V N HV+A +T LTMLY+V+ G CDQSFGIHV
Sbjct: 782 THFHELTALA----NQIPT-----VNNLHVTAL--TTEETLTMLYQVKKGVCDQSFGIHV 830
Query: 836 AEFANFPESVVTLAREKAAELEDF 859
AE ANFP V+ A++KA ELE+F
Sbjct: 831 AELANFPRHVIECAKQKALELEEF 854
|
|
| ZFIN|ZDB-GENE-040426-2932 msh2 "mutS homolog 2 (E. coli)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1841 (653.1 bits), Expect = 6.0e-190, P = 6.0e-190
Identities = 384/875 (43%), Positives = 567/875 (64%)
Query: 11 LKLDAKQARGFLSFYKTLPN--DTRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQL 68
L +D+ GFL+FY ++ + DT VR FDR DYYT HG++A F AK + T ++ L
Sbjct: 9 LSMDSASEHGFLNFYFSMSDKPDT-TVRVFDRNDYYTVHGKDAIFAAKEVFKTNGVIKNL 67
Query: 69 GTGSDALSSVSVSKNMFETIARDLLLERTDHTLELYEGSGSN-----WRLVKSGTPGNLG 123
G+G+ L SV +SK FE+ RDLLL R + +E+Y+ + + W++ +PGNL
Sbjct: 68 GSGNRRLESVVLSKMNFESFVRDLLLVR-QYRVEVYKNASKSSKEHDWQIAFKASPGNLT 126
Query: 124 SYEDVLFANN--EMQDTPVIVALFPNFRENGC-TIGLGYVDLTKRVLGLAEFLDDSHFTN 180
+E++LF + + +V + +G +G+GYVD T R LG+ EF D+ F+N
Sbjct: 127 QFEEILFGSGGGPAEGAVGVVGVRLGTGTDGQRVVGVGYVDSTLRKLGVCEFPDNDQFSN 186
Query: 181 VESALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLV 240
+E+ LV +G KEC+LP + L+ + R G++LT+RKK+EF T+D+VQDL+RL+
Sbjct: 187 LEALLVQIGPKECVLPA-GDSGGDLGKLKQVVQRGGILLTDRKKSEFTTKDIVQDLNRLL 245
Query: 241 RGSV-EPVRDL-VSGFE--IAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSA 296
+ E V + E IA L A++ Y ELL+DE+N+G++ + + L+ YMRLD+A
Sbjct: 246 KARKGETVSSAALPEMEKKIAMSCLEAVIRYLELLADEANFGSFKMTTFDLNQYMRLDNA 305
Query: 297 AMRALNVLE-SKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQ 355
A++ALN+ + S DA SL GL+N+ C G+RL++ W+KQPL+D N+I RLD+V+
Sbjct: 306 AVQALNLFQGSCDDATGTHSLAGLLNK-CRTPQGQRLVNQWIKQPLIDKNKIEERLDLVE 364
Query: 356 AFVDDTALRQDLRQHL-KRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQY 414
FV+D+ LR+ ++ L +R D+ R+ +++ + LQ ++YQS +LP + AL++Y
Sbjct: 365 TFVEDSELRKSCQEDLLRRFPDLNRMAKKFQRQSSNLQDCYRVYQSVGQLPNVVLALERY 424
Query: 415 EGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALK 474
G+ L+ ++ PL L D +KF ++ET++D++Q+E+ E+++ S+D LS L+
Sbjct: 425 SGKHQVLLHAAFISPLNDLISD--FSKFQEMIETTLDMNQVEHHEFLVKPSFDPTLSDLR 482
Query: 475 NEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFI 534
+ LE+ + + A L L K +KL+ Q G+ FR+T KEE +R +F
Sbjct: 483 ENMDRLEKAMQAALSSAARGLGLEATKTVKLESNAQIGYFFRVTCKEEKSLRNN--KKFT 540
Query: 535 VLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLS 594
L+ +K+GV+FTN+KL L ++Y K EEY+ Q +V +I A + + ++L +++
Sbjct: 541 TLDVQKNGVRFTNSKLSSLNEEYTKSREEYEEAQNAIVKEIISIAAGYVDPVQTLNEVIA 600
Query: 595 ELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRG 654
+LD ++SFA ++ + P P+ RP I G ++L+ +RHPCVEAQD V FIPND I G
Sbjct: 601 QLDAVVSFAVVSHTAPVPFIRPKILEKGSGRLVLKAARHPCVEAQDEVAFIPNDVTFISG 660
Query: 655 KSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLR 714
+ F IITGPNMGGKST+IRQVGV +LMAQ+G FVPCD A +SV DC+ ARVGAGD Q++
Sbjct: 661 EKMFHIITGPNMGGKSTYIRQVGVIVLMAQIGCFVPCDEAELSVVDCVLARVGAGDSQIK 720
Query: 715 GVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLF 774
GVSTFM EMLETA+IL+ A++ SLIIIDELGRGTSTYDGFGLAWAI E++ +++ LF
Sbjct: 721 GVSTFMAEMLETAAILRSASEDSLIIIDELGRGTSTYDGFGLAWAISEYIATRLKSFCLF 780
Query: 775 ATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIH 834
ATHFHELTALA +Q+ V N HV+A +T LTMLYKV+ G CDQSFGIH
Sbjct: 781 ATHFHELTALA---------QQVPTVRNLHVTAL--TTDSTLTMLYKVKKGVCDQSFGIH 829
Query: 835 VAEFANFPESVVTLAREKAAELEDFTPSAVISDDA 869
VAE A+FP+ V+ AREKA ELE+F + + ++A
Sbjct: 830 VAELASFPKHVIANAREKALELEEFQDISSVGEEA 864
|
|
| UNIPROTKB|E9PHA6 MSH2 "DNA mismatch repair protein Msh2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1840 (652.8 bits), Expect = 7.7e-190, P = 7.7e-190
Identities = 388/864 (44%), Positives = 551/864 (63%)
Query: 11 LKLDAKQARGFLSFYKTLPND-TRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLG 69
L+L++ GF+ F++ +P T VR FDR D+YTAHGE+A A+ + T ++ +G
Sbjct: 9 LQLESAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMG 68
Query: 70 -TGSDALSSVSVSKNMFETIARDLLLERTDHTLELYEGSGSN-------WRLVKSGTPGN 121
G+ L SV +SK FE+ +DLLL R + +E+Y+ N W L +PGN
Sbjct: 69 PAGAKNLQSVVLSKMNFESFVKDLLLVR-QYRVEVYKNRAGNKASKENDWYLAYKASPGN 127
Query: 122 LGSYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNV 181
L +ED+LF NN+M + +V + + + +G+GYVD +R LGL EF D+ F+N+
Sbjct: 128 LSQFEDILFGNNDMSASIGVVGVKMSAVDGQRQVGVGYVDSIQRKLGLCEFPDNDQFSNL 187
Query: 182 ESALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVR 241
E+ L+ +G KEC+LP K LR + R G+++TERKK +F T+D+ QDL+RL++
Sbjct: 188 EALLIQIGPKECVLPGGETAGDMGK-LRQIIQRGGILITERKKADFSTKDIYQDLNRLLK 246
Query: 242 GSV-EPVRDLV---SGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAA 297
G E + V ++A +L A++ + ELLSD+SN+G + + + YM+LD AA
Sbjct: 247 GKKGEQMNSAVLPEMENQVAVSSLSAVIKFLELLSDDSNFGQFELTTFDFSQYMKLDIAA 306
Query: 298 MRALNVLE-SKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQA 356
+RALN+ + S D + SL L+N+ C G+RL++ W+KQPL+D N I RL++V+A
Sbjct: 307 VRALNLFQGSVEDTTGSQSLAALLNK-CKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEA 365
Query: 357 FVDDTALRQDLRQHL-KRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYE 415
FV+D LRQ L++ L +R D+ RL +++ A LQ +LYQ +LP + AL+++E
Sbjct: 366 FVEDAELRQTLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGINQLPNVIQALEKHE 425
Query: 416 GQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALKN 475
G+ L+ ++ PL L D +KF ++ET++D+DQ+EN E+++ S+D LS L+
Sbjct: 426 GKHQKLLLAVFVTPLTDLRSD--FSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSELRE 483
Query: 476 EQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIV 535
LE+++ S A DL L K +KLD QFG+ FR+T KEE +R F
Sbjct: 484 IMNDLEKKMQSTLISAARDLGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNN--KNFST 541
Query: 536 LETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSE 595
++ +K+GVKFTN+KL L ++Y K EY+ Q +V ++ + + E ++L +L++
Sbjct: 542 VDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAQ 601
Query: 596 LDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGK 655
LD ++SFA +++ P PY RP I G IIL+ SRH CVE QD + FIPND + K
Sbjct: 602 LDAVVSFAHVSNGAPVPYVRPAILEKGQGRIILKASRHACVEVQDEIAFIPNDVYFEKDK 661
Query: 656 SWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRG 715
F IITGPNMGGKST+IRQ GV +LMAQ+G FVPC+ A +S+ DCI ARVGAGD QL+G
Sbjct: 662 QMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKG 721
Query: 716 VSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFA 775
VSTFM EMLETASIL+ AT SLIIIDELGRGTSTYDGFGLAWAI E++ +I A +FA
Sbjct: 722 VSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFA 781
Query: 776 THFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHV 835
THFHELTALA N+ T V N HV+A +T LTMLY+V+ G CDQSFGIHV
Sbjct: 782 THFHELTALA----NQIPT-----VNNLHVTAL--TTEETLTMLYQVKKGVCDQSFGIHV 830
Query: 836 AEFANFPESVVTLAREKAAELEDF 859
AE ANFP+ V+ A++KA ELE+F
Sbjct: 831 AELANFPKHVIECAKQKALELEEF 854
|
|
| UNIPROTKB|P43246 MSH2 "DNA mismatch repair protein Msh2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1840 (652.8 bits), Expect = 7.7e-190, P = 7.7e-190
Identities = 388/864 (44%), Positives = 551/864 (63%)
Query: 11 LKLDAKQARGFLSFYKTLPND-TRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLG 69
L+L++ GF+ F++ +P T VR FDR D+YTAHGE+A A+ + T ++ +G
Sbjct: 9 LQLESAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMG 68
Query: 70 -TGSDALSSVSVSKNMFETIARDLLLERTDHTLELYEGSGSN-------WRLVKSGTPGN 121
G+ L SV +SK FE+ +DLLL R + +E+Y+ N W L +PGN
Sbjct: 69 PAGAKNLQSVVLSKMNFESFVKDLLLVR-QYRVEVYKNRAGNKASKENDWYLAYKASPGN 127
Query: 122 LGSYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNV 181
L +ED+LF NN+M + +V + + + +G+GYVD +R LGL EF D+ F+N+
Sbjct: 128 LSQFEDILFGNNDMSASIGVVGVKMSAVDGQRQVGVGYVDSIQRKLGLCEFPDNDQFSNL 187
Query: 182 ESALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVR 241
E+ L+ +G KEC+LP K LR + R G+++TERKK +F T+D+ QDL+RL++
Sbjct: 188 EALLIQIGPKECVLPGGETAGDMGK-LRQIIQRGGILITERKKADFSTKDIYQDLNRLLK 246
Query: 242 GSV-EPVRDLV---SGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAA 297
G E + V ++A +L A++ + ELLSD+SN+G + + + YM+LD AA
Sbjct: 247 GKKGEQMNSAVLPEMENQVAVSSLSAVIKFLELLSDDSNFGQFELTTFDFSQYMKLDIAA 306
Query: 298 MRALNVLE-SKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQA 356
+RALN+ + S D + SL L+N+ C G+RL++ W+KQPL+D N I RL++V+A
Sbjct: 307 VRALNLFQGSVEDTTGSQSLAALLNK-CKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEA 365
Query: 357 FVDDTALRQDLRQHL-KRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYE 415
FV+D LRQ L++ L +R D+ RL +++ A LQ +LYQ +LP + AL+++E
Sbjct: 366 FVEDAELRQTLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGINQLPNVIQALEKHE 425
Query: 416 GQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALKN 475
G+ L+ ++ PL L D +KF ++ET++D+DQ+EN E+++ S+D LS L+
Sbjct: 426 GKHQKLLLAVFVTPLTDLRSD--FSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSELRE 483
Query: 476 EQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIV 535
LE+++ S A DL L K +KLD QFG+ FR+T KEE +R F
Sbjct: 484 IMNDLEKKMQSTLISAARDLGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNN--KNFST 541
Query: 536 LETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSE 595
++ +K+GVKFTN+KL L ++Y K EY+ Q +V ++ + + E ++L +L++
Sbjct: 542 VDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAQ 601
Query: 596 LDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGK 655
LD ++SFA +++ P PY RP I G IIL+ SRH CVE QD + FIPND + K
Sbjct: 602 LDAVVSFAHVSNGAPVPYVRPAILEKGQGRIILKASRHACVEVQDEIAFIPNDVYFEKDK 661
Query: 656 SWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRG 715
F IITGPNMGGKST+IRQ GV +LMAQ+G FVPC+ A +S+ DCI ARVGAGD QL+G
Sbjct: 662 QMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKG 721
Query: 716 VSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFA 775
VSTFM EMLETASIL+ AT SLIIIDELGRGTSTYDGFGLAWAI E++ +I A +FA
Sbjct: 722 VSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFA 781
Query: 776 THFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHV 835
THFHELTALA N+ T V N HV+A +T LTMLY+V+ G CDQSFGIHV
Sbjct: 782 THFHELTALA----NQIPT-----VNNLHVTAL--TTEETLTMLYQVKKGVCDQSFGIHV 830
Query: 836 AEFANFPESVVTLAREKAAELEDF 859
AE ANFP+ V+ A++KA ELE+F
Sbjct: 831 AELANFPKHVIECAKQKALELEEF 854
|
|
| MGI|MGI:101816 Msh2 "mutS homolog 2 (E. coli)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1834 (650.7 bits), Expect = 3.3e-189, P = 3.3e-189
Identities = 384/864 (44%), Positives = 550/864 (63%)
Query: 11 LKLDAKQARGFLSFYKTLPND-TRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLG 69
L+L+ GF+ F++ +P + VR FDR D+YTAHGE+A A+ + T ++ +G
Sbjct: 9 LQLEGAAEAGFVRFFEGMPEKPSTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMG 68
Query: 70 -TGSDALSSVSVSKNMFETIARDLLLERTDHTLELYEGSGSN-------WRLVKSGTPGN 121
GS L SV +SK FE+ +DLLL R + +E+Y+ N W L +PGN
Sbjct: 69 PAGSKTLQSVVLSKMNFESFVKDLLLVR-QYRVEVYKNKAGNKASKENEWYLAFKASPGN 127
Query: 122 LGSYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNV 181
L +ED+LF NN+M + ++ + + +G+GYVD T+R LGL EF ++ F+N+
Sbjct: 128 LSQFEDILFGNNDMSASVGVMGIKMAVVDGQRHVGVGYVDSTQRKLGLCEFPENDQFSNL 187
Query: 182 ESALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVR 241
E+ L+ +G KEC+LP K LR + R G+++TERK+ +F T+D+ QDL+RL++
Sbjct: 188 EALLIQIGPKECVLPGGETTGDMGK-LRQVIQRGGILITERKRADFSTKDIYQDLNRLLK 246
Query: 242 GSV-EPVRDLV---SGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAA 297
G E + ++A +L A++ + ELLSD+SN+G + + + YM+LD AA
Sbjct: 247 GKKGEQINSAALPEMENQVAVSSLSAVIKFLELLSDDSNFGQFELATFDFSQYMKLDMAA 306
Query: 298 MRALNVLE-SKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQA 356
+RALN+ + S D + SL L+N+ C G+RL++ W+KQPL+D N I RL++V+A
Sbjct: 307 VRALNLFQGSVEDTTGSQSLAALLNK-CKTAQGQRLVNQWIKQPLMDRNRIEERLNLVEA 365
Query: 357 FVDDTALRQDLRQHL-KRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYE 415
FV+D+ LRQ L++ L +R D+ RL +++ A LQ +LYQ +LP + AL++YE
Sbjct: 366 FVEDSELRQSLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGINQLPSVIQALEKYE 425
Query: 416 GQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALKN 475
G+ +L+ ++ PL L D +KF ++ET++D+DQ+EN E+++ S+D LS L+
Sbjct: 426 GRHQALLLAVFVTPLIDLRSD--FSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSELRE 483
Query: 476 EQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIV 535
+ LE+++ S A L L K +KLD QFG+ FR+T KEE +R F
Sbjct: 484 VMDGLEKKMQSTLINAARGLGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNN--KNFST 541
Query: 536 LETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSE 595
++ +K+GVKFTN++L L ++Y K EY+ Q +V ++ + + E ++L +L+
Sbjct: 542 VDIQKNGVKFTNSELSSLNEEYTKNKGEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAH 601
Query: 596 LDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGK 655
LD ++SFA ++++ P PY RP I G IIL+ SRH CVE QD V FIPND + K
Sbjct: 602 LDAIVSFAHVSNAAPVPYVRPVILEKGKGRIILKASRHACVEVQDEVAFIPNDVHFEKDK 661
Query: 656 SWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRG 715
F IITGPNMGGKST+IRQ GV +LMAQ+G FVPC+ A +S+ DCI ARVGAGD QL+G
Sbjct: 662 QMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKG 721
Query: 716 VSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFA 775
VSTFM EMLETASIL+ AT SLIIIDELGRGTSTYDGFGLAWAI +++ +I A +FA
Sbjct: 722 VSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISDYIATKIGAFCMFA 781
Query: 776 THFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHV 835
THFHELTALA N+ T V N HV+A +T LTMLY+V+ G CDQSFGIHV
Sbjct: 782 THFHELTALA----NQIPT-----VNNLHVTAL--TTEETLTMLYQVKKGVCDQSFGIHV 830
Query: 836 AEFANFPESVVTLAREKAAELEDF 859
AE ANFP V+ A++KA ELE+F
Sbjct: 831 AELANFPRHVIACAKQKALELEEF 854
|
|
| RGD|620786 Msh2 "mutS homolog 2 (E. coli)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1784 (633.1 bits), Expect = 6.6e-184, P = 6.6e-184
Identities = 377/864 (43%), Positives = 544/864 (62%)
Query: 11 LKLDAKQARGFLSFYKTLPND-TRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLG 69
L+L+ GF+ F++ +P + V FDR D+YTAHGE+A A+ + T ++ +G
Sbjct: 9 LQLEGAAEVGFVRFFEGMPEKPSTTVGLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMG 68
Query: 70 -TGSDALSSVSVSKNMFETIARDLLLERTDHTLELYEGSGSN-------WRLVKSGTPGN 121
G+ L +V +SK FE+ +DLLL R + +E+Y+ N W L +PGN
Sbjct: 69 PAGAKTLQTVVLSKMNFESFVKDLLLVR-HYRVEVYKNKAGNKASKENDWYLAYKASPGN 127
Query: 122 LGSYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNV 181
L +ED+LF NN+M + I+ + + + +G+G VD T+R LGL EF D+ F+N+
Sbjct: 128 LSQFEDILFGNNDMATSIGIMGIKLSTVDGQRQVGVGDVDSTQRKLGLCEFPDNDQFSNL 187
Query: 182 ESALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVR 241
E+ L+ +G KEC+LP K LR + R G+++TERK+ +F T+D+ QDL+RL++
Sbjct: 188 EALLIQIGPKECILPGGETAGDMGK-LRQVIQRGGILITERKRIDFSTKDIYQDLNRLLK 246
Query: 242 GSV-EPVRDLV---SGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAA 297
G E + V ++A +L A++ + ELLSD+SN+G + + + YM+LD AA
Sbjct: 247 GRKGEQMNSAVLPEMENQVAVSSLSAVIKFLELLSDDSNFGQFELATFDFSQYMKLDMAA 306
Query: 298 MRALNVLE-SKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQA 356
+RALN+ + S D + SL +N+ C G+RL+ W+KQPL+D N I RL++V+A
Sbjct: 307 VRALNLFQGSVEDTTGSQSLAAFLNK-CKTAQGQRLVSQWIKQPLMDKNRIEERLNLVEA 365
Query: 357 FVDDTALRQDLRQHL-KRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYE 415
FV+D+ LR+ L++ L +R D+ RL +++ A LQ +LYQ +LP + AL++Y+
Sbjct: 366 FVEDSELRRALQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGVKQLPNVIQALEKYQ 425
Query: 416 GQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALKN 475
G+ +L+ ++ PL L D +KF +ET++D+DQ+EN E+++ S+D LS L+
Sbjct: 426 GRHQALLLAVFVTPLTDLRSD--FSKFQEKIETTLDMDQVENHEFLVKPSFDPNLSELRE 483
Query: 476 EQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIV 535
+ LE+++ S A L L K +KLD QFG+ FR+T KEE +R F
Sbjct: 484 VMDGLEKKMQSTLISAARGLGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNN--KNFST 541
Query: 536 LETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSE 595
++ +K+GVKFTN++L L ++Y K EY+ Q +V ++ + + E +++ +L+
Sbjct: 542 VDIQKNGVKFTNSELSSLNEEYTKNKGEYEEAQDAIVKEIVNISSGYVEPMQTVNDVLAH 601
Query: 596 LDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGK 655
LD ++SFA ++++ P PY RP I G II++ SRH CVE Q V FIPND + K
Sbjct: 602 LDAVVSFAHVSNAAPVPYVRPVILEKGKGRIIVKASRHACVEVQHDVAFIPNDVHFEKDK 661
Query: 656 SWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRG 715
F IITGPNMGGKST+IRQ GV +LMAQ+G FVPC+ A +S+ DCI ARVGAGD QL+G
Sbjct: 662 QMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKG 721
Query: 716 VSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFA 775
VSTFM EMLETASIL+ AT SLIIIDELGRGTSTYDGFGLAWAI E++ I A +FA
Sbjct: 722 VSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATNIGAFCMFA 781
Query: 776 THFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHV 835
THFHELTALA Q+ V N HV+A +T LTMLY+V+ G CDQSFGIHV
Sbjct: 782 THFHELTALA---------SQIPTVNNLHVTAL--TTEETLTMLYQVKTGVCDQSFGIHV 830
Query: 836 AEFANFPESVVTLAREKAAELEDF 859
AE ANFP V+ A++KA ELE+F
Sbjct: 831 AELANFPRHVIECAKQKALELEEF 854
|
|
| UNIPROTKB|F1NFH4 MSH2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1776 (630.2 bits), Expect = 4.7e-183, P = 4.7e-183
Identities = 371/805 (46%), Positives = 532/805 (66%)
Query: 68 LGTGSDALSSVSVSKNMFETIARDLLLERTDHTLELYE---GSGS----NWRLVKSGTPG 120
L G+ L SV +SK FE+ RDLLL R + +E+Y+ GS S +W L G+PG
Sbjct: 1 LAPGNQKLESVVLSKMNFESFVRDLLLVR-HYRVEVYKNKAGSKSVKENDWYLAYKGSPG 59
Query: 121 NLGSYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTN 180
NL +E+VLFANN+M +V + + + IG+GYVD T R L + EF D+ F+N
Sbjct: 60 NLAQFEEVLFANNDMSMAIGVVGVKLSSADGQRVIGVGYVDTTLRKLSVCEFPDNDQFSN 119
Query: 181 VESALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLV 240
+E+ LV LG KEC+LP + E LR + R G+++T+RKK +F T+D+VQDL+RL+
Sbjct: 120 LEALLVQLGPKECVLPGGDT-AGEMGKLRQVVQRGGILITDRKKADFTTKDIVQDLNRLL 178
Query: 241 RGSV-EPVRDLV---SGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSA 296
+ E + ++A +L A++ + ELLSD+SN+G Y + + L YM LD+A
Sbjct: 179 KSRKGEQMNSAALPEMEKQVAVSSLSAVIKFLELLSDDSNFGQYELTTFDLSQYMVLDNA 238
Query: 297 AMRALNVLESKTD-ANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQ 355
A++ALN+ +S + AN SL GL+N+ C G+RL++ W+KQPL+D N I RL++V+
Sbjct: 239 AVQALNLFQSSVENANNTQSLAGLLNK-CRTPQGQRLVNQWIKQPLMDKNRIEERLNLVE 297
Query: 356 AFVDDTALRQDLRQHL-KRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQY 414
AFV DT LRQ L++ L +R D+ RL +++ A LQ ++YQ+ +LP + AL+++
Sbjct: 298 AFVVDTELRQGLQEDLLRRFPDLNRLAKKFQRQAATLQDCYRMYQAINQLPNVVQALEKH 357
Query: 415 EGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALK 474
EG L+ ++ PL + D +KF+ ++ET++D+D++EN E+++ +S+D L+ L+
Sbjct: 358 EGAHQMLLLAVFITPLNDIHSD--FSKFLEMIETTLDMDKVENHEFLVKASFDPNLTELR 415
Query: 475 NEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFI 534
+ LE + +L K A +L L K++KL+ +QFGH FRIT KEE +R + ++
Sbjct: 416 EKMNELEESMQTLLKSAAKELGLEAGKSIKLESNSQFGHHFRITCKEEKVLRNNM--KYK 473
Query: 535 VLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLS 594
+ +T+K+GVKFTN+KL + ++Y K EEY+ Q +V +I A ++E +++ +++
Sbjct: 474 ITDTQKNGVKFTNSKLSAINEEYIKNREEYEEAQDAIVKEIINIASGYAEPIQTMNDVIA 533
Query: 595 ELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRG 654
+LD ++SFA +++ P PY RP I G I+L+G+RHPC+E QD V FIPND +G
Sbjct: 534 QLDAIVSFAHVSNGAPVPYVRPVILEKGQGRIVLKGARHPCIEVQDEVAFIPNDVTFEKG 593
Query: 655 KSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLR 714
K F IITGPNMGGKST+IRQ GV +LMAQ+G FVPC+ A I++ DCI ARVGAGD QL+
Sbjct: 594 KQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCNSAEITIVDCILARVGAGDSQLK 653
Query: 715 GVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLF 774
GVSTFM EMLETASIL+ A++ SLIIIDELGRGTSTYDGFGLAWAI E++ +I A +F
Sbjct: 654 GVSTFMAEMLETASILRTASENSLIIIDELGRGTSTYDGFGLAWAISEYIASKICAFCMF 713
Query: 775 ATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIH 834
ATHFHELTALA Q+ V N HV+A + LTMLY+V+ G CDQSFGIH
Sbjct: 714 ATHFHELTALAD---------QVPTVNNLHVTALTSDDT--LTMLYRVKAGVCDQSFGIH 762
Query: 835 VAEFANFPESVVTLAREKAAELEDF 859
VAE A FP+ V+ AREKA ELE+F
Sbjct: 763 VAELAAFPKHVIESAREKALELEEF 787
|
|
| UNIPROTKB|F1NV33 MSH2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1767 (627.1 bits), Expect = 4.2e-182, P = 4.2e-182
Identities = 369/798 (46%), Positives = 529/798 (66%)
Query: 75 LSSVSVSKNMFETIARDLLLERTDHTLELYE---GSGS----NWRLVKSGTPGNLGSYED 127
L SV +SK FE+ RDLLL R + +E+Y+ GS S +W L G+PGNL +E+
Sbjct: 3 LESVVLSKMNFESFVRDLLLVR-HYRVEVYKNKAGSKSVKENDWYLAYKGSPGNLAQFEE 61
Query: 128 VLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNVESALVA 187
VLFANN+M +V + + + IG+GYVD T R L + EF D+ F+N+E+ LV
Sbjct: 62 VLFANNDMSMAIGVVGVKLSSADGQRVIGVGYVDTTLRKLSVCEFPDNDQFSNLEALLVQ 121
Query: 188 LGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVRGSV-EP 246
LG KEC+LP + E LR + R G+++T+RKK +F T+D+VQDL+RL++ E
Sbjct: 122 LGPKECVLPGGDT-AGEMGKLRQVVQRGGILITDRKKADFTTKDIVQDLNRLLKSRKGEQ 180
Query: 247 VRDLV---SGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAAMRALNV 303
+ ++A +L A++ + ELLSD+SN+G Y + + L YM LD+AA++ALN+
Sbjct: 181 MNSAALPEMEKQVAVSSLSAVIKFLELLSDDSNFGQYELTTFDLSQYMVLDNAAVQALNL 240
Query: 304 LESKTD-ANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTA 362
+S + AN SL GL+N+ C G+RL++ W+KQPL+D N I RL++V+AFV DT
Sbjct: 241 FQSSVENANNTQSLAGLLNK-CRTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVVDTE 299
Query: 363 LRQDLRQHL-KRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSL 421
LRQ L++ L +R D+ RL +++ A LQ ++YQ+ +LP + AL+++EG L
Sbjct: 300 LRQGLQEDLLRRFPDLNRLAKKFQRQAATLQDCYRMYQAINQLPNVVQALEKHEGAHQML 359
Query: 422 IKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALKNEQESLE 481
+ ++ PL + D +KF+ ++ET++D+D++EN E+++ +S+D L+ L+ + LE
Sbjct: 360 LLAVFITPLNDIHSD--FSKFLEMIETTLDMDKVENHEFLVKASFDPNLTELREKMNELE 417
Query: 482 RQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKD 541
+ +L K A +L L K++KL+ +QFGH FRIT KEE +R + ++ + +T+K+
Sbjct: 418 ESMQTLLKSAAKELGLEAGKSIKLESNSQFGHHFRITCKEEKVLRNNM--KYKITDTQKN 475
Query: 542 GVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLS 601
GVKFTN+KL + ++Y K EEY+ Q +V +I A ++E +++ ++++LD ++S
Sbjct: 476 GVKFTNSKLSAINEEYIKNREEYEEAQDAIVKEIINIASGYAEPIQTMNDVIAQLDAIVS 535
Query: 602 FADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQII 661
FA +++ P PY RP I G I+L+G+RHPC+E QD V FIPND +GK F II
Sbjct: 536 FAHVSNGAPVPYVRPVILEKGQGRIVLKGARHPCIEVQDEVAFIPNDVTFEKGKQMFHII 595
Query: 662 TGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQ 721
TGPNMGGKST+IRQ GV +LMAQ+G FVPC+ A I++ DCI ARVGAGD QL+GVSTFM
Sbjct: 596 TGPNMGGKSTYIRQTGVIVLMAQIGCFVPCNSAEITIVDCILARVGAGDSQLKGVSTFMA 655
Query: 722 EMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHEL 781
EMLETASIL+ A++ SLIIIDELGRGTSTYDGFGLAWAI E++ +I A +FATHFHEL
Sbjct: 656 EMLETASILRTASENSLIIIDELGRGTSTYDGFGLAWAISEYIASKICAFCMFATHFHEL 715
Query: 782 TALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANF 841
TALA Q+ V N HV+A + LTMLY+V+ G CDQSFGIHVAE A F
Sbjct: 716 TALAD---------QVPTVNNLHVTALTSDDT--LTMLYRVKAGVCDQSFGIHVAELAAF 764
Query: 842 PESVVTLAREKAAELEDF 859
P+ V+ AREKA ELE+F
Sbjct: 765 PKHVIESAREKALELEEF 782
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P54275 | MSH2_RAT | No assigned EC number | 0.4331 | 0.9313 | 0.8863 | yes | no |
| Q9XGC9 | MSH2_MAIZE | No assigned EC number | 0.7206 | 0.9786 | 0.9225 | N/A | no |
| Q553L4 | MSH2_DICDI | No assigned EC number | 0.3904 | 0.9358 | 0.8868 | yes | no |
| O24617 | MSH2_ARATH | No assigned EC number | 0.7995 | 0.9695 | 0.9188 | yes | no |
| P25847 | MSH2_YEAST | No assigned EC number | 0.3896 | 0.9256 | 0.8526 | yes | no |
| O74773 | MSH2_SCHPO | No assigned EC number | 0.3681 | 0.9279 | 0.8391 | yes | no |
| Q3MHE4 | MSH2_BOVIN | No assigned EC number | 0.4490 | 0.9358 | 0.8897 | yes | no |
| P43248 | MSH2_DROME | No assigned EC number | 0.3884 | 0.9290 | 0.8996 | yes | no |
| P43247 | MSH2_MOUSE | No assigned EC number | 0.4421 | 0.9358 | 0.8887 | yes | no |
| P43246 | MSH2_HUMAN | No assigned EC number | 0.4447 | 0.9313 | 0.8854 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 888 | |||
| COG0249 | 843 | COG0249, MutS, Mismatch repair ATPase (MutS family | 0.0 | |
| PRK05399 | 854 | PRK05399, PRK05399, DNA mismatch repair protein Mu | 1e-157 | |
| cd03285 | 222 | cd03285, ABC_MSH2_euk, ATP-binding cassette domain | 1e-146 | |
| pfam00488 | 235 | pfam00488, MutS_V, MutS domain V | 1e-136 | |
| TIGR01070 | 840 | TIGR01070, mutS1, DNA mismatch repair protein MutS | 1e-121 | |
| smart00534 | 185 | smart00534, MUTSac, ATPase domain of DNA mismatch | 9e-97 | |
| cd03284 | 216 | cd03284, ABC_MutS1, ATP-binding cassette domain of | 6e-93 | |
| smart00533 | 308 | smart00533, MUTSd, DNA-binding domain of DNA misma | 3e-88 | |
| cd03243 | 202 | cd03243, ABC_MutS_homologs, ATP-binding cassette d | 1e-78 | |
| cd03286 | 218 | cd03286, ABC_MSH6_euk, ATP-binding cassette domain | 4e-68 | |
| cd03287 | 222 | cd03287, ABC_MSH3_euk, ATP-binding cassette domain | 1e-65 | |
| cd03281 | 213 | cd03281, ABC_MSH5_euk, ATP-binding cassette domain | 5e-52 | |
| cd03282 | 204 | cd03282, ABC_MSH4_euk, ATP-binding cassette domain | 9e-51 | |
| pfam05192 | 290 | pfam05192, MutS_III, MutS domain III | 3e-50 | |
| cd03283 | 199 | cd03283, ABC_MutS-like, ATP-binding cassette domai | 3e-28 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 8e-28 | |
| cd03280 | 200 | cd03280, ABC_MutS2, ATP-binding cassette domain of | 7e-27 | |
| pfam01624 | 113 | pfam01624, MutS_I, MutS domain I | 2e-22 | |
| TIGR01069 | 771 | TIGR01069, mutS2, MutS2 family protein | 5e-22 | |
| PRK00409 | 782 | PRK00409, PRK00409, recombination and DNA strand e | 5e-20 | |
| COG1193 | 753 | COG1193, COG1193, Mismatch repair ATPase (MutS fam | 3e-19 | |
| pfam05190 | 92 | pfam05190, MutS_IV, MutS family domain IV | 1e-16 | |
| pfam05188 | 133 | pfam05188, MutS_II, MutS domain II | 5e-13 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-09 |
| >gnl|CDD|223327 COG0249, MutS, Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 573 bits (1479), Expect = 0.0
Identities = 283/837 (33%), Positives = 424/837 (50%), Gaps = 73/837 (8%)
Query: 34 AVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLGTGSDALSSVSVSKNMFETIARDLL 93
+ FF D+Y E+A A+ T T G+ ++ V + L+
Sbjct: 23 TLLFFRMGDFYELFFEDAKIAARLLDITLTKR-----GNIPMAGVPYHA--LDYYLAKLI 75
Query: 94 -----LERTDHTLELYEGSGSNWR-LVKSGTPGNLGSYEDVLFANNEMQDTPVIVALFPN 147
+ + + E G R +V+ TPG L ++ L ++ E + AL
Sbjct: 76 ELGYKVAICEQLEDPAEAKGVVERKVVRVVTPGTLT--DEALLSDRENN---YLAALA-- 128
Query: 148 FRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKT 207
+ +GL ++DL+ ++EF + S L L KE LL E++ SS
Sbjct: 129 -IDRDGKVGLAFIDLSTGEFFVSEF----EREKLLSELKRLQPKELLLS-ESLLSST--- 179
Query: 208 LRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVRGSVEPVRDLV-SGFEIAP---GALGA 263
A + G+ + + F D + L VRDL G P A GA
Sbjct: 180 --LAEIQKGLFVVRLPASFFDEDDAEEILSEYFG-----VRDLDGFGLISTPLALSAAGA 232
Query: 264 LLSYAELLSDESNYGNYY-IRKYSLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNR 322
LLSY + + ++ + I++Y L+ YM LD+A R L + + K SLF L++R
Sbjct: 233 LLSYLKD-TQKTFLPHIQIIQRYDLEDYMVLDAATRRNLELFSNLRGNGKKGSLFWLLDR 291
Query: 323 TCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMH 382
T T MG RLL WL QPLLD EI RLD V+ D+ LR+ LR+ LK++ D+ERL+
Sbjct: 292 TVTP-MGSRLLKRWLLQPLLDKEEIEERLDAVEELKDNPELREKLREMLKKVPDLERLLS 350
Query: 383 NLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKF 442
L RA + +++L S ++P I L S + L LE + D+L +
Sbjct: 351 RLSLGRASPRDLLRLRDSLEKIPEIFKLLS------SLKSESDLLLLLEDIESLDYLAEL 404
Query: 443 IALVETSVDLDQLEN-GEYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDK 501
+ L+ET+++ D + +I Y+ L L++ + + I L + + K
Sbjct: 405 LELLETAINEDPPLAVRDGIIKEGYNIELDELRDLLNNAKEWIAKLELEERERTGI---K 461
Query: 502 ALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVL 561
+LK+ +G+ +TK + +I +T K+ +FT +LK+L ++
Sbjct: 462 SLKIKYNKVYGYYIEVTKSNAKLVPDD----YIRRQTLKNAERFTTPELKELEEKLLDAE 517
Query: 562 EEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPP 621
E+ + EL + + + + ++LA L+ELDVL S A++A Y RP+
Sbjct: 518 EKILALEYELFDELREKILAHINELQALAKALAELDVLSSLAEIA--AEQNYVRPEFV-- 573
Query: 622 DVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL 681
D D+ ++ RHP VEA F+PND L G +ITGPNMGGKST++RQV + ++
Sbjct: 574 DSNDLEIKEGRHPVVEAVLDNGFVPNDIDL-SGNRRIILITGPNMGGKSTYLRQVALIVI 632
Query: 682 MAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIII 741
+AQ+GSFVP ++A I + D IF R+GA D G STFM EMLETA+IL AT+RSL+I+
Sbjct: 633 LAQIGSFVPAEKARIGIVDRIFTRIGAADDLASGRSTFMVEMLETANILDNATERSLVIL 692
Query: 742 DELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVA 801
DE+GRGTSTYDG +AWA+ E+L E+I TLFATH+HELT L + + V
Sbjct: 693 DEIGRGTSTYDGLAIAWAVLEYLHEKIGCRTLFATHYHELTELEEK---------LPQVK 743
Query: 802 NYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELED 858
NYH+SA + +T LYKV+PG D+S+GIHVA+ A PE V+ ARE AELE
Sbjct: 744 NYHMSAVEE--GGDITFLYKVKPGIADKSYGIHVAKLAGLPEEVIERAREILAELEK 798
|
Length = 843 |
| >gnl|CDD|235444 PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional | Back alignment and domain information |
|---|
Score = 481 bits (1242), Expect = e-157
Identities = 253/754 (33%), Positives = 356/754 (47%), Gaps = 146/754 (19%)
Query: 154 TIGLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDALT 213
GL Y+DL+ + E + + L L E L+P + + R
Sbjct: 140 GYGLAYLDLSTGEFRVTEL----DEEELLAELARLNPAEILVPEDFSEDELLLLRRGLRR 195
Query: 214 RCGVML-----TERKKTEFKTRDLVQDLDRLVRGSVEPVRDLVSGFEI----APGALGAL 264
R +R +F L GF + A A GAL
Sbjct: 196 RPPWEFDLDTAEKRLLEQFGVASL-------------------DGFGVDLPLAIRAAGAL 236
Query: 265 LSYAEL-----LSDESNYGNYYIRK---YSLDSYMRLDSAAMRALNVLESKTDANKNFSL 316
L Y + L ++R Y Y+ LD+A R L + E+ KN SL
Sbjct: 237 LQYLKETQKRSLP--------HLRSPKRYEESDYLILDAATRRNLELTENLRGGRKN-SL 287
Query: 317 FGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISD 376
+++RT TA MG RLL WL +PL D I ARLD V+ ++D LR+DLR+ LK + D
Sbjct: 288 LSVLDRTVTA-MGGRLLRRWLHRPLRDREAIEARLDAVEELLEDPLLREDLRELLKGVYD 346
Query: 377 IERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDD 436
+ERL+ + RA + + L S LP ++ L + + + + E+ LDPLE L D
Sbjct: 347 LERLLSRIALGRANPRDLAALRDSLEALPELKELLAELDSPLLAELAEQ-LDPLEELAD- 404
Query: 437 DHLNKFIALVET---------------SVDLDQL----ENGEYMISSSYDTGLSALKNEQ 477
L + A+VE +LD+L +NG+ + E
Sbjct: 405 -LLER--AIVEEPPLLIRDGGVIADGYDAELDELRALSDNGKDWL------------AEL 449
Query: 478 ESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPK-----IRKKLTTQ 532
E+ ER+ + +LK+ FG+ +TK K IR++
Sbjct: 450 EARERERTGI-------------SSLKVGYNKVFGYYIEVTKANLDKVPEDYIRRQ---- 492
Query: 533 FIVLETRKDGVKFTNTKLKKLGDQYQKVLE--------EYKNCQKELVNRVIQTAVTFSE 584
T K+ ++ +LK+L D K+L EY EL + + E
Sbjct: 493 -----TLKNAERYITPELKELED---KILSAEEKALALEY-----ELFEELREEVAEHIE 539
Query: 585 IFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWV-N 643
+ LA L+ELDVL S A++A Y RP+ D I +E RHP VE
Sbjct: 540 RLQKLAKALAELDVLASLAEVAEENN--YVRPEFT--DDPGIDIEEGRHPVVEQVLGGEP 595
Query: 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIF 703
F+PNDC L + +ITGPNM GKST++RQV + +L+AQ+GSFVP + A I + D IF
Sbjct: 596 FVPNDCDLDEERR-LLLITGPNMAGKSTYMRQVALIVLLAQIGSFVPAESARIGIVDRIF 654
Query: 704 ARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEH 763
R+GA D G STFM EM ETA+IL AT+RSL+++DE+GRGTSTYDG +AWA+ E+
Sbjct: 655 TRIGASDDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEY 714
Query: 764 LVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVE 823
L ++I A TLFATH+HELT L + GV N HV+ + L+KV
Sbjct: 715 LHDKIGAKTLFATHYHELTELEEKLP---------GVKNVHVAVK--EHGGDIVFLHKVV 763
Query: 824 PGACDQSFGIHVAEFANFPESVVTLAREKAAELE 857
PGA D+S+GIHVA+ A P SV+ ARE A+LE
Sbjct: 764 PGAADKSYGIHVAKLAGLPASVIKRAREILAQLE 797
|
Length = 854 |
| >gnl|CDD|213252 cd03285, ABC_MSH2_euk, ATP-binding cassette domain of eukaryotic MutS2 homolog | Back alignment and domain information |
|---|
Score = 431 bits (1110), Expect = e-146
Identities = 158/231 (68%), Positives = 181/231 (78%), Gaps = 9/231 (3%)
Query: 627 ILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVG 686
+L+ +RHPCVEAQD V FIPND L RGKS F IITGPNMGGKST+IRQ+GV +LMAQ+G
Sbjct: 1 VLKEARHPCVEAQDDVAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVLMAQIG 60
Query: 687 SFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGR 746
FVPCD A I + DCI ARVGA D QL+GVSTFM EMLETA+ILK AT+ SLIIIDELGR
Sbjct: 61 CFVPCDSADIPIVDCILARVGASDSQLKGVSTFMAEMLETAAILKSATENSLIIIDELGR 120
Query: 747 GTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVS 806
GTSTYDGFGLAWAI E++ +I+ LFATHFHELTALA ++ V N HV+
Sbjct: 121 GTSTYDGFGLAWAIAEYIATQIKCFCLFATHFHELTALAD---------EVPNVKNLHVT 171
Query: 807 AHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELE 857
A D SR LTMLYKVE GACDQSFGIHVAE ANFP+ V+ +A++KA ELE
Sbjct: 172 ALTDDASRTLTMLYKVEKGACDQSFGIHVAELANFPKEVIEMAKQKALELE 222
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 222 |
| >gnl|CDD|215944 pfam00488, MutS_V, MutS domain V | Back alignment and domain information |
|---|
Score = 405 bits (1043), Expect = e-136
Identities = 137/248 (55%), Positives = 170/248 (68%), Gaps = 14/248 (5%)
Query: 613 YTRPDINPPDVGDIILEGSRHPCVEAQ-DWVNFIPNDCKLIRGKSWFQIITGPNMGGKST 671
Y RP+ + + +EG RHP VEA D NF+PND L + +S +ITGPNMGGKST
Sbjct: 1 YVRPEFT--ESAALHIEGGRHPVVEAVLDAGNFVPNDVSLGKERSRILLITGPNMGGKST 58
Query: 672 FIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILK 731
++RQV + ++MAQ+GSFVP + A I + D IF R+GA D G STFM EMLETA+IL
Sbjct: 59 YLRQVALIVIMAQIGSFVPAESARIGIVDRIFTRIGASDDLASGRSTFMVEMLETANILH 118
Query: 732 GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANE 791
ATD+SL+I+DELGRGTSTYDG +AWA+ EHL E+IRA TLFATH+HELT LA +
Sbjct: 119 NATDKSLVILDELGRGTSTYDGLAIAWAVAEHLAEKIRARTLFATHYHELTKLAEKLPA- 177
Query: 792 FNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLARE 851
V N H++A T+ + LYKV+PGA D+S+GIHVAE A PESVV ARE
Sbjct: 178 --------VKNVHMAAV--ETNGDIVFLYKVKPGAADKSYGIHVAELAGLPESVVERARE 227
Query: 852 KAAELEDF 859
AELED
Sbjct: 228 VLAELEDR 235
|
This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with pfam01624, pfam05188, pfam05192 and pfam05190. The mutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. The aligned region corresponds with domain V of Thermus aquaticus MutS as characterized in, which contains a Walker A motif, and is structurally similar to the ATPase domain of ABC transporters. Length = 235 |
| >gnl|CDD|233259 TIGR01070, mutS1, DNA mismatch repair protein MutS | Back alignment and domain information |
|---|
Score = 386 bits (994), Expect = e-121
Identities = 231/703 (32%), Positives = 341/703 (48%), Gaps = 56/703 (7%)
Query: 156 GLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDALTRC 215
GL +DLT + E D + + L L E LL + + E LR+
Sbjct: 135 GLATLDLTTGEFKVTELAD---KETLYAELQRLNPAEVLLAED-LSEMEAIELREFRKDT 190
Query: 216 GVMLTERKKTEFKTRDLVQ-DLDRLVRGSVEPVRDLVSGFEIAPGALGALLSYAELLSDE 274
VM E +F T DL L G A G LL YA+
Sbjct: 191 AVMSLEA---QFGTEDLGGLGLRNAPLGL---------------TAAGCLLQYAKRTQRT 232
Query: 275 SNYGNYYIRKYSLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLH 334
+ +R Y L +M+LD+A R L + E+ +N +LF +++ T TA MG RLL
Sbjct: 233 ALPHLQPVRLYELQDFMQLDAATRRNLELTENLRGGKQN-TLFSVLDETKTA-MGSRLLK 290
Query: 335 MWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMHNLEKRRAGLQQI 394
WL +PL D + AR D V+ + LR+ LR LK + D+ERL + A + +
Sbjct: 291 RWLHRPLRDREVLEARQDTVEVLLRHFFLREGLRPLLKEVGDLERLAARVALGNARPRDL 350
Query: 395 VKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQ 454
+L S +LP +R+ L++ EG + + +D L + L AL+E L
Sbjct: 351 ARLRTSLEQLPELRALLEELEGPTLQALAAQ-IDDFSELLEL--LEA--ALIENP-PLVV 404
Query: 455 LENGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHV 514
+ G +I YD L L+ + L + +P LK+ FG+
Sbjct: 405 RDGG--LIREGYDEELDELRAASREGTDYLARLEARERERTGIP---TLKVGYNAVFGYY 459
Query: 515 FRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNR 574
+T+ + + + +T K+ ++ +LK+ D+ + + +KEL
Sbjct: 460 IEVTRGQL----HLVPAHYRRRQTLKNAERYITPELKEKEDKVLEAEGKILALEKELFEE 515
Query: 575 VIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHP 634
+ + + E + A L+ELDVL + A++A + YTRP D I EG RHP
Sbjct: 516 LRELLKKYLEALQEAARALAELDVLANLAEVAET--LHYTRPRFGD-DPQLRIREG-RHP 571
Query: 635 CVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRA 694
VE F+PND ++ + +ITGPNMGGKST++RQ + L+AQ+GSFVP + A
Sbjct: 572 VVEQVLRTPFVPNDLEMAHNRR-MLLITGPNMGGKSTYMRQTALIALLAQIGSFVPAESA 630
Query: 695 SISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGF 754
+ + D IF R+GA D G STFM EM E A+IL AT+ SL++ DE+GRGTSTYDG
Sbjct: 631 ELPLFDRIFTRIGASDDLASGRSTFMVEMTEAANILHNATENSLVLFDEIGRGTSTYDGL 690
Query: 755 GLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSR 814
LAWAI E+L E IRA TLFATH+ ELTAL + + G+ N HV+A +
Sbjct: 691 ALAWAIAEYLHEHIRAKTLFATHYFELTALE---------ESLPGLKNVHVAA--LEHNG 739
Query: 815 KLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELE 857
+ L++V PG +S+G+ VA A P+ V+ AR+ +LE
Sbjct: 740 TIVFLHQVLPGPASKSYGLAVAALAGLPKEVIARARQILTQLE 782
|
[DNA metabolism, DNA replication, recombination, and repair]. Length = 840 |
| >gnl|CDD|197777 smart00534, MUTSac, ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Score = 300 bits (771), Expect = 9e-97
Identities = 102/196 (52%), Positives = 135/196 (68%), Gaps = 11/196 (5%)
Query: 658 FQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVS 717
IITGPNMGGKST++RQV + ++MAQ+GSFVP + A + V D IF R+GA D +G+S
Sbjct: 1 VVIITGPNMGGKSTYLRQVALIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLS 60
Query: 718 TFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATH 777
TFM EM ETA+ILK AT SL+++DELGRGTSTYDG +A AI E+L+E+I A TLFATH
Sbjct: 61 TFMVEMKETANILKNATKNSLVLLDELGRGTSTYDGLAIAAAILEYLLEKIGARTLFATH 120
Query: 778 FHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAE 837
+HELT LA + GV N H+SA + + +T LYK++PG +S+GI VA+
Sbjct: 121 YHELTKLADNHP---------GVRNLHMSALEE--TENITFLYKLKPGVAGKSYGIEVAK 169
Query: 838 FANFPESVVTLAREKA 853
A P+ V+ A+
Sbjct: 170 LAGLPKEVIERAKRIL 185
|
Length = 185 |
| >gnl|CDD|213251 cd03284, ABC_MutS1, ATP-binding cassette domain of MutS1 homolog | Back alignment and domain information |
|---|
Score = 291 bits (747), Expect = 6e-93
Identities = 113/226 (50%), Positives = 145/226 (64%), Gaps = 13/226 (5%)
Query: 627 ILEGSRHPCVEAQ-DWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQV 685
+EG RHP VE D F+PND +L + +ITGPNM GKST++RQV + L+AQ+
Sbjct: 1 EIEGGRHPVVEQVLDNEPFVPNDTEL-DPERQILLITGPNMAGKSTYLRQVALIALLAQI 59
Query: 686 GSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELG 745
GSFVP +A I V D IF R+GA D G STFM EM+ETA+IL AT+RSL+++DE+G
Sbjct: 60 GSFVPASKAEIGVVDRIFTRIGASDDLAGGRSTFMVEMVETANILNNATERSLVLLDEIG 119
Query: 746 RGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHV 805
RGTSTYDG +AWAI E+L E+I A TLFATH+HELT L + V N+HV
Sbjct: 120 RGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHYHELTELEGKLP---------RVKNFHV 170
Query: 806 SAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLARE 851
+ + L+K+ GA D+S+GI VA A PE V+ ARE
Sbjct: 171 AV--KEKGGGVVFLHKIVEGAADKSYGIEVARLAGLPEEVIERARE 214
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 216 |
| >gnl|CDD|214710 smart00533, MUTSd, DNA-binding domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Score = 283 bits (725), Expect = 3e-88
Identities = 118/328 (35%), Positives = 175/328 (53%), Gaps = 21/328 (6%)
Query: 313 NFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLK 372
SLF L+N T T MGKRLL WL QPLLD+ EIN RLD V+ V++ LRQ LRQ LK
Sbjct: 1 KGSLFELLNHTKTP-MGKRLLRRWLLQPLLDLKEINERLDAVEELVENPELRQKLRQLLK 59
Query: 373 RISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLES 432
RI D+ERL+ +E+ RA + +++LY S L IR L+ +G L+ + L+PL
Sbjct: 60 RIPDLERLLSRIERGRASPRDLLRLYDSLEGLKEIRQLLESLDGPLLGLLLKVILEPLLE 119
Query: 433 LTDDDHLNKFIALVETSVDLDQLE-NGEYMISSSYDTGLSALKNEQESLERQIHSLHKQT 491
L L+E D D LE N +I +D L L+ + E LE ++ L K+
Sbjct: 120 L--------LELLLELLNDDDPLEVNDGGLIKDGFDPELDELREKLEELEEELEELLKKE 171
Query: 492 ASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLK 551
+L + +LKL G+ +TK E K+ K FI + K+ +FT +LK
Sbjct: 172 REELGI---DSLKLGYNKVHGYYIEVTKSEAKKVPKD----FIRRSSLKNTERFTTPELK 224
Query: 552 KLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPT 611
+L ++ + EE + +KE++ +++ + + E ++LA L+ELDVLLS A LA
Sbjct: 225 ELENELLEAKEEIERLEKEILRELLEKVLEYLEELRALAEALAELDVLLSLATLA--AEG 282
Query: 612 PYTRPDINPPDVGDIILEGSRHPCVEAQ 639
Y RP+ + ++ RHP +E Q
Sbjct: 283 NYVRPEFVDSGE--LEIKNGRHPVLELQ 308
|
Length = 308 |
| >gnl|CDD|213210 cd03243, ABC_MutS_homologs, ATP-binding cassette domain of MutS homologs | Back alignment and domain information |
|---|
Score = 252 bits (647), Expect = 1e-78
Identities = 102/215 (47%), Positives = 135/215 (62%), Gaps = 15/215 (6%)
Query: 628 LEGSRHPCVEAQ-DWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVG 686
++G RHP + A F+PND L G+ +ITGPNMGGKST++R +G+ +L+AQ+G
Sbjct: 2 IKGGRHPVLLALTKGETFVPNDINLGSGR--LLLITGPNMGGKSTYLRSIGLAVLLAQIG 59
Query: 687 SFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGR 746
FVP + ASI + D IF R+GA D G STFM E+LE IL AT RSL++IDELGR
Sbjct: 60 CFVPAESASIPLVDRIFTRIGAEDSISDGRSTFMAELLELKEILSLATPRSLVLIDELGR 119
Query: 747 GTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVS 806
GTST +G +A+A+ EHL+E+ TLFATHFHEL L +Q+ GV N H+
Sbjct: 120 GTSTAEGLAIAYAVLEHLLEK-GCRTLFATHFHELADLP---------EQVPGVKNLHME 169
Query: 807 AHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANF 841
I T+ LT YK+ G CD S+ + +AE A
Sbjct: 170 ELI--TTGGLTFTYKLIDGICDPSYALQIAELAGL 202
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 202 |
| >gnl|CDD|213253 cd03286, ABC_MSH6_euk, ATP-binding cassette domain of eukaryotic MutS6 homolog | Back alignment and domain information |
|---|
Score = 225 bits (575), Expect = 4e-68
Identities = 98/223 (43%), Positives = 137/223 (61%), Gaps = 5/223 (2%)
Query: 627 ILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVG 686
E RHPC+ A +F+PND L ++TGPNMGGKST +R V + ++MAQ+G
Sbjct: 1 CFEELRHPCLNASTASSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMG 60
Query: 687 SFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGR 746
VP +S+ D IF R+GA D ++G STFM E+ ETA+IL+ AT SL+I+DELGR
Sbjct: 61 MDVPAKSMRLSLVDRIFTRIGARDDIMKGESTFMVELSETANILRHATPDSLVILDELGR 120
Query: 747 GTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVS 806
GTST+DG+ +A A+ E+LV++++ TLF+TH+H L HE+ M V
Sbjct: 121 GTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEFHEHGG-VRLGHMACA----VK 175
Query: 807 AHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLA 849
D T R +T LYK+ G C +S+G++VA A P+ VV A
Sbjct: 176 NESDPTIRDITFLYKLVAGICPKSYGLYVALMAGIPDGVVERA 218
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 218 |
| >gnl|CDD|213254 cd03287, ABC_MSH3_euk, ATP-binding cassette domain of eukaryotic MutS3 homolog | Back alignment and domain information |
|---|
Score = 218 bits (558), Expect = 1e-65
Identities = 99/230 (43%), Positives = 141/230 (61%), Gaps = 14/230 (6%)
Query: 626 IILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQV 685
I+++ RHP +E+ +F+PND L + QIITGPNMGGKS++IRQV + +MAQ+
Sbjct: 1 ILIKEGRHPMIESLLDKSFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQI 60
Query: 686 GSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELG 745
GSFVP A++S+ D + R+GA D G+STFM E+ ET+ IL T RSL+I+DELG
Sbjct: 61 GSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSNCTSRSLVILDELG 120
Query: 746 RGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHV 805
RGTST+DG +A+A +L+EE + LF TH+ L E F + NYH+
Sbjct: 121 RGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLG----EILRRFEGS----IRNYHM 172
Query: 806 S------AHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLA 849
S S S+ +T LYK+ G +SFG++VA A P+S+++ A
Sbjct: 173 SYLESQKDFETSDSQSITFLYKLVRGLASRSFGLNVARLAGLPKSIISRA 222
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 222 |
| >gnl|CDD|213248 cd03281, ABC_MSH5_euk, ATP-binding cassette domain of eukaryotic MutS5 homolog | Back alignment and domain information |
|---|
Score = 180 bits (459), Expect = 5e-52
Identities = 79/219 (36%), Positives = 122/219 (55%), Gaps = 14/219 (6%)
Query: 627 ILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVG 686
++G RHP +E +F+PND ++ G +ITGPN GKS +++QV + + +A +G
Sbjct: 1 EIQGGRHPLLE-LFVDSFVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIG 59
Query: 687 SFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGR 746
SFVP D A+I + D IF R+ + + G S FM ++ + + L+ AT RSL++IDE G+
Sbjct: 60 SFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATRRSLVLIDEFGK 119
Query: 747 GTSTYDGFGLAWAICEHLVE-EIRAP-TLFATHFHELTALAHENANEFNTKQMVGVANYH 804
GT T DG GL A EHL++ P + +THFHEL N + + +
Sbjct: 120 GTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELF-------NRSLLPERLKIKFLT 172
Query: 805 VSAHID----STSRKLTMLYKVEPGACDQSFGIHVAEFA 839
+ ++ S + +T LY++ PG D SF IH A+ A
Sbjct: 173 MEVLLNPTSTSPNEDITYLYRLVPGLADTSFAIHCAKLA 211
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 213 |
| >gnl|CDD|213249 cd03282, ABC_MSH4_euk, ATP-binding cassette domain of eukaryotic MutS4 homolog | Back alignment and domain information |
|---|
Score = 176 bits (449), Expect = 9e-51
Identities = 83/202 (41%), Positives = 120/202 (59%), Gaps = 16/202 (7%)
Query: 627 ILEGSRHPCVEAQDWV--NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ 684
I+ SRHP + D NFIPND L RG S F IITGPNM GKST+++Q+ + +MAQ
Sbjct: 1 IIRDSRHPIL---DRDKKNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIMAQ 57
Query: 685 VGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDEL 744
+G FVP + A++ + + + +R+ D R +STF EM ETA IL A SL++IDEL
Sbjct: 58 IGCFVPAEYATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYILDYADGDSLVLIDEL 117
Query: 745 GRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYH 804
GRGTS+ DGF ++ AI E L+ + + FATHF ++ A+ N + V + H
Sbjct: 118 GRGTSSADGFAISLAILECLI-KKESTVFFATHFRDIAAIL-GNKS--------CVVHLH 167
Query: 805 VSAHIDSTSRKLTMLYKVEPGA 826
+ A +++ + M YK+ G
Sbjct: 168 MKAQSINSN-GIEMAYKLVLGL 188
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 204 |
| >gnl|CDD|218489 pfam05192, MutS_III, MutS domain III | Back alignment and domain information |
|---|
Score = 178 bits (454), Expect = 3e-50
Identities = 98/313 (31%), Positives = 157/313 (50%), Gaps = 28/313 (8%)
Query: 295 SAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIV 354
+A +R L + + K SL GL++RT T MGKRLL WL +PL D++EINARLD V
Sbjct: 1 AATLRNLELFRN-LRGGKKGSLLGLLDRTVTP-MGKRLLRRWLLRPLTDLDEINARLDAV 58
Query: 355 QAFVDDTALRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQY 414
+ ++D LR++LR+ LK I D+ERL+ L RA + ++ L S LP +R L
Sbjct: 59 EELLED--LREELREALKGIPDLERLLSRLALGRASPRDLLALRSSLEALPALRKLLAS- 115
Query: 415 EGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLD---QLENGEYMISSSYDTGLS 471
L L D L + + L+E ++D D L +G +I YD L
Sbjct: 116 ------------APLLADLADQLPLPELLELLERAIDEDPPLSLRDGG-VIKDGYDPELD 162
Query: 472 ALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTT 531
L+ + L ++ L ++ + K+LK+ FG+ K K+
Sbjct: 163 ELRALLDELREKLAELLERERERTGI---KSLKVGYNRVFGYYVIEVKAS---KADKVPG 216
Query: 532 QFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAV-TFSEIFKSLA 590
+I T K+ V+FT +LK+L + + E +KE++ +++ + ++E+ + LA
Sbjct: 217 DYIRRSTTKNAVRFTTPELKELERKLLEAEERALALEKEILEELLERVLSEYAELLQELA 276
Query: 591 TMLSELDVLLSFA 603
++ELDVLLS A
Sbjct: 277 DAIAELDVLLSLA 289
|
This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with pfam00488, pfam05188, pfam01624 and pfam05190. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. The aligned region corresponds with domain III, which is central to the structure of Thermus aquaticus MutS as characterized in. Length = 290 |
| >gnl|CDD|213250 cd03283, ABC_MutS-like, ATP-binding cassette domain of MutS-like homolog | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 3e-28
Identities = 57/208 (27%), Positives = 93/208 (44%), Gaps = 20/208 (9%)
Query: 632 RHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPC 691
HP + + V ND + K +ITG NM GKSTF+R +GVN+++AQ G+ V
Sbjct: 6 GHPLIGREKRVA---NDIDM--EKKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCA 60
Query: 692 DRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDR--SLIIIDELGRGTS 749
+ IF + D G+S F E+ I++ A L ++DE+ +GT+
Sbjct: 61 SSFELPPVK-IFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKGEPVLFLLDEIFKGTN 119
Query: 750 TYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAHI 809
+ + + A+ + L + + +TH EL L ++ V NYH I
Sbjct: 120 SRERQAASAAVLKFLKNK-NTIGIISTHDLELADLLDLDSA---------VRNYHFREDI 169
Query: 810 DSTSRKLTMLYKVEPGACDQSFGIHVAE 837
D KL YK++PG + + +
Sbjct: 170 DDN--KLIFDYKLKPGVSPTRNALRLMK 195
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 199 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 8e-28
Identities = 57/198 (28%), Positives = 74/198 (37%), Gaps = 50/198 (25%)
Query: 628 LEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA---- 683
+ R P F+PND G IITGPN GKST + +G+ + A
Sbjct: 2 IVLGRFPS-------YFVPNDVTFGEGS--LTIITGPNGSGKSTILDAIGLALGGAQSAT 52
Query: 684 ------QVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGAT--D 735
+ G V A + IF R+ S +E+ A IL A+
Sbjct: 53 RRRSGVKAGCIVAAVSAEL-----IFTRLQL--------SGGEKELSALALILALASLKP 99
Query: 736 RSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTK 795
R L I+DE+ RG DG LA AI EHLV+ A + TH EL LA
Sbjct: 100 RPLYILDEIDRGLDPRDGQALAEAILEHLVK--GAQVIVITHLPELAELA---------- 147
Query: 796 QMVGVANYHVSAHIDSTS 813
H+ I
Sbjct: 148 ----DKLIHIKKVITGVY 161
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|213247 cd03280, ABC_MutS2, ATP-binding cassette domain of MutS2 | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 7e-27
Identities = 65/179 (36%), Positives = 95/179 (53%), Gaps = 14/179 (7%)
Query: 628 LEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGS 687
L +RHP + Q +P D +L K +ITGPN GGK+ ++ +G+ LMAQ G
Sbjct: 2 LREARHPLLPLQG-EKVVPLDIQLGENKRVL-VITGPNAGGKTVTLKTLGLLTLMAQSGL 59
Query: 688 FVPCD-RASISVRDCIFARVGAGDCQ--LRGVSTFMQEMLETASILKGATDRSLIIIDEL 744
+P +S+ V + IFA +G D Q + +STF M A IL+ A SL+++DEL
Sbjct: 60 PIPAAEGSSLPVFENIFADIG--DEQSIEQSLSTFSSHMKNIARILQHADPDSLVLLDEL 117
Query: 745 GRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENAN------EFNTKQM 797
G GT +G LA AI E L+ E A + TH+ EL A A++ EF+ + +
Sbjct: 118 GSGTDPVEGAALAIAILEELL-ERGALVIATTHYGELKAYAYKREGVENASMEFDPETL 175
|
MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 200 |
| >gnl|CDD|216613 pfam01624, MutS_I, MutS domain I | Back alignment and domain information |
|---|
Score = 93.0 bits (232), Expect = 2e-22
Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 13/116 (11%)
Query: 20 GFLSFYKTLPN-DTRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLGTGSDALSSV 78
+ Y L + AV FF D+Y GE+A A+ T T R G+G +
Sbjct: 2 PMMRQYLELKSKYPDAVLFFRVGDFYELFGEDAEIAARELGITLTV-RGGGSGKR-IPMA 59
Query: 79 SVSKNMFETIARDLLLERTDHTLELYEGSGS--------NWRLVKSGTPGNLGSYE 126
V ++ FET R L+ + + + + E + +V+ TPG L E
Sbjct: 60 GVPEHAFETYLRRLVNK--GYKVAICEQTEDPAEAKGVVKREVVRVITPGTLTDEE 113
|
This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with pfam00488, pfam05188, pfam05192 and pfam05190. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. The aligned region corresponds with globular domain I, which is involved in DNA binding, in Thermus aquaticus MutS as characterized in. Length = 113 |
| >gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 5e-22
Identities = 94/332 (28%), Positives = 144/332 (43%), Gaps = 39/332 (11%)
Query: 534 IVLETRKDGVKF---------TNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSE 584
IV +T G F N KL +L ++ + E K + L +V + +
Sbjct: 206 IVHDTSSSGETFYIEPQAIVKLNNKLAQLKNEEEC--EIEKILRT-LSEKVQEYLLELKF 262
Query: 585 IFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNF 644
+FK LD L A + P + G IILE +RHP ++
Sbjct: 263 LFKEF----DFLDSL--QARARYAKAVKGEFPMPS--FTGKIILENARHPLLK---EPKV 311
Query: 645 IPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRAS-ISVRDCIF 703
+P L K ITGPN GGK+ ++ +G+ LM Q G +P + S I + IF
Sbjct: 312 VPFTLNLKFEKRVL-AITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEIF 370
Query: 704 ARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEH 763
A +G + +STF M ++IL T+ SL++ DELG GT +G LA +I E+
Sbjct: 371 ADIGDEQSIEQNLSTFSGHMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEY 430
Query: 764 LVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVE 823
L+ + A L TH+ EL AL + N GV N V ++ S +L +
Sbjct: 431 LL-KQNAQVLITTHYKELKALMYNNE---------GVENASVLFDEETLSPTYKLLKGI- 479
Query: 824 PGACDQSFGIHVAEFANFPESVVTLAREKAAE 855
PG +S+ +A+ P ++ A+ E
Sbjct: 480 PG---ESYAFEIAQRYGIPHFIIEQAKTFYGE 508
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function [DNA metabolism, Other]. Length = 771 |
| >gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Score = 95.3 bits (238), Expect = 5e-20
Identities = 81/251 (32%), Positives = 121/251 (48%), Gaps = 29/251 (11%)
Query: 547 NTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLA 606
N ++++L ++ ++ +E KEL +V + + K L + ELD + + A A
Sbjct: 233 NNEIRELRNKEEQEIERI---LKELSAKVAKNL----DFLKFLNKIFDELDFIFARARYA 285
Query: 607 SSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNM 666
+ T P N D G I L +RHP D +P D L K+ +ITGPN
Sbjct: 286 KA--LKATFPLFN--DEGKIDLRQARHP---LLDGEKVVPKDISLGFDKTVL-VITGPNT 337
Query: 667 GGKSTFIRQVGVNILMAQVGSFVPC-DRASISVRDCIFARVGAGDCQ-----LRGVSTFM 720
GGK+ ++ +G+ LMA+ G +P + + I V IFA + GD Q L STF
Sbjct: 338 GGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKEIFADI--GDEQSIEQSL---STFS 392
Query: 721 QEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFA-THFH 779
M IL+ A SL++ DELG GT +G LA +I E+L + R + A TH+
Sbjct: 393 GHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRK--RGAKIIATTHYK 450
Query: 780 ELTALAHENAN 790
EL AL +
Sbjct: 451 ELKALMYNREG 461
|
Length = 782 |
| >gnl|CDD|224114 COG1193, COG1193, Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 3e-19
Identities = 83/265 (31%), Positives = 122/265 (46%), Gaps = 28/265 (10%)
Query: 534 IVLETRKDGVKFTN--TKLKKLGDQYQKVL----EEYKNCQKELVNRVIQTAVTFSEIFK 587
IV +T G + KL ++ + +L EE + +EL V +
Sbjct: 203 IVHDTSSSGATLYIEPRSVVKLNNELRALLVEEDEEEERILRELSALVAP----VIPELE 258
Query: 588 SLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPN 647
L ++ ELD + + A +PD + + G + L +RHP ++ +PN
Sbjct: 259 ILLEIIGELDFIEAKVRYAK--ALKGVKPDFS--NDGVLELLDARHPLLKED-----VPN 309
Query: 648 DCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRAS-ISVRDCIFARV 706
D +L IITGPN GGK+ ++ +G+ LMAQ G +P S + V IFA
Sbjct: 310 DLELGEELDRL-IITGPNTGGKTVTLKTLGLLRLMAQSGLPIPALEGSELPVFVKIFA-- 366
Query: 707 GAGDCQL--RGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHL 764
GD Q + +STF M IL+ A SL++ DELG GT +G LA AI E L
Sbjct: 367 DIGDEQSIEQSLSTFSSHMTNIVEILEKAD--SLVLFDELGSGTDPDEGAALAIAILEDL 424
Query: 765 VEEIRAPTLFATHFHELTALAHENA 789
+E+ + TH+ EL ALA E
Sbjct: 425 LEKPAK-IVATTHYRELKALAAERE 448
|
Length = 753 |
| >gnl|CDD|218487 pfam05190, MutS_IV, MutS family domain IV | Back alignment and domain information |
|---|
Score = 75.3 bits (186), Expect = 1e-16
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
Query: 466 YDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKI 525
+D L L++ E LE ++ L + L + K+LK+ FG+ +T+ E K+
Sbjct: 2 FDEELDELRDLLEELESELDELLAKERERLGI---KSLKVGYNKVFGYYIEVTRSEAKKV 58
Query: 526 RKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEE 563
K +I +T K+GV+FT +LKKL D+ + EE
Sbjct: 59 PK----DYIRRQTLKNGVRFTTPELKKLEDELLEAEEE 92
|
This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with pfam01624, pfam05188, pfam05192 and pfam00488. The mutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. The aligned region corresponds in part with globular domain IV, which is involved in DNA binding, in Thermus aquaticus MutS as characterized in. Length = 92 |
| >gnl|CDD|218486 pfam05188, MutS_II, MutS domain II | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 5e-13
Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 15/139 (10%)
Query: 140 VIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPT-- 197
+ A+ R +G GL ++DL+ G++EF D F + + L L KE LLP
Sbjct: 2 YLAAIS---RGDGNRYGLAFLDLSTGEFGVSEFED---FEELLAELSRLSPKELLLPESL 55
Query: 198 EAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVRGSVEPVRDL-VSGFEI 256
+ +E + L + R G T + E DL +D VE + + +
Sbjct: 56 SSSTVAESQKLLELRLRVGRRPTWLFELEHAYEDLNEDF------GVEDLDGFGLEELPL 109
Query: 257 APGALGALLSYAELLSDES 275
A A GAL+SY + E+
Sbjct: 110 ALCAAGALISYLKETQKEN 128
|
This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with pfam00488, pfam01624, pfam05192 and pfam05190. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. This domain corresponds to domain II in Thermus aquaticus MutS as characterized in, and has similarity resembles RNAse-H-like domains (see pfam00075). Length = 133 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 3e-09
Identities = 27/134 (20%), Positives = 44/134 (32%), Gaps = 20/134 (14%)
Query: 658 FQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVS 717
+ GPN GKST +R + + I + A++ + R +
Sbjct: 27 IVALVGPNGSGKSTLLRAIAG---------LLKPTSGEILIDGKDIAKLPLEE-LRRRIG 76
Query: 718 TFMQ------EMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAP 771
Q + + A L + L+++DE G L + E E
Sbjct: 77 YVPQLSGGQRQRVALARAL--LLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRT-- 132
Query: 772 TLFATHFHELTALA 785
+ TH EL LA
Sbjct: 133 VIIVTHDPELAELA 146
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 888 | |||
| COG0249 | 843 | MutS Mismatch repair ATPase (MutS family) [DNA rep | 100.0 | |
| TIGR01070 | 840 | mutS1 DNA mismatch repair protein MutS. | 100.0 | |
| PRK05399 | 854 | DNA mismatch repair protein MutS; Provisional | 100.0 | |
| KOG0219 | 902 | consensus Mismatch repair ATPase MSH2 (MutS family | 100.0 | |
| KOG0217 | 1125 | consensus Mismatch repair ATPase MSH6 (MutS family | 100.0 | |
| KOG0218 | 1070 | consensus Mismatch repair MSH3 [Replication, recom | 100.0 | |
| KOG0220 | 867 | consensus Mismatch repair ATPase MSH4 (MutS family | 100.0 | |
| KOG0221 | 849 | consensus Mismatch repair ATPase MSH5 (MutS family | 100.0 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 100.0 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 100.0 | |
| PF00488 | 235 | MutS_V: MutS domain V C-terminus.; InterPro: IPR00 | 100.0 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 100.0 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 100.0 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 100.0 | |
| smart00533 | 308 | MUTSd DNA-binding domain of DNA mismatch repair MU | 100.0 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 100.0 | |
| COG1193 | 753 | Mismatch repair ATPase (MutS family) [DNA replicat | 100.0 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 100.0 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 100.0 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 100.0 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 100.0 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 100.0 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 100.0 | |
| PF01624 | 113 | MutS_I: MutS domain I C-terminus.; InterPro: IPR00 | 99.95 | |
| PF05192 | 204 | MutS_III: MutS domain III C-terminus.; InterPro: I | 99.95 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.86 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 99.85 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 99.84 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 99.82 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 99.82 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 99.82 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 99.82 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 99.81 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 99.81 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 99.81 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 99.78 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 99.78 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 99.77 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 99.77 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 99.77 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 99.77 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 99.76 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 99.76 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 99.76 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 99.76 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 99.76 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 99.76 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 99.76 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 99.75 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 99.75 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 99.75 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 99.75 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 99.75 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 99.75 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 99.75 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 99.75 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 99.74 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 99.74 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 99.74 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 99.74 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 99.74 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 99.74 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 99.74 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 99.74 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 99.74 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 99.74 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 99.74 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 99.74 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 99.74 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 99.74 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 99.74 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 99.74 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 99.73 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 99.73 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 99.73 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 99.73 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.73 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 99.73 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 99.73 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 99.73 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 99.73 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 99.73 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 99.73 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 99.73 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.73 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 99.73 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 99.73 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 99.72 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.72 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 99.72 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 99.72 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 99.72 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.72 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 99.72 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 99.72 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 99.72 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 99.72 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.72 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 99.72 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 99.72 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 99.72 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 99.72 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 99.72 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 99.72 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 99.72 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.72 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 99.72 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 99.72 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 99.72 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 99.72 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 99.72 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 99.71 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 99.71 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 99.71 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 99.71 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 99.71 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 99.71 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.71 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 99.71 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 99.71 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 99.71 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 99.71 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 99.71 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 99.71 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 99.71 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.71 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 99.71 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 99.71 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 99.71 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 99.71 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 99.71 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 99.71 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 99.71 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.71 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 99.71 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 99.71 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 99.71 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.71 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 99.71 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 99.71 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 99.71 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 99.71 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.7 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 99.7 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 99.7 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 99.7 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 99.7 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.7 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 99.7 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 99.7 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 99.7 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 99.7 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.7 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 99.7 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.7 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 99.7 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 99.7 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 99.7 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 99.7 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 99.7 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 99.7 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 99.7 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 99.7 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 99.7 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 99.7 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 99.7 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.7 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 99.7 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 99.69 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 99.69 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 99.69 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 99.69 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 99.69 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.69 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 99.69 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 99.69 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 99.69 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 99.69 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 99.69 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.69 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 99.69 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 99.69 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 99.69 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 99.69 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 99.69 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 99.69 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 99.69 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 99.68 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 99.68 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 99.68 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 99.68 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 99.68 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 99.68 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 99.68 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 99.68 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 99.68 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 99.68 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 99.68 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 99.68 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.68 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.68 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.68 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 99.68 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.68 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.68 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 99.68 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 99.68 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.68 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 99.68 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 99.67 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 99.67 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 99.67 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 99.67 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 99.67 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 99.67 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 99.67 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 99.67 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 99.67 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 99.67 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 99.67 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 99.67 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 99.67 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 99.67 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 99.67 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 99.67 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.67 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 99.66 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 99.66 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 99.66 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 99.66 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 99.66 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 99.66 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 99.66 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 99.66 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 99.66 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 99.66 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 99.66 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 99.66 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 99.66 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.66 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 99.66 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 99.65 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.65 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.65 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 99.65 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 99.65 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 99.65 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 99.65 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 99.65 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.65 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.65 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 99.65 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 99.65 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 99.65 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 99.65 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.65 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 99.65 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 99.65 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 99.65 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 99.65 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 99.65 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 99.64 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 99.64 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.64 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.64 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.64 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 99.64 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.64 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 99.64 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 99.64 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 99.64 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 99.64 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 99.64 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.64 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 99.64 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 99.64 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 99.64 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 99.63 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 99.63 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.63 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 99.63 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 99.63 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 99.63 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 99.63 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.63 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 99.62 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.62 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.62 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.62 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 99.62 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 99.62 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.62 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.62 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 99.61 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.61 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.61 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 99.61 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 99.61 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.61 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 99.61 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 99.61 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.61 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 99.61 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.6 | |
| PF05188 | 137 | MutS_II: MutS domain II; InterPro: IPR007860 Misma | 99.6 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.6 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 99.6 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 99.6 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 99.59 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.59 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 99.59 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 99.58 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 99.58 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.58 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.58 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.58 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 99.57 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 99.57 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.57 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.56 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 99.56 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.56 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 99.55 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 99.55 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.55 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.55 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.55 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.54 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 99.54 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.54 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 99.54 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 99.54 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.54 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 99.54 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.53 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 99.53 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 99.53 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.53 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 99.52 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 99.52 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 99.52 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 99.52 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 99.52 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 99.52 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 99.52 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 99.51 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 99.51 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 99.51 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.51 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 99.5 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 99.5 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 99.5 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 99.5 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 99.5 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 99.5 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.5 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 99.49 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 99.49 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.49 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.48 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 99.48 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.47 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.46 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 99.46 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 99.46 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 99.45 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.45 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.45 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 99.44 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 99.44 | |
| PF05190 | 92 | MutS_IV: MutS family domain IV C-terminus.; InterP | 99.44 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.42 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.42 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.41 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.41 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.41 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.4 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.39 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 99.39 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 99.39 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 99.38 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.37 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.37 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 99.37 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.37 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.36 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.35 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.34 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 99.34 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 99.32 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.31 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.3 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 99.3 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 99.29 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 99.28 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.28 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 99.27 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.26 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.25 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.24 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.24 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.23 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.23 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.23 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 99.22 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.22 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.22 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.2 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.19 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.17 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.16 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.13 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.1 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.09 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 99.04 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.03 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 98.99 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 98.95 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 98.93 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 98.91 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 98.91 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 98.91 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 98.91 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 98.9 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 98.82 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 98.8 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 98.78 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 98.75 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 98.75 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 98.7 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 98.67 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 98.66 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 98.62 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 98.53 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 98.52 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 98.41 | |
| PF13304 | 303 | AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T | 98.29 | |
| PRK13695 | 174 | putative NTPase; Provisional | 98.28 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 98.27 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 98.22 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 98.16 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 98.12 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 98.12 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 98.08 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 98.05 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 98.01 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 97.98 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 97.91 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 97.89 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 97.81 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 97.69 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 97.68 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 97.68 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 97.67 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 97.63 | |
| KOG0219 | 902 | consensus Mismatch repair ATPase MSH2 (MutS family | 97.63 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 97.61 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.58 | |
| PRK09183 | 259 | transposase/IS protein; Provisional | 97.57 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 97.55 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 97.52 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 97.51 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 97.49 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.47 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.45 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.4 | |
| COG3854 | 308 | SpoIIIAA ncharacterized protein conserved in bacte | 97.39 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 97.37 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 97.35 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 97.31 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 97.29 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 97.29 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 97.29 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.28 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.27 | |
| PRK06526 | 254 | transposase; Provisional | 97.27 | |
| cd01121 | 372 | Sms Sms (bacterial radA) DNA repair protein. This | 97.25 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 97.24 | |
| PRK06921 | 266 | hypothetical protein; Provisional | 97.22 | |
| PTZ00454 | 398 | 26S protease regulatory subunit 6B-like protein; P | 97.22 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 97.22 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.19 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 97.18 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 97.18 | |
| cd01123 | 235 | Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r | 97.18 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 97.17 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 97.15 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 97.15 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 97.15 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 97.14 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 97.13 | |
| PRK11823 | 446 | DNA repair protein RadA; Provisional | 97.11 | |
| TIGR00416 | 454 | sms DNA repair protein RadA. The gene protuct code | 97.1 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 97.08 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 97.07 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 97.07 | |
| cd01393 | 226 | recA_like RecA is a bacterial enzyme which has rol | 97.05 | |
| PTZ00293 | 211 | thymidine kinase; Provisional | 97.05 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 97.04 | |
| PRK12377 | 248 | putative replication protein; Provisional | 97.02 |
| >COG0249 MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-156 Score=1391.22 Aligned_cols=789 Identities=34% Similarity=0.503 Sum_probs=710.9
Q ss_pred hhccccHHHHHhcCCCC-CCeEEEEecCceeeehhhhHHHHHHHhhhhhhhhhccCCCCCCCceeecCHHHHHHHHHHHH
Q 002722 15 AKQARGFLSFYKTLPND-TRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLGTGSDALSSVSVSKNMFETIARDLL 93 (888)
Q Consensus 15 ~~~~t~~~~qy~~ik~~-~d~ilffr~GdFYe~f~eDA~~~a~~l~~~~~~l~~~~~~~~~~p~~gvp~~~~~~yl~~Lv 93 (888)
.+..||||+|||+||++ |||+||||||||||+|++||..+|++|+++ ||.|+. +||||||+|+++.|+.+||
T Consensus 3 ~~~~tP~m~qy~~ik~~~~d~llffr~GdfYelf~~DA~~~s~~l~it---lT~r~~----~pm~gvP~h~~~~yl~~li 75 (843)
T COG0249 3 KAKLTPMMQQYLEIKAQYPDTLLFFRMGDFYELFFEDAKIAARLLDIT---LTKRGN----IPMAGVPYHALDYYLAKLI 75 (843)
T ss_pred cccCCcHHHHHHHHHHhCCccEEEEecccchhhhHHHHHHHHHhhCce---eecCCC----CcCCCCccccHHHHHHHHH
Confidence 35689999999999999 999999999999999999999999999999 667764 9999999999999999999
Q ss_pred hhcCCeEEEEEeccC--------CcceeEEecCCCCccccccccccCCCCCCCcEEEEEeeccccCCceEEEEEEecCCc
Q 002722 94 LERTDHTLELYEGSG--------SNWRLVKSGTPGNLGSYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKR 165 (888)
Q Consensus 94 ~~~G~ykVai~eQ~e--------~~R~v~rviTPGt~~~~ed~l~~~~~~~~~~yl~aI~~~~~~~~~~iGla~~D~stG 165 (888)
++| ||||||||.| ++|+|+|++||||++ ++.++ +...+||++|+..... ..+|+||+|+|||
T Consensus 76 -~~g-~kVAiceQ~e~~~~~k~~v~R~v~rv~TpGt~~--d~~~l---~~~~~n~l~a~~~~~~---~~~gla~~dlstG 145 (843)
T COG0249 76 -ELG-YKVAICEQLEDPAEAKGVVERKVVRVVTPGTLT--DEALL---SDRENNYLAALAIDRD---GKVGLAFIDLSTG 145 (843)
T ss_pred -hCC-CeEEEEEcccChhhhcCcceeEEEEEECCCeee--ccccc---cccccceEEEEEecCC---CEEEEEEEEcccC
Confidence 899 9999999998 589999999999984 56666 2358999999985421 2799999999999
Q ss_pred eEEEEEecCchhHHHHHHHHHccCccEEEecCCCCCChhhHHHHHHhhhcCceeeecccccccchhHHHHHHHhhcCCCC
Q 002722 166 VLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVRGSVE 245 (888)
Q Consensus 166 e~~~~ef~D~~~~~~L~t~L~~~~P~EIli~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~F~~~~~~~~l~~~~~~~~~ 245 (888)
+|++++|. ++.+.+.|.+++|+|||++.+..... +.... ..+.+...+.+.|....+...+..++. ..+
T Consensus 146 ef~~~~~~----~~~l~~~l~r~~p~Eil~~~~~~~~~----~~~~~--~~~~~~~~~~~~f~~~~~~~~l~~~~~-~~~ 214 (843)
T COG0249 146 EFFVSEFE----REKLLSELKRLQPKELLLSESLLSST----LAEIQ--KGLFVVRLPASFFDEDDAEEILSEYFG-VRD 214 (843)
T ss_pred eEEEEEee----HHHHHHHHHhCCCcEEEeccccCchh----hhhhh--hceeeeecchhhcCccHHHHHHHHHhC-ccc
Confidence 99999997 67899999999999999998632211 11111 122456778899998888888988886 455
Q ss_pred CcccccCCcccHHHHHHHHHHHHHHHcCcCCCCCceeEEecccccccccHHHHHhhcccccCCCCCCcCcHHHHhhhhcC
Q 002722 246 PVRDLVSGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCT 325 (888)
Q Consensus 246 ~~~~~~~~~~~a~~AlgaLL~YL~~~~~~~~~~~~~~~~~~~~~~M~LD~~Tl~~LEI~~n~~~~~~~gSLf~lLn~~t~ 325 (888)
+.+++....+.+++|+|+|+.|++.++.....+...+..+...++|.||.+|++||||++|.++++++||||++||+ |+
T Consensus 215 l~~~~~~~~~~~~~a~~~ll~Y~~~t~~~~l~~~~~~~~~~~~~~m~lD~~t~~nLEl~~~~~~~~~~gSL~~~ld~-t~ 293 (843)
T COG0249 215 LDGFGLISTPLALSAAGALLSYLKDTQKTFLPHIQIIQRYDLEDYMVLDAATRRNLELFSNLRGNGKKGSLFWLLDR-TV 293 (843)
T ss_pred ccccccccchHHHHHHHHHHHHHHHhhhccccccccceeeccCcEEEEcHHHHhcccccccCCCCCCCCcHHHHhcc-CC
Confidence 66666666688999999999999988865556666788889999999999999999999999887888999999999 99
Q ss_pred CchHHHHHHHHhcCcCCCHHHHHHHHHHHHHHHhChHHHHHHHHHhccCCCHHHHHHHHHhccccHHHHHHHHHHHHHHH
Q 002722 326 AGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLP 405 (888)
Q Consensus 326 T~~GkRlLr~WL~~PL~d~~~I~~R~daVe~l~~~~~l~~~lr~~Lk~i~DleRll~ri~~~~~~~~dl~~l~~~l~~~~ 405 (888)
|+||+|+|++||.+||+|.++|+.|||+|++|..+..+++.++..|+++||+||+++|+..++++++|+.++++++..++
T Consensus 294 T~mG~RlL~~wl~~PL~~~~~I~~Rld~Ve~l~~~~~l~~~L~~~L~~v~DleRl~~Rl~~~~~~~rDl~~l~~~l~~~~ 373 (843)
T COG0249 294 TPMGSRLLKRWLLQPLLDKEEIEERLDAVEELKDNPELREKLREMLKKVPDLERLLSRLSLGRASPRDLLRLRDSLEKIP 373 (843)
T ss_pred CchhHHHHHHHhhCcccCHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCcCHHHHHHHHHcCCCChhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcchhhhhhHhhHhhhhhccCCchHHHHHHHHHhhccCccccCC-cccccCCCCHhHHHHHHHHHHHHHHH
Q 002722 406 YIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENG-EYMISSSYDTGLSALKNEQESLERQI 484 (888)
Q Consensus 406 ~i~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~l~~l~~~i~~~id~~~~~~~-~~~i~~~~d~~Ld~lr~~~~~~~~~l 484 (888)
.+...+....... .+ ......+. .+ +.+.++..+++.++..+.+... .++|+.||+++||++|..+++.++++
T Consensus 374 ~i~~~l~~~~~~~--~l-~~~~~~i~-~~--~~~~e~~~ll~~~i~~~~~~~~~~~ii~~g~~~eLd~lr~~~~~~~~~i 447 (843)
T COG0249 374 EIFKLLSSLKSES--DL-LLLLEDIE-SL--DYLAELLELLETAINEDPPLAVRDGIIKEGYNIELDELRDLLNNAKEWI 447 (843)
T ss_pred HHHHHHhccccch--hh-hHHhhhhh-cc--ccHHHHHHHHHHHhhhcchhhcchhHHhcchhHHHHHHHHHHHHHHHHH
Confidence 9999988743110 01 11112222 22 3366888999999988876322 28999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCcccceeeeecceeeEEEEEecCCccccccccCccEEEEEEecceEEEEChhHHHHHHHHHHHHHHH
Q 002722 485 HSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEY 564 (888)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~l~~~~~~~~gy~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~~l~~~~~~~~~~~ 564 (888)
.+++.++++++|++ ++|+.|++.+|||++|++...+.+| .+ |++++++++..||+|+++++++.++.++++++
T Consensus 448 ~~le~~~r~~~gi~---slki~~n~v~Gy~ievt~~~~~~~p--~~--~ir~qt~kn~~rf~t~el~~~e~~i~~a~~~i 520 (843)
T COG0249 448 AKLELEERERTGIK---SLKIKYNKVYGYYIEVTKSNAKLVP--DD--YIRRQTLKNAERFTTPELKELEEKLLDAEEKI 520 (843)
T ss_pred HHHHHHHHHhcCCc---hhhhhhhccceeEEEechhccccCc--hH--HHHHHHHhcceEecCHHHHHHHHHHHHHHHHH
Confidence 99999999999997 7999999999999999998888877 33 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHhcCCCCCCCCccCCCCCccEEEEcCcCceeeeccCccc
Q 002722 565 KNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNF 644 (888)
Q Consensus 565 ~~~~~~i~~~l~~~~~~~~~~l~~~~~~ia~lD~l~s~A~~a~~~~~~~~rP~~~~~~~~~l~i~~~rhp~~~~~~~~~~ 644 (888)
..+|.+++.++++.+..|.+.|+.++.++|+|||++|||..|.. .+||||+|+++.. +.|++||||++|...+..|
T Consensus 521 ~~lE~~l~~~~~~~i~~~~~~l~~~a~aLa~lD~l~slA~~a~~--~~y~rP~~~~~~~--l~i~~gRHPvvE~~~~~~f 596 (843)
T COG0249 521 LALEYELFDELREKILAHINELQALAKALAELDVLSSLAEIAAE--QNYVRPEFVDSND--LEIKEGRHPVVEAVLDNGF 596 (843)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--CCCCCceecCCCC--EEEEecCcchhhhhccCCc
Confidence 99999999999999999999999999999999999999999975 7999999998643 9999999999998765559
Q ss_pred ccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhcCcccccccccccHHHHHHHhcCCchhhhhccchhHHHHH
Q 002722 645 IPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEML 724 (888)
Q Consensus 645 v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~g~~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~ 724 (888)
||||+.++. .+++++|||||||||||||||+|++++|||+||||||+++.++++|+||+|+|+.|++..|.||||+||.
T Consensus 597 VpNd~~L~~-~~~i~lITGPNM~GKSTylRQvali~imAQiGsfVPA~~A~i~ivD~IfTRiGa~DDL~~G~STFMvEM~ 675 (843)
T COG0249 597 VPNDIDLSG-NRRIILITGPNMGGKSTYLRQVALIVILAQIGSFVPAEKARIGIVDRIFTRIGAADDLASGRSTFMVEML 675 (843)
T ss_pred ccCceeeCC-CceEEEEECCCCCccHHHHHHHHHHHHHHHcCCCeeHHHccccccceeeecccccchhhccccHHHHHHH
Confidence 999999984 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhhccccccccccccEeEEE
Q 002722 725 ETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYH 804 (888)
Q Consensus 725 ~~~~il~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~~~~~~~~~~~~~v~~~~ 804 (888)
+++.|+++|+++|||||||.||||++.||.+|||++++||++..+|.+||+|||+|++++... .+.+.|+|
T Consensus 676 Eta~IL~~AT~~SLvilDEiGRGTsT~DGlaIA~Av~eyL~~~~~~~tLFATHy~ELt~l~~~---------~~~v~N~h 746 (843)
T COG0249 676 ETANILDNATERSLVILDEIGRGTSTYDGLAIAWAVLEYLHEKIGCRTLFATHYHELTELEEK---------LPQVKNYH 746 (843)
T ss_pred HHHHHHHhCCCCcEEEEecccCCCCcchhHHHHHHHHHHHHhccCceEEEeccHHHHHHhhhc---------ccccceeE
Confidence 999999999999999999999999999999999999999998669999999999999999988 89999999
Q ss_pred EEEEEEcCCCcEEEeEEecCCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCC
Q 002722 805 VSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFTP 861 (888)
Q Consensus 805 ~~~~~~~~~~~~~~~y~l~~G~~~~s~gi~vA~~aglp~~vi~~A~~~~~~le~~~~ 861 (888)
|.+.+. ++.++|+|++.+|+|++||||+||++||+|.+||+||++++.+||+...
T Consensus 747 ~~~~e~--~~~i~Fl~kv~~G~a~~SyGi~VAklaGlP~~Vi~rA~~il~~le~~~~ 801 (843)
T COG0249 747 MSAVEE--GGDITFLYKVKPGIADKSYGIHVAKLAGLPEEVIERAREILAELEKESR 801 (843)
T ss_pred EEEEEc--CCceEEEEEeccCCCCccHHHHHHHHhCCCHHHHHHHHHHHHHHhhccc
Confidence 998877 6779999999999999999999999999999999999999999998775
|
|
| >TIGR01070 mutS1 DNA mismatch repair protein MutS | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-152 Score=1373.70 Aligned_cols=773 Identities=30% Similarity=0.466 Sum_probs=685.6
Q ss_pred cccHHHHHhcCCCC-CCeEEEEecCceeeehhhhHHHHHHHhhhhhhhhhccCCC-CCCCceeecCHHHHHHHHHHHHhh
Q 002722 18 ARGFLSFYKTLPND-TRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLGTG-SDALSSVSVSKNMFETIARDLLLE 95 (888)
Q Consensus 18 ~t~~~~qy~~ik~~-~d~ilffr~GdFYe~f~eDA~~~a~~l~~~~~~l~~~~~~-~~~~p~~gvp~~~~~~yl~~Lv~~ 95 (888)
.||||+|||+||++ |||||||||||||||||+||.+||++|+++ ||.|++. ..++||||||+|+++.|+++|| +
T Consensus 1 ~TPm~~Qy~~iK~~~~D~iLffr~GdFYElf~eDA~~~a~~L~i~---lt~r~~~~~~~~pm~GvP~ha~~~yl~kLv-~ 76 (840)
T TIGR01070 1 LTPMMQQYLKLKAEHPDALLFFRMGDFYELFYEDAKKAAQLLDIS---LTSRGQSADEPIPMAGIPYHAVEAYLEKLV-K 76 (840)
T ss_pred CCHHHHHHHHHHHhCCCEEEEEEcCCEEEEehhhHHHHHHHhCeE---EeecCCCCCCCCCcccCCHHHHHHHHHHHH-H
Confidence 48999999999999 999999999999999999999999999999 5667643 3579999999999999999998 9
Q ss_pred cCCeEEEEEeccC--------CcceeEEecCCCCccccccccccCCCCCCCcEEEEEeeccccCCceEEEEEEecCCceE
Q 002722 96 RTDHTLELYEGSG--------SNWRLVKSGTPGNLGSYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKRVL 167 (888)
Q Consensus 96 ~G~ykVai~eQ~e--------~~R~v~rviTPGt~~~~ed~l~~~~~~~~~~yl~aI~~~~~~~~~~iGla~~D~stGe~ 167 (888)
+| ||||||||+| ++|+|+||+||||+. ++.++ +..++|||+||... ...+|+||+|+|||+|
T Consensus 77 ~G-~kVai~eQ~e~~~~~kg~v~Rev~ri~TpGT~~--~~~~l---~~~~~nyl~ai~~~----~~~~gla~~D~sTG~~ 146 (840)
T TIGR01070 77 QG-ESVAICEQIEDPKTAKGPVEREVVQLITPGTVS--DEALL---PERQDNLLAAIAQE----SNGFGLATLDLTTGEF 146 (840)
T ss_pred CC-CEEEEEEecCCchhcCCceeeEEEEEECCCccc--ccccc---cCCCCceEEEEEeC----CCeEEEEEEEccccEE
Confidence 99 9999999998 689999999999984 56666 45689999999632 2369999999999999
Q ss_pred EEEEecCchhHHHHHHHHHccCccEEEecCCCCCChhhHHHHHHhhhcCceeeecccccccchhHHHHHHHhhcCCCCCc
Q 002722 168 GLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVRGSVEPV 247 (888)
Q Consensus 168 ~~~ef~D~~~~~~L~t~L~~~~P~EIli~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~F~~~~~~~~l~~~~~~~~~~~ 247 (888)
++++|.|+ +.|.+.|.+++|+|||++.+... . ... .+ . .|+...+...+...|+ ..+..
T Consensus 147 ~~~~~~d~---~~l~~~l~~~~P~Eil~~~~~~~-~-~~~---~~-------~-----~f~~~~~~~~l~~~f~-~~~l~ 205 (840)
T TIGR01070 147 KVTELADK---ETLYAELQRLNPAEVLLAEDLSE-M-EAI---EL-------R-----EFRKDTAVMSLEAQFG-TEDLG 205 (840)
T ss_pred EEEEecCH---HHHHHHHhccCCeEEEEcCCCCh-H-HHH---Hh-------H-----hcchhHHHHHHHHhcC-ccchh
Confidence 99999874 35889999999999999875211 1 111 11 0 3444444455666664 23344
Q ss_pred ccccCCcccHHHHHHHHHHHHHHHcCcCCCCCceeEEecccccccccHHHHHhhcccccCCCCCCcCcHHHHhhhhcCCc
Q 002722 248 RDLVSGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAG 327 (888)
Q Consensus 248 ~~~~~~~~~a~~AlgaLL~YL~~~~~~~~~~~~~~~~~~~~~~M~LD~~Tl~~LEI~~n~~~~~~~gSLf~lLn~~t~T~ 327 (888)
.++....+.+++|+|++++|++.++.....+...+..+..+++|.||++|++||||++|.+++ ++||||++||+ |+|+
T Consensus 206 ~~~~~~~~~~~~a~g~ll~Yl~~~~~~~~~~~~~~~~~~~~~~m~lD~~t~~~LEl~~~~~~~-~~gSL~~~ld~-t~T~ 283 (840)
T TIGR01070 206 GLGLRNAPLGLTAAGCLLQYAKRTQRTALPHLQPVRLYELQDFMQLDAATRRNLELTENLRGG-KQNTLFSVLDE-TKTA 283 (840)
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHhChhhhhhCCCcEEECCCCEEEeCHHHHHhccCCccCCCC-CCCcHHHHHhh-cCCH
Confidence 455555677999999999999998753322334577888999999999999999999987744 67999999999 9999
Q ss_pred hHHHHHHHHhcCcCCCHHHHHHHHHHHHHHHhChHHHHHHHHHhccCCCHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Q 002722 328 MGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYI 407 (888)
Q Consensus 328 ~GkRlLr~WL~~PL~d~~~I~~R~daVe~l~~~~~l~~~lr~~Lk~i~DleRll~ri~~~~~~~~dl~~l~~~l~~~~~i 407 (888)
||+|+||+||++||+|+++|++|||+|++|.++..++..++..|+++||++|+++|+..++++++||+.+++++..++.+
T Consensus 284 ~G~RlLr~wl~~Pl~d~~~I~~Rld~Ve~l~~~~~l~~~l~~~L~~i~Dlerll~ri~~~~~~~~dl~~l~~~l~~~~~l 363 (840)
T TIGR01070 284 MGSRLLKRWLHRPLRDREVLEARQDTVEVLLRHFFLREGLRPLLKEVGDLERLAARVALGNARPRDLARLRTSLEQLPEL 363 (840)
T ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHhccCcCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcchhhhhhHhhHhhhhhccCCchHHHHHHHHHhhccCccc--cCCcccccCCCCHhHHHHHHHHHHHHHHHH
Q 002722 408 RSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQL--ENGEYMISSSYDTGLSALKNEQESLERQIH 485 (888)
Q Consensus 408 ~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~l~~l~~~i~~~id~~~~--~~~~~~i~~~~d~~Ld~lr~~~~~~~~~l~ 485 (888)
.+.|.... ...+..+...+ +.+.++.+.|+++|+.+.. ..+++.|++|||++||++|+.+++.++++.
T Consensus 364 ~~~l~~~~--------~~~l~~l~~~l--~~~~~l~~~i~~~i~~~~~~~~~~~~~I~~g~~~~Ld~lr~~~~~~~~~l~ 433 (840)
T TIGR01070 364 RALLEELE--------GPTLQALAAQI--DDFSELLELLEAALIENPPLVVRDGGLIREGYDEELDELRAASREGTDYLA 433 (840)
T ss_pred HHHHHhcC--------cHHHHHHHHhc--ccHHHHHHHHHHHHhcCCccccccCCeeCCCCCHHHHHHHHHHHHHHHHHH
Confidence 98887532 11233333334 6788889999999987654 234678999999999999999999999999
Q ss_pred HHHHHHHhhcCCCcccceeeeecceeeEEEEEecCCccccccccCccEEEEEEecceEEEEChhHHHHHHHHHHHHHHHH
Q 002722 486 SLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYK 565 (888)
Q Consensus 486 ~~~~~~~~~~~~~~~~~l~~~~~~~~gy~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~~l~~~~~~~~~~~~ 565 (888)
++.++++++++++ ++++.|++++||+|+|+++....+| .+ |++.+++++..||+||+++++++++.++++++.
T Consensus 434 ~l~~~~~~~~~i~---~lk~~~~~~~gy~iev~~~~~~~vp--~~--~i~~~s~~~~~rf~tpel~~l~~~l~~~~~~~~ 506 (840)
T TIGR01070 434 RLEARERERTGIP---TLKVGYNAVFGYYIEVTRGQLHLVP--AH--YRRRQTLKNAERYITPELKEKEDKVLEAEGKIL 506 (840)
T ss_pred HHHHHHHHHcCCC---ceEEEEecCceEEEEEehhhhhcCC--cc--eEEEEeccCceEEcCHHHHHHHHHHHHHHHHHH
Confidence 9999999999997 8999999999999999987766676 33 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHhcCCCCCCCCccCCCCCccEEEEcCcCceeeeccCcccc
Q 002722 566 NCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFI 645 (888)
Q Consensus 566 ~~~~~i~~~l~~~~~~~~~~l~~~~~~ia~lD~l~s~A~~a~~~~~~~~rP~~~~~~~~~l~i~~~rhp~~~~~~~~~~v 645 (888)
+++.+++.+|.+.+..+.+.|..+++++|+|||++|||.+|.. ++||||+|+++. .+.|++||||+++...+..||
T Consensus 507 ~~e~~i~~~L~~~i~~~~~~l~~~~~~la~lD~l~s~A~~a~~--~~~~~P~~~~~~--~i~i~~~RHP~le~~~~~~~V 582 (840)
T TIGR01070 507 ALEKELFEELRELLKKYLEALQEAARALAELDVLANLAEVAET--LHYTRPRFGDDP--QLRIREGRHPVVEQVLRTPFV 582 (840)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCcCceecCCC--cEEEEeeECHHHHhccCCCeE
Confidence 9999999999999999999999999999999999999999987 789999998753 599999999999865445799
Q ss_pred cCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhcCcccccccccccHHHHHHHhcCCchhhhhccchhHHHHHH
Q 002722 646 PNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLE 725 (888)
Q Consensus 646 ~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~g~~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~ 725 (888)
|||+.++ +..++++||||||||||||||++|++++|||+||||||+.+.++++|+||+|+|+.|++..|.||||+||.+
T Consensus 583 pNdi~l~-~~~~~~iITGPNmgGKSt~lrqvali~imAq~G~~VPA~~a~i~~~D~Iftrig~~d~i~~g~STF~~Em~e 661 (840)
T TIGR01070 583 PNDLEMA-HNRRMLLITGPNMGGKSTYMRQTALIALLAQIGSFVPAESAELPLFDRIFTRIGASDDLASGRSTFMVEMTE 661 (840)
T ss_pred eeeeecC-CCccEEEEECCCCCCchHHHHHHHHHHHHHhcCCCccchheEeccccEEEEecCcccchhcCcchHHHHHHH
Confidence 9999997 456899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhhccccccccccccEeEEEE
Q 002722 726 TASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHV 805 (888)
Q Consensus 726 ~~~il~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~~~~~~~~~~~~~v~~~~~ 805 (888)
++.|++.++++||||+||+|+|||+.||.+|++++++++.+..++.+||+|||++++.++.. .+++.|+||
T Consensus 662 ~a~IL~~at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~eL~~l~~~---------~~~v~n~~~ 732 (840)
T TIGR01070 662 AANILHNATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYFELTALEES---------LPGLKNVHV 732 (840)
T ss_pred HHHHHhhCCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCchHHHHHhhh---------CCCeEEEEE
Confidence 99999999999999999999999999999999999999997569999999999999999887 899999999
Q ss_pred EEEEEcCCCcEEEeEEecCCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccC
Q 002722 806 SAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFT 860 (888)
Q Consensus 806 ~~~~~~~~~~~~~~y~l~~G~~~~s~gi~vA~~aglp~~vi~~A~~~~~~le~~~ 860 (888)
.+.++ +++++|+||+.+|+|++||||+||++||+|++||+||++++++||+..
T Consensus 733 ~~~~~--~~~l~flYkl~~G~~~~Sygi~VA~laGlP~~VI~rA~~il~~le~~~ 785 (840)
T TIGR01070 733 AALEH--NGTIVFLHQVLPGPASKSYGLAVAALAGLPKEVIARARQILTQLEARS 785 (840)
T ss_pred EEEEE--CCcEEEEEEECCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc
Confidence 99876 789999999999999999999999999999999999999999999643
|
|
| >PRK05399 DNA mismatch repair protein MutS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-150 Score=1369.18 Aligned_cols=783 Identities=33% Similarity=0.489 Sum_probs=697.0
Q ss_pred hhhccccHHHHHhcCCCC-CCeEEEEecCceeeehhhhHHHHHHHhhhhhhhhhccCCC-CCCCceeecCHHHHHHHHHH
Q 002722 14 DAKQARGFLSFYKTLPND-TRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLGTG-SDALSSVSVSKNMFETIARD 91 (888)
Q Consensus 14 ~~~~~t~~~~qy~~ik~~-~d~ilffr~GdFYe~f~eDA~~~a~~l~~~~~~l~~~~~~-~~~~p~~gvp~~~~~~yl~~ 91 (888)
+.++.||||+|||+||++ |||||||||||||||||+||.+||++|+++ ++.|+.. .+++||||||+|+++.|+++
T Consensus 4 ~~~~~TP~~~Qy~~iK~~~~D~ilffr~GdFYElf~eDA~~~s~~L~i~---lt~r~~~~~~~~pm~GvP~h~~~~yl~k 80 (854)
T PRK05399 4 DMSKLTPMMQQYLEIKAQYPDALLFFRMGDFYELFFEDAKKASRLLDIT---LTKRGKSAGEPIPMAGVPYHAAEGYLAK 80 (854)
T ss_pred CcCCCCHHHHHHHHHHhhCCCEEEEEEcCCEEEEeHhhHHHHHHHhCeE---EeeccCCCCCCCCEecCcHHHHHHHHHH
Confidence 345589999999999999 999999999999999999999999999999 5556542 35799999999999999999
Q ss_pred HHhhcCCeEEEEEeccC--------CcceeEEecCCCCccccccccccCCCCCCCcEEEEEeeccccCCceEEEEEEecC
Q 002722 92 LLLERTDHTLELYEGSG--------SNWRLVKSGTPGNLGSYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLT 163 (888)
Q Consensus 92 Lv~~~G~ykVai~eQ~e--------~~R~v~rviTPGt~~~~ed~l~~~~~~~~~~yl~aI~~~~~~~~~~iGla~~D~s 163 (888)
|| ++| ||||||||+| ++|+|+||+||||+. |+.++ +..++|||+||... ...+|+||+|+|
T Consensus 81 Lv-~~G-yKVaI~EQ~e~~~~~k~~v~R~v~~i~TpGT~~--~~~~l---~~~~~~yl~ai~~~----~~~~Gia~~D~s 149 (854)
T PRK05399 81 LV-KKG-YKVAICEQVEDPATAKGPVKREVVRIVTPGTVT--DEALL---DEKQNNYLAAIAQD----GGGYGLAYLDLS 149 (854)
T ss_pred HH-HCC-CEEEEEEecCChhhcCCccceEEEEEECCCeee--ccccc---CCCCCcEEEEEEEC----CCeEEEEEEECC
Confidence 99 999 9999999998 689999999999984 66666 34689999999863 357999999999
Q ss_pred CceEEEEEecCchhHHHHHHHHHccCccEEEecCCCCCChhhHHHHHHhhhcCceeeecccccccchhHHHHHHHhhcCC
Q 002722 164 KRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVRGS 243 (888)
Q Consensus 164 tGe~~~~ef~D~~~~~~L~t~L~~~~P~EIli~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~F~~~~~~~~l~~~~~~~ 243 (888)
||+|++++| .+++|++.|.+++|+|||++++... .. +.. ....+..++.+.|+...+.+.+.++|+.
T Consensus 150 tg~~~~~~~----~~~~L~~~l~~~~P~Eil~~~~~~~-~~---~~~----~~~~~~~~~~~~f~~~~~~~~l~~~f~~- 216 (854)
T PRK05399 150 TGEFRVTEL----DEEELLAELARLNPAEILVPEDFSE-DE---LLL----LRRGLRRRPPWEFDLDTAEKRLLEQFGV- 216 (854)
T ss_pred CCeEEEEEE----cHHHHHHHHHhcCCcEEEEcCCcch-hh---Hhh----ccccceeccccccChHHHHHHHHHHhCc-
Confidence 999999999 3678999999999999999876321 11 111 1222344566788877788888888862
Q ss_pred CCCcccccCCcccHHHHHHHHHHHHHHHcCcCCCCCceeEEecccccccccHHHHHhhcccccCCCCCCcCcHHHHhhhh
Q 002722 244 VEPVRDLVSGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRT 323 (888)
Q Consensus 244 ~~~~~~~~~~~~~a~~AlgaLL~YL~~~~~~~~~~~~~~~~~~~~~~M~LD~~Tl~~LEI~~n~~~~~~~gSLf~lLn~~ 323 (888)
.+...++. ..+.+++|+|+|++||+.++.....+...+..+..+++|.||++|++||||++|..+ +++||||++|||
T Consensus 217 ~~~~~~~~-~~~~~~~a~~all~Yl~~~~~~~~~~~~~~~~~~~~~~m~lD~~tl~~Lei~~~~~~-~~~gSL~~~ld~- 293 (854)
T PRK05399 217 ASLDGFGV-DLPLAIRAAGALLQYLKETQKRSLPHLRSPKRYEESDYLILDAATRRNLELTENLRG-GRKNSLLSVLDR- 293 (854)
T ss_pred CCccccCC-CCHHHHHHHHHHHHHHHHhchhhhhccCCCEEECCCCEEEcCHHHHHhccCCccCCC-CCCCcHHHHhcc-
Confidence 23333333 446789999999999998875332334457788899999999999999999998764 457899999999
Q ss_pred cCCchHHHHHHHHhcCcCCCHHHHHHHHHHHHHHHhChHHHHHHHHHhccCCCHHHHHHHHHhccccHHHHHHHHHHHHH
Q 002722 324 CTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIR 403 (888)
Q Consensus 324 t~T~~GkRlLr~WL~~PL~d~~~I~~R~daVe~l~~~~~l~~~lr~~Lk~i~DleRll~ri~~~~~~~~dl~~l~~~l~~ 403 (888)
|+||||+|+||+||++||+|+++|++|||+|++|.++..++..++..|+++||++|+++|+..++++++||..+++++..
T Consensus 294 t~T~~G~RlLr~wl~~Pl~d~~~I~~R~d~Ve~l~~~~~~~~~l~~~L~~i~Dlerll~ri~~~~~~~~dl~~l~~~l~~ 373 (854)
T PRK05399 294 TVTAMGGRLLRRWLHRPLRDREAIEARLDAVEELLEDPLLREDLRELLKGVYDLERLLSRIALGRANPRDLAALRDSLEA 373 (854)
T ss_pred CCCcHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcchhhhhhHhhHhhhhhccCCchHHHHHHHHHhhccCcccc--CCcccccCCCCHhHHHHHHHHHHHH
Q 002722 404 LPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLE--NGEYMISSSYDTGLSALKNEQESLE 481 (888)
Q Consensus 404 ~~~i~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~l~~l~~~i~~~id~~~~~--~~~~~i~~~~d~~Ld~lr~~~~~~~ 481 (888)
++.+.+.|.... ...+..+.+.+ +.+.++.+.|+++||.+... .+++.|++|||++||++|+.++++.
T Consensus 374 ~~~l~~~l~~~~--------~~~l~~l~~~l--~~~~~l~~~i~~~i~~~~~~~~~~~~~i~~g~~~~Ld~lr~~~~~~~ 443 (854)
T PRK05399 374 LPELKELLAELD--------SPLLAELAEQL--DPLEELADLLERAIVEEPPLLIRDGGVIADGYDAELDELRALSDNGK 443 (854)
T ss_pred HHHHHHHHHhcC--------cHHHHHHHhhc--ccHHHHHHHHHHHHccCCchhcccCCEECCCCCHHHHHHHHHHHHHH
Confidence 999998887532 12333343334 67888999999999987542 3468899999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCcccceeeeecceeeEEEEEecCCccccccccCccEEEEEEecceEEEEChhHHHHHHHHHHHH
Q 002722 482 RQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVL 561 (888)
Q Consensus 482 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~gy~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~~l~~~~~~~~ 561 (888)
++++++.++++++++++ ++++.|++++||+|+|+++....+| .+ |+..+++++..||+|++++++++++.+++
T Consensus 444 ~~l~~~~~~~~~~~~~~---~l~~~~~~~~gy~iev~~~~~~~vp--~~--~~~~~s~~~~~rf~t~~l~~l~~~l~~~~ 516 (854)
T PRK05399 444 DWLAELEARERERTGIS---SLKVGYNKVFGYYIEVTKANLDKVP--ED--YIRRQTLKNAERYITPELKELEDKILSAE 516 (854)
T ss_pred HHHHHHHHHHHHHcCCC---ceEEEEcCceeEEEEEEcchhhhCC--hh--hhheeeccCeEEEECHHHHHHHHHHHHHH
Confidence 99999999999999986 8999999999999999988766666 33 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHhcCCCCCCCCccCCCCCccEEEEcCcCceeeec-c
Q 002722 562 EEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQ-D 640 (888)
Q Consensus 562 ~~~~~~~~~i~~~l~~~~~~~~~~l~~~~~~ia~lD~l~s~A~~a~~~~~~~~rP~~~~~~~~~l~i~~~rhp~~~~~-~ 640 (888)
+++.+++.++++++.+.+.++.+.|..+++++|+|||++|||.+|.. ++||||+|.+++ .+.|++||||++|.. .
T Consensus 517 ~~~~~~e~~i~~~l~~~i~~~~~~l~~~~~~la~lD~l~s~A~~a~~--~~~~~P~~~~~~--~l~i~~~rHP~le~~~~ 592 (854)
T PRK05399 517 EKALALEYELFEELREEVAEHIERLQKLAKALAELDVLASLAEVAEE--NNYVRPEFTDDP--GIDIEEGRHPVVEQVLG 592 (854)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCccccEEeCCC--CEEEEeccCcEEecccC
Confidence 99999999999999999999999999999999999999999999986 789999998753 599999999999975 3
Q ss_pred CcccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhcCcccccccccccHHHHHHHhcCCchhhhhccchhH
Q 002722 641 WVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFM 720 (888)
Q Consensus 641 ~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~g~~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~ 720 (888)
+..|||||+.++ +.+++++||||||||||||||++|++++|||+||||||+.+.++++|+||+|+|+.|++..|.||||
T Consensus 593 ~~~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G~~VPa~~a~i~~~d~I~triga~d~i~~g~STF~ 671 (854)
T PRK05399 593 GEPFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQIGSFVPAESARIGIVDRIFTRIGASDDLASGRSTFM 671 (854)
T ss_pred CCceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcCCceeccceEecccCeeeeccCcccccccCcccHH
Confidence 467999999998 6678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhhccccccccccccE
Q 002722 721 QEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGV 800 (888)
Q Consensus 721 ~e~~~~~~il~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~~~~~~~~~~~~~v 800 (888)
+||.+++.|++.++++||||||||||||++.||.++++++++++.+..++++||+||++++.+++++ +++|
T Consensus 672 ~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~~~~~~l~aTH~~el~~l~~~---------~~~v 742 (854)
T PRK05399 672 VEMTETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDKIGAKTLFATHYHELTELEEK---------LPGV 742 (854)
T ss_pred HHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhcCCceEEEEechHHHHHHhhh---------cCCe
Confidence 9999999999999999999999999999999999999999999998446999999999999999988 8999
Q ss_pred eEEEEEEEEEcCCCcEEEeEEecCCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhcc
Q 002722 801 ANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDF 859 (888)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~gi~vA~~aglp~~vi~~A~~~~~~le~~ 859 (888)
.|+||.+... +++++|+|||.+|+|++||||+||++||+|++||+||++++++||+.
T Consensus 743 ~n~~m~~~~~--~~~l~flYkl~~G~~~~SyGi~VA~laGlP~~VI~rA~~i~~~le~~ 799 (854)
T PRK05399 743 KNVHVAVKEH--GGDIVFLHKVVPGAADKSYGIHVAKLAGLPASVIKRAREILAQLESA 799 (854)
T ss_pred EEEEEEEEEe--CCeEEEEEEeCcCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 9999999865 78999999999999999999999999999999999999999999964
|
|
| >KOG0219 consensus Mismatch repair ATPase MSH2 (MutS family) [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-127 Score=1069.69 Aligned_cols=842 Identities=46% Similarity=0.751 Sum_probs=761.1
Q ss_pred CcccchhhhccccHHHHHhcCCCCCCeEEEEecCceeeehhhhHHHHHHHhhhhhhhhhccCCCC-CCCceeecCHHHHH
Q 002722 8 LPELKLDAKQARGFLSFYKTLPNDTRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLGTGS-DALSSVSVSKNMFE 86 (888)
Q Consensus 8 ~~~~~~~~~~~t~~~~qy~~ik~~~d~ilffr~GdFYe~f~eDA~~~a~~l~~~~~~l~~~~~~~-~~~p~~gvp~~~~~ 86 (888)
.+.+..|..++..|.++|..+++..+||.||.+||||..|+|||.++|+..+++..+++..+... ++..+|.++...++
T Consensus 6 ~~~~~~d~~~~~~f~~f~~~l~~p~~tvr~fdrge~ytv~geDa~~va~~v~kt~~~~k~l~~~~~~~~~~v~ls~~~~e 85 (902)
T KOG0219|consen 6 SATLGKDEAADRNFLKFYEGLPKPTTTVRFFDRGEYYTVHGEDAEFVARNVYKTQAVIKTLSPDNAKNTKEVSLSKGNFE 85 (902)
T ss_pred chhhcccchhHHHHHHHHhcCCCCCceEEEecCcceEEEeccchhhhhhhhhhhhhhheecCCcccccceEEEecHHHHH
Confidence 45556788889999999999987679999999999999999999999999999999888766533 67889999999999
Q ss_pred HHHHHHHhhcCCeEEEEEeccCCcceeEEecCCCCccccccccccCCCCCCCcEEEEEeeccccCCceEEEEEEecCCce
Q 002722 87 TIARDLLLERTDHTLELYEGSGSNWRLVKSGTPGNLGSYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKRV 166 (888)
Q Consensus 87 ~yl~~Lv~~~G~ykVai~eQ~e~~R~v~rviTPGt~~~~ed~l~~~~~~~~~~yl~aI~~~~~~~~~~iGla~~D~stGe 166 (888)
.+++.|++..+ |||++|+.-+.+|++++..+||++.+|+|.++++++...++.++.+.....+++..+|+|++|++.-.
T Consensus 86 ~~vr~~l~~~~-~~Ve~y~~~~~~w~l~~~~sPGN~~~fedll~~~~~v~is~~~~~v~~~~~~~~~~vgv~~~d~~~~k 164 (902)
T KOG0219|consen 86 KVVRELLLVLR-YRVEVYSSNQGDWKLTKRGSPGNLVQFEDLLFSNNDVPISIISLIVKHPGVDGQRRVGVAFVDTINVK 164 (902)
T ss_pred HHHHHHHHHhc-cceEEeecCccceeEEecCCCCcHHHHHHHHcccccchhhhhheeEEeeccCCCceeEEEEechhhee
Confidence 99999999999 99999987677899999999999999999988654433333334444333345688999999999999
Q ss_pred EEEEEecCchhHHHHHHHHHccCccEEEecCCCCCChhhHHHHHHhhhcCceeeecccccccchhHHHHHHHhhcCCCCC
Q 002722 167 LGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVRGSVEP 246 (888)
Q Consensus 167 ~~~~ef~D~~~~~~L~t~L~~~~P~EIli~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~F~~~~~~~~l~~~~~~~~~~ 246 (888)
+++.+|.|++.|++++..+.+.+|+|+|++.+ ......+++..++.++++.++.+..++|+.++..+++...+++....
T Consensus 165 ~~~~ef~Dn~~~snle~~l~~lg~kEcll~~~-~~~~~~~kl~~~~~r~g~~~t~~~~~e~~~kdv~~~l~~~l~~~~~~ 243 (902)
T KOG0219|consen 165 IGLSEFVDDDSFSNLEALLIQLGPKECVLPEG-SVAGEMKKLRNIIDRCGVLITLRKKSESSWKDVEQDLNRLLKSQEHA 243 (902)
T ss_pred eehhhhcCcHHHHHHHHHHHhcCCeEEEecCc-ccchHHHHHHHHHhccCeEEEEecccchhHHHHHHHHHhcccchhhh
Confidence 99999999999999999999999999999943 33456788999999999999999999999988888888877633223
Q ss_pred cccccCCcccHHHHHHHHHHHHHHHcCcCCCCCceeEEecccccccccHHHHHhhcccccCCCC-CCcCcHHH-Hhhhhc
Q 002722 247 VRDLVSGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAAMRALNVLESKTDA-NKNFSLFG-LMNRTC 324 (888)
Q Consensus 247 ~~~~~~~~~~a~~AlgaLL~YL~~~~~~~~~~~~~~~~~~~~~~M~LD~~Tl~~LEI~~n~~~~-~~~gSLf~-lLn~~t 324 (888)
..++.....++++++.+++.|+....+..+.+.+.+..++...+|.+|.+|.++|++|+...+. .+..+|.. +||| |
T Consensus 244 ~~~~e~~~q~a~~~~~~~i~yl~~~~e~~~s~~~ei~~~~~~~~m~ld~~av~alnlf~~~~~~~~~s~~L~~~~LN~-c 322 (902)
T KOG0219|consen 244 AYLPELELQLAMSALSALIKYLDLENEYSNSGKYELTNHGLHQFMRLDSAAVRALNLFPLPYNNPEKSNNLALSLLNH-C 322 (902)
T ss_pred ccchHHHhHHHHHHHHHHHHHHhhcccccccceEEEeecchHHHhhHHHHHHHHHhhcCCCCCCccccchhhHHHHhh-c
Confidence 3444445678999999999999776665667788888899999999999999999999865432 34557777 9999 9
Q ss_pred CCchHHHHHHHHhcCcCCCHHHHHHHHHHHHHHHhChHHHHHHHH-HhccCCCHHHHHHHHHhccccHHHHHHHHHHHHH
Q 002722 325 TAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQ-HLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIR 403 (888)
Q Consensus 325 ~T~~GkRlLr~WL~~PL~d~~~I~~R~daVe~l~~~~~l~~~lr~-~Lk~i~DleRll~ri~~~~~~~~dl~~l~~~l~~ 403 (888)
+|++|.|+|++|+.+||+|++.|++|+|.|+.|+++.+.|+.++. .|..+||+.|+..|+. +++++|..++|+....
T Consensus 323 ~t~~G~rll~~w~~qpL~~~~ri~~r~d~v~~l~~~~~~rq~L~~~lL~~~pdi~rl~~~l~--~~~L~d~~r~yq~~~~ 400 (902)
T KOG0219|consen 323 KTLQGERLLRQWLKQPLRDIDRINERHDLVEALVEDAEIRQKLRDDLLRRIPDISRLARRLM--KANLQDVNRIYQAAKL 400 (902)
T ss_pred ccccchhhhhhhhhcchHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHhhcChhHHHhhhhhh--hcchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987 8999999999999999 7899999999999999
Q ss_pred HHHHHHHHhhhhcchhhhhhHhhHhhhhhccCCchHHHHHHHHHhhccCccccCCcccccCCCCHhHHHHHHHHHHHHHH
Q 002722 404 LPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALKNEQESLERQ 483 (888)
Q Consensus 404 ~~~i~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~l~~l~~~i~~~id~~~~~~~~~~i~~~~d~~Ld~lr~~~~~~~~~ 483 (888)
+|++...|..+..+...++.+ ++.+.. ..+.++..++++++|+++.+++.+.|+++||++|.++|+.+++++..
T Consensus 401 l~~~~~~l~~~~~~~~~ll~~----~l~~~~--~~~~kf~~~ve~t~D~da~ee~ey~VR~eFdeeL~eLrq~LdeL~~~ 474 (902)
T KOG0219|consen 401 LPTVVQVLISLSESHNRLLKS----PLTEHL--KKLEKFQEMVETTVDLDAEEENEYRVRVDFDEELQELREKLDELERK 474 (902)
T ss_pred hHHHHHHHHhhhhhhhhhhhh----hhhhhh--hhHHHHHHHHHHHhhHhHHhcCcEEEecccCHHHHHHHHHHHHHHHH
Confidence 999999998866555555443 555555 78889999999999999998889999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCcccceeeeecceeeEEEEEecCCccccccccCccEEEEEEecceEEEEChhHHHHHHHHHHHHHH
Q 002722 484 IHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEE 563 (888)
Q Consensus 484 l~~~~~~~~~~~~~~~~~~l~~~~~~~~gy~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~~l~~~~~~~~~~ 563 (888)
+.++.+++..+++.+.+|+|+++.+..||||+++++++.+.++..++ |..+++.|++++|+|.+|..||+++.+.+.+
T Consensus 475 m~~~hkrv~~dl~~D~~kklkLe~~~~~G~~~RlTr~e~~~LR~~k~--y~eLstqK~GV~FTtk~L~slN~e~~~~qk~ 552 (902)
T KOG0219|consen 475 MEKLHKKVSADLGLDPKKQLKLENSAQFGWYFRVTRKEEKVLRKKKN--YTELSTQKGGVKFTTKKLSSLNDEFMSLQKE 552 (902)
T ss_pred HHHHHHHHHhhcCCCcccceeeeccchhheeeeeeehhhhHhhccCC--ceEEEEeeCcEEEEhhhHhhhHHHHHHHHHH
Confidence 99999999999999989999999999999999999999999985555 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHhcCCCCCCCCccCCCCCccEEEEcCcCceeeeccCcc
Q 002722 564 YKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVN 643 (888)
Q Consensus 564 ~~~~~~~i~~~l~~~~~~~~~~l~~~~~~ia~lD~l~s~A~~a~~~~~~~~rP~~~~~~~~~l~i~~~rhp~~~~~~~~~ 643 (888)
|...|..+.+++......|.|.|..+++.+|.|||+.|||++|..++.+|+||.+.+.+...+.++++|||++|.+....
T Consensus 553 Y~~~Q~~ivrevikia~tY~Ppleal~~vlAhLDv~~SFa~~st~a~~pYvRP~~l~~gs~rl~l~~~rHp~lE~Qd~~~ 632 (902)
T KOG0219|consen 553 YDEAQNEIVREIIKIAATYTPPLEALNQVLAHLDVFVSFAHAATVAPIPYVRPKLLPLGSKRLELKQSRHPVLEGQDEIP 632 (902)
T ss_pred HHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhheeehhhcccCCCCccCccccccchhHHHHHhcccchhhccccCC
Confidence 99999999999999999999999999999999999999999999888999999999987767999999999999988788
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhcCcccccccccccHHHHHHHhcCCchhhhhccchhHHHH
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEM 723 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~g~~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~ 723 (888)
||||++.|..+++++.+||||||+|||||+|++|.+++|||+|||||++.+.++++|.|++|+|+.|+..+|.||||.||
T Consensus 633 fIpNdv~le~~~~~~~IiTGpNMGGKSTyir~~Gvi~lmAQIGcfVPce~A~i~IvD~Il~RVGA~D~q~kG~STFM~Em 712 (902)
T KOG0219|consen 633 FIPNDVVLEKGKCRMLIITGPNMGGKSTYIRQVGVIVLMAQIGCFVPCESATISIVDGILTRVGAGDSQLKGISTFMAEM 712 (902)
T ss_pred CCCCccccccCCceEEEEeCCCcCccchhhhhhhHHHHHHHhCCceehhhcCCchhhHHHhhhccchhhhcchHHHHHHH
Confidence 99999999988999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhhccccccccccccEeEE
Q 002722 724 LETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANY 803 (888)
Q Consensus 724 ~~~~~il~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~~~~~~~~~~~~~v~~~ 803 (888)
.+.+.|++.+++.|||++|||||||+++||..+||++-+++..+.||.+||+||+|+++.++.. .+.++|.
T Consensus 713 leta~Ilr~at~~SliiiDELGRGTSt~DGfgiAwai~ehi~~ki~cf~lfATHfhElt~lae~---------~~~vKn~ 783 (902)
T KOG0219|consen 713 LETASILRRATKNSLIIIDELGRGTSTYDGFGIAWAIAEHIATKIGCFCLFATHFHELTKLAEQ---------LPTVKNL 783 (902)
T ss_pred HHHHHHHHhcCCCcEEEEeccCCCceeccCccHHHHHHHHHHHHHhHhHHHHhHHHHHHhhhhh---------hhhhhhh
Confidence 9999999999999999999999999999999999999999998789999999999999999988 8999999
Q ss_pred EEEEEEEcCCCcEEEeEEecCCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCCCCCChhHHHHHHH
Q 002722 804 HVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFTPSAVISDDAKIEVCA 875 (888)
Q Consensus 804 ~~~~~~~~~~~~~~~~y~l~~G~~~~s~gi~vA~~aglp~~vi~~A~~~~~~le~~~~~~~~~~~~~~~~~~ 875 (888)
||.+.++ ++.++.+|++.+|+|++||||+||++||+|+.||+.|++++++||+..-. .+..+|+++-+
T Consensus 784 h~~a~i~--~~~~~llY~V~~Gv~d~SFGi~VA~~a~fp~~vie~A~~~~~ele~~~~~--~e~k~kKe~l~ 851 (902)
T KOG0219|consen 784 HVTAQIE--NDDITLLYKVFEGVCDQSFGIHVAELVGFPEHVIEMAKQKAEELEDELVI--KESKEKKELLE 851 (902)
T ss_pred eeeeEec--CcchhhHHHHhcccccCcchhhHHHHcCCChHHHHHHHHHHHHHHHHHhh--hhhhhHHHHHH
Confidence 9999998 78999999999999999999999999999999999999999999987654 33445554443
|
|
| >KOG0217 consensus Mismatch repair ATPase MSH6 (MutS family) [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-124 Score=1065.14 Aligned_cols=811 Identities=25% Similarity=0.355 Sum_probs=657.6
Q ss_pred hhhccccHHHHHhcCCCC-CCeEEEEecCceeeehhhhHHHHHHHhhhhhhhhhccCCCCCCCceeecCHHHHHHHHHHH
Q 002722 14 DAKQARGFLSFYKTLPND-TRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLGTGSDALSSVSVSKNMFETIARDL 92 (888)
Q Consensus 14 ~~~~~t~~~~qy~~ik~~-~d~ilffr~GdFYe~f~eDA~~~a~~l~~~~~~l~~~~~~~~~~p~~gvp~~~~~~yl~~L 92 (888)
.-++.||+++|||+||++ +|||+||++|+|||+|..||.++++++++. .++ .++||||+|.++|+.|+.++
T Consensus 244 ~~~kftpg~kqwWeiKs~~fD~ivfFk~GKFyELye~DA~vg~~~~dl~-----f~~---vN~~~~GfPE~sf~~~a~q~ 315 (1125)
T KOG0217|consen 244 FWKKFTPGEKQWWEIKSDNFDTIVFFKKGKFYELYEMDALVGARLFDLK-----FMD---VNMPHSGFPEGSFDYWADQF 315 (1125)
T ss_pred HHhcCCchhhhhhhhhhhcccEEEEEecchHHHHHhhhhhhhhhhccee-----ecc---cccccCCCCccchhhHHHHH
Confidence 346789999999999999 999999999999999999999999999976 332 46999999999999999999
Q ss_pred HhhcCCeEEEEEeccC------------------CcceeEEecCCCCccccccccccCCCCCCCcEEEEEeecccc---C
Q 002722 93 LLERTDHTLELYEGSG------------------SNWRLVKSGTPGNLGSYEDVLFANNEMQDTPVIVALFPNFRE---N 151 (888)
Q Consensus 93 v~~~G~ykVai~eQ~e------------------~~R~v~rviTPGt~~~~ed~l~~~~~~~~~~yl~aI~~~~~~---~ 151 (888)
+ ++| ||||.+||+| ++|+|.+|+|.||+++ +.++.+ ..+.|+|||.+.... +
T Consensus 316 i-q~G-YkvarVEQtEt~l~~e~r~~~~~~kdkvvrRev~~ilt~GT~td--~~l~~~---~~akylmai~e~~~~~~~~ 388 (1125)
T KOG0217|consen 316 I-QKG-YKVARVEQTETPLGKEIRERKTGKKDKVVRREVCRILTNGTLTD--IALLTS---DLAKYLMAIKESEESYSTG 388 (1125)
T ss_pred H-hcc-ceeeeeccccChHHhhhhhcccccchhhHHHHHHHHhcCCcchh--HHHhcc---HHHHHHHHHhhcCCCCCcC
Confidence 9 999 9999999998 4899999999999975 344422 246799999876442 3
Q ss_pred CceEEEEEEecCCceEEEEEecCchhHHHHHHHHHccCccEEEecCCCCCChhhHHHHHHhhhcCceeeecccccccchh
Q 002722 152 GCTIGLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRD 231 (888)
Q Consensus 152 ~~~iGla~~D~stGe~~~~ef~D~~~~~~L~t~L~~~~P~EIli~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~F~~~~ 231 (888)
...+|+|++|++||+++++||+||...+.|.|+|+++.|+|+|.+.+....+....+. ..-.++......|.++||..+
T Consensus 389 ~~s~gvc~iDtstge~~~~eF~DDr~~s~L~tlLs~~rp~E~I~e~~~ls~~t~~~ik-~~~~~~~~~n~~~~~eFwdse 467 (1125)
T KOG0217|consen 389 EVSFGVCFIDTSTGEINIGEFCDDRHCSKLDTLLSQVRPVELIEERKNLSDPTKVIIK-LKLSSNLVENLVPKSEFWDSE 467 (1125)
T ss_pred ceeeeEEEEEcccceEEEEEeecchhhhHHHHHHHcccHHHHHHHhhccCCceeeeee-eeecchhhhcccChhhhcchh
Confidence 5679999999999999999999999999999999999999999876643222211111 101122233456777888732
Q ss_pred -HHH-HHH-Hhhc--C-CCCCcc--cccCCcccHHHHHHHHHHHHHHHcC-cC--CCCCceeEEecccccccccHHHHHh
Q 002722 232 -LVQ-DLD-RLVR--G-SVEPVR--DLVSGFEIAPGALGALLSYAELLSD-ES--NYGNYYIRKYSLDSYMRLDSAAMRA 300 (888)
Q Consensus 232 -~~~-~l~-~~~~--~-~~~~~~--~~~~~~~~a~~AlgaLL~YL~~~~~-~~--~~~~~~~~~~~~~~~M~LD~~Tl~~ 300 (888)
... .+. +++. + +.+++. -+....+++++|+|+++.||+.... .. ...++..........|+||++||+|
T Consensus 468 k~~~eii~~dy~~~~g~e~~~sil~~p~~~~~la~safg~~~~Ylk~~~id~~llsm~n~~ey~~~~~s~mvlD~~tL~N 547 (1125)
T KOG0217|consen 468 KTGREIISEDYFESLGLEDSPSILKSPNTDKELALSAFGGLFYYLKKLLIDEELLSMKNFEEYDSLDQSEMVLDGATLEN 547 (1125)
T ss_pred hHHHHHhhhhhhhcccccCchhhccCCCccchhhHHHHHHHHHHHHHHhhHHHHhhhhhhhhcchhcccceeecchhhhh
Confidence 111 111 1221 1 111111 1234468999999999999997642 11 2233333222224459999999999
Q ss_pred hcccccCCCCCCcCcHHHHhhhhcCCchHHHHHHHHhcCcCCCHHHHHHHHHHHHHHHhChHHHHHHHHHhccCCCHHHH
Q 002722 301 LNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERL 380 (888)
Q Consensus 301 LEI~~n~~~~~~~gSLf~lLn~~t~T~~GkRlLr~WL~~PL~d~~~I~~R~daVe~l~~~~~l~~~lr~~Lk~i~DleRl 380 (888)
||||.|.++|+.+||||..+|+ |.||||||||+.||++||+|.+.|++|||+|+.|..++..+..+.+.|+++||+||+
T Consensus 548 leIf~Ns~~G~~~gtL~~~~~~-csTpfGKRllk~Wl~~Pl~~~~~I~~R~dav~~l~~~~~~~~~~~e~l~klPDlERl 626 (1125)
T KOG0217|consen 548 LEIFSNSRNGGDEGTLFYAVNR-CSTPFGKRLLKTWLMAPLCDKEDIKQRQDAVDSLGKAPMDRTKVGETLKKLPDLERL 626 (1125)
T ss_pred hhhhccCCCCCCchhHHHHHhh-ccChHHHHHHHHHhhCcCCCHHHHHHHHHHHHHHhcCchhHHHHHHHHhhCCcHHHH
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccc-HHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhhHhhHhhhhhccCCchHHHHHHHHHhhccCcccc-CC
Q 002722 381 MHNLEKRRAG-LQQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLE-NG 458 (888)
Q Consensus 381 l~ri~~~~~~-~~dl~~l~~~l~~~~~i~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~l~~l~~~i~~~id~~~~~-~~ 458 (888)
|.|++.+..+ .+++..+..+|..+..+.+.+....+.........++..+...+ +++..=+..+..++|..... .+
T Consensus 627 L~Rih~~~~~~~k~i~~f~rvLegfk~~~~~~~~~~~v~~~~~~~~~is~~~~~~--p~~~~~i~~~~~af~r~~a~~eg 704 (1125)
T KOG0217|consen 627 LVRIHNGGEKNKKKIADFIRVLEGFKEINKLLGSLINVLKEGEGLRLISELLESM--PNLSEEIENWTEAFDRVKAVKEG 704 (1125)
T ss_pred HHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCc--chhhHHHHHHHHHHHHHHHhhcC
Confidence 9999998665 54555555555555554444443221111100111122111111 22322223334455554332 23
Q ss_pred cccccCCCCHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccceeeeecceeeEEEEEecCCccccccccCccEEEEEE
Q 002722 459 EYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLET 538 (888)
Q Consensus 459 ~~~i~~~~d~~Ld~lr~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~gy~i~v~~~~~~~~~~~~~~~~~~~~~ 538 (888)
.+....|||+++|+.-+.++++++.+.++++++++++++. ++......+--|++++|.+-....+ .+ |...++
T Consensus 705 ~i~P~~Gfd~eyD~a~k~~~e~e~~L~~~L~~~rk~l~c~---si~~~~vGk~~y~lEvP~n~~~~s~--~~--~~~~S~ 777 (1125)
T KOG0217|consen 705 VIVPLEGFDEEYDEAMKRVDEAENELLAYLEEYRKRLGCS---SIVFVDVGKDVYQLEVPENGGVPSS--LR--YELMSA 777 (1125)
T ss_pred ccCCCccccHHHHHHhhHHHHHHHHHHHHHHHHHHhcCCC---ceeEeecCceEEEEecCcccCCCCc--hH--HHHHHh
Confidence 4555789999999999999999999999999999999986 6666555555699999876432222 33 999999
Q ss_pred ecceEEEEChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHhcCCCCCCCCcc
Q 002722 539 RKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDI 618 (888)
Q Consensus 539 ~~~~~~~~t~~l~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~l~~~~~~ia~lD~l~s~A~~a~~~~~~~~rP~~ 618 (888)
+|+..||.|+++..+-..+.+++++.......+.+++...+.++...|+.++.++|.||||+|+|.+|...+.++|||+|
T Consensus 778 ~Kg~~RY~tp~~~kli~~l~~aee~~~~~~~d~~~r~~~~f~~~~~~w~~tv~~~a~iD~l~sla~~s~~~~~~~Crp~i 857 (1125)
T KOG0217|consen 778 KKGVSRYYTPDLRKLIAHLDEAEERKKSSLSDLKRRLIVRFDEHYIIWQATVKALASIDCLLSLAETSKGLGGPMCRPEI 857 (1125)
T ss_pred hcCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999877889999999
Q ss_pred CCCCCc--cEEEEcCcCceeeecc-CcccccCCcccc-CCCCeEEEEEecCCCChhHHHhhhhHHHhhhhcCcccccccc
Q 002722 619 NPPDVG--DIILEGSRHPCVEAQD-WVNFIPNDCKLI-RGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRA 694 (888)
Q Consensus 619 ~~~~~~--~l~i~~~rhp~~~~~~-~~~~v~n~~~l~-~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~g~~vp~~~~ 694 (888)
.+..+. -+.++++|||++.... +..||||++.+. .....+.++|||||+|||||||+++.+++|||+||+|||+.+
T Consensus 858 ~~~~dt~~~l~~~~~~Hpcfsl~s~~~~fipN~v~~g~~~e~~~~llTGpNmgGKSTllRq~c~~vilaq~G~~VPa~~~ 937 (1125)
T KOG0217|consen 858 VESTDTPGFLIVKGLRHPCFSLPSTGTSFIPNDVELGGAEENREGLLTGPNMGGKSTLLRQACIAVILAQIGCDVPAEVM 937 (1125)
T ss_pred ecccCCCceeEEecccCceeecCcCCCccccchhhccccccceeeeeccCCcCCchHHHHHHHHHHHHHHhCCCccHHHh
Confidence 765433 4899999999998643 357999999997 444556669999999999999999999999999999999999
Q ss_pred cccHHHHHHHhcCCchhhhhccchhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEE
Q 002722 695 SISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLF 774 (888)
Q Consensus 695 ~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~ 774 (888)
.++++|+||+|+|+.|++..|.|||+.|+.+++.|+..+++.|||++||.||||++.||.+||.+++++|.+..+|..+|
T Consensus 938 ~~tpidrI~tRlGA~D~im~g~STF~vELsET~~IL~~aT~~SLvi~DELGRGtst~DG~aIA~aVLe~l~~~i~c~~fF 1017 (1125)
T KOG0217|consen 938 ELTPIDRIFTRLGANDDIMSGESTFFVELSETKKILKHATRHSLVIVDELGRGTSTFDGTAIAEAVLEHLSEGIQCLGFF 1017 (1125)
T ss_pred cccchHHHhhhcccccchhcCCceEEEeccchHHHHhhcCccceeeehhhcCcccccCCcchHHHHHHHHHhcccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999878999999
Q ss_pred EecChhHHHHhhhccccccccccccEeEEEEEEEEEcCCCcEEEeEEecCCCCCCcHHHHHHHHCCCCHHHHHHHHHHHH
Q 002722 775 ATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAA 854 (888)
Q Consensus 775 ~TH~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~gi~vA~~aglp~~vi~~A~~~~~ 854 (888)
+||||.++....+ .|+|+.+||.+.++. ...++|+||+.+|+|++|||++||++||+|..||++|..++.
T Consensus 1018 STHYhsl~~~~~~---------~p~Vrl~~Ma~~vd~-e~~vtFLYkl~~G~cpkSyG~~vArmaglp~~vi~~a~~~a~ 1087 (1125)
T KOG0217|consen 1018 STHYHSLCVDFMH---------HPQVRLLHMACVVDE-EIDVTFLYKLEEGICPKSYGFNVARMAGLPDQVIDRAEIKAH 1087 (1125)
T ss_pred cccccchhHhhhc---------CccccchhheeeecC-CccEEEeehhccCCCCcchhHHHHHhcCCcHHHHHHHHHHHH
Confidence 9999999876655 799999999999884 225999999999999999999999999999999999999999
Q ss_pred HHhccC
Q 002722 855 ELEDFT 860 (888)
Q Consensus 855 ~le~~~ 860 (888)
+|+...
T Consensus 1088 E~e~~~ 1093 (1125)
T KOG0217|consen 1088 ELEKSS 1093 (1125)
T ss_pred HHHHHH
Confidence 999765
|
|
| >KOG0218 consensus Mismatch repair MSH3 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-121 Score=1006.34 Aligned_cols=810 Identities=24% Similarity=0.345 Sum_probs=631.8
Q ss_pred hhhhccccHHHHHhcCCCC-CCeEEEEecCceeeehhhhHHHHHHHhhhhhhhhhccCCCCCCCceeecCHHHHHHHHHH
Q 002722 13 LDAKQARGFLSFYKTLPND-TRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLGTGSDALSSVSVSKNMFETIARD 91 (888)
Q Consensus 13 ~~~~~~t~~~~qy~~ik~~-~d~ilffr~GdFYe~f~eDA~~~a~~l~~~~~~l~~~~~~~~~~p~~gvp~~~~~~yl~~ 91 (888)
.+++..||.-+||.++|.+ +|+||..++|+.|.+|+|||++||++|+|.. . ...++-.|+||.|.++.+++|
T Consensus 157 ~~ks~yTPLeqQ~~elK~~h~d~VL~ievGYkyRfFgeDAeiasrvLgIyc----h---~dhnFmtaS~P~~Rl~vHleR 229 (1070)
T KOG0218|consen 157 SPKSKYTPLEQQVKELKMHHRDKVLVIEVGYKYRFFGEDAEIASRVLGIYC----H---NDHNFMTASFPDVRLNVHLER 229 (1070)
T ss_pred CcccccCcHHHHHHHHHhhCCceEEEEEecceEEeecccHHHHHHhhceEE----E---eccceeeccCCcchhhHHHHH
Confidence 4566699999999999999 9999999999999999999999999999962 1 235799999999999999999
Q ss_pred HHhhcCCeEEEEEeccC--------------CcceeEEecCCCCccccccc--cccCC--CCCCCcEEEEEeeccc----
Q 002722 92 LLLERTDHTLELYEGSG--------------SNWRLVKSGTPGNLGSYEDV--LFANN--EMQDTPVIVALFPNFR---- 149 (888)
Q Consensus 92 Lv~~~G~ykVai~eQ~e--------------~~R~v~rviTPGt~~~~ed~--l~~~~--~~~~~~yl~aI~~~~~---- 149 (888)
|| .+| |||||++|+| ..|++.++.|.||+. ||. ++... -...++|++|+.....
T Consensus 230 Lv-~~g-~KVaVVkQtETAAiKs~gasRsslF~RklsavyTKaTl~--eds~~~~r~e~~~~~~ssfllcv~dn~~ksk~ 305 (1070)
T KOG0218|consen 230 LV-HHG-LKVAVVKQTETAAIKSHGASRSSLFERKLSAVYTKATLG--EDSTFVLRGERILGDTSSFLLCVRDNVHKSKE 305 (1070)
T ss_pred HH-hcC-ceEEEEeehhhHHHHhcCCcccchHHHHHHHHhhhhhhc--cccccccchhhhcCCcceEEEEEehhhhhhhh
Confidence 99 999 9999999999 289999999999984 554 22110 1247899999975321
Q ss_pred -cCCceEEEEEEecCCceEEEEEecCchhHHHHHHHHHccCccEEEecCCCCCChhhHHHHHHhhhcCceeeeccccccc
Q 002722 150 -ENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFK 228 (888)
Q Consensus 150 -~~~~~iGla~~D~stGe~~~~ef~D~~~~~~L~t~L~~~~P~EIli~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~F~ 228 (888)
.+...+|+..+.++||++.+.+|.|+..++.|++.+..++|.|+|++... ++....+ +.+.++.+.......|.
T Consensus 306 ksg~v~vgligVqlstGevVydeFqdnf~rseLqtrisslqP~ElLl~~~l--s~qt~al---l~~~~Vsve~~~~rv~r 380 (1070)
T KOG0218|consen 306 KSGVVKVGLIGVQLSTGEVVYDEFQDNFARSELQTRISSLQPIELLLNTDL--SPQTVAL---LFKDNVSVELIHKRVYR 380 (1070)
T ss_pred hcCceEEEEEEEecCCCcEehHhhhhhHHHHHHHHHHhccCcceeecCCCC--cHHHHHH---HHhcccchhhhhhhhhh
Confidence 12457999999999999999999999999999999999999999998652 1222222 11122211111111222
Q ss_pred ch--------hHHHHHHHhhcCCCCCc------ccccCCcccHHHHHHHHHHHHHHHcCcCCCCCcee-EEecccccccc
Q 002722 229 TR--------DLVQDLDRLVRGSVEPV------RDLVSGFEIAPGALGALLSYAELLSDESNYGNYYI-RKYSLDSYMRL 293 (888)
Q Consensus 229 ~~--------~~~~~l~~~~~~~~~~~------~~~~~~~~~a~~AlgaLL~YL~~~~~~~~~~~~~~-~~~~~~~~M~L 293 (888)
.. -+.+.+.+++....-.. .......+-.++.+++++.||.+......+-.-.+ ...+...+|.|
T Consensus 381 ~~naV~q~ikla~e~~q~f~~~k~~l~gs~ii~li~nl~~psvic~la~~is~lkefnlE~~l~~psf~s~~ss~e~Mtl 460 (1070)
T KOG0218|consen 381 LENAVVQAIKLANEKIQNFEDDKEMLEGSEIICLIMNLSHPSVICLLAKLISHLKEFNLEQVLLIPSFYSPFSSKEHMTL 460 (1070)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhcCCCchHHHHHHHHHHHHHHhchHHheecccccCcccccceeee
Confidence 11 12222222221100000 00011223356669999999998643221110011 12345568999
Q ss_pred cHHHHHhhcccccCCCCCCcCcHHHHhhhhcCCchHHHHHHHHhcCcCCCHHHHHHHHHHHHHHH---hChHHHHHHHHH
Q 002722 294 DSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFV---DDTALRQDLRQH 370 (888)
Q Consensus 294 D~~Tl~~LEI~~n~~~~~~~gSLf~lLn~~t~T~~GkRlLr~WL~~PL~d~~~I~~R~daVe~l~---~~~~l~~~lr~~ 370 (888)
+++|+++||||.|++|++.+|||||+||| |.|.+|.|+||+|+.+||.|...|++|+|||+++. +|....+.++..
T Consensus 461 s~ntLq~Leif~nqtd~~~kGSLfwvldh-T~TsfG~RmLr~WvtkPLvd~~~I~eRLDAVeeitshssnS~vf~si~~~ 539 (1070)
T KOG0218|consen 461 SPNTLQSLEIFTNQTDGSEKGSLFWVLDH-TRTSFGLRMLREWVTKPLVDVHQIEERLDAVEEITSHSSNSIVFESINQM 539 (1070)
T ss_pred chhhhhceeeeeecCCCCcccceEEEecc-chhHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 99999999999999999999999999999 99999999999999999999999999999999993 355688999999
Q ss_pred hccCCCHHHHHHHHHhccccH-HHHHHHHHH----HHHHHHHHHHHhhhh-----cchhhhhhHhhHhhhhhccCCchHH
Q 002722 371 LKRISDIERLMHNLEKRRAGL-QQIVKLYQS----SIRLPYIRSALQQYE-----GQFSSLIKERYLDPLESLTDDDHLN 440 (888)
Q Consensus 371 Lk~i~DleRll~ri~~~~~~~-~dl~~l~~~----l~~~~~i~~~l~~~~-----~~~~~~l~~~~~~~l~~~~~~~~l~ 440 (888)
|.+.|||.|-+.||..++|+| +++..+... ...+..+...+.... ...++.+...++..+.+-.....++
T Consensus 540 l~rlpDl~rgL~rIy~~tCtp~~eff~vlk~iy~a~s~fq~~~~~~~~~~~s~~~s~~qS~LLrrlisel~~p~~~s~~~ 619 (1070)
T KOG0218|consen 540 LNRLPDLLRGLNRIYYGTCTPRKEFFFVLKQIYSAVSHFQMHQSYLEHFKSSDGRSGKQSPLLRRLISELNEPLSTSQLP 619 (1070)
T ss_pred HHhCcHhHhhHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchhccHHHHHHHHHhcCccccccHH
Confidence 999999999999999999999 666544333 333333322232211 0112222233334442221125667
Q ss_pred HHHHHHHhhccCccccCCcccc-----cCCCC--HhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccceeeeecceeeE
Q 002722 441 KFIALVETSVDLDQLENGEYMI-----SSSYD--TGLSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGH 513 (888)
Q Consensus 441 ~l~~~i~~~id~~~~~~~~~~i-----~~~~d--~~Ld~lr~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~gy 513 (888)
.+..+++..--... +..-.+ -|.++ +.+....++......++.+.++++|+.+..| .+.+.-.....|
T Consensus 620 hfL~mln~~aa~~g--nk~d~fkd~snfpl~~e~~di~~virE~~ms~~~~~~hLaeiRk~Lk~p---nlef~~vsgv~f 694 (1070)
T KOG0218|consen 620 HFLTMLNVSAAMEG--NKDDQFKDFSNFPLYDESEDIIKVIRESEMSRSQLKEHLAEIRKYLKRP---NLEFRQVSGVDF 694 (1070)
T ss_pred HHHHHhhHHHHhhC--ChHHhhhhhccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CceeEEecCeeE
Confidence 77766533111100 000001 11111 1122222223333445777888889988877 443332233349
Q ss_pred EEEEecCCccccccccCccEEEEEEecceEEEEChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 002722 514 VFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATML 593 (888)
Q Consensus 514 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~l~~~~~~i 593 (888)
+|||+.+..+++| .+ |+.++++|...||+||+++++-.++...++.........++...+.+.+|+..|+++...+
T Consensus 695 lIEvkns~~kkiP--~d--WiKvnsTk~vsRfhtP~iq~~l~eL~~~~e~L~i~sea~~~sFL~kiSehYtelrkat~~L 770 (1070)
T KOG0218|consen 695 LIEVKNSQIKKIP--DD--WIKVNSTKMVSRFHTPRIQKLLQELEYYKELLIIESEAQYKSFLNKISEHYTELRKATLNL 770 (1070)
T ss_pred EEEecccccccCC--cc--ceeeccceeeeecCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999877777777 44 9999999999999999999999999999998888888889999999999999999999999
Q ss_pred HHHHHHHHhhHHHhcCCCCCCCCccCCCCCccEEEEcCcCceeeeccCcccccCCccccCCCCeEEEEEecCCCChhHHH
Q 002722 594 SELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFI 673 (888)
Q Consensus 594 a~lD~l~s~A~~a~~~~~~~~rP~~~~~~~~~l~i~~~rhp~~~~~~~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTll 673 (888)
|.+||+.|||.+|++ .+||||+|+++. ..|.|++||||++|...+..|||||+.++.+.+++.+||||||+|||.|+
T Consensus 771 atlDCi~SlA~~s~n--~nYvRPtfvd~~-~eI~ikngRhPvIe~Ll~d~fVPNdi~ls~egerc~IITGPNMGGKSsyI 847 (1070)
T KOG0218|consen 771 ATLDCILSLAATSCN--VNYVRPTFVDGQ-QEIIIKNGRHPVIESLLVDYFVPNDIMLSPEGERCNIITGPNMGGKSSYI 847 (1070)
T ss_pred HHHHHHHHHHHHhcc--CCccCcccccch-hhhhhhcCCCchHHHHhhhccCCCcceecCCCceEEEEeCCCCCCchHHH
Confidence 999999999999987 799999999853 46999999999999776667999999999999999999999999999999
Q ss_pred hhhhHHHhhhhcCcccccccccccHHHHHHHhcCCchhhhhccchhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhH
Q 002722 674 RQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDG 753 (888)
Q Consensus 674 r~i~~~~~~a~~g~~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~~~~slvllDEp~~gtd~~~~ 753 (888)
||+|++.+|||+|+||||+.+.++++|.+|+|||+.|++..|.||||.||..++.|++.++.+|||||||.||||++.||
T Consensus 848 rQvALitIMAQiGsfVPAeea~l~IfdgvltRmGAsDnI~~grSTFm~Emldt~eil~kat~~SlvilDElGRGTsThDG 927 (1070)
T KOG0218|consen 848 RQVALITIMAQIGSFVPAEEARLSIFDGVLTRMGASDNIINGRSTFMVEMLDTLEILKKATKRSLVILDELGRGTSTHDG 927 (1070)
T ss_pred HHHHHHHHHHHhcCccchHHhhhhHHhhHHHhhccccccccchhHHHHHHHHHHHHHHhcccchhhhhHhhcCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhhcccccccccccc-EeEEEEEEEEEcC-----CCcEEEeEEecCCCC
Q 002722 754 FGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVG-VANYHVSAHIDST-----SRKLTMLYKVEPGAC 827 (888)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~-----~~~~~~~y~l~~G~~ 827 (888)
.+|++|.++|+.+..+|.++|+|||+.+.++... +|+ +.||||.+.+.++ .+.++|+|||++|.|
T Consensus 928 iAIsYAtL~yf~~~~k~l~LFvTHfP~l~eie~~---------f~gqv~nyHmgyl~sedk~~~d~dsVtfLYklvrGla 998 (1070)
T KOG0218|consen 928 IAISYATLKYFSELSKCLILFVTHFPMLGEIESG---------FPGQVRNYHMGYLESEDKTGEDWDSVTFLYKLVRGLA 998 (1070)
T ss_pred hhHHHHHHHHHHHhhceeEEeeecCcchhhhhcC---------CCccccceeeeeeeeccccCCCchhhhhHHHHhhhhh
Confidence 9999999999998789999999999999998877 665 9999999977322 367999999999999
Q ss_pred CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccC
Q 002722 828 DQSFGIHVAEFANFPESVVTLAREKAAELEDFT 860 (888)
Q Consensus 828 ~~s~gi~vA~~aglp~~vi~~A~~~~~~le~~~ 860 (888)
.+|||++||++|++|.+||+||-.++++||+..
T Consensus 999 srSyGlnVAklA~ip~sii~rA~siSeeleke~ 1031 (1070)
T KOG0218|consen 999 SRSYGLNVAKLARIPKSIINRAFSISEELEKES 1031 (1070)
T ss_pred hccccccHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999865
|
|
| >KOG0220 consensus Mismatch repair ATPase MSH4 (MutS family) [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-82 Score=700.44 Aligned_cols=689 Identities=28% Similarity=0.411 Sum_probs=577.3
Q ss_pred CCCcEEEEEeeccccCCceEEEEEEecCCceEEEEEecCchhHHHHHHHHHccCccEEEecCCCCCChhhHHHHHHh-h-
Q 002722 136 QDTPVIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDAL-T- 213 (888)
Q Consensus 136 ~~~~yl~aI~~~~~~~~~~iGla~~D~stGe~~~~ef~D~~~~~~L~t~L~~~~P~EIli~~~~~~~~~~~~l~~~l-~- 213 (888)
.....++++.+.++...++||+|.+|..+|++++++|.|+..|..+.+.+.-++|-||+++.........+.+-... +
T Consensus 101 ~~~~v~~~v~e~r~~~~~~Ig~~~~~~~~~q~~l~~f~dst~y~~v~~~l~i~s~~ei~i~~~~~a~~~skl~~~~~~e~ 180 (867)
T KOG0220|consen 101 HSPSVIVAVVEGRGLARGEIGMASIDLKNPQIILSQFADSTTYAKVITKLKILSPLEIIISNTACAVGNSKLLFTLITEN 180 (867)
T ss_pred CCCceEEEEEecCCcccceeEEEEecCCCCceehhhhhccchhHHHHhHhhccChhheeecccccccchHHHHHHHHhhc
Confidence 45568889988877777899999999999999999999999999999999999999999998743222222222222 1
Q ss_pred hcCceeeecccccccchhHHHHHHHhhcCCCCCcccccCCcccHHHHHHHHHHHHHHHcCcC-CCCCceeEEeccccccc
Q 002722 214 RCGVMLTERKKTEFKTRDLVQDLDRLVRGSVEPVRDLVSGFEIAPGALGALLSYAELLSDES-NYGNYYIRKYSLDSYMR 292 (888)
Q Consensus 214 ~~~~~v~~~~~~~F~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~AlgaLL~YL~~~~~~~-~~~~~~~~~~~~~~~M~ 292 (888)
..++.++...+..|.+..+.+.+.++.....+...-...+..++++|+|++++|++..+..- .+..+.+......+.|.
T Consensus 181 ~~~v~~~~~s~k~fns~~gl~~i~~~~~~~~s~vle~i~~k~~al~a~a~llky~~~~~~~~~~~~slri~~~gs~nT~~ 260 (867)
T KOG0220|consen 181 FKNVNFTTISRKYFNSTKGLEYIEQLCIAEFSTVLEEIQSKTYALGAAAALLKYVEEIQSSVYAPKSLRICFQGSENTAM 260 (867)
T ss_pred ccccceeehhhhhcCchhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccceeEEEeecccceee
Confidence 22344566677889988888888776653222111223456889999999999999876311 13356677888899999
Q ss_pred ccHHHHHhhcccccCCCCCCcCcHHHHhhhhcCCchHHHHHHHHhcCcCCCHHHHHHHHHHHHHHHhChHHHHHHHHHhc
Q 002722 293 LDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLK 372 (888)
Q Consensus 293 LD~~Tl~~LEI~~n~~~~~~~gSLf~lLn~~t~T~~GkRlLr~WL~~PL~d~~~I~~R~daVe~l~~~~~l~~~lr~~Lk 372 (888)
||..+..+|||+++.. -+.+.+|++++|+ |.|++|.|.||..+.+||+|...|+.|++++++|..++++...++..++
T Consensus 261 id~~~~~~lelV~~~~-~kn~~~l~~vl~~-T~t~~g~r~lRssilqpl~d~~ti~~rleaiqeL~a~~~L~~~Lr~~~k 338 (867)
T KOG0220|consen 261 IDSSSAQSLELVINNQ-YKNNHTLFGVLNY-TKTPGGYRRLRSSILQPLTDIETINMRLEAIQELLADEELFFGLRSVIK 338 (867)
T ss_pred eecccccceEEechhh-hhcccceeeeeee-eecccchhhHHhhhcccccchhhhhHHHHHHHHHhcCchHhhhhHHHHh
Confidence 9999999999998764 4457899999999 9999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHhcc---------ccHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhhHhhHhhhhhccCCchHHHHH
Q 002722 373 RISDIERLMHNLEKRR---------AGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFI 443 (888)
Q Consensus 373 ~i~DleRll~ri~~~~---------~~~~dl~~l~~~l~~~~~i~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~l~~l~ 443 (888)
+.+|+++++++...-. .....+..+..++..+..++..|.+.. ...+......+..+.+..+.
T Consensus 339 ~~~dld~~~s~~~~~~~~~~i~~~~s~I~~~~~Lk~tL~lv~~~~~al~~~~--------s~~~~e~~~~~~~~r~~~i~ 410 (867)
T KOG0220|consen 339 RFLDLDQLLSVLVQIPTQDTVNAAESKINNLIYLKHTLELVDPLKIALKNCN--------SNLLREYYGSFKDKRFGIIL 410 (867)
T ss_pred hhhhHHHHHHHHHhhhhHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhch--------hHHHHHHHHHhcchHHHHHH
Confidence 9999999998765321 112233445555665666665555421 11122222233235677777
Q ss_pred HHHHhhccCccc---------cCCcccccCCCCHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccceeeeecceeeEE
Q 002722 444 ALVETSVDLDQL---------ENGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHV 514 (888)
Q Consensus 444 ~~i~~~id~~~~---------~~~~~~i~~~~d~~Ld~lr~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~gy~ 514 (888)
+.|.+.||.+.. ..+.+.++.+.+..||-.|+.+.++..+..+...++.++..+ .+++.|+...||+
T Consensus 411 ~~i~e~I~dd~l~a~~~l~~~~qkcyAvks~i~~~LDiaR~ty~ei~~~~~~~i~~l~E~~~~----nl~~~f~sarGF~ 486 (867)
T KOG0220|consen 411 EKIKEVINDDALYAKGCLNLRTQKCYAVKSNINGFLDIARRTYTEIVDDIAGMISQLGEKFSL----NLRLSFSSARGFF 486 (867)
T ss_pred HHHHHHhhHHHHhccchhhhhccceeeecccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc----cccccccccccEE
Confidence 888888877653 234689999999999999999999999999888888888755 6888999999999
Q ss_pred EEEecCCc----cccccccCccEEEEEEecceEEEEChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 002722 515 FRITKKEE----PKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLA 590 (888)
Q Consensus 515 i~v~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~t~~l~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~l~~~~ 590 (888)
|+++.... ..+| ..|+.....++.++|+|..+.++|.++.+...++.-....++.++.+.+..+.+.+..++
T Consensus 487 ~ri~~~~~~~~~~~lP----~~fi~~~~~~~~~~~~s~~~ik~N~Rlk~~~~E~~l~te~~v~~lld~i~~~I~~L~~ia 562 (867)
T KOG0220|consen 487 IRITTDCIALPSDTLP----SEFIKISKVKNSYSFTSADLIKMNERLKEVLREIFLMTEMIVCKLLDEIYEHISCLYKLA 562 (867)
T ss_pred EEeeccccccccccCc----hhhhhhhhhcceeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 99987622 2333 238888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHhcCCCCCCCCccCCCCCccEEEEcCcCceeeeccCcccccCCccccCCCCeEEEEEecCCCChh
Q 002722 591 TMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKS 670 (888)
Q Consensus 591 ~~ia~lD~l~s~A~~a~~~~~~~~rP~~~~~~~~~l~i~~~rhp~~~~~~~~~~v~n~~~l~~~~~~~~~itGpNg~GKS 670 (888)
++++-||+++|||+.... .+||||+++++ +.|++||||++|......+|.|+..++ .+.++.+||||||||||
T Consensus 563 e~~~~lD~l~sfa~~~~~--~~y~~P~fT~s----laI~qGRHPILe~i~~ek~i~N~t~~t-~~s~f~IITGPNMsGKS 635 (867)
T KOG0220|consen 563 EAVSMLDMLCSFAHACTL--SDYVRPEFTDS----LAIKQGRHPILEKISAEKPIANNTYVT-EGSNFLIITGPNMSGKS 635 (867)
T ss_pred HHHHHHHHHHHHHHhhcc--ccccccccCCc----eeeccCCCchhhhhcccCcccCcceee-cccceEEEECCCCCcch
Confidence 999999999999998776 58999999974 999999999999877677899999887 56789999999999999
Q ss_pred HHHhhhhHHHhhhhcCcccccccccccHHHHHHHhcCCchhhhhccchhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCCh
Q 002722 671 TFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTST 750 (888)
Q Consensus 671 Tllr~i~~~~~~a~~g~~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~~~~slvllDEp~~gtd~ 750 (888)
|||||+|++++|||+||||||..+.++++++||+|||..|++..+.|+|+.||++.|.|++.++.+|||+|||+||||++
T Consensus 636 TYLKQvAl~~IMAQIGc~IPA~YaS~pIf~RIFtRmg~nDele~NsS~F~sEMke~A~Ilq~a~~~SLiVlDELgR~TSt 715 (867)
T KOG0220|consen 636 TYLKQVALCQIMAQIGSYVPAEYASFRVFKRIFTRMGTNDELERNSSTFMSEMKEAAYILQNANKNSLIVLDELGRGTST 715 (867)
T ss_pred HHHHHHHHHHHHHHhccCcchhhccchHHHHHHHHhcCchhhhhchhHHHHHHHHHHHHHHhCCcCcEEEEhhhccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhhccccccccccccEeEEEEEEEEEcCCCcEEE-eEEecCCCC-C
Q 002722 751 YDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTM-LYKVEPGAC-D 828 (888)
Q Consensus 751 ~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~y~l~~G~~-~ 828 (888)
.+|.+|.||+.|++.+ .++.++++||+.+++.++.. +|.|.|+||.++.+ ++...+ .|||..|.. +
T Consensus 716 eeGiaityAvCE~lL~-LkayTflATHFldIa~lan~---------~paVdnlHF~~q~~--eNssk~~k~kLsrg~~~~ 783 (867)
T KOG0220|consen 716 EEGIAITYAVCEYLLS-LKAYTFLATHFLDIAAIANY---------YPAVDNLHFLVQTD--ENSSKNKKYKLSRGLTEE 783 (867)
T ss_pred ccchhhHHHHHHHHHH-hhHhHHHHHHHHHHHHHhhc---------Cccccceeeeeeec--ccchhhhhhhhhhhhhhc
Confidence 9999999999999998 78999999999999999999 99999999999876 444443 699999975 6
Q ss_pred CcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCC
Q 002722 829 QSFGIHVAEFANFPESVVTLAREKAAELEDFTP 861 (888)
Q Consensus 829 ~s~gi~vA~~aglp~~vi~~A~~~~~~le~~~~ 861 (888)
.-||+.+|++.-+|++|++.|+.++-++-+...
T Consensus 784 ~~yG~~~vE~s~iPd~i~e~a~~~~t~i~A~v~ 816 (867)
T KOG0220|consen 784 KNYGLKAAEVSSLPDSIVEDAKEITTQITAQIL 816 (867)
T ss_pred ccccceEEEEecCCHHHHHhhhHHHHHHHHHHH
Confidence 799999999999999999999999988876443
|
|
| >KOG0221 consensus Mismatch repair ATPase MSH5 (MutS family) [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-81 Score=675.80 Aligned_cols=592 Identities=25% Similarity=0.429 Sum_probs=507.3
Q ss_pred ccHHHHHHHHHHHHHHHcC-----cCC--CCCceeEEecccccccccHHHHHhhcccccCCC-------CCCcCcHHHHh
Q 002722 255 EIAPGALGALLSYAELLSD-----ESN--YGNYYIRKYSLDSYMRLDSAAMRALNVLESKTD-------ANKNFSLFGLM 320 (888)
Q Consensus 255 ~~a~~AlgaLL~YL~~~~~-----~~~--~~~~~~~~~~~~~~M~LD~~Tl~~LEI~~n~~~-------~~~~gSLf~lL 320 (888)
+.+..|+|+++.++..... +.+ .....++++...+.|.||.+|+.+|+||++... -+...|||+++
T Consensus 194 ~~~~r~~g~ll~fl~~~rigv~l~~~~v~~pI~gik~f~l~~lv~iD~nTisaL~Ifp~e~~~~~~k~~~~~g~Slf~l~ 273 (849)
T KOG0221|consen 194 EAVVRALGGLLKFLGRRRIGVELEDYNVSVPILGIKKFMLTHLVNIDQNTISALQIFPSESHPSKVKSGLKEGLSLFGLL 273 (849)
T ss_pred HHHHHhhhhHHhhcccceeeeeeccccccccccceeEEeecceeeeccchHHHHHhcccccccchhhhhhhcchhHHHHH
Confidence 5568899999999986531 111 124567888899999999999999999987643 14567999999
Q ss_pred hhhcCCchHHHHHHHHhcCcCCCHHHHHHHHHHHHHHHh--ChHHHHHHHHHhccCCCHHHHHHHHHhccccHHHHHHHH
Q 002722 321 NRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVD--DTALRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLY 398 (888)
Q Consensus 321 n~~t~T~~GkRlLr~WL~~PL~d~~~I~~R~daVe~l~~--~~~l~~~lr~~Lk~i~DleRll~ri~~~~~~~~dl~~l~ 398 (888)
|+ |++..|+|+||.|+.+|++|..+|..||++|.+|+. |.+..+.+...|+++||+.-+++|++.|+.++.+|-.++
T Consensus 274 n~-c~s~~g~k~Lr~Wf~nPttd~~~l~sR~~~i~~fl~~qNa~~~~~Ls~~lgr~k~~~~~~~~~~sg~t~l~~W~~~~ 352 (849)
T KOG0221|consen 274 NR-CHSKWGEKLLRLWFTNPTTDLGELSSRLDVIQFFLLPQNADMAQMLSRLLGRIKNVPLILKRMKSGHTKLSDWQVLY 352 (849)
T ss_pred HH-HhhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhcccHHHHHHHHhcCCceechHHHHH
Confidence 99 999999999999999999999999999999999996 667889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcchhhhhhHhhHhhh-hhccCCchHHHHHHHHHhhccCcccc-CCcccccCCCCHhHHHHHHH
Q 002722 399 QSSIRLPYIRSALQQYEGQFSSLIKERYLDPL-ESLTDDDHLNKFIALVETSVDLDQLE-NGEYMISSSYDTGLSALKNE 476 (888)
Q Consensus 399 ~~l~~~~~i~~~l~~~~~~~~~~l~~~~~~~l-~~~~~~~~l~~l~~~i~~~id~~~~~-~~~~~i~~~~d~~Ld~lr~~ 476 (888)
.++...-.|.+++.+...+ ..+...+ .+.. ..+.++...++.+||++... .+.+.|.+|+|++||+.|+.
T Consensus 353 stv~~~~~i~~~~rslp~s------~~~~~~~~~~~~--~~l~eia~~~g~vIdF~~S~~~~r~Tv~~giD~elDE~r~~ 424 (849)
T KOG0221|consen 353 STVYSALGIRDACRSLPQS------IQLFRDIAQEFS--DDLHEIASLIGKVIDFEGSLAENRFTVLPGIDPELDEKRRR 424 (849)
T ss_pred HHHHHHHHHHHHHHhCccc------hhhhhHHHHHHH--HHHHHHHHHhhheeccccccccceEEecCCCChHHHHHHHH
Confidence 9999888888888764321 1111111 2223 66788889999999998764 45688999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcccceeeeecceeeEEEEEecCCccccccccCccEEEEEEecceEEEEChhHHHHHHH
Q 002722 477 QESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQ 556 (888)
Q Consensus 477 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~gy~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~~l~~~ 556 (888)
|.++...+.+..++....++.++. ++.+.|.|..||++.||+-......+..+..|..+-.+....+|++...++|++.
T Consensus 425 y~~lp~~Lt~vAr~e~~~L~~~~p-sv~~VYIPliGfllsiprl~~~~~~~d~~~~~~~mf~s~E~l~~rnart~eLD~~ 503 (849)
T KOG0221|consen 425 YMGLPSFLTEVARKELENLDSRIP-SVSVVYIPLIGFLLSIPRLPSMVEASDFENGLDFMFLSEEKLHYRNARTKELDAL 503 (849)
T ss_pred HccchHHHHHHHHHHHHhhCCCCC-ceeEEEeeceeeEEecccccchhhcCCcccchHHHhcccceeEeecccHHhHHHH
Confidence 999999999999999888876533 6999999999999999874332222111223555555667789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHhcCCCCCCCCccCCCCCccEEEEcCcCcee
Q 002722 557 YQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCV 636 (888)
Q Consensus 557 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~l~~~~~~ia~lD~l~s~A~~a~~~~~~~~rP~~~~~~~~~l~i~~~rhp~~ 636 (888)
++++..++.+.|..|+-.|...+......+.++....++||+|+|||.+|.+ ++|.||.++++. -.+.|.+||||++
T Consensus 504 ~GDIy~~i~D~et~i~~~Lq~qvl~rk~~lt~~l~laSrldvLls~a~~aa~--~gy~~P~lv~e~-~il~I~ngrh~l~ 580 (849)
T KOG0221|consen 504 LGDIYCEIRDQETLIMYQLQCQVLARKAVLTRVLDLASRLDVLLSLASAAAD--YGYSRPRLVPEV-LILRIQNGRHPLM 580 (849)
T ss_pred hhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCCccccHH-HHHHHHcCChhHH
Confidence 9999999999999999999999999999999999999999999999999986 899999999853 3478999999999
Q ss_pred eeccCcccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhcCcccccccccccHHHHHHHhcCCchhhhhcc
Q 002722 637 EAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGV 716 (888)
Q Consensus 637 ~~~~~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~g~~vp~~~~~~~~~d~i~~~~~~~d~~~~~~ 716 (888)
|... .+||||++..+.++|++.+|||||.||||.|||++|+++++||+||||||+.|+++++|+||+||+..+.+..++
T Consensus 581 e~~~-dtfvPNst~iggdkgri~vITGpNasGKSiYlkqvglivfLahIGsFVPAe~A~IGivDrI~tri~s~esv~~gq 659 (849)
T KOG0221|consen 581 ELCA-DTFVPNSTEIGGDKGRIKVITGPNASGKSIYLKQVGLIVFLAHIGSFVPAEEAEIGIVDRIFTRIHSCESVSLGQ 659 (849)
T ss_pred HHHH-HhcCCCceeecCCCceEEEEeCCCCCCceEEEeechhhhHHHhhccccchhhhhcchHHHHHHHhhhhhhhhhhh
Confidence 8754 479999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCC--CeEEEEecChhHHHHhhhccccccc
Q 002722 717 STFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIR--APTLFATHFHELTALAHENANEFNT 794 (888)
Q Consensus 717 s~f~~e~~~~~~il~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~--~~~l~~TH~~~l~~~~~~~~~~~~~ 794 (888)
||||....|++.+++.||.+||+|+||.|.||++.+|.++..+++.|+..... .+++++||+|++.+..--.
T Consensus 660 STFmiD~~Qva~aLr~AT~~SLvlIDEfGKGT~tedGlsLlasvm~~w~~rg~~~PrifvcThfheL~ne~~L~------ 733 (849)
T KOG0221|consen 660 STFMIDLNQVAKALRNATAQSLVLIDEFGKGTNTEDGLSLLASVMRHWLARGPTCPRIFVCTHFHELVNEQLLP------ 733 (849)
T ss_pred hHHHHhHHHHHHHHHHhhcCcEEEEhhccCCccccccHHHHHHHHHHHHhcCCCCCeEEEeccHHHhhhhccCC------
Confidence 99999999999999999999999999999999999999999999999987322 2477899999998643220
Q ss_pred cccccEeEEEEEEEEEcCCCcEEEeEEecCCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCCCCCChh
Q 002722 795 KQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFTPSAVISDD 868 (888)
Q Consensus 795 ~~~~~v~~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~gi~vA~~aglp~~vi~~A~~~~~~le~~~~~~~~~~~ 868 (888)
..+-++.+.|.+..+ +.+.++|+||+.+|.+..|||+++|+.+|+|++||.||++++..+++.....+++++
T Consensus 734 -~n~i~qfltm~vlr~-~ge~I~flyrv~~gl~k~sfal~~ak~~glp~~vV~Ra~~v~~ai~sg~~vk~~k~~ 805 (849)
T KOG0221|consen 734 -QNPIVQFLTMEVLRE-DGEDIVFLYRVCEGLAKASFALHTAKQAGLPDKVVARAKEVSDAIRSGKPVKPVKDL 805 (849)
T ss_pred -cchhhhhhhHHHHHh-ccCCeEEEEEeccchhhhcccchhHhhcCCCHHHHHHHHHHHHHHHcCCCchhhhhh
Confidence 023455666654332 278999999999999999999999999999999999999999999998887777654
|
|
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-69 Score=646.54 Aligned_cols=507 Identities=21% Similarity=0.286 Sum_probs=433.7
Q ss_pred cHHHHHhhcccccCCCCCCcCcHH-HHhhhhcCCchHHHHHHHHhcCcCCCHHHHHHHHHHHHHHHhChHHHHHHHHHhc
Q 002722 294 DSAAMRALNVLESKTDANKNFSLF-GLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLK 372 (888)
Q Consensus 294 D~~Tl~~LEI~~n~~~~~~~gSLf-~lLn~~t~T~~GkRlLr~WL~~PL~d~~~I~~R~daVe~l~~~~~l~~~lr~~Lk 372 (888)
+..|++.||. + -+. .+-++ |.|++|+|+|++ ++|+.|+++|++||+.|++|.. .+.......|+
T Consensus 2 ~~~~~~~Le~-~---------~i~~~l~~~-~~t~~Gk~~l~~--l~P~~~~~~i~~~l~~~~e~~~--~~~~~~~~~l~ 66 (782)
T PRK00409 2 QEKTLRVLEF-N---------KIKEQLKTF-AASELGKEKVLQ--LDPETDFEEVEELLEETDEAAK--LLRLKGLPPFE 66 (782)
T ss_pred ChhhHhhCCH-H---------HHHHHHHhH-cCCHHHHHHHHc--CCCCCCHHHHHHHHHHHHHHHH--HHHhcCCCCCC
Confidence 4456666665 1 223 34456 999999999999 6999999999999999999973 23333444689
Q ss_pred cCCCHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhhHhhHhhhhhccCCchHHHHHHHHHhhcc
Q 002722 373 RISDIERLMHNLEKRR-AGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVD 451 (888)
Q Consensus 373 ~i~DleRll~ri~~~~-~~~~dl~~l~~~l~~~~~i~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~l~~l~~~i~~~id 451 (888)
+++|++|++.|+..+. +++.|+..+..++..+..+.+.+........ ...+..+...+ ..+..+.+.|+++||
T Consensus 67 ~~~Di~~~l~r~~~g~~l~~~eL~~i~~~l~~~~~l~~~l~~~~~~~~----~~~L~~~~~~l--~~~~~l~~~i~~~id 140 (782)
T PRK00409 67 GVKDIDDALKRAEKGGVLSGDELLEIAKTLRYFRQLKRFIEDLEEEEE----LPILEEWVAKI--RTLPELEQEIHNCID 140 (782)
T ss_pred CCccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcccccc----hhHHHHHHHcC--cCcHHHHHHHHHHhC
Confidence 9999999999999764 8899999999999999999888865310000 11223333333 567788889999997
Q ss_pred CccccCCcccccCCCCHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccce--eeeecceeeEEEEEecCCcccccccc
Q 002722 452 LDQLENGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDKAL--KLDKGTQFGHVFRITKKEEPKIRKKL 529 (888)
Q Consensus 452 ~~~~~~~~~~i~~~~d~~Ld~lr~~~~~~~~~l~~~~~~~~~~~~~~~~~~l--~~~~~~~~gy~i~v~~~~~~~~~~~~ 529 (888)
. ++.|++++|++|+.+|+.+.++++++.+.++++.+..+.. +.| ++...+..+|+++|+......+++.
T Consensus 141 ~------~g~i~d~aS~eL~~iR~~~~~~~~~i~~~l~~~~~~~~~~--~~L~d~~it~r~~r~~i~vk~~~~~~~~g~- 211 (782)
T PRK00409 141 E------EGEVKDSASEKLRGIRRQLRRKKSRIREKLESIIRSKSLQ--KYLQDTIITIRNDRYVLPVKAEYKHAIKGI- 211 (782)
T ss_pred C------CCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--cccccceEEEECCEEEEEechhhhccCCCc-
Confidence 5 4679999999999999999999999999999988766532 112 3334455679999977655566532
Q ss_pred CccEEEEEEecceEEEEChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHhcC
Q 002722 530 TTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSC 609 (888)
Q Consensus 530 ~~~~~~~~~~~~~~~~~t~~l~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~l~~~~~~ia~lD~l~s~A~~a~~~ 609 (888)
|+..+.++.+.|+++.++.++++++.+++.++.+.+.+++++|...+..+.+.|..+.+++++|||++|+|.+|..
T Consensus 212 ---v~~~s~sg~t~y~ep~~~~~ln~~l~~l~~~~~~~~~~il~~l~~~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~- 287 (782)
T PRK00409 212 ---VHDQSSSGATLYIEPQSVVELNNEIRELRNKEEQEIERILKELSAKVAKNLDFLKFLNKIFDELDFIFARARYAKA- 287 (782)
T ss_pred ---eeeEECCCCEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 6777777777888888899999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCccCCCCCccEEEEcCcCceeeeccCcccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhcCccc
Q 002722 610 PTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFV 689 (888)
Q Consensus 610 ~~~~~rP~~~~~~~~~l~i~~~rhp~~~~~~~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~g~~v 689 (888)
++||+|.|++.+ .+.++++|||+++. ..+||||+.++ ..+++++|||||||||||+||++|++++|||+|+||
T Consensus 288 -~~~~~P~~~~~~--~i~l~~~rHPll~~---~~~Vpndi~l~-~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~v 360 (782)
T PRK00409 288 -LKATFPLFNDEG--KIDLRQARHPLLDG---EKVVPKDISLG-FDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPI 360 (782)
T ss_pred -CCCccceEcCCC--cEEEcCcCCceecc---CceECceeEEC-CCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCc
Confidence 789999998643 59999999999974 46999999997 457899999999999999999999999999999999
Q ss_pred cccc-ccccHHHHHHHhcCCchhhhhccchhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcC
Q 002722 690 PCDR-ASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEI 768 (888)
Q Consensus 690 p~~~-~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~ 768 (888)
||.. +.++++|+||+++|..+++..+.|+||++|++++.|++.+++++|+||||||+||||.++.+++.++++++.+ .
T Consensus 361 pa~~~~~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~-~ 439 (782)
T PRK00409 361 PANEPSEIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRK-R 439 (782)
T ss_pred ccCCCccccccceEEEecCCccchhhchhHHHHHHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHH-C
Confidence 9996 7899999999999999999999999999999999999999999999999999999999999999999999987 6
Q ss_pred CCeEEEEecChhHHHHhhhccccccccccccEeEEEEEEEEEcCCCcEEEeEEecCCCCCCcHHHHHHHHCCCCHHHHHH
Q 002722 769 RAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTL 848 (888)
Q Consensus 769 ~~~~l~~TH~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~gi~vA~~aglp~~vi~~ 848 (888)
|+++|++||++++..++.. .+.+.+++|.++ .+.+.|+|++.+|++++|||++||+++|+|++||++
T Consensus 440 ~~~vIitTH~~el~~~~~~---------~~~v~~~~~~~d----~~~l~~~Ykl~~G~~g~S~a~~iA~~~Glp~~ii~~ 506 (782)
T PRK00409 440 GAKIIATTHYKELKALMYN---------REGVENASVEFD----EETLRPTYRLLIGIPGKSNAFEIAKRLGLPENIIEE 506 (782)
T ss_pred CCEEEEECChHHHHHHHhc---------CCCeEEEEEEEe----cCcCcEEEEEeeCCCCCcHHHHHHHHhCcCHHHHHH
Confidence 9999999999999988776 788999999874 568999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 002722 849 AREKAAE 855 (888)
Q Consensus 849 A~~~~~~ 855 (888)
|++++.+
T Consensus 507 A~~~~~~ 513 (782)
T PRK00409 507 AKKLIGE 513 (782)
T ss_pred HHHHHhh
Confidence 9988753
|
|
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-63 Score=598.31 Aligned_cols=502 Identities=22% Similarity=0.258 Sum_probs=429.4
Q ss_pred cHHHHHhhcccccCCCCCCcCcHHHHhhhhcCCchHHHHHHHHhcCcCCCHHHHHHHHHHHHHHHhChHHHHHHHHHhcc
Q 002722 294 DSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKR 373 (888)
Q Consensus 294 D~~Tl~~LEI~~n~~~~~~~gSLf~lLn~~t~T~~GkRlLr~WL~~PL~d~~~I~~R~daVe~l~~~~~l~~~lr~~Lk~ 373 (888)
+..|++.||. +. =+=.+.++ |.|++|++++++ +.|+++.++|++|++.++++..... ...|.+
T Consensus 2 ~~~~l~~Lef-~~--------i~~~l~~~-~~t~~gk~~~~~--l~P~~~~~~i~~~l~~~~e~~~~~~-----~~~l~~ 64 (771)
T TIGR01069 2 REKDLIKLEF-DK--------VKENLLKQ-TFTPLGKEDAIG--LKPPKSVEESKEIIIKLTALGSIEN-----NVRFFG 64 (771)
T ss_pred ChhhHHhcCH-HH--------HHHHHHHH-cCCHHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHhhc-----cCCcCC
Confidence 4566777774 11 12245677 999999999999 8999999999999999999976432 336899
Q ss_pred CCCHHHHHHHHHhcc-ccHHH-HHHHHHHHHHHHHHHHHHhhhhcchhhhhhHhhHhhhhhccCCchHHHHHHHHHhhcc
Q 002722 374 ISDIERLMHNLEKRR-AGLQQ-IVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVD 451 (888)
Q Consensus 374 i~DleRll~ri~~~~-~~~~d-l~~l~~~l~~~~~i~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~l~~l~~~i~~~id 451 (888)
++|+++++.|+..+. +++.+ +..+..++..+..+...+... ..+ ..+..+...+ ..+..+...|.++||
T Consensus 65 ~~di~~~l~r~~~g~~l~~~e~l~~i~~~l~~~~~l~~~l~~~-~~~------~~L~~~~~~l--~~~~~l~~~i~~~id 135 (771)
T TIGR01069 65 FEDIRELLKRAELGGIVKGLEYILVIQNALKTVKHLKVLSEHV-LDL------EILFHLRLNL--ITLPPLENDIIACID 135 (771)
T ss_pred CccHHHHHHHHhcCCcCChHHHHHHHHHHHHHHHHHHHHHhcc-ccc------hHHHHHHhcC--CCcHHHHHHHHHHhC
Confidence 999999999999875 78877 999999999999888888642 111 1122222223 567788888999997
Q ss_pred CccccCCcccccCCCCHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCC---cccceeeeecceeeEEEEEecCCccccccc
Q 002722 452 LDQLENGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLP---VDKALKLDKGTQFGHVFRITKKEEPKIRKK 528 (888)
Q Consensus 452 ~~~~~~~~~~i~~~~d~~Ld~lr~~~~~~~~~l~~~~~~~~~~~~~~---~~~~l~~~~~~~~gy~i~v~~~~~~~~~~~ 528 (888)
. ++.|++++|++|+.+|+.+..+++++.+.++++.+..+.. ++..+++.++ +|+++|+......+++.
T Consensus 136 ~------~g~i~d~aS~~L~~ir~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~it~r~~---r~vipvk~~~~~~i~g~ 206 (771)
T TIGR01069 136 D------DGKVKDGASEELDAIRESLKALEEEVVKRLHKIIRSKELAKYLSDTIVTIRNG---RYVLPLKSGFKGKIKGI 206 (771)
T ss_pred C------CCEECCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhcCceEEEECC---EEEEEeeHHHhhcCCCe
Confidence 5 4688999999999999999999999999999887654421 1234555544 59999976655666632
Q ss_pred cCccEEEEEEecceEEEEChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHhc
Q 002722 529 LTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASS 608 (888)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~t~~l~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~l~~~~~~ia~lD~l~s~A~~a~~ 608 (888)
++..++++.+.++++.++.+||+++.+++.++.+.+..|+++|...+..+.+.|..+.+++++||+++|+|.+|..
T Consensus 207 ----v~~~S~sg~t~~~ep~~~~~ln~~l~~l~~~~~~e~~~il~~L~~~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~ 282 (771)
T TIGR01069 207 ----VHDTSSSGETFYIEPQAIVKLNNKLAQLKNEEECEIEKILRTLSEKVQEYLLELKFLFKEFDFLDSLQARARYAKA 282 (771)
T ss_pred ----EEEEeCCCCEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666776777777777899999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCCCCccCCCCCccEEEEcCcCceeeeccCcccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhcCcc
Q 002722 609 CPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSF 688 (888)
Q Consensus 609 ~~~~~~rP~~~~~~~~~l~i~~~rhp~~~~~~~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~g~~ 688 (888)
.+||+|.+.+.+ .+.++++|||+++. ..+|||++.+.. +.++++||||||||||||||+++++++|+|.|++
T Consensus 283 --~~~~~P~~~~~~--~i~l~~~rhPll~~---~~~vp~di~l~~-~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~ 354 (771)
T TIGR01069 283 --VKGEFPMPSFTG--KIILENARHPLLKE---PKVVPFTLNLKF-EKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIP 354 (771)
T ss_pred --CCCeeceecCCC--CEEEccccCceecC---CceEeceeEeCC-CceEEEEECCCCCCchHHHHHHHHHHHHHHhCCC
Confidence 789999997653 69999999999973 359999999963 3479999999999999999999999999999999
Q ss_pred ccccc-ccccHHHHHHHhcCCchhhhhccchhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhc
Q 002722 689 VPCDR-ASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEE 767 (888)
Q Consensus 689 vp~~~-~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~ 767 (888)
||+.. ..++++|+++++++..+++..+.|+|+++|.+++.|+..+++++||||||||+||||.++.++++++++++.+
T Consensus 355 Vpa~~~~~~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~- 433 (771)
T TIGR01069 355 IPANEHSEIPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLK- 433 (771)
T ss_pred ccCCccccccchhheeeecChHhHHhhhhhHHHHHHHHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHh-
Confidence 99987 6799999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCeEEEEecChhHHHHhhhccccccccccccEeEEEEEEEEEcCCCcEEEeEEecCCCCCCcHHHHHHHHCCCCHHHHH
Q 002722 768 IRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVT 847 (888)
Q Consensus 768 ~~~~~l~~TH~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~gi~vA~~aglp~~vi~ 847 (888)
.|+++|++||++++..++.. .+++.|++|.++ .+++.|+|+|.+|++++|||++||+++|+|++||+
T Consensus 434 ~g~~viitTH~~eL~~~~~~---------~~~v~~~~~~~d----~~~l~p~Ykl~~G~~g~S~a~~iA~~~Glp~~ii~ 500 (771)
T TIGR01069 434 QNAQVLITTHYKELKALMYN---------NEGVENASVLFD----EETLSPTYKLLKGIPGESYAFEIAQRYGIPHFIIE 500 (771)
T ss_pred cCCEEEEECChHHHHHHhcC---------CCCeEEeEEEEc----CCCCceEEEECCCCCCCcHHHHHHHHhCcCHHHHH
Confidence 79999999999999888766 788999999875 56899999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 002722 848 LAREKAAEL 856 (888)
Q Consensus 848 ~A~~~~~~l 856 (888)
+|++++.+.
T Consensus 501 ~A~~~~~~~ 509 (771)
T TIGR01069 501 QAKTFYGEF 509 (771)
T ss_pred HHHHHHHhh
Confidence 999988653
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >PF00488 MutS_V: MutS domain V C-terminus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-52 Score=435.73 Aligned_cols=233 Identities=43% Similarity=0.742 Sum_probs=200.8
Q ss_pred CCCCccCCCCCccEEEEcCcCceeeec-cCcccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhcCccccc
Q 002722 613 YTRPDINPPDVGDIILEGSRHPCVEAQ-DWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPC 691 (888)
Q Consensus 613 ~~rP~~~~~~~~~l~i~~~rhp~~~~~-~~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~g~~vp~ 691 (888)
||||+|.++. .+.+++||||+++.. .++.+||||+.++.+..++++||||||||||||||+||.+++|||+|+||||
T Consensus 1 y~~P~~~~~~--~l~i~~~~HPll~~~~~~~~~v~ndi~~~~~~~~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA 78 (235)
T PF00488_consen 1 YCRPKISEEK--SLKIKEGRHPLLEEKLENKKFVPNDIELSNNKSRIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPA 78 (235)
T ss_dssp EB-EEEESTT--EEEEEEE--TTHHHHTTTSSC--EEEEESSSSSSEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSS
T ss_pred CcccEEcCCC--CEEEEeccCCEEeccccCCceecceeecCCCceeEEEEeCCCccchhhHHHHHHHHhhhhhcCceeee
Confidence 8999999864 699999999999976 4567999999998655589999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHhcCCchhhhhccchhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCe
Q 002722 692 DRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAP 771 (888)
Q Consensus 692 ~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~ 771 (888)
+.+.++++|+|+++++..|++..+.|+|+.||++++.|++.+++++|||+||+|+||++.+|.+++++++++|.++.++.
T Consensus 79 ~~~~i~~~d~I~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~ 158 (235)
T PF00488_consen 79 ESAEIPIFDRIFTRIGDDDSIESGLSTFMAEMKRLSSILRNATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCF 158 (235)
T ss_dssp SEEEEE--SEEEEEES---SSTTSSSHHHHHHHHHHHHHHH--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-E
T ss_pred cccccccccEEEeecccccccccccccHHHhHHHHHhhhhhcccceeeecccccCCCChhHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999745899
Q ss_pred EEEEecChhHHHHhhhccccccccccccEeEEEEEEEEEcCCCcEEEeEEecCCCCCCcHHHHHHHHCCCCHHHHHHHHH
Q 002722 772 TLFATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLARE 851 (888)
Q Consensus 772 ~l~~TH~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~gi~vA~~aglp~~vi~~A~~ 851 (888)
+|++||++++.++... .+.+.++||.+... ++.++|+|++.+|.+++|||+++|+++|+|++||+||++
T Consensus 159 ~i~~TH~~~l~~~~~~---------~~~v~~~~~~~~~~--~~~~~f~Ykl~~G~~~~S~ai~iA~~~g~p~~II~rA~~ 227 (235)
T PF00488_consen 159 VIIATHFHELAELLER---------NPNVQNYHMEVEED--NDSLTFTYKLKEGICSSSYAIEIAKLAGLPEEIIERAKE 227 (235)
T ss_dssp EEEEES-GGGGGHHHH---------STTEEEEEEEEEEE--TTEEEEEEEEEES--SSTCHHHHHHHTT--HHHHHHHHH
T ss_pred EEEEeccchhHHHhhh---------Cccccccceeeeee--ccccceeEEEeECCCCCcHHHHHHHHhCcCHHHHHHHHH
Confidence 9999999999988877 78899999999876 799999999999999999999999999999999999999
Q ss_pred HHHHHhc
Q 002722 852 KAAELED 858 (888)
Q Consensus 852 ~~~~le~ 858 (888)
++++|++
T Consensus 228 i~~~l~~ 234 (235)
T PF00488_consen 228 ILKQLEE 234 (235)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9999986
|
; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B .... |
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-47 Score=393.61 Aligned_cols=213 Identities=46% Similarity=0.726 Sum_probs=200.0
Q ss_pred EEcCcCceeeeccCcccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhcCcccccccccccHHHHHHHhcC
Q 002722 628 LEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVG 707 (888)
Q Consensus 628 i~~~rhp~~~~~~~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~g~~vp~~~~~~~~~d~i~~~~~ 707 (888)
++++|||+++...+..+||||++|+.+++++++||||||+|||||+|+++++++|||+|+||||+.+.++++|+||++++
T Consensus 2 ~~~~rHPll~~~~~~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~~~i~~~~~i~~~~~ 81 (218)
T cd03286 2 FEELRHPCLNASTASSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLVDRIFTRIG 81 (218)
T ss_pred cccccCCEEecccCCCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccccEeccccEEEEecC
Confidence 67899999986655679999999998889999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhhccchhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 708 AGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 708 ~~d~~~~~~s~f~~e~~~~~~il~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
..|++..+.|+|+.||++++.|++.+++++|+|||||++||+|.++.++++++++++.+..++++|++||++++......
T Consensus 82 ~~d~~~~~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~~~ 161 (218)
T cd03286 82 ARDDIMKGESTFMVELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEFHE 161 (218)
T ss_pred cccccccCcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999987338999999999999887666
Q ss_pred ccccccccccccEeEEEEEEEEEcC----CCcEEEeEEecCCCCCCcHHHHHHHHCCCCHHHHHHH
Q 002722 788 NANEFNTKQMVGVANYHVSAHIDST----SRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLA 849 (888)
Q Consensus 788 ~~~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~y~l~~G~~~~s~gi~vA~~aglp~~vi~~A 849 (888)
.+++.++||.+.++++ .++++|+|||.+|+|++|||+++|+++|+|++||+||
T Consensus 162 ---------~~~v~~~~m~~~~~~~~~~~~~~~~~~Ykl~~G~~~~s~al~~A~~~g~p~~vi~rA 218 (218)
T cd03286 162 ---------HGGVRLGHMACAVKNESDPTIRDITFLYKLVAGICPKSYGLYVALMAGIPDGVVERA 218 (218)
T ss_pred ---------CcceEEEEEEEEEeccccCCCCceEEEEEECcCCCCCcHHHHHHHHhCcCHHHHhcC
Confidence 6889999999987631 2789999999999999999999999999999999997
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-46 Score=387.96 Aligned_cols=221 Identities=72% Similarity=1.111 Sum_probs=207.7
Q ss_pred EEcCcCceeeeccCcccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhcCcccccccccccHHHHHHHhcC
Q 002722 628 LEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVG 707 (888)
Q Consensus 628 i~~~rhp~~~~~~~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~g~~vp~~~~~~~~~d~i~~~~~ 707 (888)
++++|||+++...+..+|||+++++..++++++||||||||||||||++|.+++|+|+|+||||..+.++++++++++++
T Consensus 2 ~~~~~hpll~~~~~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~~vpa~~~~~~~~~~il~~~~ 81 (222)
T cd03285 2 LKEARHPCVEAQDDVAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVPCDSADIPIVDCILARVG 81 (222)
T ss_pred ccccCCCEEeccCCCCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcCcccEEEeccceeEeeec
Confidence 67899999998666679999999998889999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhhccchhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 708 AGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 708 ~~d~~~~~~s~f~~e~~~~~~il~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
..|.+..+.|+|+.||.+++.+++.+++|+||||||||+||++.|+.++++++++++.+..|+++|++||++++.+++++
T Consensus 82 l~d~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~~el~~~~~~ 161 (222)
T cd03285 82 ASDSQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHFHELTALADE 161 (222)
T ss_pred cccchhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEechHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999986458999999999999999998
Q ss_pred ccccccccccccEeEEEEEEEEEcCCCcEEEeEEecCCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHHHh
Q 002722 788 NANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELE 857 (888)
Q Consensus 788 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~gi~vA~~aglp~~vi~~A~~~~~~le 857 (888)
.+.+.+++|.....+.++++.|+|||.+|+|+.|||+++|+++|+|++||+||++++++++
T Consensus 162 ---------~~~i~~g~~~~~~~~~~~~~~~~Y~l~~G~~~~s~a~~~a~~~g~p~~vi~~A~~~~~~~~ 222 (222)
T cd03285 162 ---------VPNVKNLHVTALTDDASRTLTMLYKVEKGACDQSFGIHVAELANFPKEVIEMAKQKALELE 222 (222)
T ss_pred ---------CCCeEEEEEEEEEeCCCCcEeEEEEEeeCCCCCcHHHHHHHHhCcCHHHHHHHHHHHHhcC
Confidence 8899999998877633489999999999999999999999999999999999999998874
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-46 Score=384.28 Aligned_cols=216 Identities=44% Similarity=0.718 Sum_probs=200.1
Q ss_pred EEEEcCcCceeeeccCcccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhcCcccccccccccHHHHHHHh
Q 002722 626 IILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFAR 705 (888)
Q Consensus 626 l~i~~~rhp~~~~~~~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~g~~vp~~~~~~~~~d~i~~~ 705 (888)
|.|+++|||+++......+|||++++...+|++++|+||||+|||||||+++++.+++|+|+|+|+..+.++++|+|+++
T Consensus 1 ~~i~~~rHPlle~~~~~~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~ 80 (222)
T cd03287 1 ILIKEGRHPMIESLLDKSFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTR 80 (222)
T ss_pred CeeecccCCEEeccCCCCEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEE
Confidence 46899999999976556799999999988999999999999999999999999999999999999999999999999999
Q ss_pred cCCchhhhhccchhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHh
Q 002722 706 VGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALA 785 (888)
Q Consensus 706 ~~~~d~~~~~~s~f~~e~~~~~~il~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~ 785 (888)
++..|++..+.|+|+.||++++.|++.+++++|+||||||+|||+.++.++++++++++.+..++++|++||++++.++.
T Consensus 81 ~~~~d~~~~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 81 MGASDSIQHGMSTFMVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred ecCccccccccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999984489999999999999887
Q ss_pred hhccccccccccccEeEEEEEEEEEc------CCCcEEEeEEecCCCCCCcHHHHHHHHCCCCHHHHHHH
Q 002722 786 HENANEFNTKQMVGVANYHVSAHIDS------TSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLA 849 (888)
Q Consensus 786 ~~~~~~~~~~~~~~v~~~~~~~~~~~------~~~~~~~~y~l~~G~~~~s~gi~vA~~aglp~~vi~~A 849 (888)
... .+.+.++||.+.... ++++++|+|||.+|+|+.|||++||+++|+|++||+||
T Consensus 161 ~~~--------~~~v~~~~~~~~~~~~~~~~~~~~~l~~~Ykl~~G~~~~s~a~~~a~~~g~p~~vi~rA 222 (222)
T cd03287 161 RRF--------EGSIRNYHMSYLESQKDFETSDSQSITFLYKLVRGLASRSFGLNVARLAGLPKSIISRA 222 (222)
T ss_pred Hhc--------ccCeEEEEEEEEEeccccccccCCcEEEEEEECcCCCCCcHHHHHHHHhCcCHHHHhcC
Confidence 651 246999999876531 25789999999999999999999999999999999997
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >smart00533 MUTSd DNA-binding domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-42 Score=379.03 Aligned_cols=306 Identities=37% Similarity=0.569 Sum_probs=260.0
Q ss_pred cCcHHHHhhhhcCCchHHHHHHHHhcCcCCCHHHHHHHHHHHHHHHhChHHHHHHHHHhccCCCHHHHHHHHHhccccHH
Q 002722 313 NFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMHNLEKRRAGLQ 392 (888)
Q Consensus 313 ~gSLf~lLn~~t~T~~GkRlLr~WL~~PL~d~~~I~~R~daVe~l~~~~~l~~~lr~~Lk~i~DleRll~ri~~~~~~~~ 392 (888)
+||||++||+ |+|++|+|+|++|+++|++|.++|++||++|++|.++..++..++..|++++|++|++.|+..+.+++.
T Consensus 1 ~~sL~~~l~~-~~T~~G~r~L~~wl~~Pl~~~~~I~~R~~~v~~~~~~~~l~~~l~~~L~~~~Di~~~l~~~~~~~~~~~ 79 (308)
T smart00533 1 KGSLFELLNH-TKTPMGKRLLRRWLLQPLLDLKEINERLDAVEELVENPELRQKLRQLLKRIPDLERLLSRIERGRASPR 79 (308)
T ss_pred CCCHHHHHcc-CCCcHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhChHHHHHHHHHHccCCcHHHHHHHHHcCCCCHH
Confidence 4799999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcchhhhhhHhhHhhhhhccCCchHHHHHHHHHhhccCcccc-CCcccccCCCCHhHH
Q 002722 393 QIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLE-NGEYMISSSYDTGLS 471 (888)
Q Consensus 393 dl~~l~~~l~~~~~i~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~l~~l~~~i~~~id~~~~~-~~~~~i~~~~d~~Ld 471 (888)
||..+++++..++.+.+.+........ ...+..+.. +....+..+.+...+.+... .+++.|++|+|++||
T Consensus 80 el~~l~~~l~~~~~l~~~l~~~~~~~~----~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~s~~Ld 151 (308)
T smart00533 80 DLLRLYDSLEGLKEIRQLLESLDGPLL----GLLLKVILE----PLLELLELLLELLNDDDPLEVNDGGLIKDGFDPELD 151 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHH----HHHHHhhcc----chHHHHHHHHHHhccCCcccccCCCeeCCCCCHHHH
Confidence 999999999999999988876421100 011111100 11111222222222332222 234789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCcccceeeeecceeeEEEEEecCCccccccccCccEEEEEEecceEEEEChhHH
Q 002722 472 ALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLK 551 (888)
Q Consensus 472 ~lr~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~gy~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~ 551 (888)
++|+.++++++++++..+++.++++.+ .+++.|.+..||+++|+.+....+|+ . |+..+++++++||+|+++.
T Consensus 152 ~lr~~~~~l~~~l~~~~~~~~~~~~~~---~l~~~~~~~~g~~i~v~~~~~~~~~~--~--~~~~s~s~~~~~~~~~~~~ 224 (308)
T smart00533 152 ELREKLEELEEELEELLKKEREELGID---SLKLGYNKVHGYYIEVTKSEAKKVPK--D--FIRRSSLKNTERFTTPELK 224 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC---ceEEeEeccEEEEEEecchhhccCCh--H--HHHHhhhcccceeeCHHHH
Confidence 999999999999999999999888764 78899999999999999876666663 3 8899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHhcCCCCCCCCccCCCCCccEEEEcC
Q 002722 552 KLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGS 631 (888)
Q Consensus 552 ~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~l~~~~~~ia~lD~l~s~A~~a~~~~~~~~rP~~~~~~~~~l~i~~~ 631 (888)
+|++++.++..++.+.+..+++++.+.+.++.+.|..+++++|+|||++|+|.+|.. ++||||+|++++ .+.+++|
T Consensus 225 ~l~~~~~~~~~~~~~~~~~i~~~l~~~i~~~~~~l~~~~~~i~~lD~l~s~a~~a~~--~~~~~P~i~~~~--~l~i~~~ 300 (308)
T smart00533 225 ELENELLEAKEEIERLEKEILRELLEKVLEYLEELRALAEALAELDVLLSLATLAAE--GNYVRPEFVDSG--ELEIKNG 300 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCcCCeeCCCC--CEEEeeC
Confidence 999999999999999999999999999999999999999999999999999999986 789999999753 5999999
Q ss_pred cCceeee
Q 002722 632 RHPCVEA 638 (888)
Q Consensus 632 rhp~~~~ 638 (888)
|||+++.
T Consensus 301 rHPlle~ 307 (308)
T smart00533 301 RHPVLEL 307 (308)
T ss_pred CCCcccC
Confidence 9999973
|
|
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-43 Score=361.72 Aligned_cols=213 Identities=53% Similarity=0.811 Sum_probs=200.1
Q ss_pred EEcCcCceeeecc-CcccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhcCcccccccccccHHHHHHHhc
Q 002722 628 LEGSRHPCVEAQD-WVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARV 706 (888)
Q Consensus 628 i~~~rhp~~~~~~-~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~g~~vp~~~~~~~~~d~i~~~~ 706 (888)
|+++|||+++... ...+|||+++++.++ ++++||||||||||||||+++++.+++|+|+++|+..+.+++++++++++
T Consensus 2 i~~~~hp~~~~~~~~~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i~~~~ 80 (216)
T cd03284 2 IEGGRHPVVEQVLDNEPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRIFTRI 80 (216)
T ss_pred cccccCCEEeeccCCCceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceeeEeccC
Confidence 6889999999754 357999999998654 89999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhhccchhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhh
Q 002722 707 GAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAH 786 (888)
Q Consensus 707 ~~~d~~~~~~s~f~~e~~~~~~il~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~ 786 (888)
+..|++..+.|+|+.|+.+++.++..+++++++|||||++||++.|+.++++++++++.+..++++|++||++++.++++
T Consensus 81 ~~~~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~~~l~~l~~ 160 (216)
T cd03284 81 GASDDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHYHELTELEG 160 (216)
T ss_pred CchhhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCcHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999899999998733899999999999999998
Q ss_pred hccccccccccccEeEEEEEEEEEcCCCcEEEeEEecCCCCCCcHHHHHHHHCCCCHHHHHHHHHH
Q 002722 787 ENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREK 852 (888)
Q Consensus 787 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~gi~vA~~aglp~~vi~~A~~~ 852 (888)
. .+.+.+++|.+..+ .++++|+|++.+|.++.|||+++|+++|+|++||+||+++
T Consensus 161 ~---------~~~v~~~~~~~~~~--~~~l~~~ykl~~G~~~~s~a~~~a~~~g~~~~ii~rA~~~ 215 (216)
T cd03284 161 K---------LPRVKNFHVAVKEK--GGGVVFLHKIVEGAADKSYGIEVARLAGLPEEVIERAREI 215 (216)
T ss_pred c---------CCCeEEEEEEEEee--CCeEEEEEEECcCCCCCcHHHHHHHHhCcCHHHHHHHHHh
Confidence 8 88999999988766 7899999999999999999999999999999999999986
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >COG1193 Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=398.20 Aligned_cols=480 Identities=24% Similarity=0.301 Sum_probs=399.7
Q ss_pred HhhhhcCCchHHHHHHHHhcCcCCCHHHHHHHHHHHHHHHhChHHHHHHHHHhccCCCHHHHHHHHHhc-cccHHHHHHH
Q 002722 319 LMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMHNLEKR-RAGLQQIVKL 397 (888)
Q Consensus 319 lLn~~t~T~~GkRlLr~WL~~PL~d~~~I~~R~daVe~l~~~~~l~~~lr~~Lk~i~DleRll~ri~~~-~~~~~dl~~l 397 (888)
+..+ +.|+.|+-.|+. +.|..+.+.|+..++-++++......... -.+.++.|+.-.+.|+..+ ...+.++..+
T Consensus 16 ~~~~-~~s~~g~~~~~~--l~p~~~~~~i~~~~~e~~~~~~~~~~~g~--~~~~~l~~i~~~l~~~e~g~~l~~~el~~i 90 (753)
T COG1193 16 LASY-AQSSLGLEELKN--LKPRTDLELIEEELSETAEALDILEDEGL--PPLGGLNDVSEALGRLEKGGRLHVEELLEI 90 (753)
T ss_pred HHHh-ccCHHHHHHHHh--cCccccHHHHHHHHHHHHHHHHHHhccCC--CCchhhhhhHHHHHHHhhcccCCHHHHHHH
Confidence 5667 999999999999 99999999999999999887653221000 1477888999999998854 5788999999
Q ss_pred HHHHHHHHHHHHHHhhhhcchhhhhhHhhHhhhhhccCCchHHHHHHHHHhhccCccccCCcccccCCCCHhHHHHHHHH
Q 002722 398 YQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALKNEQ 477 (888)
Q Consensus 398 ~~~l~~~~~i~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~l~~l~~~i~~~id~~~~~~~~~~i~~~~d~~Ld~lr~~~ 477 (888)
...+.....++..+...... . ....... ..+.++...+...+|. ++.|.+..++.|+.+|..+
T Consensus 91 ~~~l~~~~~lkr~~~~~e~~-----~----~~~~~~~--~~~~~l~~~i~~~id~------~g~i~d~as~~l~~ir~~l 153 (753)
T COG1193 91 SDFLRGFRALKRAIKKLERI-----K----RTLALAL--IELSDLELEINIPIDD------DGLIKDRASFELDAIRRQL 153 (753)
T ss_pred HHHHHHHHHHHHHHHHhhhH-----H----HHHHHhh--hcchHHHHHHhhhhcc------cccccccccHHHHHHHhhh
Confidence 88888888877777654311 0 1111112 4566777777777764 5678999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhc-CC-CcccceeeeecceeeEEEEEecCCccccccccCccEEEEEEecceEEEEChhHHHHHH
Q 002722 478 ESLERQIHSLHKQTASDL-DL-PVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGD 555 (888)
Q Consensus 478 ~~~~~~l~~~~~~~~~~~-~~-~~~~~l~~~~~~~~gy~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~~l~~ 555 (888)
....+.+.+.++.+.+.- .. -.+..+... .-.|++++.......+++. .+..++++++.+..|..+..+++
T Consensus 154 r~~~~~i~~~l~~~~~~~~~~~L~e~~v~~r---~~r~vlpvk~~fk~~i~gi----v~d~sssg~tl~ieP~~vv~l~n 226 (753)
T COG1193 154 RDLEEEIRDKLESLIRSKEAKYLQDRIVTTR---DGREVLPVKAEFKGAIKGI----VHDTSSSGATLYIEPRSVVKLNN 226 (753)
T ss_pred HHHHHHHHHHHHHHHhhhhhHhhhhceEecc---CCeEEeHHHHHhhhhcCce----EeecccccCeeeecchHHHhhcc
Confidence 888888777776665433 11 011122222 2248888754444555543 56677778889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHhcCCCCCCCCccCCCCCccEEEEcCcCce
Q 002722 556 QYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPC 635 (888)
Q Consensus 556 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~l~~~~~~ia~lD~l~s~A~~a~~~~~~~~rP~~~~~~~~~l~i~~~rhp~ 635 (888)
++..+..+.......+++.+...+..+.+.+..+...++++|++.+-+.++.. ..+++|.+.++ ..+.+.++|||+
T Consensus 227 ~~~~l~~eE~~e~e~il~~lsa~v~~~~~~l~~~~~~~~~lD~i~Ak~~~~~~--~~~v~P~~~~~--~~l~l~~~~HPl 302 (753)
T COG1193 227 ELRALLVEEDEEEERILRELSALVAPVIPELEILLEIIGELDFIEAKVRYAKA--LKGVKPDFSND--GVLELLDARHPL 302 (753)
T ss_pred HhhhhhccchHhHHHHHHHHHHHHhhhhHHHHHHHHHhhhhHHHHHHHHHHHh--hccCCCccCCC--ceEEeccccCcc
Confidence 99999999999999999999999999999999999999999999999999986 78999999964 359999999999
Q ss_pred eeeccCcccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhcCcccccccc-cccHHHHHHHhcCCchhhhh
Q 002722 636 VEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRA-SISVRDCIFARVGAGDCQLR 714 (888)
Q Consensus 636 ~~~~~~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~g~~vp~~~~-~~~~~d~i~~~~~~~d~~~~ 714 (888)
+.. .||+++.+.. .-..++|||||++|||+.|++++++.+|+|.|.++|+... +++.|+.+|..+|..+++.+
T Consensus 303 l~~-----~v~~~i~~~~-e~~~l~ITGpN~GGKtvtLKTlgl~~lm~q~gl~i~a~~gsei~~F~~i~aDIGDeQsIeq 376 (753)
T COG1193 303 LKE-----DVPNDLELGE-ELDRLIITGPNTGGKTVTLKTLGLLRLMAQSGLPIPALEGSELPVFVKIFADIGDEQSIEQ 376 (753)
T ss_pred Ccc-----cccccccccc-ccceeeEecCCCCcceehHHHHHHHHHHHHcCCCeeccCCCcchhHHHhhhccCcHHHHHH
Confidence 983 2899999964 3468999999999999999999999999999999999987 89999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhhccccccc
Q 002722 715 GVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNT 794 (888)
Q Consensus 715 ~~s~f~~e~~~~~~il~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~~~~~~~~ 794 (888)
..|||+++|..++.++..+. +|+++||.|+||||.+|.+++.++++++.+ .++.++.+||+.++..++..
T Consensus 377 sLSTFSshm~~i~~il~~~d--sLvl~DElg~GTdp~EgaaLai~ile~l~~-~~~~~~~tTH~~elk~~~~~------- 446 (753)
T COG1193 377 SLSTFSSHMTNIVEILEKAD--SLVLFDELGSGTDPDEGAALAIAILEDLLE-KPAKIVATTHYRELKALAAE------- 446 (753)
T ss_pred HHhhhHHHHHHHHHHHhhcc--hhHHHHHhhcCCCcchhHHHHHHHHHHHHh-cccceehHhhHHHHHHHHhc-------
Confidence 99999999999999995554 999999999999999999999999999998 79999999999999988877
Q ss_pred cccccEeEEEEEEEEEcCCCcEEEeEEecCCCCCCcHHHHHHHHCCCCHHHHHHHHHHH
Q 002722 795 KQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKA 853 (888)
Q Consensus 795 ~~~~~v~~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~gi~vA~~aglp~~vi~~A~~~~ 853 (888)
.+.+.|..|.+. .+++.++|++..|..++||++++|...|+|..+|++|+...
T Consensus 447 --~~~v~nas~~fd----~etL~ptY~l~~G~~g~S~Af~ia~rlGl~~~iie~a~~~~ 499 (753)
T COG1193 447 --REGVENASMEFD----AETLRPTYRLLEGVPGRSNAFDIALRLGLPEPIIEEAKTEF 499 (753)
T ss_pred --chhhhchhhhhh----HHHhhHHHHHhcCCcccchHHHHHHHcCCCHHHHHHHHHhc
Confidence 788999988876 56899999999999999999999999999999999998654
|
|
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=341.32 Aligned_cols=201 Identities=41% Similarity=0.650 Sum_probs=187.9
Q ss_pred EEcCcCceeeeccCcccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhcCcccccccccccHHHHHHHhcC
Q 002722 628 LEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVG 707 (888)
Q Consensus 628 i~~~rhp~~~~~~~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~g~~vp~~~~~~~~~d~i~~~~~ 707 (888)
|+++|||+++.. ..++++|+++|+...|++++|+||||+||||++|+++++++|+|+|+||||..+.++++++++++++
T Consensus 2 i~~~~hpll~~~-~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~~~~ 80 (204)
T cd03282 2 IRDSRHPILDRD-KKNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLS 80 (204)
T ss_pred cccccCCeEecc-CCcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeEecC
Confidence 678999999863 4569999999999889999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhhccchhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 708 AGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 708 ~~d~~~~~~s~f~~e~~~~~~il~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
..|++..+.|+|+.||+++..+++.+++++|+|||||++||||.++.++++++++++.+ .|+++|++||++++++....
T Consensus 81 ~~d~~~~~~S~fs~e~~~~~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~-~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 81 NDDSMERNLSTFASEMSETAYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIK-KESTVFFATHFRDIAAILGN 159 (204)
T ss_pred CccccchhhhHHHHHHHHHHHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECChHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999988 59999999999999987766
Q ss_pred ccccccccccccEeEEEEEEEEEcCCCcEEEeEEecCCCCC-CcHHHHHHHHCC
Q 002722 788 NANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACD-QSFGIHVAEFAN 840 (888)
Q Consensus 788 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~y~l~~G~~~-~s~gi~vA~~ag 840 (888)
.+.+.++||.....+ ++++.|+||+.+|+|. .||||++||+..
T Consensus 160 ---------~~~v~~~~~~~~~~~-~~~~~~~ykl~~G~~~~~~~g~~~a~~~~ 203 (204)
T cd03282 160 ---------KSCVVHLHMKAQSIN-SNGIEMAYKLVLGLYRIVDDGIRFVRVLA 203 (204)
T ss_pred ---------CCCeEEEEEEEEEcC-CCceeeEEEEeeCCCCCCccHHHHHHHhh
Confidence 688999999887643 4788999999999999 999999999864
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=343.73 Aligned_cols=204 Identities=38% Similarity=0.649 Sum_probs=185.2
Q ss_pred EEcCcCceeeeccCcccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhcCcccccccccccHHHHHHHhcC
Q 002722 628 LEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVG 707 (888)
Q Consensus 628 i~~~rhp~~~~~~~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~g~~vp~~~~~~~~~d~i~~~~~ 707 (888)
|+++|||+++.. ...+||||+.++.+.+++++||||||+|||||||+++.+.+++|+|+++|+..+.++++|+++++++
T Consensus 2 i~~~rHPll~~~-~~~~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~ 80 (213)
T cd03281 2 IQGGRHPLLELF-VDSFVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMS 80 (213)
T ss_pred cccccCCEEecc-CCceEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeC
Confidence 688999999863 3469999999975444899999999999999999999999999999999999999999999999999
Q ss_pred CchhhhhccchhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhc--CCCeEEEEecChhHHHHh
Q 002722 708 AGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEE--IRAPTLFATHFHELTALA 785 (888)
Q Consensus 708 ~~d~~~~~~s~f~~e~~~~~~il~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~--~~~~~l~~TH~~~l~~~~ 785 (888)
..+++..+.|+|+.||++++.++..+++++|+|||||++|||+.++.++++++++++.+. .++++|++||++++....
T Consensus 81 ~~~si~~~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 81 SRESVSSGQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred CccChhhccchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999762 135899999999998866
Q ss_pred h--hccccccccccccEeEEEEEEEEEcC----CCcEEEeEEecCCCCCCcHHHHHHHHCCC
Q 002722 786 H--ENANEFNTKQMVGVANYHVSAHIDST----SRKLTMLYKVEPGACDQSFGIHVAEFANF 841 (888)
Q Consensus 786 ~--~~~~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~y~l~~G~~~~s~gi~vA~~agl 841 (888)
. . .+.+.++||.+.++++ .++++|+|||.+|++++|||++||+++|+
T Consensus 161 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~a~~~a~~~g~ 213 (213)
T cd03281 161 LLPE---------RLKIKFLTMEVLLNPTSTSPNEDITYLYRLVPGLADTSFAIHCAKLAGI 213 (213)
T ss_pred hhcc---------CCceEEEEEEEEEcCCccCCCCcEEEEEEEeeCCCCCCHHHHHHHHcCC
Confidence 4 3 5789999999877632 48999999999999999999999999996
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-39 Score=324.63 Aligned_cols=184 Identities=57% Similarity=0.888 Sum_probs=174.3
Q ss_pred EEEEEecCCCChhHHHhhhhHHHhhhhcCcccccccccccHHHHHHHhcCCchhhhhccchhHHHHHHHHHHHHhCCCCc
Q 002722 658 FQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRS 737 (888)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~~~~~a~~g~~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~~~~s 737 (888)
+++||||||||||||||+++.+.++||+|+||||+.+.++++|+++++++..+++..+.|+|+.||++++.++..+++|+
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~ 80 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENS 80 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCe
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhhccccccccccccEeEEEEEEEEEcCCCcEE
Q 002722 738 LIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLT 817 (888)
Q Consensus 738 lvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 817 (888)
|+|+|||++|||+.++..+++++++++.++.++++|++||++++.++++. .+++.++||.+..+ ++++.
T Consensus 81 llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~---------~~~v~~~~~~~~~~--~~~~~ 149 (185)
T smart00534 81 LVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADE---------HPGVRNLHMSADEE--TENLT 149 (185)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhc---------CccceEEEEEEEEe--cCcee
Confidence 99999999999999999998999999876338999999999999998887 78899999998876 67899
Q ss_pred EeEEecCCCCCCcHHHHHHHHCCCCHHHHHHHHHH
Q 002722 818 MLYKVEPGACDQSFGIHVAEFANFPESVVTLAREK 852 (888)
Q Consensus 818 ~~y~l~~G~~~~s~gi~vA~~aglp~~vi~~A~~~ 852 (888)
|+|++.+|++..|||+++|+++|+|++||+||+++
T Consensus 150 ~~Y~l~~G~~~~s~a~~~a~~~g~~~~i~~~a~~~ 184 (185)
T smart00534 150 FLYKLTPGVAGKSYGIEVAKLAGLPKEVIERAKEI 184 (185)
T ss_pred EEEEEeECCCCCcHHHHHHHHhCCCHHHHHHHHHh
Confidence 99999999999999999999999999999999875
|
|
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=317.66 Aligned_cols=196 Identities=29% Similarity=0.405 Sum_probs=181.0
Q ss_pred EEcCcCceeeeccCcccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhcCcccccccccccHHHHHHHhcC
Q 002722 628 LEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVG 707 (888)
Q Consensus 628 i~~~rhp~~~~~~~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~g~~vp~~~~~~~~~d~i~~~~~ 707 (888)
++++|||+++. .++|+|+++++ .|++++||||||||||||||++++.+++++.|+++|+..+.++ .+.+|.+++
T Consensus 2 ~~~~~hp~~~~---~~~v~n~i~l~--~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q-~~~l~~~~~ 75 (199)
T cd03283 2 AKNLGHPLIGR---EKRVANDIDME--KKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELP-PVKIFTSIR 75 (199)
T ss_pred CcccCCCeecC---CCeecceEEEc--CCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcc-cceEEEecc
Confidence 67899999983 46999999996 4699999999999999999999999999999999999988888 788999999
Q ss_pred CchhhhhccchhHHHHHHHHHHHHhCC--CCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHh
Q 002722 708 AGDCQLRGVSTFMQEMLETASILKGAT--DRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALA 785 (888)
Q Consensus 708 ~~d~~~~~~s~f~~e~~~~~~il~~~~--~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~ 785 (888)
..|++..+.|.|..++.++..++..+. +|+++|+|||++|||+.++..+.+++++.+.+ .+.++|++||+++++...
T Consensus 76 ~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~-~~~tiiivTH~~~~~~~~ 154 (199)
T cd03283 76 VSDDLRDGISYFYAELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKN-KNTIGIISTHDLELADLL 154 (199)
T ss_pred chhccccccChHHHHHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHH-CCCEEEEEcCcHHHHHhh
Confidence 999999999999999999999999988 99999999999999999999887888888876 589999999999998877
Q ss_pred hhccccccccccccEeEEEEEEEEEcCCCcEEEeEEecCCCCCCcHHHHHHHHCCC
Q 002722 786 HENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANF 841 (888)
Q Consensus 786 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~gi~vA~~agl 841 (888)
+. .+++.++||.+..+ +++++|+||+.+|+|+.|||+++|+.+|+
T Consensus 155 ~~---------~~~v~~~~~~~~~~--~~~~~~~y~~~~G~~~~s~~~~~a~~~g~ 199 (199)
T cd03283 155 DL---------DSAVRNYHFREDID--DNKLIFDYKLKPGVSPTRNALRLMKKIGI 199 (199)
T ss_pred hc---------CCCeEEEEEEEEEE--CCeeeEEEEeCCCCCCCcHHHHHHHHcCC
Confidence 66 78999999999887 78999999999999999999999999996
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=313.78 Aligned_cols=197 Identities=35% Similarity=0.485 Sum_probs=180.0
Q ss_pred EEcCcCceeeeccCcccccCCccccCCCC-eEEEEEecCCCChhHHHhhhhHHHhhhhcCccccccc-ccccHHHHHHHh
Q 002722 628 LEGSRHPCVEAQDWVNFIPNDCKLIRGKS-WFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDR-ASISVRDCIFAR 705 (888)
Q Consensus 628 i~~~rhp~~~~~~~~~~v~n~~~l~~~~~-~~~~itGpNg~GKSTllr~i~~~~~~a~~g~~vp~~~-~~~~~~d~i~~~ 705 (888)
|+++|||+++.. ...+||+++++. ++ ++++||||||||||||||+++.+.+++|+|+++|+.. ..++.+++++++
T Consensus 2 ~~~~~hp~~~~~-~~~~~~~~~~i~--~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~~~~~~~~~~~ 78 (200)
T cd03280 2 LREARHPLLPLQ-GEKVVPLDIQLG--ENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIFAD 78 (200)
T ss_pred CcccCCCEEecc-CCceEcceEEEC--CCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccccCcCccEEEEe
Confidence 789999999965 567999999985 44 6999999999999999999999999999999999986 568889999999
Q ss_pred cCCchhhhhccchhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHh
Q 002722 706 VGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALA 785 (888)
Q Consensus 706 ~~~~d~~~~~~s~f~~e~~~~~~il~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~ 785 (888)
++..+.+..+.|+|+.||+++..+++.+++|+++|+|||++|||+.++..+...+++.+.+ .++++|++||++++..++
T Consensus 79 lg~~~~l~~~~s~fs~g~~~~~~i~~~~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~-~~~~vi~~tH~~~l~~~~ 157 (200)
T cd03280 79 IGDEQSIEQSLSTFSSHMKNIARILQHADPDSLVLLDELGSGTDPVEGAALAIAILEELLE-RGALVIATTHYGELKAYA 157 (200)
T ss_pred cCchhhhhcCcchHHHHHHHHHHHHHhCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECCHHHHHHHH
Confidence 9999999999999999999999999989999999999999999999999997788888876 589999999999998999
Q ss_pred hhccccccccccccEeEEEEEEEEEcCCCcEEEeEEecCCCCCCcHHHHHHHHCCC
Q 002722 786 HENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANF 841 (888)
Q Consensus 786 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~gi~vA~~agl 841 (888)
++ ...+.++++.++ .+++.|+||+++|++++|||+++|+.+|+
T Consensus 158 d~---------~~~l~~g~l~~~----~~~~~~~ykl~~G~~~~s~a~~~a~~~g~ 200 (200)
T cd03280 158 YK---------REGVENASMEFD----PETLKPTYRLLIGVPGRSNALEIARRLGL 200 (200)
T ss_pred hc---------CCCeEEEEEEEe----cCcccEEEEEeECCCCCcHHHHHHHHcCC
Confidence 88 778889988765 56799999999999999999999999996
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=310.07 Aligned_cols=200 Identities=50% Similarity=0.813 Sum_probs=185.4
Q ss_pred EEcCcCceeeec-cCcccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhcCcccccccccccHHHHHHHhc
Q 002722 628 LEGSRHPCVEAQ-DWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARV 706 (888)
Q Consensus 628 i~~~rhp~~~~~-~~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~g~~vp~~~~~~~~~d~i~~~~ 706 (888)
++++|||+++.. ....+||||++++ .|++++||||||||||||||++++..+++|.|+++|+..+.+++++++++++
T Consensus 2 ~~~~~~p~l~~~~~~~~~~~~~~~l~--~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~~ 79 (202)
T cd03243 2 IKGGRHPVLLALTKGETFVPNDINLG--SGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRI 79 (202)
T ss_pred cccccCCEEeccccCCceEeeeEEEc--CCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEEe
Confidence 688999999864 3457999999995 5789999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhhccchhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhh
Q 002722 707 GAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAH 786 (888)
Q Consensus 707 ~~~d~~~~~~s~f~~e~~~~~~il~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~ 786 (888)
+..+.+..+.|+|+.|++++..++..+.+|+++|+|||++|||+.++..+.+.+++.+.+ .++++|++||++++...++
T Consensus 80 ~~~d~i~~~~s~~~~e~~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~-~~~~vi~~tH~~~~~~~~~ 158 (202)
T cd03243 80 GAEDSISDGRSTFMAELLELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLE-KGCRTLFATHFHELADLPE 158 (202)
T ss_pred cCcccccCCceeHHHHHHHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCeEEEECChHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999998888888876 5899999999999999888
Q ss_pred hccccccccccccEeEEEEEEEEEcCCCcEEEeEEecCCCCCCcHHHHHHHHCCC
Q 002722 787 ENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANF 841 (888)
Q Consensus 787 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~gi~vA~~agl 841 (888)
+ .+.+.+++|....+ .+++.|+||+.+|.+++|||+.+|+..|+
T Consensus 159 ~---------~~~l~~~~~~~~~~--~~~~~~~ykl~~g~~~~~~a~~~~~~~g~ 202 (202)
T cd03243 159 Q---------VPGVKNLHMEELIT--TGGLTFTYKLIDGICDPSYALQIAELAGL 202 (202)
T ss_pred c---------CCCeEEEEEEEEec--CCeeeEEEEEeECCCCCcHHHHHHHHcCC
Confidence 7 78899999988765 67899999999999999999999999986
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >PF01624 MutS_I: MutS domain I C-terminus | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.2e-29 Score=231.33 Aligned_cols=102 Identities=24% Similarity=0.383 Sum_probs=86.0
Q ss_pred ccHHHHHhcCCCC-CCeEEEEecCceeeehhhhHHHHHHHhhhhhhhhhccCCCCCCCceeecCHHHHHHHHHHHHhhcC
Q 002722 19 RGFLSFYKTLPND-TRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLGTGSDALSSVSVSKNMFETIARDLLLERT 97 (888)
Q Consensus 19 t~~~~qy~~ik~~-~d~ilffr~GdFYe~f~eDA~~~a~~l~~~~~~l~~~~~~~~~~p~~gvp~~~~~~yl~~Lv~~~G 97 (888)
|||++||+++|++ ||+|+|||+|||||+|++||..+|+.|+++++..+ .+ ...++||||||.++++.|+++|| .+|
T Consensus 1 Tp~~~~y~~lk~k~~d~i~lf~~G~fYe~y~~DA~~~a~~l~~~~~~~~-~~-~~~~~~~~gfp~~~l~~~l~~Ll-~~G 77 (113)
T PF01624_consen 1 TPFEQQYWELKEKYPDTIVLFQVGDFYEAYGEDAEFVAEILGLKLSKRK-TG-GGKSVPMAGFPKSQLDKYLKKLL-EAG 77 (113)
T ss_dssp -HHHHHHHHHHCTSTTSEEEEEETTEEEEECHHHHHHHHHHTSSSEEEE-CS-SSECEEEEEEEGGGHHHHHHHHH-HTT
T ss_pred ChHHHHHHHHHhhCCCeEEEEEcCCEEEEEccCHHHHHHhccceeeecc-cc-ccccccEecccHHHHHHHHHHHH-HcC
Confidence 8999999999999 99999999999999999999999999999865321 11 12239999999999999999999 889
Q ss_pred CeEEEEEeccC--------CcceeEEecCCCCccc
Q 002722 98 DHTLELYEGSG--------SNWRLVKSGTPGNLGS 124 (888)
Q Consensus 98 ~ykVai~eQ~e--------~~R~v~rviTPGt~~~ 124 (888)
|||+||||.+ .+|+|++|+||||+.+
T Consensus 78 -~~V~i~~q~~~~~~~~~~~~R~v~~i~TpGt~~~ 111 (113)
T PF01624_consen 78 -YRVAIYEQVETPSETKGLIEREVTRIYTPGTLID 111 (113)
T ss_dssp --EEEEEEE-S-HHHHSSS--EEEEEEEBTTS-TS
T ss_pred -CEEEEEEecCCccccCCCccEEEEEEECcCeecC
Confidence 9999999997 4799999999999853
|
; InterPro: IPR007695 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the N-terminal domain of proteins in the MutS family of DNA mismatch repair proteins, as well as closely related proteins. The N-terminal domain of MutS is responsible for mismatch recognition and forms a 6-stranded mixed beta-sheet surrounded by three alpha-helices, which is similar to the structure of tRNA endonuclease. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein.; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 3THY_B 3THZ_B 3THW_B 3THX_B 2WTU_A 1OH7_A .... |
| >PF05192 MutS_III: MutS domain III C-terminus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=239.61 Aligned_cols=202 Identities=32% Similarity=0.536 Sum_probs=159.9
Q ss_pred HHHHHhhcccccCCCCCCcCcHHHHhhhhcCCchHHHHHHHHhcCcCCCHHHHHHHHHHHHHHHhChHHHHHHHHHhccC
Q 002722 295 SAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRI 374 (888)
Q Consensus 295 ~~Tl~~LEI~~n~~~~~~~gSLf~lLn~~t~T~~GkRlLr~WL~~PL~d~~~I~~R~daVe~l~~~~~l~~~lr~~Lk~i 374 (888)
++|+++|||+++..+++++||||++||+ |.|++|+|+|++||++|++|+++|++||++|++|.+|+.++..++..|+++
T Consensus 1 ~~Tl~~L~i~~~~~~~~~~~sL~~~ln~-t~T~~Gkr~L~~~l~~P~~d~~~I~~R~~~v~~~~~n~~~~~~~~~~l~~~ 79 (204)
T PF05192_consen 1 ANTLKSLEIFENSRSGKKKGSLFSLLNR-TSTPMGKRLLRSWLLQPLTDIEEIEKRQDAVEEFLQNEELREELRSILKKI 79 (204)
T ss_dssp HHHHHHTTSSSBTTTSSSSTSHHHHH----SSHHHHHHHHHHHHS-BS-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTC
T ss_pred ChhHHhccCCCCCCCCCCCCcHHHHHhc-CCChHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcc
Confidence 5899999999988788889999999999 999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhhHhhHhhhhhccCCchHHHHHHHHHhhccCcc
Q 002722 375 SDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQ 454 (888)
Q Consensus 375 ~DleRll~ri~~~~~~~~dl~~l~~~l~~~~~i~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~l~~l~~~i~~~id~~~ 454 (888)
+|+++++.|+..+++++++|..+++++..+..+.+.+...-... +.+..+.+.+ +++..+.+.|++++|.+.
T Consensus 80 ~di~~~l~~l~~~~~~~~~~~~l~~~l~~~~~i~~~~~~~~~~~------~~L~~l~~~l--~~~~~l~~~i~~~id~~~ 151 (204)
T PF05192_consen 80 PDIERILKRLRSGRASPQDLLKLYKTLRSIIEIKKLLSERLESS------PLLRKLLSSL--PDFSELLDEIESTIDEDK 151 (204)
T ss_dssp -SHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCTSSST------HHHHHHHHHH--CSHHHHHHHHHHHBHTS-
T ss_pred chHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHhhcccH------HHHHHHHHhc--ccHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999998887754321100 1122222222 346666677777776642
Q ss_pred c--cCCcccccCCCCHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccceeeeecceeeEEEEEecCCccccccccCcc
Q 002722 455 L--ENGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQ 532 (888)
Q Consensus 455 ~--~~~~~~i~~~~d~~Ld~lr~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~gy~i~v~~~~~~~~~~~~~~~ 532 (888)
. .+.+.+|++
T Consensus 152 ~~~~~~~~~I~~-------------------------------------------------------------------- 163 (204)
T PF05192_consen 152 SLAIREQDIIRD-------------------------------------------------------------------- 163 (204)
T ss_dssp CCHCTTSSSBST--------------------------------------------------------------------
T ss_pred HHHHhcccHHHH--------------------------------------------------------------------
Confidence 1 111112222
Q ss_pred EEEEEEecceEEEEChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhH
Q 002722 533 FIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFAD 604 (888)
Q Consensus 533 ~~~~~~~~~~~~~~t~~l~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~l~~~~~~ia~lD~l~s~A~ 604 (888)
+...+..++.+|...+.++.+.|..+.++||+|||++|||+
T Consensus 164 -------------------------------~~~~~~~i~~~L~~~i~~~~~~l~~~~~~i~eLD~l~s~A~ 204 (204)
T PF05192_consen 164 -------------------------------INDEEQRILRELTNEIRKYSPELRELSEAIAELDVLISFAK 204 (204)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 66678889999999999999999999999999999999985
|
; InterPro: IPR007696 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the core domain (domain 3) found in proteins of the MutS family. The core domain of MutS adopts a multi-helical structure comprised of two subdomains, which are interrupted by the clamp domain. Two of the helices in the core domain comprise the levers that extend towards the DNA. This domain is found associated with Pfam:PF00488, Pfam:PF05188, Pfam:PF01624 and Pfam:PF05190. The aligned region corresponds with domain III, which is central to the structure of Thermus aquaticus MutS as characterised in [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2O8F_A 3THW_A 3THX_A 2O8C_A 3THY_A 2O8E_A 2O8B_A 3THZ_A 2O8D_A 1FW6_A .... |
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-21 Score=192.69 Aligned_cols=136 Identities=40% Similarity=0.548 Sum_probs=115.1
Q ss_pred EEcCcCceeeeccCcccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhh----------cCccccccccccc
Q 002722 628 LEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ----------VGSFVPCDRASIS 697 (888)
Q Consensus 628 i~~~rhp~~~~~~~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~----------~g~~vp~~~~~~~ 697 (888)
+..++||.+ ++||++.+. ++++++|||||||||||++|+++.+..+++ .|+++|+....+
T Consensus 2 i~~~~~~~~-------~~~~~i~~~--~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~- 71 (162)
T cd03227 2 IVLGRFPSY-------FVPNDVTFG--EGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAEL- 71 (162)
T ss_pred ceeCCCCEE-------EeccEEecC--CCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEE-
Confidence 567899986 688999984 357999999999999999999999999998 999999888665
Q ss_pred HHHHHHHhcCCchhhhhccchhHHHHHHHHHHHHhCC--CCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEE
Q 002722 698 VRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGAT--DRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFA 775 (888)
Q Consensus 698 ~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~~--~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~ 775 (888)
++++++ .|..+.++..++.++..++ +|+++|+|||++|||+.++..++..+.+++.+ ++++|++
T Consensus 72 ----i~~~~~--------lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~--~~~vii~ 137 (162)
T cd03227 72 ----IFTRLQ--------LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK--GAQVIVI 137 (162)
T ss_pred ----ehheee--------ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc--CCEEEEE
Confidence 455544 5666777778888887655 89999999999999999999998888877654 8999999
Q ss_pred ecChhHHHHhhh
Q 002722 776 THFHELTALAHE 787 (888)
Q Consensus 776 TH~~~l~~~~~~ 787 (888)
||++++...+++
T Consensus 138 TH~~~~~~~~d~ 149 (162)
T cd03227 138 THLPELAELADK 149 (162)
T ss_pred cCCHHHHHhhhh
Confidence 999999887766
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.7e-21 Score=198.32 Aligned_cols=158 Identities=17% Similarity=0.175 Sum_probs=126.7
Q ss_pred cccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHh--------------------hhhcCcccccccc---c---
Q 002722 642 VNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL--------------------MAQVGSFVPCDRA---S--- 695 (888)
Q Consensus 642 ~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~--------------------~a~~g~~vp~~~~---~--- 695 (888)
+++|.++++|++.+|++++|+||||||||||||+++++.. +|+.-.|||+... .
T Consensus 14 ~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV 93 (258)
T COG1120 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTV 93 (258)
T ss_pred CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEE
Confidence 4577889999999999999999999999999999987532 3444457776531 0
Q ss_pred ----------------------ccHHHHHHHhcCCchhhhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhh
Q 002722 696 ----------------------ISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYD 752 (888)
Q Consensus 696 ----------------------~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~slvllDEp~~gtd~~~ 752 (888)
...++..+..+|..+...+...++|++.+|.+.|.++ |.+++++||||||+.||...
T Consensus 94 ~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~ 173 (258)
T COG1120 94 YELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAH 173 (258)
T ss_pred eehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHH
Confidence 1123445778888888888899999888887776665 88999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEEEEE
Q 002722 753 GFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSAHI 809 (888)
Q Consensus 753 ~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~~~~ 809 (888)
...+ ..++..+.++.|.++|+++||++++ .+||+ +..++++.+.+..
T Consensus 174 Q~ev-l~ll~~l~~~~~~tvv~vlHDlN~A~ryad~---------~i~lk~G~i~a~G 221 (258)
T COG1120 174 QIEV-LELLRDLNREKGLTVVMVLHDLNLAARYADH---------LILLKDGKIVAQG 221 (258)
T ss_pred HHHH-HHHHHHHHHhcCCEEEEEecCHHHHHHhCCE---------EEEEECCeEEeec
Confidence 9999 7788888866799999999999887 57877 6667777776653
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=9e-21 Score=196.26 Aligned_cols=142 Identities=21% Similarity=0.240 Sum_probs=114.9
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh-----------------hcCcccccccc------------
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA-----------------QVGSFVPCDRA------------ 694 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a-----------------~~g~~vp~~~~------------ 694 (888)
.+..+++|++.+|++++|+||||||||||+|++.++..+. +.-.|||+...
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~ 97 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDV 97 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHH
Confidence 3566999999999999999999999999999998854321 12247886431
Q ss_pred -------cc-----------cHHHHHHHhcCCchhhhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHH
Q 002722 695 -------SI-----------SVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDGFG 755 (888)
Q Consensus 695 -------~~-----------~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~slvllDEp~~gtd~~~~~~ 755 (888)
.. ..++..+.++|..+...+..+.+|++++|.+.++++ +++|+|+|||||+.|.|+.....
T Consensus 98 V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~ 177 (254)
T COG1121 98 VLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKE 177 (254)
T ss_pred HHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHH
Confidence 01 234567888999999999999999888877766665 89999999999999999988888
Q ss_pred HHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 756 LAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 756 i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
+ +.++..+.++ |+++|++|||+... +++|+
T Consensus 178 i-~~lL~~l~~e-g~tIl~vtHDL~~v~~~~D~ 208 (254)
T COG1121 178 I-YDLLKELRQE-GKTVLMVTHDLGLVMAYFDR 208 (254)
T ss_pred H-HHHHHHHHHC-CCEEEEEeCCcHHhHhhCCE
Confidence 7 8999999985 99999999997654 57776
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.5e-20 Score=200.39 Aligned_cols=156 Identities=20% Similarity=0.233 Sum_probs=120.6
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh--------------------hhcCccccccccc-------
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRAS------- 695 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~--------------------a~~g~~vp~~~~~------- 695 (888)
..+.++++|++.+|++++|+|||||||||+||++++++.. .++| |+|....-
T Consensus 18 ~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~ig-y~~~~~~~~~~lT~~ 96 (293)
T COG1131 18 KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIG-YVPQEPSLYPELTVR 96 (293)
T ss_pred CEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheE-EEccCCCCCccccHH
Confidence 5788899999999999999999999999999999876532 1233 44433210
Q ss_pred -----------------ccHHHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHH
Q 002722 696 -----------------ISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLA 757 (888)
Q Consensus 696 -----------------~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~ 757 (888)
...++.++..+|+.+......++||.+|++...++. .+.+|+|+||||||+|+||.....+
T Consensus 97 e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~- 175 (293)
T COG1131 97 ENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREI- 175 (293)
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHH-
Confidence 113446777888877555667899999888766555 4789999999999999999988888
Q ss_pred HHHHHHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEEEEE
Q 002722 758 WAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSAHI 809 (888)
Q Consensus 758 ~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~~~~ 809 (888)
+.++..++++.|.++|++||.++.+ .+||+ +--+.++++.+..
T Consensus 176 ~~~l~~l~~~g~~tvlissH~l~e~~~~~d~---------v~il~~G~~~~~g 219 (293)
T COG1131 176 WELLRELAKEGGVTILLSTHILEEAEELCDR---------VIILNDGKIIAEG 219 (293)
T ss_pred HHHHHHHHhCCCcEEEEeCCcHHHHHHhCCE---------EEEEeCCEEEEeC
Confidence 8888888874348999999998665 46887 6677888887754
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5e-20 Score=184.52 Aligned_cols=144 Identities=19% Similarity=0.192 Sum_probs=112.0
Q ss_pred CcccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh-----------------hhcCcccccccc---cccHH-
Q 002722 641 WVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-----------------AQVGSFVPCDRA---SISVR- 699 (888)
Q Consensus 641 ~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~-----------------a~~g~~vp~~~~---~~~~~- 699 (888)
+..-+.++++|.+.+|++.+++|||||||||.+|+|.++.-. ..+| |.|-+.. .+.+.
T Consensus 13 g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIG-yLPEERGLy~k~tv~d 91 (300)
T COG4152 13 GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIG-YLPEERGLYPKMTVED 91 (300)
T ss_pred CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcc-cChhhhccCccCcHHH
Confidence 345678999999999999999999999999999999876422 2233 6776652 23333
Q ss_pred --------------------HHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHH
Q 002722 700 --------------------DCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAW 758 (888)
Q Consensus 700 --------------------d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~ 758 (888)
+.++.|++..........++|.+++|....+. .+.+|.|+|||||++||||.+...+-.
T Consensus 92 ql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~ 171 (300)
T COG4152 92 QLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKD 171 (300)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHH
Confidence 34677777777777777888888877655544 478999999999999999999999855
Q ss_pred HHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 759 AICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 759 ~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
++. .+.+ .|+++||+||.++-+ ++||+
T Consensus 172 ~I~-~lk~-~GatIifSsH~Me~vEeLCD~ 199 (300)
T COG4152 172 AIF-ELKE-EGATIIFSSHRMEHVEELCDR 199 (300)
T ss_pred HHH-HHHh-cCCEEEEecchHHHHHHHhhh
Confidence 554 4565 699999999998766 58887
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.1e-20 Score=181.28 Aligned_cols=144 Identities=19% Similarity=0.142 Sum_probs=115.0
Q ss_pred CcccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh----------------------hhcCcccccccc---c
Q 002722 641 WVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----------------------AQVGSFVPCDRA---S 695 (888)
Q Consensus 641 ~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~----------------------a~~g~~vp~~~~---~ 695 (888)
|..-|.+++++++.+|++++|+||+|||||||||++.++... .++| +|.+... .
T Consensus 13 g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vG-mVFQ~fnLFPH 91 (240)
T COG1126 13 GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVG-MVFQQFNLFPH 91 (240)
T ss_pred CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcC-eeccccccccc
Confidence 445788999999999999999999999999999998654321 1223 2222211 1
Q ss_pred ccH----------------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhh
Q 002722 696 ISV----------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYD 752 (888)
Q Consensus 696 ~~~----------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~slvllDEp~~gtd~~~ 752 (888)
+++ .-.++.++|+.|......+.+|++.+|...|.++ |.+|.++|+||||+.|||.-
T Consensus 92 lTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPEl 171 (240)
T COG1126 92 LTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPEL 171 (240)
T ss_pred chHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHH
Confidence 111 2257899999999999999999998887776665 88999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEecChhHHH-Hhhh
Q 002722 753 GFGLAWAICEHLVEEIRAPTLFATHFHELTA-LAHE 787 (888)
Q Consensus 753 ~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~-~~~~ 787 (888)
...+ ..++..|++ .|.|.+++||.+.++. .+|+
T Consensus 172 v~EV-L~vm~~LA~-eGmTMivVTHEM~FAr~Vadr 205 (240)
T COG1126 172 VGEV-LDVMKDLAE-EGMTMIIVTHEMGFAREVADR 205 (240)
T ss_pred HHHH-HHHHHHHHH-cCCeEEEEechhHHHHHhhhe
Confidence 8888 778889998 6999999999999985 6666
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.6e-20 Score=183.12 Aligned_cols=158 Identities=20% Similarity=0.153 Sum_probs=119.5
Q ss_pred CcccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh------------------------hhcCcccccccc--
Q 002722 641 WVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM------------------------AQVGSFVPCDRA-- 694 (888)
Q Consensus 641 ~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~------------------------a~~g~~vp~~~~-- 694 (888)
+.+.|.++++|++.+|++++|+||+|+||||+||+|+++... .++|. +.+..|
T Consensus 19 G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~Gv-lFQ~gALF 97 (263)
T COG1127 19 GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGV-LFQQGALF 97 (263)
T ss_pred CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeE-Eeeccccc
Confidence 567889999999999999999999999999999999765321 11221 111111
Q ss_pred -cccHHHH----------------------HHHhcCCchh-hhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCC
Q 002722 695 -SISVRDC----------------------IFARVGAGDC-QLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTS 749 (888)
Q Consensus 695 -~~~~~d~----------------------i~~~~~~~d~-~~~~~s~f~~e~~~~~~il~~-~~~~slvllDEp~~gtd 749 (888)
.++++++ -+..+|+... ...-.|.+|++|++.+.+.++ +.+|+|+++||||+|+|
T Consensus 98 ssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLD 177 (263)
T COG1127 98 SSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLD 177 (263)
T ss_pred cccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCC
Confidence 1222221 1345677666 667789999999988777665 78999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCCeEEEEecChh-HHHHhhhccccccccccccEeEEEEEEEE
Q 002722 750 TYDGFGLAWAICEHLVEEIRAPTLFATHFHE-LTALAHENANEFNTKQMVGVANYHVSAHI 809 (888)
Q Consensus 750 ~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~-l~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 809 (888)
|.....+ ..++..+.+..|.|++++|||.+ +..++|+ ..-+.++++.+..
T Consensus 178 PI~a~~~-~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Dr---------v~~L~~gkv~~~G 228 (263)
T COG1127 178 PISAGVI-DELIRELNDALGLTVIMVTHDLDSLLTIADR---------VAVLADGKVIAEG 228 (263)
T ss_pred cchHHHH-HHHHHHHHHhhCCEEEEEECChHHHHhhhce---------EEEEeCCEEEEeC
Confidence 9888877 77888888778999999999954 5578888 6777888877653
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.5e-20 Score=177.66 Aligned_cols=151 Identities=17% Similarity=0.209 Sum_probs=113.5
Q ss_pred cCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhcCccc-------------------cccc---cccc------
Q 002722 646 PNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFV-------------------PCDR---ASIS------ 697 (888)
Q Consensus 646 ~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~g~~v-------------------p~~~---~~~~------ 697 (888)
..|++|+...|++++|.|||||||||+||+++.+..+.+.-.++ +.+. ++++
T Consensus 18 vrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~ 97 (245)
T COG4555 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLK 97 (245)
T ss_pred hhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHH
Confidence 56899999999999999999999999999999877654421111 1000 0111
Q ss_pred H---------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHH
Q 002722 698 V---------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDGFGLAWAIC 761 (888)
Q Consensus 698 ~---------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~slvllDEp~~gtd~~~~~~i~~~il 761 (888)
. .+.+..+++..+.+.+....||.+|++...|.++ ..+|++++||||++|+|......+ ..++
T Consensus 98 ~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~-~dfi 176 (245)
T COG4555 98 YFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKF-HDFI 176 (245)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHH-HHHH
Confidence 1 1234456677777788888899999888777765 689999999999999999888777 7777
Q ss_pred HHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEEE
Q 002722 762 EHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSA 807 (888)
Q Consensus 762 ~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (888)
.++.+ .|..+||+||.++.. ++||+ +.-+.++++.+
T Consensus 177 ~q~k~-egr~viFSSH~m~EvealCDr---------vivlh~Gevv~ 213 (245)
T COG4555 177 KQLKN-EGRAVIFSSHIMQEVEALCDR---------VIVLHKGEVVL 213 (245)
T ss_pred HHhhc-CCcEEEEecccHHHHHHhhhe---------EEEEecCcEEE
Confidence 88876 699999999997655 59998 55566655544
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-19 Score=185.78 Aligned_cols=142 Identities=20% Similarity=0.215 Sum_probs=111.5
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh-------------------------hhcCccccccc-----
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-------------------------AQVGSFVPCDR----- 693 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~-------------------------a~~g~~vp~~~----- 693 (888)
.+.++++|++.+|++++|+||+||||||||++++++.-+ .++| ||.+..
T Consensus 19 ~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iG-fvFQ~~nLl~~ 97 (226)
T COG1136 19 EALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIG-FVFQNFNLLPD 97 (226)
T ss_pred EecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEE-EECccCCCCCC
Confidence 578899999999999999999999999999999865321 1233 222111
Q ss_pred --c-----------c------ccHHHHHHHhcCCchhhh-hccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhh
Q 002722 694 --A-----------S------ISVRDCIFARVGAGDCQL-RGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYD 752 (888)
Q Consensus 694 --~-----------~------~~~~d~i~~~~~~~d~~~-~~~s~f~~e~~~~~~il~~-~~~~slvllDEp~~gtd~~~ 752 (888)
+ . ......++.++|..+... ...+.+|++.+|..+|+++ +.+|+++|.||||..+|+..
T Consensus 98 ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t 177 (226)
T COG1136 98 LTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKT 177 (226)
T ss_pred CCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHH
Confidence 0 0 111234566778887777 6688899887777666664 78999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 753 GFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 753 ~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
+..+ ..++..+.++.|.++|++|||.+++..+++
T Consensus 178 ~~~V-~~ll~~~~~~~g~tii~VTHd~~lA~~~dr 211 (226)
T COG1136 178 AKEV-LELLRELNKERGKTIIMVTHDPELAKYADR 211 (226)
T ss_pred HHHH-HHHHHHHHHhcCCEEEEEcCCHHHHHhCCE
Confidence 9999 777778876579999999999999999998
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.9e-20 Score=185.89 Aligned_cols=144 Identities=24% Similarity=0.205 Sum_probs=112.9
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhc-----C----------cccccccccc-----------
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQV-----G----------SFVPCDRASI----------- 696 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~-----g----------~~vp~~~~~~----------- 696 (888)
..+..+++|++.+|+++.|+||+|||||||||.||++.-.... | .||+++.+-+
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l 95 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVAL 95 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhhee
Confidence 3567799999999999999999999999999999987533211 1 1333332211
Q ss_pred -------------cHHHHHHHhcCCchhhhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHH
Q 002722 697 -------------SVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDGFGLAWAICE 762 (888)
Q Consensus 697 -------------~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~slvllDEp~~gtd~~~~~~i~~~il~ 762 (888)
..++.++..+|+.+........+|++|+|...|+++ +.+|.++|||||++.||...+..+-..++
T Consensus 96 ~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~- 174 (248)
T COG1116 96 GLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELL- 174 (248)
T ss_pred hhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHH-
Confidence 134567788899888888999999999998877775 78999999999999999999999954444
Q ss_pred HHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 763 HLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 763 ~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
.+.++.+.|++++|||.+.+ .++|+
T Consensus 175 ~lw~~~~~TvllVTHdi~EAv~LsdR 200 (248)
T COG1116 175 RLWEETRKTVLLVTHDVDEAVYLADR 200 (248)
T ss_pred HHHHhhCCEEEEEeCCHHHHHhhhCE
Confidence 45554799999999997665 57776
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.4e-19 Score=177.27 Aligned_cols=142 Identities=16% Similarity=0.158 Sum_probs=107.1
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhcCccc----ccc-------cccccHHHHHHHhcCCchhh
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFV----PCD-------RASISVRDCIFARVGAGDCQ 712 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~g~~v----p~~-------~~~~~~~d~i~~~~~~~d~~ 712 (888)
.+.++++|++.+|++++|+||||||||||+|+++++... .-|... +.. ...++++..++..+|..+.+
T Consensus 13 ~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~-~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~ 91 (180)
T cd03214 13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKP-SSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLA 91 (180)
T ss_pred eeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHh
Confidence 467789999999999999999999999999999886432 223211 000 01244444567888888777
Q ss_pred hhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 713 LRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 713 ~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
......+|+++++...+.+ .+.+|+++|||||++|+|+.....+ ..+++.+.++.++++|++||+++.. +++++
T Consensus 92 ~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~-~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~ 167 (180)
T cd03214 92 DRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIEL-LELLRRLARERGKTVVMVLHDLNLAARYADR 167 (180)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 7777888877776655554 5889999999999999999888888 5666666652378999999998775 67776
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-18 Score=175.21 Aligned_cols=159 Identities=20% Similarity=0.204 Sum_probs=125.7
Q ss_pred CcccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHH------------------------hhhhcCcc------cc
Q 002722 641 WVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI------------------------LMAQVGSF------VP 690 (888)
Q Consensus 641 ~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~------------------------~~a~~g~~------vp 690 (888)
+++...++++|++.+|++++|+||+|||||||||++.+++ ..+++|+. ||
T Consensus 15 ~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~ 94 (258)
T COG3638 15 GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVP 94 (258)
T ss_pred CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCccc
Confidence 3456778999999999999999999999999999987542 23445532 22
Q ss_pred cccc----------cccHH----------H-----HHHHhcCCchhhhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCC
Q 002722 691 CDRA----------SISVR----------D-----CIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDEL 744 (888)
Q Consensus 691 ~~~~----------~~~~~----------d-----~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~slvllDEp 744 (888)
..+. ..+.+ | ..++|+|..+......+++|++.+|...|.+. +.+|.++|-|||
T Consensus 95 r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEP 174 (258)
T COG3638 95 RLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEP 174 (258)
T ss_pred ccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCc
Confidence 2110 00111 1 24788999999999999999988887777665 789999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEEEEE
Q 002722 745 GRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSAHI 809 (888)
Q Consensus 745 ~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~~~~ 809 (888)
.++|||.....+ +.+++.+.++.|.|+|+.-|+.+++ ++|++ ..+++.+++.++.
T Consensus 175 vasLDp~~a~~V-m~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~R---------iigl~~G~ivfDg 230 (258)
T COG3638 175 VASLDPESAKKV-MDILKDINQEDGITVIVNLHQVDLAKKYADR---------IIGLKAGRIVFDG 230 (258)
T ss_pred ccccChhhHHHH-HHHHHHHHHHcCCEEEEEechHHHHHHHHhh---------heEecCCcEEEeC
Confidence 999999999998 7777888877899999999999998 58988 8888888877754
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6e-19 Score=171.88 Aligned_cols=158 Identities=18% Similarity=0.172 Sum_probs=117.0
Q ss_pred CcccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHH--------------------hhhhcC-cccccccc---cc
Q 002722 641 WVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI--------------------LMAQVG-SFVPCDRA---SI 696 (888)
Q Consensus 641 ~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~--------------------~~a~~g-~~vp~~~~---~~ 696 (888)
++..|-|+++|++.+|+++++.|||||||||.+-++.+++ ..|++| .|+|++.. .+
T Consensus 15 ~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~L 94 (243)
T COG1137 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKL 94 (243)
T ss_pred CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcC
Confidence 4567889999999999999999999999999999987654 235555 47887762 34
Q ss_pred cHHHHHH-----------------------HhcCCchhhhhccchhHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhh
Q 002722 697 SVRDCIF-----------------------ARVGAGDCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYD 752 (888)
Q Consensus 697 ~~~d~i~-----------------------~~~~~~d~~~~~~s~f~~e~~~~~~il-~~~~~~slvllDEp~~gtd~~~ 752 (888)
++-|.|. ..++...-......++|++.++...|. ..+.+|+++|||||++|.||..
T Consensus 95 tV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPia 174 (243)
T COG1137 95 TVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIA 174 (243)
T ss_pred cHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchh
Confidence 4444433 333333333334456665555544444 4578999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEecC-hhHHHHhhhccccccccccccEeEEEEEEEE
Q 002722 753 GFGLAWAICEHLVEEIRAPTLFATHF-HELTALAHENANEFNTKQMVGVANYHVSAHI 809 (888)
Q Consensus 753 ~~~i~~~il~~l~~~~~~~~l~~TH~-~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 809 (888)
...| ..++.+|.+ .|..++++-|+ .|...++|+ .--+..+++.++.
T Consensus 175 V~dI-q~iI~~L~~-rgiGvLITDHNVREtL~i~dR---------aYIi~~G~vla~G 221 (243)
T COG1137 175 VIDI-QRIIKHLKD-RGIGVLITDHNVRETLDICDR---------AYIISDGKVLAEG 221 (243)
T ss_pred HHHH-HHHHHHHHh-CCceEEEccccHHHHHhhhhe---------EEEEecCeEEecC
Confidence 9999 889999998 79999999999 567788888 4456666665543
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-18 Score=189.45 Aligned_cols=154 Identities=18% Similarity=0.202 Sum_probs=115.0
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh--------------------hhcCcccccccc---cccHH
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRA---SISVR 699 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~--------------------a~~g~~vp~~~~---~~~~~ 699 (888)
..+.++++|++.+|++++|+||||||||||+|+++++... .++| |+|.+.. .+++.
T Consensus 20 ~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig-~v~q~~~~~~~~tv~ 98 (306)
T PRK13537 20 KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVG-VVPQFDNLDPDFTVR 98 (306)
T ss_pred eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEE-EEeccCcCCCCCcHH
Confidence 4578899999999999999999999999999999875321 1222 4554431 11221
Q ss_pred ---------------------HHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHH
Q 002722 700 ---------------------DCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLA 757 (888)
Q Consensus 700 ---------------------d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~ 757 (888)
+.++.+++..+......+.+|++|++...+.+ .+.+|+++|||||++|+||.....+
T Consensus 99 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l- 177 (306)
T PRK13537 99 ENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLM- 177 (306)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHH-
Confidence 13344556655556667788888877765555 4789999999999999999988888
Q ss_pred HHHHHHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEEEE
Q 002722 758 WAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSAH 808 (888)
Q Consensus 758 ~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~~~ 808 (888)
+.++..+.+ .|.++|++||+++.+ ++|++ +..+.++++.+.
T Consensus 178 ~~~l~~l~~-~g~till~sH~l~e~~~~~d~---------i~il~~G~i~~~ 219 (306)
T PRK13537 178 WERLRSLLA-RGKTILLTTHFMEEAERLCDR---------LCVIEEGRKIAE 219 (306)
T ss_pred HHHHHHHHh-CCCEEEEECCCHHHHHHhCCE---------EEEEECCEEEEE
Confidence 777777776 589999999998765 67887 666777777654
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-18 Score=191.55 Aligned_cols=157 Identities=20% Similarity=0.149 Sum_probs=117.1
Q ss_pred cccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh-------------------hcCcccccccc---cccHH
Q 002722 642 VNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA-------------------QVGSFVPCDRA---SISVR 699 (888)
Q Consensus 642 ~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a-------------------~~g~~vp~~~~---~~~~~ 699 (888)
+..+.++++|++.+|++++|+||||||||||||+++++.... +.-.|+|.... .+++.
T Consensus 53 ~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~ 132 (340)
T PRK13536 53 DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVR 132 (340)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHH
Confidence 346888999999999999999999999999999998754211 11124443321 11111
Q ss_pred ---------------------HHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHH
Q 002722 700 ---------------------DCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLA 757 (888)
Q Consensus 700 ---------------------d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~ 757 (888)
+.++.+++..+.......++|++|++...+++ .+.+|+++|||||++|+||.....+
T Consensus 133 e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l- 211 (340)
T PRK13536 133 ENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLI- 211 (340)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHH-
Confidence 23455566666666667789988888766665 4789999999999999999988888
Q ss_pred HHHHHHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEEEEE
Q 002722 758 WAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSAHI 809 (888)
Q Consensus 758 ~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~~~~ 809 (888)
+.++..+.+ .|.++|++||+++.. ++|++ +..+.++++.+..
T Consensus 212 ~~~l~~l~~-~g~tilisSH~l~e~~~~~d~---------i~il~~G~i~~~g 254 (340)
T PRK13536 212 WERLRSLLA-RGKTILLTTHFMEEAERLCDR---------LCVLEAGRKIAEG 254 (340)
T ss_pred HHHHHHHHh-CCCEEEEECCCHHHHHHhCCE---------EEEEECCEEEEEc
Confidence 777777776 589999999998765 68888 6667777776543
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-18 Score=189.18 Aligned_cols=153 Identities=18% Similarity=0.219 Sum_probs=114.4
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh--------------------hhcCcccccccc---cccH--
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRA---SISV-- 698 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~--------------------a~~g~~vp~~~~---~~~~-- 698 (888)
.+.++++|++.+|++++|+||||||||||||+++++... .++ .|+|+... .+++
T Consensus 7 ~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i-~~~~q~~~~~~~~tv~e 85 (302)
T TIGR01188 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSI-GIVPQYASVDEDLTGRE 85 (302)
T ss_pred eEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhc-EEecCCCCCCCCCcHHH
Confidence 467799999999999999999999999999999875321 112 24444321 1111
Q ss_pred -------------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHH
Q 002722 699 -------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAW 758 (888)
Q Consensus 699 -------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~ 758 (888)
++.++.++|..+......+++|++|++...+++ .+.+|+++||||||+|+||.....+ +
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l-~ 164 (302)
T TIGR01188 86 NLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAI-W 164 (302)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH-H
Confidence 233556677766666777889988877766554 4789999999999999999888888 6
Q ss_pred HHHHHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEEEE
Q 002722 759 AICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSAH 808 (888)
Q Consensus 759 ~il~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~~~ 808 (888)
.+++.+.+ .|.++|++||+++.. ++|++ +..+.++++...
T Consensus 165 ~~l~~~~~-~g~tvi~~sH~~~~~~~~~d~---------v~~l~~G~i~~~ 205 (302)
T TIGR01188 165 DYIRALKE-EGVTILLTTHYMEEADKLCDR---------IAIIDHGRIIAE 205 (302)
T ss_pred HHHHHHHh-CCCEEEEECCCHHHHHHhCCE---------EEEEECCEEEEE
Confidence 67777776 589999999998765 57887 666777776543
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.8e-18 Score=179.70 Aligned_cols=143 Identities=19% Similarity=0.140 Sum_probs=103.8
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh---------------hcCcccccccc---cccH-------
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA---------------QVGSFVPCDRA---SISV------- 698 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a---------------~~g~~vp~~~~---~~~~------- 698 (888)
.+.++++|++.+|++++|+||||||||||+|+++++.... +.-.|+|+... ..++
T Consensus 18 ~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 97 (220)
T cd03293 18 TALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALG 97 (220)
T ss_pred EEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHHH
Confidence 5677999999999999999999999999999998764211 11124443321 1111
Q ss_pred --------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHH
Q 002722 699 --------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEH 763 (888)
Q Consensus 699 --------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~il~~ 763 (888)
+..++.++|..+.+....+.+|+++++...+++ .+.+|+++|||||++|+|+.....+ +.++..
T Consensus 98 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~-~~~l~~ 176 (220)
T cd03293 98 LELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQL-QEELLD 176 (220)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHH-HHHHHH
Confidence 123455666666666667788887777655555 4789999999999999999988888 666666
Q ss_pred HHhcCCCeEEEEecChhH-HHHhhh
Q 002722 764 LVEEIRAPTLFATHFHEL-TALAHE 787 (888)
Q Consensus 764 l~~~~~~~~l~~TH~~~l-~~~~~~ 787 (888)
+.++.|.++|++||+.+. ..++++
T Consensus 177 ~~~~~~~tiii~sH~~~~~~~~~d~ 201 (220)
T cd03293 177 IWRETGKTVLLVTHDIDEAVFLADR 201 (220)
T ss_pred HHHHcCCEEEEEecCHHHHHHhCCE
Confidence 654358899999999875 467776
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-18 Score=180.80 Aligned_cols=143 Identities=23% Similarity=0.207 Sum_probs=103.3
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh------------------------hhcCcccccccc---cc
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM------------------------AQVGSFVPCDRA---SI 696 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~------------------------a~~g~~vp~~~~---~~ 696 (888)
.+.++++|++.+|++++|+||||||||||||+++++... .+.-.|+|.... ..
T Consensus 18 ~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (218)
T cd03255 18 QALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDL 97 (218)
T ss_pred eEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCC
Confidence 466799999999999999999999999999999865311 011123333211 01
Q ss_pred c---------------------HHHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHH
Q 002722 697 S---------------------VRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGF 754 (888)
Q Consensus 697 ~---------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~ 754 (888)
+ .++.++..+|..+........+|+++++...+++ .+.+|+++|||||++|+|+....
T Consensus 98 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~ 177 (218)
T cd03255 98 TALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGK 177 (218)
T ss_pred cHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHH
Confidence 1 1223556667666666666788877777655554 47899999999999999998888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 755 GLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
.+ ..++..+.++.|.++|++||+.+...++++
T Consensus 178 ~l-~~~l~~~~~~~~~tii~~sH~~~~~~~~d~ 209 (218)
T cd03255 178 EV-MELLRELNKEAGTTIVVVTHDPELAEYADR 209 (218)
T ss_pred HH-HHHHHHHHHhcCCeEEEEECCHHHHhhhcE
Confidence 87 666666654248999999999887766665
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-18 Score=172.96 Aligned_cols=143 Identities=18% Similarity=0.152 Sum_probs=100.2
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhcCcccccccc-cccHH--HHHHHhcCCch-hhhhccch
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRA-SISVR--DCIFARVGAGD-CQLRGVST 718 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~g~~vp~~~~-~~~~~--d~i~~~~~~~d-~~~~~~s~ 718 (888)
..+.++++|++.+|++++|+||||||||||||++..-.--..++...+.... .+.++ ...+.+++..+ .+....+.
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~ 87 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLST 87 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCc
Confidence 3566799999999999999999999999999987420000001111111100 01111 34677788765 36667788
Q ss_pred hHHHHHHHHHHHH-hCCC--CcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 719 FMQEMLETASILK-GATD--RSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 719 f~~e~~~~~~il~-~~~~--~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
+|+++++...+.+ .+.+ |+++|||||++|+|+.....+ ...+..+.+ .|.++|++||+++....+++
T Consensus 88 LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l-~~~l~~~~~-~g~tvIivSH~~~~~~~~d~ 157 (176)
T cd03238 88 LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQL-LEVIKGLID-LGNTVILIEHNLDVLSSADW 157 (176)
T ss_pred CCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHH-HHHHHHHHh-CCCEEEEEeCCHHHHHhCCE
Confidence 8887777655555 4677 999999999999999988888 555566665 58999999999987766655
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.3e-18 Score=178.23 Aligned_cols=143 Identities=22% Similarity=0.162 Sum_probs=103.4
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh------------------hcCcccccccc---cccH----
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA------------------QVGSFVPCDRA---SISV---- 698 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a------------------~~g~~vp~~~~---~~~~---- 698 (888)
.+.++++|++.+|++++|+||||||||||+|+++++.... +.-.|+|+... ..++
T Consensus 14 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l 93 (213)
T cd03259 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENI 93 (213)
T ss_pred eeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHH
Confidence 4678999999999999999999999999999998754211 01124444321 1111
Q ss_pred -----------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHH
Q 002722 699 -----------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAI 760 (888)
Q Consensus 699 -----------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~i 760 (888)
+..++.++|..+......+.+|+++++...+++ .+.+|+++|||||++|+|+.....+ +.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l-~~~ 172 (213)
T cd03259 94 AFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREEL-REE 172 (213)
T ss_pred HhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH-HHH
Confidence 123455566665556666778877777666555 4789999999999999999888888 566
Q ss_pred HHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 761 CEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 761 l~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
+..+.++.|.++|++||+.+.. +++++
T Consensus 173 l~~~~~~~~~tii~~sH~~~~~~~~~d~ 200 (213)
T cd03259 173 LKELQRELGITTIYVTHDQEEALALADR 200 (213)
T ss_pred HHHHHHHcCCEEEEEecCHHHHHHhcCE
Confidence 6666553489999999998754 57776
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.2e-18 Score=172.84 Aligned_cols=154 Identities=19% Similarity=0.216 Sum_probs=115.0
Q ss_pred cccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHh----------------------------hhhcCccccccc
Q 002722 642 VNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL----------------------------MAQVGSFVPCDR 693 (888)
Q Consensus 642 ~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~----------------------------~a~~g~~vp~~~ 693 (888)
+..+.++++|++.+|++++++||+||||||+||+|..++- .-|+|.| |.-.
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLF-Ph~T 91 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLF-PHLT 91 (309)
T ss_pred CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccC-CCcc
Confidence 3467789999999999999999999999999999864421 1234433 2211
Q ss_pred c-----c------------ccHHHHHHHhcCCc--hhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhH
Q 002722 694 A-----S------------ISVRDCIFARVGAG--DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDG 753 (888)
Q Consensus 694 ~-----~------------~~~~d~i~~~~~~~--d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~ 753 (888)
. . -.-++.++..+|+. +...+..+.+|++.+|..-+++ .|.+|.++|||||++.+||..+
T Consensus 92 v~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R 171 (309)
T COG1125 92 VAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITR 171 (309)
T ss_pred HHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhH
Confidence 0 0 11245577778875 4566778888887777655555 4789999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEE
Q 002722 754 FGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
..+ ..-+..+.++.|.|++|+|||++.+ .++++ +..+..+++.
T Consensus 172 ~~l-Q~e~~~lq~~l~kTivfVTHDidEA~kLadr---------i~vm~~G~i~ 215 (309)
T COG1125 172 KQL-QEEIKELQKELGKTIVFVTHDIDEALKLADR---------IAVMDAGEIV 215 (309)
T ss_pred HHH-HHHHHHHHHHhCCEEEEEecCHHHHHhhhce---------EEEecCCeEE
Confidence 999 6666677777899999999998766 68888 5555555553
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.5e-18 Score=176.91 Aligned_cols=142 Identities=18% Similarity=0.109 Sum_probs=104.3
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh-----------------hcCcccccccc----cccH----
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA-----------------QVGSFVPCDRA----SISV---- 698 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a-----------------~~g~~vp~~~~----~~~~---- 698 (888)
.+.++++|++.+|++++|+||||||||||||+++++.... +.-.|+|+... ..++
T Consensus 14 ~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l 93 (205)
T cd03226 14 EILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREEL 93 (205)
T ss_pred ceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHH
Confidence 4677899999999999999999999999999998753210 11124444421 1111
Q ss_pred -------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHH
Q 002722 699 -------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHL 764 (888)
Q Consensus 699 -------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l 764 (888)
+..++.++|..+........+|+++++...+++ .+.+|+++|||||++|+|+.....+ ..++..+
T Consensus 94 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l-~~~l~~~ 172 (205)
T cd03226 94 LLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERV-GELIREL 172 (205)
T ss_pred hhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHH-HHHHHHH
Confidence 234456667666666666788877777666555 4789999999999999999888888 6677777
Q ss_pred HhcCCCeEEEEecChhHH-HHhhh
Q 002722 765 VEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 765 ~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
.+ .|.++|++||+++.. .++++
T Consensus 173 ~~-~~~tii~~sH~~~~~~~~~d~ 195 (205)
T cd03226 173 AA-QGKAVIVITHDYEFLAKVCDR 195 (205)
T ss_pred HH-CCCEEEEEeCCHHHHHHhCCE
Confidence 65 589999999998765 46776
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.5e-18 Score=178.14 Aligned_cols=153 Identities=20% Similarity=0.189 Sum_probs=109.1
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh-------------------hcCccccccccc---ccH---
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA-------------------QVGSFVPCDRAS---ISV--- 698 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a-------------------~~g~~vp~~~~~---~~~--- 698 (888)
.+.++++|++.+|++++|+||||||||||+|+++++.... +.-.|+|+.... .++
T Consensus 14 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 93 (220)
T cd03265 14 EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWEN 93 (220)
T ss_pred EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHH
Confidence 4678999999999999999999999999999998753210 111244443210 111
Q ss_pred ------------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHH
Q 002722 699 ------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWA 759 (888)
Q Consensus 699 ------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~ 759 (888)
++.++.++|..+......+.+|+++++...+++ .+.+|+++|||||++|+|+.....+ ..
T Consensus 94 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l-~~ 172 (220)
T cd03265 94 LYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHV-WE 172 (220)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHH-HH
Confidence 223455667666666667788877776655554 5789999999999999999888888 56
Q ss_pred HHHHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEE
Q 002722 760 ICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 760 il~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
++..+.++.|.++|++||+.+.. .++++ ...+.++++.
T Consensus 173 ~l~~~~~~~~~tvi~~tH~~~~~~~~~d~---------i~~l~~G~i~ 211 (220)
T cd03265 173 YIEKLKEEFGMTILLTTHYMEEAEQLCDR---------VAIIDHGRII 211 (220)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCE---------EEEEeCCEEE
Confidence 66666653488999999998765 56776 5555555553
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.5e-18 Score=178.46 Aligned_cols=142 Identities=16% Similarity=0.087 Sum_probs=103.4
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh-----------------------hhcCcccccccc---ccc
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-----------------------AQVGSFVPCDRA---SIS 697 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~-----------------------a~~g~~vp~~~~---~~~ 697 (888)
.+.++++|++.+|++++|+||||||||||||+++++... .+.-.|+|+... ..+
T Consensus 17 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 96 (216)
T TIGR00960 17 PALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRT 96 (216)
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCcccccccc
Confidence 467799999999999999999999999999999875311 011124444321 111
Q ss_pred HH---------------------HHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHH
Q 002722 698 VR---------------------DCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFG 755 (888)
Q Consensus 698 ~~---------------------d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~ 755 (888)
+. ..++.++|..+........+|+++++...+.+ .+.+|+++|||||++|+|+.....
T Consensus 97 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 176 (216)
T TIGR00960 97 VYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRD 176 (216)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHH
Confidence 11 23455566666666666788877777655555 578999999999999999998888
Q ss_pred HHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 756 LAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 756 i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
+ ..++..+.+ .|.++|++||+.+.. .++++
T Consensus 177 l-~~~l~~~~~-~~~tii~vsH~~~~~~~~~d~ 207 (216)
T TIGR00960 177 I-MRLFEEFNR-RGTTVLVATHDINLVETYRHR 207 (216)
T ss_pred H-HHHHHHHHH-CCCEEEEEeCCHHHHHHhCCE
Confidence 8 556667765 589999999998766 46665
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.9e-18 Score=186.33 Aligned_cols=155 Identities=21% Similarity=0.197 Sum_probs=113.2
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh-------------------hcCcccccccc---cccHHH
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA-------------------QVGSFVPCDRA---SISVRD 700 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a-------------------~~g~~vp~~~~---~~~~~d 700 (888)
..+.++++|++.+|++++|+||||||||||||+++++.... +.-.|+|+... ..++.+
T Consensus 17 ~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 96 (303)
T TIGR01288 17 KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRE 96 (303)
T ss_pred eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHH
Confidence 35778999999999999999999999999999998754210 11124444321 112222
Q ss_pred ---------------------HHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHH
Q 002722 701 ---------------------CIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAW 758 (888)
Q Consensus 701 ---------------------~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~ 758 (888)
.++.+++..+......+.+|+++++...+++ .+.+|+++||||||+|+|+.....+ +
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l-~ 175 (303)
T TIGR01288 97 NLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLI-W 175 (303)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH-H
Confidence 2344556655556666788888877766555 4789999999999999999988888 6
Q ss_pred HHHHHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEEEE
Q 002722 759 AICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSAH 808 (888)
Q Consensus 759 ~il~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~~~ 808 (888)
.++..+.+ .|.++|++||+++.. +++++ +..+.++++...
T Consensus 176 ~~l~~~~~-~g~til~~sH~~~~~~~~~d~---------i~~l~~G~i~~~ 216 (303)
T TIGR01288 176 ERLRSLLA-RGKTILLTTHFMEEAERLCDR---------LCVLESGRKIAE 216 (303)
T ss_pred HHHHHHHh-CCCEEEEECCCHHHHHHhCCE---------EEEEECCEEEEE
Confidence 67777766 589999999998765 57887 666777776543
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.8e-18 Score=175.75 Aligned_cols=142 Identities=20% Similarity=0.142 Sum_probs=104.1
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh------------------hhcCcccccccc---cccH----
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM------------------AQVGSFVPCDRA---SISV---- 698 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~------------------a~~g~~vp~~~~---~~~~---- 698 (888)
.+.++++|++.+|++++|+||||||||||+|+++++... .+.-.|+|.... ..++
T Consensus 14 ~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l 93 (208)
T cd03268 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENL 93 (208)
T ss_pred EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHH
Confidence 577799999999999999999999999999999875321 011124554421 1111
Q ss_pred -------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHH
Q 002722 699 -------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHL 764 (888)
Q Consensus 699 -------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l 764 (888)
++.++.+++..+........+|+++++...+++ .+.+|+++|||||++|+|+.....+ +.++..+
T Consensus 94 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l-~~~l~~~ 172 (208)
T cd03268 94 RLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKEL-RELILSL 172 (208)
T ss_pred HHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHH-HHHHHHH
Confidence 223455666666666666778877766655444 5789999999999999999888888 6677777
Q ss_pred HhcCCCeEEEEecChhHH-HHhhh
Q 002722 765 VEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 765 ~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
.+ .|.++|++||+.+.. .++++
T Consensus 173 ~~-~~~tii~~tH~~~~~~~~~d~ 195 (208)
T cd03268 173 RD-QGITVLISSHLLSEIQKVADR 195 (208)
T ss_pred HH-CCCEEEEEcCCHHHHHHhcCE
Confidence 66 589999999998866 56776
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.1e-18 Score=176.81 Aligned_cols=143 Identities=15% Similarity=0.096 Sum_probs=103.7
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh------------------hcCcccccccc---cccH----
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA------------------QVGSFVPCDRA---SISV---- 698 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a------------------~~g~~vp~~~~---~~~~---- 698 (888)
.+.++++|++.+|++++|+||||||||||+|+++++.... +.-.|+|+... ..++
T Consensus 14 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l 93 (213)
T cd03301 14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNI 93 (213)
T ss_pred eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHH
Confidence 4667999999999999999999999999999998764211 00123443321 1111
Q ss_pred -----------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHH
Q 002722 699 -----------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAI 760 (888)
Q Consensus 699 -----------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~i 760 (888)
++.++.++|..+......+.+|+++++...+.+ .+.+|+++|||||++|+|+.....+ ..+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l-~~~ 172 (213)
T cd03301 94 AFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQM-RAE 172 (213)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH-HHH
Confidence 123456667766666667788888777655554 4789999999999999999988888 566
Q ss_pred HHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 761 CEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 761 l~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
+..+.++.|+++|++||+.+.. +++++
T Consensus 173 l~~~~~~~~~tvi~~sH~~~~~~~~~d~ 200 (213)
T cd03301 173 LKRLQQRLGTTTIYVTHDQVEAMTMADR 200 (213)
T ss_pred HHHHHHHcCCEEEEEeCCHHHHHHhcCe
Confidence 6666653489999999998654 56766
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.1e-18 Score=178.53 Aligned_cols=143 Identities=19% Similarity=0.145 Sum_probs=102.6
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh-----------------------hcCcccccccc---ccc
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA-----------------------QVGSFVPCDRA---SIS 697 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a-----------------------~~g~~vp~~~~---~~~ 697 (888)
.+.++++|++.+|++++|+||||||||||+|+++++.... +.-.|+|+... ..+
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 93 (235)
T cd03261 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLT 93 (235)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCc
Confidence 4677999999999999999999999999999998653110 11124444321 111
Q ss_pred HH----------------------HHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHH
Q 002722 698 VR----------------------DCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGF 754 (888)
Q Consensus 698 ~~----------------------d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~ 754 (888)
+. ..++.++|..+......+.+|+++++...+.+ .+.+|+++|||||++|+|+....
T Consensus 94 v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~ 173 (235)
T cd03261 94 VFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASG 173 (235)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHH
Confidence 21 22345556655555666788877777655554 47899999999999999998888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 755 GLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
.+ ..++..+.++.|.++|++||+.+.. .++++
T Consensus 174 ~l-~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~ 206 (235)
T cd03261 174 VI-DDLIRSLKKELGLTSIMVTHDLDTAFAIADR 206 (235)
T ss_pred HH-HHHHHHHHHhcCcEEEEEecCHHHHHHhcCE
Confidence 88 5666666653489999999998765 56776
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.5e-18 Score=175.63 Aligned_cols=142 Identities=22% Similarity=0.224 Sum_probs=101.7
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh----------------hcCcccccccc---cccH------
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA----------------QVGSFVPCDRA---SISV------ 698 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a----------------~~g~~vp~~~~---~~~~------ 698 (888)
.+.++++|++.+|++++|+|||||||||||++++++.... ..-.|+|+... ..++
T Consensus 14 ~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~ 93 (210)
T cd03269 14 TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVY 93 (210)
T ss_pred EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHHH
Confidence 4677899999999999999999999999999998763211 01123443321 1111
Q ss_pred ---------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHH
Q 002722 699 ---------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICE 762 (888)
Q Consensus 699 ---------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~il~ 762 (888)
+..++..+|..+........+|+++++...+.+ .+.+|+++|||||++|+|+.....+ ..+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~-~~~l~ 172 (210)
T cd03269 94 LAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELL-KDVIR 172 (210)
T ss_pred HHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH-HHHHH
Confidence 123445556655555556678877776655544 5789999999999999999888888 55666
Q ss_pred HHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 763 HLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 763 ~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
.+.+ .++++|++||+.+.. +++++
T Consensus 173 ~~~~-~~~tii~~sH~~~~~~~~~d~ 197 (210)
T cd03269 173 ELAR-AGKTVILSTHQMELVEELCDR 197 (210)
T ss_pred HHHH-CCCEEEEECCCHHHHHHhhhE
Confidence 6665 488999999998765 56776
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.7e-18 Score=177.52 Aligned_cols=143 Identities=18% Similarity=0.132 Sum_probs=103.6
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh-----------------------h-hcCcccccccc---cc
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-----------------------A-QVGSFVPCDRA---SI 696 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~-----------------------a-~~g~~vp~~~~---~~ 696 (888)
.+.++++|++.+|++++|+||||||||||||+++++... . +.-.|+|+... ..
T Consensus 19 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (221)
T TIGR02211 19 RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDF 98 (221)
T ss_pred EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCC
Confidence 467789999999999999999999999999999865210 0 11234444321 11
Q ss_pred cH---------------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHH
Q 002722 697 SV---------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGF 754 (888)
Q Consensus 697 ~~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~ 754 (888)
++ +..++..+|..+.+......+|+++++...+.+ .+.+|+++|||||++|+|+....
T Consensus 99 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~ 178 (221)
T TIGR02211 99 TALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAK 178 (221)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHH
Confidence 11 123455566666666667788887777655555 57899999999999999999888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 755 GLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
.+ ..++..+.++.|.++|++||+++....+++
T Consensus 179 ~l-~~~l~~~~~~~~~tii~~tH~~~~~~~~d~ 210 (221)
T TIGR02211 179 II-FDLMLELNRELNTSFLVVTHDLELAKKLDR 210 (221)
T ss_pred HH-HHHHHHHHHhcCCEEEEEeCCHHHHhhcCE
Confidence 88 566666664348899999999887665554
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.7e-18 Score=180.41 Aligned_cols=144 Identities=17% Similarity=0.109 Sum_probs=105.5
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh---------------hcCccccccccc---ccH------
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA---------------QVGSFVPCDRAS---ISV------ 698 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a---------------~~g~~vp~~~~~---~~~------ 698 (888)
..+.++++|++.+|++++|+||||||||||+|+++++.... +.-.|+|..... .++
T Consensus 25 ~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~ 104 (257)
T PRK11247 25 RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGL 104 (257)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHh
Confidence 35778999999999999999999999999999998764211 011244433211 111
Q ss_pred ---------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcC
Q 002722 699 ---------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEI 768 (888)
Q Consensus 699 ---------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~ 768 (888)
+..++.++|..+......+.+|+++++...+++ .+.+|+++|||||++|+|+.....+ ..++..+.++.
T Consensus 105 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l-~~~L~~~~~~~ 183 (257)
T PRK11247 105 GLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEM-QDLIESLWQQH 183 (257)
T ss_pred cccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHHHc
Confidence 234566677776667777888888777665555 4789999999999999999888888 55666665435
Q ss_pred CCeEEEEecChhHH-HHhhh
Q 002722 769 RAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 769 ~~~~l~~TH~~~l~-~~~~~ 787 (888)
+.++|++||+.+.. .++++
T Consensus 184 ~~tviivsHd~~~~~~~~d~ 203 (257)
T PRK11247 184 GFTVLLVTHDVSEAVAMADR 203 (257)
T ss_pred CCEEEEEeCCHHHHHHhCCE
Confidence 89999999998764 57776
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.8e-18 Score=176.97 Aligned_cols=143 Identities=15% Similarity=0.081 Sum_probs=103.0
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh------------------------hhcCcccccccc---cc
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM------------------------AQVGSFVPCDRA---SI 696 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~------------------------a~~g~~vp~~~~---~~ 696 (888)
.+.++++|++.+|++++|+||||||||||+|+++++... .+.-.|+|+... ..
T Consensus 24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~ 103 (228)
T PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTL 103 (228)
T ss_pred EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCc
Confidence 367899999999999999999999999999999876311 011224443321 11
Q ss_pred cHH---------------------HHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHH
Q 002722 697 SVR---------------------DCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGF 754 (888)
Q Consensus 697 ~~~---------------------d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~ 754 (888)
++. ..++..++..+.+......+|+++++...+++ .+.+|+++|||||++|+|+....
T Consensus 104 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~ 183 (228)
T PRK10584 104 NALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGD 183 (228)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Confidence 122 22345556655556666778877766655554 57899999999999999998888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 755 GLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
.+ ..++..++++.|.++|++||+.+....+++
T Consensus 184 ~l-~~~l~~~~~~~~~tii~~sH~~~~~~~~d~ 215 (228)
T PRK10584 184 KI-ADLLFSLNREHGTTLILVTHDLQLAARCDR 215 (228)
T ss_pred HH-HHHHHHHHHhcCCEEEEEecCHHHHHhCCE
Confidence 87 666666655358899999999887766665
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.4e-18 Score=174.94 Aligned_cols=142 Identities=23% Similarity=0.199 Sum_probs=103.4
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh--------------------hcCcccccccc----cccHH
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA--------------------QVGSFVPCDRA----SISVR 699 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a--------------------~~g~~vp~~~~----~~~~~ 699 (888)
.+.++++|++.+|++++|+||||||||||+|+++++.... +.-.|+|+... ..++.
T Consensus 15 ~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~ 94 (211)
T cd03225 15 PALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVE 94 (211)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHH
Confidence 4677999999999999999999999999999998753210 11124444321 11111
Q ss_pred ---------------------HHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHH
Q 002722 700 ---------------------DCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLA 757 (888)
Q Consensus 700 ---------------------d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~ 757 (888)
..++.++|..+.+....+.+|+++++...+++ .+.+|+++|||||++|+|+.....+
T Consensus 95 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~- 173 (211)
T cd03225 95 EEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRREL- 173 (211)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH-
Confidence 22455566666566667888887777655555 4789999999999999999988888
Q ss_pred HHHHHHHHhcCCCeEEEEecChhHHH-Hhhh
Q 002722 758 WAICEHLVEEIRAPTLFATHFHELTA-LAHE 787 (888)
Q Consensus 758 ~~il~~l~~~~~~~~l~~TH~~~l~~-~~~~ 787 (888)
..++..+.+ .|+++|++||+.+... ++++
T Consensus 174 ~~~l~~~~~-~~~tvi~~sH~~~~~~~~~d~ 203 (211)
T cd03225 174 LELLKKLKA-EGKTIIIVTHDLDLLLELADR 203 (211)
T ss_pred HHHHHHHHH-cCCEEEEEeCCHHHHHHhCCE
Confidence 556666666 4899999999987654 5665
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.6e-18 Score=178.47 Aligned_cols=143 Identities=17% Similarity=0.147 Sum_probs=102.8
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh-----------------------hhcCcccccccc---ccc
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-----------------------AQVGSFVPCDRA---SIS 697 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~-----------------------a~~g~~vp~~~~---~~~ 697 (888)
.+.++++|++.+|++++|+||||||||||||+++++... .+.-.|+|+... ..+
T Consensus 16 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 95 (243)
T TIGR02315 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLT 95 (243)
T ss_pred ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccccccc
Confidence 467799999999999999999999999999999865311 111124443321 111
Q ss_pred HH-----------------------------HHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCC
Q 002722 698 VR-----------------------------DCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRG 747 (888)
Q Consensus 698 ~~-----------------------------d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~g 747 (888)
+. ..++..+|..+........+|+++++...+++ .+.+|+++|||||++|
T Consensus 96 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 175 (243)
T TIGR02315 96 VLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIAS 175 (243)
T ss_pred HHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 11 22345566655556666788877777655555 4789999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
+|+.....+ ..+++.+.++.|+++|++||+.+.. +++++
T Consensus 176 LD~~~~~~l-~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~ 215 (243)
T TIGR02315 176 LDPKTSKQV-MDYLKRINKEDGITVIINLHQVDLAKKYADR 215 (243)
T ss_pred CCHHHHHHH-HHHHHHHHHHcCCEEEEEeCCHHHHHHhcCe
Confidence 999888877 6666666543489999999998765 56766
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.6e-18 Score=178.22 Aligned_cols=143 Identities=17% Similarity=0.141 Sum_probs=102.5
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh-----------------------hhcCcccccccc---ccc
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-----------------------AQVGSFVPCDRA---SIS 697 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~-----------------------a~~g~~vp~~~~---~~~ 697 (888)
.+.++++|++.+|++++|+||||||||||+|+++++... .+.-.|+|+... ..+
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 94 (241)
T cd03256 15 KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLS 94 (241)
T ss_pred EEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCc
Confidence 567799999999999999999999999999999865311 011124443321 111
Q ss_pred HH-----------------------------HHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCC
Q 002722 698 VR-----------------------------DCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRG 747 (888)
Q Consensus 698 ~~-----------------------------d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~g 747 (888)
+. ..++..++..+........+|+++++...+++ .+.+|+++|||||++|
T Consensus 95 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~ 174 (241)
T cd03256 95 VLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVAS 174 (241)
T ss_pred HHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCcccc
Confidence 11 12344555555555566778877777655554 5789999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHH-Hhhh
Q 002722 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTA-LAHE 787 (888)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~-~~~~ 787 (888)
+|+.....+ ..++..+.++.|.++|++||+++... ++++
T Consensus 175 LD~~~~~~l-~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~ 214 (241)
T cd03256 175 LDPASSRQV-MDLLKRINREEGITVIVSLHQVDLAREYADR 214 (241)
T ss_pred CCHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 999888888 66667776535899999999987765 7776
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.7e-17 Score=160.82 Aligned_cols=154 Identities=18% Similarity=0.174 Sum_probs=114.1
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHh------------------------hhhcCcccccccc---c
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL------------------------MAQVGSFVPCDRA---S 695 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~------------------------~a~~g~~vp~~~~---~ 695 (888)
....++++|++.+|+++-|+||+|||||||||.|..... ..|+|. |.++.. .
T Consensus 15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGv-VFQD~rLL~~ 93 (223)
T COG2884 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGV-VFQDFRLLPD 93 (223)
T ss_pred chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeee-Eeeecccccc
Confidence 346779999999999999999999999999999875432 123442 111110 0
Q ss_pred ccH---------------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhH
Q 002722 696 ISV---------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDG 753 (888)
Q Consensus 696 ~~~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~slvllDEp~~gtd~~~~ 753 (888)
.++ +...+..+|+.+....-.+.+|++.+|...|.++ +.+|.++|.||||.++||...
T Consensus 94 ~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s 173 (223)
T COG2884 94 RTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLS 173 (223)
T ss_pred chHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHH
Confidence 111 2245777888888888888998776666666554 789999999999999999988
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhhccccccccccccEeEEEEEE
Q 002722 754 FGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSA 807 (888)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (888)
..| ..+++.+.. .|.|||++|||.++.+-..+. ...+.++++.-
T Consensus 174 ~~i-m~lfeeinr-~GtTVl~ATHd~~lv~~~~~r--------vl~l~~Grl~~ 217 (223)
T COG2884 174 WEI-MRLFEEINR-LGTTVLMATHDLELVNRMRHR--------VLALEDGRLVR 217 (223)
T ss_pred HHH-HHHHHHHhh-cCcEEEEEeccHHHHHhccCc--------EEEEeCCEEEe
Confidence 888 778888887 799999999999988654431 33455665543
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.74 E-value=8e-18 Score=186.17 Aligned_cols=153 Identities=17% Similarity=0.138 Sum_probs=115.7
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh------------------------hhcCccccccccc---c
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM------------------------AQVGSFVPCDRAS---I 696 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~------------------------a~~g~~vp~~~~~---~ 696 (888)
.+.++++|++.+|++++|+||||||||||+|+++++.-. ..+ .|+|+...- .
T Consensus 19 ~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~I-g~v~Q~~~l~~~~ 97 (343)
T TIGR02314 19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQI-GMIFQHFNLLSSR 97 (343)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCE-EEEECCccccccC
Confidence 467899999999999999999999999999999865311 012 233433211 1
Q ss_pred cH---------------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHH
Q 002722 697 SV---------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGF 754 (888)
Q Consensus 697 ~~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~ 754 (888)
++ +..++.++|+.+......+.+|++++|...|.+ .+++|+++|+||||+|+|+....
T Consensus 98 tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~ 177 (343)
T TIGR02314 98 TVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQ 177 (343)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHH
Confidence 11 224566678877777788899988877766655 47899999999999999999988
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEEE
Q 002722 755 GLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSA 807 (888)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (888)
.+ ..+++.+.++.|.++|++||+++.. ++|++ +..+.++++..
T Consensus 178 ~i-~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~---------v~vl~~G~iv~ 221 (343)
T TIGR02314 178 SI-LELLKEINRRLGLTILLITHEMDVVKRICDC---------VAVISNGELIE 221 (343)
T ss_pred HH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE---------EEEEECCEEEE
Confidence 88 7777888764589999999998876 67887 55666666643
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-17 Score=177.26 Aligned_cols=142 Identities=20% Similarity=0.177 Sum_probs=102.7
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh---------------------hcCcccccccc---cccH-
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA---------------------QVGSFVPCDRA---SISV- 698 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a---------------------~~g~~vp~~~~---~~~~- 698 (888)
.+.++++|++.+|++++|+||||||||||||+++++.... ..-.|+|+... ..++
T Consensus 14 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~ 93 (236)
T cd03219 14 VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVL 93 (236)
T ss_pred EEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHH
Confidence 4677999999999999999999999999999998753110 11124443321 0111
Q ss_pred ------------------------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCC
Q 002722 699 ------------------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRG 747 (888)
Q Consensus 699 ------------------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~g 747 (888)
+..++..+|..+......+.+|+++++...+.+ .+.+|+++|||||++|
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 173 (236)
T cd03219 94 ENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAG 173 (236)
T ss_pred HHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 123344556655555666788877777655554 4789999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
+|+.....+ +.++..+.+ .|+++|++||+.+.. .++++
T Consensus 174 LD~~~~~~l-~~~l~~~~~-~~~tii~vsH~~~~~~~~~d~ 212 (236)
T cd03219 174 LNPEETEEL-AELIRELRE-RGITVLLVEHDMDVVMSLADR 212 (236)
T ss_pred CCHHHHHHH-HHHHHHHHH-CCCEEEEEecCHHHHHHhCCE
Confidence 999888887 667777766 589999999998776 56776
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.8e-18 Score=177.18 Aligned_cols=143 Identities=16% Similarity=0.110 Sum_probs=102.9
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh------------------------hhcCcccccccc---cc
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM------------------------AQVGSFVPCDRA---SI 696 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~------------------------a~~g~~vp~~~~---~~ 696 (888)
.+.++++|++.+|++++|+||||||||||+|+++++... .+.-.|+|.... ..
T Consensus 23 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (233)
T PRK11629 23 DVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDF 102 (233)
T ss_pred eeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCC
Confidence 577899999999999999999999999999999875311 011124443321 01
Q ss_pred cH---------------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHH
Q 002722 697 SV---------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGF 754 (888)
Q Consensus 697 ~~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~ 754 (888)
++ +..++.++|..+........+|+++++...+.+ .+.+|+++|||||++|+|+....
T Consensus 103 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~ 182 (233)
T PRK11629 103 TALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNAD 182 (233)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Confidence 11 123455566665556666778877777655554 57899999999999999998888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 755 GLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
.+ ..++..+.+..|.++|++||+.+....+++
T Consensus 183 ~l-~~~l~~~~~~~g~tvii~sH~~~~~~~~~~ 214 (233)
T PRK11629 183 SI-FQLLGELNRLQGTAFLVVTHDLQLAKRMSR 214 (233)
T ss_pred HH-HHHHHHHHHhCCCEEEEEeCCHHHHHhhCE
Confidence 87 666777754358999999999887654433
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-17 Score=176.52 Aligned_cols=153 Identities=17% Similarity=0.078 Sum_probs=108.6
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh-----------------------hhcCcccccccc---ccc
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-----------------------AQVGSFVPCDRA---SIS 697 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~-----------------------a~~g~~vp~~~~---~~~ 697 (888)
.+.++++|++.+|++++|+||||||||||+|+++++... .+.-.|+|.... ..+
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRT 98 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCc
Confidence 466789999999999999999999999999999865311 011124444321 111
Q ss_pred HH---------------------HHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHH
Q 002722 698 VR---------------------DCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFG 755 (888)
Q Consensus 698 ~~---------------------d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~ 755 (888)
+. ..++.++|..+......+.+|+++++...+++ .+.+|+++|||||++|+|+.....
T Consensus 99 ~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~ 178 (233)
T cd03258 99 VFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQS 178 (233)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHH
Confidence 21 23455566666666667788877766655554 578999999999999999988888
Q ss_pred HHHHHHHHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEE
Q 002722 756 LAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 756 i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
+ +.++..+.++.|+++|++||+.+.. .++++ +..+.++++.
T Consensus 179 l-~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~---------i~~l~~G~i~ 220 (233)
T cd03258 179 I-LALLRDINRELGLTIVLITHEMEVVKRICDR---------VAVMEKGEVV 220 (233)
T ss_pred H-HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCE---------EEEEECCEEE
Confidence 8 5666666553489999999998765 56776 5555555553
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.2e-18 Score=168.30 Aligned_cols=134 Identities=18% Similarity=0.138 Sum_probs=91.5
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhcCcc-ccccc-ccccHHHHHHHhcCCchhhhhccchhHH
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSF-VPCDR-ASISVRDCIFARVGAGDCQLRGVSTFMQ 721 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~g~~-vp~~~-~~~~~~d~i~~~~~~~d~~~~~~s~f~~ 721 (888)
.+.++++|++.+|++++|+||||||||||||+++++.... .|.. +.... ...+..+..-.+++.. ..+|+
T Consensus 14 ~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~-~G~v~~~g~~~~~~~~~~~~~~~i~~~-------~qLS~ 85 (163)
T cd03216 14 KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD-SGEILVDGKEVSFASPRDARRAGIAMV-------YQLSV 85 (163)
T ss_pred EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCEECCcCCHHHHHhcCeEEE-------EecCH
Confidence 4667899999999999999999999999999998865322 2221 11111 1111111111112211 11666
Q ss_pred HHHHHHHH-HHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhH-HHHhhh
Q 002722 722 EMLETASI-LKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHEL-TALAHE 787 (888)
Q Consensus 722 e~~~~~~i-l~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l-~~~~~~ 787 (888)
++++...+ ...+.+|+++|||||++|+|+.....+ ..++..+.+ .+.++|++||+++. .+++++
T Consensus 86 G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l-~~~l~~~~~-~~~tiii~sh~~~~~~~~~d~ 151 (163)
T cd03216 86 GERQMVEIARALARNARLLILDEPTAALTPAEVERL-FKVIRRLRA-QGVAVIFISHRLDEVFEIADR 151 (163)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHH-HHHHHHHHH-CCCEEEEEeCCHHHHHHhCCE
Confidence 66555444 445889999999999999999988888 566666665 48999999999875 456776
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-17 Score=176.10 Aligned_cols=142 Identities=15% Similarity=0.120 Sum_probs=102.3
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh---------------------hcCcccccccc---cccH-
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA---------------------QVGSFVPCDRA---SISV- 698 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a---------------------~~g~~vp~~~~---~~~~- 698 (888)
.+.++++|++.+|++++|+||||||||||||+++++.... +.-.|+|+... ..++
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 93 (232)
T cd03218 14 KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVE 93 (232)
T ss_pred EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHH
Confidence 4678999999999999999999999999999998753210 11123443321 0111
Q ss_pred --------------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHH
Q 002722 699 --------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLA 757 (888)
Q Consensus 699 --------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~ 757 (888)
++.++..+|..+........+|+++++...+++ .+.+|+++|||||++|+|+.....+
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~- 172 (232)
T cd03218 94 ENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDI- 172 (232)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHH-
Confidence 123445556655556666778877776655544 5789999999999999999888887
Q ss_pred HHHHHHHHhcCCCeEEEEecChh-HHHHhhh
Q 002722 758 WAICEHLVEEIRAPTLFATHFHE-LTALAHE 787 (888)
Q Consensus 758 ~~il~~l~~~~~~~~l~~TH~~~-l~~~~~~ 787 (888)
..+++.+.+ .|.++|++||+.+ +.+++++
T Consensus 173 ~~~l~~~~~-~~~tii~~sH~~~~~~~~~d~ 202 (232)
T cd03218 173 QKIIKILKD-RGIGVLITDHNVRETLSITDR 202 (232)
T ss_pred HHHHHHHHH-CCCEEEEEeCCHHHHHHhCCE
Confidence 667777766 5899999999985 4567776
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.3e-18 Score=175.36 Aligned_cols=142 Identities=18% Similarity=0.127 Sum_probs=102.7
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh-----------------------hhcCcccccccc---ccc
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-----------------------AQVGSFVPCDRA---SIS 697 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~-----------------------a~~g~~vp~~~~---~~~ 697 (888)
.+.++++|++.+|++++|+||||||||||+|+++++... .+.-.|+|.... ..+
T Consensus 16 ~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 95 (214)
T TIGR02673 16 AALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRT 95 (214)
T ss_pred eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCc
Confidence 567899999999999999999999999999999875311 011124443321 111
Q ss_pred H---------------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHH
Q 002722 698 V---------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFG 755 (888)
Q Consensus 698 ~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~ 755 (888)
+ +..++.+++..+........+|+++++...+++ .+.+|+++|||||++|+|+.....
T Consensus 96 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~ 175 (214)
T TIGR02673 96 VYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSER 175 (214)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHH
Confidence 1 123445566665556666788877777655555 578999999999999999998888
Q ss_pred HHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 756 LAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 756 i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
+ ..+++.+.+ .|.++|++||+++.. .++++
T Consensus 176 l-~~~l~~~~~-~~~tii~~tH~~~~~~~~~d~ 206 (214)
T TIGR02673 176 I-LDLLKRLNK-RGTTVIVATHDLSLVDRVAHR 206 (214)
T ss_pred H-HHHHHHHHH-cCCEEEEEeCCHHHHHHhcCE
Confidence 8 566666665 589999999998765 46665
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=99.74 E-value=1e-17 Score=177.45 Aligned_cols=144 Identities=19% Similarity=0.177 Sum_probs=103.7
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh-------------------hcCcccccccc---cccH--
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA-------------------QVGSFVPCDRA---SISV-- 698 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a-------------------~~g~~vp~~~~---~~~~-- 698 (888)
..+.++++|++.+|++++|+||||||||||+|+++++..+. +...|+|+... ..++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~ 93 (236)
T TIGR03864 14 RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQ 93 (236)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHH
Confidence 35778999999999999999999999999999998753210 01124443321 1111
Q ss_pred -------------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHH
Q 002722 699 -------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAW 758 (888)
Q Consensus 699 -------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~ 758 (888)
+..++.++|..+.+......+|+++++...+.+ .+.+|+++|||||++|+|+.....+ .
T Consensus 94 ~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l-~ 172 (236)
T TIGR03864 94 NLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAI-V 172 (236)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHH-H
Confidence 123455566665566667788877776655544 5889999999999999999988888 5
Q ss_pred HHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 759 AICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 759 ~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
.++..+.++.|.++|++||+.+....+++
T Consensus 173 ~~l~~~~~~~~~tiii~sH~~~~~~~~d~ 201 (236)
T TIGR03864 173 AHVRALCRDQGLSVLWATHLVDEIEADDR 201 (236)
T ss_pred HHHHHHHHhCCCEEEEEecChhhHhhCCE
Confidence 56666664358999999999987766665
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-17 Score=177.59 Aligned_cols=143 Identities=18% Similarity=0.126 Sum_probs=102.4
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh------------------hcCcccccccc---cccH----
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA------------------QVGSFVPCDRA---SISV---- 698 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a------------------~~g~~vp~~~~---~~~~---- 698 (888)
.+.++++|++.+|++++|+||||||||||+|+++++.... +.-.|+|+... ..++
T Consensus 16 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l 95 (239)
T cd03296 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNV 95 (239)
T ss_pred EeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHH
Confidence 5677999999999999999999999999999998764211 00123443321 1111
Q ss_pred ---------------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHH
Q 002722 699 ---------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGL 756 (888)
Q Consensus 699 ---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i 756 (888)
+..++.++|..+........+|+++++...+++ .+.+|+++|||||++|+|+.....+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l 175 (239)
T cd03296 96 AFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKEL 175 (239)
T ss_pred hhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 123445556655555566778877777655555 4789999999999999999888888
Q ss_pred HHHHHHHHHhcCCCeEEEEecChhH-HHHhhh
Q 002722 757 AWAICEHLVEEIRAPTLFATHFHEL-TALAHE 787 (888)
Q Consensus 757 ~~~il~~l~~~~~~~~l~~TH~~~l-~~~~~~ 787 (888)
..++..+.++.|+++|++||+.+. ..++++
T Consensus 176 -~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~ 206 (239)
T cd03296 176 -RRWLRRLHDELHVTTVFVTHDQEEALEVADR 206 (239)
T ss_pred -HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCE
Confidence 666677765348899999999875 456776
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-17 Score=174.36 Aligned_cols=142 Identities=18% Similarity=0.129 Sum_probs=103.1
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh----------------------hhcCcccccccc---cccH
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----------------------AQVGSFVPCDRA---SISV 698 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~----------------------a~~g~~vp~~~~---~~~~ 698 (888)
.+.++++|++.+|++++|+||||||||||||+++++... .+.-.|+|.... ..++
T Consensus 14 ~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 93 (213)
T cd03262 14 HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTV 93 (213)
T ss_pred EeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcH
Confidence 467799999999999999999999999999999875321 011124443321 1111
Q ss_pred H----------------------HHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHH
Q 002722 699 R----------------------DCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFG 755 (888)
Q Consensus 699 ~----------------------d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~ 755 (888)
. ..++.++|....+......+|+++++...+.+ .+.+|+++|||||++|+|+.....
T Consensus 94 ~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~ 173 (213)
T cd03262 94 LENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGE 173 (213)
T ss_pred HHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHH
Confidence 1 23445566655566666788877777655554 578999999999999999988887
Q ss_pred HHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 756 LAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 756 i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
+ ..++..+.+ .|.++|++||+.+.. +++++
T Consensus 174 l-~~~l~~~~~-~~~tvi~~sh~~~~~~~~~d~ 204 (213)
T cd03262 174 V-LDVMKDLAE-EGMTMVVVTHEMGFAREVADR 204 (213)
T ss_pred H-HHHHHHHHH-cCCEEEEEeCCHHHHHHhCCE
Confidence 7 666777766 588999999998765 56766
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.6e-18 Score=177.84 Aligned_cols=157 Identities=15% Similarity=0.080 Sum_probs=107.4
Q ss_pred cCcCceeeeccCcccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh-------------------hcCcccc
Q 002722 630 GSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA-------------------QVGSFVP 690 (888)
Q Consensus 630 ~~rhp~~~~~~~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a-------------------~~g~~vp 690 (888)
+.-|+.+...-+...+.++++|++.+|++++|+||||||||||||+++++.... +...|+|
T Consensus 21 ~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~ 100 (236)
T cd03267 21 GSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVF 100 (236)
T ss_pred hhHHHHHhcccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEc
Confidence 344444433223456888999999999999999999999999999998764210 0112343
Q ss_pred ccc----ccccHH---------------------HHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCC
Q 002722 691 CDR----ASISVR---------------------DCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDEL 744 (888)
Q Consensus 691 ~~~----~~~~~~---------------------d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp 744 (888)
+.. ...++. ..++..+|..+........+|+++++...+.+ .+.+|+++|||||
T Consensus 101 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 180 (236)
T cd03267 101 GQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEP 180 (236)
T ss_pred CCccccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 211 111111 12344455555555556678877776655544 5789999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 745 GRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 745 ~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
++|+|+.....+ ..++..+.++.++++|++||+++.. .++++
T Consensus 181 t~~LD~~~~~~l-~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~ 223 (236)
T cd03267 181 TIGLDVVAQENI-RNFLKEYNRERGTTVLLTSHYMKDIEALARR 223 (236)
T ss_pred CCCCCHHHHHHH-HHHHHHHHhcCCCEEEEEecCHHHHHHhCCE
Confidence 999999988888 5566666653588999999998765 56776
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.73 E-value=1e-17 Score=171.29 Aligned_cols=137 Identities=18% Similarity=0.133 Sum_probs=100.0
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh----------------------hhcCcccccccc----cc
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----------------------AQVGSFVPCDRA----SI 696 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~----------------------a~~g~~vp~~~~----~~ 696 (888)
..+.++++|++.+|++++|+||||||||||+|+++++... .+.-.|+|+... ..
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 4577899999999999999999999999999999865311 011134454321 01
Q ss_pred cH---------------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHH
Q 002722 697 SV---------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGF 754 (888)
Q Consensus 697 ~~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~ 754 (888)
++ ++.++.++|..+......+.+|+++++...+.+ .+.+|+++|||||++|+|+....
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 164 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGRE 164 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 11 123445566666666667788877776655554 47899999999999999998888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecChhH
Q 002722 755 GLAWAICEHLVEEIRAPTLFATHFHEL 781 (888)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~~l 781 (888)
.+ ..++..+.+ .|.++|++||+.++
T Consensus 165 ~~-~~~l~~~~~-~~~tili~sH~~~~ 189 (190)
T TIGR01166 165 QM-LAILRRLRA-EGMTVVISTHDVDL 189 (190)
T ss_pred HH-HHHHHHHHH-cCCEEEEEeecccc
Confidence 88 666666766 58999999999864
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=99.73 E-value=1e-17 Score=174.72 Aligned_cols=142 Identities=16% Similarity=0.144 Sum_probs=101.9
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh-----------------------hhcCccccccccc---cc
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-----------------------AQVGSFVPCDRAS---IS 697 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~-----------------------a~~g~~vp~~~~~---~~ 697 (888)
.+.++++|++.+|++++|+||||||||||+|+++++... .+.-.|+|++..- .+
T Consensus 15 ~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 94 (214)
T cd03292 15 AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRN 94 (214)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCc
Confidence 466789999999999999999999999999999875311 0112344433211 11
Q ss_pred H---------------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHH
Q 002722 698 V---------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFG 755 (888)
Q Consensus 698 ~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~ 755 (888)
+ +..++.++|..+........+|+++++...+++ .+.+|+++|||||++|+|+.....
T Consensus 95 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 174 (214)
T cd03292 95 VYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWE 174 (214)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHH
Confidence 1 123455566665555566778877776655554 478999999999999999988888
Q ss_pred HHHHHHHHHHhcCCCeEEEEecChhHHH-Hhhh
Q 002722 756 LAWAICEHLVEEIRAPTLFATHFHELTA-LAHE 787 (888)
Q Consensus 756 i~~~il~~l~~~~~~~~l~~TH~~~l~~-~~~~ 787 (888)
+ ..+++.+.+ .|.++|++||+.+... ++++
T Consensus 175 ~-~~~l~~~~~-~~~tiiivtH~~~~~~~~~d~ 205 (214)
T cd03292 175 I-MNLLKKINK-AGTTVVVATHAKELVDTTRHR 205 (214)
T ss_pred H-HHHHHHHHH-cCCEEEEEeCCHHHHHHhCCE
Confidence 8 556666665 4899999999987664 6665
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-17 Score=173.89 Aligned_cols=142 Identities=22% Similarity=0.233 Sum_probs=103.5
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh---------------hhcCccccccccc-----ccH-----
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM---------------AQVGSFVPCDRAS-----ISV----- 698 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~---------------a~~g~~vp~~~~~-----~~~----- 698 (888)
.+.++++|++.+|++++|+||||||||||+|+++++... .+.-.|+|+.... .++
T Consensus 13 ~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~ 92 (213)
T cd03235 13 PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVL 92 (213)
T ss_pred EeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHH
Confidence 467789999999999999999999999999999876321 1111244433210 111
Q ss_pred --------------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHH
Q 002722 699 --------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLA 757 (888)
Q Consensus 699 --------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~ 757 (888)
+..++..+|..+......+.+|+++++...+.+ .+.+|+++||||||+|+|+.....+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l- 171 (213)
T cd03235 93 MGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDI- 171 (213)
T ss_pred hccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH-
Confidence 223455566666666667788888777666555 4789999999999999999988888
Q ss_pred HHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 758 WAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 758 ~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
..++..+.+ .|.++|++||+.+.. +++++
T Consensus 172 ~~~l~~~~~-~~~tvi~~sH~~~~~~~~~d~ 201 (213)
T cd03235 172 YELLRELRR-EGMTILVVTHDLGLVLEYFDR 201 (213)
T ss_pred HHHHHHHHh-cCCEEEEEeCCHHHHHHhcCE
Confidence 556666665 589999999998765 56666
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-17 Score=183.31 Aligned_cols=154 Identities=14% Similarity=0.195 Sum_probs=113.4
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh-------------------hhcCcccccccc---cccH--
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-------------------AQVGSFVPCDRA---SISV-- 698 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~-------------------a~~g~~vp~~~~---~~~~-- 698 (888)
..+.++++|++.+|++++|+||||||||||||+++++... .+.-.|+|.... .+++
T Consensus 15 ~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e 94 (301)
T TIGR03522 15 QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVRE 94 (301)
T ss_pred EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHH
Confidence 3577899999999999999999999999999999875311 111234444321 1111
Q ss_pred -------------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHH
Q 002722 699 -------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAW 758 (888)
Q Consensus 699 -------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~ 758 (888)
++.++..+|..+......+.+|++|++...+.+ .+.+|+++|||||++|+|+.....+ +
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l-~ 173 (301)
T TIGR03522 95 YLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEI-R 173 (301)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH-H
Confidence 233455567666666777888888877655554 4889999999999999999888887 6
Q ss_pred HHHHHHHhcCCCeEEEEecChhH-HHHhhhccccccccccccEeEEEEEEE
Q 002722 759 AICEHLVEEIRAPTLFATHFHEL-TALAHENANEFNTKQMVGVANYHVSAH 808 (888)
Q Consensus 759 ~il~~l~~~~~~~~l~~TH~~~l-~~~~~~~~~~~~~~~~~~v~~~~~~~~ 808 (888)
.++..+.+ +.++|++||+++. .++|++ +..+.++++...
T Consensus 174 ~~l~~~~~--~~tiii~sH~l~~~~~~~d~---------i~~l~~G~i~~~ 213 (301)
T TIGR03522 174 NVIKNIGK--DKTIILSTHIMQEVEAICDR---------VIIINKGKIVAD 213 (301)
T ss_pred HHHHHhcC--CCEEEEEcCCHHHHHHhCCE---------EEEEECCEEEEe
Confidence 67777754 6899999999874 568888 666777777653
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-17 Score=181.18 Aligned_cols=154 Identities=15% Similarity=0.098 Sum_probs=112.3
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh----------------------hhcCccccccc----cccc
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----------------------AQVGSFVPCDR----ASIS 697 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~----------------------a~~g~~vp~~~----~~~~ 697 (888)
.+.++++|++.+|++++|+||||||||||+|+++++... .+...|+|+.. ...+
T Consensus 21 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 100 (287)
T PRK13637 21 KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEET 100 (287)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhcccccc
Confidence 577899999999999999999999999999999865311 11123555542 1111
Q ss_pred H---------------------HHHHHHhcCCc--hhhhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhH
Q 002722 698 V---------------------RDCIFARVGAG--DCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDG 753 (888)
Q Consensus 698 ~---------------------~d~i~~~~~~~--d~~~~~~s~f~~e~~~~~~il~~-~~~~slvllDEp~~gtd~~~~ 753 (888)
+ ++.++..+|+. +......+.+|+++++...+.++ +.+|+++|||||++|+|+...
T Consensus 101 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~ 180 (287)
T PRK13637 101 IEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGR 180 (287)
T ss_pred HHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHH
Confidence 1 12345556765 44556678888888777666654 789999999999999999888
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEEE
Q 002722 754 FGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSA 807 (888)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (888)
..+ +.++..+.++.|.++|++||+++.+ .++++ +..+.++.+..
T Consensus 181 ~~l-~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dr---------v~~l~~G~i~~ 225 (287)
T PRK13637 181 DEI-LNKIKELHKEYNMTIILVSHSMEDVAKLADR---------IIVMNKGKCEL 225 (287)
T ss_pred HHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE---------EEEEECCEEEE
Confidence 888 6777777653589999999998766 57887 55555555543
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.2e-17 Score=176.49 Aligned_cols=142 Identities=17% Similarity=0.111 Sum_probs=102.3
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh----------------------------hhcCccccccccc
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----------------------------AQVGSFVPCDRAS 695 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~----------------------------a~~g~~vp~~~~~ 695 (888)
.+.++++|++.+|++++|+||||||||||+|+++++... ...-.|+|.....
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 96 (250)
T PRK11264 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNL 96 (250)
T ss_pred eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCccc
Confidence 577899999999999999999999999999999875311 0011244433211
Q ss_pred ---ccHH----------------------HHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCC
Q 002722 696 ---ISVR----------------------DCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTS 749 (888)
Q Consensus 696 ---~~~~----------------------d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd 749 (888)
.++. ..++.++|..+......+.+|+++++...+++ .+.+|+++|||||++|+|
T Consensus 97 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD 176 (250)
T PRK11264 97 FPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALD 176 (250)
T ss_pred CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 1111 12344456555555566778877777655554 478999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 750 TYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 750 ~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
+.....+ ..+++.+.+ .|.++|++||+.+.. +++++
T Consensus 177 ~~~~~~l-~~~l~~~~~-~~~tvi~~tH~~~~~~~~~d~ 213 (250)
T PRK11264 177 PELVGEV-LNTIRQLAQ-EKRTMVIVTHEMSFARDVADR 213 (250)
T ss_pred HHHHHHH-HHHHHHHHh-cCCEEEEEeCCHHHHHHhcCE
Confidence 9888887 666777766 589999999998765 56776
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.8e-17 Score=173.41 Aligned_cols=142 Identities=19% Similarity=0.220 Sum_probs=103.5
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh-------------------hcCcccccccc---cccH---
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA-------------------QVGSFVPCDRA---SISV--- 698 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a-------------------~~g~~vp~~~~---~~~~--- 698 (888)
.+.++++|++.+|++++|+||||||||||||+++++.... +.-.|+|.... ..++
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 98 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTAREN 98 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHH
Confidence 4677999999999999999999999999999998764211 11123443321 1111
Q ss_pred ------------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHH
Q 002722 699 ------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWA 759 (888)
Q Consensus 699 ------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~ 759 (888)
++.++.++|..+.+......+|+++++...+++ .+.+|+++|||||++|+|+.....+ ..
T Consensus 99 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l-~~ 177 (218)
T cd03266 99 LEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRAL-RE 177 (218)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHH-HH
Confidence 123456667766666667778877766655554 4789999999999999999888888 66
Q ss_pred HHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 760 ICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 760 il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
++..+.+ .|+++|++||+.+.. .++++
T Consensus 178 ~l~~~~~-~~~tii~~tH~~~~~~~~~d~ 205 (218)
T cd03266 178 FIRQLRA-LGKCILFSTHIMQEVERLCDR 205 (218)
T ss_pred HHHHHHH-CCCEEEEEeCCHHHHHHhcCE
Confidence 6666665 589999999998754 56776
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-17 Score=187.31 Aligned_cols=154 Identities=18% Similarity=0.221 Sum_probs=113.4
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh--------------------hhcCcccccccc---ccc--
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRA---SIS-- 697 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~--------------------a~~g~~vp~~~~---~~~-- 697 (888)
..+.++++|++.+|++++|+||||||||||||+++++... ++.-.++|++.. .++
T Consensus 16 ~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~ 95 (402)
T PRK09536 16 TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVR 95 (402)
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHH
Confidence 3567799999999999999999999999999999875321 111123443321 011
Q ss_pred -----------------------HHHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhH
Q 002722 698 -----------------------VRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDG 753 (888)
Q Consensus 698 -----------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~ 753 (888)
.++.++.++|+.+...+....+|++++|...+.+ .+.+|+++|||||++|+|+...
T Consensus 96 e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~ 175 (402)
T PRK09536 96 QVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQ 175 (402)
T ss_pred HHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHH
Confidence 1234556677776667777888877777655555 4789999999999999999988
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEEE
Q 002722 754 FGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSA 807 (888)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (888)
..+ ..+++.+.+ .|.++|++||+++++ +++++ +..+.++++..
T Consensus 176 ~~l-~~lL~~l~~-~g~TIIivsHdl~~~~~~adr---------ii~l~~G~iv~ 219 (402)
T PRK09536 176 VRT-LELVRRLVD-DGKTAVAAIHDLDLAARYCDE---------LVLLADGRVRA 219 (402)
T ss_pred HHH-HHHHHHHHh-cCCEEEEEECCHHHHHHhCCE---------EEEEECCEEEE
Confidence 888 677777876 588999999998877 67887 55566665543
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-17 Score=177.88 Aligned_cols=144 Identities=17% Similarity=0.168 Sum_probs=103.7
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh--------------------hcC-cccccccc---cccH
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA--------------------QVG-SFVPCDRA---SISV 698 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a--------------------~~g-~~vp~~~~---~~~~ 698 (888)
..+.++++|++.+|++++|+||||||||||+|+++++.-.. ..+ .|+|.... ..++
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 97 (255)
T PRK11300 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTV 97 (255)
T ss_pred EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcH
Confidence 35777999999999999999999999999999998753110 111 13343321 1111
Q ss_pred ------------------------------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEE
Q 002722 699 ------------------------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIII 741 (888)
Q Consensus 699 ------------------------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvll 741 (888)
+..++..+|..+........+|+++++...+.+ .+.+|+++||
T Consensus 98 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 177 (255)
T PRK11300 98 IENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILML 177 (255)
T ss_pred HHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 122344566666566667778877776655555 4789999999
Q ss_pred eCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 742 DELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 742 DEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
|||++|+|+.....+ +.++..+.++.|+++|++||+.+.. +++++
T Consensus 178 DEPt~~LD~~~~~~l-~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~ 223 (255)
T PRK11300 178 DEPAAGLNPKETKEL-DELIAELRNEHNVTVLLIEHDMKLVMGISDR 223 (255)
T ss_pred cCCccCCCHHHHHHH-HHHHHHHHhhcCCEEEEEeCCHHHHHHhCCE
Confidence 999999999888888 6677777653489999999998765 56776
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-17 Score=185.60 Aligned_cols=154 Identities=16% Similarity=0.107 Sum_probs=113.0
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh-------------------hcCccccccccc---ccH--
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA-------------------QVGSFVPCDRAS---ISV-- 698 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a-------------------~~g~~vp~~~~~---~~~-- 698 (888)
..+.++++|++.+|++++|+||||||||||||+|+++.... .+ .|||+..+- +++
T Consensus 17 ~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~i-g~v~Q~~~lfp~~tv~e 95 (356)
T PRK11650 17 TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDI-AMVFQNYALYPHMSVRE 95 (356)
T ss_pred CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCE-EEEeCCccccCCCCHHH
Confidence 35677999999999999999999999999999998764211 11 234433211 111
Q ss_pred -------------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHH
Q 002722 699 -------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAW 758 (888)
Q Consensus 699 -------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~ 758 (888)
++.++..+|+.+...+....+|++++|...+.+ .+.+|+++|||||++|+|+.....+ .
T Consensus 96 Ni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l-~ 174 (356)
T PRK11650 96 NMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQM-R 174 (356)
T ss_pred HHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-H
Confidence 234566677777777777888887777655555 4789999999999999999999888 5
Q ss_pred HHHHHHHhcCCCeEEEEecChhH-HHHhhhccccccccccccEeEEEEEE
Q 002722 759 AICEHLVEEIRAPTLFATHFHEL-TALAHENANEFNTKQMVGVANYHVSA 807 (888)
Q Consensus 759 ~il~~l~~~~~~~~l~~TH~~~l-~~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (888)
..+..+.++.|.++|++||+.+. ..++|+ +..+.++++..
T Consensus 175 ~~l~~l~~~~g~tii~vTHd~~ea~~l~D~---------i~vl~~G~i~~ 215 (356)
T PRK11650 175 LEIQRLHRRLKTTSLYVTHDQVEAMTLADR---------VVVMNGGVAEQ 215 (356)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhCCE---------EEEEeCCEEEE
Confidence 55566665458999999999764 468887 55566666543
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-17 Score=178.95 Aligned_cols=143 Identities=20% Similarity=0.125 Sum_probs=103.2
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh------------------------hcCcccccccc---cc
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA------------------------QVGSFVPCDRA---SI 696 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a------------------------~~g~~vp~~~~---~~ 696 (888)
.+.++++|++.+|++++|+||||||||||||+++++.... +.-.|+|.... ..
T Consensus 38 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 117 (269)
T cd03294 38 VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHR 117 (269)
T ss_pred eEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCC
Confidence 4567899999999999999999999999999998753210 11124443321 11
Q ss_pred cH---------------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHH
Q 002722 697 SV---------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGF 754 (888)
Q Consensus 697 ~~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~ 754 (888)
++ ++.++.++|..+.+......+|+++++...+++ .+.+|+++|||||++|+|+....
T Consensus 118 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~ 197 (269)
T cd03294 118 TVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRR 197 (269)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHH
Confidence 11 123455567666666667788877777655554 47899999999999999998888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 755 GLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
.+ ..++..+.+..|.++|++||+++.. .++++
T Consensus 198 ~l-~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~ 230 (269)
T cd03294 198 EM-QDELLRLQAELQKTIVFITHDLDEALRLGDR 230 (269)
T ss_pred HH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhcCE
Confidence 88 6666666543489999999998764 56776
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2e-17 Score=176.97 Aligned_cols=143 Identities=17% Similarity=0.163 Sum_probs=103.3
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhh---------------cCcccccccc---cccH-------
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ---------------VGSFVPCDRA---SISV------- 698 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~---------------~g~~vp~~~~---~~~~------- 698 (888)
.+.++++|++.+|++++|+||||||||||||+++++..... .-.|+|.... ..++
T Consensus 15 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~ 94 (255)
T PRK11248 15 PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFG 94 (255)
T ss_pred eeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHHhH
Confidence 56779999999999999999999999999999987642110 0123443321 0111
Q ss_pred --------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHH
Q 002722 699 --------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEH 763 (888)
Q Consensus 699 --------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~il~~ 763 (888)
+..++.++|..+......+.+|+++++...+++ .+.+|+++|||||++|+|+.....+ ..++..
T Consensus 95 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l-~~~L~~ 173 (255)
T PRK11248 95 LQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQM-QTLLLK 173 (255)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH-HHHHHH
Confidence 223456666665556667788877777655554 4789999999999999999888888 666666
Q ss_pred HHhcCCCeEEEEecChhHH-HHhhh
Q 002722 764 LVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 764 l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
+.+..|+++|++||+.+.. .++++
T Consensus 174 ~~~~~g~tviivsH~~~~~~~~~d~ 198 (255)
T PRK11248 174 LWQETGKQVLLITHDIEEAVFMATE 198 (255)
T ss_pred HHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 6443589999999998765 56776
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-17 Score=179.46 Aligned_cols=152 Identities=20% Similarity=0.101 Sum_probs=111.6
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh--------------------hcCcccccccc----cccH-
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA--------------------QVGSFVPCDRA----SISV- 698 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a--------------------~~g~~vp~~~~----~~~~- 698 (888)
.+.++++|++.+|++++|+||||||||||+|+++++.... +.-.|+|+... ..++
T Consensus 19 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 98 (274)
T PRK13647 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVW 98 (274)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHH
Confidence 5778999999999999999999999999999998753210 11124444320 1111
Q ss_pred --------------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHH
Q 002722 699 --------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLA 757 (888)
Q Consensus 699 --------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~ 757 (888)
++.++..+|..+........+|+++++...+.+ .+.+|+++|||||++|+|+.....+
T Consensus 99 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l- 177 (274)
T PRK13647 99 DDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETL- 177 (274)
T ss_pred HHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHH-
Confidence 123445556666666667788888877766555 4789999999999999999988888
Q ss_pred HHHHHHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEE
Q 002722 758 WAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 758 ~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
..++..+++ .|+++|++||+++.+ +++++ ...+.++++.
T Consensus 178 ~~~l~~~~~-~g~tili~tH~~~~~~~~~d~---------i~~l~~G~i~ 217 (274)
T PRK13647 178 MEILDRLHN-QGKTVIVATHDVDLAAEWADQ---------VIVLKEGRVL 217 (274)
T ss_pred HHHHHHHHH-CCCEEEEEeCCHHHHHHhCCE---------EEEEECCEEE
Confidence 667777776 489999999998876 67887 5556666554
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.8e-17 Score=172.44 Aligned_cols=139 Identities=19% Similarity=0.182 Sum_probs=100.0
Q ss_pred CccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhh------------------cCcccccccc---cccH--------
Q 002722 648 DCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ------------------VGSFVPCDRA---SISV-------- 698 (888)
Q Consensus 648 ~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~------------------~g~~vp~~~~---~~~~-------- 698 (888)
+++|++.+|++++|+||||||||||+|+++++..... .-.|+|.+.. ..++
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~ 95 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGL 95 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhccc
Confidence 7889999999999999999999999999987542110 0123343321 0111
Q ss_pred -------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHH
Q 002722 699 -------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHL 764 (888)
Q Consensus 699 -------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l 764 (888)
+..++.++|..+........+|+++++...+++ .+.+|+++|||||++|+|+.....+ ..++..+
T Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l-~~~l~~~ 174 (211)
T cd03298 96 SPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEM-LDLVLDL 174 (211)
T ss_pred ccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH-HHHHHHH
Confidence 223455556655555566778877777666555 4789999999999999999988888 5666666
Q ss_pred HhcCCCeEEEEecChhHH-HHhhh
Q 002722 765 VEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 765 ~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
.++.|+++|++||+++.. +++++
T Consensus 175 ~~~~~~tii~~sH~~~~~~~~~d~ 198 (211)
T cd03298 175 HAETKMTVLMVTHQPEDAKRLAQR 198 (211)
T ss_pred HHhcCCEEEEEecCHHHHHhhhCE
Confidence 543589999999998765 56776
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=99.73 E-value=2e-17 Score=171.35 Aligned_cols=142 Identities=18% Similarity=0.156 Sum_probs=102.1
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh------------------------hcCcccccccc---cc
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA------------------------QVGSFVPCDRA---SI 696 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a------------------------~~g~~vp~~~~---~~ 696 (888)
.+.++++|++.+|++++|+||||||||||+|+++++.... +...|+|+... ..
T Consensus 12 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (206)
T TIGR03608 12 IILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENE 91 (206)
T ss_pred EEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCC
Confidence 4677999999999999999999999999999998753210 01123332211 01
Q ss_pred cH---------------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHH
Q 002722 697 SV---------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGF 754 (888)
Q Consensus 697 ~~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~ 754 (888)
++ +..++.++|..+........+|+++++...+.+ .+.+|+++|||||++|+|+....
T Consensus 92 t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~ 171 (206)
T TIGR03608 92 TVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRD 171 (206)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHH
Confidence 11 123455666665556666778877766655544 57899999999999999998888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 755 GLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
.+ ..++..+.+ .|.++|++||+.++..++++
T Consensus 172 ~l-~~~l~~~~~-~~~tii~~sh~~~~~~~~d~ 202 (206)
T TIGR03608 172 EV-LDLLLELND-EGKTIIIVTHDPEVAKQADR 202 (206)
T ss_pred HH-HHHHHHHHh-cCCEEEEEeCCHHHHhhcCE
Confidence 88 666667765 48999999999987766654
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.9e-17 Score=184.33 Aligned_cols=154 Identities=14% Similarity=0.107 Sum_probs=112.1
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh-----------------------hhcCcccccccc---ccc
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-----------------------AQVGSFVPCDRA---SIS 697 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~-----------------------a~~g~~vp~~~~---~~~ 697 (888)
.+.++++|++.+|++++|+||||||||||+|+++++... .+.-.|+|.... ..+
T Consensus 19 ~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~t 98 (343)
T PRK11153 19 HALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRT 98 (343)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCc
Confidence 467799999999999999999999999999999875311 011124443321 111
Q ss_pred H---------------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHH
Q 002722 698 V---------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFG 755 (888)
Q Consensus 698 ~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~ 755 (888)
+ +..++..+|..+......+.+|+++++...+++ .+.+|+++||||||+|+|+.....
T Consensus 99 v~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~ 178 (343)
T PRK11153 99 VFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRS 178 (343)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 1 123455667766666677888888777666555 478999999999999999988888
Q ss_pred HHHHHHHHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEEE
Q 002722 756 LAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSA 807 (888)
Q Consensus 756 i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (888)
+ +.++..+.++.|.++|++||+++.. +++++ +..+.++++..
T Consensus 179 l-~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~---------v~~l~~G~i~~ 221 (343)
T PRK11153 179 I-LELLKDINRELGLTIVLITHEMDVVKRICDR---------VAVIDAGRLVE 221 (343)
T ss_pred H-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE---------EEEEECCEEEE
Confidence 8 6666777653589999999998765 57877 55566666643
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.2e-17 Score=178.47 Aligned_cols=152 Identities=17% Similarity=0.129 Sum_probs=110.0
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh---------------------hhcCcccccccc----cccH
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM---------------------AQVGSFVPCDRA----SISV 698 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~---------------------a~~g~~vp~~~~----~~~~ 698 (888)
.+.++++|++.+|++++|+||||||||||||+++++... ...-.|+|+... ..++
T Consensus 16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv 95 (274)
T PRK13644 16 PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTV 95 (274)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchH
Confidence 467899999999999999999999999999999875311 011124443321 1111
Q ss_pred ---------------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHH
Q 002722 699 ---------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGL 756 (888)
Q Consensus 699 ---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i 756 (888)
+..++.++|..+........+|+++++...+.+ .+.+|+++|||||++|+|+.....+
T Consensus 96 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l 175 (274)
T PRK13644 96 EEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAV 175 (274)
T ss_pred HHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 123345566666566667788888777766655 4789999999999999999888877
Q ss_pred HHHHHHHHHhcCCCeEEEEecChhHHHHhhhccccccccccccEeEEEEE
Q 002722 757 AWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 757 ~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
+.++..+.+ .|.++|++||+++....+++ ...+.++++.
T Consensus 176 -~~~l~~l~~-~g~til~~tH~~~~~~~~d~---------v~~l~~G~i~ 214 (274)
T PRK13644 176 -LERIKKLHE-KGKTIVYITHNLEELHDADR---------IIVMDRGKIV 214 (274)
T ss_pred -HHHHHHHHh-CCCEEEEEecCHHHHhhCCE---------EEEEECCEEE
Confidence 666777766 58999999999887777776 5555555554
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.7e-17 Score=165.58 Aligned_cols=141 Identities=21% Similarity=0.212 Sum_probs=103.2
Q ss_pred CcccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHH----------------------hhhhcCc-----------
Q 002722 641 WVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI----------------------LMAQVGS----------- 687 (888)
Q Consensus 641 ~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~----------------------~~a~~g~----------- 687 (888)
+++.|..++++++++|+-++|+|||||||||||+.++.-. +...+|.
T Consensus 42 ~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~ 121 (257)
T COG1119 42 NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRV 121 (257)
T ss_pred CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhccc
Confidence 4578999999999999999999999999999999986321 1122221
Q ss_pred ------------------cc-ccccccccHHHHHHHhcCCchhhhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCC
Q 002722 688 ------------------FV-PCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRG 747 (888)
Q Consensus 688 ------------------~v-p~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~slvllDEp~~g 747 (888)
|- +.+.........++..+|+.....+...++|.+++++..|.++ +.+|.|+|||||+.|
T Consensus 122 ~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~G 201 (257)
T COG1119 122 RETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQG 201 (257)
T ss_pred ccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCcccc
Confidence 11 1111112223356777888888888888999888888777765 689999999999999
Q ss_pred CChhhHHHHHHHHHHHHHh-cCCCeEEEEecChhHH
Q 002722 748 TSTYDGFGLAWAICEHLVE-EIRAPTLFATHFHELT 782 (888)
Q Consensus 748 td~~~~~~i~~~il~~l~~-~~~~~~l~~TH~~~l~ 782 (888)
+|......+. ..+..+.. ..+.++|++||+.|.+
T Consensus 202 LDl~~re~ll-~~l~~~~~~~~~~~ll~VtHh~eEi 236 (257)
T COG1119 202 LDLIAREQLL-NRLEELAASPGAPALLFVTHHAEEI 236 (257)
T ss_pred CChHHHHHHH-HHHHHHhcCCCCceEEEEEcchhhc
Confidence 9998887774 44455554 3367799999997643
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.4e-17 Score=173.09 Aligned_cols=142 Identities=18% Similarity=0.168 Sum_probs=103.2
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhh----------------cCcccccccc---cccHH-----
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ----------------VGSFVPCDRA---SISVR----- 699 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~----------------~g~~vp~~~~---~~~~~----- 699 (888)
.+.++++|++.+|++++|+||||+||||||++++++..+.. .-.|+|.... ..++.
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~ 93 (223)
T TIGR03740 14 TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKV 93 (223)
T ss_pred EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHHH
Confidence 46778999999999999999999999999999987642110 1123443321 11222
Q ss_pred ------------HHHHHhcCCchhhhhccchhHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHh
Q 002722 700 ------------DCIFARVGAGDCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVE 766 (888)
Q Consensus 700 ------------d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il-~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~ 766 (888)
..++.++|..+........+|+++++...++ ..+.+|+++|||||++|+|+.....+ +.++..+.+
T Consensus 94 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l-~~~L~~~~~ 172 (223)
T TIGR03740 94 HTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQEL-RELIRSFPE 172 (223)
T ss_pred HHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHH-HHHHHHHHH
Confidence 2345556766666666677887766655444 45789999999999999999888888 666667765
Q ss_pred cCCCeEEEEecChhHH-HHhhh
Q 002722 767 EIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 767 ~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
.|.++|++||+++.. +++++
T Consensus 173 -~~~tiii~sH~~~~~~~~~d~ 193 (223)
T TIGR03740 173 -QGITVILSSHILSEVQQLADH 193 (223)
T ss_pred -CCCEEEEEcCCHHHHHHhcCE
Confidence 588999999998876 57777
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=99.72 E-value=2e-17 Score=174.27 Aligned_cols=150 Identities=17% Similarity=0.127 Sum_probs=105.4
Q ss_pred CCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhh---------c------Ccccccccc---cccH----------
Q 002722 647 NDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ---------V------GSFVPCDRA---SISV---------- 698 (888)
Q Consensus 647 n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~---------~------g~~vp~~~~---~~~~---------- 698 (888)
++++|++.+|++++|+||||||||||+|+++++..... + ..++|+... ..++
T Consensus 2 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~ 81 (230)
T TIGR01184 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDR 81 (230)
T ss_pred CceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHh
Confidence 57888889999999999999999999999987642110 0 123443321 1111
Q ss_pred -------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHH
Q 002722 699 -------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHL 764 (888)
Q Consensus 699 -------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l 764 (888)
+..++.++|..+......+.+|+++++...+.+ .+.+|+++|||||++|+|+.....+ ..++..+
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l-~~~l~~~ 160 (230)
T TIGR01184 82 VLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNL-QEELMQI 160 (230)
T ss_pred cccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHH-HHHHHHH
Confidence 123455556665556666788877777665555 4789999999999999999988888 5555566
Q ss_pred HhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEE
Q 002722 765 VEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 765 ~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
.++.|+++|++||+++.. +++++ +..+.++++.
T Consensus 161 ~~~~~~tii~~sH~~~~~~~~~d~---------v~~l~~G~i~ 194 (230)
T TIGR01184 161 WEEHRVTVLMVTHDVDEALLLSDR---------VVMLTNGPAA 194 (230)
T ss_pred HHhcCCEEEEEeCCHHHHHHhcCE---------EEEEeCCcEe
Confidence 543588999999998764 57777 5555555553
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2e-17 Score=179.23 Aligned_cols=143 Identities=20% Similarity=0.141 Sum_probs=106.3
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh--------------------hcCcccccccc----cccH-
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA--------------------QVGSFVPCDRA----SISV- 698 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a--------------------~~g~~vp~~~~----~~~~- 698 (888)
.+.++++|++.+|++++|+||||||||||+|+++++..+. +.-.|+|.... ..++
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 100 (279)
T PRK13635 21 YALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQ 100 (279)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHH
Confidence 4778999999999999999999999999999998753210 11124443320 1111
Q ss_pred --------------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHH
Q 002722 699 --------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLA 757 (888)
Q Consensus 699 --------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~ 757 (888)
+..++..+|+.+.+......+|+++++...+.+ .+.+|+|+|||||++|+|+.....+
T Consensus 101 enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l- 179 (279)
T PRK13635 101 DDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREV- 179 (279)
T ss_pred HHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH-
Confidence 233455567766677777888888777666555 4789999999999999999988888
Q ss_pred HHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 758 WAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 758 ~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
..++..+.++.|+++|++||+++....+++
T Consensus 180 ~~~l~~l~~~~~~tilivsH~~~~~~~~d~ 209 (279)
T PRK13635 180 LETVRQLKEQKGITVLSITHDLDEAAQADR 209 (279)
T ss_pred HHHHHHHHHcCCCEEEEEecCHHHHHcCCE
Confidence 667777776348999999999887766666
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.3e-17 Score=172.87 Aligned_cols=141 Identities=18% Similarity=0.190 Sum_probs=101.5
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh-------------------hcCcccccccc---cccH---
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA-------------------QVGSFVPCDRA---SISV--- 698 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a-------------------~~g~~vp~~~~---~~~~--- 698 (888)
.+.++++|++.+|++++|+||||||||||+|+++++.... +.-.|+|+... ..++
T Consensus 16 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~ 95 (220)
T cd03263 16 PAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREH 95 (220)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHH
Confidence 4677999999999999999999999999999998753210 00123443321 1111
Q ss_pred ------------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhHHHHHHH
Q 002722 699 ------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYDGFGLAWA 759 (888)
Q Consensus 699 ------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il-~~~~~~slvllDEp~~gtd~~~~~~i~~~ 759 (888)
++.++..++..+......+.+|+++++...+. ..+.+|+++|||||++|+|+.....+ ..
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l-~~ 174 (220)
T cd03263 96 LRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAI-WD 174 (220)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHH-HH
Confidence 12345556666555666677887776665554 45889999999999999999888887 56
Q ss_pred HHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 760 ICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 760 il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
++..+.+ +.++|++||+++.. +++++
T Consensus 175 ~l~~~~~--~~tii~~sH~~~~~~~~~d~ 201 (220)
T cd03263 175 LILEVRK--GRSIILTTHSMDEAEALCDR 201 (220)
T ss_pred HHHHHhc--CCEEEEEcCCHHHHHHhcCE
Confidence 6666664 58999999998876 46776
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.3e-17 Score=173.96 Aligned_cols=143 Identities=17% Similarity=0.161 Sum_probs=99.9
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh---------------------hhcCccccccccc---ccHH
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM---------------------AQVGSFVPCDRAS---ISVR 699 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~---------------------a~~g~~vp~~~~~---~~~~ 699 (888)
.+.++++|++.+|++++|+||||||||||||+++++... .+.-.|+|++... .++.
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 93 (230)
T TIGR03410 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVE 93 (230)
T ss_pred EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHH
Confidence 466799999999999999999999999999999875321 1112355544321 1222
Q ss_pred H------------------HHHHhcC-CchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHH
Q 002722 700 D------------------CIFARVG-AGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWA 759 (888)
Q Consensus 700 d------------------~i~~~~~-~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~ 759 (888)
+ .++..++ ..+......+.+|+++++...+.+ .+.+|+++|||||++|+|+.....+ +.
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l-~~ 172 (230)
T TIGR03410 94 ENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDI-GR 172 (230)
T ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHH-HH
Confidence 2 2223332 233344455667777766655554 4789999999999999999988888 56
Q ss_pred HHHHHHhcCCCeEEEEecChhHHH-Hhhh
Q 002722 760 ICEHLVEEIRAPTLFATHFHELTA-LAHE 787 (888)
Q Consensus 760 il~~l~~~~~~~~l~~TH~~~l~~-~~~~ 787 (888)
++..+.++.++++|++||+++... ++++
T Consensus 173 ~l~~~~~~~~~tii~~sH~~~~~~~~~d~ 201 (230)
T TIGR03410 173 VIRRLRAEGGMAILLVEQYLDFARELADR 201 (230)
T ss_pred HHHHHHHcCCcEEEEEeCCHHHHHHhCCE
Confidence 666666534899999999987664 6776
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.7e-18 Score=175.12 Aligned_cols=143 Identities=21% Similarity=0.149 Sum_probs=106.7
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhh----------------------cCccccccc----cc-
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ----------------------VGSFVPCDR----AS- 695 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~----------------------~g~~vp~~~----~~- 695 (888)
..+.++++|++.+|+.++|+||||||||||+++++++..... +| +|.+.. ..
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG-~VfQnpd~q~~~~ 95 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVG-LVFQNPDDQLFGP 95 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceE-EEEECcccccccC
Confidence 367779999999999999999999999999999987653322 11 111100 00
Q ss_pred --------------------ccHHHHHHHhcCCchhhhhccchhHHHHHHHHHH-HHhCCCCcEEEEeCCCCCCChhhHH
Q 002722 696 --------------------ISVRDCIFARVGAGDCQLRGVSTFMQEMLETASI-LKGATDRSLIIIDELGRGTSTYDGF 754 (888)
Q Consensus 696 --------------------~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~i-l~~~~~~slvllDEp~~gtd~~~~~ 754 (888)
...++..+..+|..+...+....+|++.+|+..| ...|.+|.++||||||+|+||....
T Consensus 96 tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~ 175 (235)
T COG1122 96 TVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRR 175 (235)
T ss_pred cHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHH
Confidence 0112345667788887788888888666555444 4458999999999999999998888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 755 GLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
.+ ..++..+....|.++|++||+++.. .++++
T Consensus 176 ~l-~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~ 208 (235)
T COG1122 176 EL-LELLKKLKEEGGKTIIIVTHDLELVLEYADR 208 (235)
T ss_pred HH-HHHHHHHHhcCCCeEEEEeCcHHHHHhhCCE
Confidence 88 7788888875579999999998776 46776
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.8e-17 Score=174.66 Aligned_cols=143 Identities=17% Similarity=0.148 Sum_probs=102.7
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh---------------------hcCcccccccc---cccH
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA---------------------QVGSFVPCDRA---SISV 698 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a---------------------~~g~~vp~~~~---~~~~ 698 (888)
..+.++++|++.+|++++|+||||||||||||+++++.... +.-.|+|+... ..++
T Consensus 16 ~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 95 (241)
T PRK10895 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSV 95 (241)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcH
Confidence 35778999999999999999999999999999998753210 11124443321 1112
Q ss_pred ----------------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHH
Q 002722 699 ----------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFG 755 (888)
Q Consensus 699 ----------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~ 755 (888)
++.++..+|..+........+|+++++...+.+ .+.+|+++|||||++|+|+.....
T Consensus 96 ~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 175 (241)
T PRK10895 96 YDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVID 175 (241)
T ss_pred HHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 223445555555555556678877776655554 578999999999999999988888
Q ss_pred HHHHHHHHHHhcCCCeEEEEecChh-HHHHhhh
Q 002722 756 LAWAICEHLVEEIRAPTLFATHFHE-LTALAHE 787 (888)
Q Consensus 756 i~~~il~~l~~~~~~~~l~~TH~~~-l~~~~~~ 787 (888)
+ +.++..+.+ .|.++|++||+++ +..++++
T Consensus 176 l-~~~l~~~~~-~g~tiii~sH~~~~~~~~~d~ 206 (241)
T PRK10895 176 I-KRIIEHLRD-SGLGVLITDHNVRETLAVCER 206 (241)
T ss_pred H-HHHHHHHHh-cCCEEEEEEcCHHHHHHhcCE
Confidence 7 667777765 5899999999985 5567776
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.4e-17 Score=178.13 Aligned_cols=153 Identities=15% Similarity=0.095 Sum_probs=108.5
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh----------------------hcCcccccccc----cc
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA----------------------QVGSFVPCDRA----SI 696 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a----------------------~~g~~vp~~~~----~~ 696 (888)
..+.++++|++.+|++++|+||||||||||||+++++.... +...|+|+... ..
T Consensus 14 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 93 (271)
T PRK13638 14 EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYT 93 (271)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccc
Confidence 35788999999999999999999999999999998653110 11124454321 00
Q ss_pred cHH---------------------HHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHH
Q 002722 697 SVR---------------------DCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGF 754 (888)
Q Consensus 697 ~~~---------------------d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~ 754 (888)
.+. +.++.++|..+......+.+|+++++...+.+ .+.+|+++|||||++|+|+....
T Consensus 94 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~ 173 (271)
T PRK13638 94 DIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRT 173 (271)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 111 12344455555455556778877777655555 57899999999999999998888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEE
Q 002722 755 GLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
.+ ..++..+.+ .|.++|++||+.+.. .++++ ...+.++++.
T Consensus 174 ~l-~~~l~~~~~-~g~tii~vtH~~~~~~~~~d~---------i~~l~~G~i~ 215 (271)
T PRK13638 174 QM-IAIIRRIVA-QGNHVIISSHDIDLIYEISDA---------VYVLRQGQIL 215 (271)
T ss_pred HH-HHHHHHHHH-CCCEEEEEeCCHHHHHHhCCE---------EEEEECCEEE
Confidence 88 666677765 589999999998776 57777 5556665554
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.72 E-value=3e-17 Score=172.18 Aligned_cols=142 Identities=14% Similarity=0.139 Sum_probs=99.3
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh---------------------hhcCcccccccc---cccHH
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM---------------------AQVGSFVPCDRA---SISVR 699 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~---------------------a~~g~~vp~~~~---~~~~~ 699 (888)
.+.++++|++.+|++++|+||||||||||||+++++... .+.-.|+|.... ..++.
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 93 (222)
T cd03224 14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVE 93 (222)
T ss_pred eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHH
Confidence 456789999999999999999999999999999865311 011124443321 11121
Q ss_pred H-------------------HHHHhc-CCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHH
Q 002722 700 D-------------------CIFARV-GAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAW 758 (888)
Q Consensus 700 d-------------------~i~~~~-~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~ 758 (888)
+ .++..+ +..+........+|+++++...+.+ .+.+|+++|||||++|+|+.....+ +
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l-~ 172 (222)
T cd03224 94 ENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEI-F 172 (222)
T ss_pred HHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHH-H
Confidence 1 223333 2334444555677777776655554 4789999999999999999888888 6
Q ss_pred HHHHHHHhcCCCeEEEEecChhH-HHHhhh
Q 002722 759 AICEHLVEEIRAPTLFATHFHEL-TALAHE 787 (888)
Q Consensus 759 ~il~~l~~~~~~~~l~~TH~~~l-~~~~~~ 787 (888)
.++..+.+ .|+++|++||+.+. ..++++
T Consensus 173 ~~l~~~~~-~~~tiii~sH~~~~~~~~~d~ 201 (222)
T cd03224 173 EAIRELRD-EGVTILLVEQNARFALEIADR 201 (222)
T ss_pred HHHHHHHH-CCCEEEEEeCCHHHHHHhccE
Confidence 66667765 58999999999876 467776
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.7e-17 Score=171.16 Aligned_cols=140 Identities=21% Similarity=0.288 Sum_probs=100.8
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh-------------------hhcCccccccccc---ccHH--
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-------------------AQVGSFVPCDRAS---ISVR-- 699 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~-------------------a~~g~~vp~~~~~---~~~~-- 699 (888)
.+.++++|++.+| +++|+||||||||||||+++++... .+.-.|+|++... .++.
T Consensus 14 ~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 92 (211)
T cd03264 14 RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREF 92 (211)
T ss_pred EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHH
Confidence 4677999999999 9999999999999999999875321 1111244443211 1111
Q ss_pred -------------------HHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHH
Q 002722 700 -------------------DCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWA 759 (888)
Q Consensus 700 -------------------d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~ 759 (888)
..++.++|..+........+|+++++...+.+ .+.+|+++|||||++|+|+.....+ ..
T Consensus 93 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l-~~ 171 (211)
T cd03264 93 LDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRF-RN 171 (211)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH-HH
Confidence 23445566655555566778877766655554 5889999999999999999888888 66
Q ss_pred HHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 760 ICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 760 il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
+++.+.+ +.++|++||+.+.. +++++
T Consensus 172 ~l~~~~~--~~tii~vsH~~~~~~~~~d~ 198 (211)
T cd03264 172 LLSELGE--DRIVILSTHIVEDVESLCNQ 198 (211)
T ss_pred HHHHHhC--CCEEEEEcCCHHHHHHhCCE
Confidence 7777765 58999999998876 56776
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.1e-17 Score=166.22 Aligned_cols=134 Identities=14% Similarity=0.059 Sum_probs=91.2
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhcCcc-ccccc-ccccHHHHHHHhc------------CCc
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSF-VPCDR-ASISVRDCIFARV------------GAG 709 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~g~~-vp~~~-~~~~~~d~i~~~~------------~~~ 709 (888)
.+.++++|++.+|++++|+||||||||||+|+++++.... -|.. +.... ...+. ..+..++ ...
T Consensus 16 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~g~~~~~~~~-~~~~~~i~~~~q~~~~~~~tv~ 93 (173)
T cd03246 16 PVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT-SGRVRLDGADISQWDP-NELGDHVGYLPQDDELFSGSIA 93 (173)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCC-CCeEEECCEEcccCCH-HHHHhheEEECCCCccccCcHH
Confidence 4667889999999999999999999999999999864322 2211 11100 00000 0011111 111
Q ss_pred hhhhhccchhHHHHHHHHHH-HHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 710 DCQLRGVSTFMQEMLETASI-LKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 710 d~~~~~~s~f~~e~~~~~~i-l~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
+++ +|+++++...+ ...+.+|+++|||||++|+|+.....+ ..++..+.+ .|.++|++||+.+....+++
T Consensus 94 ~~l------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l-~~~l~~~~~-~~~tii~~sh~~~~~~~~d~ 164 (173)
T cd03246 94 ENI------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERAL-NQAIAALKA-AGATRIVIAHRPETLASADR 164 (173)
T ss_pred HHC------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHH-HHHHHHHHh-CCCEEEEEeCCHHHHHhCCE
Confidence 222 66666555444 445889999999999999999988888 566667765 58999999999887766665
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.6e-17 Score=178.57 Aligned_cols=144 Identities=19% Similarity=0.157 Sum_probs=106.9
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh---------------------hhcCcccccccc----ccc
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM---------------------AQVGSFVPCDRA----SIS 697 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~---------------------a~~g~~vp~~~~----~~~ 697 (888)
..+.++++|++.+|++++|+||||||||||+|+++++... .+...|+|.... ...
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 102 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATI 102 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhcccc
Confidence 3578899999999999999999999999999999865321 111234444321 001
Q ss_pred H---------------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHH
Q 002722 698 V---------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFG 755 (888)
Q Consensus 698 ~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~ 755 (888)
+ +..++.++|+.+........+|+++++...+.+ .+.+|+++|||||++|+|+.....
T Consensus 103 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~ 182 (280)
T PRK13633 103 VEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRRE 182 (280)
T ss_pred HHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 1 223455667766667777888888777766555 478999999999999999999988
Q ss_pred HHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 756 LAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 756 i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
+ ..++..+.++.|+++|++||+++....+++
T Consensus 183 l-~~~l~~l~~~~g~tillvtH~~~~~~~~d~ 213 (280)
T PRK13633 183 V-VNTIKELNKKYGITIILITHYMEEAVEADR 213 (280)
T ss_pred H-HHHHHHHHHhcCCEEEEEecChHHHhcCCE
Confidence 8 667777765358999999999887765665
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.4e-17 Score=173.84 Aligned_cols=142 Identities=18% Similarity=0.165 Sum_probs=103.2
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh----------------------hhcCcccccccc---cccH
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----------------------AQVGSFVPCDRA---SISV 698 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~----------------------a~~g~~vp~~~~---~~~~ 698 (888)
.+.++++|++.+|++++|+||||||||||+|+++++... .+.-.|+|.... ..++
T Consensus 15 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 94 (240)
T PRK09493 15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTA 94 (240)
T ss_pred EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcH
Confidence 577899999999999999999999999999999875311 001123443321 1111
Q ss_pred ----------------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHH
Q 002722 699 ----------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFG 755 (888)
Q Consensus 699 ----------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~ 755 (888)
+..++.++|..+.+....+.+|+++++...+++ .+.+|+++|||||++|+|+.....
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~ 174 (240)
T PRK09493 95 LENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHE 174 (240)
T ss_pred HHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 123455666666666667788877776655554 478999999999999999988888
Q ss_pred HHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 756 LAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 756 i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
+ ..++..+.+ .|.++|++||+.+.. .++++
T Consensus 175 l-~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~ 205 (240)
T PRK09493 175 V-LKVMQDLAE-EGMTMVIVTHEIGFAEKVASR 205 (240)
T ss_pred H-HHHHHHHHH-cCCEEEEEeCCHHHHHHhCCE
Confidence 8 556667765 589999999998776 46776
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.8e-17 Score=159.91 Aligned_cols=143 Identities=17% Similarity=0.191 Sum_probs=102.6
Q ss_pred cccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHH----------------------------hhhhcCcccc-cc
Q 002722 642 VNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI----------------------------LMAQVGSFVP-CD 692 (888)
Q Consensus 642 ~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~----------------------------~~a~~g~~vp-~~ 692 (888)
..-+.+++++.+.++.+++|+||+|||||||||++-.+. +..++|.... +.
T Consensus 19 ~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPn 98 (253)
T COG1117 19 DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPN 98 (253)
T ss_pred chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCC
Confidence 356778999999999999999999999999999975331 2233443211 11
Q ss_pred cccccHHHHH---------------------HHhcC----CchhhhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCC
Q 002722 693 RASISVRDCI---------------------FARVG----AGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGR 746 (888)
Q Consensus 693 ~~~~~~~d~i---------------------~~~~~----~~d~~~~~~s~f~~e~~~~~~il~~-~~~~slvllDEp~~ 746 (888)
.+-.+++|.+ +..-. ..|.+......+|++.+|...|.+. |.+|+++||||||+
T Consensus 99 PFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtS 178 (253)
T COG1117 99 PFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTS 178 (253)
T ss_pred CCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCccc
Confidence 1223333332 11111 2344555555688888887776665 88999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHH-Hhhh
Q 002722 747 GTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTA-LAHE 787 (888)
Q Consensus 747 gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~-~~~~ 787 (888)
+|||.....| ..++..|++ ..|++++||++.-+. ..|.
T Consensus 179 ALDPIsT~kI-EeLi~eLk~--~yTIviVTHnmqQAaRvSD~ 217 (253)
T COG1117 179 ALDPISTLKI-EELITELKK--KYTIVIVTHNMQQAARVSDY 217 (253)
T ss_pred ccCchhHHHH-HHHHHHHHh--ccEEEEEeCCHHHHHHHhHh
Confidence 9999999999 888888875 789999999987764 5555
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.2e-17 Score=166.13 Aligned_cols=129 Identities=20% Similarity=0.260 Sum_probs=91.1
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhcCc--------------------ccccccccccHHHHHH
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGS--------------------FVPCDRASISVRDCIF 703 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~g~--------------------~vp~~~~~~~~~d~i~ 703 (888)
.+.++++|++.+|++++|+||||||||||+|+++++.... -|. |+|++. .++
T Consensus 14 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~i~~~~q~~-------~~~ 85 (173)
T cd03230 14 TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD-SGEIKVLGKDIKKEPEEVKRRIGYLPEEP-------SLY 85 (173)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCEEcccchHhhhccEEEEecCC-------ccc
Confidence 4677999999999999999999999999999998864321 221 111111 011
Q ss_pred HhcCCchhhhhccchhHHHHHHH-HHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH
Q 002722 704 ARVGAGDCQLRGVSTFMQEMLET-ASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT 782 (888)
Q Consensus 704 ~~~~~~d~~~~~~s~f~~e~~~~-~~il~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~ 782 (888)
..+...+++. +|+++++. +.+...+.+|+++|+|||++|+|+.....+ ..+++.+.+ .|.++|++||+.+..
T Consensus 86 ~~~tv~~~~~-----LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l-~~~l~~~~~-~g~tiii~th~~~~~ 158 (173)
T cd03230 86 ENLTVRENLK-----LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREF-WELLRELKK-EGKTILLSSHILEEA 158 (173)
T ss_pred cCCcHHHHhh-----cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHH-HHHHHHHHH-CCCEEEEECCCHHHH
Confidence 1112222222 66555555 444455889999999999999999988888 666677776 488999999998765
Q ss_pred H-Hhhh
Q 002722 783 A-LAHE 787 (888)
Q Consensus 783 ~-~~~~ 787 (888)
. ++++
T Consensus 159 ~~~~d~ 164 (173)
T cd03230 159 ERLCDR 164 (173)
T ss_pred HHhCCE
Confidence 4 6665
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.6e-17 Score=177.39 Aligned_cols=143 Identities=19% Similarity=0.155 Sum_probs=105.4
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh--------------------hcCcccccccc----cccH-
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA--------------------QVGSFVPCDRA----SISV- 698 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a--------------------~~g~~vp~~~~----~~~~- 698 (888)
.+.++++|++.+|++++|+||||||||||+|+++++.... +.-.|+|+... ..++
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 100 (279)
T PRK13650 21 YTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVE 100 (279)
T ss_pred eeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHH
Confidence 4678999999999999999999999999999998763211 11124444321 1111
Q ss_pred --------------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHH
Q 002722 699 --------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLA 757 (888)
Q Consensus 699 --------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~ 757 (888)
+..++.++|+.+........+|+++++...+.+ .+.+|+++|||||++|+|+.....+
T Consensus 101 eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l- 179 (279)
T PRK13650 101 DDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLEL- 179 (279)
T ss_pred HHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHH-
Confidence 223455567766666777888877766655544 5889999999999999999888887
Q ss_pred HHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 758 WAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 758 ~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
..++..+.++.|.++|++||+.+....+++
T Consensus 180 ~~~l~~l~~~~g~tilivtH~~~~~~~~dr 209 (279)
T PRK13650 180 IKTIKGIRDDYQMTVISITHDLDEVALSDR 209 (279)
T ss_pred HHHHHHHHHhcCCEEEEEecCHHHHHhCCE
Confidence 667777765348999999999887777776
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.5e-17 Score=183.19 Aligned_cols=154 Identities=17% Similarity=0.122 Sum_probs=113.8
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh------------------------hhcCccccccccc---
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM------------------------AQVGSFVPCDRAS--- 695 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~------------------------a~~g~~vp~~~~~--- 695 (888)
..+.++++|++.+|++++|+||||||||||||+++++... .+.-.|||+...-
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 3566799999999999999999999999999999865311 1112344433211
Q ss_pred ccH---------------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhH
Q 002722 696 ISV---------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDG 753 (888)
Q Consensus 696 ~~~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~ 753 (888)
.++ +..++.++|+.+......+.+|++++|...+++ .+.+|+++|||||++|+||...
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r 165 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIR 165 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 111 224566677777777778889988887766555 4789999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEecChhH-HHHhhhccccccccccccEeEEEEE
Q 002722 754 FGLAWAICEHLVEEIRAPTLFATHFHEL-TALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~~l-~~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
..+ ...+..+.+..|.++||+||+++. ..++++ +..+.++++.
T Consensus 166 ~~l-~~~l~~l~~~~~~Tii~vTHd~~ea~~~~dr---------I~vl~~G~iv 209 (363)
T TIGR01186 166 DSM-QDELKKLQATLQKTIVFITHDLDEAIRIGDR---------IVIMKAGEIV 209 (363)
T ss_pred HHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE---------EEEEeCCEEE
Confidence 988 555556655358999999999875 467887 6666777664
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=4e-17 Score=181.54 Aligned_cols=154 Identities=14% Similarity=0.122 Sum_probs=112.9
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh-------------------hcCccccccccc---ccH--
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA-------------------QVGSFVPCDRAS---ISV-- 698 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a-------------------~~g~~vp~~~~~---~~~-- 698 (888)
..+.++++|++.+|++++|+||||||||||||+|+++.... .+ .+|+++.+- +++
T Consensus 19 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~i-g~vfQ~~~lfp~~tv~e 97 (351)
T PRK11432 19 NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDI-CMVFQSYALFPHMSLGE 97 (351)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCE-EEEeCCcccCCCCCHHH
Confidence 35678999999999999999999999999999998764221 11 233433221 111
Q ss_pred -------------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHH
Q 002722 699 -------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAW 758 (888)
Q Consensus 699 -------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~ 758 (888)
++.++..+|..+...+..+.+|++++|...+.+ .+.+|+++|||||++|+|+.....+ .
T Consensus 98 Ni~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l-~ 176 (351)
T PRK11432 98 NVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSM-R 176 (351)
T ss_pred HHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHH-H
Confidence 223455667766666677888877776655554 5889999999999999999999998 5
Q ss_pred HHHHHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEEE
Q 002722 759 AICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSA 807 (888)
Q Consensus 759 ~il~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (888)
..+..+.++.|.++|++||+.+.+ .++|+ +..+.++++..
T Consensus 177 ~~l~~l~~~~g~tii~vTHd~~e~~~laD~---------i~vm~~G~i~~ 217 (351)
T PRK11432 177 EKIRELQQQFNITSLYVTHDQSEAFAVSDT---------VIVMNKGKIMQ 217 (351)
T ss_pred HHHHHHHHhcCCEEEEEcCCHHHHHHhCCE---------EEEEECCEEEE
Confidence 566666654689999999998765 78888 55666666644
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.6e-17 Score=171.60 Aligned_cols=142 Identities=15% Similarity=0.080 Sum_probs=102.8
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh-----------------------hhcCcccccccc---ccc
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-----------------------AQVGSFVPCDRA---SIS 697 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~-----------------------a~~g~~vp~~~~---~~~ 697 (888)
.+.++++|++.+|++++|+||||||||||+|+++++... .+.-.|+|+... ..+
T Consensus 16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 95 (222)
T PRK10908 16 QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRT 95 (222)
T ss_pred eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCcccccccc
Confidence 567899999999999999999999999999999865311 011124444321 111
Q ss_pred H---------------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHH
Q 002722 698 V---------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFG 755 (888)
Q Consensus 698 ~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~ 755 (888)
+ +..++.+++..+......+.+|+++++...+++ .+.+|+++|||||++|+|+.....
T Consensus 96 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 175 (222)
T PRK10908 96 VYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEG 175 (222)
T ss_pred HHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHH
Confidence 1 123455566665566667788887777665555 478999999999999999988888
Q ss_pred HHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 756 LAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 756 i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
+ ..++..+.+ .+.++|++||+++.. .++++
T Consensus 176 l-~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~ 206 (222)
T PRK10908 176 I-LRLFEEFNR-VGVTVLMATHDIGLISRRSYR 206 (222)
T ss_pred H-HHHHHHHHH-CCCEEEEEeCCHHHHHHhCCE
Confidence 8 556666665 488999999998766 45666
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.6e-17 Score=183.34 Aligned_cols=154 Identities=18% Similarity=0.124 Sum_probs=113.8
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh------------------hcCcccccccccc---c-----
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA------------------QVGSFVPCDRASI---S----- 697 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a------------------~~g~~vp~~~~~~---~----- 697 (888)
.+.++++|++.+|++++|+||||||||||||+|+++.... +.-.|+|+..+-+ +
T Consensus 18 ~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi 97 (353)
T TIGR03265 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNI 97 (353)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHH
Confidence 4677899999999999999999999999999999764211 0112444333211 1
Q ss_pred ----------------HHHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHH
Q 002722 698 ----------------VRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAI 760 (888)
Q Consensus 698 ----------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~i 760 (888)
.++.++..+|..+........+|++++|...+.+ .+.+|+++|||||++|+|+.....+ +..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l-~~~ 176 (353)
T TIGR03265 98 AYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHL-RTE 176 (353)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH-HHH
Confidence 1234566677777777778888887777655554 5889999999999999999999988 555
Q ss_pred HHHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEEE
Q 002722 761 CEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSA 807 (888)
Q Consensus 761 l~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (888)
++.+.++.|.++|++||+++.+ .++++ +..+.++++..
T Consensus 177 L~~l~~~~~~tvi~vTHd~~ea~~l~d~---------i~vl~~G~i~~ 215 (353)
T TIGR03265 177 IRQLQRRLGVTTIMVTHDQEEALSMADR---------IVVMNHGVIEQ 215 (353)
T ss_pred HHHHHHhcCCEEEEEcCCHHHHHHhCCE---------EEEEECCEEEE
Confidence 5666554689999999998764 68887 55666666654
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.3e-17 Score=170.57 Aligned_cols=153 Identities=16% Similarity=0.180 Sum_probs=120.4
Q ss_pred ccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHh------------------------hhhcCccc-----------
Q 002722 645 IPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL------------------------MAQVGSFV----------- 689 (888)
Q Consensus 645 v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~------------------------~a~~g~~v----------- 689 (888)
..++++|++++|++++|+|++|||||||+|++-++.. ..++|...
T Consensus 21 al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV 100 (339)
T COG1135 21 ALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTV 100 (339)
T ss_pred eeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchH
Confidence 4578999999999999999999999999999865421 11233211
Q ss_pred ------ccccccc------cHHHHHHHhcCCchhhhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHH
Q 002722 690 ------PCDRASI------SVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDGFGL 756 (888)
Q Consensus 690 ------p~~~~~~------~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~slvllDEp~~gtd~~~~~~i 756 (888)
|-+-+.. .-+..++..+|+.|......+.+|++.+|...|.++ |++|+++|.||+|+.|||....+|
T Consensus 101 ~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sI 180 (339)
T COG1135 101 FENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSI 180 (339)
T ss_pred HhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHH
Confidence 1111111 123357788999999999999999999888777765 899999999999999999999999
Q ss_pred HHHHHHHHHhcCCCeEEEEecChhHHH-HhhhccccccccccccEeEEEEEE
Q 002722 757 AWAICEHLVEEIRAPTLFATHFHELTA-LAHENANEFNTKQMVGVANYHVSA 807 (888)
Q Consensus 757 ~~~il~~l~~~~~~~~l~~TH~~~l~~-~~~~~~~~~~~~~~~~v~~~~~~~ 807 (888)
..++..+.++.|.|++++||.+++.+ +|++ +..+.++++..
T Consensus 181 -L~LL~~In~~lglTIvlITHEm~Vvk~ic~r---------Vavm~~G~lvE 222 (339)
T COG1135 181 -LELLKDINRELGLTIVLITHEMEVVKRICDR---------VAVLDQGRLVE 222 (339)
T ss_pred -HHHHHHHHHHcCCEEEEEechHHHHHHHhhh---------heEeeCCEEEE
Confidence 77888888878999999999999875 8888 66677776643
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.3e-17 Score=170.56 Aligned_cols=144 Identities=19% Similarity=0.181 Sum_probs=102.7
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh--------------------hhcCccccccccc--ccH--
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRAS--ISV-- 698 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~--------------------a~~g~~vp~~~~~--~~~-- 698 (888)
..+.++++|++.+|++++|+||||||||||+|+++++... .+...|+|....- .++
T Consensus 20 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~e 99 (225)
T PRK10247 20 AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYD 99 (225)
T ss_pred ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHHH
Confidence 3578899999999999999999999999999999876321 1111244433210 011
Q ss_pred -----------------HHHHHHhcCCch-hhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHH
Q 002722 699 -----------------RDCIFARVGAGD-CQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWA 759 (888)
Q Consensus 699 -----------------~d~i~~~~~~~d-~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~ 759 (888)
+..++.++|..+ ........+|+++++...+.+ .+.+|+++|||||++|+|+.....+ ..
T Consensus 100 nl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l-~~ 178 (225)
T PRK10247 100 NLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNV-NE 178 (225)
T ss_pred HHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HH
Confidence 223555666643 445666778877766655444 5789999999999999999888877 55
Q ss_pred HHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 760 ICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 760 il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
++..+.++.|.++|++||+.+....+++
T Consensus 179 ~l~~~~~~~~~tvii~sh~~~~~~~~d~ 206 (225)
T PRK10247 179 IIHRYVREQNIAVLWVTHDKDEINHADK 206 (225)
T ss_pred HHHHHHHhcCCEEEEEECChHHHHhCCE
Confidence 5566654358999999999887766665
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.3e-17 Score=165.05 Aligned_cols=155 Identities=17% Similarity=0.090 Sum_probs=114.8
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhh-----cC----------------cccccccc-----cc-
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ-----VG----------------SFVPCDRA-----SI- 696 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~-----~g----------------~~vp~~~~-----~~- 696 (888)
.+.|+|+|++.+|++++|+||+||||||+.|+++++.-..+ -| .+|+++.. ..
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~t 100 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRT 100 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchh
Confidence 47889999999999999999999999999999988653321 01 11222110 00
Q ss_pred ---------cH---------HHHHHHhcCCchhh-hhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHH
Q 002722 697 ---------SV---------RDCIFARVGAGDCQ-LRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGL 756 (888)
Q Consensus 697 ---------~~---------~d~i~~~~~~~d~~-~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i 756 (888)
.+ ...++..+|+.... .+....||++.+|...|++ .+.+|+++|+|||+++||+.....|
T Consensus 101 v~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~I 180 (252)
T COG1124 101 VGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQI 180 (252)
T ss_pred HHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHH
Confidence 01 23566777776554 3445678877666555554 5789999999999999999888888
Q ss_pred HHHHHHHHHhcCCCeEEEEecChhHHH-HhhhccccccccccccEeEEEEEEE
Q 002722 757 AWAICEHLVEEIRAPTLFATHFHELTA-LAHENANEFNTKQMVGVANYHVSAH 808 (888)
Q Consensus 757 ~~~il~~l~~~~~~~~l~~TH~~~l~~-~~~~~~~~~~~~~~~~v~~~~~~~~ 808 (888)
+.++..+.++.+.+.||+|||..++. +|++ +..+.++++.-.
T Consensus 181 -lnlL~~l~~~~~lt~l~IsHdl~~v~~~cdR---------i~Vm~~G~ivE~ 223 (252)
T COG1124 181 -LNLLLELKKERGLTYLFISHDLALVEHMCDR---------IAVMDNGQIVEI 223 (252)
T ss_pred -HHHHHHHHHhcCceEEEEeCcHHHHHHHhhh---------eeeeeCCeEEEe
Confidence 88888998878999999999998875 8888 666777776543
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.7e-17 Score=175.41 Aligned_cols=143 Identities=20% Similarity=0.217 Sum_probs=104.7
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhh---------cCcccccccc---cc--c------------
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ---------VGSFVPCDRA---SI--S------------ 697 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~---------~g~~vp~~~~---~~--~------------ 697 (888)
.+.++++|++.+|++++|+||||||||||||+++++..... .-.|+|+... .+ .
T Consensus 18 ~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~ 97 (251)
T PRK09544 18 RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTK 97 (251)
T ss_pred eEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhcccccc
Confidence 46779999999999999999999999999999988642211 1124444321 00 1
Q ss_pred --HHHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEE
Q 002722 698 --VRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLF 774 (888)
Q Consensus 698 --~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~ 774 (888)
.+..++.++|..+.+......+|+++++...+++ .+.+|+++|||||++|+|+.....+ +.++..+.+..|.++|+
T Consensus 98 ~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l-~~~L~~~~~~~g~tiii 176 (251)
T PRK09544 98 KEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVAL-YDLIDQLRRELDCAVLM 176 (251)
T ss_pred HHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH-HHHHHHHHHhcCCEEEE
Confidence 1223456677777677777888877776655554 4789999999999999999888888 56666666534899999
Q ss_pred EecChhHH-HHhhh
Q 002722 775 ATHFHELT-ALAHE 787 (888)
Q Consensus 775 ~TH~~~l~-~~~~~ 787 (888)
+||+.+.. +++++
T Consensus 177 vsH~~~~i~~~~d~ 190 (251)
T PRK09544 177 VSHDLHLVMAKTDE 190 (251)
T ss_pred EecCHHHHHHhCCE
Confidence 99998765 56666
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.4e-17 Score=176.74 Aligned_cols=144 Identities=21% Similarity=0.174 Sum_probs=103.0
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh-----------------------hhcCcccccccc---cc
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-----------------------AQVGSFVPCDRA---SI 696 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~-----------------------a~~g~~vp~~~~---~~ 696 (888)
..+.++++|++.+|++++|+||||||||||||+++++... .+.-.|+|.... ..
T Consensus 20 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 99 (269)
T PRK11831 20 RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDM 99 (269)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCC
Confidence 3577899999999999999999999999999999875321 011124443321 11
Q ss_pred cHHH----------------------HHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhH
Q 002722 697 SVRD----------------------CIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDG 753 (888)
Q Consensus 697 ~~~d----------------------~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~ 753 (888)
++.+ .++.++|..+......+.+|+++++...+++ .+.+|+++|||||++|+|+...
T Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~ 179 (269)
T PRK11831 100 NVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITM 179 (269)
T ss_pred CHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence 2222 2344556655555666788888877766555 4789999999999999999888
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 754 FGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
..+ ..++..+.+..|.++|++||+.+.. .++++
T Consensus 180 ~~l-~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~ 213 (269)
T PRK11831 180 GVL-VKLISELNSALGVTCVVVSHDVPEVLSIADH 213 (269)
T ss_pred HHH-HHHHHHHHHhcCcEEEEEecCHHHHHHhhCE
Confidence 887 5566666553489999999997654 56776
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.7e-17 Score=184.63 Aligned_cols=154 Identities=18% Similarity=0.128 Sum_probs=110.8
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh------------------hcCccccccccc---ccH---
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA------------------QVGSFVPCDRAS---ISV--- 698 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a------------------~~g~~vp~~~~~---~~~--- 698 (888)
..+.++++|++.+|++++|+||||||||||||+++++.... +.-.|+|++..- +++
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~en 95 (369)
T PRK11000 16 VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAEN 95 (369)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHH
Confidence 35678999999999999999999999999999998764211 001244443211 111
Q ss_pred ------------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHH
Q 002722 699 ------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWA 759 (888)
Q Consensus 699 ------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~ 759 (888)
+..++.++|..+......+.+|++++|...+.+ .+.+|+++|||||++|+|+.....+ ..
T Consensus 96 i~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l-~~ 174 (369)
T PRK11000 96 MSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM-RI 174 (369)
T ss_pred HHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HH
Confidence 223456667766666677788887777655554 4789999999999999999988888 55
Q ss_pred HHHHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEE
Q 002722 760 ICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 760 il~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
+++.+.++.|.++|++||+.+.+ .++++ +..+.++++.
T Consensus 175 ~L~~l~~~~g~tvI~vTHd~~~~~~~~d~---------i~vl~~G~i~ 213 (369)
T PRK11000 175 EISRLHKRLGRTMIYVTHDQVEAMTLADK---------IVVLDAGRVA 213 (369)
T ss_pred HHHHHHHHhCCEEEEEeCCHHHHHHhCCE---------EEEEECCEEE
Confidence 66666553589999999998654 67877 4555555553
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.8e-17 Score=175.26 Aligned_cols=144 Identities=17% Similarity=0.138 Sum_probs=103.9
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh--------------------hcCccccccccc---cc--
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA--------------------QVGSFVPCDRAS---IS-- 697 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a--------------------~~g~~vp~~~~~---~~-- 697 (888)
..+.++++|++.+|++++|+||||||||||||+++++.... ..-.|+|++... ..
T Consensus 20 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 99 (265)
T PRK10253 20 YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQ 99 (265)
T ss_pred EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHH
Confidence 45788999999999999999999999999999998753110 011233432210 11
Q ss_pred -----------------------HHHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhH
Q 002722 698 -----------------------VRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDG 753 (888)
Q Consensus 698 -----------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~ 753 (888)
.++.++.++|..+......+.+|+++++...+.+ .+.+|+++|||||++|+|+...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~ 179 (265)
T PRK10253 100 ELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQ 179 (265)
T ss_pred HHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence 1223455566666566667788877776655554 4789999999999999999988
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEecChhH-HHHhhh
Q 002722 754 FGLAWAICEHLVEEIRAPTLFATHFHEL-TALAHE 787 (888)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~~l-~~~~~~ 787 (888)
..+ ..++..+.+..|.++|++||+++. .+++++
T Consensus 180 ~~l-~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~ 213 (265)
T PRK10253 180 IDL-LELLSELNREKGYTLAAVLHDLNQACRYASH 213 (265)
T ss_pred HHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 888 556666665348899999999875 467777
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.8e-17 Score=178.53 Aligned_cols=143 Identities=17% Similarity=0.114 Sum_probs=105.5
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhh-----------------------cCcccccccc----cc
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ-----------------------VGSFVPCDRA----SI 696 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~-----------------------~g~~vp~~~~----~~ 696 (888)
.+.++++|++.+|++++|+||||||||||+|+++++....+ ...|+|.... ..
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 100 (282)
T PRK13640 21 PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGA 100 (282)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccC
Confidence 47789999999999999999999999999999988653221 0124443321 11
Q ss_pred cH---------------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHH
Q 002722 697 SV---------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGF 754 (888)
Q Consensus 697 ~~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~ 754 (888)
++ ++.++..+|..+......+.+|+++++...+.+ .+.+|+++|||||++|+|+....
T Consensus 101 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~ 180 (282)
T PRK13640 101 TVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKE 180 (282)
T ss_pred CHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHH
Confidence 11 223455566666666667788877777655554 47899999999999999999888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 755 GLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
.+ ..++..+.++.|.++|++||+++....+++
T Consensus 181 ~l-~~~l~~l~~~~g~tvli~tH~~~~~~~~d~ 212 (282)
T PRK13640 181 QI-LKLIRKLKKKNNLTVISITHDIDEANMADQ 212 (282)
T ss_pred HH-HHHHHHHHHhcCCEEEEEecCHHHHHhCCE
Confidence 88 556666665358999999999988777766
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.4e-17 Score=173.06 Aligned_cols=144 Identities=17% Similarity=0.150 Sum_probs=102.7
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh--------------------hcCcccccccccc--c---
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA--------------------QVGSFVPCDRASI--S--- 697 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a--------------------~~g~~vp~~~~~~--~--- 697 (888)
..+.++++|++.+|++++|+||||||||||+|+++++.... +...|+|.+...+ +
T Consensus 16 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e 95 (241)
T PRK14250 16 KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKD 95 (241)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHH
Confidence 35678999999999999999999999999999998753210 1112344332110 1
Q ss_pred --------------HHHHHHHhcCCc-hhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHH
Q 002722 698 --------------VRDCIFARVGAG-DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAIC 761 (888)
Q Consensus 698 --------------~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~il 761 (888)
.+..++.++|.. +........+|+++++...+++ .+.+|+++|||||++|+|+.....+ ..++
T Consensus 96 ~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l-~~~l 174 (241)
T PRK14250 96 NIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEII-EELI 174 (241)
T ss_pred HHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHHH
Confidence 122345666764 3455666778877766655554 5789999999999999999887777 5666
Q ss_pred HHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 762 EHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 762 ~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
..+.+..|.++|++||+.+.. +++++
T Consensus 175 ~~~~~~~g~tii~~sH~~~~~~~~~d~ 201 (241)
T PRK14250 175 VKLKNKMNLTVIWITHNMEQAKRIGDY 201 (241)
T ss_pred HHHHHhCCCEEEEEeccHHHHHHhCCE
Confidence 666653489999999998765 57776
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.8e-17 Score=169.67 Aligned_cols=153 Identities=21% Similarity=0.146 Sum_probs=106.2
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhh----------------------cCcccccccc---cccH
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ----------------------VGSFVPCDRA---SISV 698 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~----------------------~g~~vp~~~~---~~~~ 698 (888)
...+++++++.+|+.++++|||||||||+||+||++.-... +| ||.+.++ .+++
T Consensus 16 ~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VG-fvFQ~YALF~HmtV 94 (345)
T COG1118 16 GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVG-FVFQHYALFPHMTV 94 (345)
T ss_pred cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhccee-EEEechhhcccchH
Confidence 34558999999999999999999999999999998753221 12 2222221 1111
Q ss_pred HH-----------------------HHHHhcCCchhhhhccchhHHHHHHH-HHHHHhCCCCcEEEEeCCCCCCChhhHH
Q 002722 699 RD-----------------------CIFARVGAGDCQLRGVSTFMQEMLET-ASILKGATDRSLIIIDELGRGTSTYDGF 754 (888)
Q Consensus 699 ~d-----------------------~i~~~~~~~d~~~~~~s~f~~e~~~~-~~il~~~~~~slvllDEp~~gtd~~~~~ 754 (888)
.+ .++.-+.+.+-.......+|++.+|. +.+...|.+|+++|||||++++|..-..
T Consensus 95 a~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~ 174 (345)
T COG1118 95 ADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRK 174 (345)
T ss_pred HhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHH
Confidence 11 22333333333344445666666655 4444558899999999999999999888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEEE
Q 002722 755 GLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSA 807 (888)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (888)
.+ ..-+..+.++.|++++|+|||.+.+ +++++ +..+.++.+..
T Consensus 175 ~l-r~wLr~~~~~~~~ttvfVTHD~eea~~ladr---------vvvl~~G~Ieq 218 (345)
T COG1118 175 EL-RRWLRKLHDRLGVTTVFVTHDQEEALELADR---------VVVLNQGRIEQ 218 (345)
T ss_pred HH-HHHHHHHHHhhCceEEEEeCCHHHHHhhcce---------EEEecCCeeee
Confidence 88 5566667776799999999998766 68888 66667776644
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.9e-17 Score=171.49 Aligned_cols=141 Identities=15% Similarity=0.071 Sum_probs=98.8
Q ss_pred cCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh---hcC-------------------cccccccc-----cccH
Q 002722 646 PNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA---QVG-------------------SFVPCDRA-----SISV 698 (888)
Q Consensus 646 ~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a---~~g-------------------~~vp~~~~-----~~~~ 698 (888)
.++++|++.+|++++|+||||||||||+|+++++.... .-| .|+|.+.. ...+
T Consensus 2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~ 81 (230)
T TIGR02770 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTM 81 (230)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCH
Confidence 56889999999999999999999999999999875430 111 23343321 0111
Q ss_pred ---------------------HHHHHHhcCCc---hhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhH
Q 002722 699 ---------------------RDCIFARVGAG---DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDG 753 (888)
Q Consensus 699 ---------------------~d~i~~~~~~~---d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~ 753 (888)
+..++.+++.. +......+.+|+++++...+.+ .+.+|+++|||||++|+|+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~ 161 (230)
T TIGR02770 82 GNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQ 161 (230)
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHH
Confidence 11234444554 3345556678877766655544 4789999999999999999888
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 754 FGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
..+ ..++..+.++.|.++|++||+.+.. .++++
T Consensus 162 ~~l-~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~ 195 (230)
T TIGR02770 162 ARV-LKLLRELRQLFGTGILLITHDLGVVARIADE 195 (230)
T ss_pred HHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 887 5566666553488999999998765 57776
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.4e-17 Score=172.53 Aligned_cols=143 Identities=21% Similarity=0.187 Sum_probs=101.8
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh--------------------hcCccccccccc---ccH--
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA--------------------QVGSFVPCDRAS---ISV-- 698 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a--------------------~~g~~vp~~~~~---~~~-- 698 (888)
.+.++++|++.+|++++|+||||||||||||+++++.... ..-.|+|..... .++
T Consensus 15 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 94 (242)
T cd03295 15 KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEE 94 (242)
T ss_pred eEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHH
Confidence 4667899999999999999999999999999998753110 011244443211 111
Q ss_pred -------------------HHHHHHhcCCch--hhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHH
Q 002722 699 -------------------RDCIFARVGAGD--CQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGL 756 (888)
Q Consensus 699 -------------------~d~i~~~~~~~d--~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i 756 (888)
+..++.++|... ......+.+|+++++...+++ .+.+|+++|||||++|+|+.....+
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l 174 (242)
T cd03295 95 NIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQL 174 (242)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHH
Confidence 123455566653 455566778877777655554 4789999999999999999888777
Q ss_pred HHHHHHHHHhcCCCeEEEEecChhH-HHHhhh
Q 002722 757 AWAICEHLVEEIRAPTLFATHFHEL-TALAHE 787 (888)
Q Consensus 757 ~~~il~~l~~~~~~~~l~~TH~~~l-~~~~~~ 787 (888)
..++..+.+..|+++|++||+.+. ..++++
T Consensus 175 -~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~ 205 (242)
T cd03295 175 -QEEFKRLQQELGKTIVFVTHDIDEAFRLADR 205 (242)
T ss_pred -HHHHHHHHHHcCCEEEEEecCHHHHHHhCCE
Confidence 666666665348999999999875 457776
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.5e-17 Score=173.47 Aligned_cols=143 Identities=15% Similarity=0.149 Sum_probs=99.1
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh---------------------hhcCcccccccc---cccH
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM---------------------AQVGSFVPCDRA---SISV 698 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~---------------------a~~g~~vp~~~~---~~~~ 698 (888)
..+.++++|++.+|++++|+||||||||||||+++++... .+.-.|+|+... ..++
T Consensus 18 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 97 (237)
T PRK11614 18 IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTV 97 (237)
T ss_pred ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcH
Confidence 3577899999999999999999999999999999865311 111124443321 1122
Q ss_pred HHH-------------------HHHhc-CCchhhhhccchhHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhHHHHH
Q 002722 699 RDC-------------------IFARV-GAGDCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYDGFGLA 757 (888)
Q Consensus 699 ~d~-------------------i~~~~-~~~d~~~~~~s~f~~e~~~~~~il-~~~~~~slvllDEp~~gtd~~~~~~i~ 757 (888)
.+. ++..+ +..+......+.+|+++++...+. ..+.+|+++|||||++|+|+.....+
T Consensus 98 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l- 176 (237)
T PRK11614 98 EENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQI- 176 (237)
T ss_pred HHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHH-
Confidence 222 22233 233333445566776666655544 45789999999999999999888777
Q ss_pred HHHHHHHHhcCCCeEEEEecChh-HHHHhhh
Q 002722 758 WAICEHLVEEIRAPTLFATHFHE-LTALAHE 787 (888)
Q Consensus 758 ~~il~~l~~~~~~~~l~~TH~~~-l~~~~~~ 787 (888)
..++..+.+ .|.++|++||+.+ +.+++++
T Consensus 177 ~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~ 206 (237)
T PRK11614 177 FDTIEQLRE-QGMTIFLVEQNANQALKLADR 206 (237)
T ss_pred HHHHHHHHH-CCCEEEEEeCcHHHHHhhCCE
Confidence 666777766 5899999999976 5567776
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.8e-17 Score=175.04 Aligned_cols=144 Identities=15% Similarity=0.095 Sum_probs=104.1
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh----------------------------hcCcccccccc
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA----------------------------QVGSFVPCDRA 694 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a----------------------------~~g~~vp~~~~ 694 (888)
..+.++++|++.+|++++|+||||||||||+|+++++.-.. +.-.|+|+...
T Consensus 17 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (262)
T PRK09984 17 HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFN 96 (262)
T ss_pred eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccc
Confidence 35678999999999999999999999999999998764321 00124443321
Q ss_pred ---cccH-----------------------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEE
Q 002722 695 ---SISV-----------------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIII 741 (888)
Q Consensus 695 ---~~~~-----------------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvll 741 (888)
..++ +..++.++|..+........+|+++++...+.+ .+.+|+++||
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 176 (262)
T PRK09984 97 LVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILA 176 (262)
T ss_pred cccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEEe
Confidence 0111 123445566665566667778877766655554 5789999999
Q ss_pred eCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhH-HHHhhh
Q 002722 742 DELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHEL-TALAHE 787 (888)
Q Consensus 742 DEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l-~~~~~~ 787 (888)
|||++|+|+.....+ ..+++.+.++.|.++|++||+.+. ..++++
T Consensus 177 DEPt~~LD~~~~~~l-~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~ 222 (262)
T PRK09984 177 DEPIASLDPESARIV-MDTLRDINQNDGITVVVTLHQVDYALRYCER 222 (262)
T ss_pred cCccccCCHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 999999999988888 666666665358999999999875 467776
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.5e-17 Score=178.26 Aligned_cols=152 Identities=14% Similarity=0.097 Sum_probs=110.7
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh----------------------------------------
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA---------------------------------------- 683 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a---------------------------------------- 683 (888)
.+.++++|++.+|++++|+||||||||||+|+++++....
T Consensus 21 ~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (305)
T PRK13651 21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKI 100 (305)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchH
Confidence 4778999999999999999999999999999998763210
Q ss_pred ----hcCccccccc----ccccH---------------------HHHHHHhcCCc-hhhhhccchhHHHHHHHHHHHH-h
Q 002722 684 ----QVGSFVPCDR----ASISV---------------------RDCIFARVGAG-DCQLRGVSTFMQEMLETASILK-G 732 (888)
Q Consensus 684 ----~~g~~vp~~~----~~~~~---------------------~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~-~ 732 (888)
+.-.|+|+.. ....+ +..++..+|.. +........+|+++++...+.+ .
T Consensus 101 ~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL 180 (305)
T PRK13651 101 KEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGIL 180 (305)
T ss_pred HHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 0012455431 10011 23345666774 5566677888887777655555 4
Q ss_pred CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhH-HHHhhhccccccccccccEeEEEEE
Q 002722 733 ATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHEL-TALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 733 ~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l-~~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
+.+|+++|||||++|+|+.....+ ..++..+.+ .|.++|++||+++. .+++++ +-.+.++.+.
T Consensus 181 ~~~P~lLlLDEPt~~LD~~~~~~l-~~~l~~l~~-~g~tiiivtHd~~~~~~~adr---------v~vl~~G~i~ 244 (305)
T PRK13651 181 AMEPDFLVFDEPTAGLDPQGVKEI-LEIFDNLNK-QGKTIILVTHDLDNVLEWTKR---------TIFFKDGKII 244 (305)
T ss_pred HhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHH-CCCEEEEEeeCHHHHHHhCCE---------EEEEECCEEE
Confidence 789999999999999999877777 677777776 59999999999875 467887 5555555543
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.2e-17 Score=176.86 Aligned_cols=152 Identities=13% Similarity=0.084 Sum_probs=109.6
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh------------------------hhcCccccccc----cc
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM------------------------AQVGSFVPCDR----AS 695 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~------------------------a~~g~~vp~~~----~~ 695 (888)
.+.++++|++.+|++++|+||||||||||||+++++... .+.-.|+|... ..
T Consensus 21 ~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 100 (287)
T PRK13641 21 KGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFE 100 (287)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhcc
Confidence 477899999999999999999999999999999865311 01112444432 01
Q ss_pred ccHH---------------------HHHHHhcCCc-hhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhh
Q 002722 696 ISVR---------------------DCIFARVGAG-DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYD 752 (888)
Q Consensus 696 ~~~~---------------------d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~ 752 (888)
.++. ..++..+|.. +......+.+|+++++...+.+ .+.+|+++|||||++|+|+..
T Consensus 101 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~ 180 (287)
T PRK13641 101 NTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEG 180 (287)
T ss_pred chHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHH
Confidence 1221 2334556664 4456667788888877766555 478999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEE
Q 002722 753 GFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 753 ~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
...+ ..++..+.+ .|.++|++||+++.+ .++++ +..+.++++.
T Consensus 181 ~~~l-~~~l~~l~~-~g~tvlivsH~~~~~~~~~d~---------v~~l~~G~i~ 224 (287)
T PRK13641 181 RKEM-MQLFKDYQK-AGHTVILVTHNMDDVAEYADD---------VLVLEHGKLI 224 (287)
T ss_pred HHHH-HHHHHHHHh-CCCEEEEEeCCHHHHHHhCCE---------EEEEECCEEE
Confidence 8887 667777766 589999999998865 57777 5555555543
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.1e-17 Score=173.83 Aligned_cols=143 Identities=15% Similarity=0.083 Sum_probs=101.6
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh---------------------------------hhcCcccc
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM---------------------------------AQVGSFVP 690 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~---------------------------------a~~g~~vp 690 (888)
.+.++++|++.+|++++|+||||||||||+|+++++... .+.-.|+|
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 93 (252)
T TIGR03005 14 TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVF 93 (252)
T ss_pred eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEe
Confidence 467799999999999999999999999999999875321 01112333
Q ss_pred cccc---cccH----------------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCC
Q 002722 691 CDRA---SISV----------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDEL 744 (888)
Q Consensus 691 ~~~~---~~~~----------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp 744 (888)
+... ..++ +..++.++|..+........+|+++++...+.+ .+.+|+++|||||
T Consensus 94 q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 173 (252)
T TIGR03005 94 QSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEV 173 (252)
T ss_pred cCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 3221 1111 123445566655555666778877766655544 5789999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 745 GRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 745 ~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
++|+|+.....+ ..++..+.++.|.++|++||+++.. .++++
T Consensus 174 ~~~LD~~~~~~l-~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~ 216 (252)
T TIGR03005 174 TSALDPELVGEV-LNVIRRLASEHDLTMLLVTHEMGFAREFADR 216 (252)
T ss_pred cccCCHHHHHHH-HHHHHHHHHhcCcEEEEEeCCHHHHHHhcCE
Confidence 999999888887 5556666553489999999998765 57776
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.6e-17 Score=182.53 Aligned_cols=155 Identities=19% Similarity=0.173 Sum_probs=113.8
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhh-cC-------------------ccccccccc---ccH-
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ-VG-------------------SFVPCDRAS---ISV- 698 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~-~g-------------------~~vp~~~~~---~~~- 698 (888)
..+.++++|++.+|++++|+||||||||||||+++++..... .| .||++..+- +++
T Consensus 18 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~ 97 (362)
T TIGR03258 18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVE 97 (362)
T ss_pred eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHH
Confidence 357789999999999999999999999999999998653322 01 133333211 111
Q ss_pred --------------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHH
Q 002722 699 --------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLA 757 (888)
Q Consensus 699 --------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~ 757 (888)
++.++..+|+.+...+....+|++++|...+.+ .+.+|+++|||||++|+|+.....+
T Consensus 98 enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l- 176 (362)
T TIGR03258 98 DNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANM- 176 (362)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHH-
Confidence 234566677777777777888887777655554 5889999999999999999998888
Q ss_pred HHHHHHHHhcC-CCeEEEEecChhHH-HHhhhccccccccccccEeEEEEEE
Q 002722 758 WAICEHLVEEI-RAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSA 807 (888)
Q Consensus 758 ~~il~~l~~~~-~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (888)
+..+..+.++. |.++|++||+++.+ .++++ +..+.++++..
T Consensus 177 ~~~l~~l~~~~~g~til~vTHd~~ea~~l~dr---------i~vl~~G~i~~ 219 (362)
T TIGR03258 177 REEIAALHEELPELTILCVTHDQDDALTLADK---------AGIMKDGRLAA 219 (362)
T ss_pred HHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCE---------EEEEECCEEEE
Confidence 56666676644 79999999998765 67887 55566666643
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.1e-17 Score=172.30 Aligned_cols=152 Identities=20% Similarity=0.158 Sum_probs=104.1
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHH-hhh---------------------hc-Cccccccccc---cc
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI-LMA---------------------QV-GSFVPCDRAS---IS 697 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~-~~a---------------------~~-g~~vp~~~~~---~~ 697 (888)
.+.++++|++.+|++++|+||||||||||||+++++. ... .. -.|+|+.... .+
T Consensus 14 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 93 (243)
T TIGR01978 14 EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVS 93 (243)
T ss_pred EEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcC
Confidence 4667999999999999999999999999999998862 100 11 1244433211 00
Q ss_pred H----------------------------HHHHHHhcCCch-hhhhccc-hhHHHHHHHHHHHH-hCCCCcEEEEeCCCC
Q 002722 698 V----------------------------RDCIFARVGAGD-CQLRGVS-TFMQEMLETASILK-GATDRSLIIIDELGR 746 (888)
Q Consensus 698 ~----------------------------~d~i~~~~~~~d-~~~~~~s-~f~~e~~~~~~il~-~~~~~slvllDEp~~ 746 (888)
. +..++.++|..+ ....... .+|+++++...+++ .+.+|+++|||||++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 173 (243)
T TIGR01978 94 NLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDS 173 (243)
T ss_pred HHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcc
Confidence 1 122344455543 2333444 48877766655544 578999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHH-H-hhhccccccccccccEeEEEEE
Q 002722 747 GTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTA-L-AHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 747 gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~-~-~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
|+|+.....+ ..++..+.+ .|.++|++||+.+... + +++ +..+.++++.
T Consensus 174 ~LD~~~~~~l-~~~l~~~~~-~~~tvi~vsH~~~~~~~~~~d~---------i~~l~~G~i~ 224 (243)
T TIGR01978 174 GLDIDALKIV-AEGINRLRE-PDRSFLIITHYQRLLNYIKPDY---------VHVLLDGRIV 224 (243)
T ss_pred cCCHHHHHHH-HHHHHHHHH-CCcEEEEEEecHHHHHhhcCCe---------EEEEeCCEEE
Confidence 9999988888 566666765 5899999999988775 4 566 4445555553
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6e-17 Score=155.61 Aligned_cols=151 Identities=19% Similarity=0.167 Sum_probs=113.0
Q ss_pred CccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhcCccc---------ccccc------------c-----------
Q 002722 648 DCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFV---------PCDRA------------S----------- 695 (888)
Q Consensus 648 ~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~g~~v---------p~~~~------------~----------- 695 (888)
.+++.+..|++++|+||+||||||||+.||+...+++....+ |++.. .
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl 96 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGL 96 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccC
Confidence 455566889999999999999999999999876655432221 22211 0
Q ss_pred ----------ccHHHHHHHhcCCchhhhhccchhHHHHHHH-HHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHH
Q 002722 696 ----------ISVRDCIFARVGAGDCQLRGVSTFMQEMLET-ASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHL 764 (888)
Q Consensus 696 ----------~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~-~~il~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l 764 (888)
-..++.+..++|..+...+-..++|++.+|. +.+.+...+++++|||||++.+||.-+..+ .+++..+
T Consensus 97 ~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eM-l~Lv~~l 175 (231)
T COG3840 97 SPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEM-LALVSQL 175 (231)
T ss_pred CcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHH-HHHHHHH
Confidence 0113456778888877777778888766555 445556789999999999999999888888 6777888
Q ss_pred HhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEEEE
Q 002722 765 VEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSAH 808 (888)
Q Consensus 765 ~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~~~ 808 (888)
+.+.+.|++++||.++-+ .++++ ...+.++++.+.
T Consensus 176 ~~E~~~TllmVTH~~~Da~~ia~~---------~~fl~~Gri~~~ 211 (231)
T COG3840 176 CDERKMTLLMVTHHPEDAARIADR---------VVFLDNGRIAAQ 211 (231)
T ss_pred HHhhCCEEEEEeCCHHHHHHhhhc---------eEEEeCCEEEee
Confidence 877899999999997654 67777 666777777664
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.6e-17 Score=167.78 Aligned_cols=142 Identities=20% Similarity=0.137 Sum_probs=95.0
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHH-hhhhcCcc-c---cccc--------ccccHH---HHHHHhcC
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI-LMAQVGSF-V---PCDR--------ASISVR---DCIFARVG 707 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~-~~a~~g~~-v---p~~~--------~~~~~~---d~i~~~~~ 707 (888)
.+.++++|++.+|++++|+||||||||||+|+++++. ....-|.. + +... ..++++ ..++..+.
T Consensus 14 ~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 93 (200)
T cd03217 14 EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVK 93 (200)
T ss_pred EeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCcc
Confidence 4677999999999999999999999999999998863 11222211 0 0000 001100 01111112
Q ss_pred CchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHH--H
Q 002722 708 AGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTA--L 784 (888)
Q Consensus 708 ~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~--~ 784 (888)
..+.+......+|+++++...+.+ .+.+|+++|||||++|+|+.....+ +.++..+.+ .++++|++||+++... +
T Consensus 94 ~~~~l~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l-~~~L~~~~~-~~~tiii~sh~~~~~~~~~ 171 (200)
T cd03217 94 NADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLV-AEVINKLRE-EGKSVLIITHYQRLLDYIK 171 (200)
T ss_pred HHHHHhhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH-HHHHHHHHH-CCCEEEEEecCHHHHHHhh
Confidence 222222222467766666555444 5789999999999999999888888 666667765 4899999999998876 6
Q ss_pred hhh
Q 002722 785 AHE 787 (888)
Q Consensus 785 ~~~ 787 (888)
+++
T Consensus 172 ~d~ 174 (200)
T cd03217 172 PDR 174 (200)
T ss_pred CCE
Confidence 776
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.3e-17 Score=172.09 Aligned_cols=141 Identities=17% Similarity=0.138 Sum_probs=101.2
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh---------------------hcCcccccccc---cccH-
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA---------------------QVGSFVPCDRA---SISV- 698 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a---------------------~~g~~vp~~~~---~~~~- 698 (888)
.+.++++|++.+|++++|+||||||||||||+++++.... +.-.|+|.... ..++
T Consensus 16 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 95 (242)
T TIGR03411 16 KALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVF 95 (242)
T ss_pred EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHH
Confidence 5778999999999999999999999999999998753110 00113332211 0111
Q ss_pred ----------------------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCC
Q 002722 699 ----------------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTS 749 (888)
Q Consensus 699 ----------------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd 749 (888)
+..++.++|..+......+.+|+++++...+.+ .+.+|+++|||||++|+|
T Consensus 96 ~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD 175 (242)
T TIGR03411 96 ENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMT 175 (242)
T ss_pred HHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCC
Confidence 223455566665556666778877766655554 478999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 750 TYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 750 ~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
+.....+ +.++..+.+ +.++|++||+++.. +++++
T Consensus 176 ~~~~~~l-~~~l~~~~~--~~tii~~sH~~~~~~~~~d~ 211 (242)
T TIGR03411 176 DEETEKT-AELLKSLAG--KHSVVVVEHDMEFVRSIADK 211 (242)
T ss_pred HHHHHHH-HHHHHHHhc--CCEEEEEECCHHHHHHhCCE
Confidence 9888888 666666654 68999999998776 46776
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.4e-17 Score=170.27 Aligned_cols=151 Identities=14% Similarity=0.061 Sum_probs=106.8
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHH-----hhhh----------------------cCcccccccc--
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI-----LMAQ----------------------VGSFVPCDRA-- 694 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~-----~~a~----------------------~g~~vp~~~~-- 694 (888)
.+.++++|++.+|++++|+||||||||||+|+++++. .... .-.|+|+...
T Consensus 14 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 93 (227)
T cd03260 14 HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF 93 (227)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhc
Confidence 5677999999999999999999999999999999876 2110 0124443321
Q ss_pred cccHH----------------------HHHHHhcCCchhhhhc--cchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCC
Q 002722 695 SISVR----------------------DCIFARVGAGDCQLRG--VSTFMQEMLETASILK-GATDRSLIIIDELGRGTS 749 (888)
Q Consensus 695 ~~~~~----------------------d~i~~~~~~~d~~~~~--~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd 749 (888)
..++. ..++..+|..+..... ...+|+++++...+++ .+.+|+++|||||++|+|
T Consensus 94 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD 173 (227)
T cd03260 94 PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALD 173 (227)
T ss_pred cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 01111 2234555665544444 3788888777766555 478999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEE
Q 002722 750 TYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 750 ~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
+.....+ +.++..+.+ . .++|++||+.+.. +++++ +..+.++++.
T Consensus 174 ~~~~~~l-~~~l~~~~~-~-~tii~~sH~~~~~~~~~d~---------i~~l~~G~i~ 219 (227)
T cd03260 174 PISTAKI-EELIAELKK-E-YTIVIVTHNMQQAARVADR---------TAFLLNGRLV 219 (227)
T ss_pred HHHHHHH-HHHHHHHhh-C-cEEEEEeccHHHHHHhCCE---------EEEEeCCEEE
Confidence 9888888 666677766 3 8899999998764 57776 5555555543
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.1e-17 Score=175.53 Aligned_cols=144 Identities=17% Similarity=0.100 Sum_probs=104.1
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh--------------------hhcCcccccccc----cccH
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRA----SISV 698 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~--------------------a~~g~~vp~~~~----~~~~ 698 (888)
..+.++++|++.+|++++|+||||||||||+|+++++... .+.-.|+|.... ..++
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv 101 (271)
T PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATV 101 (271)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccH
Confidence 3578899999999999999999999999999999876321 011134554321 1122
Q ss_pred H---------------------HHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHH
Q 002722 699 R---------------------DCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGL 756 (888)
Q Consensus 699 ~---------------------d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i 756 (888)
. ..++.++|..+.+......+|+++++...+.+ .+.+|+++|||||++|+|+.....+
T Consensus 102 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l 181 (271)
T PRK13632 102 EDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREI 181 (271)
T ss_pred HHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 2 22345566666666667788877777655554 4789999999999999999888877
Q ss_pred HHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 757 AWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 757 ~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
..++..+.++.+.++|++||+.+....+++
T Consensus 182 -~~~l~~~~~~~~~tiii~sH~~~~~~~~d~ 211 (271)
T PRK13632 182 -KKIMVDLRKTRKKTLISITHDMDEAILADK 211 (271)
T ss_pred -HHHHHHHHHhcCcEEEEEEechhHHhhCCE
Confidence 566666665335899999999887766666
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.5e-17 Score=170.33 Aligned_cols=143 Identities=20% Similarity=0.145 Sum_probs=100.0
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh-----------------------hcCcccccccc-----c
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA-----------------------QVGSFVPCDRA-----S 695 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a-----------------------~~g~~vp~~~~-----~ 695 (888)
.+.++++|++.+|++++|+|||||||||||++++++.... ..-.|+|.... .
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 98 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPR 98 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCc
Confidence 4678999999999999999999999999999998653110 01123443320 1
Q ss_pred ccHHH-----------------------HHHHhcCCc-hhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCCh
Q 002722 696 ISVRD-----------------------CIFARVGAG-DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTST 750 (888)
Q Consensus 696 ~~~~d-----------------------~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~ 750 (888)
.++.+ .++..++.. +........+|+++++...+++ .+.+|+++|||||++|+|+
T Consensus 99 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~ 178 (228)
T cd03257 99 MTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDV 178 (228)
T ss_pred CCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCH
Confidence 11111 233445553 3344555677877776655554 5789999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCeEEEEecChhHHH-Hhhh
Q 002722 751 YDGFGLAWAICEHLVEEIRAPTLFATHFHELTA-LAHE 787 (888)
Q Consensus 751 ~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~-~~~~ 787 (888)
.....+ ..++..+.++.|.++|++||+.+... ++++
T Consensus 179 ~~~~~l-~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~ 215 (228)
T cd03257 179 SVQAQI-LDLLKKLQEELGLTLLFITHDLGVVAKIADR 215 (228)
T ss_pred HHHHHH-HHHHHHHHHHcCCEEEEEeCCHHHHHHhcCe
Confidence 888887 55666665524899999999988764 6776
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.3e-17 Score=174.12 Aligned_cols=144 Identities=17% Similarity=0.192 Sum_probs=102.8
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh--------------------hcCcccccccc---cccHH
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA--------------------QVGSFVPCDRA---SISVR 699 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a--------------------~~g~~vp~~~~---~~~~~ 699 (888)
..+.++++|++.+|++++|+||||||||||||+++++.... +.-.|+|.... ..++.
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 94 (258)
T PRK13548 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVE 94 (258)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHH
Confidence 35778999999999999999999999999999998753210 11124443321 11121
Q ss_pred ---------------------HHHHHhcCCchhhhhccchhHHHHHHHHHHHHh-C------CCCcEEEEeCCCCCCChh
Q 002722 700 ---------------------DCIFARVGAGDCQLRGVSTFMQEMLETASILKG-A------TDRSLIIIDELGRGTSTY 751 (888)
Q Consensus 700 ---------------------d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~------~~~slvllDEp~~gtd~~ 751 (888)
..++..+|..+........+|+++++...+.+. + .+|+++|||||++|+|+.
T Consensus 95 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~ 174 (258)
T PRK13548 95 EVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLA 174 (258)
T ss_pred HHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHH
Confidence 234455566555566667788887777666665 4 389999999999999998
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 752 DGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 752 ~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
....+ ..++..+.+..|.++|++||+++.. .++++
T Consensus 175 ~~~~l-~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~ 210 (258)
T PRK13548 175 HQHHV-LRLARQLAHERGLAVIVVLHDLNLAARYADR 210 (258)
T ss_pred HHHHH-HHHHHHHHHhcCCEEEEEECCHHHHHHhcCE
Confidence 88888 5556666522588999999998766 47776
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.3e-17 Score=178.55 Aligned_cols=142 Identities=18% Similarity=0.175 Sum_probs=107.8
Q ss_pred ccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhc-----C-------------cccccccc---cccHHH---
Q 002722 645 IPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQV-----G-------------SFVPCDRA---SISVRD--- 700 (888)
Q Consensus 645 v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~-----g-------------~~vp~~~~---~~~~~d--- 700 (888)
+.++++|++.+|++++|+|||||||||+||+||++.-.... | .+|++..+ .+++++
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Nia 97 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIA 97 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhh
Confidence 78899999999999999999999999999999987532210 0 12333332 122222
Q ss_pred ------------------HHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHH
Q 002722 701 ------------------CIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAIC 761 (888)
Q Consensus 701 ------------------~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~il 761 (888)
.+...+++.+.+.+..+.+|++.+|..++.+ .+.+|+++|||||.+.+|..-...+ ..-+
T Consensus 98 f~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~m-r~ei 176 (338)
T COG3839 98 FGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLM-RSEI 176 (338)
T ss_pred hhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHH-HHHH
Confidence 3345567888888888999988776655555 4789999999999999999998888 4455
Q ss_pred HHHHhcCCCeEEEEecCh-hHHHHhhh
Q 002722 762 EHLVEEIRAPTLFATHFH-ELTALAHE 787 (888)
Q Consensus 762 ~~l~~~~~~~~l~~TH~~-~l~~~~~~ 787 (888)
..++++.|.|+|++|||. |...++|+
T Consensus 177 ~~lh~~l~~T~IYVTHDq~EAmtladr 203 (338)
T COG3839 177 KKLHERLGTTTIYVTHDQVEAMTLADR 203 (338)
T ss_pred HHHHHhcCCcEEEEcCCHHHHHhhCCE
Confidence 567776899999999995 45568887
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.6e-17 Score=175.75 Aligned_cols=152 Identities=19% Similarity=0.166 Sum_probs=110.0
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh---------------------hhcCccccccc----ccccH
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM---------------------AQVGSFVPCDR----ASISV 698 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~---------------------a~~g~~vp~~~----~~~~~ 698 (888)
.+.++++|++.+|++++|+||||||||||+|+++++... .++ .|+|+.. ...++
T Consensus 18 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i-~~v~q~~~~~~~~~tv 96 (277)
T PRK13652 18 EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV-GLVFQNPDDQIFSPTV 96 (277)
T ss_pred ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe-EEEecCcccccccccH
Confidence 467899999999999999999999999999999865311 112 2444432 11111
Q ss_pred ---------------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHH
Q 002722 699 ---------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGL 756 (888)
Q Consensus 699 ---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i 756 (888)
++.++.++|..+........+|+++++...+.+ .+.+|+++|||||++|+|+.....+
T Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l 176 (277)
T PRK13652 97 EQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKEL 176 (277)
T ss_pred HHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 223455566666666667788877777655554 4789999999999999999888888
Q ss_pred HHHHHHHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEE
Q 002722 757 AWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 757 ~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
..++..+.++.|.++|++||+++.. +++++ +..+.++++.
T Consensus 177 -~~~l~~l~~~~g~tvli~tH~~~~~~~~~dr---------v~~l~~G~i~ 217 (277)
T PRK13652 177 -IDFLNDLPETYGMTVIFSTHQLDLVPEMADY---------IYVMDKGRIV 217 (277)
T ss_pred -HHHHHHHHHhcCCEEEEEecCHHHHHHhCCE---------EEEEECCeEE
Confidence 6666667653489999999998775 67877 5555555554
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=5e-17 Score=175.12 Aligned_cols=144 Identities=17% Similarity=0.147 Sum_probs=103.1
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh--------------------hhcCcccccccc---cccH-
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRA---SISV- 698 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~--------------------a~~g~~vp~~~~---~~~~- 698 (888)
..+.++++|++.+|++++|+||||||||||+|+++++... .+.-.|+|.... ..++
T Consensus 24 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 103 (265)
T PRK10575 24 RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVR 103 (265)
T ss_pred EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHH
Confidence 3577899999999999999999999999999999875311 011123443211 0111
Q ss_pred ------------------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhH
Q 002722 699 ------------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYDG 753 (888)
Q Consensus 699 ------------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il-~~~~~~slvllDEp~~gtd~~~~ 753 (888)
++.++.+++..+.+......+|+++++...++ ..+.+|+++|||||++|+|+...
T Consensus 104 e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~ 183 (265)
T PRK10575 104 ELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQ 183 (265)
T ss_pred HHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 22345556665555566677887776665554 45789999999999999999888
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 754 FGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
..+ ..++..+.+..|+++|++||+.+.. +++++
T Consensus 184 ~~~-~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~ 217 (265)
T PRK10575 184 VDV-LALVHRLSQERGLTVIAVLHDINMAARYCDY 217 (265)
T ss_pred HHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 887 6666666653489999999998765 57776
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-17 Score=168.23 Aligned_cols=146 Identities=22% Similarity=0.200 Sum_probs=105.8
Q ss_pred CcccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh--------------------hhcCc---c-----c---
Q 002722 641 WVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGS---F-----V--- 689 (888)
Q Consensus 641 ~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~--------------------a~~g~---~-----v--- 689 (888)
|+-...|+++|++.+|++++|+|||||||||++++|.+...+ ++.|. | .
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~l 94 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGL 94 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCCC
Confidence 334577999999999999999999999999999998654211 11110 0 0
Q ss_pred ----------------------cc----ccccccHHHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEe
Q 002722 690 ----------------------PC----DRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIID 742 (888)
Q Consensus 690 ----------------------p~----~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllD 742 (888)
|. +.........++.++|+.+......+.++.+.+++..|.+ .+++|.|+|||
T Consensus 95 TVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLD 174 (250)
T COG0411 95 TVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLD 174 (250)
T ss_pred cHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEEec
Confidence 00 0000111224566677777777777777766666555544 48999999999
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 743 ELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 743 Ep~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
||.+|++|.+...+ ..++..+.+..|.+++++-|++.+. .+||+
T Consensus 175 EPaAGln~~e~~~l-~~~i~~i~~~~g~tillIEHdM~~Vm~l~dr 219 (250)
T COG0411 175 EPAAGLNPEETEEL-AELIRELRDRGGVTILLIEHDMKLVMGLADR 219 (250)
T ss_pred CccCCCCHHHHHHH-HHHHHHHHhcCCcEEEEEEeccHHHhhhccE
Confidence 99999999999999 5667778765679999999999876 68877
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.3e-17 Score=152.47 Aligned_cols=156 Identities=21% Similarity=0.169 Sum_probs=108.5
Q ss_pred CcccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh--------------------hcCcccccccc------
Q 002722 641 WVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA--------------------QVGSFVPCDRA------ 694 (888)
Q Consensus 641 ~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a--------------------~~g~~vp~~~~------ 694 (888)
+...+.|+++|.+.+|++++||||+|||||||+|++|.+.-+. |--+|+.+..+
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tV 93 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTV 93 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccch
Confidence 3467899999999999999999999999999999998654211 11111111111
Q ss_pred ---------------cccHHHHHHHhcCCchhhh-hccchhHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChhhHHHHH
Q 002722 695 ---------------SISVRDCIFARVGAGDCQL-RGVSTFMQEMLE-TASILKGATDRSLIIIDELGRGTSTYDGFGLA 757 (888)
Q Consensus 695 ---------------~~~~~d~i~~~~~~~d~~~-~~~s~f~~e~~~-~~~il~~~~~~slvllDEp~~gtd~~~~~~i~ 757 (888)
.-..+-.++.|++..+.+. +....+|++.+| ++.+.....-|.++||||||+.+|+.+...|-
T Consensus 94 eDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie 173 (223)
T COG4619 94 EDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIE 173 (223)
T ss_pred hhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHH
Confidence 1112234678888776654 344455655544 45555557789999999999999999999994
Q ss_pred HHHHHHHHhcCCCeEEEEecChhH-HHHhhhccccccccccccEeEEEEE
Q 002722 758 WAICEHLVEEIRAPTLFATHFHEL-TALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 758 ~~il~~l~~~~~~~~l~~TH~~~l-~~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
.-+.+++.+ .+..++.+||+.+. .+.+++ +..+..+|..
T Consensus 174 ~mi~~~v~~-q~vAv~WiTHd~dqa~rha~k---------~itl~~G~~~ 213 (223)
T COG4619 174 EMIHRYVRE-QNVAVLWITHDKDQAIRHADK---------VITLQPGHAG 213 (223)
T ss_pred HHHHHHhhh-hceEEEEEecChHHHhhhhhe---------EEEeccCccc
Confidence 444455544 68999999999876 577777 5555555543
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.3e-17 Score=172.05 Aligned_cols=142 Identities=15% Similarity=0.113 Sum_probs=101.9
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh--------------------------hcCcccccccc---
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA--------------------------QVGSFVPCDRA--- 694 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a--------------------------~~g~~vp~~~~--- 694 (888)
.+.++++|++.+|++++|+||||||||||+|+++++.... +.-.|+|+...
T Consensus 16 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (242)
T PRK11124 16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWP 95 (242)
T ss_pred eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccC
Confidence 4678999999999999999999999999999998753110 01124443321
Q ss_pred cccHH----------------------HHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChh
Q 002722 695 SISVR----------------------DCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTY 751 (888)
Q Consensus 695 ~~~~~----------------------d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~ 751 (888)
..++. ..++.++|..+.+......+|+++++...+++ .+.+|+++|||||++|+|+.
T Consensus 96 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~ 175 (242)
T PRK11124 96 HLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPE 175 (242)
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHH
Confidence 11221 22344556655555556678877766655554 47899999999999999998
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 752 DGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 752 ~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
....+ ..+++.+.+ .|.++|++||+.+.. +++++
T Consensus 176 ~~~~l-~~~l~~~~~-~~~tii~~sh~~~~~~~~~d~ 210 (242)
T PRK11124 176 ITAQI-VSIIRELAE-TGITQVIVTHEVEVARKTASR 210 (242)
T ss_pred HHHHH-HHHHHHHHH-cCCEEEEEeCCHHHHHHhcCE
Confidence 88877 666777765 589999999998765 56776
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.8e-17 Score=175.56 Aligned_cols=154 Identities=16% Similarity=0.133 Sum_probs=110.7
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh----------------------hhcCcccccccc----cc
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----------------------AQVGSFVPCDRA----SI 696 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~----------------------a~~g~~vp~~~~----~~ 696 (888)
..+.++++|++.+|++++|+||||||||||+|+++++... .....|+|.... ..
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 98 (283)
T PRK13636 19 THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSA 98 (283)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccc
Confidence 3477799999999999999999999999999999875311 011235554421 11
Q ss_pred cH---------------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHH
Q 002722 697 SV---------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDGF 754 (888)
Q Consensus 697 ~~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~slvllDEp~~gtd~~~~~ 754 (888)
++ ++.++.++|+.+........+|+++++...+.+. +.+|+++|||||++|+|+....
T Consensus 99 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~ 178 (283)
T PRK13636 99 SVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVS 178 (283)
T ss_pred cHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHH
Confidence 11 2234455666665666677888887777665554 7899999999999999998888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEE
Q 002722 755 GLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
.+ ..++..+.++.|.++|++||+++.. .++++ .-.+.++++.
T Consensus 179 ~l-~~~l~~l~~~~g~tillvsH~~~~~~~~~dr---------i~~l~~G~i~ 221 (283)
T PRK13636 179 EI-MKLLVEMQKELGLTIIIATHDIDIVPLYCDN---------VFVMKEGRVI 221 (283)
T ss_pred HH-HHHHHHHHHhCCCEEEEEecCHHHHHHhCCE---------EEEEECCEEE
Confidence 88 6666666653489999999998876 47777 4445555543
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.1e-17 Score=170.51 Aligned_cols=143 Identities=18% Similarity=0.102 Sum_probs=101.1
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh--------------hcC-cccccccc-----------cc
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA--------------QVG-SFVPCDRA-----------SI 696 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a--------------~~g-~~vp~~~~-----------~~ 696 (888)
..+.++++|++.+|++++|+||||||||||+|+++++.... +.+ .+.|.... ..
T Consensus 35 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~~~ 114 (224)
T cd03220 35 FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLLGL 114 (224)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCCcHHHHHHHHHHHcCC
Confidence 45778999999999999999999999999999998764211 111 11121100 00
Q ss_pred c------HHHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCC
Q 002722 697 S------VRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIR 769 (888)
Q Consensus 697 ~------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~ 769 (888)
. .+..++..++..+........+|+++++...+.+ .+.+|+++|||||++|+|+.....+ +.++..+.+ .|
T Consensus 115 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~-~~~l~~~~~-~~ 192 (224)
T cd03220 115 SRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKC-QRRLRELLK-QG 192 (224)
T ss_pred CHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHHHHHHHh-CC
Confidence 0 1123444556666566666788877776655544 4789999999999999999988888 556666666 48
Q ss_pred CeEEEEecChhHH-HHhhh
Q 002722 770 APTLFATHFHELT-ALAHE 787 (888)
Q Consensus 770 ~~~l~~TH~~~l~-~~~~~ 787 (888)
.++|++||+.+.. .++++
T Consensus 193 ~tiii~sH~~~~~~~~~d~ 211 (224)
T cd03220 193 KTVILVSHDPSSIKRLCDR 211 (224)
T ss_pred CEEEEEeCCHHHHHHhCCE
Confidence 8999999998765 56766
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=6e-17 Score=180.47 Aligned_cols=154 Identities=18% Similarity=0.149 Sum_probs=112.3
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh------------------hcCccccccccc---cc-----
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA------------------QVGSFVPCDRAS---IS----- 697 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a------------------~~g~~vp~~~~~---~~----- 697 (888)
.+.++++|++.+|++++|+||||||||||||+|+++.... +.-.|+|++.+- ++
T Consensus 16 ~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni 95 (353)
T PRK10851 16 QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNI 95 (353)
T ss_pred EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHH
Confidence 4677999999999999999999999999999998763211 001233332211 01
Q ss_pred --------------------HHHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHH
Q 002722 698 --------------------VRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGL 756 (888)
Q Consensus 698 --------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i 756 (888)
.+..++.++++.+........+|++++|...+.+ .+.+|+++|||||++|+|+.....+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l 175 (353)
T PRK10851 96 AFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKEL 175 (353)
T ss_pred HhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH
Confidence 1223566677776667777888888877766555 4789999999999999999998888
Q ss_pred HHHHHHHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEEE
Q 002722 757 AWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSA 807 (888)
Q Consensus 757 ~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (888)
..++..+.++.|.++|++||+++.+ .++++ +..+.++++..
T Consensus 176 -~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dr---------i~vl~~G~i~~ 217 (353)
T PRK10851 176 -RRWLRQLHEELKFTSVFVTHDQEEAMEVADR---------VVVMSQGNIEQ 217 (353)
T ss_pred -HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE---------EEEEECCEEEE
Confidence 5566666654589999999998764 67887 55566666643
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.6e-17 Score=169.86 Aligned_cols=142 Identities=16% Similarity=0.096 Sum_probs=100.1
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh--------------------hhcCccccccccc--ccHHH
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRAS--ISVRD 700 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~--------------------a~~g~~vp~~~~~--~~~~d 700 (888)
..+.++++|++.+|++++|+||||||||||+++++++... ...-.|+|+.... .++.+
T Consensus 17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e 96 (220)
T cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRD 96 (220)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHH
Confidence 3578899999999999999999999999999999875321 0112244443311 11111
Q ss_pred ---------------HHHHhcCCchhhhh-----------ccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhH
Q 002722 701 ---------------CIFARVGAGDCQLR-----------GVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDG 753 (888)
Q Consensus 701 ---------------~i~~~~~~~d~~~~-----------~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~ 753 (888)
.++..++..+.+.. ....+|+++++...+.+ .+.+|+++|||||++|+|+...
T Consensus 97 ~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~ 176 (220)
T cd03245 97 NITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSE 176 (220)
T ss_pred HhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence 23344455443332 12478877777655555 4789999999999999999988
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 754 FGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
..+ +.++..+.+ +.++|++||++++.+++++
T Consensus 177 ~~l-~~~l~~~~~--~~tii~~sH~~~~~~~~d~ 207 (220)
T cd03245 177 ERL-KERLRQLLG--DKTLIIITHRPSLLDLVDR 207 (220)
T ss_pred HHH-HHHHHHhcC--CCEEEEEeCCHHHHHhCCE
Confidence 888 566666665 4899999999987777776
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.9e-17 Score=182.11 Aligned_cols=154 Identities=14% Similarity=0.089 Sum_probs=112.3
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhh------------------cCcccccccc---cccH----
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ------------------VGSFVPCDRA---SISV---- 698 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~------------------~g~~vp~~~~---~~~~---- 698 (888)
.+.++++|++.+|++++|+||||||||||||+|+++..... .-.|+++..+ .+++
T Consensus 28 ~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi 107 (375)
T PRK09452 28 EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENV 107 (375)
T ss_pred EEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHH
Confidence 46789999999999999999999999999999997642210 0123333321 1111
Q ss_pred -----------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHH
Q 002722 699 -----------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAI 760 (888)
Q Consensus 699 -----------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~i 760 (888)
++.++..+|+.+.+......+|++++|...+.+ .+.+|+++|||||++|+|+.....+ ...
T Consensus 108 ~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l-~~~ 186 (375)
T PRK09452 108 AFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQM-QNE 186 (375)
T ss_pred HHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHH-HHH
Confidence 223455567777677777888877766655554 5889999999999999999988888 556
Q ss_pred HHHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEEE
Q 002722 761 CEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSA 807 (888)
Q Consensus 761 l~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (888)
++.+.++.|.++|++||+++.+ .++|+ +..+.++++..
T Consensus 187 L~~l~~~~g~tiI~vTHd~~ea~~laDr---------i~vl~~G~i~~ 225 (375)
T PRK09452 187 LKALQRKLGITFVFVTHDQEEALTMSDR---------IVVMRDGRIEQ 225 (375)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCCE---------EEEEECCEEEE
Confidence 6666654689999999997764 68887 55566666643
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.5e-17 Score=176.02 Aligned_cols=143 Identities=15% Similarity=0.132 Sum_probs=104.8
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh------------------------hcCcccccccc--c--
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA------------------------QVGSFVPCDRA--S-- 695 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a------------------------~~g~~vp~~~~--~-- 695 (888)
.+.++++|++.+|++++|+||||||||||+|+++++.... +.-.|+|.... -
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~ 100 (286)
T PRK13646 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE 100 (286)
T ss_pred CceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccch
Confidence 5788999999999999999999999999999998653110 01124444320 0
Q ss_pred ccH---------------------HHHHHHhcCCc-hhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhh
Q 002722 696 ISV---------------------RDCIFARVGAG-DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYD 752 (888)
Q Consensus 696 ~~~---------------------~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~ 752 (888)
.++ +..++..+|.. +........+|+++++...+++ .+.+|+++|||||++|+|+..
T Consensus 101 ~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~ 180 (286)
T PRK13646 101 DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQS 180 (286)
T ss_pred hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHH
Confidence 011 12345556765 4455667788877777665555 478999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 753 GFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 753 ~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
...+ ..++..+.++.|.++|++||+.+.. +++++
T Consensus 181 ~~~l-~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dr 215 (286)
T PRK13646 181 KRQV-MRLLKSLQTDENKTIILVSHDMNEVARYADE 215 (286)
T ss_pred HHHH-HHHHHHHHHhCCCEEEEEecCHHHHHHhCCE
Confidence 8888 6677777653589999999998765 57777
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.9e-17 Score=168.81 Aligned_cols=141 Identities=19% Similarity=0.169 Sum_probs=100.9
Q ss_pred cCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh------------------hcCcccccccc---cccH------
Q 002722 646 PNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA------------------QVGSFVPCDRA---SISV------ 698 (888)
Q Consensus 646 ~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a------------------~~g~~vp~~~~---~~~~------ 698 (888)
..+++|++.+|++++|+||||||||||+|+++++.... ....|+|+... ..++
T Consensus 14 ~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~ 93 (213)
T TIGR01277 14 PMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGL 93 (213)
T ss_pred ceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHh
Confidence 35788999999999999999999999999998764211 11224443321 1111
Q ss_pred ---------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHH
Q 002722 699 ---------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICE 762 (888)
Q Consensus 699 ---------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~il~ 762 (888)
+..++..+|..+........+|+++++...+.+ .+.+|+++|||||++|+|+.....+ ..+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~-~~~l~ 172 (213)
T TIGR01277 94 GLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEM-LALVK 172 (213)
T ss_pred HhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHH-HHHHH
Confidence 123455566655556666778877776655554 5789999999999999999988888 55666
Q ss_pred HHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 763 HLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 763 ~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
.+.++.+.++|++||+.+.. +++++
T Consensus 173 ~~~~~~~~tii~vsh~~~~~~~~~d~ 198 (213)
T TIGR01277 173 QLCSERQRTLLMVTHHLSDARAIASQ 198 (213)
T ss_pred HHHHhcCCEEEEEeCCHHHHHhhcCe
Confidence 66553489999999998764 56776
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.2e-17 Score=169.03 Aligned_cols=143 Identities=17% Similarity=0.184 Sum_probs=103.9
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh-----------------------hhcCcccccccc---ccc
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-----------------------AQVGSFVPCDRA---SIS 697 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~-----------------------a~~g~~vp~~~~---~~~ 697 (888)
.+.++++|++.+|++++|+||||||||||++++++.... .+.-.|+|.... ..+
T Consensus 19 ~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (220)
T TIGR02982 19 QVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLT 98 (220)
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCC
Confidence 467799999999999999999999999999999865211 011123333211 011
Q ss_pred ----------------------HHHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHH
Q 002722 698 ----------------------VRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGF 754 (888)
Q Consensus 698 ----------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~ 754 (888)
.+..++.++|..+........+|+++++...+.+ .+.+|+++|||||++|+|+....
T Consensus 99 ~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~ 178 (220)
T TIGR02982 99 ARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGR 178 (220)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHH
Confidence 1234556667766666667778877766655554 47899999999999999998888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 755 GLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
.+ ..+++.+.+..+.++|++||++++.+++++
T Consensus 179 ~l-~~~l~~~~~~~~~tii~~sh~~~~~~~~d~ 210 (220)
T TIGR02982 179 DV-VELMQKLAREQGCTILIVTHDNRILDVADR 210 (220)
T ss_pred HH-HHHHHHHHHHcCCEEEEEeCCHHHHhhCCE
Confidence 88 666666665358999999999987777766
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.5e-17 Score=168.46 Aligned_cols=139 Identities=16% Similarity=0.106 Sum_probs=101.6
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh--------------------hhcCcccccccc---ccc---
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRA---SIS--- 697 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~--------------------a~~g~~vp~~~~---~~~--- 697 (888)
.+.++++|++.+|++++|+||||||||||+|+++++... .++ .|+|.... ..+
T Consensus 15 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~tv~e 93 (204)
T PRK13538 15 ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDL-LYLGHQPGIKTELTALE 93 (204)
T ss_pred EEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhhe-EEeCCccccCcCCcHHH
Confidence 467799999999999999999999999999999865311 111 12322210 011
Q ss_pred ---------------HHHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHH
Q 002722 698 ---------------VRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAIC 761 (888)
Q Consensus 698 ---------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~il 761 (888)
.++.++.++|..+......+.+|+++++...+++ .+.+|+++|||||++|+|+.....+ ..++
T Consensus 94 ~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l-~~~l 172 (204)
T PRK13538 94 NLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARL-EALL 172 (204)
T ss_pred HHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH-HHHH
Confidence 1234566677766666677788877776655554 4789999999999999999988888 6666
Q ss_pred HHHHhcCCCeEEEEecChhHHHHh
Q 002722 762 EHLVEEIRAPTLFATHFHELTALA 785 (888)
Q Consensus 762 ~~l~~~~~~~~l~~TH~~~l~~~~ 785 (888)
+.+.+ .+.++|++||+.+....+
T Consensus 173 ~~~~~-~~~tiii~sh~~~~i~~~ 195 (204)
T PRK13538 173 AQHAE-QGGMVILTTHQDLPVASD 195 (204)
T ss_pred HHHHH-CCCEEEEEecChhhhccC
Confidence 66665 588999999998776543
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.6e-17 Score=167.34 Aligned_cols=138 Identities=17% Similarity=0.124 Sum_probs=99.7
Q ss_pred CccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh------------------------hcCcccccccc---cccH--
Q 002722 648 DCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA------------------------QVGSFVPCDRA---SISV-- 698 (888)
Q Consensus 648 ~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a------------------------~~g~~vp~~~~---~~~~-- 698 (888)
+++|++.+ ++++|+||||||||||+++++++.... +.-.|+|.... ..++
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~ 94 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRE 94 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHH
Confidence 88999999 999999999999999999998753210 01123443321 1111
Q ss_pred -----------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHH
Q 002722 699 -----------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAI 760 (888)
Q Consensus 699 -----------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~i 760 (888)
+..++.++|..+......+.+|+++++...+++ .+.+|+++|||||++|+|+.....+ ..+
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l-~~~ 173 (214)
T cd03297 95 NLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQL-LPE 173 (214)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH-HHH
Confidence 123456667666566667788877777655554 4789999999999999999888888 566
Q ss_pred HHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 761 CEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 761 l~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
+..+.++.|+++|++||+.+.. .++++
T Consensus 174 l~~~~~~~~~tiii~sH~~~~~~~~~d~ 201 (214)
T cd03297 174 LKQIKKNLNIPVIFVTHDLSEAEYLADR 201 (214)
T ss_pred HHHHHHHcCcEEEEEecCHHHHHHhcCE
Confidence 6666653488999999998765 57776
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.7e-17 Score=175.03 Aligned_cols=143 Identities=17% Similarity=0.037 Sum_probs=102.9
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh--------------------hcCcccccccc----ccc--
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA--------------------QVGSFVPCDRA----SIS-- 697 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a--------------------~~g~~vp~~~~----~~~-- 697 (888)
.+.++++|++.+|++++|+||||||||||+|+++++.... +.-.|+|.... ...
T Consensus 23 ~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~ 102 (269)
T PRK13648 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVK 102 (269)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHH
Confidence 4778999999999999999999999999999998753210 11124443321 000
Q ss_pred -------------------HHHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHH
Q 002722 698 -------------------VRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLA 757 (888)
Q Consensus 698 -------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~ 757 (888)
.+..++..+|..+........+|+++++...+++ .+.+|+++|||||++|+|+.....+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l- 181 (269)
T PRK13648 103 YDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNL- 181 (269)
T ss_pred HHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH-
Confidence 1123445566665566666778877766655554 4789999999999999999988888
Q ss_pred HHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 758 WAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 758 ~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
..++..+.++.|.++|++||+.+....+++
T Consensus 182 ~~~L~~~~~~~~~tiiivtH~~~~~~~~d~ 211 (269)
T PRK13648 182 LDLVRKVKSEHNITIISITHDLSEAMEADH 211 (269)
T ss_pred HHHHHHHHHhcCCEEEEEecCchHHhcCCE
Confidence 556666655348999999999877655665
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.9e-17 Score=165.16 Aligned_cols=135 Identities=17% Similarity=0.242 Sum_probs=93.6
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHH--hhhhcC------------------cccccccccccHHHHH
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI--LMAQVG------------------SFVPCDRASISVRDCI 702 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~--~~a~~g------------------~~vp~~~~~~~~~d~i 702 (888)
..+.++++|++.+|++++|+||||||||||+|+++++. ... -| .|+|.... +
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~-~G~i~~~g~~~~~~~~~~~i~~~~q~~~-------~ 93 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGV-SGEVLINGRPLDKRSFRKIIGYVPQDDI-------L 93 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC-ceEEEECCEeCchHhhhheEEEccCccc-------C
Confidence 35788999999999999999999999999999999875 321 12 12232211 1
Q ss_pred HHhcCCchhhhhc--cchhHHHHHHHHHH-HHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecCh
Q 002722 703 FARVGAGDCQLRG--VSTFMQEMLETASI-LKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFH 779 (888)
Q Consensus 703 ~~~~~~~d~~~~~--~s~f~~e~~~~~~i-l~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~ 779 (888)
+..+...+++... ...+|+++++...+ ...+.+|+++|||||++|+|+.....+ ..+++.+.+ .|.++|++||++
T Consensus 94 ~~~~t~~~~i~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l-~~~l~~~~~-~~~tiii~sh~~ 171 (194)
T cd03213 94 HPTLTVRETLMFAAKLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQV-MSLLRRLAD-TGRTIICSIHQP 171 (194)
T ss_pred CCCCcHHHHHHHHHHhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHH-HHHHHHHHh-CCCEEEEEecCc
Confidence 1111222222211 11566666555444 445789999999999999999888887 666677766 489999999997
Q ss_pred h--HHHHhhh
Q 002722 780 E--LTALAHE 787 (888)
Q Consensus 780 ~--l~~~~~~ 787 (888)
+ +.+++++
T Consensus 172 ~~~~~~~~d~ 181 (194)
T cd03213 172 SSEIFELFDK 181 (194)
T ss_pred hHHHHHhcCE
Confidence 4 4567776
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.9e-17 Score=176.58 Aligned_cols=154 Identities=17% Similarity=0.106 Sum_probs=110.6
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh------------------------hcCcccccccc----c
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA------------------------QVGSFVPCDRA----S 695 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a------------------------~~g~~vp~~~~----~ 695 (888)
.+.++++|++.+|++++|+||||||||||+|+++++.... +...|+|+... .
T Consensus 21 ~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~ 100 (290)
T PRK13634 21 RALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFE 100 (290)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhh
Confidence 4778999999999999999999999999999998753211 11124454320 0
Q ss_pred ccH---------------------HHHHHHhcCCc-hhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhh
Q 002722 696 ISV---------------------RDCIFARVGAG-DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYD 752 (888)
Q Consensus 696 ~~~---------------------~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~ 752 (888)
.++ ++.++.++|+. +........+|+++++...+.+ .+.+|+++|||||++|+|+..
T Consensus 101 ~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~ 180 (290)
T PRK13634 101 ETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKG 180 (290)
T ss_pred hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 111 22344566765 3345667788877777655555 478999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEEE
Q 002722 753 GFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSA 807 (888)
Q Consensus 753 ~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (888)
...+ ..++..+.++.|.++|++||+++.. +++++ +..+.++.+..
T Consensus 181 ~~~l-~~~L~~l~~~~g~tviiitHd~~~~~~~~dr---------v~~l~~G~i~~ 226 (290)
T PRK13634 181 RKEM-MEMFYKLHKEKGLTTVLVTHSMEDAARYADQ---------IVVMHKGTVFL 226 (290)
T ss_pred HHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE---------EEEEECCEEEE
Confidence 8888 6667777654589999999998765 57877 55566665543
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.4e-17 Score=170.44 Aligned_cols=153 Identities=19% Similarity=0.155 Sum_probs=108.9
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh------------------hcCccccccccc---ccH----
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA------------------QVGSFVPCDRAS---ISV---- 698 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a------------------~~g~~vp~~~~~---~~~---- 698 (888)
.+.++++|++.+|++++|+||||||||||+++++++.... +.-.|+|..... .++
T Consensus 14 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl 93 (237)
T TIGR00968 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNI 93 (237)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHH
Confidence 5788999999999999999999999999999998753110 111244433210 111
Q ss_pred -----------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHH
Q 002722 699 -----------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAI 760 (888)
Q Consensus 699 -----------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~i 760 (888)
++.++.+++..+........+|+++++...+.+ .+.+|+++|||||++|+|+.....+ +.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~-~~~ 172 (237)
T TIGR00968 94 AFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKEL-RSW 172 (237)
T ss_pred HhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH-HHH
Confidence 234456666665556666778877766655544 4789999999999999999888887 666
Q ss_pred HHHHHhcCCCeEEEEecChhH-HHHhhhccccccccccccEeEEEEE
Q 002722 761 CEHLVEEIRAPTLFATHFHEL-TALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 761 l~~l~~~~~~~~l~~TH~~~l-~~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
++.+.++.++++|++||+++. ..++++ ...+.++++.
T Consensus 173 l~~~~~~~~~tvli~sH~~~~~~~~~d~---------i~~l~~g~i~ 210 (237)
T TIGR00968 173 LRKLHDEVHVTTVFVTHDQEEAMEVADR---------IVVMSNGKIE 210 (237)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHhhcCE---------EEEEECCEEE
Confidence 666665348999999999876 467777 5556665553
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.2e-17 Score=178.35 Aligned_cols=156 Identities=15% Similarity=0.092 Sum_probs=114.0
Q ss_pred CcccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhc--------C----------ccccccccc---ccH-
Q 002722 641 WVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQV--------G----------SFVPCDRAS---ISV- 698 (888)
Q Consensus 641 ~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~--------g----------~~vp~~~~~---~~~- 698 (888)
+...+.+|++|++.+|+++.|.||+||||||+||+||++.-+... - .+|.+++|- +++
T Consensus 16 g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~ 95 (352)
T COG3842 16 GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVE 95 (352)
T ss_pred CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHH
Confidence 345778899999999999999999999999999999987533210 0 122222221 111
Q ss_pred ---------------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhHHHH
Q 002722 699 ---------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYDGFGL 756 (888)
Q Consensus 699 ---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il-~~~~~~slvllDEp~~gtd~~~~~~i 756 (888)
+...+..+++.+...+..+.+|++++|...+. +.+.+|.++|||||.+.+|..-+..+
T Consensus 96 ~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~m 175 (352)
T COG3842 96 ENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQM 175 (352)
T ss_pred HHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHH
Confidence 23345556777777777788888777665554 45889999999999999999999998
Q ss_pred HHHHHHHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEE
Q 002722 757 AWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 757 ~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
...+. .+.++.|.|+|++|||.+.+ .++|+ +..+..+++.
T Consensus 176 r~Elk-~lq~~~giT~i~VTHDqeEAl~msDr---------I~Vm~~G~I~ 216 (352)
T COG3842 176 RKELK-ELQRELGITFVYVTHDQEEALAMSDR---------IAVMNDGRIE 216 (352)
T ss_pred HHHHH-HHHHhcCCeEEEEECCHHHHhhhccc---------eEEccCCcee
Confidence 55554 45555799999999998766 67887 5556666654
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-17 Score=169.47 Aligned_cols=135 Identities=13% Similarity=0.109 Sum_probs=93.4
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh-hhcC-----------------cccccccccccHHHHHHHh
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-AQVG-----------------SFVPCDRASISVRDCIFAR 705 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~-a~~g-----------------~~vp~~~~~~~~~d~i~~~ 705 (888)
.+.++++|++.+|++++|+||||||||||||+++++... ..-| .|+|.... ++..
T Consensus 21 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~-------~~~~ 93 (192)
T cd03232 21 QLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDV-------HSPN 93 (192)
T ss_pred EeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCc-------cccC
Confidence 467799999999999999999999999999999975321 1222 12232211 1111
Q ss_pred cCCchhhhhcc--chhHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhH-
Q 002722 706 VGAGDCQLRGV--STFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHEL- 781 (888)
Q Consensus 706 ~~~~d~~~~~~--s~f~~e~~~~~~il-~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l- 781 (888)
+...+++..+. ..+|+++++...+. ..+.+|+++|+|||++|+|+.....+ +.++..+.+ .|+++|++||+++.
T Consensus 94 ~tv~~~l~~~~~~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l-~~~l~~~~~-~~~tiiivtH~~~~~ 171 (192)
T cd03232 94 LTVREALRFSALLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNI-VRFLKKLAD-SGQAILCTIHQPSAS 171 (192)
T ss_pred CcHHHHHHHHHHHhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHH-HHHHHHHHH-cCCEEEEEEcCChHH
Confidence 22222222111 16776666655444 45789999999999999999888888 667777766 58999999999863
Q ss_pred -HHHhhh
Q 002722 782 -TALAHE 787 (888)
Q Consensus 782 -~~~~~~ 787 (888)
...+++
T Consensus 172 ~~~~~d~ 178 (192)
T cd03232 172 IFEKFDR 178 (192)
T ss_pred HHhhCCE
Confidence 567766
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=99.70 E-value=5e-17 Score=164.37 Aligned_cols=129 Identities=13% Similarity=0.089 Sum_probs=90.8
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhcCc--------------------ccccccccccHHHHHH
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGS--------------------FVPCDRASISVRDCIF 703 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~g~--------------------~vp~~~~~~~~~d~i~ 703 (888)
.+.++++|++.+|++++|+||||||||||+|+++++... ..|. |+|.... ++
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~-------~~ 87 (178)
T cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKP-QQGEITLDGVPVSDLEKALSSLISVLNQRPY-------LF 87 (178)
T ss_pred cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC-CCCEEEECCEEHHHHHHHHHhhEEEEccCCe-------ee
Confidence 466789999999999999999999999999999886432 1221 1121110 11
Q ss_pred HhcCCchhhhhccchhHHHHHHHHH-HHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH
Q 002722 704 ARVGAGDCQLRGVSTFMQEMLETAS-ILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT 782 (888)
Q Consensus 704 ~~~~~~d~~~~~~s~f~~e~~~~~~-il~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~ 782 (888)
. ....+++ ...+|+++++... +...+.+|+++|||||++|+|+.....+ +.++..+. .+.++|++||+.+..
T Consensus 88 ~-~tv~~~i---~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l-~~~l~~~~--~~~tii~~sh~~~~~ 160 (178)
T cd03247 88 D-TTLRNNL---GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQL-LSLIFEVL--KDKTLIWITHHLTGI 160 (178)
T ss_pred c-ccHHHhh---cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHH-HHHHHHHc--CCCEEEEEecCHHHH
Confidence 0 1122232 4456655555544 4445889999999999999999888877 55666664 378999999998877
Q ss_pred HHhhh
Q 002722 783 ALAHE 787 (888)
Q Consensus 783 ~~~~~ 787 (888)
..+++
T Consensus 161 ~~~d~ 165 (178)
T cd03247 161 EHMDK 165 (178)
T ss_pred HhCCE
Confidence 76655
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.2e-17 Score=172.72 Aligned_cols=143 Identities=17% Similarity=0.104 Sum_probs=102.6
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh---------------------------------hcCccc
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA---------------------------------QVGSFV 689 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a---------------------------------~~g~~v 689 (888)
..+.++++|++.+|++++|+||||||||||+|+++++.... +.-.|+
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 97 (257)
T PRK10619 18 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMV 97 (257)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEE
Confidence 35778999999999999999999999999999998653210 011233
Q ss_pred cccccc---ccHHH----------------------HHHHhcCCchhh-hhccchhHHHHHHHHHHHH-hCCCCcEEEEe
Q 002722 690 PCDRAS---ISVRD----------------------CIFARVGAGDCQ-LRGVSTFMQEMLETASILK-GATDRSLIIID 742 (888)
Q Consensus 690 p~~~~~---~~~~d----------------------~i~~~~~~~d~~-~~~~s~f~~e~~~~~~il~-~~~~~slvllD 742 (888)
|....- .++.+ .++.++|..+.. ....+.+|+++++...+.+ .+.+|+++|||
T Consensus 98 ~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 177 (257)
T PRK10619 98 FQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFD 177 (257)
T ss_pred ecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 333210 11211 234555665443 4556778877777655555 47899999999
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHH-Hhhh
Q 002722 743 ELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTA-LAHE 787 (888)
Q Consensus 743 Ep~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~-~~~~ 787 (888)
||++|+|+.....+ ..++..+.+ .|+++|++||+.+... ++++
T Consensus 178 EPt~~LD~~~~~~l-~~~l~~l~~-~g~tiiivsH~~~~~~~~~d~ 221 (257)
T PRK10619 178 EPTSALDPELVGEV-LRIMQQLAE-EGKTMVVVTHEMGFARHVSSH 221 (257)
T ss_pred CCcccCCHHHHHHH-HHHHHHHHh-cCCEEEEEeCCHHHHHHhcCE
Confidence 99999999888888 566677766 5899999999987664 6776
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.5e-17 Score=172.49 Aligned_cols=143 Identities=20% Similarity=0.233 Sum_probs=103.4
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh--------------------hhcCcccccccc---cccHH
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRA---SISVR 699 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~--------------------a~~g~~vp~~~~---~~~~~ 699 (888)
..+.++++|++.+|++++|+||||||||||||+++++.-. .+.-.|+|++.. ..++.
T Consensus 14 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 93 (256)
T TIGR03873 14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVR 93 (256)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHH
Confidence 3577899999999999999999999999999999875311 111124444321 11111
Q ss_pred -------------------------HHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhH
Q 002722 700 -------------------------DCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDG 753 (888)
Q Consensus 700 -------------------------d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~ 753 (888)
..++.+++..+........+|+++++...+.+ .+.+|+++|||||++|+|+...
T Consensus 94 e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~ 173 (256)
T TIGR03873 94 DVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQ 173 (256)
T ss_pred HHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHH
Confidence 22344556655555666778877776655554 4789999999999999999888
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 754 FGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
..+ ..+++.+.+ .|.++|++||+++.. +++++
T Consensus 174 ~~l-~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~ 206 (256)
T TIGR03873 174 LET-LALVRELAA-TGVTVVAALHDLNLAASYCDH 206 (256)
T ss_pred HHH-HHHHHHHHh-cCCEEEEEeCCHHHHHHhCCE
Confidence 888 666777765 588999999998776 67776
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.3e-17 Score=173.02 Aligned_cols=144 Identities=17% Similarity=0.084 Sum_probs=102.5
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh-----------------------hhcCcccccccc-----
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-----------------------AQVGSFVPCDRA----- 694 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~-----------------------a~~g~~vp~~~~----- 694 (888)
..+.++++|++.+|++++|+||||||||||||+++++... .+.-.|+|+...
T Consensus 24 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 103 (265)
T TIGR02769 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNP 103 (265)
T ss_pred eEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCC
Confidence 4678899999999999999999999999999999865310 111234444320
Q ss_pred cccH----------------------HHHHHHhcCCc-hhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCCh
Q 002722 695 SISV----------------------RDCIFARVGAG-DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTST 750 (888)
Q Consensus 695 ~~~~----------------------~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~ 750 (888)
...+ +..++..+|.. .........+|+++++...+.+ .+.+|+++|||||++|+|+
T Consensus 104 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~ 183 (265)
T TIGR02769 104 RMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDM 183 (265)
T ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 0111 12344556664 3345556677777776655554 5789999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCeEEEEecChhHHH-Hhhh
Q 002722 751 YDGFGLAWAICEHLVEEIRAPTLFATHFHELTA-LAHE 787 (888)
Q Consensus 751 ~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~-~~~~ 787 (888)
.....+ ..+++.+.+..|.++|++||+.+... ++++
T Consensus 184 ~~~~~l-~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~ 220 (265)
T TIGR02769 184 VLQAVI-LELLRKLQQAFGTAYLFITHDLRLVQSFCQR 220 (265)
T ss_pred HHHHHH-HHHHHHHHHhcCcEEEEEeCCHHHHHHHhcE
Confidence 888877 55666665534899999999988764 6776
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.9e-17 Score=172.93 Aligned_cols=153 Identities=20% Similarity=0.130 Sum_probs=108.8
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh-----------------h------------hcCcccccccc
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-----------------A------------QVGSFVPCDRA 694 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~-----------------a------------~~g~~vp~~~~ 694 (888)
.+.++++|++.+|++++|+||||||||||+|+++++... . +...|+|....
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~ 99 (258)
T PRK11701 20 KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPR 99 (258)
T ss_pred eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcc
Confidence 577899999999999999999999999999999865311 0 01235554431
Q ss_pred -----cccH----------------------HHHHHHhcCCch-hhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCC
Q 002722 695 -----SISV----------------------RDCIFARVGAGD-CQLRGVSTFMQEMLETASILK-GATDRSLIIIDELG 745 (888)
Q Consensus 695 -----~~~~----------------------~d~i~~~~~~~d-~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~ 745 (888)
.+.. ++.++..++..+ .+....+.+|+++++...+.+ .+.+|+++|||||+
T Consensus 100 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt 179 (258)
T PRK11701 100 DGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPT 179 (258)
T ss_pred cccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 0110 123455566653 456667788877766655554 57899999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHH-HhhhccccccccccccEeEEEEE
Q 002722 746 RGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTA-LAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 746 ~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~-~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
+|+|+.....+ +.+++.+.++.|.++|++||+.+... ++++ +..+.++++.
T Consensus 180 ~~LD~~~~~~l-~~~l~~~~~~~~~tii~isH~~~~~~~~~d~---------i~~l~~g~i~ 231 (258)
T PRK11701 180 GGLDVSVQARL-LDLLRGLVRELGLAVVIVTHDLAVARLLAHR---------LLVMKQGRVV 231 (258)
T ss_pred ccCCHHHHHHH-HHHHHHHHHhcCcEEEEEeCCHHHHHHhcCE---------EEEEECCEEE
Confidence 99999888887 55666665534899999999988775 6776 5556665553
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1e-16 Score=170.84 Aligned_cols=141 Identities=13% Similarity=0.112 Sum_probs=103.5
Q ss_pred ccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh-------------------hhcCcccccccc---ccc-----
Q 002722 645 IPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-------------------AQVGSFVPCDRA---SIS----- 697 (888)
Q Consensus 645 v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~-------------------a~~g~~vp~~~~---~~~----- 697 (888)
+.++++|++.+|++++|+||||||||||+|+++++... .+.-.|+|+... ..+
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl 90 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYL 90 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHH
Confidence 46789999999999999999999999999999876310 000124443321 011
Q ss_pred ---------------HHHHHHHhcCCchhhhhccchhHHHHHHHHHHHHhC-C-------CCcEEEEeCCCCCCChhhHH
Q 002722 698 ---------------VRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGA-T-------DRSLIIIDELGRGTSTYDGF 754 (888)
Q Consensus 698 ---------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~-~-------~~slvllDEp~~gtd~~~~~ 754 (888)
.++.++.++|..+........+|+++++...+++.. . +|+++|||||++|+|+....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~ 170 (248)
T PRK03695 91 TLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQA 170 (248)
T ss_pred HhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHH
Confidence 123456667776666677788888888877766653 3 56999999999999999888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecChh-HHHHhhh
Q 002722 755 GLAWAICEHLVEEIRAPTLFATHFHE-LTALAHE 787 (888)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~~-l~~~~~~ 787 (888)
.+ ..++..+.+ .|.++|++||+.+ +..++++
T Consensus 171 ~l-~~~L~~~~~-~~~tvi~~sH~~~~~~~~~d~ 202 (248)
T PRK03695 171 AL-DRLLSELCQ-QGIAVVMSSHDLNHTLRHADR 202 (248)
T ss_pred HH-HHHHHHHHh-CCCEEEEEecCHHHHHHhCCE
Confidence 88 666677765 4899999999987 4567776
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=9e-17 Score=172.07 Aligned_cols=143 Identities=15% Similarity=0.069 Sum_probs=101.5
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh------h----------------hcCcccccccc-c----c
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM------A----------------QVGSFVPCDRA-S----I 696 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~------a----------------~~g~~vp~~~~-~----~ 696 (888)
.+.++++|++.+|++++|+||||||||||+|+++++.-. + +.-.|+|.+.. . .
T Consensus 17 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~ 96 (254)
T PRK10418 17 PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLH 96 (254)
T ss_pred ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccc
Confidence 467799999999999999999999999999999886432 1 11124444321 0 0
Q ss_pred cH-------------------HHHHHHhcCCch---hhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhH
Q 002722 697 SV-------------------RDCIFARVGAGD---CQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDG 753 (888)
Q Consensus 697 ~~-------------------~d~i~~~~~~~d---~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~ 753 (888)
.+ +..++.+++..+ .+......+|+++++...+++ .+.+|+++|||||++|+|+...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~ 176 (254)
T PRK10418 97 TMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQ 176 (254)
T ss_pred cHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHH
Confidence 11 122344455543 245556778877766655554 5789999999999999999888
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 754 FGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
..+ ..+++.+.++.|.++|++||+++.. +++++
T Consensus 177 ~~l-~~~L~~~~~~~g~til~~sH~~~~~~~~~d~ 210 (254)
T PRK10418 177 ARI-LDLLESIVQKRALGMLLVTHDMGVVARLADD 210 (254)
T ss_pred HHH-HHHHHHHHHhcCcEEEEEecCHHHHHHhCCE
Confidence 887 6666666553589999999998765 57776
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.2e-17 Score=164.89 Aligned_cols=139 Identities=19% Similarity=0.176 Sum_probs=90.7
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhcCcc-ccccc-ccccH-HHH-------------HHHhcC
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSF-VPCDR-ASISV-RDC-------------IFARVG 707 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~g~~-vp~~~-~~~~~-~d~-------------i~~~~~ 707 (888)
.+.++++|++.+|++++|+||||||||||+|+++++... .-|.. +.... ...+. ... ++....
T Consensus 14 ~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 92 (178)
T cd03229 14 TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP-DSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLT 92 (178)
T ss_pred EEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCC
Confidence 466789999999999999999999999999999876432 22211 11100 00000 000 111111
Q ss_pred CchhhhhccchhHHHHHHH-HHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHH-Hh
Q 002722 708 AGDCQLRGVSTFMQEMLET-ASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTA-LA 785 (888)
Q Consensus 708 ~~d~~~~~~s~f~~e~~~~-~~il~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~-~~ 785 (888)
..+++... +|+++++. +.+...+.+|+++|||||++|+|+.....+ ..++..++++.+.++|++||+++... ++
T Consensus 93 ~~~~l~~~---lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l-~~~l~~~~~~~~~tiii~sH~~~~~~~~~ 168 (178)
T cd03229 93 VLENIALG---LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREV-RALLKSLQAQLGITVVLVTHDLDEAARLA 168 (178)
T ss_pred HHHheeec---CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhc
Confidence 12221111 66655555 444455889999999999999999888887 66667776633789999999987765 56
Q ss_pred hh
Q 002722 786 HE 787 (888)
Q Consensus 786 ~~ 787 (888)
++
T Consensus 169 d~ 170 (178)
T cd03229 169 DR 170 (178)
T ss_pred CE
Confidence 65
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.3e-17 Score=175.71 Aligned_cols=152 Identities=14% Similarity=0.112 Sum_probs=107.5
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh------------------------hcCccccccc--c--c
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA------------------------QVGSFVPCDR--A--S 695 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a------------------------~~g~~vp~~~--~--~ 695 (888)
.+.++++|++.+|++++|+||||||||||+|+++++.... +.-.|+++.. . .
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~ 99 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE 99 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhccc
Confidence 4778999999999999999999999999999998753211 0112444332 0 0
Q ss_pred ccH---------------------HHHHHHhcCCc-hhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhh
Q 002722 696 ISV---------------------RDCIFARVGAG-DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYD 752 (888)
Q Consensus 696 ~~~---------------------~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~ 752 (888)
.++ +..++..+|.. +........+|+++++...+.+ .+.+|+++|||||++|+|+..
T Consensus 100 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~ 179 (288)
T PRK13643 100 ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKA 179 (288)
T ss_pred chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHH
Confidence 111 12334445654 3345556677777766655554 478999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEE
Q 002722 753 GFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 753 ~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
...+ ..+++.+++ .|.++|++||+++.+ .++++ +..+.++++.
T Consensus 180 ~~~l-~~~l~~l~~-~g~til~vtHd~~~~~~~~dr---------i~~l~~G~i~ 223 (288)
T PRK13643 180 RIEM-MQLFESIHQ-SGQTVVLVTHLMDDVADYADY---------VYLLEKGHII 223 (288)
T ss_pred HHHH-HHHHHHHHH-CCCEEEEEecCHHHHHHhCCE---------EEEEECCEEE
Confidence 8887 667777776 589999999998866 67887 5555555554
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.3e-17 Score=172.10 Aligned_cols=143 Identities=17% Similarity=0.151 Sum_probs=101.2
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh--------------------hhcCcccccccc---cccHH
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRA---SISVR 699 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~--------------------a~~g~~vp~~~~---~~~~~ 699 (888)
..+.++++|++.+|++++|+||||||||||||+++++... .+.-.|+|++.. .+++.
T Consensus 15 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 94 (255)
T PRK11231 15 KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVR 94 (255)
T ss_pred EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHH
Confidence 3567799999999999999999999999999999875311 011124444321 11111
Q ss_pred -------------------------HHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhH
Q 002722 700 -------------------------DCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDG 753 (888)
Q Consensus 700 -------------------------d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~ 753 (888)
..++..+|..+........+|+++++...+++ .+.+|+++|||||++|+|+...
T Consensus 95 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~ 174 (255)
T PRK11231 95 ELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQ 174 (255)
T ss_pred HHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 22344455555555566778877766655444 5789999999999999999888
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 754 FGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
..+ ..++..+.+ .|.++|++||+.+.. +++++
T Consensus 175 ~~l-~~~l~~l~~-~~~tiii~tH~~~~~~~~~d~ 207 (255)
T PRK11231 175 VEL-MRLMRELNT-QGKTVVTVLHDLNQASRYCDH 207 (255)
T ss_pred HHH-HHHHHHHHH-CCCEEEEEECCHHHHHHhcCE
Confidence 888 555666665 489999999998764 57776
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.2e-17 Score=180.35 Aligned_cols=155 Identities=15% Similarity=0.101 Sum_probs=112.2
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh----------------------------hcCcccccccc
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA----------------------------QVGSFVPCDRA 694 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a----------------------------~~g~~vp~~~~ 694 (888)
..+.++++|++.+|++++|+||||||||||||+++++.... +.-.|+|+...
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 45678999999999999999999999999999997653210 01123333321
Q ss_pred c---ccHH---------------------HHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCC
Q 002722 695 S---ISVR---------------------DCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTS 749 (888)
Q Consensus 695 ~---~~~~---------------------d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd 749 (888)
- .++. ..++.++|+.+........+|++|++...+.+ .+.+|+++|||||++|+|
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD 196 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALD 196 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCC
Confidence 1 1111 23455567666666667788888887766655 478999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEEE
Q 002722 750 TYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSA 807 (888)
Q Consensus 750 ~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (888)
+.....+ ...+..+.++.+.++||+||+++.+ +++++ ...+.++++..
T Consensus 197 ~~~r~~l-~~~L~~l~~~~~~TII~iTHdl~e~~~l~Dr---------I~vl~~G~iv~ 245 (382)
T TIGR03415 197 PLIRTQL-QDELLELQAKLNKTIIFVSHDLDEALKIGNR---------IAIMEGGRIIQ 245 (382)
T ss_pred HHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE---------EEEEECCEEEE
Confidence 9999988 5555556553589999999998765 68887 66667766643
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-16 Score=170.36 Aligned_cols=141 Identities=14% Similarity=0.110 Sum_probs=100.5
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh-----h----------------------cCccccccccc-
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA-----Q----------------------VGSFVPCDRAS- 695 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a-----~----------------------~g~~vp~~~~~- 695 (888)
.+.++++|++.+|++++|+||||||||||||+++++.... . .-.|+|.....
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 94 (247)
T TIGR00972 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPF 94 (247)
T ss_pred eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccC
Confidence 4677999999999999999999999999999998765321 0 01233332210
Q ss_pred -ccHHH----------------------HHHHhcCCc----hhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCC
Q 002722 696 -ISVRD----------------------CIFARVGAG----DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRG 747 (888)
Q Consensus 696 -~~~~d----------------------~i~~~~~~~----d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~g 747 (888)
.++.+ .++..+|.. +.+......+|+++++...+.+ .+.+|+++|||||++|
T Consensus 95 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~ 174 (247)
T TIGR00972 95 PMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSA 174 (247)
T ss_pred CCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 11112 233445554 4455556778877777655555 4789999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
+|+.....+ ..++..+.+ ++++|++||+++.. .++++
T Consensus 175 LD~~~~~~l-~~~l~~~~~--~~tiiivsH~~~~~~~~~d~ 212 (247)
T TIGR00972 175 LDPIATGKI-EELIQELKK--KYTIVIVTHNMQQAARISDR 212 (247)
T ss_pred CCHHHHHHH-HHHHHHHHh--cCeEEEEecCHHHHHHhCCE
Confidence 999888888 666677765 48999999998754 67776
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.4e-17 Score=162.72 Aligned_cols=130 Identities=13% Similarity=0.067 Sum_probs=91.2
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhcC----------cccccccccccHHHHHHHhcCCchhhh
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVG----------SFVPCDRASISVRDCIFARVGAGDCQL 713 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~g----------~~vp~~~~~~~~~d~i~~~~~~~d~~~ 713 (888)
.+.++++|++.+|++++|+||||||||||+|+++++.... .| .|+|++..-. .....+++.
T Consensus 15 ~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~~~~~i~~~~q~~~~~--------~~tv~~nl~ 85 (166)
T cd03223 15 VLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWG-SGRIGMPEGEDLLFLPQRPYLP--------LGTLREQLI 85 (166)
T ss_pred eeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCCceEEEECCCCccc--------cccHHHHhh
Confidence 4667899999999999999999999999999998864321 12 2445443211 112233332
Q ss_pred h-ccchhHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 714 R-GVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 714 ~-~~s~f~~e~~~~~~il-~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
. ....+|+++++...++ ..+.+|+++|||||++|+|+.....+ ..++.. .+.++|++||++++...+++
T Consensus 86 ~~~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l-~~~l~~----~~~tiiivsh~~~~~~~~d~ 156 (166)
T cd03223 86 YPWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRL-YQLLKE----LGITVISVGHRPSLWKFHDR 156 (166)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHH-HHHHHH----hCCEEEEEeCChhHHhhCCE
Confidence 2 3456776666554444 45789999999999999999887777 333333 26899999999887666665
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.4e-17 Score=181.57 Aligned_cols=152 Identities=16% Similarity=0.117 Sum_probs=111.7
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh-------------------------hhcCccccccccc---
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-------------------------AQVGSFVPCDRAS--- 695 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~-------------------------a~~g~~vp~~~~~--- 695 (888)
...++++|++.+|++++|+||||||||||||+++++... .++ .|+|+...-
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~i-gyv~Q~~~l~~~ 120 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKI-AMVFQSFALMPH 120 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCE-EEEECCCcCCCC
Confidence 456789999999999999999999999999999865311 012 244443211
Q ss_pred ccH---------------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhH
Q 002722 696 ISV---------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDG 753 (888)
Q Consensus 696 ~~~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~ 753 (888)
.++ ++.++..+|+.+......+.+|++++|...+++ .+.+|+++|||||++|+|+...
T Consensus 121 ~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r 200 (400)
T PRK10070 121 MTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIR 200 (400)
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHH
Confidence 111 123456677766667777888888877766655 4789999999999999999988
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEE
Q 002722 754 FGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
..+ +.++..+.++.|+++|++||+.+.+ .++++ +..+.++++.
T Consensus 201 ~~l-~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dr---------i~vL~~G~i~ 244 (400)
T PRK10070 201 TEM-QDELVKLQAKHQRTIVFISHDLDEAMRIGDR---------IAIMQNGEVV 244 (400)
T ss_pred HHH-HHHHHHHHHHCCCeEEEEECCHHHHHHhCCE---------EEEEECCEEE
Confidence 888 6666666543589999999998765 57777 5556666654
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.3e-17 Score=166.47 Aligned_cols=139 Identities=14% Similarity=0.107 Sum_probs=100.5
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh------------------hhcCcccccccc---cccH---
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM------------------AQVGSFVPCDRA---SISV--- 698 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~------------------a~~g~~vp~~~~---~~~~--- 698 (888)
..+.++++|++.+|++++|+||||||||||+++++++... .++ .|+|.... ..++
T Consensus 15 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~tv~~~ 93 (207)
T PRK13539 15 RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEAC-HYLGHRNAMKPALTVAEN 93 (207)
T ss_pred eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhc-EEecCCCcCCCCCcHHHH
Confidence 3577899999999999999999999999999999875321 112 23432211 1111
Q ss_pred --------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHH
Q 002722 699 --------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEH 763 (888)
Q Consensus 699 --------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~il~~ 763 (888)
+..++..+|..+........+|+++++...+++ .+.+|+++|||||++|+|+.....+ +.++..
T Consensus 94 l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l-~~~l~~ 172 (207)
T PRK13539 94 LEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALF-AELIRA 172 (207)
T ss_pred HHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHHHHH
Confidence 223455566655555566778877766655554 4789999999999999999988888 666666
Q ss_pred HHhcCCCeEEEEecChhHHHH
Q 002722 764 LVEEIRAPTLFATHFHELTAL 784 (888)
Q Consensus 764 l~~~~~~~~l~~TH~~~l~~~ 784 (888)
+.+ .|.++|++||+.+....
T Consensus 173 ~~~-~~~tiii~sH~~~~~~~ 192 (207)
T PRK13539 173 HLA-QGGIVIAATHIPLGLPG 192 (207)
T ss_pred HHH-CCCEEEEEeCCchhhcc
Confidence 666 48999999999876553
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-16 Score=173.58 Aligned_cols=142 Identities=15% Similarity=0.092 Sum_probs=101.4
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh------------------------hcCccccccc----cc
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA------------------------QVGSFVPCDR----AS 695 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a------------------------~~g~~vp~~~----~~ 695 (888)
.+.++++|++.+|++++|+||||||||||||+++++.... +.-.|+|+.. ..
T Consensus 21 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 100 (280)
T PRK13649 21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFE 100 (280)
T ss_pred ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhcc
Confidence 4677999999999999999999999999999998753110 1113555442 11
Q ss_pred ccHHH---------------------HHHHhcCCch-hhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhh
Q 002722 696 ISVRD---------------------CIFARVGAGD-CQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYD 752 (888)
Q Consensus 696 ~~~~d---------------------~i~~~~~~~d-~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~ 752 (888)
.++.+ .++..+|..+ ......+.+|+++++...+++ .+.+|+++|||||++|+|+..
T Consensus 101 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~ 180 (280)
T PRK13649 101 ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKG 180 (280)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 11111 2334456542 345556778877777655554 578999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 753 GFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 753 ~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
...+ ..++..+.+ .|.++|++||+++.. .++++
T Consensus 181 ~~~l-~~~l~~~~~-~~~tiiivsH~~~~~~~~~d~ 214 (280)
T PRK13649 181 RKEL-MTLFKKLHQ-SGMTIVLVTHLMDDVANYADF 214 (280)
T ss_pred HHHH-HHHHHHHHH-CCCEEEEEeccHHHHHHhCCE
Confidence 8887 566666665 489999999998765 57776
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-16 Score=154.93 Aligned_cols=156 Identities=19% Similarity=0.217 Sum_probs=121.9
Q ss_pred CcccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHh---------------------------hhh---------
Q 002722 641 WVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL---------------------------MAQ--------- 684 (888)
Q Consensus 641 ~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~---------------------------~a~--------- 684 (888)
+.+.|.+++++++++|.+..|+|||||||||||-+++.+.- +.|
T Consensus 12 ~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlT 91 (252)
T COG4604 12 GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLT 91 (252)
T ss_pred CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeE
Confidence 44678889999999999999999999999999999875432 111
Q ss_pred ------cCccccccccccc-----HHHHHHHhcCCchhhhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhh
Q 002722 685 ------VGSFVPCDRASIS-----VRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYD 752 (888)
Q Consensus 685 ------~g~~vp~~~~~~~-----~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~slvllDEp~~gtd~~~ 752 (888)
.|- .|-...++. .+++.+..+.+.+-..+.+..+|++.+|.+.+... +.+.+.|+||||.++||...
T Consensus 92 V~dLv~FGR-fPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkH 170 (252)
T COG4604 92 VRDLVGFGR-FPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKH 170 (252)
T ss_pred HHHHhhcCC-CcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHH
Confidence 111 133333333 23345566777777777788899999999888765 67889999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEecChhHHH-HhhhccccccccccccEeEEEEEE
Q 002722 753 GFGLAWAICEHLVEEIRAPTLFATHFHELTA-LAHENANEFNTKQMVGVANYHVSA 807 (888)
Q Consensus 753 ~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~-~~~~~~~~~~~~~~~~v~~~~~~~ 807 (888)
..++ +.+++.++++.|.+++++-||..++. ++|+ ...++++.+..
T Consensus 171 sv~i-Mk~Lrrla~el~KtiviVlHDINfAS~YsD~---------IVAlK~G~vv~ 216 (252)
T COG4604 171 SVQI-MKILRRLADELGKTIVVVLHDINFASCYSDH---------IVALKNGKVVK 216 (252)
T ss_pred HHHH-HHHHHHHHHHhCCeEEEEEecccHHHhhhhh---------eeeecCCEEEe
Confidence 9999 77888898878999999999999885 6776 66777776644
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-16 Score=171.14 Aligned_cols=142 Identities=15% Similarity=0.103 Sum_probs=98.8
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh---------------------------hhcCccccccccc
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM---------------------------AQVGSFVPCDRAS 695 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~---------------------------a~~g~~vp~~~~~ 695 (888)
..+.++++|++.+|++++|+||||||||||+|+++++... .+.-.|+|....-
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 104 (258)
T PRK14268 25 KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNP 104 (258)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCcc
Confidence 3577899999999999999999999999999999876421 0111234433211
Q ss_pred --ccHHH---------------------HHHHhcCCc----hhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCC
Q 002722 696 --ISVRD---------------------CIFARVGAG----DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRG 747 (888)
Q Consensus 696 --~~~~d---------------------~i~~~~~~~----d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~g 747 (888)
.++.+ .++..++.. +.+......+|+++++...+.+ .+.+|+++|||||++|
T Consensus 105 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~ 184 (258)
T PRK14268 105 FPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSA 184 (258)
T ss_pred CcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 11111 233333331 2233445677777766655554 4789999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
+|+.....+ +.+++.+.+ ++++|++||+.+.. +++++
T Consensus 185 LD~~~~~~l-~~~l~~l~~--~~tiiivsH~~~~~~~~~d~ 222 (258)
T PRK14268 185 LDPISTARI-EDLIMNLKK--DYTIVIVTHNMQQAARISDY 222 (258)
T ss_pred cCHHHHHHH-HHHHHHHhh--CCEEEEEECCHHHHHHhCCE
Confidence 999988888 666666654 78999999998765 57776
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-16 Score=165.10 Aligned_cols=143 Identities=17% Similarity=0.119 Sum_probs=100.4
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh-------------------hcCcccccccc---cccH--
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA-------------------QVGSFVPCDRA---SISV-- 698 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a-------------------~~g~~vp~~~~---~~~~-- 698 (888)
..+.++++|++.+|++++|+||||+|||||+++++++.... +.-.|+|+... ..++
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 92 (201)
T cd03231 13 RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLE 92 (201)
T ss_pred ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHH
Confidence 35678999999999999999999999999999998753110 01123332221 1111
Q ss_pred -------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHH
Q 002722 699 -------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHL 764 (888)
Q Consensus 699 -------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l 764 (888)
++.++..+|..+........+|+++++...+.+ .+.+|+++|||||++|+|+.....+ ..++..+
T Consensus 93 ~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l-~~~l~~~ 171 (201)
T cd03231 93 NLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARF-AEAMAGH 171 (201)
T ss_pred HHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHH
Confidence 234456667665555566778877766655554 4789999999999999999988888 5566666
Q ss_pred HhcCCCeEEEEecChh-HHHHhhh
Q 002722 765 VEEIRAPTLFATHFHE-LTALAHE 787 (888)
Q Consensus 765 ~~~~~~~~l~~TH~~~-l~~~~~~ 787 (888)
.+ .|+++|++||+.+ +...+++
T Consensus 172 ~~-~g~tiii~sH~~~~~~~~~~~ 194 (201)
T cd03231 172 CA-RGGMVVLTTHQDLGLSEAGAR 194 (201)
T ss_pred Hh-CCCEEEEEecCchhhhhccce
Confidence 65 5899999999854 4444443
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.5e-17 Score=173.07 Aligned_cols=143 Identities=15% Similarity=0.017 Sum_probs=100.2
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh--------------------hcCcccccccc-----ccc-
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA--------------------QVGSFVPCDRA-----SIS- 697 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a--------------------~~g~~vp~~~~-----~~~- 697 (888)
.+.++++|++.+|++++|+||||||||||||+++++.... +.-.|+|.... ...
T Consensus 27 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv 106 (267)
T PRK15112 27 EAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRI 106 (267)
T ss_pred ceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhH
Confidence 5778999999999999999999999999999998764210 11124443321 000
Q ss_pred ---------------------HHHHHHHhcCCc-hhhhhccchhHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhHH
Q 002722 698 ---------------------VRDCIFARVGAG-DCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYDGF 754 (888)
Q Consensus 698 ---------------------~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il-~~~~~~slvllDEp~~gtd~~~~~ 754 (888)
.+..++.++|+. +......+.+|+++++...+. ..+.+|+++|||||++|+|+....
T Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~ 186 (267)
T PRK15112 107 SQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRS 186 (267)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHH
Confidence 112345556663 333444567777776665554 457899999999999999998877
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecChhHHH-Hhhh
Q 002722 755 GLAWAICEHLVEEIRAPTLFATHFHELTA-LAHE 787 (888)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~~l~~-~~~~ 787 (888)
.+ ..++..+.+..|.++|++||+.+... ++++
T Consensus 187 ~l-~~~l~~~~~~~g~tviivsH~~~~~~~~~d~ 219 (267)
T PRK15112 187 QL-INLMLELQEKQGISYIYVTQHLGMMKHISDQ 219 (267)
T ss_pred HH-HHHHHHHHHHcCcEEEEEeCCHHHHHHhcCE
Confidence 77 55666665534889999999987664 6776
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.2e-17 Score=163.00 Aligned_cols=135 Identities=15% Similarity=0.116 Sum_probs=92.1
Q ss_pred ccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhcC----------------------cccccccccccHHHHH
Q 002722 645 IPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVG----------------------SFVPCDRASISVRDCI 702 (888)
Q Consensus 645 v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~g----------------------~~vp~~~~~~~~~d~i 702 (888)
+.++++|++.+|++++|+||||||||||+|+++++.... .| .|+|.+... ..+
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~----~~~ 89 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPA-SGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKR----EGL 89 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEECCccCHHHHHhCCeEEecCCccc----Ccc
Confidence 788999999999999999999999999999998764321 12 112211000 011
Q ss_pred HHhcCCchhhhhccchhHHHHHHHHH-HHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhH
Q 002722 703 FARVGAGDCQLRGVSTFMQEMLETAS-ILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHEL 781 (888)
Q Consensus 703 ~~~~~~~d~~~~~~s~f~~e~~~~~~-il~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l 781 (888)
+..+...+++.... .+|+++++... +...+.+|+++|||||++|+|+.....+ ..++..+.+ .+.++|++||+++.
T Consensus 90 ~~~~t~~e~l~~~~-~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l-~~~l~~~~~-~~~tiii~sh~~~~ 166 (182)
T cd03215 90 VLDLSVAENIALSS-LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEI-YRLIRELAD-AGKAVLLISSELDE 166 (182)
T ss_pred cCCCcHHHHHHHHh-hcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHH-HHHHHHHHH-CCCEEEEEeCCHHH
Confidence 22222333332211 16666665544 4445789999999999999999888888 566666665 48999999999764
Q ss_pred H-HHhhh
Q 002722 782 T-ALAHE 787 (888)
Q Consensus 782 ~-~~~~~ 787 (888)
. +++++
T Consensus 167 ~~~~~d~ 173 (182)
T cd03215 167 LLGLCDR 173 (182)
T ss_pred HHHhCCE
Confidence 4 56765
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-16 Score=173.47 Aligned_cols=142 Identities=16% Similarity=0.117 Sum_probs=102.5
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh----------------------hhcCccccccc----cccc
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----------------------AQVGSFVPCDR----ASIS 697 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~----------------------a~~g~~vp~~~----~~~~ 697 (888)
.+.++++|++.+|++++|+||||||||||+|+++++... .+.-.|+|+.. ....
T Consensus 16 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t 95 (275)
T PRK13639 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPT 95 (275)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhcccc
Confidence 356789999999999999999999999999999865311 01112445442 1111
Q ss_pred H---------------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHH
Q 002722 698 V---------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFG 755 (888)
Q Consensus 698 ~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~ 755 (888)
+ +..++.++|+.+........+|+++++...+.+ .+.+|+++|||||++|+|+.....
T Consensus 96 v~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~ 175 (275)
T PRK13639 96 VEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQ 175 (275)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHH
Confidence 1 123445556655555566778877777655554 478999999999999999999888
Q ss_pred HHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 756 LAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 756 i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
+ ..++..+.+ .|.++|++||+.+.. +++++
T Consensus 176 l-~~~l~~l~~-~~~til~vtH~~~~~~~~~d~ 206 (275)
T PRK13639 176 I-MKLLYDLNK-EGITIIISTHDVDLVPVYADK 206 (275)
T ss_pred H-HHHHHHHHH-CCCEEEEEecCHHHHHHhCCE
Confidence 8 556666765 489999999998865 47776
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.8e-17 Score=162.78 Aligned_cols=133 Identities=15% Similarity=0.084 Sum_probs=89.7
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhcCcc-ccccc-cc---------ccHH---HHHHHhcCCc
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSF-VPCDR-AS---------ISVR---DCIFARVGAG 709 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~g~~-vp~~~-~~---------~~~~---d~i~~~~~~~ 709 (888)
.+.++++|++.+|++++|+||||||||||+|+++++.... .|.. +.... .. ++++ ..++. ....
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~~ 93 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT-SGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTIR 93 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC-CCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-chHH
Confidence 4677899999999999999999999999999998865322 2211 11100 00 0000 00111 1122
Q ss_pred hhhhhccchhHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 710 DCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 710 d~~~~~~s~f~~e~~~~~~il-~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
|++ +|+++++...+. ..+.+|+++|||||++|+|+.....+ ..++..+.+ ++++|++||+++....+++
T Consensus 94 e~l------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l-~~~l~~~~~--~~tii~~sh~~~~~~~~d~ 163 (171)
T cd03228 94 ENI------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALI-LEALRALAK--GKTVIVIAHRLSTIRDADR 163 (171)
T ss_pred HHh------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHH-HHHHHHhcC--CCEEEEEecCHHHHHhCCE
Confidence 222 565555554444 45789999999999999999888887 666666653 6899999999887765655
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2e-16 Score=169.28 Aligned_cols=141 Identities=16% Similarity=0.119 Sum_probs=97.6
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHh--h--hhcC-----------------------ccccccccc-
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL--M--AQVG-----------------------SFVPCDRAS- 695 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~--~--a~~g-----------------------~~vp~~~~~- 695 (888)
.+.++++|++.+|++++|+||||||||||||+++++.- . ...| .|+|+....
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 99 (253)
T PRK14242 20 QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPF 99 (253)
T ss_pred eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCC
Confidence 57889999999999999999999999999999997631 1 0111 234433211
Q ss_pred -ccHHHHH----------------------HHhcCCch----hhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCC
Q 002722 696 -ISVRDCI----------------------FARVGAGD----CQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRG 747 (888)
Q Consensus 696 -~~~~d~i----------------------~~~~~~~d----~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~g 747 (888)
.++.+.+ +..+|..+ .+......+|+++++...+.+ .+.+|+++|||||++|
T Consensus 100 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~ 179 (253)
T PRK14242 100 PKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASA 179 (253)
T ss_pred cCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 1222221 22233321 223445678877777655554 4789999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
+|+.....+ ..++..+.+ +.++|++||+.+.. +++++
T Consensus 180 LD~~~~~~l-~~~l~~~~~--~~tvii~tH~~~~~~~~~d~ 217 (253)
T PRK14242 180 LDPIATQKI-EELIHELKA--RYTIIIVTHNMQQAARVSDV 217 (253)
T ss_pred CCHHHHHHH-HHHHHHHhc--CCeEEEEEecHHHHHHhCCE
Confidence 999988888 556666653 68999999998765 57776
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-16 Score=168.03 Aligned_cols=143 Identities=16% Similarity=0.086 Sum_probs=103.5
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhh------------------cCccccccccc---ccH----
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ------------------VGSFVPCDRAS---ISV---- 698 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~------------------~g~~vp~~~~~---~~~---- 698 (888)
.+.++++|++.+|++++|+||||+|||||+++++++..... .-.|+|.+... .++
T Consensus 14 ~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl 93 (232)
T cd03300 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENI 93 (232)
T ss_pred eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHH
Confidence 57789999999999999999999999999999987642210 11233333211 111
Q ss_pred -----------------HHHHHHhcCCchhhhhccchhHHHHHHHHHH-HHhCCCCcEEEEeCCCCCCChhhHHHHHHHH
Q 002722 699 -----------------RDCIFARVGAGDCQLRGVSTFMQEMLETASI-LKGATDRSLIIIDELGRGTSTYDGFGLAWAI 760 (888)
Q Consensus 699 -----------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~i-l~~~~~~slvllDEp~~gtd~~~~~~i~~~i 760 (888)
++.++.++|..+.+......+|+++++...+ ...+.+|+++|||||++|+|+.....+ +.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l-~~~ 172 (232)
T cd03300 94 AFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDM-QLE 172 (232)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH-HHH
Confidence 1234555677666666667788766665444 445889999999999999999988888 666
Q ss_pred HHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 761 CEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 761 l~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
+..+.++.|+++|++||+.+.. +++++
T Consensus 173 l~~~~~~~~~tiii~sh~~~~~~~~~d~ 200 (232)
T cd03300 173 LKRLQKELGITFVFVTHDQEEALTMSDR 200 (232)
T ss_pred HHHHHHHcCCEEEEEeCCHHHHHHhcCE
Confidence 6677653489999999998764 67776
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-16 Score=170.51 Aligned_cols=143 Identities=18% Similarity=0.096 Sum_probs=100.7
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh-----------------------------hcCcccccccc
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA-----------------------------QVGSFVPCDRA 694 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a-----------------------------~~g~~vp~~~~ 694 (888)
.+.++++|++.+|++++|+||||||||||||+++++.... +.-.|+|....
T Consensus 17 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (253)
T TIGR02323 17 KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPR 96 (253)
T ss_pred eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcc
Confidence 4678999999999999999999999999999998653110 01134443321
Q ss_pred -----cccH----------------------HHHHHHhcCCc-hhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCC
Q 002722 695 -----SISV----------------------RDCIFARVGAG-DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELG 745 (888)
Q Consensus 695 -----~~~~----------------------~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~ 745 (888)
.... ++.++.++|.. +......+.+|+++++...+.+ .+.+|+++|||||+
T Consensus 97 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~ 176 (253)
T TIGR02323 97 DGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPT 176 (253)
T ss_pred cccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 0111 12234555664 3455566778877766655554 58899999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHH-Hhhh
Q 002722 746 RGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTA-LAHE 787 (888)
Q Consensus 746 ~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~-~~~~ 787 (888)
+|+|+.....+ ..++..+.++.|.++|++||+.+... ++++
T Consensus 177 ~~LD~~~~~~l-~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~ 218 (253)
T TIGR02323 177 GGLDVSVQARL-LDLLRGLVRDLGLAVIIVTHDLGVARLLAQR 218 (253)
T ss_pred ccCCHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhcCE
Confidence 99999988888 55555555435899999999987764 6766
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-16 Score=166.37 Aligned_cols=143 Identities=12% Similarity=0.049 Sum_probs=101.6
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh-----------------hcCcccccccc---cccHHH--
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA-----------------QVGSFVPCDRA---SISVRD-- 700 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a-----------------~~g~~vp~~~~---~~~~~d-- 700 (888)
..+.++++|++.+|++++|+||||||||||+|+++++.... ..-.|+|.... .+++.+
T Consensus 24 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l 103 (214)
T PRK13543 24 EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENL 103 (214)
T ss_pred ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHH
Confidence 35788999999999999999999999999999998753210 11124443321 112222
Q ss_pred ----------------HHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHH
Q 002722 701 ----------------CIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEH 763 (888)
Q Consensus 701 ----------------~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~il~~ 763 (888)
.++..++..+........+|+++++...+.+ .+.+|+++|||||++|+|+.....+ ..++..
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l-~~~l~~ 182 (214)
T PRK13543 104 HFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLV-NRMISA 182 (214)
T ss_pred HHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHHHHH
Confidence 2344455554455556677777666655544 5789999999999999999888877 667776
Q ss_pred HHhcCCCeEEEEecChhHH-HHhhh
Q 002722 764 LVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 764 l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
+.+ .|.++|++||+++.. +++++
T Consensus 183 ~~~-~~~tiii~sH~~~~~~~~~~~ 206 (214)
T PRK13543 183 HLR-GGGAALVTTHGAYAAPPVRTR 206 (214)
T ss_pred HHh-CCCEEEEEecChhhhhhhcce
Confidence 666 589999999998765 46654
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-16 Score=169.51 Aligned_cols=142 Identities=15% Similarity=0.080 Sum_probs=97.4
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh--------------------hcCccccccccc--ccHHH
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA--------------------QVGSFVPCDRAS--ISVRD 700 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a--------------------~~g~~vp~~~~~--~~~~d 700 (888)
..+.++++|++.+|++++|+||||||||||+|+++++.... +.-.|+|....- .++.+
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~ 94 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRD 94 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHH
Confidence 35678999999999999999999999999999998763211 111244443211 11111
Q ss_pred HH---------------HHhcCCch-----------hhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhH
Q 002722 701 CI---------------FARVGAGD-----------CQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDG 753 (888)
Q Consensus 701 ~i---------------~~~~~~~d-----------~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~ 753 (888)
.+ ....++.+ .+......+|+++++...+++ .+.+|+++|||||++|+|+...
T Consensus 95 nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~ 174 (237)
T cd03252 95 NIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESE 174 (237)
T ss_pred HhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHH
Confidence 11 11122221 223345678877777655554 4789999999999999999988
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 754 FGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
..+ ..++..+.+ |+++|++||+++....+++
T Consensus 175 ~~l-~~~l~~~~~--~~tiii~sH~~~~~~~~d~ 205 (237)
T cd03252 175 HAI-MRNMHDICA--GRTVIIIAHRLSTVKNADR 205 (237)
T ss_pred HHH-HHHHHHhcC--CCEEEEEeCCHHHHHhCCE
Confidence 888 555666653 8899999999987766665
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-16 Score=168.14 Aligned_cols=139 Identities=16% Similarity=0.158 Sum_probs=99.5
Q ss_pred CccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh------------------hcCcccccccc---cccH--------
Q 002722 648 DCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA------------------QVGSFVPCDRA---SISV-------- 698 (888)
Q Consensus 648 ~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a------------------~~g~~vp~~~~---~~~~-------- 698 (888)
+++|++.+|++++|+||||||||||+|+++++.... ....|+|+... ..++
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 96 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGL 96 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhccc
Confidence 788999999999999999999999999998753210 01124443321 1111
Q ss_pred -------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHH
Q 002722 699 -------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHL 764 (888)
Q Consensus 699 -------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l 764 (888)
+..++.++|..+.+......+|+++++...+.+ .+.+|+++|||||++|+|+.....+ ..++..+
T Consensus 97 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~-~~~l~~~ 175 (232)
T PRK10771 97 NPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEM-LTLVSQV 175 (232)
T ss_pred ccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHHHHHH
Confidence 223455566666566667788877776655554 5789999999999999999888888 5566666
Q ss_pred HhcCCCeEEEEecChhHH-HHhhh
Q 002722 765 VEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 765 ~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
.+..|+++|++||+.+.. +++++
T Consensus 176 ~~~~~~tiii~sH~~~~~~~~~d~ 199 (232)
T PRK10771 176 CQERQLTLLMVSHSLEDAARIAPR 199 (232)
T ss_pred HHhcCCEEEEEECCHHHHHHhCCE
Confidence 543489999999998865 56776
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.3e-16 Score=159.83 Aligned_cols=153 Identities=18% Similarity=0.116 Sum_probs=109.4
Q ss_pred cCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhh----cCcccccccc-----cc--------------cHHH--
Q 002722 646 PNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ----VGSFVPCDRA-----SI--------------SVRD-- 700 (888)
Q Consensus 646 ~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~----~g~~vp~~~~-----~~--------------~~~d-- 700 (888)
-.|++|++.+|.+++++|||||||||+||++.++..+.. ++.++|.... .+ +..|
T Consensus 40 Vqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~ 119 (325)
T COG4586 40 VQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSL 119 (325)
T ss_pred hheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhH
Confidence 368999999999999999999999999999988765432 3455564421 11 1111
Q ss_pred -------------------HHHHhcCCchhhhhccchhHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhHHHHHHHH
Q 002722 701 -------------------CIFARVGAGDCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYDGFGLAWAI 760 (888)
Q Consensus 701 -------------------~i~~~~~~~d~~~~~~s~f~~e~~~~~~il-~~~~~~slvllDEp~~gtd~~~~~~i~~~i 760 (888)
.+-.-++....+......+|-+.+..+.++ ....+|.+++|||||-|||......|...+
T Consensus 120 ~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Fl 199 (325)
T COG4586 120 EVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFL 199 (325)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHH
Confidence 111223444445555566665544444444 447899999999999999999999996555
Q ss_pred HHHHHhcCCCeEEEEecCh-hHHHHhhhccccccccccccEeEEEEEEE
Q 002722 761 CEHLVEEIRAPTLFATHFH-ELTALAHENANEFNTKQMVGVANYHVSAH 808 (888)
Q Consensus 761 l~~l~~~~~~~~l~~TH~~-~l~~~~~~~~~~~~~~~~~~v~~~~~~~~ 808 (888)
-++-. +.++||+.+||++ +++++|++ +-.+..+++.++
T Consensus 200 ke~n~-~~~aTVllTTH~~~di~~lc~r---------v~~I~~Gqlv~d 238 (325)
T COG4586 200 KEYNE-ERQATVLLTTHIFDDIATLCDR---------VLLIDQGQLVFD 238 (325)
T ss_pred HHHHH-hhCceEEEEecchhhHHHhhhh---------eEEeeCCcEeec
Confidence 55544 4799999999995 68899999 777888887764
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-16 Score=176.38 Aligned_cols=153 Identities=16% Similarity=0.028 Sum_probs=112.2
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh------------------------h----hcCcccccccc-
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM------------------------A----QVGSFVPCDRA- 694 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~------------------------a----~~g~~vp~~~~- 694 (888)
.+.++++|++.+|++++|+||||||||||+|+++++.-. . +.-.++|++..
T Consensus 21 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 100 (326)
T PRK11022 21 RAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMT 100 (326)
T ss_pred EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchh
Confidence 467899999999999999999999999999999876421 0 01134554421
Q ss_pred ----cccH----------------------HHHHHHhcCCch---hhhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCC
Q 002722 695 ----SISV----------------------RDCIFARVGAGD---CQLRGVSTFMQEMLETASILKG-ATDRSLIIIDEL 744 (888)
Q Consensus 695 ----~~~~----------------------~d~i~~~~~~~d---~~~~~~s~f~~e~~~~~~il~~-~~~~slvllDEp 744 (888)
.+.+ +..++.++|+.+ .+......+|++|+|...|.++ +.+|+++|+|||
T Consensus 101 ~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEP 180 (326)
T PRK11022 101 SLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEP 180 (326)
T ss_pred hcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 0011 123456667653 3455677889888887666654 789999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEE
Q 002722 745 GRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 745 ~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
|+|+|+.....+ ..++..+.++.|.++|++||+++++ +++++ +..+..+++.
T Consensus 181 ts~LD~~~~~~i-l~lL~~l~~~~g~til~iTHdl~~~~~~adr---------i~vm~~G~iv 233 (326)
T PRK11022 181 TTALDVTIQAQI-IELLLELQQKENMALVLITHDLALVAEAAHK---------IIVMYAGQVV 233 (326)
T ss_pred CCCCCHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE---------EEEEECCEEE
Confidence 999999988888 6666777654689999999998876 57887 5556666654
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-16 Score=166.38 Aligned_cols=142 Identities=11% Similarity=0.049 Sum_probs=99.0
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh--------------------hcCcccccccccc--cH--
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA--------------------QVGSFVPCDRASI--SV-- 698 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a--------------------~~g~~vp~~~~~~--~~-- 698 (888)
..+.++++|++.+|++++|+||||||||||+|+++++.... +.-.|+|....-+ ++
T Consensus 17 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~e 96 (221)
T cd03244 17 PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRS 96 (221)
T ss_pred cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHHH
Confidence 36788999999999999999999999999999998753111 1112444332111 11
Q ss_pred ------------HHHHHHhcCCchhhh-----------hccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHH
Q 002722 699 ------------RDCIFARVGAGDCQL-----------RGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGF 754 (888)
Q Consensus 699 ------------~d~i~~~~~~~d~~~-----------~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~ 754 (888)
+...+.+++..+.+. ...+.+|+++++...+++ .+.+|+++|||||++|+|+....
T Consensus 97 nl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~ 176 (221)
T cd03244 97 NLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDA 176 (221)
T ss_pred HhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHH
Confidence 112334445444332 345677776666655554 57899999999999999998888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 755 GLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
.+ +.+++.+.+ +.++|++||+.+....+++
T Consensus 177 ~l-~~~l~~~~~--~~tii~~sh~~~~~~~~d~ 206 (221)
T cd03244 177 LI-QKTIREAFK--DCTVLTIAHRLDTIIDSDR 206 (221)
T ss_pred HH-HHHHHHhcC--CCEEEEEeCCHHHHhhCCE
Confidence 87 556666653 6899999999887766665
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-16 Score=173.13 Aligned_cols=143 Identities=15% Similarity=0.173 Sum_probs=103.6
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh-----------------hhcCccccccccc----------
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-----------------AQVGSFVPCDRAS---------- 695 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~-----------------a~~g~~vp~~~~~---------- 695 (888)
..+.++++|++.+|++++|+||||||||||||+++++... ...-.|+|+....
T Consensus 20 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~ 99 (272)
T PRK15056 20 HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVED 99 (272)
T ss_pred cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhh
Confidence 3567799999999999999999999999999999875311 0111244433100
Q ss_pred -c-------------------cHHHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHH
Q 002722 696 -I-------------------SVRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGF 754 (888)
Q Consensus 696 -~-------------------~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~ 754 (888)
+ ..+..++.++|+.+........+|+++++...+.+ .+.+|+++|||||++|+|+....
T Consensus 100 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~ 179 (272)
T PRK15056 100 VVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEA 179 (272)
T ss_pred heecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 0 01223456667766666677788877777655554 47899999999999999999888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 755 GLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
.+ ..++..+.+ .|.++|++||+.+.. +++++
T Consensus 180 ~l-~~~L~~~~~-~g~tviivsH~~~~~~~~~d~ 211 (272)
T PRK15056 180 RI-ISLLRELRD-EGKTMLVSTHNLGSVTEFCDY 211 (272)
T ss_pred HH-HHHHHHHHh-CCCEEEEEeCCHHHHHHhCCE
Confidence 88 566666765 589999999998654 56665
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-16 Score=171.48 Aligned_cols=143 Identities=20% Similarity=0.195 Sum_probs=102.3
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh----------------------------hcCcccccccc-
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA----------------------------QVGSFVPCDRA- 694 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a----------------------------~~g~~vp~~~~- 694 (888)
.+.++++|++.+|++++|+||||||||||||+++++.... ....|+|....
T Consensus 15 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~ 94 (272)
T PRK13547 15 AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQP 94 (272)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCC
Confidence 5677999999999999999999999999999998764321 01123443321
Q ss_pred --cccHHH-------------------------HHHHhcCCchhhhhccchhHHHHHHHHHHHHh-C---------CCCc
Q 002722 695 --SISVRD-------------------------CIFARVGAGDCQLRGVSTFMQEMLETASILKG-A---------TDRS 737 (888)
Q Consensus 695 --~~~~~d-------------------------~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~---------~~~s 737 (888)
..++.+ .++.++|..+......+++|+++++...+.+. + .+|+
T Consensus 95 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~ 174 (272)
T PRK13547 95 AFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPR 174 (272)
T ss_pred CCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCC
Confidence 112222 23334555544555667888887777666655 4 4899
Q ss_pred EEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 738 LIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 738 lvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
++|||||++|+|+.....+ ..++..+.+..|.++|++||+.+.. .++++
T Consensus 175 lllLDEPt~~LD~~~~~~l-~~~l~~~~~~~~~tviiisH~~~~~~~~~d~ 224 (272)
T PRK13547 175 YLLLDEPTAALDLAHQHRL-LDTVRRLARDWNLGVLAIVHDPNLAARHADR 224 (272)
T ss_pred EEEEcCccccCCHHHHHHH-HHHHHHHHHhcCCEEEEEECCHHHHHHhCCE
Confidence 9999999999999988888 5566666653489999999998765 57776
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-16 Score=175.63 Aligned_cols=153 Identities=13% Similarity=0.042 Sum_probs=110.1
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh------h----------------------hcCccccccccc
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM------A----------------------QVGSFVPCDRAS 695 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~------a----------------------~~g~~vp~~~~~ 695 (888)
.+.++++|++.+|++++|+||||||||||+|+|+++.-. + ..-.|||++...
T Consensus 21 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~ 100 (330)
T PRK15093 21 KAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQS 100 (330)
T ss_pred EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcch
Confidence 577899999999999999999999999999999876420 0 011244443210
Q ss_pred -----cc---------------------------HHHHHHHhcCCch---hhhhccchhHHHHHHHHHHHH-hCCCCcEE
Q 002722 696 -----IS---------------------------VRDCIFARVGAGD---CQLRGVSTFMQEMLETASILK-GATDRSLI 739 (888)
Q Consensus 696 -----~~---------------------------~~d~i~~~~~~~d---~~~~~~s~f~~e~~~~~~il~-~~~~~slv 739 (888)
.. .+..++.++|+.+ .+......+|++|+|...|.+ .+.+|+++
T Consensus 101 ~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~ll 180 (330)
T PRK15093 101 CLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLL 180 (330)
T ss_pred hcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEE
Confidence 01 1123455566643 234556678888887766655 47899999
Q ss_pred EEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEE
Q 002722 740 IIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 740 llDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
|+||||+|+|+.....+ ..++..+.++.|.++||+|||++++ .++++ +..+..+++.
T Consensus 181 ilDEPts~LD~~~~~~i-~~lL~~l~~~~g~tii~itHdl~~v~~~~dr---------i~vm~~G~iv 238 (330)
T PRK15093 181 IADEPTNAMEPTTQAQI-FRLLTRLNQNNNTTILLISHDLQMLSQWADK---------INVLYCGQTV 238 (330)
T ss_pred EEeCCCCcCCHHHHHHH-HHHHHHHHHhcCCEEEEEECCHHHHHHhCCE---------EEEEECCEEE
Confidence 99999999999988888 6666677664589999999998877 57877 5556666653
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-16 Score=178.67 Aligned_cols=155 Identities=14% Similarity=0.101 Sum_probs=109.6
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhh------------------cCccccccccc---ccHH--
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ------------------VGSFVPCDRAS---ISVR-- 699 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~------------------~g~~vp~~~~~---~~~~-- 699 (888)
..+.++++|++.+|++++|+||||||||||||+|+++....+ .-.|++++.+- +++.
T Consensus 32 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eN 111 (377)
T PRK11607 32 QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQN 111 (377)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHH
Confidence 357789999999999999999999999999999997642211 01234433211 1222
Q ss_pred -------------------HHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHH
Q 002722 700 -------------------DCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWA 759 (888)
Q Consensus 700 -------------------d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~ 759 (888)
..++..++..+........+|++++|...+.+ .+.+|+++|||||++|+|+.....+...
T Consensus 112 i~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~ 191 (377)
T PRK11607 112 IAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLE 191 (377)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 23445566666566666778877766655554 5889999999999999999998888544
Q ss_pred HHHHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEEE
Q 002722 760 ICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSA 807 (888)
Q Consensus 760 il~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (888)
+.+ +.++.|.++|++||+++.+ .++|+ +..+.++++..
T Consensus 192 l~~-l~~~~g~tii~vTHd~~ea~~laDr---------i~vl~~G~i~~ 230 (377)
T PRK11607 192 VVD-ILERVGVTCVMVTHDQEEAMTMAGR---------IAIMNRGKFVQ 230 (377)
T ss_pred HHH-HHHhcCCEEEEEcCCHHHHHHhCCE---------EEEEeCCEEEE
Confidence 444 4443689999999998764 68887 55555555543
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-16 Score=181.74 Aligned_cols=141 Identities=14% Similarity=0.096 Sum_probs=103.0
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhcCc--------ccc---cccccccH--------------
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGS--------FVP---CDRASISV-------------- 698 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~g~--------~vp---~~~~~~~~-------------- 698 (888)
++.++++|++.+|++++|+||||||||||||+++++..+.. |. +++ .-...+++
T Consensus 38 ~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~s-GeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~ 116 (549)
T PRK13545 38 YALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNK-GTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLT 116 (549)
T ss_pred eEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCc-eEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCC
Confidence 57789999999999999999999999999999988653211 10 000 00000111
Q ss_pred -------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCC
Q 002722 699 -------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRA 770 (888)
Q Consensus 699 -------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~ 770 (888)
++.++..++..+.+......+|+++++...+++ .+.+|+++|||||++|+|+.....+ ..++..+.+ .|+
T Consensus 117 ~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~L-lelL~el~~-~G~ 194 (549)
T PRK13545 117 KEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKC-LDKMNEFKE-QGK 194 (549)
T ss_pred HHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHH-HHHHHHHHh-CCC
Confidence 123455667766667777888888877655554 5789999999999999999888888 555666665 589
Q ss_pred eEEEEecChhHH-HHhhh
Q 002722 771 PTLFATHFHELT-ALAHE 787 (888)
Q Consensus 771 ~~l~~TH~~~l~-~~~~~ 787 (888)
++|++||+++.. .+|++
T Consensus 195 TIIIVSHdl~~i~~l~Dr 212 (549)
T PRK13545 195 TIFFISHSLSQVKSFCTK 212 (549)
T ss_pred EEEEEECCHHHHHHhCCE
Confidence 999999998765 56776
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.9e-16 Score=166.54 Aligned_cols=143 Identities=17% Similarity=0.200 Sum_probs=98.9
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHh---hhh-----------------cCcccccccc---cccHH
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL---MAQ-----------------VGSFVPCDRA---SISVR 699 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~---~a~-----------------~g~~vp~~~~---~~~~~ 699 (888)
..+.++++|++.+|++++|+||||||||||+|+++++.. ... .-.|+|.+.. .+++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 99 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVR 99 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHH
Confidence 357789999999999999999999999999999987654 210 0124443321 11222
Q ss_pred HH-------------------------HHHhcCCchhhhhccchhHHHHHHHHH-HHHhCCCCcEEEEeCCCCCCChhhH
Q 002722 700 DC-------------------------IFARVGAGDCQLRGVSTFMQEMLETAS-ILKGATDRSLIIIDELGRGTSTYDG 753 (888)
Q Consensus 700 d~-------------------------i~~~~~~~d~~~~~~s~f~~e~~~~~~-il~~~~~~slvllDEp~~gtd~~~~ 753 (888)
+. ++..++..+........+|+++++... +...+.+|+++|||||++|+|+...
T Consensus 100 enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~ 179 (226)
T cd03234 100 ETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTA 179 (226)
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHH
Confidence 22 222223322233344567766666544 4445789999999999999999888
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEecCh--hHHHHhhh
Q 002722 754 FGLAWAICEHLVEEIRAPTLFATHFH--ELTALAHE 787 (888)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~--~l~~~~~~ 787 (888)
..+ ..++..+.+ .+.++|++||+. ++.+++++
T Consensus 180 ~~~-~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~ 213 (226)
T cd03234 180 LNL-VSTLSQLAR-RNRIVILTIHQPRSDLFRLFDR 213 (226)
T ss_pred HHH-HHHHHHHHH-CCCEEEEEecCCCHHHHHhCCE
Confidence 888 556666665 488999999996 56778887
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-16 Score=163.53 Aligned_cols=141 Identities=11% Similarity=0.007 Sum_probs=99.9
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh--------------------hhcCcccccccc---cccH--
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRA---SISV-- 698 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~--------------------a~~g~~vp~~~~---~~~~-- 698 (888)
.+.++++|++.+|++++|+||||||||||+++++++... .++| |+|.... ..++
T Consensus 15 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~-~~~q~~~~~~~~tv~~ 93 (200)
T PRK13540 15 PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLC-FVGHRSGINPYLTLRE 93 (200)
T ss_pred eEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheE-EeccccccCcCCCHHH
Confidence 467799999999999999999999999999999865311 1222 3333211 1122
Q ss_pred --------------HHHHHHhcCCchhhhhccchhHHHHHHH-HHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHH
Q 002722 699 --------------RDCIFARVGAGDCQLRGVSTFMQEMLET-ASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEH 763 (888)
Q Consensus 699 --------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~-~~il~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~ 763 (888)
++.++.+++..+........+|+++++. +.+...+.+|+++|||||++|+|+.....+ ..++..
T Consensus 94 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l-~~~l~~ 172 (200)
T PRK13540 94 NCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTI-ITKIQE 172 (200)
T ss_pred HHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHH-HHHHHH
Confidence 2334455555544445556777655554 555556889999999999999999888888 555666
Q ss_pred HHhcCCCeEEEEecChhHHHHhhh
Q 002722 764 LVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 764 l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
+.+ .|+++|++||+.+....+|.
T Consensus 173 ~~~-~~~tiii~sh~~~~~~~~d~ 195 (200)
T PRK13540 173 HRA-KGGAVLLTSHQDLPLNKADY 195 (200)
T ss_pred HHH-cCCEEEEEeCCchhccccch
Confidence 665 58999999999988766654
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.7e-16 Score=171.09 Aligned_cols=142 Identities=13% Similarity=0.079 Sum_probs=98.5
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHh--h--hhc-----------------------Cccccccccc
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL--M--AQV-----------------------GSFVPCDRAS 695 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~--~--a~~-----------------------g~~vp~~~~~ 695 (888)
..+.++++|++.+|++++|+||||||||||||+++++.- . ... -.|+|++...
T Consensus 52 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l 131 (286)
T PRK14275 52 FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNP 131 (286)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCC
Confidence 357889999999999999999999999999999998531 1 011 1234433211
Q ss_pred c--cHHH----------------------HHHHhcCC----chhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCC
Q 002722 696 I--SVRD----------------------CIFARVGA----GDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGR 746 (888)
Q Consensus 696 ~--~~~d----------------------~i~~~~~~----~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~ 746 (888)
+ ++.+ .++..+|. .+.+......+|+++++...+.+ .+.+|+++|||||++
T Consensus 132 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~ 211 (286)
T PRK14275 132 FPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTS 211 (286)
T ss_pred CccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 1 1111 12233333 22334455677777766655554 578999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 747 GTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 747 gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
|+|+.....+ ..++..+.. +.++|++||+++.. +++++
T Consensus 212 gLD~~~~~~l-~~~L~~~~~--~~tvIivsH~~~~~~~~~d~ 250 (286)
T PRK14275 212 ALDPKATAKI-EDLIQELRG--SYTIMIVTHNMQQASRVSDY 250 (286)
T ss_pred cCCHHHHHHH-HHHHHHHhc--CCeEEEEeCCHHHHHHhCCE
Confidence 9999888887 556666654 58999999998775 56776
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-16 Score=177.53 Aligned_cols=139 Identities=19% Similarity=0.173 Sum_probs=102.2
Q ss_pred CccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh------------------------hcCcccccccc---cccH--
Q 002722 648 DCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA------------------------QVGSFVPCDRA---SISV-- 698 (888)
Q Consensus 648 ~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a------------------------~~g~~vp~~~~---~~~~-- 698 (888)
+++|++.+|++++|+||||||||||||+++++.... +.-.|+|+... .+++
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 94 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRG 94 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHH
Confidence 788988999999999999999999999998764210 00123443321 1111
Q ss_pred -----------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHH
Q 002722 699 -----------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAI 760 (888)
Q Consensus 699 -----------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~i 760 (888)
++.++.++|..+.......++|+++++...+++ .+.+|+++|||||++|+|+.....+ +.+
T Consensus 95 nl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l-~~~ 173 (354)
T TIGR02142 95 NLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEI-LPY 173 (354)
T ss_pred HHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHH-HHH
Confidence 233556667766667777888888877665555 4789999999999999999988888 666
Q ss_pred HHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 761 CEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 761 l~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
+..+.++.|.++|++||+++.. .++++
T Consensus 174 L~~l~~~~g~tiiivtH~~~~~~~~~d~ 201 (354)
T TIGR02142 174 LERLHAEFGIPILYVSHSLQEVLRLADR 201 (354)
T ss_pred HHHHHHhcCCEEEEEecCHHHHHHhCCE
Confidence 6666653489999999998765 57777
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-16 Score=173.90 Aligned_cols=143 Identities=18% Similarity=0.133 Sum_probs=100.7
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh-------------------------hcCcccccccc----
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA-------------------------QVGSFVPCDRA---- 694 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a-------------------------~~g~~vp~~~~---- 694 (888)
.+.++++|++.+|++++|+||||||||||||+++++.... +.-.|+|....
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 104 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLF 104 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhh
Confidence 4778999999999999999999999999999998754210 01124444320
Q ss_pred cccHH---------------------HHHHHhcCCc-hhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChh
Q 002722 695 SISVR---------------------DCIFARVGAG-DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTY 751 (888)
Q Consensus 695 ~~~~~---------------------d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~ 751 (888)
..++. +.++..++.. +......+.+|+++++...+++ .+.+|+++|||||++|+|+.
T Consensus 105 ~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~ 184 (289)
T PRK13645 105 QETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPK 184 (289)
T ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHH
Confidence 01111 1233444542 3344556778877777655555 47899999999999999998
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 752 DGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 752 ~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
....+ ..++..+.+..|+++|++||+.+.. +++++
T Consensus 185 ~~~~l-~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~ 220 (289)
T PRK13645 185 GEEDF-INLFERLNKEYKKRIIMVTHNMDQVLRIADE 220 (289)
T ss_pred HHHHH-HHHHHHHHHhcCCEEEEEecCHHHHHHhCCE
Confidence 88877 6666666543489999999998754 67776
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.9e-16 Score=185.73 Aligned_cols=142 Identities=12% Similarity=0.017 Sum_probs=106.8
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh--------------------hcCcccccccc---------
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA--------------------QVGSFVPCDRA--------- 694 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a--------------------~~g~~vp~~~~--------- 694 (888)
.+.++++|++.+|++++|+||||||||||||+++++.... +.-.++|+...
T Consensus 17 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 96 (490)
T PRK10938 17 KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGED 96 (490)
T ss_pred eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchh
Confidence 4788999999999999999999999999999998753210 00113332210
Q ss_pred --ccc-------------HHHHHHHhcCCchhhhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHH
Q 002722 695 --SIS-------------VRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDGFGLAW 758 (888)
Q Consensus 695 --~~~-------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~slvllDEp~~gtd~~~~~~i~~ 758 (888)
.+. .+..++.++|..+......+++|+++++...+++. +.+|+++||||||+|+|+.....+ .
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l-~ 175 (490)
T PRK10938 97 DTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQL-A 175 (490)
T ss_pred hccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHH-H
Confidence 011 12345677888777777888999888887666654 789999999999999999888888 6
Q ss_pred HHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 759 AICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 759 ~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
.++..+.+ .|.++|++||+.+.. +++++
T Consensus 176 ~~l~~~~~-~g~tvii~tH~~~~~~~~~d~ 204 (490)
T PRK10938 176 ELLASLHQ-SGITLVLVLNRFDEIPDFVQF 204 (490)
T ss_pred HHHHHHHh-cCCeEEEEeCCHHHHHhhCCE
Confidence 67777776 589999999997765 56766
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-16 Score=154.14 Aligned_cols=137 Identities=18% Similarity=0.109 Sum_probs=99.0
Q ss_pred CcccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhcC-----cc---c--------------ccccccccH
Q 002722 641 WVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVG-----SF---V--------------PCDRASISV 698 (888)
Q Consensus 641 ~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~g-----~~---v--------------p~~~~~~~~ 698 (888)
+...++.+++|++.+|+++.|+||||+|||||||+++++.-....- .. + |+-+..++.
T Consensus 13 ~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa 92 (209)
T COG4133 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTA 92 (209)
T ss_pred CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhH
Confidence 4567888999999999999999999999999999999875332110 00 0 111111222
Q ss_pred HH------------------HHHHhcCCchhhhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHH
Q 002722 699 RD------------------CIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDGFGLAWA 759 (888)
Q Consensus 699 ~d------------------~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~slvllDEp~~gtd~~~~~~i~~~ 759 (888)
+. ..+..+|..+........+|.++++...+.+. ++.++|+|||||++++|......+..-
T Consensus 93 ~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l 172 (209)
T COG4133 93 LENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTAL 172 (209)
T ss_pred HHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHH
Confidence 21 23455666666667778888888888777765 789999999999999999766666555
Q ss_pred HHHHHHhcCCCeEEEEecCh
Q 002722 760 ICEHLVEEIRAPTLFATHFH 779 (888)
Q Consensus 760 il~~l~~~~~~~~l~~TH~~ 779 (888)
+..|.. .|-.||++||..
T Consensus 173 ~~~H~~--~GGiVllttHq~ 190 (209)
T COG4133 173 MAAHAA--QGGIVLLTTHQP 190 (209)
T ss_pred HHHHhc--CCCEEEEecCCc
Confidence 555554 488899999985
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-16 Score=164.95 Aligned_cols=142 Identities=15% Similarity=0.111 Sum_probs=96.5
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhcC--------cccccccc--cccHHHH------------
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVG--------SFVPCDRA--SISVRDC------------ 701 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~g--------~~vp~~~~--~~~~~d~------------ 701 (888)
.+.++++|++.+|++++|+||||||||||+|+++++.... .| .|+|.... ..++.+.
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~-~G~i~~~g~i~~~~q~~~l~~~t~~enl~~~~~~~~~~~ 97 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKL-SGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERY 97 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCC-CCeEEEcCEEEEEecCchhccCcHHHHhccCCCcCHHHH
Confidence 4667999999999999999999999999999998864321 12 34554421 1111111
Q ss_pred --HHHhcCCchhh-----------hhccchhHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhc
Q 002722 702 --IFARVGAGDCQ-----------LRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEE 767 (888)
Q Consensus 702 --i~~~~~~~d~~-----------~~~~s~f~~e~~~~~~il-~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~ 767 (888)
....+++.+.+ ......+|+++++...+. ..+.+|+++|+|||++|+|+.....+...++..+.+
T Consensus 98 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~- 176 (204)
T cd03250 98 EKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLL- 176 (204)
T ss_pred HHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcc-
Confidence 12222322222 223456776666655544 457899999999999999998877775556665554
Q ss_pred CCCeEEEEecChhHHHHhhh
Q 002722 768 IRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 768 ~~~~~l~~TH~~~l~~~~~~ 787 (888)
.|.++|++||+++....+++
T Consensus 177 ~~~tvi~~sh~~~~~~~~d~ 196 (204)
T cd03250 177 NNKTRILVTHQLQLLPHADQ 196 (204)
T ss_pred CCCEEEEEeCCHHHHhhCCE
Confidence 48999999999887765554
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.3e-16 Score=172.46 Aligned_cols=152 Identities=16% Similarity=0.098 Sum_probs=107.9
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh------------------------------------hcCc
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA------------------------------------QVGS 687 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a------------------------------------~~g~ 687 (888)
.+.++++|++.+|++++|+||||||||||+|+++++.... +.-.
T Consensus 40 ~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig 119 (320)
T PRK13631 40 VALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVS 119 (320)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEE
Confidence 5889999999999999999999999999999998653110 0012
Q ss_pred ccccccc----cccH---------------------HHHHHHhcCCc-hhhhhccchhHHHHHHHHHHHH-hCCCCcEEE
Q 002722 688 FVPCDRA----SISV---------------------RDCIFARVGAG-DCQLRGVSTFMQEMLETASILK-GATDRSLII 740 (888)
Q Consensus 688 ~vp~~~~----~~~~---------------------~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~-~~~~~slvl 740 (888)
||++... ..++ +..++..+|.. +........+|+++++...+.+ .+.+|+++|
T Consensus 120 ~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLL 199 (320)
T PRK13631 120 MVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILI 199 (320)
T ss_pred EEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 3443320 0011 12234555664 3455566778877777655555 478999999
Q ss_pred EeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEE
Q 002722 741 IDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 741 lDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
||||++|+|+.....+ ..++..+.+ .|.++|++||+++.. .++++ .-.+.++++.
T Consensus 200 LDEPtsgLD~~~~~~l-~~~L~~l~~-~g~TiiivtHd~~~~~~~adr---------i~vl~~G~i~ 255 (320)
T PRK13631 200 FDEPTAGLDPKGEHEM-MQLILDAKA-NNKTVFVITHTMEHVLEVADE---------VIVMDKGKIL 255 (320)
T ss_pred EECCccCCCHHHHHHH-HHHHHHHHH-CCCEEEEEecCHHHHHHhCCE---------EEEEECCEEE
Confidence 9999999999988888 666677765 589999999998754 67887 5555555543
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-16 Score=171.80 Aligned_cols=143 Identities=18% Similarity=0.085 Sum_probs=103.9
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh--------------------hhcCcccccccc----cccHH
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRA----SISVR 699 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~--------------------a~~g~~vp~~~~----~~~~~ 699 (888)
.+.++++|++.+|++++|+||||||||||+++++++... .+.-.|+|.... ..++.
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 100 (277)
T PRK13642 21 NQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVE 100 (277)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHH
Confidence 467899999999999999999999999999999865321 111134444321 11222
Q ss_pred H---------------------HHHHhcCCchhhhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHH
Q 002722 700 D---------------------CIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDGFGLA 757 (888)
Q Consensus 700 d---------------------~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~slvllDEp~~gtd~~~~~~i~ 757 (888)
+ .++..+|..+........+|+++++...+.+. +.+|+++|||||++|+|+.....+
T Consensus 101 eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l- 179 (277)
T PRK13642 101 DDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEI- 179 (277)
T ss_pred HHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH-
Confidence 2 23344455555555667788887777666554 789999999999999999999988
Q ss_pred HHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 758 WAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 758 ~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
..++..+.++.|.++|++||+++....+++
T Consensus 180 ~~~l~~l~~~~g~tiil~sH~~~~~~~~d~ 209 (277)
T PRK13642 180 MRVIHEIKEKYQLTVLSITHDLDEAASSDR 209 (277)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHhCCE
Confidence 566667765348999999999888766666
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-16 Score=164.16 Aligned_cols=135 Identities=15% Similarity=0.081 Sum_probs=97.4
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh--------------------hhcCccccccccc---ccH-
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRAS---ISV- 698 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~--------------------a~~g~~vp~~~~~---~~~- 698 (888)
..+.++++|++.+|++++|+||||||||||+|+++++... .++ .|+|+.... .++
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i-~~~~q~~~~~~~~tv~ 91 (198)
T TIGR01189 13 RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNI-LYLGHLPGLKPELSAL 91 (198)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhhe-EEeccCcccccCCcHH
Confidence 3567899999999999999999999999999999875311 112 244433211 111
Q ss_pred ----------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHH
Q 002722 699 ----------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAIC 761 (888)
Q Consensus 699 ----------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~il 761 (888)
+..++.++|..+........+|+++++...+++ .+.+|+++|||||++|+|+.....+ +.++
T Consensus 92 ~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l-~~~l 170 (198)
T TIGR01189 92 ENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALL-AGLL 170 (198)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH-HHHH
Confidence 223455566666566666778877666655554 5789999999999999999887777 6666
Q ss_pred HHHHhcCCCeEEEEecChh
Q 002722 762 EHLVEEIRAPTLFATHFHE 780 (888)
Q Consensus 762 ~~l~~~~~~~~l~~TH~~~ 780 (888)
..+.+ .|.++|++||++.
T Consensus 171 ~~~~~-~~~tii~~sH~~~ 188 (198)
T TIGR01189 171 RAHLA-RGGIVLLTTHQDL 188 (198)
T ss_pred HHHHh-CCCEEEEEEcccc
Confidence 66665 5889999999974
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-16 Score=170.90 Aligned_cols=154 Identities=16% Similarity=0.098 Sum_probs=107.0
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh-----------------------hhcCcccccccc-----
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-----------------------AQVGSFVPCDRA----- 694 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~-----------------------a~~g~~vp~~~~----- 694 (888)
..+.++++|++.+|++++|+||||||||||+|+++++... .+...|+|+...
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 104 (268)
T PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNP 104 (268)
T ss_pred eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCC
Confidence 4577899999999999999999999999999999865311 011123443320
Q ss_pred ccc----------------------HHHHHHHhcCCc-hhhhhccchhHHHHHHHHHH-HHhCCCCcEEEEeCCCCCCCh
Q 002722 695 SIS----------------------VRDCIFARVGAG-DCQLRGVSTFMQEMLETASI-LKGATDRSLIIIDELGRGTST 750 (888)
Q Consensus 695 ~~~----------------------~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~i-l~~~~~~slvllDEp~~gtd~ 750 (888)
... .++.++.++|.. +........+|+++++...+ ...+.+|+++|||||++|+|+
T Consensus 105 ~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~ 184 (268)
T PRK10419 105 RKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDL 184 (268)
T ss_pred CCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCH
Confidence 011 122345556664 34555666777666665444 445889999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEE
Q 002722 751 YDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 751 ~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
.....+ ..+++.+.+..+.++|++||+.+.. .++++ .-.+.++.+.
T Consensus 185 ~~~~~~-~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~---------i~~l~~G~i~ 231 (268)
T PRK10419 185 VLQAGV-IRLLKKLQQQFGTACLFITHDLRLVERFCQR---------VMVMDNGQIV 231 (268)
T ss_pred HHHHHH-HHHHHHHHHHcCcEEEEEECCHHHHHHhCCE---------EEEEECCEEe
Confidence 888877 5566666653489999999998776 47777 5555555543
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.1e-16 Score=167.60 Aligned_cols=152 Identities=13% Similarity=0.032 Sum_probs=103.0
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHH--hhh--hc-----------------------Cccccccccc
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI--LMA--QV-----------------------GSFVPCDRAS 695 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~--~~a--~~-----------------------g~~vp~~~~~ 695 (888)
..+.++++|++.+|++++|+||||||||||+|+++++. ... .. -.|+|....-
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 95 (250)
T PRK14245 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNP 95 (250)
T ss_pred EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCcc
Confidence 35778999999999999999999999999999998752 110 01 1233433210
Q ss_pred --ccHHH----------------------HHHHhcCCch----hhhhccchhHHHHHHHHHHH-HhCCCCcEEEEeCCCC
Q 002722 696 --ISVRD----------------------CIFARVGAGD----CQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGR 746 (888)
Q Consensus 696 --~~~~d----------------------~i~~~~~~~d----~~~~~~s~f~~e~~~~~~il-~~~~~~slvllDEp~~ 746 (888)
.++.+ .++.++|..+ .+......+|+++++...++ ..+.+|+++|||||++
T Consensus 96 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~ 175 (250)
T PRK14245 96 FPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPAS 175 (250)
T ss_pred CcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 11111 2233344422 23344556777766665544 4588999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEE
Q 002722 747 GTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 747 gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
|+|+.....+ ..++..+.+ ++++|++||+.+.. +++++ +-.+.++++.
T Consensus 176 ~LD~~~~~~l-~~~l~~~~~--~~tiiivtH~~~~~~~~~d~---------v~~l~~G~~~ 224 (250)
T PRK14245 176 ALDPISTAKV-EELIHELKK--DYTIVIVTHNMQQAARVSDK---------TAFFYMGEMV 224 (250)
T ss_pred cCCHHHHHHH-HHHHHHHhc--CCeEEEEeCCHHHHHhhCCE---------EEEEECCEEE
Confidence 9999888888 556666643 78999999998765 67777 5556665554
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.9e-16 Score=186.31 Aligned_cols=143 Identities=17% Similarity=0.158 Sum_probs=107.2
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh--------------------hc-Ccccccccc---cccH
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA--------------------QV-GSFVPCDRA---SISV 698 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a--------------------~~-g~~vp~~~~---~~~~ 698 (888)
..+.++++|++.+|++++|+||||||||||||+++++.... .. -.|+|++.. .+++
T Consensus 24 ~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 103 (510)
T PRK15439 24 VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSV 103 (510)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcH
Confidence 35778999999999999999999999999999998764211 00 124554321 1111
Q ss_pred -----------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHH
Q 002722 699 -----------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAI 760 (888)
Q Consensus 699 -----------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~i 760 (888)
+..++..+|..+......+.+|+++++...+++ .+.+|+++||||||+|+|+.....+ ..+
T Consensus 104 ~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l-~~~ 182 (510)
T PRK15439 104 KENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERL-FSR 182 (510)
T ss_pred HHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHH-HHH
Confidence 223456667766666777889988887766665 4789999999999999999988888 666
Q ss_pred HHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 761 CEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 761 l~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
++.+.+ .|.++|++||+.+.. .++++
T Consensus 183 l~~~~~-~g~tiiivtHd~~~~~~~~d~ 209 (510)
T PRK15439 183 IRELLA-QGVGIVFISHKLPEIRQLADR 209 (510)
T ss_pred HHHHHH-CCCEEEEEeCCHHHHHHhCCE
Confidence 777776 589999999998765 57777
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.1e-16 Score=176.67 Aligned_cols=139 Identities=21% Similarity=0.141 Sum_probs=102.9
Q ss_pred CccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhh------------------------cCccccccccc---ccH--
Q 002722 648 DCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ------------------------VGSFVPCDRAS---ISV-- 698 (888)
Q Consensus 648 ~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~------------------------~g~~vp~~~~~---~~~-- 698 (888)
+++|++.+|++++|+||||||||||||+++++..... .-.|+|+.... .++
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 95 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRG 95 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHH
Confidence 7889989999999999999999999999987642110 01234433211 111
Q ss_pred -------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHH
Q 002722 699 -------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHL 764 (888)
Q Consensus 699 -------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l 764 (888)
++.++..+|..+........+|+++++...+.+ .+.+|+++|||||++|+|+.....+ ..++..+
T Consensus 96 nl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l-~~~L~~l 174 (352)
T PRK11144 96 NLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREL-LPYLERL 174 (352)
T ss_pred HHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHH-HHHHHHH
Confidence 234566778777777777888888777665555 4789999999999999999988888 5566666
Q ss_pred HhcCCCeEEEEecChhHH-HHhhh
Q 002722 765 VEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 765 ~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
.++.|.++|++||+++.+ .++++
T Consensus 175 ~~~~g~tii~vTHd~~~~~~~~d~ 198 (352)
T PRK11144 175 AREINIPILYVSHSLDEILRLADR 198 (352)
T ss_pred HHhcCCeEEEEecCHHHHHHhCCE
Confidence 653589999999998654 67776
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.7e-16 Score=168.47 Aligned_cols=154 Identities=18% Similarity=0.111 Sum_probs=103.7
Q ss_pred EEEEcCcCceeeeccCcccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh----hcC---------------
Q 002722 626 IILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA----QVG--------------- 686 (888)
Q Consensus 626 l~i~~~rhp~~~~~~~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a----~~g--------------- 686 (888)
+.+++..+.+ ++..+.++++|++.+|++++|+||||||||||||+++++.-.. ..|
T Consensus 8 l~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (254)
T PRK14273 8 IETENLNLFY-----TDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82 (254)
T ss_pred EEEeeeEEEe-----CCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence 5555554332 1235788999999999999999999999999999998765321 011
Q ss_pred --------cccccccc--cccHHHHH----------------------HHhcCC----chhhhhccchhHHHHHHHHHHH
Q 002722 687 --------SFVPCDRA--SISVRDCI----------------------FARVGA----GDCQLRGVSTFMQEMLETASIL 730 (888)
Q Consensus 687 --------~~vp~~~~--~~~~~d~i----------------------~~~~~~----~d~~~~~~s~f~~e~~~~~~il 730 (888)
.|+|++.. ..++.+.+ +.+++. .+......+.+|+++++...+.
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~la 162 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIA 162 (254)
T ss_pred HHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHH
Confidence 23333321 11222222 222222 1223444567777777765555
Q ss_pred H-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 731 K-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 731 ~-~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
+ .+.+|+++|||||++|+|+.....+ ..++..+.+ +.++|++||+.+.+ +++++
T Consensus 163 ral~~~p~lllLDEPt~~LD~~~~~~l-~~~l~~~~~--~~tvii~sH~~~~~~~~~d~ 218 (254)
T PRK14273 163 RTLAIEPNVILMDEPTSALDPISTGKI-EELIINLKE--SYTIIIVTHNMQQAGRISDR 218 (254)
T ss_pred HHHHcCCCEEEEeCCCcccCHHHHHHH-HHHHHHHhc--CCEEEEEeCCHHHHHHhCCE
Confidence 5 4789999999999999999988888 556666653 68999999998875 56776
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.5e-16 Score=165.50 Aligned_cols=142 Identities=17% Similarity=0.136 Sum_probs=99.9
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh----------------------------hcCccccccccc
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA----------------------------QVGSFVPCDRAS 695 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a----------------------------~~g~~vp~~~~~ 695 (888)
.+.++++|++.+|++++|+||||||||||+|+++++.... +...|+|+....
T Consensus 22 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 101 (224)
T TIGR02324 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRV 101 (224)
T ss_pred EEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEeccccc
Confidence 5677999999999999999999999999999998653110 011244443211
Q ss_pred c---cH---------------------HHHHHHhcCCchhh-hhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCC
Q 002722 696 I---SV---------------------RDCIFARVGAGDCQ-LRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTS 749 (888)
Q Consensus 696 ~---~~---------------------~d~i~~~~~~~d~~-~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd 749 (888)
. .+ +..++..+|..+.. ......+|+++++...+.+ .+.+|+++|||||++|+|
T Consensus 102 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD 181 (224)
T TIGR02324 102 IPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLD 181 (224)
T ss_pred CCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 0 11 11234445554432 3455677777766655554 478999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 750 TYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 750 ~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
+.....+ ..++..+.+ .|+++|++||+.++. .++++
T Consensus 182 ~~~~~~l-~~~l~~~~~-~g~tii~vsH~~~~~~~~~d~ 218 (224)
T TIGR02324 182 AANRQVV-VELIAEAKA-RGAALIGIFHDEEVRELVADR 218 (224)
T ss_pred HHHHHHH-HHHHHHHHh-cCCEEEEEeCCHHHHHHhcce
Confidence 9988888 556666665 589999999998876 46765
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-16 Score=167.88 Aligned_cols=141 Identities=12% Similarity=-0.002 Sum_probs=96.1
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh--------------------hcCccccccccc--ccHHHH
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA--------------------QVGSFVPCDRAS--ISVRDC 701 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a--------------------~~g~~vp~~~~~--~~~~d~ 701 (888)
.+.++++|++.+|++++|+||||||||||+++++++.... +.-.|+|+...- .++.+.
T Consensus 17 ~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~ 96 (238)
T cd03249 17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAEN 96 (238)
T ss_pred cceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHHH
Confidence 4678999999999999999999999999999998763211 111234433210 111111
Q ss_pred H---------------HHhcCCch-----------hhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHH
Q 002722 702 I---------------FARVGAGD-----------CQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGF 754 (888)
Q Consensus 702 i---------------~~~~~~~d-----------~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~ 754 (888)
+ ....++.+ ........+|+++++...+.+ .+.+|+++|||||++|+|+....
T Consensus 97 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~ 176 (238)
T cd03249 97 IRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEK 176 (238)
T ss_pred hhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHH
Confidence 1 11112211 122234567777776655555 47899999999999999999888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 755 GLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
.+ +.++..+. .|+++|++||+++....+++
T Consensus 177 ~l-~~~l~~~~--~g~~vi~~sh~~~~~~~~d~ 206 (238)
T cd03249 177 LV-QEALDRAM--KGRTTIVIAHRLSTIRNADL 206 (238)
T ss_pred HH-HHHHHHhc--CCCEEEEEeCCHHHHhhCCE
Confidence 88 66666664 48999999999888777766
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.7e-16 Score=167.86 Aligned_cols=141 Identities=18% Similarity=0.076 Sum_probs=95.9
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh--------------------hcCccccccccc--ccHHHH
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA--------------------QVGSFVPCDRAS--ISVRDC 701 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a--------------------~~g~~vp~~~~~--~~~~d~ 701 (888)
.+.++++|++.+|++++|+||||||||||+|+++++.... +.-.|+|....- .++.+.
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~en 95 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAEN 95 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHHH
Confidence 5677999999999999999999999999999998764211 111244433211 122221
Q ss_pred H---------------HHhcCC-----------chhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHH
Q 002722 702 I---------------FARVGA-----------GDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGF 754 (888)
Q Consensus 702 i---------------~~~~~~-----------~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~ 754 (888)
+ ....++ ..........+|+++++...+.+ .+.+|+++|||||++|+|+....
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~ 175 (234)
T cd03251 96 IAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESER 175 (234)
T ss_pred hhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHH
Confidence 1 111111 11122334567766666555544 57899999999999999999888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 755 GLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
.+ ..++..+.+ +.++|++||+++....+++
T Consensus 176 ~l-~~~l~~~~~--~~tii~~sh~~~~~~~~d~ 205 (234)
T cd03251 176 LV-QAALERLMK--NRTTFVIAHRLSTIENADR 205 (234)
T ss_pred HH-HHHHHHhcC--CCEEEEEecCHHHHhhCCE
Confidence 88 666666653 7899999999887766766
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.9e-16 Score=173.61 Aligned_cols=153 Identities=16% Similarity=0.082 Sum_probs=110.1
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh-----------------------hhcCcccccccc-----c
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-----------------------AQVGSFVPCDRA-----S 695 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~-----------------------a~~g~~vp~~~~-----~ 695 (888)
.+.++++|++.+|++++|+||||||||||+|+|+++... ...-.||+++.. .
T Consensus 35 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~ 114 (331)
T PRK15079 35 KAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPR 114 (331)
T ss_pred EEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCC
Confidence 577899999999999999999999999999999865311 001124444321 1
Q ss_pred ccHH-----------------------HHHHHhcCCc-hhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCCh
Q 002722 696 ISVR-----------------------DCIFARVGAG-DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTST 750 (888)
Q Consensus 696 ~~~~-----------------------d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~ 750 (888)
..+. ..++.++|.. +........+|++|+|...|.+ .+.+|+|+|+||||+|+|+
T Consensus 115 ~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~ 194 (331)
T PRK15079 115 MTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDV 194 (331)
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCH
Confidence 1111 1234556663 3345566788888887766665 4789999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCeEEEEecChhHHH-HhhhccccccccccccEeEEEEE
Q 002722 751 YDGFGLAWAICEHLVEEIRAPTLFATHFHELTA-LAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 751 ~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~-~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
.....+ ..++..+.++.|.++||+|||++++. ++++ +..+.++++.
T Consensus 195 ~~~~~i-~~lL~~l~~~~~~til~iTHdl~~~~~~~dr---------i~vl~~G~iv 241 (331)
T PRK15079 195 SIQAQV-VNLLQQLQREMGLSLIFIAHDLAVVKHISDR---------VLVMYLGHAV 241 (331)
T ss_pred HHHHHH-HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCE---------EEEEECCEEE
Confidence 988888 56667776545899999999988774 7877 5555556553
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.2e-16 Score=167.65 Aligned_cols=137 Identities=18% Similarity=0.106 Sum_probs=96.4
Q ss_pred cccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhh--------cCcccccccc---cccH-----------------HHH
Q 002722 650 KLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ--------VGSFVPCDRA---SISV-----------------RDC 701 (888)
Q Consensus 650 ~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~--------~g~~vp~~~~---~~~~-----------------~d~ 701 (888)
.+++.+|++++|+||||||||||||+++++..... .-.|+|+... ..++ ...
T Consensus 19 ~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~ 98 (246)
T cd03237 19 GGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTE 98 (246)
T ss_pred cCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHH
Confidence 33445799999999999999999999988643211 1124444321 1111 123
Q ss_pred HHHhcCCchhhhhccchhHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChh
Q 002722 702 IFARVGAGDCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHE 780 (888)
Q Consensus 702 i~~~~~~~d~~~~~~s~f~~e~~~~~~il-~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~ 780 (888)
++..++..+......+.+|+++++...++ ..+.+|+++|||||++|+|+.....+ ..++..+.++.++++|++||+.+
T Consensus 99 ~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l-~~~l~~~~~~~~~tiiivsHd~~ 177 (246)
T cd03237 99 IAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMA-SKVIRRFAENNEKTAFVVEHDII 177 (246)
T ss_pred HHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHH
Confidence 45566666666667778887776665544 45889999999999999999988888 55566665435899999999987
Q ss_pred HHH-Hhhh
Q 002722 781 LTA-LAHE 787 (888)
Q Consensus 781 l~~-~~~~ 787 (888)
+.. ++++
T Consensus 178 ~~~~~~d~ 185 (246)
T cd03237 178 MIDYLADR 185 (246)
T ss_pred HHHHhCCE
Confidence 764 5665
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.5e-16 Score=168.87 Aligned_cols=142 Identities=15% Similarity=0.120 Sum_probs=98.7
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhc-----C--ccccccc---ccccHHH-------------
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQV-----G--SFVPCDR---ASISVRD------------- 700 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~-----g--~~vp~~~---~~~~~~d------------- 700 (888)
.+.++++|++.+|++++|+|||||||||||++++++..+... | .+++... ..+++.+
T Consensus 38 ~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~ 117 (264)
T PRK13546 38 FALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKR 117 (264)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCH
Confidence 467789999999999999999999999999999986432210 0 1111110 0111211
Q ss_pred --------HHHHhcCCchhhhhccchhHHHHHHHHH-HHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCe
Q 002722 701 --------CIFARVGAGDCQLRGVSTFMQEMLETAS-ILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAP 771 (888)
Q Consensus 701 --------~i~~~~~~~d~~~~~~s~f~~e~~~~~~-il~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~ 771 (888)
.++..++..+.+......+|+++++... +...+.+|+++|||||++|+|+.....+ ..++..+.+ .|.+
T Consensus 118 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l-~~~L~~~~~-~g~t 195 (264)
T PRK13546 118 KEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKC-LDKIYEFKE-QNKT 195 (264)
T ss_pred HHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHH-HHHHHHHHH-CCCE
Confidence 2333445555555566778877666544 4445789999999999999999887777 555666665 5899
Q ss_pred EEEEecChhHH-HHhhh
Q 002722 772 TLFATHFHELT-ALAHE 787 (888)
Q Consensus 772 ~l~~TH~~~l~-~~~~~ 787 (888)
+|++||+.+.. +++++
T Consensus 196 iIiisH~~~~i~~~~d~ 212 (264)
T PRK13546 196 IFFVSHNLGQVRQFCTK 212 (264)
T ss_pred EEEEcCCHHHHHHHcCE
Confidence 99999998765 56665
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.6e-16 Score=165.95 Aligned_cols=141 Identities=17% Similarity=0.085 Sum_probs=95.2
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh--------------------hcCcccccccccc--cHHHH
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA--------------------QVGSFVPCDRASI--SVRDC 701 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a--------------------~~g~~vp~~~~~~--~~~d~ 701 (888)
.+.++++|++.+|++++|+||||||||||||+++++.... ..-.|+|....-+ ++.+.
T Consensus 17 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~ 96 (229)
T cd03254 17 PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMEN 96 (229)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHHHH
Confidence 5778999999999999999999999999999998754211 1112344332110 11111
Q ss_pred ---------------HHHhcCCch-----------hhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHH
Q 002722 702 ---------------IFARVGAGD-----------CQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGF 754 (888)
Q Consensus 702 ---------------i~~~~~~~d-----------~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~ 754 (888)
.+.++++.+ ........+|+++++...+.+ .+.+|+++|||||++|+|+....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~ 176 (229)
T cd03254 97 IRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEK 176 (229)
T ss_pred HhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHH
Confidence 111222221 112223567766666555444 57899999999999999999888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 755 GLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
.+ ..++..+. .+.++|++||+++....+++
T Consensus 177 ~l-~~~l~~~~--~~~tii~~sh~~~~~~~~d~ 206 (229)
T cd03254 177 LI-QEALEKLM--KGRTSIIIAHRLSTIKNADK 206 (229)
T ss_pred HH-HHHHHHhc--CCCEEEEEecCHHHHhhCCE
Confidence 88 56666664 37899999999887766665
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.1e-16 Score=185.93 Aligned_cols=143 Identities=16% Similarity=0.105 Sum_probs=105.8
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh----h-------------------hcCcccccccc---cc
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----A-------------------QVGSFVPCDRA---SI 696 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~----a-------------------~~g~~vp~~~~---~~ 696 (888)
..+.++++|++.+|++++|+||||||||||||+++++... + +.-.|+|++.. .+
T Consensus 18 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 97 (506)
T PRK13549 18 VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKEL 97 (506)
T ss_pred eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCC
Confidence 4578899999999999999999999999999999886532 0 00123443210 01
Q ss_pred cH------------------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChh
Q 002722 697 SV------------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTY 751 (888)
Q Consensus 697 ~~------------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~ 751 (888)
++ +..++.++|..+......+++|+++++...+++ .+.+|+++||||||+|+|+.
T Consensus 98 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~ 177 (506)
T PRK13549 98 SVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTES 177 (506)
T ss_pred cHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Confidence 11 223455666655556667888888877766555 47899999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 752 DGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 752 ~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
....+ ..++..+.+ .|.++|++||+.+.. .++++
T Consensus 178 ~~~~l-~~~l~~l~~-~~~tvi~~tH~~~~~~~~~d~ 212 (506)
T PRK13549 178 ETAVL-LDIIRDLKA-HGIACIYISHKLNEVKAISDT 212 (506)
T ss_pred HHHHH-HHHHHHHHH-CCCEEEEEeCcHHHHHHhcCE
Confidence 88888 667777765 589999999997765 57776
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.9e-16 Score=167.70 Aligned_cols=154 Identities=14% Similarity=0.088 Sum_probs=103.1
Q ss_pred EEEEcCcCceeeeccCcccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh----hhcC---------------
Q 002722 626 IILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----AQVG--------------- 686 (888)
Q Consensus 626 l~i~~~rhp~~~~~~~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~----a~~g--------------- 686 (888)
+.+.+....+ +...+.++++|++.+|++++|+||||||||||+|+++++... ..-|
T Consensus 14 l~~~~l~~~~-----~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 14 IQVRNLNFYY-----GKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred EEEEEEEEEe-----CCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 5665544322 123577899999999999999999999999999999987420 0111
Q ss_pred --------ccccccccc--ccHHH----------------------HHHHhcCCc----hhhhhccchhHHHHHHHHHHH
Q 002722 687 --------SFVPCDRAS--ISVRD----------------------CIFARVGAG----DCQLRGVSTFMQEMLETASIL 730 (888)
Q Consensus 687 --------~~vp~~~~~--~~~~d----------------------~i~~~~~~~----d~~~~~~s~f~~e~~~~~~il 730 (888)
.|+|+.... .++.+ .++..++.. +.+......+|+++++...+.
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~la 168 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIA 168 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHH
Confidence 133433210 11112 223333431 223445567777776665555
Q ss_pred H-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 731 K-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 731 ~-~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
+ .+.+|+++|||||++|+|+.....+ ..++..+.+ +.++|++||+.+.. .++++
T Consensus 169 ral~~~p~lllLDEPt~~LD~~~~~~l-~~~L~~~~~--~~tiii~sH~~~~~~~~~d~ 224 (260)
T PRK10744 169 RGIAIRPEVLLLDEPCSALDPISTGRI-EELITELKQ--DYTVVIVTHNMQQAARCSDY 224 (260)
T ss_pred HHHHCCCCEEEEcCCCccCCHHHHHHH-HHHHHHHhc--CCeEEEEeCCHHHHHHhCCE
Confidence 4 4789999999999999999888877 556666653 68999999998765 56776
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.7e-16 Score=157.12 Aligned_cols=135 Identities=18% Similarity=0.145 Sum_probs=88.6
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhcCcccccccccccHHHHHHHhcCCchhhhhccchhHHHH
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEM 723 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~g~~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~ 723 (888)
.+.++++|++.+|++++|+||||+|||||+++++++....+.-.++............+...++.... +++++
T Consensus 13 ~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q-------lS~G~ 85 (157)
T cd00267 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ-------LSGGQ 85 (157)
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee-------CCHHH
Confidence 45668888889999999999999999999999987653221111111111000001111122221111 55555
Q ss_pred HHHH-HHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHHH-hhh
Q 002722 724 LETA-SILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTAL-AHE 787 (888)
Q Consensus 724 ~~~~-~il~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~-~~~ 787 (888)
++.. .+...+.+|+++|+|||++|+|+.....+ +.++..+.+ .+++++++||+++.... +++
T Consensus 86 ~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l-~~~l~~~~~-~~~tii~~sh~~~~~~~~~d~ 149 (157)
T cd00267 86 RQRVALARALLLNPDLLLLDEPTSGLDPASRERL-LELLRELAE-EGRTVIIVTHDPELAELAADR 149 (157)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH-HHHHHHHHH-CCCEEEEEeCCHHHHHHhCCE
Confidence 5544 44445789999999999999999888888 555666665 37899999999887654 455
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.2e-16 Score=158.31 Aligned_cols=120 Identities=14% Similarity=0.061 Sum_probs=81.2
Q ss_pred ccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhcCcccccccccccHHHHHHHhcCCchhhhhccchhHHHHHHHHHHH
Q 002722 651 LIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASIL 730 (888)
Q Consensus 651 l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~g~~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il 730 (888)
|++.+|++++|+||||||||||+|+++++.... .|...-. ...++... +.. .+|+++++...+.
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~-g~~i~~~~---------q~~-----~LSgGq~qrv~la 83 (177)
T cd03222 20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPN-GDNDEWD-GITPVYKP---------QYI-----DLSGGELQRVAIA 83 (177)
T ss_pred cEECCCCEEEEECCCCChHHHHHHHHHcCCCCC-CcEEEEC-CEEEEEEc---------ccC-----CCCHHHHHHHHHH
Confidence 667899999999999999999999998864322 2211100 00011100 000 1666665554444
Q ss_pred -HhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHH-Hhhh
Q 002722 731 -KGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTA-LAHE 787 (888)
Q Consensus 731 -~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~-~~~~ 787 (888)
..+.+|+++|||||++|+|+.....+ ..++..+.++.+.++|++||+++... ++++
T Consensus 84 ral~~~p~lllLDEPts~LD~~~~~~l-~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~ 141 (177)
T cd03222 84 AALLRNATFYLFDEPSAYLDIEQRLNA-ARAIRRLSEEGKKTALVVEHDLAVLDYLSDR 141 (177)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHH-HHHHHHHHHcCCCEEEEEECCHHHHHHhCCE
Confidence 45789999999999999999988888 44555555523489999999987664 5655
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-16 Score=166.41 Aligned_cols=141 Identities=16% Similarity=0.106 Sum_probs=98.0
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh--------------------hcCccccccccc--ccHHH-
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA--------------------QVGSFVPCDRAS--ISVRD- 700 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a--------------------~~g~~vp~~~~~--~~~~d- 700 (888)
.+.++++|++.+|++++|+||||||||||+++++++.... +.-.|+|....- .++.+
T Consensus 28 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~n 107 (226)
T cd03248 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDN 107 (226)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHHHH
Confidence 5788999999999999999999999999999998764211 111233332210 01111
Q ss_pred -----------------------HHHHhc--CCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHH
Q 002722 701 -----------------------CIFARV--GAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGF 754 (888)
Q Consensus 701 -----------------------~i~~~~--~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~ 754 (888)
.++..+ |..+.+......+|+++++...+++ .+.+|+++|||||++|+|+....
T Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 187 (226)
T cd03248 108 IAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQ 187 (226)
T ss_pred hccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 122233 4444445556677777666655544 57899999999999999999888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 755 GLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
.+ ..++..+.+ +.++|++||++++...+++
T Consensus 188 ~l-~~~l~~~~~--~~tii~~sh~~~~~~~~d~ 217 (226)
T cd03248 188 QV-QQALYDWPE--RRTVLVIAHRLSTVERADQ 217 (226)
T ss_pred HH-HHHHHHHcC--CCEEEEEECCHHHHHhCCE
Confidence 88 555556654 5899999999988766655
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.4e-16 Score=185.33 Aligned_cols=143 Identities=14% Similarity=0.105 Sum_probs=105.6
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh---------------------hcCcccccccc---cccH
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA---------------------QVGSFVPCDRA---SISV 698 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a---------------------~~g~~vp~~~~---~~~~ 698 (888)
..+.++++|++.+|++++|+||||||||||||+++++.... +.-.|+|+... .+++
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 96 (501)
T PRK10762 17 VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTI 96 (501)
T ss_pred eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcH
Confidence 35778999999999999999999999999999998753210 10123333210 0111
Q ss_pred -------------------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhh
Q 002722 699 -------------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYD 752 (888)
Q Consensus 699 -------------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~ 752 (888)
+..++.++|..+......+++|+++++...+++ .+.+|+++||||||+|+|+..
T Consensus 97 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~ 176 (501)
T PRK10762 97 AENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTE 176 (501)
T ss_pred HHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHH
Confidence 223456666666566667888888877766665 478999999999999999998
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 753 GFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 753 ~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
...+ +.++..+.+ .|.++|++||+.+.. .++++
T Consensus 177 ~~~l-~~~l~~l~~-~~~tvii~sHd~~~~~~~~d~ 210 (501)
T PRK10762 177 TESL-FRVIRELKS-QGRGIVYISHRLKEIFEICDD 210 (501)
T ss_pred HHHH-HHHHHHHHH-CCCEEEEEeCCHHHHHHhCCE
Confidence 8888 667777776 589999999997765 57776
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3e-16 Score=184.98 Aligned_cols=143 Identities=17% Similarity=0.109 Sum_probs=105.7
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh--------------------h-hcCcccccccc---cccH
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------A-QVGSFVPCDRA---SISV 698 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~--------------------a-~~g~~vp~~~~---~~~~ 698 (888)
..+.++++|++.+|++++|+||||||||||||+++++... . +.-.|+|+... .+++
T Consensus 18 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv 97 (510)
T PRK09700 18 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTV 97 (510)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcH
Confidence 3577899999999999999999999999999999875421 0 11124443311 0111
Q ss_pred ----------------------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCC
Q 002722 699 ----------------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTS 749 (888)
Q Consensus 699 ----------------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~slvllDEp~~gtd 749 (888)
+..++.++|..+......+++|+++++...+.+. +.+|+++||||||+|+|
T Consensus 98 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD 177 (510)
T PRK09700 98 LENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLT 177 (510)
T ss_pred HHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence 1234555666655666678899888877666654 78999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 750 TYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 750 ~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
+.....+ ..++..+.+ .|.++|++||+.+.. .++++
T Consensus 178 ~~~~~~l-~~~l~~l~~-~g~tiiivsHd~~~~~~~~d~ 214 (510)
T PRK09700 178 NKEVDYL-FLIMNQLRK-EGTAIVYISHKLAEIRRICDR 214 (510)
T ss_pred HHHHHHH-HHHHHHHHh-CCCEEEEEeCCHHHHHHhCCE
Confidence 9888888 667777776 589999999998765 57776
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.2e-16 Score=166.58 Aligned_cols=142 Identities=15% Similarity=0.120 Sum_probs=99.2
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh----hcC---------------------cccccccc---
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA----QVG---------------------SFVPCDRA--- 694 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a----~~g---------------------~~vp~~~~--- 694 (888)
..+.++++|++.+|++++|+||||||||||+++++++.-.. ..| .|+|....
T Consensus 16 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~ 95 (250)
T PRK14247 16 VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIP 95 (250)
T ss_pred eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCC
Confidence 35778999999999999999999999999999999864210 011 23443321
Q ss_pred cccHHHH-----------------------HHHhcCCc----hhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCC
Q 002722 695 SISVRDC-----------------------IFARVGAG----DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGR 746 (888)
Q Consensus 695 ~~~~~d~-----------------------i~~~~~~~----d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~ 746 (888)
..++.+. ++..+|.. +.+......+|+++++...+++ .+.+|+++|||||++
T Consensus 96 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~ 175 (250)
T PRK14247 96 NLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTA 175 (250)
T ss_pred CCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 1222222 22333432 1234445678877776655554 478999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 747 GTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 747 gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
|+|+.....+ ..+++.+.+ +.++|++||+++.. +++++
T Consensus 176 ~LD~~~~~~l-~~~l~~~~~--~~tiii~sH~~~~~~~~~d~ 214 (250)
T PRK14247 176 NLDPENTAKI-ESLFLELKK--DMTIVLVTHFPQQAARISDY 214 (250)
T ss_pred cCCHHHHHHH-HHHHHHHhc--CCEEEEEeCCHHHHHHhcCE
Confidence 9999988888 556666653 78999999998765 57776
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.1e-16 Score=156.90 Aligned_cols=156 Identities=15% Similarity=0.152 Sum_probs=110.6
Q ss_pred cccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh--------------------hhcC-cccccccc---ccc
Q 002722 642 VNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVG-SFVPCDRA---SIS 697 (888)
Q Consensus 642 ~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~--------------------a~~g-~~vp~~~~---~~~ 697 (888)
...+..+++|+++.|+++.|+||||+||||+||+|++++-. +..| +|||.... .++
T Consensus 15 ~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LT 94 (237)
T COG0410 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLT 94 (237)
T ss_pred ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCc
Confidence 34677899999999999999999999999999999876421 1122 35554331 111
Q ss_pred H--------------------HHHHHHhcC-CchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHH
Q 002722 698 V--------------------RDCIFARVG-AGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFG 755 (888)
Q Consensus 698 ~--------------------~d~i~~~~~-~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~ 755 (888)
+ .+.+|..+- +.+...+...++|++.+|...|.+ .+++|+++|||||+-|+.|.-...
T Consensus 95 VeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~ 174 (237)
T COG0410 95 VEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEE 174 (237)
T ss_pred HHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHH
Confidence 1 333444443 344455556778877666655544 478999999999999999998888
Q ss_pred HHHHHHHHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEEE
Q 002722 756 LAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSA 807 (888)
Q Consensus 756 i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (888)
| ..+++.+.++.|.+|+++-++...+ +++|+ .-.+.++++..
T Consensus 175 I-~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr---------~yvle~Griv~ 217 (237)
T COG0410 175 I-FEAIKELRKEGGMTILLVEQNARFALEIADR---------GYVLENGRIVL 217 (237)
T ss_pred H-HHHHHHHHHcCCcEEEEEeccHHHHHHhhCE---------EEEEeCCEEEE
Confidence 8 6667778865588999999997776 57777 44455555544
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4e-16 Score=168.22 Aligned_cols=142 Identities=15% Similarity=0.110 Sum_probs=98.8
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh----hhcC-----------------------ccccccccc
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----AQVG-----------------------SFVPCDRAS 695 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~----a~~g-----------------------~~vp~~~~~ 695 (888)
..+.++++|++.+|++++|+||||||||||||+++++... ...| .|+|+....
T Consensus 32 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 111 (267)
T PRK14235 32 KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNP 111 (267)
T ss_pred EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCC
Confidence 3577899999999999999999999999999999886532 0111 233433210
Q ss_pred --ccHHH-----------------------HHHHhcCCch----hhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCC
Q 002722 696 --ISVRD-----------------------CIFARVGAGD----CQLRGVSTFMQEMLETASILK-GATDRSLIIIDELG 745 (888)
Q Consensus 696 --~~~~d-----------------------~i~~~~~~~d----~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~ 745 (888)
.++.+ .++..+|..+ .+......+|+++++...+.+ .+.+|+++|||||+
T Consensus 112 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt 191 (267)
T PRK14235 112 FPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPC 191 (267)
T ss_pred CCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 11222 2233344422 233445677877766655554 47899999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 746 RGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 746 ~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
+|+|+.....+ ..+++.+.+ +.++|++||+.+.. .++++
T Consensus 192 ~~LD~~~~~~l-~~~L~~l~~--~~tiiivtH~~~~~~~~~d~ 231 (267)
T PRK14235 192 SALDPIATAKV-EELIDELRQ--NYTIVIVTHSMQQAARVSQR 231 (267)
T ss_pred cCCCHHHHHHH-HHHHHHHhc--CCeEEEEEcCHHHHHhhCCE
Confidence 99999888887 566666654 68999999998766 56666
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.4e-16 Score=165.55 Aligned_cols=142 Identities=20% Similarity=0.165 Sum_probs=101.4
Q ss_pred ccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhh------------------cCccccccccc---ccH-----
Q 002722 645 IPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ------------------VGSFVPCDRAS---ISV----- 698 (888)
Q Consensus 645 v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~------------------~g~~vp~~~~~---~~~----- 698 (888)
+.++++|++.+|++++|+||||||||||+|+++++..... .-.++|+.... .++
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~ 93 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIA 93 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHH
Confidence 5678999999999999999999999999999987532110 11233333211 111
Q ss_pred ----------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhHHHHHHHHH
Q 002722 699 ----------------RDCIFARVGAGDCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYDGFGLAWAIC 761 (888)
Q Consensus 699 ----------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il-~~~~~~slvllDEp~~gtd~~~~~~i~~~il 761 (888)
+..++..+|..+.+......+|+++++...+. ..+.+|+++|||||++|+|+.....+ +.++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l-~~~l 172 (235)
T cd03299 94 YGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKL-REEL 172 (235)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHH-HHHH
Confidence 12234556666556666677887766655544 45789999999999999999888887 6677
Q ss_pred HHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 762 EHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 762 ~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
+.+..+.|+++|++||+.+.. +++++
T Consensus 173 ~~~~~~~~~tili~tH~~~~~~~~~d~ 199 (235)
T cd03299 173 KKIRKEFGVTVLHVTHDFEEAWALADK 199 (235)
T ss_pred HHHHHhcCCEEEEEecCHHHHHHhCCE
Confidence 777653489999999998764 56776
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=5e-16 Score=167.70 Aligned_cols=142 Identities=17% Similarity=0.168 Sum_probs=98.0
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHh-h---hhcC-----------------------ccccccccc
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL-M---AQVG-----------------------SFVPCDRAS 695 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~-~---a~~g-----------------------~~vp~~~~~ 695 (888)
..+.++++|++.+|++++|+||||||||||||+++++.. . ...| .|+|+....
T Consensus 34 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 113 (268)
T PRK14248 34 KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNP 113 (268)
T ss_pred ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCcc
Confidence 457889999999999999999999999999999988531 0 0111 233333211
Q ss_pred --ccHHHHH----------------------HHhcCCc----hhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCC
Q 002722 696 --ISVRDCI----------------------FARVGAG----DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGR 746 (888)
Q Consensus 696 --~~~~d~i----------------------~~~~~~~----d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~ 746 (888)
.++.+.+ +..++.. +......+.+|+++++...+++ .+.+|+++|||||++
T Consensus 114 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~ 193 (268)
T PRK14248 114 FPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPAS 193 (268)
T ss_pred CcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCc
Confidence 1222221 2222221 1233455678877777655554 478999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 747 GTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 747 gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
|+|+.....+ ..++..+.+ +.++|++||+.+.. +++++
T Consensus 194 ~LD~~~~~~l-~~~l~~~~~--~~tiii~tH~~~~~~~~~d~ 232 (268)
T PRK14248 194 ALDPISNAKI-EELITELKE--EYSIIIVTHNMQQALRVSDR 232 (268)
T ss_pred ccCHHHHHHH-HHHHHHHhc--CCEEEEEEeCHHHHHHhCCE
Confidence 9999988888 666667754 58999999998754 57776
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.6e-16 Score=167.76 Aligned_cols=152 Identities=14% Similarity=0.057 Sum_probs=104.6
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh----hhc-----------------------Cccccccccc
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----AQV-----------------------GSFVPCDRAS 695 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~----a~~-----------------------g~~vp~~~~~ 695 (888)
..+.++++|++.+|++++|+||||||||||||+++++... ..- -.|+|.....
T Consensus 33 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 112 (267)
T PRK14237 33 KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNP 112 (267)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcc
Confidence 4678899999999999999999999999999999987531 011 1334443211
Q ss_pred --ccHHHHH----------------------HHhcCCc----hhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCC
Q 002722 696 --ISVRDCI----------------------FARVGAG----DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGR 746 (888)
Q Consensus 696 --~~~~d~i----------------------~~~~~~~----d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~ 746 (888)
.++.+.+ +.++++. +.+......+|+++++...+++ .+.+|+++|||||++
T Consensus 113 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~ 192 (267)
T PRK14237 113 FAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPAS 192 (267)
T ss_pred ccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 1222221 2233332 2234455678877766655554 478999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEE
Q 002722 747 GTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 747 gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
|+|+.....+ ..++..+.+ +.++|++||+++.. +++++ +..+.++++.
T Consensus 193 ~LD~~~~~~l-~~~l~~~~~--~~tiii~tH~~~~~~~~~d~---------i~~l~~G~i~ 241 (267)
T PRK14237 193 ALDPISTMQL-EETMFELKK--NYTIIIVTHNMQQAARASDY---------TAFFYLGDLI 241 (267)
T ss_pred cCCHHHHHHH-HHHHHHHhc--CCEEEEEecCHHHHHHhcCE---------EEEEECCEEE
Confidence 9999888877 556666653 68999999998765 67877 5555555543
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.6e-16 Score=166.65 Aligned_cols=141 Identities=16% Similarity=0.055 Sum_probs=98.0
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh--hhc---------------------Cccccccccc--ccH
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--AQV---------------------GSFVPCDRAS--ISV 698 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~--a~~---------------------g~~vp~~~~~--~~~ 698 (888)
.+.++++|++.+|++++|+||||||||||+|+++++.-. ... -.|+|+...- .++
T Consensus 16 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~tv 95 (246)
T PRK14269 16 QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSI 95 (246)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccccccH
Confidence 567799999999999999999999999999999886310 001 1244433210 011
Q ss_pred H-----------------------HHHHHhcCCc----hhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCCh
Q 002722 699 R-----------------------DCIFARVGAG----DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTST 750 (888)
Q Consensus 699 ~-----------------------d~i~~~~~~~----d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~ 750 (888)
. ..++.+++.. +......+.+|+++++...+.+ .+.+|+++|||||++|+|+
T Consensus 96 ~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~ 175 (246)
T PRK14269 96 YENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDP 175 (246)
T ss_pred HHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 1 1234445553 2234455667777666655554 4789999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 751 YDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 751 ~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
.....+ ..++..+.+ +.++|++||+.+.. .++++
T Consensus 176 ~~~~~l-~~~l~~~~~--~~tiii~tH~~~~~~~~~d~ 210 (246)
T PRK14269 176 ISSGVI-EELLKELSH--NLSMIMVTHNMQQGKRVADY 210 (246)
T ss_pred HHHHHH-HHHHHHHhC--CCEEEEEecCHHHHHhhCcE
Confidence 888877 556666653 78999999998754 57776
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.4e-16 Score=165.52 Aligned_cols=139 Identities=19% Similarity=0.114 Sum_probs=92.8
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHH-hhhhcC----------------------cccccccccccH--
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI-LMAQVG----------------------SFVPCDRASISV-- 698 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~-~~a~~g----------------------~~vp~~~~~~~~-- 698 (888)
.+.++++|++.+|++++|+||||||||||+|+++++. .....| .|+|......+.
T Consensus 15 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 94 (248)
T PRK09580 15 AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVS 94 (248)
T ss_pred eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccchh
Confidence 4678999999999999999999999999999999873 111111 122222110000
Q ss_pred -----------------------------HHHHHHhcCCch-hhhhcc-chhHHHHHHHHHHHH-hCCCCcEEEEeCCCC
Q 002722 699 -----------------------------RDCIFARVGAGD-CQLRGV-STFMQEMLETASILK-GATDRSLIIIDELGR 746 (888)
Q Consensus 699 -----------------------------~d~i~~~~~~~d-~~~~~~-s~f~~e~~~~~~il~-~~~~~slvllDEp~~ 746 (888)
++.++..++..+ ...... +.+|+++++...+.+ .+.+|+++|||||++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt~ 174 (248)
T PRK09580 95 NQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDS 174 (248)
T ss_pred HHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 011122222211 111112 257777766655554 478999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHHH
Q 002722 747 GTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTAL 784 (888)
Q Consensus 747 gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~ 784 (888)
|+|+.....+ ..++..+.+ .++++|++||++++...
T Consensus 175 ~LD~~~~~~l-~~~l~~l~~-~~~tiii~sH~~~~~~~ 210 (248)
T PRK09580 175 GLDIDALKIV-ADGVNSLRD-GKRSFIIVTHYQRILDY 210 (248)
T ss_pred cCCHHHHHHH-HHHHHHHHh-CCCEEEEEeCCHHHHHh
Confidence 9999888888 556667765 58999999999887654
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.7e-16 Score=161.47 Aligned_cols=141 Identities=15% Similarity=0.092 Sum_probs=98.7
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhh----------------cCcccccccc---cccH------
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ----------------VGSFVPCDRA---SISV------ 698 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~----------------~g~~vp~~~~---~~~~------ 698 (888)
.+.+ ++|++.+|++++|+||||||||||+|+++++..... .-.|+|.... ..++
T Consensus 15 ~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~ 93 (195)
T PRK13541 15 NLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKF 93 (195)
T ss_pred EEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHH
Confidence 3444 889999999999999999999999999987632110 0123332211 1111
Q ss_pred ----------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhc
Q 002722 699 ----------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEE 767 (888)
Q Consensus 699 ----------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~ 767 (888)
...++.+++..+......+.+|+++++...+.+ .+.+|+++|+|||++|+|+.....+ +.++....+
T Consensus 94 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l-~~~l~~~~~- 171 (195)
T PRK13541 94 WSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLL-NNLIVMKAN- 171 (195)
T ss_pred HHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHHHHHHHh-
Confidence 123345556666566667788877766655554 4789999999999999999887777 556655554
Q ss_pred CCCeEEEEecChhHHHHhhh
Q 002722 768 IRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 768 ~~~~~l~~TH~~~l~~~~~~ 787 (888)
.+.++|++||+.+....++.
T Consensus 172 ~~~tiii~sh~~~~i~~~~~ 191 (195)
T PRK13541 172 SGGIVLLSSHLESSIKSAQI 191 (195)
T ss_pred CCCEEEEEeCCccccchhhe
Confidence 58999999999877655543
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.6e-16 Score=184.72 Aligned_cols=143 Identities=12% Similarity=0.022 Sum_probs=104.2
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHh-hhhc-------------------------------------
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL-MAQV------------------------------------- 685 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~-~a~~------------------------------------- 685 (888)
.+.++++|++.+|++++|+||||||||||||+++++.. ...-
T Consensus 14 ~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~ 93 (520)
T TIGR03269 14 EVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEE 93 (520)
T ss_pred EeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccccc
Confidence 46779999999999999999999999999999998741 0000
Q ss_pred -----------------Ccccccc-cc---cccH---------------------HHHHHHhcCCchhhhhccchhHHHH
Q 002722 686 -----------------GSFVPCD-RA---SISV---------------------RDCIFARVGAGDCQLRGVSTFMQEM 723 (888)
Q Consensus 686 -----------------g~~vp~~-~~---~~~~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~ 723 (888)
-.|+|+. .. .... ++.++..+|..+......+++|+++
T Consensus 94 ~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq 173 (520)
T TIGR03269 94 VDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGE 173 (520)
T ss_pred hhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccCCHHH
Confidence 1233332 10 0111 1234555666655666678899888
Q ss_pred HHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 724 LETASILKG-ATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 724 ~~~~~il~~-~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
++...++++ +.+|+++||||||+|+|+.....+ ..+++.+.++.|.++|++||+.+.. +++++
T Consensus 174 ~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l-~~~l~~l~~~~g~tviivtHd~~~~~~~~d~ 238 (520)
T TIGR03269 174 KQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLV-HNALEEAVKASGISMVLTSHWPEVIEDLSDK 238 (520)
T ss_pred HHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHH-HHHHHHHHHhcCcEEEEEeCCHHHHHHhcCE
Confidence 777666654 789999999999999999988888 5666666543589999999998765 56765
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.8e-16 Score=166.34 Aligned_cols=142 Identities=21% Similarity=0.171 Sum_probs=97.4
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHH-hhhhcC----------------------ccccccccc---cc
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI-LMAQVG----------------------SFVPCDRAS---IS 697 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~-~~a~~g----------------------~~vp~~~~~---~~ 697 (888)
.+.++++|++.+|++++|+||||||||||+|+++++. ....-| .++|+.... ..
T Consensus 21 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~ 100 (252)
T CHL00131 21 EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVS 100 (252)
T ss_pred EeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEecccccccccc
Confidence 5788999999999999999999999999999999852 111111 122222100 00
Q ss_pred H----------------------------HHHHHHhcCCch-hhhhccc-hhHHHHHHHHHHHH-hCCCCcEEEEeCCCC
Q 002722 698 V----------------------------RDCIFARVGAGD-CQLRGVS-TFMQEMLETASILK-GATDRSLIIIDELGR 746 (888)
Q Consensus 698 ~----------------------------~d~i~~~~~~~d-~~~~~~s-~f~~e~~~~~~il~-~~~~~slvllDEp~~ 746 (888)
. +..++..+|..+ ....... .+|+++++...+.+ .+.+|+++|||||++
T Consensus 101 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~ 180 (252)
T CHL00131 101 NADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDS 180 (252)
T ss_pred HHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcc
Confidence 0 122344455542 2333333 47777666655444 578999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHH-H-hhh
Q 002722 747 GTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTA-L-AHE 787 (888)
Q Consensus 747 gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~-~-~~~ 787 (888)
|+|+.....+ ..++..+.+ .|.++|++||++++.. + +++
T Consensus 181 ~LD~~~~~~l-~~~l~~~~~-~g~tii~~tH~~~~~~~~~~d~ 221 (252)
T CHL00131 181 GLDIDALKII-AEGINKLMT-SENSIILITHYQRLLDYIKPDY 221 (252)
T ss_pred cCCHHHHHHH-HHHHHHHHh-CCCEEEEEecCHHHHHhhhCCE
Confidence 9999988888 566666665 5899999999988775 3 555
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.2e-16 Score=172.18 Aligned_cols=152 Identities=14% Similarity=0.076 Sum_probs=110.9
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh------------------------hhcCcccccccc-----
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM------------------------AQVGSFVPCDRA----- 694 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~------------------------a~~g~~vp~~~~----- 694 (888)
.+.++++|++.+|++++|+||||||||||+++++++... .++ .|||+...
T Consensus 29 ~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i-~~v~Q~~~~~l~p 107 (327)
T PRK11308 29 KALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKI-QIVFQNPYGSLNP 107 (327)
T ss_pred eEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCE-EEEEcCchhhcCC
Confidence 578899999999999999999999999999999865311 111 24444321
Q ss_pred ccc----------------------HHHHHHHhcCCch-hhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCCh
Q 002722 695 SIS----------------------VRDCIFARVGAGD-CQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTST 750 (888)
Q Consensus 695 ~~~----------------------~~d~i~~~~~~~d-~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~ 750 (888)
.+. .+..++.++|+.+ ........+|++|+|...|.+ .+.+|+++|+||||+|+|+
T Consensus 108 ~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~ 187 (327)
T PRK11308 108 RKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDV 187 (327)
T ss_pred ccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCH
Confidence 001 1223456667643 445666788888887766655 4789999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCeEEEEecChhHHH-HhhhccccccccccccEeEEEEE
Q 002722 751 YDGFGLAWAICEHLVEEIRAPTLFATHFHELTA-LAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 751 ~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~-~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
.....+ ..++..+.++.|.++|++|||++++. ++++ +..+..+++.
T Consensus 188 ~~~~~i-~~lL~~l~~~~g~til~iTHdl~~~~~~adr---------v~vm~~G~iv 234 (327)
T PRK11308 188 SVQAQV-LNLMMDLQQELGLSYVFISHDLSVVEHIADE---------VMVMYLGRCV 234 (327)
T ss_pred HHHHHH-HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCE---------EEEEECCEEE
Confidence 988888 55666666546899999999988874 7887 5556666554
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.8e-16 Score=165.42 Aligned_cols=141 Identities=16% Similarity=0.057 Sum_probs=94.6
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhh--------------------cCccccccccc--ccHHHH
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ--------------------VGSFVPCDRAS--ISVRDC 701 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~--------------------~g~~vp~~~~~--~~~~d~ 701 (888)
.+.++++|++.+|++++|+||||||||||||+++++....+ .-.|+|....- .++.+.
T Consensus 15 ~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~n 94 (236)
T cd03253 15 PVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYN 94 (236)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHHHH
Confidence 46778999999999999999999999999999987642111 11234433211 111111
Q ss_pred H---------------HHhcCCchh-----------hhhccchhHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhHH
Q 002722 702 I---------------FARVGAGDC-----------QLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYDGF 754 (888)
Q Consensus 702 i---------------~~~~~~~d~-----------~~~~~s~f~~e~~~~~~il-~~~~~~slvllDEp~~gtd~~~~~ 754 (888)
+ ....+..+. .......+|+++++...++ ..+.+|+++|||||++|+|+....
T Consensus 95 l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~ 174 (236)
T cd03253 95 IRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTER 174 (236)
T ss_pred HhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 1 111222221 1122346776666655544 458899999999999999998888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 755 GLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
.+ ..++..+.+ |.++|++||+.+....+++
T Consensus 175 ~l-~~~l~~~~~--~~tiii~sh~~~~~~~~d~ 204 (236)
T cd03253 175 EI-QAALRDVSK--GRTTIVIAHRLSTIVNADK 204 (236)
T ss_pred HH-HHHHHHhcC--CCEEEEEcCCHHHHHhCCE
Confidence 87 556666653 8899999999887766665
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.6e-16 Score=184.01 Aligned_cols=143 Identities=15% Similarity=0.112 Sum_probs=105.5
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh-h---------------------hcCccccccc------c
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-A---------------------QVGSFVPCDR------A 694 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~-a---------------------~~g~~vp~~~------~ 694 (888)
..+.++++|++.+|++++|+||||||||||+|+++++... . +.-.|+|+.. .
T Consensus 275 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 354 (506)
T PRK13549 275 IKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVP 354 (506)
T ss_pred cccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcC
Confidence 3578899999999999999999999999999999876421 0 0012444431 0
Q ss_pred cccH--------------------------HHHHHHhcCCc-hhhhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCC
Q 002722 695 SISV--------------------------RDCIFARVGAG-DCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGR 746 (888)
Q Consensus 695 ~~~~--------------------------~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~~-~~~~slvllDEp~~ 746 (888)
.+++ ++.++.+++.. +.......++|+++++...+++. +.+|.++||||||+
T Consensus 355 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~ 434 (506)
T PRK13549 355 VMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTR 434 (506)
T ss_pred CCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCC
Confidence 1111 22345556664 34556667888888777666654 78999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 747 GTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 747 gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
|+|+.....+ +.++..+.+ .|.++|++||+++.. ++|++
T Consensus 435 ~LD~~~~~~l-~~~l~~l~~-~g~tvi~~sHd~~~~~~~~d~ 474 (506)
T PRK13549 435 GIDVGAKYEI-YKLINQLVQ-QGVAIIVISSELPEVLGLSDR 474 (506)
T ss_pred CcCHhHHHHH-HHHHHHHHH-CCCEEEEECCCHHHHHHhCCE
Confidence 9999888888 777777876 589999999998765 57776
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.6e-16 Score=165.07 Aligned_cols=142 Identities=16% Similarity=0.120 Sum_probs=96.6
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh-------h--------------------hcCcccccccc-
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-------A--------------------QVGSFVPCDRA- 694 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~-------a--------------------~~g~~vp~~~~- 694 (888)
..+.++++|++.+|++++|+||||||||||||+++++.-. + +.-.|+|....
T Consensus 16 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14262 16 KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTP 95 (250)
T ss_pred ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCcc
Confidence 3567899999999999999999999999999999975421 0 11123333321
Q ss_pred -cccHHHHH----------------------HHhcCCch----hhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCC
Q 002722 695 -SISVRDCI----------------------FARVGAGD----CQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGR 746 (888)
Q Consensus 695 -~~~~~d~i----------------------~~~~~~~d----~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~ 746 (888)
..++.+.+ +..++..+ ........+|+++++...+++ .+.+|+++|||||++
T Consensus 96 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~ 175 (250)
T PRK14262 96 FPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTS 175 (250)
T ss_pred CcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCcc
Confidence 11222211 22223221 133345567777666655554 478999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhH-HHHhhh
Q 002722 747 GTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHEL-TALAHE 787 (888)
Q Consensus 747 gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l-~~~~~~ 787 (888)
|+|+.....+ +.++..+.+ +.++|++||+++. ..++++
T Consensus 176 ~LD~~~~~~l-~~~l~~~~~--~~tili~sH~~~~~~~~~d~ 214 (250)
T PRK14262 176 ALDPIATQRI-EKLLEELSE--NYTIVIVTHNIGQAIRIADY 214 (250)
T ss_pred ccCHHHHHHH-HHHHHHHhc--CcEEEEEeCCHHHHHHhCCE
Confidence 9999988888 666666654 6899999999874 467776
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.8e-16 Score=160.46 Aligned_cols=142 Identities=13% Similarity=0.107 Sum_probs=92.9
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh--hhcC--------------------cccccccc---ccc
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--AQVG--------------------SFVPCDRA---SIS 697 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~--a~~g--------------------~~vp~~~~---~~~ 697 (888)
..+.++++|++.+|++++|+||||||||||+++++++... ...| .|+|.... ..+
T Consensus 20 ~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 99 (202)
T cd03233 20 IPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLT 99 (202)
T ss_pred ceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCc
Confidence 3466789999999999999999999999999999987541 1112 12232211 123
Q ss_pred HHHHHHHhcCCchhhhhccchhHHHHHHH-HHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEE-
Q 002722 698 VRDCIFARVGAGDCQLRGVSTFMQEMLET-ASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFA- 775 (888)
Q Consensus 698 ~~d~i~~~~~~~d~~~~~~s~f~~e~~~~-~~il~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~- 775 (888)
+.+.+...... ........+|+++++. +.+...+.+|+++|||||++|+|+.....+ +.+++.+.++.+.++|++
T Consensus 100 v~~~l~~~~~~--~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~-~~~l~~~~~~~~~t~ii~~ 176 (202)
T cd03233 100 VRETLDFALRC--KGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEI-LKCIRTMADVLKTTTFVSL 176 (202)
T ss_pred HHHHHhhhhhh--ccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHH-HHHHHHHHHhCCCEEEEEE
Confidence 33332211001 0233445677666555 444455789999999999999999888888 666677765336666665
Q ss_pred ecCh-hHHHHhhh
Q 002722 776 THFH-ELTALAHE 787 (888)
Q Consensus 776 TH~~-~l~~~~~~ 787 (888)
+|+. ++.+++++
T Consensus 177 ~h~~~~~~~~~d~ 189 (202)
T cd03233 177 YQASDEIYDLFDK 189 (202)
T ss_pred cCCHHHHHHhCCe
Confidence 5554 45567777
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.2e-16 Score=172.40 Aligned_cols=153 Identities=14% Similarity=0.024 Sum_probs=109.3
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh---------------------------hcCcccccccc--
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA---------------------------QVGSFVPCDRA-- 694 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a---------------------------~~g~~vp~~~~-- 694 (888)
.+.++++|++.+|++++|+|+||||||||+++++++.-.. ..-.|||++..
T Consensus 30 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~ 109 (330)
T PRK09473 30 TAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTS 109 (330)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhh
Confidence 4678999999999999999999999999999998765321 01124444421
Q ss_pred ---cccH----------------------HHHHHHhcCCch---hhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCC
Q 002722 695 ---SISV----------------------RDCIFARVGAGD---CQLRGVSTFMQEMLETASILK-GATDRSLIIIDELG 745 (888)
Q Consensus 695 ---~~~~----------------------~d~i~~~~~~~d---~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~ 745 (888)
.+.+ +..++..+|..+ .+......+|++|+|...|.+ .+.+|+|+|+||||
T Consensus 110 l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPt 189 (330)
T PRK09473 110 LNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPT 189 (330)
T ss_pred cCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 0111 112344455532 223456678888877766555 47899999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEE
Q 002722 746 RGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 746 ~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
+|+|+.....+ ..++..+.++.|.++||+|||++++ .++|+ +..+..+.+.
T Consensus 190 s~LD~~~~~~i-~~lL~~l~~~~g~til~iTHdl~~~~~~~Dr---------i~vm~~G~iv 241 (330)
T PRK09473 190 TALDVTVQAQI-MTLLNELKREFNTAIIMITHDLGVVAGICDK---------VLVMYAGRTM 241 (330)
T ss_pred ccCCHHHHHHH-HHHHHHHHHHcCCEEEEEECCHHHHHHhCCE---------EEEEECCEEE
Confidence 99999988888 5666777664589999999998876 47887 5556666654
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.2e-16 Score=165.36 Aligned_cols=141 Identities=17% Similarity=0.114 Sum_probs=96.7
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh----hhcC-----------------------ccccccccc-
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----AQVG-----------------------SFVPCDRAS- 695 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~----a~~g-----------------------~~vp~~~~~- 695 (888)
.+.++++|++.+|++++|+||||||||||+|+++++... ...| .|+|++...
T Consensus 18 ~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (251)
T PRK14251 18 EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPF 97 (251)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccC
Confidence 567799999999999999999999999999999987530 0111 133332210
Q ss_pred -ccHHH----------------------HHHHhcCCc----hhhhhccchhHHHHHHHHHHH-HhCCCCcEEEEeCCCCC
Q 002722 696 -ISVRD----------------------CIFARVGAG----DCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRG 747 (888)
Q Consensus 696 -~~~~d----------------------~i~~~~~~~----d~~~~~~s~f~~e~~~~~~il-~~~~~~slvllDEp~~g 747 (888)
.++.+ .++..++.. +.+......+|+++++...+. ..+.+|+++|||||++|
T Consensus 98 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~ 177 (251)
T PRK14251 98 PFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSA 177 (251)
T ss_pred CCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcc
Confidence 11222 122333432 223444566777666655554 45789999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
+|+.....+ ..+++.+.+ +.++|++||+.+.. +++++
T Consensus 178 LD~~~~~~l-~~~l~~~~~--~~tiiiisH~~~~~~~~~d~ 215 (251)
T PRK14251 178 LDPISSSEI-EETLMELKH--QYTFIMVTHNLQQAGRISDQ 215 (251)
T ss_pred CCHHHHHHH-HHHHHHHHc--CCeEEEEECCHHHHHhhcCE
Confidence 999888877 566666654 68999999998764 56776
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.9e-16 Score=165.08 Aligned_cols=142 Identities=18% Similarity=0.162 Sum_probs=98.4
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHh--h-----h--------------------hcCcccccccc-
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL--M-----A--------------------QVGSFVPCDRA- 694 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~--~-----a--------------------~~g~~vp~~~~- 694 (888)
..+.++++|++.+|++++|+||||||||||+|+++++.- . + ..-.|+|+...
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14256 17 NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNP 96 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCC
Confidence 357889999999999999999999999999999998742 1 0 00123443321
Q ss_pred --cccHHH----------------------HHHHhcCCc----hhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCC
Q 002722 695 --SISVRD----------------------CIFARVGAG----DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELG 745 (888)
Q Consensus 695 --~~~~~d----------------------~i~~~~~~~----d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~ 745 (888)
..++.+ .++.+++.. +........+|+++++...+.+ .+.+|+++|||||+
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~ 176 (252)
T PRK14256 97 FPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPA 176 (252)
T ss_pred CCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 111111 223334432 1223445567777766655554 47899999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 746 RGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 746 ~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
+|+|+.....+ ..+++.+.+ +.++|++||+.+.. +++++
T Consensus 177 ~gLD~~~~~~l-~~~l~~~~~--~~tiiivsH~~~~~~~~~d~ 216 (252)
T PRK14256 177 SALDPISTLKI-EELIEELKE--KYTIIIVTHNMQQAARVSDY 216 (252)
T ss_pred ccCCHHHHHHH-HHHHHHHHh--CCcEEEEECCHHHHHhhCCE
Confidence 99999888888 566677765 57999999998765 67776
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-16 Score=155.06 Aligned_cols=120 Identities=14% Similarity=0.049 Sum_probs=82.6
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhcCc-ccccccccccHHHHHHHhcCCchhhhhccchhHHH
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGS-FVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQE 722 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~g~-~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e 722 (888)
.+.++++|++.+|++++|+||||||||||+++++++.... .|. ++.. ...++++ ..+|.+
T Consensus 14 ~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~~-~~~i~~~-----------------~~lS~G 74 (144)
T cd03221 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD-EGIVTWGS-TVKIGYF-----------------EQLSGG 74 (144)
T ss_pred eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC-ceEEEECC-eEEEEEE-----------------ccCCHH
Confidence 3556888999999999999999999999999998754322 121 1111 0011110 115555
Q ss_pred HHHH-HHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 723 MLET-ASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 723 ~~~~-~~il~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
+++. +.+...+.+|+++|+|||++|+|+.....+ ..+++.+ +.++|++||+++.. .++++
T Consensus 75 ~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l-~~~l~~~----~~til~~th~~~~~~~~~d~ 136 (144)
T cd03221 75 EKMRLALAKLLLENPNLLLLDEPTNHLDLESIEAL-EEALKEY----PGTVILVSHDRYFLDQVATK 136 (144)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHH-HHHHHHc----CCEEEEEECCHHHHHHhCCE
Confidence 5554 444445789999999999999999887777 4444433 57899999998766 45665
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.5e-16 Score=146.91 Aligned_cols=153 Identities=18% Similarity=0.123 Sum_probs=116.3
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh-------------------------hhcCc------cc--
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-------------------------AQVGS------FV-- 689 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~-------------------------a~~g~------~v-- 689 (888)
-.|..+++|.++.|+.++|+||+||||||||-.++++-.. .++|. .+
T Consensus 23 l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ 102 (228)
T COG4181 23 LSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPN 102 (228)
T ss_pred eeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeecccc
Confidence 3688899999999999999999999999999998865211 12221 11
Q ss_pred ---------ccccc------cccHHHHHHHhcCCchhhhhccchhHHHH-HHHHHHHHhCCCCcEEEEeCCCCCCChhhH
Q 002722 690 ---------PCDRA------SISVRDCIFARVGAGDCQLRGVSTFMQEM-LETASILKGATDRSLIIIDELGRGTSTYDG 753 (888)
Q Consensus 690 ---------p~~~~------~~~~~d~i~~~~~~~d~~~~~~s~f~~e~-~~~~~il~~~~~~slvllDEp~~gtd~~~~ 753 (888)
|.+-. .......++.++|..+.+......+|++. ++++.+...+..|.+++-||||.++|...|
T Consensus 103 ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg 182 (228)
T COG4181 103 LTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATG 182 (228)
T ss_pred chhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHH
Confidence 21111 11224467899999999998888888655 455555556899999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhhccccccccccccEeEEEE
Q 002722 754 FGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHV 805 (888)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~~~~~~~~~~~~~v~~~~~ 805 (888)
..|+.-+.. +..+.|.+.+++|||+.++.-|++ ...+..+++
T Consensus 183 ~~iaDLlF~-lnre~G~TlVlVTHD~~LA~Rc~R---------~~r~~~G~l 224 (228)
T COG4181 183 DKIADLLFA-LNRERGTTLVLVTHDPQLAARCDR---------QLRLRSGRL 224 (228)
T ss_pred HHHHHHHHH-HhhhcCceEEEEeCCHHHHHhhhh---------eeeeeccee
Confidence 999655544 444579999999999999999998 666766665
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.4e-16 Score=183.24 Aligned_cols=141 Identities=13% Similarity=0.087 Sum_probs=103.8
Q ss_pred ccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh---------------------hcCccccccc------cccc
Q 002722 645 IPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA---------------------QVGSFVPCDR------ASIS 697 (888)
Q Consensus 645 v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a---------------------~~g~~vp~~~------~~~~ 697 (888)
+.++++|++.+|++++|+||||||||||||+++++.... ..-.|+|... ...+
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t 357 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAP 357 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCc
Confidence 467999999999999999999999999999998753110 0113455431 0011
Q ss_pred H------------------------HHHHHHhcCCc-hhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChh
Q 002722 698 V------------------------RDCIFARVGAG-DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTY 751 (888)
Q Consensus 698 ~------------------------~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~ 751 (888)
+ ++.++.++|.. +......+.+|+++++...+++ .+.+|+++||||||+|+|+.
T Consensus 358 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~ 437 (510)
T PRK15439 358 LAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVS 437 (510)
T ss_pred HHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChh
Confidence 1 22345566665 4556667788888877766655 47899999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 752 DGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 752 ~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
....+ ..++..+.+ .|.++|++||+++.. +++++
T Consensus 438 ~~~~l-~~~l~~l~~-~g~tiIivsHd~~~i~~~~d~ 472 (510)
T PRK15439 438 ARNDI-YQLIRSIAA-QNVAVLFISSDLEEIEQMADR 472 (510)
T ss_pred HHHHH-HHHHHHHHh-CCCEEEEECCCHHHHHHhCCE
Confidence 88888 667777776 589999999998766 56776
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.8e-16 Score=165.70 Aligned_cols=141 Identities=16% Similarity=0.143 Sum_probs=97.8
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh----hcC-----------------------cccccccc--
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA----QVG-----------------------SFVPCDRA-- 694 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a----~~g-----------------------~~vp~~~~-- 694 (888)
.+.++++|++.+|++++|+||||||||||||+++++.... .-| .|+|....
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (258)
T PRK14241 18 HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPF 97 (258)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccC
Confidence 4678999999999999999999999999999999865310 111 13332211
Q ss_pred -cccHHHH----------------------HHHhcCCc----hhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCC
Q 002722 695 -SISVRDC----------------------IFARVGAG----DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGR 746 (888)
Q Consensus 695 -~~~~~d~----------------------i~~~~~~~----d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~ 746 (888)
..++.+. ++..+|.. +........+|+++++...+.+ .+.+|+++|||||++
T Consensus 98 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 177 (258)
T PRK14241 98 PTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCS 177 (258)
T ss_pred CCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 1122221 22333431 2334445677777766655554 478999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 747 GTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 747 gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
|+|+.....+ ..++..+.+ ++++|++||+.+.. +++++
T Consensus 178 ~LD~~~~~~l-~~~l~~~~~--~~tviivsH~~~~~~~~~d~ 216 (258)
T PRK14241 178 ALDPISTLAI-EDLINELKQ--DYTIVIVTHNMQQAARVSDQ 216 (258)
T ss_pred cCCHHHHHHH-HHHHHHHhc--CCEEEEEecCHHHHHHhCCE
Confidence 9999888888 666666654 58999999998765 57776
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.8e-16 Score=147.71 Aligned_cols=140 Identities=16% Similarity=0.157 Sum_probs=109.0
Q ss_pred cccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh----------------hhcCcccccccccc---------
Q 002722 642 VNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----------------AQVGSFVPCDRASI--------- 696 (888)
Q Consensus 642 ~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~----------------a~~g~~vp~~~~~~--------- 696 (888)
..-|.+.+++...+|.++.|+|.+|||||||||+|..+-.+ ..-|..+|++...+
T Consensus 18 ~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~m 97 (256)
T COG4598 18 EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGM 97 (256)
T ss_pred cchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhH
Confidence 34567799999999999999999999999999998654321 22344444443211
Q ss_pred ---------------------------------cHHHHHHHhcCCchhhhhccchhHHHHHHHHHHHHh-CCCCcEEEEe
Q 002722 697 ---------------------------------SVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIID 742 (888)
Q Consensus 697 ---------------------------------~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~slvllD 742 (888)
.....++.++|..+........++++.++.+.|.++ +.+|.++|+|
T Consensus 98 VFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFD 177 (256)
T COG4598 98 VFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFD 177 (256)
T ss_pred hhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceEeec
Confidence 112245777888888888888889888888777765 7899999999
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHH
Q 002722 743 ELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTA 783 (888)
Q Consensus 743 Ep~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~ 783 (888)
|||+.+||.-.-.+ ..++..|++ .|.|.+++||.+.++.
T Consensus 178 EPTSALDPElVgEV-Lkv~~~LAe-EgrTMv~VTHEM~FAR 216 (256)
T COG4598 178 EPTSALDPELVGEV-LKVMQDLAE-EGRTMVVVTHEMGFAR 216 (256)
T ss_pred CCcccCCHHHHHHH-HHHHHHHHH-hCCeEEEEeeehhHHH
Confidence 99999999876666 678889998 6999999999998875
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.5e-16 Score=164.71 Aligned_cols=142 Identities=17% Similarity=0.090 Sum_probs=98.1
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHh--h-----h--------------------hcCccccccccc
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL--M-----A--------------------QVGSFVPCDRAS 695 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~--~-----a--------------------~~g~~vp~~~~~ 695 (888)
..+.++++|++.+|++++|+||||||||||+|+++++.. . + +.-.|+|.....
T Consensus 18 ~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 97 (251)
T PRK14244 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNP 97 (251)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccc
Confidence 356789999999999999999999999999999987642 0 0 001244443211
Q ss_pred c--cHHH-----------------------HHHHhcCCch----hhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCC
Q 002722 696 I--SVRD-----------------------CIFARVGAGD----CQLRGVSTFMQEMLETASILK-GATDRSLIIIDELG 745 (888)
Q Consensus 696 ~--~~~d-----------------------~i~~~~~~~d----~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~ 745 (888)
+ ++.+ .++..+|..+ .+......+|+++++...+.+ .+.+|+++|||||+
T Consensus 98 ~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt 177 (251)
T PRK14244 98 FPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPC 177 (251)
T ss_pred ccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 0 1111 2234444432 223344567766666655544 47899999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 746 RGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 746 ~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
+|+|+.....+ ..++..+.+ +.++|++||+.+.. +++++
T Consensus 178 ~~LD~~~~~~l-~~~l~~~~~--~~tiiiisH~~~~~~~~~d~ 217 (251)
T PRK14244 178 SALDPVATNVI-ENLIQELKK--NFTIIVVTHSMKQAKKVSDR 217 (251)
T ss_pred ccCCHHHHHHH-HHHHHHHhc--CCeEEEEeCCHHHHHhhcCE
Confidence 99999888877 566666643 79999999998765 57777
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.4e-16 Score=165.48 Aligned_cols=142 Identities=15% Similarity=0.108 Sum_probs=97.3
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh----hcC-----------------------cccccccc-
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA----QVG-----------------------SFVPCDRA- 694 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a----~~g-----------------------~~vp~~~~- 694 (888)
..+.++++|++.+|++++|+||||||||||+|+++++.... ..| .|+|+...
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (253)
T PRK14267 17 NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNP 96 (253)
T ss_pred eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCcc
Confidence 35778999999999999999999999999999998874321 011 23333221
Q ss_pred --cccHHHH-----------------------HHHhcCCc----hhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCC
Q 002722 695 --SISVRDC-----------------------IFARVGAG----DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDEL 744 (888)
Q Consensus 695 --~~~~~d~-----------------------i~~~~~~~----d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp 744 (888)
..++.+. ++..+|.. +........+|+++++...+.+ .+.+|+++|||||
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 176 (253)
T PRK14267 97 FPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEP 176 (253)
T ss_pred CCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 1122222 22223321 1233345567777666655554 5789999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 745 GRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 745 ~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
++|+|+.....+ ..++..+.+ ++++|++||+++.. .++++
T Consensus 177 ~~~LD~~~~~~l-~~~l~~~~~--~~tiii~sH~~~~~~~~~d~ 217 (253)
T PRK14267 177 TANIDPVGTAKI-EELLFELKK--EYTIVLVTHSPAQAARVSDY 217 (253)
T ss_pred CccCCHHHHHHH-HHHHHHHhh--CCEEEEEECCHHHHHhhCCE
Confidence 999999888887 566666654 58999999998764 56776
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.1e-16 Score=166.04 Aligned_cols=142 Identities=10% Similarity=0.026 Sum_probs=100.1
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHh-------------------hhhcCcccccccccc--cHH--
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL-------------------MAQVGSFVPCDRASI--SVR-- 699 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~-------------------~a~~g~~vp~~~~~~--~~~-- 699 (888)
..+.++++|++.+|++++|+||||||||||||+++++.. +.+.-.++|.+..-+ ++.
T Consensus 17 ~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~n 96 (275)
T cd03289 17 NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKN 96 (275)
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHHH
Confidence 357889999999999999999999999999999987642 011123455443211 111
Q ss_pred ------------HHHHHhcCCchhhhhcc-----------chhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHH
Q 002722 700 ------------DCIFARVGAGDCQLRGV-----------STFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFG 755 (888)
Q Consensus 700 ------------d~i~~~~~~~d~~~~~~-----------s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~ 755 (888)
...+..+|+.+.+.... +.+|+++++...+.+ .+.+|+++|||||++|+|+.....
T Consensus 97 l~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~ 176 (275)
T cd03289 97 LDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQV 176 (275)
T ss_pred hhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHH
Confidence 12344555554444322 238877777666555 478999999999999999988877
Q ss_pred HHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 756 LAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 756 i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
+ ..++..+. .++++|++||+++....+++
T Consensus 177 l-~~~l~~~~--~~~tii~isH~~~~i~~~dr 205 (275)
T cd03289 177 I-RKTLKQAF--ADCTVILSEHRIEAMLECQR 205 (275)
T ss_pred H-HHHHHHhc--CCCEEEEEECCHHHHHhCCE
Confidence 7 45555543 38999999999987776766
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.9e-16 Score=164.89 Aligned_cols=151 Identities=18% Similarity=0.139 Sum_probs=103.0
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh-h---hcC-----------------------ccccccccc-
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-A---QVG-----------------------SFVPCDRAS- 695 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~-a---~~g-----------------------~~vp~~~~~- 695 (888)
.+.++++|++.+|++++|+||||||||||||+++++... . ..| .|+|.....
T Consensus 26 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 105 (259)
T PRK14274 26 HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPF 105 (259)
T ss_pred eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCccc
Confidence 577899999999999999999999999999999886431 0 011 133332210
Q ss_pred -ccHHH----------------------HHHHhcCCc----hhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCC
Q 002722 696 -ISVRD----------------------CIFARVGAG----DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRG 747 (888)
Q Consensus 696 -~~~~d----------------------~i~~~~~~~----d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~g 747 (888)
..+.+ .++..++.. +.+......+|+++++...+.+ .+.+|+++|||||++|
T Consensus 106 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~ 185 (259)
T PRK14274 106 PQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSA 185 (259)
T ss_pred ccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 01111 122333432 2234455667777766655555 5789999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEE
Q 002722 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
+|+.....+ +.++..+.+ +.++|++||+.+.. +++++ +..+.++++.
T Consensus 186 LD~~~~~~l-~~~l~~~~~--~~tiiivtH~~~~~~~~~d~---------i~~l~~G~i~ 233 (259)
T PRK14274 186 LDPVSTRKI-EELILKLKE--KYTIVIVTHNMQQAARVSDQ---------TAFFYMGELV 233 (259)
T ss_pred CCHHHHHHH-HHHHHHHhc--CCEEEEEEcCHHHHHHhCCE---------EEEEECCEEE
Confidence 999888888 666666654 68999999998764 57776 5555555553
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.3e-16 Score=154.35 Aligned_cols=141 Identities=23% Similarity=0.219 Sum_probs=102.4
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHH----------------------hhhhcCccc----ccccccc
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI----------------------LMAQVGSFV----PCDRASI 696 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~----------------------~~a~~g~~v----p~~~~~~ 696 (888)
+-|.+++++++++|++++|.||||||||||.++|++.- -.|..|.|+ |++-.-+
T Consensus 17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV 96 (251)
T COG0396 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGV 96 (251)
T ss_pred hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCe
Confidence 47999999999999999999999999999999987531 235566664 3332222
Q ss_pred cHH------------------------HHHHHhcCCchhh-hhcc-chhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCC
Q 002722 697 SVR------------------------DCIFARVGAGDCQ-LRGV-STFMQEMLETASILKG-ATDRSLIIIDELGRGTS 749 (888)
Q Consensus 697 ~~~------------------------d~i~~~~~~~d~~-~~~~-s~f~~e~~~~~~il~~-~~~~slvllDEp~~gtd 749 (888)
... +..+..++..+.. .+.. -.||++-++...|++. +.+|+++|||||-||+|
T Consensus 97 ~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLD 176 (251)
T COG0396 97 TNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLD 176 (251)
T ss_pred eHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCcc
Confidence 221 1223344444322 2221 3577777777788775 67999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHh
Q 002722 750 TYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALA 785 (888)
Q Consensus 750 ~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~ 785 (888)
. |+..+....++.+.+ .|..+|++|||..+.++.
T Consensus 177 I-dalk~V~~~i~~lr~-~~~~~liITHy~rll~~i 210 (251)
T COG0396 177 I-DALKIVAEGINALRE-EGRGVLIITHYQRLLDYI 210 (251)
T ss_pred H-HHHHHHHHHHHHHhc-CCCeEEEEecHHHHHhhc
Confidence 9 555555777888887 699999999999998765
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.1e-16 Score=164.35 Aligned_cols=141 Identities=14% Similarity=0.144 Sum_probs=96.4
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh-------h--------------------hcCccccccccc-
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-------A--------------------QVGSFVPCDRAS- 695 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~-------a--------------------~~g~~vp~~~~~- 695 (888)
.+.++++|++.+|++++|+||||||||||||+++++... + +.-.|+|.....
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 96 (250)
T PRK14240 17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPF 96 (250)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccC
Confidence 467899999999999999999999999999999875321 0 001244443211
Q ss_pred -ccHHHHH----------------------HHhcCCc----hhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCC
Q 002722 696 -ISVRDCI----------------------FARVGAG----DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRG 747 (888)
Q Consensus 696 -~~~~d~i----------------------~~~~~~~----d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~g 747 (888)
.++.+.+ +.+++.. +.......++|+++++...+.+ .+.+|+++|||||++|
T Consensus 97 ~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~ 176 (250)
T PRK14240 97 PMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSA 176 (250)
T ss_pred cccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 1222222 1122221 1223345667777766655554 5789999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
+|+.....+ ..++..+.+ +.++|++||+.+.. +++++
T Consensus 177 LD~~~~~~l-~~~l~~~~~--~~tiii~sH~~~~~~~~~d~ 214 (250)
T PRK14240 177 LDPISTLKI-EELIQELKK--DYTIVIVTHNMQQASRISDK 214 (250)
T ss_pred CCHHHHHHH-HHHHHHHhc--CCeEEEEEeCHHHHHhhCCE
Confidence 999988888 556666653 78999999998754 56776
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.8e-16 Score=164.17 Aligned_cols=151 Identities=16% Similarity=0.106 Sum_probs=102.4
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh----hhcC-----------------------ccccccccc-
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----AQVG-----------------------SFVPCDRAS- 695 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~----a~~g-----------------------~~vp~~~~~- 695 (888)
.+.++++|++.+|++++|+||||||||||||+++++... ...| .|+|+....
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 97 (251)
T PRK14270 18 QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPF 97 (251)
T ss_pred eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcC
Confidence 467899999999999999999999999999999986421 0111 233333211
Q ss_pred -ccHHHH----------------------HHHhcCCc----hhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCC
Q 002722 696 -ISVRDC----------------------IFARVGAG----DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRG 747 (888)
Q Consensus 696 -~~~~d~----------------------i~~~~~~~----d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~g 747 (888)
.++.+. ++..++.. +........+|+++++...+.+ .+.+|+++|||||++|
T Consensus 98 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~ 177 (251)
T PRK14270 98 PMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSA 177 (251)
T ss_pred CCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 111221 22233321 2234455677777666655544 5789999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEE
Q 002722 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
+|+.....+ ..++..+.+ +.++|++||+.+.. +++++ +..+.++++.
T Consensus 178 LD~~~~~~l-~~~L~~~~~--~~tiiivsH~~~~~~~~~d~---------v~~l~~G~i~ 225 (251)
T PRK14270 178 LDPISTLKI-EDLMVELKK--EYTIVIVTHNMQQASRVSDY---------TAFFLMGDLI 225 (251)
T ss_pred CCHHHHHHH-HHHHHHHHh--CCeEEEEEcCHHHHHHhcCE---------EEEEECCeEE
Confidence 999888888 556666665 57899999998764 57776 5555555543
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.1e-16 Score=164.19 Aligned_cols=142 Identities=15% Similarity=0.080 Sum_probs=96.9
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHh--h-----h--------------------hcCccccccccc
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL--M-----A--------------------QVGSFVPCDRAS 695 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~--~-----a--------------------~~g~~vp~~~~~ 695 (888)
..+.++++|++.+|++++|+||||||||||+++++++.. . + +.-.|+|+...-
T Consensus 18 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 97 (252)
T PRK14239 18 KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNP 97 (252)
T ss_pred eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCcc
Confidence 357789999999999999999999999999999987521 1 0 011234433211
Q ss_pred --ccHHHHH----------------------HHhcCCc----hhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCC
Q 002722 696 --ISVRDCI----------------------FARVGAG----DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGR 746 (888)
Q Consensus 696 --~~~~d~i----------------------~~~~~~~----d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~ 746 (888)
.++.+.+ +.+++.. +........+|+++++...+++ .+.+|+++|||||++
T Consensus 98 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 177 (252)
T PRK14239 98 FPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTS 177 (252)
T ss_pred CcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 1222222 1222221 1223445567777666655554 578999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhH-HHHhhh
Q 002722 747 GTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHEL-TALAHE 787 (888)
Q Consensus 747 gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l-~~~~~~ 787 (888)
|+|+.....+ ..++..+.+ +.++|++||+++. .+++++
T Consensus 178 ~LD~~~~~~l-~~~l~~~~~--~~tii~~sH~~~~~~~~~d~ 216 (252)
T PRK14239 178 ALDPISAGKI-EETLLGLKD--DYTMLLVTRSMQQASRISDR 216 (252)
T ss_pred ccCHHHHHHH-HHHHHHHhh--CCeEEEEECCHHHHHHhCCE
Confidence 9999988888 566666654 5899999999865 467777
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.2e-16 Score=160.84 Aligned_cols=139 Identities=16% Similarity=0.129 Sum_probs=92.4
Q ss_pred ccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhcCcc-------cccc--c---ccccHHHHH----------
Q 002722 645 IPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSF-------VPCD--R---ASISVRDCI---------- 702 (888)
Q Consensus 645 v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~g~~-------vp~~--~---~~~~~~d~i---------- 702 (888)
+.++++|++.+|++++|+||||||||||+|+++++.... -|.. ++.. . ..+++.+.+
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~-sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~ 80 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPD-EGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLD 80 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC-CCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCC
Confidence 567999999999999999999999999999998864321 1211 1100 0 112222222
Q ss_pred --------HHhcCCchhhhhccchhHHHHHHHHH-HHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEE
Q 002722 703 --------FARVGAGDCQLRGVSTFMQEMLETAS-ILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTL 773 (888)
Q Consensus 703 --------~~~~~~~d~~~~~~s~f~~e~~~~~~-il~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l 773 (888)
...++..+......+.+|++|++... ++..+.+|+++|||||++++|+.....+...+.+.+. +.++|
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~---~~~ii 157 (213)
T PRK15177 81 GDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ---QKGLI 157 (213)
T ss_pred HHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh---CCcEE
Confidence 11122222233345567777766644 4445789999999999999999988887554545543 35689
Q ss_pred EEecChhHH-HHhhh
Q 002722 774 FATHFHELT-ALAHE 787 (888)
Q Consensus 774 ~~TH~~~l~-~~~~~ 787 (888)
++||+++.. +++++
T Consensus 158 ~vsH~~~~~~~~~d~ 172 (213)
T PRK15177 158 VLTHNPRLIKEHCHA 172 (213)
T ss_pred EEECCHHHHHHhcCe
Confidence 999998776 47776
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.3e-16 Score=184.35 Aligned_cols=153 Identities=16% Similarity=0.068 Sum_probs=108.8
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh-------h----------------------hcCcccccccc
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-------A----------------------QVGSFVPCDRA 694 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~-------a----------------------~~g~~vp~~~~ 694 (888)
.+.++++|++.+|++++|+||||||||||||+++++... + +.-.|+|+...
T Consensus 23 ~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~ 102 (529)
T PRK15134 23 TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPM 102 (529)
T ss_pred eeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCch
Confidence 577899999999999999999999999999999876532 0 00124444321
Q ss_pred --c---ccH----------------------HHHHHHhcCCch---hhhhccchhHHHHHHHHHHHHh-CCCCcEEEEeC
Q 002722 695 --S---ISV----------------------RDCIFARVGAGD---CQLRGVSTFMQEMLETASILKG-ATDRSLIIIDE 743 (888)
Q Consensus 695 --~---~~~----------------------~d~i~~~~~~~d---~~~~~~s~f~~e~~~~~~il~~-~~~~slvllDE 743 (888)
. ..+ ++.++..+|..+ ......+++|+++++...++++ +.+|+++||||
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDE 182 (529)
T PRK15134 103 VSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADE 182 (529)
T ss_pred hhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 0 000 112344556543 2355677888887777666554 78999999999
Q ss_pred CCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEE
Q 002722 744 LGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 744 p~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
||+|+|+.....+ ..++..+.++.|.++|++||+++.+ .++++ +..+.++++.
T Consensus 183 Pt~~LD~~~~~~l-~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dr---------i~~l~~G~i~ 236 (529)
T PRK15134 183 PTTALDVSVQAQI-LQLLRELQQELNMGLLFITHNLSIVRKLADR---------VAVMQNGRCV 236 (529)
T ss_pred CCCccCHHHHHHH-HHHHHHHHHhcCCeEEEEcCcHHHHHHhcCE---------EEEEECCEEE
Confidence 9999999988888 6677777653489999999998765 57777 4455555543
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.4e-16 Score=164.62 Aligned_cols=142 Identities=17% Similarity=0.138 Sum_probs=98.3
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhh--------------------------cCcccccccc--
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ--------------------------VGSFVPCDRA-- 694 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~--------------------------~g~~vp~~~~-- 694 (888)
..+.++++|++.+|++++|+|||||||||||++++++..... .-.|+|....
T Consensus 23 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~ 102 (257)
T PRK14246 23 KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPF 102 (257)
T ss_pred ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccC
Confidence 457789999999999999999999999999999987532110 0123333321
Q ss_pred -cccHHHH----------------------HHHhcCCc----hhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCC
Q 002722 695 -SISVRDC----------------------IFARVGAG----DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGR 746 (888)
Q Consensus 695 -~~~~~d~----------------------i~~~~~~~----d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~ 746 (888)
..++.+. ++.+++.. +........+|+++++...+.+ .+.+|+++|||||++
T Consensus 103 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~ 182 (257)
T PRK14246 103 PHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTS 182 (257)
T ss_pred CCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCc
Confidence 1122221 22334442 2233445667777666655554 578999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 747 GTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 747 gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
|+|+.....+ ..++..+.+ ++++|++||+.+.. .++++
T Consensus 183 ~LD~~~~~~l-~~~l~~~~~--~~tiilvsh~~~~~~~~~d~ 221 (257)
T PRK14246 183 MIDIVNSQAI-EKLITELKN--EIAIVIVSHNPQQVARVADY 221 (257)
T ss_pred cCCHHHHHHH-HHHHHHHhc--CcEEEEEECCHHHHHHhCCE
Confidence 9999888887 666666654 68999999998876 57776
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.6e-16 Score=161.56 Aligned_cols=134 Identities=24% Similarity=0.185 Sum_probs=94.2
Q ss_pred cCCCCeEEEEEecCCCChhHHHhhhhHHHhhh---------------hcCcccccccc-----cccH-------------
Q 002722 652 IRGKSWFQIITGPNMGGKSTFIRQVGVNILMA---------------QVGSFVPCDRA-----SISV------------- 698 (888)
Q Consensus 652 ~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a---------------~~g~~vp~~~~-----~~~~------------- 698 (888)
++.+|++++|+||||||||||+|+++++.... +.-.|+|.... ...+
T Consensus 2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~ 81 (223)
T TIGR03771 2 SADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIG 81 (223)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccc
Confidence 45789999999999999999999998753211 11134443321 0111
Q ss_pred ------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHH
Q 002722 699 ------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLV 765 (888)
Q Consensus 699 ------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~ 765 (888)
+..++..++..+........+|+++++...+.+ .+.+|+++|+|||++|+|+.....+ ..++..+.
T Consensus 82 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l-~~~l~~~~ 160 (223)
T TIGR03771 82 WLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELL-TELFIELA 160 (223)
T ss_pred cccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHHHHHHH
Confidence 122345556655555556678877777655554 5789999999999999999998888 55666666
Q ss_pred hcCCCeEEEEecChhHH-HHhhh
Q 002722 766 EEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 766 ~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
+ .|.++|++||+++.. .++++
T Consensus 161 ~-~~~tvii~sH~~~~~~~~~d~ 182 (223)
T TIGR03771 161 G-AGTAILMTTHDLAQAMATCDR 182 (223)
T ss_pred H-cCCEEEEEeCCHHHHHHhCCE
Confidence 5 589999999998754 56766
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.1e-16 Score=180.84 Aligned_cols=141 Identities=12% Similarity=0.129 Sum_probs=103.3
Q ss_pred ccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh---------------------hcCccccccc------cccc
Q 002722 645 IPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA---------------------QVGSFVPCDR------ASIS 697 (888)
Q Consensus 645 v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a---------------------~~g~~vp~~~------~~~~ 697 (888)
+.++++|++.+|++++|+||||||||||||+++++.... +.-.|+|+.. ..++
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~t 346 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMS 346 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCc
Confidence 578999999999999999999999999999998653110 1113455442 0011
Q ss_pred H---------------------------HHHHHHhcCCc-hhhhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCC
Q 002722 698 V---------------------------RDCIFARVGAG-DCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGT 748 (888)
Q Consensus 698 ~---------------------------~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~~-~~~~slvllDEp~~gt 748 (888)
+ ++.++.++|.. +.......++|+++++...+++. +.+|+++||||||+|+
T Consensus 347 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~L 426 (501)
T PRK10762 347 VKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGV 426 (501)
T ss_pred HHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCC
Confidence 1 22345556663 34555667888888777666554 7899999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 749 STYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 749 d~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
|+.....+ ..++..+.+ .|.++|++||+++.. +++++
T Consensus 427 D~~~~~~l-~~~l~~~~~-~g~tviivtHd~~~~~~~~d~ 464 (501)
T PRK10762 427 DVGAKKEI-YQLINQFKA-EGLSIILVSSEMPEVLGMSDR 464 (501)
T ss_pred CHhHHHHH-HHHHHHHHH-CCCEEEEEcCCHHHHHhhCCE
Confidence 99988888 667777776 589999999997765 56766
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-15 Score=164.98 Aligned_cols=153 Identities=13% Similarity=0.046 Sum_probs=101.9
Q ss_pred cEEEEcCcCceeeeccCcccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhcC--------ccccccccc-
Q 002722 625 DIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVG--------SFVPCDRAS- 695 (888)
Q Consensus 625 ~l~i~~~rhp~~~~~~~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~g--------~~vp~~~~~- 695 (888)
.|.+++.... ...+.++++|++.+|++++|+||||||||||+|+++++.... .| .|+|+...-
T Consensus 39 ~l~i~nls~~-------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~-~G~I~i~g~i~yv~q~~~l~ 110 (282)
T cd03291 39 NLFFSNLCLV-------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPS-EGKIKHSGRISFSSQFSWIM 110 (282)
T ss_pred eEEEEEEEEe-------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEEEEEeCccccc
Confidence 3777776442 135788999999999999999999999999999998864321 12 244544311
Q ss_pred -ccHHHH--------------HHHhcCCchhhh-----------hccchhHHHHHHHHHHH-HhCCCCcEEEEeCCCCCC
Q 002722 696 -ISVRDC--------------IFARVGAGDCQL-----------RGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGT 748 (888)
Q Consensus 696 -~~~~d~--------------i~~~~~~~d~~~-----------~~~s~f~~e~~~~~~il-~~~~~~slvllDEp~~gt 748 (888)
.++.+. .+..+++.+.+. ...+.+|+++++...+. ..+.+|+++|||||++|+
T Consensus 111 ~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gL 190 (282)
T cd03291 111 PGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYL 190 (282)
T ss_pred ccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccC
Confidence 122222 122223222111 12246776666654444 457899999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 749 STYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 749 d~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
|+.....+...+++.+.+ +.++|++||+.+....+++
T Consensus 191 D~~~~~~l~~~ll~~~~~--~~tIiiisH~~~~~~~~d~ 227 (282)
T cd03291 191 DVFTEKEIFESCVCKLMA--NKTRILVTSKMEHLKKADK 227 (282)
T ss_pred CHHHHHHHHHHHHHHhhC--CCEEEEEeCChHHHHhCCE
Confidence 998877775555555543 7899999999887766655
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-15 Score=163.70 Aligned_cols=142 Identities=15% Similarity=0.111 Sum_probs=95.8
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh----hcC-----------------------ccccccccc
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA----QVG-----------------------SFVPCDRAS 695 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a----~~g-----------------------~~vp~~~~~ 695 (888)
..+.++++|++.+|++++|+||||||||||+|+++++.-.. ..| .|+|++...
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 98 (253)
T PRK14261 19 KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNP 98 (253)
T ss_pred eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCcc
Confidence 35788999999999999999999999999999998753210 011 233333211
Q ss_pred c--cHHHH----------------------HHHhcCCc----hhhhhccchhHHHHHHHHHH-HHhCCCCcEEEEeCCCC
Q 002722 696 I--SVRDC----------------------IFARVGAG----DCQLRGVSTFMQEMLETASI-LKGATDRSLIIIDELGR 746 (888)
Q Consensus 696 ~--~~~d~----------------------i~~~~~~~----d~~~~~~s~f~~e~~~~~~i-l~~~~~~slvllDEp~~ 746 (888)
+ ++.+. ++.+++.. +.+......+|+++++...+ ...+.+|+++|||||++
T Consensus 99 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~ 178 (253)
T PRK14261 99 FPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCS 178 (253)
T ss_pred CcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 1 11111 12222221 12234445677666555444 44578999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 747 GTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 747 gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
|+|+.....+ ..++..+.+ +.++|++||+.+.. +++++
T Consensus 179 gLD~~~~~~l-~~~l~~~~~--~~tvii~sh~~~~~~~~~d~ 217 (253)
T PRK14261 179 ALDPIATAKI-EDLIEDLKK--EYTVIIVTHNMQQAARVSDY 217 (253)
T ss_pred cCCHHHHHHH-HHHHHHHhh--CceEEEEEcCHHHHHhhCCE
Confidence 9999988888 566666664 58999999998765 57776
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-15 Score=163.21 Aligned_cols=141 Identities=14% Similarity=0.137 Sum_probs=96.3
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHh--hh--hcC-----------------------ccccccccc-
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL--MA--QVG-----------------------SFVPCDRAS- 695 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~--~a--~~g-----------------------~~vp~~~~~- 695 (888)
.+.++++|++.+|++++|+||||||||||+|+++++.. .. +-| .|+|+....
T Consensus 19 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 98 (252)
T PRK14255 19 EALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPF 98 (252)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccC
Confidence 56789999999999999999999999999999988532 10 011 234433211
Q ss_pred -ccHHHHH----------------------HHhcCCc----hhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCC
Q 002722 696 -ISVRDCI----------------------FARVGAG----DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRG 747 (888)
Q Consensus 696 -~~~~d~i----------------------~~~~~~~----d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~g 747 (888)
.++.+.+ +.+++.. +........+|+++++...+.+ .+.+|+++|||||++|
T Consensus 99 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~ 178 (252)
T PRK14255 99 PFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSA 178 (252)
T ss_pred CCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 1222221 1122221 1223444567777766655554 4789999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
+|+.....+ ..++..+.+ +.++|++||+.+.. +++++
T Consensus 179 LD~~~~~~l-~~~l~~~~~--~~tii~vsH~~~~~~~~~d~ 216 (252)
T PRK14255 179 LDPISSTQI-ENMLLELRD--QYTIILVTHSMHQASRISDK 216 (252)
T ss_pred CCHHHHHHH-HHHHHHHHh--CCEEEEEECCHHHHHHhCCE
Confidence 999988888 566666665 57999999998765 56776
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.5e-16 Score=182.62 Aligned_cols=143 Identities=17% Similarity=0.188 Sum_probs=102.7
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh-----------------------hhcCcccccccc---c-
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-----------------------AQVGSFVPCDRA---S- 695 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~-----------------------a~~g~~vp~~~~---~- 695 (888)
..+.++++|++.+|++++|+||||||||||||+++++... .++ .|+|++.. .
T Consensus 273 ~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i-~~v~q~~~~~~~~ 351 (490)
T PRK10938 273 RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHI-GYVSSSLHLDYRV 351 (490)
T ss_pred eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhc-eEECHHHHhhccc
Confidence 3578899999999999999999999999999999885321 011 12332110 0
Q ss_pred -c-------------------------cHHHHHHHhcCCch-hhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCC
Q 002722 696 -I-------------------------SVRDCIFARVGAGD-CQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRG 747 (888)
Q Consensus 696 -~-------------------------~~~d~i~~~~~~~d-~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~g 747 (888)
. ..+..++..+|..+ ......+++|+++++...+++ .+.+|+++||||||+|
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~g 431 (490)
T PRK10938 352 STSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQG 431 (490)
T ss_pred CCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCcccc
Confidence 0 01234455667665 556667888888877766555 4789999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHH--Hhhh
Q 002722 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTA--LAHE 787 (888)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~--~~~~ 787 (888)
+|+.....+ ..++..++++.+.++|++||+.+... ++++
T Consensus 432 LD~~~~~~l-~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~ 472 (490)
T PRK10938 432 LDPLNRQLV-RRFVDVLISEGETQLLFVSHHAEDAPACITHR 472 (490)
T ss_pred CCHHHHHHH-HHHHHHHHhcCCcEEEEEecchhhhhhhhhee
Confidence 999998888 66666776633456999999988764 3555
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-15 Score=162.47 Aligned_cols=142 Identities=15% Similarity=0.128 Sum_probs=96.6
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh----hcC----------------------ccccccccc-
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA----QVG----------------------SFVPCDRAS- 695 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a----~~g----------------------~~vp~~~~~- 695 (888)
..+.++++|++.+|++++|+||||||||||+|+++++.-.. ..| .|+|.+...
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~ 95 (249)
T PRK14253 16 NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPF 95 (249)
T ss_pred eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcC
Confidence 35788999999999999999999999999999998764320 011 234433211
Q ss_pred -ccHHHHH----------------------HHhcCCc----hhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCC
Q 002722 696 -ISVRDCI----------------------FARVGAG----DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRG 747 (888)
Q Consensus 696 -~~~~d~i----------------------~~~~~~~----d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~g 747 (888)
.++.+.+ +..++.. +.+......+|+++++...+.+ .+.+|+++|||||++|
T Consensus 96 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~ 175 (249)
T PRK14253 96 PMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSA 175 (249)
T ss_pred cccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 1222222 1112221 1223344567766666555544 4789999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
+|+.....+ ..+++.+.+ +.++|++||+.+.. .++++
T Consensus 176 LD~~~~~~l-~~~l~~~~~--~~tii~~sh~~~~~~~~~d~ 213 (249)
T PRK14253 176 LDPIATHKI-EELMEELKK--NYTIVIVTHSMQQARRISDR 213 (249)
T ss_pred CCHHHHHHH-HHHHHHHhc--CCeEEEEecCHHHHHHhCCE
Confidence 999887777 667777764 58999999998764 56776
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.3e-16 Score=180.35 Aligned_cols=142 Identities=20% Similarity=0.151 Sum_probs=103.4
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh---------------------hcCcccccccc---cccH-
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA---------------------QVGSFVPCDRA---SISV- 698 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a---------------------~~g~~vp~~~~---~~~~- 698 (888)
.+.++++|++.+|++++|+||||||||||+|+++++.... +.-.|+|+... ..++
T Consensus 12 ~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 91 (491)
T PRK10982 12 KALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVM 91 (491)
T ss_pred EeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHH
Confidence 4677999999999999999999999999999998753210 11124443321 1111
Q ss_pred -----------------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHH
Q 002722 699 -----------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGF 754 (888)
Q Consensus 699 -----------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~ 754 (888)
+..++.++|.........+++|+++++...+++ .+.+|+++||||||+|+|+....
T Consensus 92 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~ 171 (491)
T PRK10982 92 DNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVN 171 (491)
T ss_pred HHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Confidence 123445556555555566788888777766555 47899999999999999999888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 755 GLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
.+ ..++..+.+ .|.++|++||+.+.. .++++
T Consensus 172 ~l-~~~l~~l~~-~g~tvii~tH~~~~~~~~~d~ 203 (491)
T PRK10982 172 HL-FTIIRKLKE-RGCGIVYISHKMEEIFQLCDE 203 (491)
T ss_pred HH-HHHHHHHHh-CCCEEEEEecCHHHHHHhCCE
Confidence 88 667777766 589999999998765 56776
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-15 Score=165.06 Aligned_cols=142 Identities=18% Similarity=0.149 Sum_probs=99.2
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh----hhcC-----------------------ccccccccc
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----AQVG-----------------------SFVPCDRAS 695 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~----a~~g-----------------------~~vp~~~~~ 695 (888)
..+.++++|++.+|++++|+||||||||||||+++++... ..-| .|+|+....
T Consensus 52 ~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l 131 (285)
T PRK14254 52 EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNP 131 (285)
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCcc
Confidence 4688999999999999999999999999999999876421 0111 233433211
Q ss_pred --ccHHH--------------------HHHHhcCCc----hhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCC
Q 002722 696 --ISVRD--------------------CIFARVGAG----DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGT 748 (888)
Q Consensus 696 --~~~~d--------------------~i~~~~~~~----d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gt 748 (888)
..+.+ .++..+|.. +.+....+.+|+++++...+++ .+.+|+++|||||++|+
T Consensus 132 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~L 211 (285)
T PRK14254 132 FPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASAL 211 (285)
T ss_pred CcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 01111 223344442 2344556778877766655554 47899999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 749 STYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 749 d~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
|+.....+ ..+++.+.+ +.++|++||+.+.. .++++
T Consensus 212 D~~~~~~l-~~~L~~~~~--~~tiii~tH~~~~i~~~~dr 248 (285)
T PRK14254 212 DPVATSKI-EDLIEELAE--EYTVVIVTHNMQQAARISDK 248 (285)
T ss_pred CHHHHHHH-HHHHHHHhc--CCEEEEEeCCHHHHHhhcCE
Confidence 99888877 666667765 47899999998775 45665
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.6e-16 Score=181.80 Aligned_cols=154 Identities=19% Similarity=0.152 Sum_probs=110.6
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHh------h----------------hhcCcccccccc-----c
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL------M----------------AQVGSFVPCDRA-----S 695 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~------~----------------a~~g~~vp~~~~-----~ 695 (888)
..+.++++|++.+|++++|+||||||||||+|+++++.. + .+.-.|+|+... .
T Consensus 299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~ 378 (529)
T PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPR 378 (529)
T ss_pred ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCc
Confidence 357889999999999999999999999999999987531 0 010124444320 0
Q ss_pred ccH-----------------------HHHHHHhcCCc-hhhhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCh
Q 002722 696 ISV-----------------------RDCIFARVGAG-DCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTST 750 (888)
Q Consensus 696 ~~~-----------------------~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~~-~~~~slvllDEp~~gtd~ 750 (888)
..+ +..++.++|.. +......+++|+++++...+++. +.+|+++||||||+|+|+
T Consensus 379 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~ 458 (529)
T PRK15134 379 LNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDK 458 (529)
T ss_pred ccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCH
Confidence 111 12345556665 34566678888888777666654 789999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEE
Q 002722 751 YDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 751 ~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
.....+ ..++..++++.|.++|++||+.+.+ .++++ +..+.++++.
T Consensus 459 ~~~~~l-~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~---------i~~l~~G~i~ 505 (529)
T PRK15134 459 TVQAQI-LALLKSLQQKHQLAYLFISHDLHVVRALCHQ---------VIVLRQGEVV 505 (529)
T ss_pred HHHHHH-HHHHHHHHHhhCCEEEEEeCCHHHHHHhcCe---------EEEEECCEEE
Confidence 988888 6666667653489999999998765 57777 5556555543
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.9e-16 Score=160.95 Aligned_cols=143 Identities=9% Similarity=0.005 Sum_probs=97.7
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh------------------------hcCcccccccc--ccc
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA------------------------QVGSFVPCDRA--SIS 697 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a------------------------~~g~~vp~~~~--~~~ 697 (888)
.+.++++|++.+|++++|+|||||||||||++++++.... +.-.|+|.... ..+
T Consensus 15 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t 94 (218)
T cd03290 15 ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNAT 94 (218)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCcccccc
Confidence 4677899999999999999999999999999998763110 11123343321 111
Q ss_pred HHH--------------HHHHhcCCchhh-----------hhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChh
Q 002722 698 VRD--------------CIFARVGAGDCQ-----------LRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTY 751 (888)
Q Consensus 698 ~~d--------------~i~~~~~~~d~~-----------~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~ 751 (888)
+.+ .+...++..+.+ ......+|+++++...+.+ .+.+|+++|||||++|+|+.
T Consensus 95 ~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~ 174 (218)
T cd03290 95 VEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIH 174 (218)
T ss_pred HHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHH
Confidence 222 222333332211 1234567777766655554 47899999999999999999
Q ss_pred hHHHHHHH-HHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 752 DGFGLAWA-ICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 752 ~~~~i~~~-il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
....+... +++.+.+ .|.++|++||+.+....+++
T Consensus 175 ~~~~l~~~~ll~~~~~-~~~tii~~sH~~~~~~~~d~ 210 (218)
T cd03290 175 LSDHLMQEGILKFLQD-DKRTLVLVTHKLQYLPHADW 210 (218)
T ss_pred HHHHHHHHHHHHHHhc-CCCEEEEEeCChHHHhhCCE
Confidence 88888543 7777765 58999999999887665554
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=8e-16 Score=181.36 Aligned_cols=140 Identities=11% Similarity=0.057 Sum_probs=104.6
Q ss_pred ccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh----------------------hhcCccccccc------ccc
Q 002722 645 IPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----------------------AQVGSFVPCDR------ASI 696 (888)
Q Consensus 645 v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~----------------------a~~g~~vp~~~------~~~ 696 (888)
+.++++|++.+|++++|+||||||||||||+++++... ..+ .|+|+.. ..+
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i-~~v~q~~~~~~~~~~~ 356 (510)
T PRK09700 278 KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGM-AYITESRRDNGFFPNF 356 (510)
T ss_pred cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCc-EEccCccccCCCcCCC
Confidence 78899999999999999999999999999999865311 012 3455431 001
Q ss_pred cH------------------------------HHHHHHhcCCc-hhhhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCC
Q 002722 697 SV------------------------------RDCIFARVGAG-DCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDEL 744 (888)
Q Consensus 697 ~~------------------------------~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~~-~~~~slvllDEp 744 (888)
++ ++.++.++|.. +.......++|+++++...+++. +.+|.++|||||
T Consensus 357 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEP 436 (510)
T PRK09700 357 SIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEP 436 (510)
T ss_pred cHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCC
Confidence 11 23455666765 55666678888888777666554 789999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 745 GRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 745 ~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
|+|+|+.....+ ..+++.+.+ .|.++|++||+.+.. .++++
T Consensus 437 t~~LD~~~~~~l-~~~l~~l~~-~g~tvi~vsHd~~~~~~~~d~ 478 (510)
T PRK09700 437 TRGIDVGAKAEI-YKVMRQLAD-DGKVILMVSSELPEIITVCDR 478 (510)
T ss_pred CCCcCHHHHHHH-HHHHHHHHH-CCCEEEEEcCCHHHHHhhCCE
Confidence 999999988888 667777766 589999999998765 56766
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.7e-15 Score=166.28 Aligned_cols=166 Identities=16% Similarity=0.104 Sum_probs=108.7
Q ss_pred CCCCCccCCCCCccEEEEcCcCceeeeccCcccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh----hhc--
Q 002722 612 PYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----AQV-- 685 (888)
Q Consensus 612 ~~~rP~~~~~~~~~l~i~~~rhp~~~~~~~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~----a~~-- 685 (888)
.|.-|.+.... .|.+.+...-+ +...+.++++|++.+|++++|+|||||||||||++++++... ..-
T Consensus 34 ~~~~~~~~~~~--~l~i~nl~~~~-----~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~ 106 (305)
T PRK14264 34 EWTDYEFDGDA--KLSVEDLDVYY-----GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGS 106 (305)
T ss_pred cccccccCCCc--eEEEEEEEEEe-----CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceE
Confidence 46666665432 35655543221 123578899999999999999999999999999999886421 011
Q ss_pred ---------------------Cccccccccc--ccHHHHH----------------------------------HHhcCC
Q 002722 686 ---------------------GSFVPCDRAS--ISVRDCI----------------------------------FARVGA 708 (888)
Q Consensus 686 ---------------------g~~vp~~~~~--~~~~d~i----------------------------------~~~~~~ 708 (888)
..|+|+...- .++.+.+ +..++.
T Consensus 107 I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 186 (305)
T PRK14264 107 VELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAAL 186 (305)
T ss_pred EEECCEEcccccccHHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCC
Confidence 1244443210 1122221 222222
Q ss_pred c----hhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-
Q 002722 709 G----DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT- 782 (888)
Q Consensus 709 ~----d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~- 782 (888)
. +........+|+++++...+.+ .+.+|+++|||||++|+|+.....+ ..++..+.+ +.++|++||+.+..
T Consensus 187 ~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l-~~~L~~~~~--~~tiiivtH~~~~i~ 263 (305)
T PRK14264 187 WDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKI-EDLIEELAE--EYTVVVVTHNMQQAA 263 (305)
T ss_pred chhhhHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHHHHHHhc--CCEEEEEEcCHHHHH
Confidence 1 1223445667777766655554 4789999999999999999888887 666667765 47899999998775
Q ss_pred HHhhh
Q 002722 783 ALAHE 787 (888)
Q Consensus 783 ~~~~~ 787 (888)
+++++
T Consensus 264 ~~~d~ 268 (305)
T PRK14264 264 RISDQ 268 (305)
T ss_pred HhcCE
Confidence 56665
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=7e-16 Score=181.35 Aligned_cols=141 Identities=18% Similarity=0.130 Sum_probs=103.4
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh----------------------hhcCcccccccc---cccH
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----------------------AQVGSFVPCDRA---SISV 698 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~----------------------a~~g~~vp~~~~---~~~~ 698 (888)
.+.++++|++.+|++++|+||||||||||||+++++..+ .++ .|+|+... .+++
T Consensus 18 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i-~~v~q~~~~~~~~tv 96 (501)
T PRK11288 18 KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV-AIIYQELHLVPEMTV 96 (501)
T ss_pred EEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE-EEEEechhccCCCCH
Confidence 477899999999999999999999999999999875321 012 24443321 1111
Q ss_pred ------------------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhH
Q 002722 699 ------------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDG 753 (888)
Q Consensus 699 ------------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~ 753 (888)
+..++.++|..+......+++|+++++...+++ .+.+|+++||||||+|+|+...
T Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~ 176 (501)
T PRK11288 97 AENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREI 176 (501)
T ss_pred HHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHH
Confidence 123445556555455566788888777766555 4789999999999999999988
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 754 FGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
..+ ..++..+.+ .|.++|++||+.+.. .++++
T Consensus 177 ~~l-~~~l~~~~~-~g~tiiiitHd~~~~~~~~d~ 209 (501)
T PRK11288 177 EQL-FRVIRELRA-EGRVILYVSHRMEEIFALCDA 209 (501)
T ss_pred HHH-HHHHHHHHh-CCCEEEEEeCCHHHHHHhCCE
Confidence 888 666677766 589999999998765 56776
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.6e-16 Score=181.19 Aligned_cols=143 Identities=15% Similarity=0.082 Sum_probs=103.2
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh-hc----------------------Ccccccccc---cc
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA-QV----------------------GSFVPCDRA---SI 696 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a-~~----------------------g~~vp~~~~---~~ 696 (888)
..+.++++|++.+|++++|+||||||||||||+++++.... .- -.|+|+... .+
T Consensus 14 ~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 93 (500)
T TIGR02633 14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPEL 93 (500)
T ss_pred eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCC
Confidence 35778999999999999999999999999999998865320 01 124443321 11
Q ss_pred cHH-------------------------HHHHHhcCCchhh-hhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCC
Q 002722 697 SVR-------------------------DCIFARVGAGDCQ-LRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTS 749 (888)
Q Consensus 697 ~~~-------------------------d~i~~~~~~~d~~-~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd 749 (888)
++. ..++.++|..+.. ....+++|+++++...+++ .+.+|+++||||||+|+|
T Consensus 94 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD 173 (500)
T TIGR02633 94 SVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLT 173 (500)
T ss_pred cHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Confidence 111 2234455554332 2446788888877766665 478999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 750 TYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 750 ~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
+.....+ ..++..+.+ .|.++|++||+.+.. .++++
T Consensus 174 ~~~~~~l-~~~l~~l~~-~g~tviiitHd~~~~~~~~d~ 210 (500)
T TIGR02633 174 EKETEIL-LDIIRDLKA-HGVACVYISHKLNEVKAVCDT 210 (500)
T ss_pred HHHHHHH-HHHHHHHHh-CCCEEEEEeCcHHHHHHhCCE
Confidence 9988888 667777776 589999999997765 56776
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.64 E-value=7e-16 Score=181.49 Aligned_cols=141 Identities=13% Similarity=0.166 Sum_probs=104.7
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh-----------------------hcCcccccccc------
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA-----------------------QVGSFVPCDRA------ 694 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a-----------------------~~g~~vp~~~~------ 694 (888)
.+.++++|++.+|++++|+||||||||||||+++++..+. ++ .|+|++..
T Consensus 274 ~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i-~~v~q~~~~~~l~~ 352 (500)
T TIGR02633 274 KRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGI-AMVPEDRKRHGIVP 352 (500)
T ss_pred cccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCC-EEcCcchhhCCcCC
Confidence 5788999999999999999999999999999998764310 11 23333310
Q ss_pred ccc--------------------------HHHHHHHhcCCch-hhhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCC
Q 002722 695 SIS--------------------------VRDCIFARVGAGD-CQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGR 746 (888)
Q Consensus 695 ~~~--------------------------~~d~i~~~~~~~d-~~~~~~s~f~~e~~~~~~il~~-~~~~slvllDEp~~ 746 (888)
.++ .+..++.+++..+ .......++|+++++...+++. +.+|+++||||||+
T Consensus 353 ~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~ 432 (500)
T TIGR02633 353 ILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTR 432 (500)
T ss_pred CCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCC
Confidence 000 1234556666643 4566677888888777666654 67999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 747 GTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 747 gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
|+|+.....+ ..++..+.+ .|.++|++||+++.. +++++
T Consensus 433 ~LD~~~~~~l-~~~l~~l~~-~g~tviivsHd~~~~~~~~d~ 472 (500)
T TIGR02633 433 GVDVGAKYEI-YKLINQLAQ-EGVAIIVVSSELAEVLGLSDR 472 (500)
T ss_pred CcCHhHHHHH-HHHHHHHHh-CCCEEEEECCCHHHHHHhCCE
Confidence 9999888887 667778876 589999999998765 57777
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=99.64 E-value=8e-16 Score=198.78 Aligned_cols=155 Identities=14% Similarity=0.075 Sum_probs=118.1
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh--------------------hhcCccccccccc---ccH-
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRAS---ISV- 698 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~--------------------a~~g~~vp~~~~~---~~~- 698 (888)
..+.++++|++.+|++++|+|||||||||++|+++++... .++| |+|+..+- ++.
T Consensus 1952 ~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IG-y~pQ~~~L~~~LTv~ 2030 (2272)
T TIGR01257 1952 SPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMG-YCPQFDAIDDLLTGR 2030 (2272)
T ss_pred ceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEE-EEeccccCCCCCCHH
Confidence 4688999999999999999999999999999999875321 1232 45544321 111
Q ss_pred --------------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHH
Q 002722 699 --------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLA 757 (888)
Q Consensus 699 --------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~ 757 (888)
++.++.++|..+...+..+++|++++|...++. .+.+|+++|||||++|+||.....+
T Consensus 2031 E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l- 2109 (2272)
T TIGR01257 2031 EHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRML- 2109 (2272)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHH-
Confidence 223455667766666677889988887755554 5789999999999999999988888
Q ss_pred HHHHHHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEEEEE
Q 002722 758 WAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSAHI 809 (888)
Q Consensus 758 ~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~~~~ 809 (888)
+.+++.+.+ .|+++|++||+++.+ .+|++ +.-+.++++.+..
T Consensus 2110 ~~lL~~l~~-~g~TIILtTH~mee~e~lcDr---------V~IL~~G~i~~~G 2152 (2272)
T TIGR01257 2110 WNTIVSIIR-EGRAVVLTSHSMEECEALCTR---------LAIMVKGAFQCLG 2152 (2272)
T ss_pred HHHHHHHHh-CCCEEEEEeCCHHHHHHhCCE---------EEEEECCEEEEEC
Confidence 888888876 589999999998776 47887 6667778776653
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.9e-15 Score=163.57 Aligned_cols=142 Identities=13% Similarity=0.112 Sum_probs=97.9
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh----hc----------------------Cccccccccc-
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA----QV----------------------GSFVPCDRAS- 695 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a----~~----------------------g~~vp~~~~~- 695 (888)
..+.++++|++.+|++++|+||||||||||+++++++.... .. ..|+|....-
T Consensus 34 ~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~ 113 (276)
T PRK14271 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPF 113 (276)
T ss_pred EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccC
Confidence 46788999999999999999999999999999998764310 01 1244433211
Q ss_pred -ccHHHH----------------------HHHhcCCch----hhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCC
Q 002722 696 -ISVRDC----------------------IFARVGAGD----CQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRG 747 (888)
Q Consensus 696 -~~~~d~----------------------i~~~~~~~d----~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~g 747 (888)
.++.+. ++..++... .+......+|+++++...+.+ .+.+|+++|||||++|
T Consensus 114 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~ 193 (276)
T PRK14271 114 PMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSA 193 (276)
T ss_pred CccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 112221 223333321 233445567776666555544 4789999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
+|+.....+ ..++..+.+ ++++|++||+.+.. +++++
T Consensus 194 LD~~~~~~l-~~~L~~~~~--~~tiiivsH~~~~~~~~~dr 231 (276)
T PRK14271 194 LDPTTTEKI-EEFIRSLAD--RLTVIIVTHNLAQAARISDR 231 (276)
T ss_pred CCHHHHHHH-HHHHHHHhc--CCEEEEEeCCHHHHHHhCCE
Confidence 999888887 556666664 48999999998764 57776
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-15 Score=163.73 Aligned_cols=142 Identities=13% Similarity=0.054 Sum_probs=96.7
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh----hhc-----------------------Cccccccccc
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----AQV-----------------------GSFVPCDRAS 695 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~----a~~-----------------------g~~vp~~~~~ 695 (888)
..+.++++|++.+|++++|+||||||||||||+++++... ... -.|+|+...-
T Consensus 26 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l 105 (269)
T PRK14259 26 FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNP 105 (269)
T ss_pred EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCcc
Confidence 3578899999999999999999999999999999886321 011 1234433211
Q ss_pred c--cHHHH--------------------HHHhcCCc----hhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCC
Q 002722 696 I--SVRDC--------------------IFARVGAG----DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGT 748 (888)
Q Consensus 696 ~--~~~d~--------------------i~~~~~~~----d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gt 748 (888)
+ ++.+. ++..++.. +.+......+|+++++...+++ .+.+|+++|||||++|+
T Consensus 106 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gL 185 (269)
T PRK14259 106 FPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSAL 185 (269)
T ss_pred chhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccC
Confidence 1 11111 12222221 1223344567777766655554 57899999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 749 STYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 749 d~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
|+.....+ +.+++.+.+ +.++|++||+.+.. .++++
T Consensus 186 D~~~~~~l-~~~l~~~~~--~~tiiivtH~~~~~~~~~d~ 222 (269)
T PRK14259 186 DPISTLKI-EETMHELKK--NFTIVIVTHNMQQAVRVSDM 222 (269)
T ss_pred CHHHHHHH-HHHHHHHhc--CCEEEEEeCCHHHHHHhcCE
Confidence 99888888 666666654 68999999998655 56766
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-15 Score=161.62 Aligned_cols=152 Identities=14% Similarity=0.106 Sum_probs=101.3
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh----hcC-----------------------cccccccc-
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA----QVG-----------------------SFVPCDRA- 694 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a----~~g-----------------------~~vp~~~~- 694 (888)
..+.++++|++.+|++++|+||||+|||||+|+++++.... .-| .|+|+...
T Consensus 17 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14272 17 KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNP 96 (252)
T ss_pred EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCcc
Confidence 35778999999999999999999999999999999864211 011 23333321
Q ss_pred --cccHHHHHH----------------------HhcCCc----hhhhhccchhHHHHHHHHHHH-HhCCCCcEEEEeCCC
Q 002722 695 --SISVRDCIF----------------------ARVGAG----DCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELG 745 (888)
Q Consensus 695 --~~~~~d~i~----------------------~~~~~~----d~~~~~~s~f~~e~~~~~~il-~~~~~~slvllDEp~ 745 (888)
..++.+.+. ..++.. +......+.+|+++++...+. ..+.+|+++|||||+
T Consensus 97 ~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~ 176 (252)
T PRK14272 97 FPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPT 176 (252)
T ss_pred CcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 122233221 111111 112333456776666654444 457899999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEE
Q 002722 746 RGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 746 ~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
+|+|+.....+ ..+++.+.+ +.++|++||+.+.. +++++ +..+.++++.
T Consensus 177 ~~LD~~~~~~l-~~~l~~~~~--~~tiii~sH~~~~~~~~~d~---------i~~l~~G~i~ 226 (252)
T PRK14272 177 SALDPASTARI-EDLMTDLKK--VTTIIIVTHNMHQAARVSDT---------TSFFLVGDLV 226 (252)
T ss_pred ccCCHHHHHHH-HHHHHHHhc--CCeEEEEeCCHHHHHHhCCE---------EEEEECCEEE
Confidence 99999888877 556666654 68999999998765 46776 5455555543
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.9e-15 Score=163.46 Aligned_cols=142 Identities=18% Similarity=0.121 Sum_probs=97.0
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh----hcC-----------------------ccccccccc
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA----QVG-----------------------SFVPCDRAS 695 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a----~~g-----------------------~~vp~~~~~ 695 (888)
..+.++++|++.+|++++|+||||||||||+++++++.-.. ..| .|+|....-
T Consensus 33 ~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l 112 (274)
T PRK14265 33 FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNP 112 (274)
T ss_pred eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCcc
Confidence 35788999999999999999999999999999998763210 011 244443211
Q ss_pred c--cHHHHH--------------------HHhcCCc----hhhhhccchhHHHHHHHHHHH-HhCCCCcEEEEeCCCCCC
Q 002722 696 I--SVRDCI--------------------FARVGAG----DCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGT 748 (888)
Q Consensus 696 ~--~~~d~i--------------------~~~~~~~----d~~~~~~s~f~~e~~~~~~il-~~~~~~slvllDEp~~gt 748 (888)
+ .+.+.+ +..++.. +......+.+|+++++...++ ..+.+|+++|||||++|+
T Consensus 113 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~L 192 (274)
T PRK14265 113 FPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSAL 192 (274)
T ss_pred ccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccC
Confidence 1 222221 2222321 223344566776666655544 457899999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 749 STYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 749 d~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
|+.....+ ..++..+.+ ++++|++||+.+.. .++++
T Consensus 193 D~~~~~~l-~~~L~~~~~--~~tiii~sH~~~~~~~~~d~ 229 (274)
T PRK14265 193 DPISTRQV-EELCLELKE--QYTIIMVTHNMQQASRVADW 229 (274)
T ss_pred CHHHHHHH-HHHHHHHhc--CCEEEEEeCCHHHHHHhCCE
Confidence 99888888 556666654 68999999998665 57776
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.2e-15 Score=147.40 Aligned_cols=156 Identities=17% Similarity=0.136 Sum_probs=108.4
Q ss_pred cccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHH--------------------hhhhcCcc-------------
Q 002722 642 VNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI--------------------LMAQVGSF------------- 688 (888)
Q Consensus 642 ~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~--------------------~~a~~g~~------------- 688 (888)
++-+.++++|+..+|++.+|+||||||||||||.+.+-. -||+.-..
T Consensus 13 Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv 92 (259)
T COG4559 13 GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTV 92 (259)
T ss_pred cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEH
Confidence 356788999999999999999999999999999986421 11111111
Q ss_pred --------ccccccc-----ccHHHHHHHhcCCchhhhhccchhHHHHHHH---HHHHHhCC----CCcEEEEeCCCCCC
Q 002722 689 --------VPCDRAS-----ISVRDCIFARVGAGDCQLRGVSTFMQEMLET---ASILKGAT----DRSLIIIDELGRGT 748 (888)
Q Consensus 689 --------vp~~~~~-----~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~---~~il~~~~----~~slvllDEp~~gt 748 (888)
+|..... -.+..+.+.+.+...-..+...++|++.++. +..+.... .+..++|||||+.+
T Consensus 93 ~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaL 172 (259)
T COG4559 93 QEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSAL 172 (259)
T ss_pred HHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCcccc
Confidence 1221111 1224455666665555555556666554443 44444432 44599999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHH-HhhhccccccccccccEeEEEEEEE
Q 002722 749 STYDGFGLAWAICEHLVEEIRAPTLFATHFHELTA-LAHENANEFNTKQMVGVANYHVSAH 808 (888)
Q Consensus 749 d~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~-~~~~~~~~~~~~~~~~v~~~~~~~~ 808 (888)
|......+ ..+.+.++. .|+.|+.+-||+.++. ++|+ +.-+..+++.+.
T Consensus 173 Di~HQ~~t-l~laR~la~-~g~~V~~VLHDLNLAA~YaDr---------ivll~~Grv~a~ 222 (259)
T COG4559 173 DIAHQHHT-LRLARQLAR-EGGAVLAVLHDLNLAAQYADR---------IVLLHQGRVIAS 222 (259)
T ss_pred chHHHHHH-HHHHHHHHh-cCCcEEEEEccchHHHHhhhe---------eeeeeCCeEeec
Confidence 99988888 667788887 5899999999999984 8888 666777777664
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-15 Score=157.18 Aligned_cols=137 Identities=12% Similarity=0.009 Sum_probs=94.2
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh--------------------hcCccccccccc--ccHHHH
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA--------------------QVGSFVPCDRAS--ISVRDC 701 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a--------------------~~g~~vp~~~~~--~~~~d~ 701 (888)
.+.++++|++.+|++++|+||||||||||+|+++++.... +.-.|+|....- .++.+.
T Consensus 22 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~~ 101 (207)
T cd03369 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSN 101 (207)
T ss_pred ccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHHH
Confidence 5788999999999999999999999999999998763211 111244443211 122222
Q ss_pred H-----------HHhcCCchhhhhccchhHHHHHHH-HHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCC
Q 002722 702 I-----------FARVGAGDCQLRGVSTFMQEMLET-ASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIR 769 (888)
Q Consensus 702 i-----------~~~~~~~d~~~~~~s~f~~e~~~~-~~il~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~ 769 (888)
+ ...+. +......+|+++++. +.+...+.+|+++|||||++|+|+.....+ +.++..+. .|
T Consensus 102 l~~~~~~~~~~~~~~l~----~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l-~~~l~~~~--~~ 174 (207)
T cd03369 102 LDPFDEYSDEEIYGALR----VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALI-QKTIREEF--TN 174 (207)
T ss_pred hcccCCCCHHHHHHHhh----ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHH-HHHHHHhc--CC
Confidence 1 11111 223445666655554 444455789999999999999999888777 56666654 38
Q ss_pred CeEEEEecChhHHHHhhh
Q 002722 770 APTLFATHFHELTALAHE 787 (888)
Q Consensus 770 ~~~l~~TH~~~l~~~~~~ 787 (888)
.++|++||+.+....+++
T Consensus 175 ~tiii~th~~~~~~~~d~ 192 (207)
T cd03369 175 STILTIAHRLRTIIDYDK 192 (207)
T ss_pred CEEEEEeCCHHHHhhCCE
Confidence 999999999887655665
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.9e-15 Score=161.23 Aligned_cols=139 Identities=17% Similarity=0.109 Sum_probs=99.1
Q ss_pred ccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhcCc----------------------------------ccc
Q 002722 645 IPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGS----------------------------------FVP 690 (888)
Q Consensus 645 v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~g~----------------------------------~vp 690 (888)
+.+++++ +.+|++++|+||||||||||||+++++.-. ..|. ++|
T Consensus 16 ~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p-~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~ 93 (255)
T cd03236 16 KLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKP-NLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKP 93 (255)
T ss_pred hhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCC-CCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeec
Confidence 5567774 789999999999999999999999875421 1111 111
Q ss_pred cccccc------------------cHHHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChh
Q 002722 691 CDRASI------------------SVRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTY 751 (888)
Q Consensus 691 ~~~~~~------------------~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~ 751 (888)
...... .....++.++|..+........+++++++...+.+ .+.+|+++|+|||++|+|+.
T Consensus 94 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~ 173 (255)
T cd03236 94 QYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIK 173 (255)
T ss_pred chhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHH
Confidence 110000 11234566677776666677788877766655554 47899999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEecChhHHH-Hhhh
Q 002722 752 DGFGLAWAICEHLVEEIRAPTLFATHFHELTA-LAHE 787 (888)
Q Consensus 752 ~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~-~~~~ 787 (888)
....+ ..+++.+.+ .++++|++||+++... ++++
T Consensus 174 ~~~~l-~~~l~~l~~-~~~tIIiiSHd~~~~~~~ad~ 208 (255)
T cd03236 174 QRLNA-ARLIRELAE-DDNYVLVVEHDLAVLDYLSDY 208 (255)
T ss_pred HHHHH-HHHHHHHHh-cCCEEEEEECCHHHHHHhCCE
Confidence 88888 566677766 5899999999987765 6665
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.3e-15 Score=160.89 Aligned_cols=141 Identities=15% Similarity=0.111 Sum_probs=95.7
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhh----cC-----------------------ccccccccc-
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ----VG-----------------------SFVPCDRAS- 695 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~----~g-----------------------~~vp~~~~~- 695 (888)
.+.++++|++.+|++++|+||||||||||+|+++++..... .| .|+|.....
T Consensus 18 ~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 97 (251)
T PRK14249 18 QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPF 97 (251)
T ss_pred eEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccC
Confidence 46779999999999999999999999999999988643210 11 233333211
Q ss_pred -ccHHHHH----------------------HHhcCCc----hhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCC
Q 002722 696 -ISVRDCI----------------------FARVGAG----DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRG 747 (888)
Q Consensus 696 -~~~~d~i----------------------~~~~~~~----d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~g 747 (888)
.++.+.+ +.+++.. +........+|+++++...+.+ .+.+|+++|||||++|
T Consensus 98 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~ 177 (251)
T PRK14249 98 PKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSA 177 (251)
T ss_pred cCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 1112211 1222321 1223444567766666555544 5789999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
+|+.....+ ..++..+. .++++|++||+.+.. .++++
T Consensus 178 LD~~~~~~l-~~~l~~~~--~~~tilivsh~~~~~~~~~d~ 215 (251)
T PRK14249 178 LDPVSTMRI-EELMQELK--QNYTIAIVTHNMQQAARASDW 215 (251)
T ss_pred CCHHHHHHH-HHHHHHHh--cCCEEEEEeCCHHHHHhhCCE
Confidence 999888888 55666664 378999999998765 46666
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.6e-15 Score=179.20 Aligned_cols=142 Identities=11% Similarity=0.068 Sum_probs=102.9
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh---------h-------------------hcCcccccccc-
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM---------A-------------------QVGSFVPCDRA- 694 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~---------a-------------------~~g~~vp~~~~- 694 (888)
.+.++++|++.+|++++|+||||||||||||+++++... . ++ .|+|+...
T Consensus 298 ~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i-~~v~q~~~l 376 (520)
T TIGR03269 298 KAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYI-GILHQEYDL 376 (520)
T ss_pred eEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhE-EEEccCccc
Confidence 577899999999999999999999999999999865311 0 01 24444321
Q ss_pred --cccHH--------------------HHHHHhcCCch-----hhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCC
Q 002722 695 --SISVR--------------------DCIFARVGAGD-----CQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGR 746 (888)
Q Consensus 695 --~~~~~--------------------d~i~~~~~~~d-----~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~ 746 (888)
.+.+. ..++.++|..+ ........+|+++++...+++ .+.+|+++||||||+
T Consensus 377 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~ 456 (520)
T TIGR03269 377 YPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTG 456 (520)
T ss_pred CCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 11111 12445566643 345666788888777766555 478999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 747 GTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 747 gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
|+|+.....+ ..++..+.++.|.++|++||+.+.+ +++++
T Consensus 457 ~LD~~~~~~l-~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~ 497 (520)
T TIGR03269 457 TMDPITKVDV-THSILKAREEMEQTFIIVSHDMDFVLDVCDR 497 (520)
T ss_pred cCCHHHHHHH-HHHHHHHHHHcCcEEEEEeCCHHHHHHhCCE
Confidence 9999988888 5666666553589999999998765 56776
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-15 Score=178.84 Aligned_cols=142 Identities=13% Similarity=0.074 Sum_probs=104.3
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh--------h-------------hcCcccccccc------cc
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------A-------------QVGSFVPCDRA------SI 696 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~--------a-------------~~g~~vp~~~~------~~ 696 (888)
.+.++++|++.+|++++|+||||||||||||+++++... . +.-.|+|+... ..
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 346 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVH 346 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCC
Confidence 477899999999999999999999999999999765310 0 00113333210 00
Q ss_pred c---------------------------HHHHHHHhcCCc-hhhhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCC
Q 002722 697 S---------------------------VRDCIFARVGAG-DCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRG 747 (888)
Q Consensus 697 ~---------------------------~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~~-~~~~slvllDEp~~g 747 (888)
+ .+..++.+++.. +.......++|+++++...+++. +.+|+|+||||||+|
T Consensus 347 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~ 426 (501)
T PRK11288 347 SVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRG 426 (501)
T ss_pred CHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCC
Confidence 1 122355666763 45666778899888877666654 679999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
+|+.....+ ..++..+.+ .|.++|++|||.+.. .++++
T Consensus 427 LD~~~~~~l-~~~l~~l~~-~g~tviivsHd~~~~~~~~d~ 465 (501)
T PRK11288 427 IDVGAKHEI-YNVIYELAA-QGVAVLFVSSDLPEVLGVADR 465 (501)
T ss_pred CCHhHHHHH-HHHHHHHHh-CCCEEEEECCCHHHHHhhCCE
Confidence 999998888 667777776 589999999998766 57776
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-15 Score=179.10 Aligned_cols=142 Identities=10% Similarity=0.054 Sum_probs=103.4
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh---------------------hhcCcccccccc------cc
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM---------------------AQVGSFVPCDRA------SI 696 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~---------------------a~~g~~vp~~~~------~~ 696 (888)
.+.++++|++.+|++++|+||||||||||+|+++++... .+.-.|+|+... ..
T Consensus 262 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 341 (491)
T PRK10982 262 PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYL 341 (491)
T ss_pred cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCC
Confidence 478899999999999999999999999999999865311 000123443310 01
Q ss_pred cH---------------------------HHHHHHhcCCc-hhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCC
Q 002722 697 SV---------------------------RDCIFARVGAG-DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRG 747 (888)
Q Consensus 697 ~~---------------------------~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~g 747 (888)
.+ +..++.+++.. +.......++|+++++...+.+ .+.+|.++||||||+|
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~g 421 (491)
T PRK10982 342 DIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRG 421 (491)
T ss_pred cHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 10 12234455553 3456667788888877766655 4789999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
+|+.....+ +.++..+.+ .|.++|++||+.+.. .++++
T Consensus 422 LD~~~~~~~-~~~l~~l~~-~~~tvi~vsHd~~~~~~~~d~ 460 (491)
T PRK10982 422 IDVGAKFEI-YQLIAELAK-KDKGIIIISSEMPELLGITDR 460 (491)
T ss_pred cChhHHHHH-HHHHHHHHH-CCCEEEEECCChHHHHhhCCE
Confidence 999988888 667777776 589999999997765 57776
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.4e-15 Score=161.53 Aligned_cols=142 Identities=16% Similarity=0.078 Sum_probs=97.1
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh-------h--------------------hcCcccccccc-
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-------A--------------------QVGSFVPCDRA- 694 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~-------a--------------------~~g~~vp~~~~- 694 (888)
..+.++++|++.+|++++|+||||||||||+|+++++... + +.-.|+|.+..
T Consensus 21 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 100 (261)
T PRK14263 21 FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNP 100 (261)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCcc
Confidence 3567799999999999999999999999999999876432 0 01123333321
Q ss_pred -cccHHH--------------------HHHHhcCCch----hhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCC
Q 002722 695 -SISVRD--------------------CIFARVGAGD----CQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGT 748 (888)
Q Consensus 695 -~~~~~d--------------------~i~~~~~~~d----~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gt 748 (888)
..++.+ .++.+++... ........+|+++++...+.+ .+.+|+++|||||++|+
T Consensus 101 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgL 180 (261)
T PRK14263 101 FSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSAL 180 (261)
T ss_pred ccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccC
Confidence 112222 2233334322 122334567777766655554 47899999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCeEEEEecChhH-HHHhhh
Q 002722 749 STYDGFGLAWAICEHLVEEIRAPTLFATHFHEL-TALAHE 787 (888)
Q Consensus 749 d~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l-~~~~~~ 787 (888)
|+.....+ +.++..+.+ +.++|++||+++. .+++++
T Consensus 181 D~~~~~~l-~~~l~~~~~--~~tii~isH~~~~i~~~~d~ 217 (261)
T PRK14263 181 DPIATRRV-EELMVELKK--DYTIALVTHNMQQAIRVADT 217 (261)
T ss_pred CHHHHHHH-HHHHHHHhc--CCeEEEEeCCHHHHHHhCCE
Confidence 99888888 566666653 6899999999875 457776
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.2e-15 Score=159.99 Aligned_cols=141 Identities=17% Similarity=0.127 Sum_probs=94.9
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh----hhcC-----------------------ccccccccc-
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----AQVG-----------------------SFVPCDRAS- 695 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~----a~~g-----------------------~~vp~~~~~- 695 (888)
.+.++++|++.+|++++|+||||||||||+|+++++.-. ...| .|+|+....
T Consensus 24 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 103 (264)
T PRK14243 24 LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPF 103 (264)
T ss_pred EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCccc
Confidence 467799999999999999999999999999999876421 0111 123332110
Q ss_pred -ccHHHHH--------------------HHhcCCch----hhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCC
Q 002722 696 -ISVRDCI--------------------FARVGAGD----CQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTS 749 (888)
Q Consensus 696 -~~~~d~i--------------------~~~~~~~d----~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd 749 (888)
.++.+.+ +..++..+ ........+|+++++...+.+ .+.+|+++|||||++|+|
T Consensus 104 ~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD 183 (264)
T PRK14243 104 PKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALD 183 (264)
T ss_pred cccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 1122211 22222211 122334457776666655544 478999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCCeEEEEecChhH-HHHhhh
Q 002722 750 TYDGFGLAWAICEHLVEEIRAPTLFATHFHEL-TALAHE 787 (888)
Q Consensus 750 ~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l-~~~~~~ 787 (888)
+.....+ ..++..+.+ +.++|++||+.+. .+++++
T Consensus 184 ~~~~~~l-~~~L~~~~~--~~tvi~vtH~~~~~~~~~d~ 219 (264)
T PRK14243 184 PISTLRI-EELMHELKE--QYTIIIVTHNMQQAARVSDM 219 (264)
T ss_pred HHHHHHH-HHHHHHHhc--CCEEEEEecCHHHHHHhCCE
Confidence 9988888 666677765 5799999999765 467766
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.4e-15 Score=162.49 Aligned_cols=142 Identities=15% Similarity=0.172 Sum_probs=96.3
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh----hhcC-----------------------ccccccccc
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----AQVG-----------------------SFVPCDRAS 695 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~----a~~g-----------------------~~vp~~~~~ 695 (888)
..+.++++|++.+|++++|+||||||||||||+++++..+ ...| .|+|.+...
T Consensus 37 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 116 (271)
T PRK14238 37 DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNP 116 (271)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCcc
Confidence 3577899999999999999999999999999999986531 1111 233333211
Q ss_pred --ccHHHHHH----------------------HhcC----CchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCC
Q 002722 696 --ISVRDCIF----------------------ARVG----AGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGR 746 (888)
Q Consensus 696 --~~~~d~i~----------------------~~~~----~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~ 746 (888)
.++.+.+. ..++ ..+.+......+|+++++...+.+ .+.+|+++|||||++
T Consensus 117 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~ 196 (271)
T PRK14238 117 FPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTS 196 (271)
T ss_pred ccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 12222221 1111 111223344567766666555544 478999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 747 GTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 747 gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
|+|+.....+ ..++..+.+ +.++|++||+.+.. .++++
T Consensus 197 ~LD~~~~~~l-~~~l~~~~~--~~tiiivsH~~~~i~~~~d~ 235 (271)
T PRK14238 197 ALDPISTLKV-EELVQELKK--DYSIIIVTHNMQQAARISDK 235 (271)
T ss_pred cCCHHHHHHH-HHHHHHHHc--CCEEEEEEcCHHHHHHhCCE
Confidence 9999988888 556666654 68999999998765 57776
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.9e-15 Score=161.02 Aligned_cols=143 Identities=17% Similarity=0.140 Sum_probs=97.0
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh----hcC-----------------------cccccccc--
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA----QVG-----------------------SFVPCDRA-- 694 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a----~~g-----------------------~~vp~~~~-- 694 (888)
.+.++++|++.+|++++|+|||||||||||++++++.... ..| .|+|.+..
T Consensus 21 ~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~ 100 (261)
T PRK14258 21 KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLF 100 (261)
T ss_pred eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccC
Confidence 5778999999999999999999999999999998864321 011 12232211
Q ss_pred cccHHHHH----------------------HHhcCCch----hhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCC
Q 002722 695 SISVRDCI----------------------FARVGAGD----CQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRG 747 (888)
Q Consensus 695 ~~~~~d~i----------------------~~~~~~~d----~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~g 747 (888)
..++.+.+ +..++..+ ........+|+++++...+.+ .+.+|+++|||||++|
T Consensus 101 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~ 180 (261)
T PRK14258 101 PMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFG 180 (261)
T ss_pred cccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 11222211 22233211 223344567777766655554 4789999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
+|+.....+ ..++..++...|.++|++||+++.. +++++
T Consensus 181 LD~~~~~~l-~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~ 220 (261)
T PRK14258 181 LDPIASMKV-ESLIQSLRLRSELTMVIVSHNLHQVSRLSDF 220 (261)
T ss_pred CCHHHHHHH-HHHHHHHHHhCCCEEEEEECCHHHHHHhcCE
Confidence 999888887 5556666543489999999998765 57776
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-15 Score=180.31 Aligned_cols=143 Identities=17% Similarity=0.086 Sum_probs=106.7
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhh-------cCcccccccc---ccc----------------
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ-------VGSFVPCDRA---SIS---------------- 697 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~-------~g~~vp~~~~---~~~---------------- 697 (888)
+..++++|++.+|++++|+||||||||||+|+++++..... .-.|+|+... ..+
T Consensus 353 ~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~ 432 (590)
T PRK13409 353 FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSY 432 (590)
T ss_pred EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHH
Confidence 34677888889999999999999999999999987642211 0124444321 111
Q ss_pred HHHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEe
Q 002722 698 VRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFAT 776 (888)
Q Consensus 698 ~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~T 776 (888)
..+.++.++|..+......+++|++++|...+++ .+.+|+++||||||+|+|+.....+ ..+++.++++.|.++|++|
T Consensus 433 ~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l-~~~l~~l~~~~g~tviivs 511 (590)
T PRK13409 433 YKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAV-AKAIRRIAEEREATALVVD 511 (590)
T ss_pred HHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHH-HHHHHHHHHhCCCEEEEEe
Confidence 1234567778877777888899987777655555 4789999999999999999988888 6666677654589999999
Q ss_pred cChhHH-HHhhh
Q 002722 777 HFHELT-ALAHE 787 (888)
Q Consensus 777 H~~~l~-~~~~~ 787 (888)
||.+++ .++++
T Consensus 512 HD~~~~~~~aDr 523 (590)
T PRK13409 512 HDIYMIDYISDR 523 (590)
T ss_pred CCHHHHHHhCCE
Confidence 998776 46766
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.5e-15 Score=182.54 Aligned_cols=152 Identities=13% Similarity=0.081 Sum_probs=111.4
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh-----------------------------------hcCcc
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA-----------------------------------QVGSF 688 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a-----------------------------------~~g~~ 688 (888)
.+.++++|++.+|++++|+||||||||||+|+++++.... ++ .|
T Consensus 30 ~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~i-g~ 108 (623)
T PRK10261 30 AAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADM-AM 108 (623)
T ss_pred eEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCE-EE
Confidence 5778999999999999999999999999999998653110 12 23
Q ss_pred ccccc-----ccccH----------------------HHHHHHhcCCch---hhhhccchhHHHHHHHHHHHHh-CCCCc
Q 002722 689 VPCDR-----ASISV----------------------RDCIFARVGAGD---CQLRGVSTFMQEMLETASILKG-ATDRS 737 (888)
Q Consensus 689 vp~~~-----~~~~~----------------------~d~i~~~~~~~d---~~~~~~s~f~~e~~~~~~il~~-~~~~s 737 (888)
|++.. ..+++ +..++..+|..+ .+.....++|++|+|...|+++ +.+|+
T Consensus 109 v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~ 188 (623)
T PRK10261 109 IFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPA 188 (623)
T ss_pred EEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCC
Confidence 44332 11111 123455566642 3556678899888887666654 78999
Q ss_pred EEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEE
Q 002722 738 LIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 738 lvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
|+||||||+|+|+.....+ ..+++.+.++.|.++|++||+.+.+ +++++ +..+.++++.
T Consensus 189 lLllDEPt~~LD~~~~~~l-~~ll~~l~~~~g~tvi~itHdl~~~~~~adr---------i~vl~~G~i~ 248 (623)
T PRK10261 189 VLIADEPTTALDVTIQAQI-LQLIKVLQKEMSMGVIFITHDMGVVAEIADR---------VLVMYQGEAV 248 (623)
T ss_pred EEEEeCCCCccCHHHHHHH-HHHHHHHHHhcCCEEEEEcCCHHHHHHhCCE---------EEEeeCCeec
Confidence 9999999999999988888 6677778753589999999998765 68887 5556666654
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-15 Score=179.40 Aligned_cols=138 Identities=14% Similarity=0.121 Sum_probs=98.0
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh----------hcCcccccccc---ccc-------------
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA----------QVGSFVPCDRA---SIS------------- 697 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a----------~~g~~vp~~~~---~~~------------- 697 (888)
.+.++++|++.+|++++|+||||||||||||+++++.... .+| |+|.... ..+
T Consensus 15 ~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~-~~~q~~~~~~~~tv~e~l~~~~~~~~ 93 (530)
T PRK15064 15 PLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLG-KLRQDQFAFEEFTVLDTVIMGHTELW 93 (530)
T ss_pred EeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEE-EEeccCCcCCCCcHHHHHHHhhHHHH
Confidence 4677999999999999999999999999999998764221 122 3333210 001
Q ss_pred ----------------------------------------HHHHHHHhcCCchhhh-hccchhHHHHHHHHHHHHh-CCC
Q 002722 698 ----------------------------------------VRDCIFARVGAGDCQL-RGVSTFMQEMLETASILKG-ATD 735 (888)
Q Consensus 698 ----------------------------------------~~d~i~~~~~~~d~~~-~~~s~f~~e~~~~~~il~~-~~~ 735 (888)
.+..++.++|..+... ...+++|+++++...+++. +.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~ 173 (530)
T PRK15064 94 EVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSN 173 (530)
T ss_pred HHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhcC
Confidence 1123455566654332 3467888888877666654 779
Q ss_pred CcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 736 RSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 736 ~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
|+++||||||+|+|+.....+ ..++ .+ .|.++|++||+.++. +++++
T Consensus 174 p~lLlLDEPt~~LD~~~~~~l-~~~l---~~-~~~tiiivsHd~~~~~~~~d~ 221 (530)
T PRK15064 174 PDILLLDEPTNNLDINTIRWL-EDVL---NE-RNSTMIIISHDRHFLNSVCTH 221 (530)
T ss_pred CCEEEEcCCCcccCHHHHHHH-HHHH---Hh-CCCeEEEEeCCHHHHHhhcce
Confidence 999999999999999887776 3333 34 588999999998765 56766
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.61 E-value=3e-15 Score=157.18 Aligned_cols=142 Identities=16% Similarity=0.151 Sum_probs=94.2
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHH-hhhhHHH--hh---------hhcC-ccccc--------------cc---
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFI-RQVGVNI--LM---------AQVG-SFVPC--------------DR--- 693 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTll-r~i~~~~--~~---------a~~g-~~vp~--------------~~--- 693 (888)
.+.++++|++.+|++++|+||||||||||+ ..+.... .+ ...| .+.|. +.
T Consensus 9 ~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (226)
T cd03270 9 HNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAIDQKTTS 88 (226)
T ss_pred hccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCccccccccCCCceEEecCCCCC
Confidence 567799999999999999999999999996 2221000 00 0000 01110 00
Q ss_pred --c--cccH-------H------------HHHHHhcCCch-hhhhccchhHHHHHHHHHHHHh-CCCC--cEEEEeCCCC
Q 002722 694 --A--SISV-------R------------DCIFARVGAGD-CQLRGVSTFMQEMLETASILKG-ATDR--SLIIIDELGR 746 (888)
Q Consensus 694 --~--~~~~-------~------------d~i~~~~~~~d-~~~~~~s~f~~e~~~~~~il~~-~~~~--slvllDEp~~ 746 (888)
. .++. + ..++.+++..+ ......+++|+++++...+.+. +.+| +++|+|||++
T Consensus 89 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~ 168 (226)
T cd03270 89 RNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSI 168 (226)
T ss_pred CCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcc
Confidence 0 0000 0 11233445544 3566778888888777666654 4555 6999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 747 GTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 747 gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
|+|+.....+ ..++..+.+ .|.++|++||+++...++++
T Consensus 169 gLD~~~~~~l-~~~l~~~~~-~g~tii~itH~~~~~~~~d~ 207 (226)
T cd03270 169 GLHPRDNDRL-IETLKRLRD-LGNTVLVVEHDEDTIRAADH 207 (226)
T ss_pred CCCHHHHHHH-HHHHHHHHh-CCCEEEEEEeCHHHHHhCCE
Confidence 9999988888 555666666 58999999999988777766
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.1e-15 Score=160.28 Aligned_cols=142 Identities=15% Similarity=0.093 Sum_probs=96.7
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh-----------------------------hhcCccccccc
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-----------------------------AQVGSFVPCDR 693 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~-----------------------------a~~g~~vp~~~ 693 (888)
..+.++++|++.+|++++|+||||||||||+|+++++.-. .+.-.|+|...
T Consensus 29 ~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~ 108 (265)
T PRK14252 29 YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKP 108 (265)
T ss_pred eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCC
Confidence 3578899999999999999999999999999999876421 00012344332
Q ss_pred cc--ccHHHH----------------------HHHhcCCc----hhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCC
Q 002722 694 AS--ISVRDC----------------------IFARVGAG----DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDEL 744 (888)
Q Consensus 694 ~~--~~~~d~----------------------i~~~~~~~----d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp 744 (888)
.. .++.+. .+..++.. +........+|+++++...+.+ .+.+|+++|||||
T Consensus 109 ~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 188 (265)
T PRK14252 109 NPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEP 188 (265)
T ss_pred cCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 10 011111 12222321 2223344567766666655554 5789999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 745 GRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 745 ~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
++|+|+.....+ ..++..+.+ ++++|++||+.+.. +++++
T Consensus 189 t~gLD~~~~~~l-~~~l~~l~~--~~tiiivth~~~~~~~~~d~ 229 (265)
T PRK14252 189 TSALDPIATASI-EELISDLKN--KVTILIVTHNMQQAARVSDY 229 (265)
T ss_pred CccCCHHHHHHH-HHHHHHHHh--CCEEEEEecCHHHHHHhCCE
Confidence 999999888887 556666654 68999999998766 57776
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.5e-15 Score=180.63 Aligned_cols=152 Identities=16% Similarity=0.095 Sum_probs=112.3
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh------------------------hhcCcccccccc-----
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM------------------------AQVGSFVPCDRA----- 694 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~------------------------a~~g~~vp~~~~----- 694 (888)
.+.++++|++.+|++++|+||||||||||+|+++++... .++ .|+|+...
T Consensus 338 ~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i-~~v~Q~~~~~l~~ 416 (623)
T PRK10261 338 HAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDI-QFIFQDPYASLDP 416 (623)
T ss_pred EEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCe-EEEecCchhhcCC
Confidence 477899999999999999999999999999999865311 012 34554320
Q ss_pred cccH----------------------HHHHHHhcCCc-hhhhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCh
Q 002722 695 SISV----------------------RDCIFARVGAG-DCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTST 750 (888)
Q Consensus 695 ~~~~----------------------~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~~-~~~~slvllDEp~~gtd~ 750 (888)
...+ +..++.++|.. +........+|+++++...|++. +.+|+|+||||||+|+|+
T Consensus 417 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~ 496 (623)
T PRK10261 417 RQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDV 496 (623)
T ss_pred CCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 1111 12345566764 44566678899888887666654 789999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEE
Q 002722 751 YDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 751 ~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
.....+ ..++..+.++.|.++||+|||++++ .++++ +..+.++++.
T Consensus 497 ~~~~~i-~~ll~~l~~~~g~tvi~isHdl~~v~~~~dr---------i~vl~~G~iv 543 (623)
T PRK10261 497 SIRGQI-INLLLDLQRDFGIAYLFISHDMAVVERISHR---------VAVMYLGQIV 543 (623)
T ss_pred HHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE---------EEEEECCEEE
Confidence 988888 6667777653589999999998776 57777 5556666654
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.5e-15 Score=169.19 Aligned_cols=155 Identities=17% Similarity=0.180 Sum_probs=115.3
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh--------------------hcC--------ccccc---
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA--------------------QVG--------SFVPC--- 691 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a--------------------~~g--------~~vp~--- 691 (888)
....++++|++.+|++++|.|.||||||||+|++++..-.. +.| ..+|.
T Consensus 21 V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsV 100 (500)
T COG1129 21 VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSV 100 (500)
T ss_pred ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccH
Confidence 35678999999999999999999999999999998753211 011 11111
Q ss_pred --------cccc-ccHH---------HHHHHhcCCchhhhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhh
Q 002722 692 --------DRAS-ISVR---------DCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYD 752 (888)
Q Consensus 692 --------~~~~-~~~~---------d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~slvllDEp~~gtd~~~ 752 (888)
+... .+++ ..++.++|...........++...+|+..|.++ +.+..++||||||+.|+..+
T Consensus 101 aeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E 180 (500)
T COG1129 101 AENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKE 180 (500)
T ss_pred HHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 1011 2222 246677777544777778888888888888776 45777999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEecCh-hHHHHhhhccccccccccccEeEEEEEEE
Q 002722 753 GFGLAWAICEHLVEEIRAPTLFATHFH-ELTALAHENANEFNTKQMVGVANYHVSAH 808 (888)
Q Consensus 753 ~~~i~~~il~~l~~~~~~~~l~~TH~~-~l~~~~~~~~~~~~~~~~~~v~~~~~~~~ 808 (888)
...+ ..+++.|.+ .|..+||+||.+ |+.++||+ +..++++.....
T Consensus 181 ~~~L-f~~ir~Lk~-~Gv~ii~ISHrl~Ei~~i~Dr---------itVlRDG~~v~~ 226 (500)
T COG1129 181 TERL-FDLIRRLKA-QGVAIIYISHRLDEVFEIADR---------ITVLRDGRVVGT 226 (500)
T ss_pred HHHH-HHHHHHHHh-CCCEEEEEcCcHHHHHHhcCE---------EEEEeCCEEeee
Confidence 9999 778888987 799999999995 66789998 666666665443
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.4e-15 Score=161.48 Aligned_cols=152 Identities=13% Similarity=0.060 Sum_probs=101.8
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh----hhcC-----------------------ccccccccc
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----AQVG-----------------------SFVPCDRAS 695 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~----a~~g-----------------------~~vp~~~~~ 695 (888)
..+.++++|++.+|++++|+||||||||||+|+++++... ...| .|+|.+..-
T Consensus 38 ~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l 117 (272)
T PRK14236 38 KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNP 117 (272)
T ss_pred eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCcc
Confidence 3578899999999999999999999999999999876421 0111 234433211
Q ss_pred --ccHHHHH----------------------HHhcCCch----hhhhccchhHHHHHHHHHHH-HhCCCCcEEEEeCCCC
Q 002722 696 --ISVRDCI----------------------FARVGAGD----CQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGR 746 (888)
Q Consensus 696 --~~~~d~i----------------------~~~~~~~d----~~~~~~s~f~~e~~~~~~il-~~~~~~slvllDEp~~ 746 (888)
.++.+.+ +..++..+ .+......+|+++++...+. ..+.+|+++|||||++
T Consensus 118 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~ 197 (272)
T PRK14236 118 FPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTS 197 (272)
T ss_pred CcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcc
Confidence 1222222 12223221 12233456776666655544 4578999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEE
Q 002722 747 GTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 747 gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
|+|+.....+ +.++..+.+ +.++|++||+.+.. +++++ +..+.++++.
T Consensus 198 gLD~~~~~~l-~~~L~~~~~--~~tiiivtH~~~~~~~~~d~---------i~~l~~G~i~ 246 (272)
T PRK14236 198 ALDPISTLKI-EELITELKS--KYTIVIVTHNMQQAARVSDY---------TAFMYMGKLV 246 (272)
T ss_pred cCCHHHHHHH-HHHHHHHHh--CCeEEEEeCCHHHHHhhCCE---------EEEEECCEEE
Confidence 9999888877 666666664 68999999998765 57776 5555555543
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.8e-15 Score=164.56 Aligned_cols=167 Identities=14% Similarity=0.104 Sum_probs=112.7
Q ss_pred cEEEEcCcCceeeeccCcccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh-------h--------------
Q 002722 625 DIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-------A-------------- 683 (888)
Q Consensus 625 ~l~i~~~rhp~~~~~~~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~-------a-------------- 683 (888)
.+.+++...-+- .+...+.++++|++.+|++++|+|||||||||||++++++.-. +
T Consensus 80 ~i~~~nls~~y~---~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 80 VFEIRNFNFWYM---NRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred eEEEEeeEEEec---CCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 466665443221 1224688999999999999999999999999999999876421 0
Q ss_pred ------hcCccccccccc--ccHHHHH----------------------HHhcCC----chhhhhccchhHHHHHHHHHH
Q 002722 684 ------QVGSFVPCDRAS--ISVRDCI----------------------FARVGA----GDCQLRGVSTFMQEMLETASI 729 (888)
Q Consensus 684 ------~~g~~vp~~~~~--~~~~d~i----------------------~~~~~~----~d~~~~~~s~f~~e~~~~~~i 729 (888)
+.-.|+|+...- .++.+.+ +..++. .+.+......+|+++++...+
T Consensus 157 ~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~L 236 (329)
T PRK14257 157 SSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCI 236 (329)
T ss_pred chHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHH
Confidence 111244444311 1222221 223332 223445567788777776665
Q ss_pred HH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEE
Q 002722 730 LK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 730 l~-~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
++ .+.+|+++|||||++|+|+.....+ ..++..+.+ ++++|++||+++.. +++++ +..+.++++.
T Consensus 237 ARAl~~~p~IlLLDEPts~LD~~~~~~i-~~~i~~l~~--~~Tii~iTH~l~~i~~~~Dr---------iivl~~G~i~ 303 (329)
T PRK14257 237 ARAIALEPEVLLMDEPTSALDPIATAKI-EELILELKK--KYSIIIVTHSMAQAQRISDE---------TVFFYQGWIE 303 (329)
T ss_pred HHHHHhCCCEEEEeCCcccCCHHHHHHH-HHHHHHHhc--CCEEEEEeCCHHHHHHhCCE---------EEEEECCEEE
Confidence 55 4789999999999999999888887 666666664 69999999998875 46887 5556665554
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.9e-14 Score=173.15 Aligned_cols=150 Identities=16% Similarity=0.081 Sum_probs=106.1
Q ss_pred cccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh----------hcCccccccc-----ccccH--------
Q 002722 642 VNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA----------QVGSFVPCDR-----ASISV-------- 698 (888)
Q Consensus 642 ~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a----------~~g~~vp~~~-----~~~~~-------- 698 (888)
+..+.++++|++.+|++++|+||||||||||||++++...+. ++| |+|+.. ....+
T Consensus 324 ~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig-y~~Q~~~~~l~~~~~~~~~~~~~~ 402 (638)
T PRK10636 324 DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLG-YFAQHQLEFLRADESPLQHLARLA 402 (638)
T ss_pred CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEE-EecCcchhhCCccchHHHHHHHhC
Confidence 346889999999999999999999999999999998764221 122 344321 00011
Q ss_pred -------HHHHHHhcCCc-hhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCC
Q 002722 699 -------RDCIFARVGAG-DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIR 769 (888)
Q Consensus 699 -------~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~ 769 (888)
+..++.+++.. +......+++|+++++...+++ .+.+|.++||||||+|+|+.....+.. ++..+ +
T Consensus 403 ~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~-~L~~~----~ 477 (638)
T PRK10636 403 PQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTE-ALIDF----E 477 (638)
T ss_pred chhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHH-HHHHc----C
Confidence 12355666764 3566677889887777655555 478999999999999999988877733 33333 3
Q ss_pred CeEEEEecChhHH-HHhhhccccccccccccEeEEEEE
Q 002722 770 APTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 770 ~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
.++|++|||.++. .++++ +..+.++++.
T Consensus 478 gtvi~vSHd~~~~~~~~d~---------i~~l~~G~i~ 506 (638)
T PRK10636 478 GALVVVSHDRHLLRSTTDD---------LYLVHDGKVE 506 (638)
T ss_pred CeEEEEeCCHHHHHHhCCE---------EEEEECCEEE
Confidence 4899999998766 57777 5556566553
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.1e-15 Score=160.43 Aligned_cols=141 Identities=13% Similarity=-0.048 Sum_probs=94.0
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh--------------------hhcCcccccccccc--cH---
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRASI--SV--- 698 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~--------------------a~~g~~vp~~~~~~--~~--- 698 (888)
.+.++++|++.+|++++|+||||||||||+|+++++... .+.-.|+|....-+ ++
T Consensus 35 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~tv~~n 114 (257)
T cd03288 35 PVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFN 114 (257)
T ss_pred cceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccccHHHHh
Confidence 577899999999999999999999999999999875321 01112344332110 00
Q ss_pred -----------HHHHHHhcCCchh-----------hhhccchhHHHHHHHHHH-HHhCCCCcEEEEeCCCCCCChhhHHH
Q 002722 699 -----------RDCIFARVGAGDC-----------QLRGVSTFMQEMLETASI-LKGATDRSLIIIDELGRGTSTYDGFG 755 (888)
Q Consensus 699 -----------~d~i~~~~~~~d~-----------~~~~~s~f~~e~~~~~~i-l~~~~~~slvllDEp~~gtd~~~~~~ 755 (888)
+...+...+..+. +......+|+++++...+ ...+.+|+++|||||++|+|+.....
T Consensus 115 l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~ 194 (257)
T cd03288 115 LDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENI 194 (257)
T ss_pred cCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHH
Confidence 1112222233221 122234677666655444 44578999999999999999987776
Q ss_pred HHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 756 LAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 756 i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
+ ..++..+. .++++|++||+++....+++
T Consensus 195 l-~~~l~~~~--~~~tiii~sh~~~~~~~~dr 223 (257)
T cd03288 195 L-QKVVMTAF--ADRTVVTIAHRVSTILDADL 223 (257)
T ss_pred H-HHHHHHhc--CCCEEEEEecChHHHHhCCE
Confidence 6 55566554 37999999999988766666
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.1e-15 Score=158.22 Aligned_cols=141 Identities=18% Similarity=0.115 Sum_probs=93.8
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHh--h--hhc-----------------------Ccccccccccc
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL--M--AQV-----------------------GSFVPCDRASI 696 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~--~--a~~-----------------------g~~vp~~~~~~ 696 (888)
.+.++++|++.+|++++|+||||||||||||+++++.- . ... -.|+|.....+
T Consensus 17 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 96 (250)
T PRK14266 17 HILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPF 96 (250)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccC
Confidence 56779999999999999999999999999999987631 1 011 12344332111
Q ss_pred --cHHHHH----------------------HHhcCCch----hhhhccchhHHHHHHHHHHH-HhCCCCcEEEEeCCCCC
Q 002722 697 --SVRDCI----------------------FARVGAGD----CQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRG 747 (888)
Q Consensus 697 --~~~d~i----------------------~~~~~~~d----~~~~~~s~f~~e~~~~~~il-~~~~~~slvllDEp~~g 747 (888)
++.+.+ +.++|..+ ........+|+++++...+. ..+.+|+++|||||++|
T Consensus 97 ~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~g 176 (250)
T PRK14266 97 PKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSA 176 (250)
T ss_pred cchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCcc
Confidence 111211 22223211 12333456666666554444 45789999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
+|+.....+ ..++..+.+ +.++|++||+++.. ..+++
T Consensus 177 LD~~~~~~l-~~~l~~~~~--~~tiii~sh~~~~~~~~~~~ 214 (250)
T PRK14266 177 LDPISTTKI-EDLIHKLKE--DYTIVIVTHNMQQATRVSKY 214 (250)
T ss_pred CCHHHHHHH-HHHHHHHhc--CCeEEEEECCHHHHHhhcCE
Confidence 999888888 556666653 78999999998755 45554
|
|
| >PF05188 MutS_II: MutS domain II; InterPro: IPR007860 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-14 Score=140.13 Aligned_cols=129 Identities=24% Similarity=0.332 Sum_probs=96.3
Q ss_pred cEEEEEeeccccCCceEEEEEEecCCceEEEEEecCchhHHHHHHHHHccCccEEEecCCCCCChhhHHHHHHhhhcCce
Q 002722 139 PVIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDALTRCGVM 218 (888)
Q Consensus 139 ~yl~aI~~~~~~~~~~iGla~~D~stGe~~~~ef~D~~~~~~L~t~L~~~~P~EIli~~~~~~~~~~~~l~~~l~~~~~~ 218 (888)
|||+||... +.+..+|+||+|+|||+|++++|.| +++|.+.|.+++|+|||++++... .........+......
T Consensus 1 Nyl~aI~~~--~~~~~~gla~~D~sTGe~~~~~~~d---~~~L~~~L~~~~P~EIi~~~~~~~-~~~~~~~~~~~~~~~~ 74 (137)
T PF05188_consen 1 NYLAAIYEK--NDEDSYGLAYIDLSTGEFYVTEFED---YSELKSELARLSPREIIIPEGFSS-SDISALLSSLKNSFFK 74 (137)
T ss_dssp -EEEEEEEE--TCSSEEEEEEEETTTTEEEEEEEEC---HHHHHHHHHHH-ESEEEEETTCSH-HHHHHHHHCCTTTCCE
T ss_pred CEEEEEEEe--cCCCEEEEEEEECCCCEEEEEEeCC---HHHHHHHHHhcCCeEEEEcCCCcc-cccchhhhhhccccce
Confidence 799999884 2346799999999999999999998 889999999999999999987321 1111222233333445
Q ss_pred eeecccccccchhHHHHHHHhhcCCCCCccccc-CCcccHHHHHHHHHHHHHHHcCc
Q 002722 219 LTERKKTEFKTRDLVQDLDRLVRGSVEPVRDLV-SGFEIAPGALGALLSYAELLSDE 274 (888)
Q Consensus 219 v~~~~~~~F~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~a~~AlgaLL~YL~~~~~~ 274 (888)
++..+.+.|+...+.+.+.+.+. .....+++. ...+.+++|+|+||+||+.++..
T Consensus 75 ~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~Al~all~Yl~~t~~~ 130 (137)
T PF05188_consen 75 VTETPSWYFDSEFASEDIEEQFG-VADLDGFGLEEDKELALSALGALLKYLEETQKS 130 (137)
T ss_dssp EEEETCGGGSHHHHHHHHHHHCT-SSSTCCCTTGGGGHHHHHHHHHHHHHHHHTTTC
T ss_pred eeecchhhhhhHHHHHHHHHhhc-cccccccCccCCCHHHHHHHHHHHHHHHHHCcc
Confidence 56677788888888888888885 344445543 55688999999999999999864
|
It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the connector domain (domain 2) found in proteins of the MutS family. The structure of the MutS connector domain consists of a parallel beta-sheet surrounded by four alpha helices, which is similar to the structure of the Holliday junction resolvase ruvC.; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2O8F_A 3THW_A 3THX_A 2O8C_A 3THY_A 2O8E_A 2O8B_A 3THZ_A 2O8D_A 2WTU_A .... |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.4e-15 Score=180.92 Aligned_cols=140 Identities=14% Similarity=0.144 Sum_probs=97.3
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhc-----C----ccccccc-----cccc-----------
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQV-----G----SFVPCDR-----ASIS----------- 697 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~-----g----~~vp~~~-----~~~~----------- 697 (888)
..+.++++|++.+|++++|+||||||||||||+++++..+... | .|+|... ..++
T Consensus 14 ~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~~~~~~ 93 (638)
T PRK10636 14 RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEYVIDGDREYRQ 93 (638)
T ss_pred ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCHHHHHHHhhHHHHH
Confidence 4577899999999999999999999999999999875422110 0 1222210 0000
Q ss_pred ----------------------------------HHHHHHHhcCCc-hhhhhccchhHHHHHHHHHHHH-hCCCCcEEEE
Q 002722 698 ----------------------------------VRDCIFARVGAG-DCQLRGVSTFMQEMLETASILK-GATDRSLIII 741 (888)
Q Consensus 698 ----------------------------------~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~-~~~~~slvll 741 (888)
.+..++.++|.. +......++||+++++...+.+ .+.+|+++||
T Consensus 94 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLL 173 (638)
T PRK10636 94 LEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLL 173 (638)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEEEE
Confidence 012234555654 3456667889988887766665 4789999999
Q ss_pred eCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 742 DELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 742 DEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
||||+|+|+.....+ .+.+.+ .+.++|++||+.++. .++++
T Consensus 174 DEPtn~LD~~~~~~L----~~~L~~-~~~tviivsHd~~~l~~~~d~ 215 (638)
T PRK10636 174 DEPTNHLDLDAVIWL----EKWLKS-YQGTLILISHDRDFLDPIVDK 215 (638)
T ss_pred cCCCCcCCHHHHHHH----HHHHHh-CCCeEEEEeCCHHHHHHhcCE
Confidence 999999999876655 334444 467999999998765 46665
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.7e-15 Score=193.96 Aligned_cols=153 Identities=12% Similarity=0.173 Sum_probs=116.6
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh--------------------hhcCcccccccc---cccH-
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRA---SISV- 698 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~--------------------a~~g~~vp~~~~---~~~~- 698 (888)
..+.++++|++.+|++++|+||||||||||||+++++... .++ .++|+... .+++
T Consensus 943 k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~I-G~~pQ~~~L~~~LTV~ 1021 (2272)
T TIGR01257 943 RPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSL-GMCPQHNILFHHLTVA 1021 (2272)
T ss_pred ceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcE-EEEecCCcCCCCCCHH
Confidence 4688999999999999999999999999999999876421 112 24454321 1111
Q ss_pred --------------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHH
Q 002722 699 --------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLA 757 (888)
Q Consensus 699 --------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~ 757 (888)
++.++.++|+.+......+++|++|+|...+++ .+.+|+++||||||+|+|+.....+
T Consensus 1022 E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l- 1100 (2272)
T TIGR01257 1022 EHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSI- 1100 (2272)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHH-
Confidence 234566777777777778899988888766655 4789999999999999999988888
Q ss_pred HHHHHHHHhcCCCeEEEEecChhHHH-HhhhccccccccccccEeEEEEEEE
Q 002722 758 WAICEHLVEEIRAPTLFATHFHELTA-LAHENANEFNTKQMVGVANYHVSAH 808 (888)
Q Consensus 758 ~~il~~l~~~~~~~~l~~TH~~~l~~-~~~~~~~~~~~~~~~~v~~~~~~~~ 808 (888)
+.+++.+. .|.++|++||+++.+. ++|+ +..+.++++.+.
T Consensus 1101 ~~lL~~l~--~g~TIIltTHdmdea~~laDr---------I~iL~~GkL~~~ 1141 (2272)
T TIGR01257 1101 WDLLLKYR--SGRTIIMSTHHMDEADLLGDR---------IAIISQGRLYCS 1141 (2272)
T ss_pred HHHHHHHh--CCCEEEEEECCHHHHHHhCCE---------EEEEECCEEEEe
Confidence 77887774 3899999999988774 7877 556667766554
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.8e-15 Score=158.04 Aligned_cols=141 Identities=14% Similarity=0.091 Sum_probs=95.9
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh----hcC-----------------------ccccccccc-
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA----QVG-----------------------SFVPCDRAS- 695 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a----~~g-----------------------~~vp~~~~~- 695 (888)
.+.++++|++.+|++++|+||||||||||||+++++.... ..| .|+|.+...
T Consensus 21 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~ 100 (259)
T PRK14260 21 KAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPF 100 (259)
T ss_pred EeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccC
Confidence 4778999999999999999999999999999999864310 011 123322210
Q ss_pred -ccHHHH----------------------HHHhcCCc----hhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCC
Q 002722 696 -ISVRDC----------------------IFARVGAG----DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRG 747 (888)
Q Consensus 696 -~~~~d~----------------------i~~~~~~~----d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~g 747 (888)
.++.+. ++.+++.. +........+|+++++...+++ .+.+|+++|||||++|
T Consensus 101 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~ 180 (259)
T PRK14260 101 PMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSA 180 (259)
T ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 111121 12223331 2233444567776666655544 4789999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
+|+.....+ +.++..+.+ +.++|++||+++.. +++++
T Consensus 181 LD~~~~~~l-~~~l~~~~~--~~tiii~tH~~~~i~~~~d~ 218 (259)
T PRK14260 181 LDPIATMKV-EELIHSLRS--ELTIAIVTHNMQQATRVSDF 218 (259)
T ss_pred CCHHHHHHH-HHHHHHHhc--CCEEEEEeCCHHHHHHhcCe
Confidence 999888887 566666654 58999999998765 56766
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4e-15 Score=144.55 Aligned_cols=143 Identities=19% Similarity=0.186 Sum_probs=107.1
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhc----C-c----------cccccccccc---H-------
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQV----G-S----------FVPCDRASIS---V------- 698 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~----g-~----------~vp~~~~~~~---~------- 698 (888)
.+..++++++.+|+++++.||+||||||+|+.+|+++-+++. + - .|.++.+-++ .
T Consensus 19 ~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvafg 98 (259)
T COG4525 19 SALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFG 98 (259)
T ss_pred hhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHHH
Confidence 466799999999999999999999999999999998755431 1 0 1222222222 1
Q ss_pred --------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHH
Q 002722 699 --------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDGFGLAWAICEH 763 (888)
Q Consensus 699 --------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~slvllDEp~~gtd~~~~~~i~~~il~~ 763 (888)
.++.+..+|..+.-.+..-.+|++|+|..-|.++ +.+|.+++||||+..+|......+ ..++-.
T Consensus 99 L~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~m-QelLld 177 (259)
T COG4525 99 LQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQM-QELLLD 177 (259)
T ss_pred HHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHH-HHHHHH
Confidence 2345566777766666677889999998777765 789999999999999999999998 444444
Q ss_pred HHhcCCCeEEEEecChhHHH-Hhhh
Q 002722 764 LVEEIRAPTLFATHFHELTA-LAHE 787 (888)
Q Consensus 764 l~~~~~~~~l~~TH~~~l~~-~~~~ 787 (888)
+.+..|..++++||+.+.+- ++++
T Consensus 178 lw~~tgk~~lliTH~ieEAlflatr 202 (259)
T COG4525 178 LWQETGKQVLLITHDIEEALFLATR 202 (259)
T ss_pred HHHHhCCeEEEEeccHHHHHhhhhe
Confidence 55558999999999987764 4444
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.4e-15 Score=152.28 Aligned_cols=134 Identities=13% Similarity=0.106 Sum_probs=90.2
Q ss_pred CCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh-----------hc---C------------ccccccccc-----
Q 002722 647 NDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA-----------QV---G------------SFVPCDRAS----- 695 (888)
Q Consensus 647 n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a-----------~~---g------------~~vp~~~~~----- 695 (888)
.++++++.+| +++|+||||||||||+++++++.-.. .+ | .++++....
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~ 92 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSII 92 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEE
Confidence 4566666778 99999999999999999998664111 00 0 122222211
Q ss_pred -ccHHHHHHHhcCCchhhhhccchhHHHHHHHHHHHHh-----CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCC
Q 002722 696 -ISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-----ATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIR 769 (888)
Q Consensus 696 -~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-----~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~ 769 (888)
..-++.++.. .+........+++++++...+.+. ..+++++|||||++|+|+.....+ ..+++.+.+ +
T Consensus 93 ~~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l-~~~l~~~~~--~ 166 (197)
T cd03278 93 SQGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERF-ARLLKEFSK--E 166 (197)
T ss_pred ehhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHH-HHHHHHhcc--C
Confidence 1123344444 233344556777777776655543 256799999999999999988888 556666654 6
Q ss_pred CeEEEEecChhHHHHhhh
Q 002722 770 APTLFATHFHELTALAHE 787 (888)
Q Consensus 770 ~~~l~~TH~~~l~~~~~~ 787 (888)
.++|++||++++.+.+++
T Consensus 167 ~tiIiitH~~~~~~~~d~ 184 (197)
T cd03278 167 TQFIVITHRKGTMEAADR 184 (197)
T ss_pred CEEEEEECCHHHHhhcce
Confidence 889999999987766655
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.8e-15 Score=152.39 Aligned_cols=151 Identities=23% Similarity=0.240 Sum_probs=120.0
Q ss_pred CccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh--------------hhcCccccccccccc----------------
Q 002722 648 DCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------AQVGSFVPCDRASIS---------------- 697 (888)
Q Consensus 648 ~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~--------------a~~g~~vp~~~~~~~---------------- 697 (888)
+++|......+++|.|++||||||++++|+++... +.-|.|+|....+++
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 45566555579999999999999999999987533 234556665443322
Q ss_pred ------------HHHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHH
Q 002722 698 ------------VRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHL 764 (888)
Q Consensus 698 ------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l 764 (888)
.+|.+..-+|...-+.+..+++|++.+|...|-+ ..+.|.|+|||||.+.+|..-...+ .-.+|.|
T Consensus 96 NL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~Ei-lpylERL 174 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREI-LPYLERL 174 (352)
T ss_pred chhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHH-HHHHHHH
Confidence 3667778888888889999999977666655555 4799999999999999999888888 7788999
Q ss_pred HhcCCCeEEEEecCh-hHHHHhhhccccccccccccEeEEEEEEE
Q 002722 765 VEEIRAPTLFATHFH-ELTALAHENANEFNTKQMVGVANYHVSAH 808 (888)
Q Consensus 765 ~~~~~~~~l~~TH~~-~l~~~~~~~~~~~~~~~~~~v~~~~~~~~ 808 (888)
.++.+.+++++||-+ |++.++++ +..+.++++.+.
T Consensus 175 ~~e~~IPIlYVSHS~~Ev~RLAd~---------vV~le~GkV~A~ 210 (352)
T COG4148 175 RDEINIPILYVSHSLDEVLRLADR---------VVVLENGKVKAS 210 (352)
T ss_pred HHhcCCCEEEEecCHHHHHhhhhe---------EEEecCCeEEec
Confidence 988899999999995 67789998 777888888664
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=7e-15 Score=155.69 Aligned_cols=153 Identities=17% Similarity=0.085 Sum_probs=111.8
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh--h-hc-C-------------------------cccccccc
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--A-QV-G-------------------------SFVPCDRA 694 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~--a-~~-g-------------------------~~vp~~~~ 694 (888)
.+.++++|++.+|++++|+|.+||||||+.++|.++.-- + .. | +++|++..
T Consensus 19 ~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~ 98 (316)
T COG0444 19 KAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPM 98 (316)
T ss_pred EEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCch
Confidence 456799999999999999999999999999998765421 1 11 1 12333221
Q ss_pred -ccc---------------------------HHHHHHHhcCCch---hhhhccchhHHHHHHHHHHHH-hCCCCcEEEEe
Q 002722 695 -SIS---------------------------VRDCIFARVGAGD---CQLRGVSTFMQEMLETASILK-GATDRSLIIID 742 (888)
Q Consensus 695 -~~~---------------------------~~d~i~~~~~~~d---~~~~~~s~f~~e~~~~~~il~-~~~~~slvllD 742 (888)
.+. ....++..+|..+ .+......||++|+|...|.. .+.+|+|+|.|
T Consensus 99 ~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIAD 178 (316)
T COG0444 99 TSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIAD 178 (316)
T ss_pred hhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeC
Confidence 000 1123455566544 345556788999988866654 47899999999
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEE
Q 002722 743 ELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 743 Ep~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
|||++||......| ..+++.+.++.|+++||+|||+.++ ++||+ +..+..+.+.
T Consensus 179 EPTTALDvt~QaqI-l~Ll~~l~~e~~~aiilITHDl~vva~~aDr---------i~VMYaG~iV 233 (316)
T COG0444 179 EPTTALDVTVQAQI-LDLLKELQREKGTALILITHDLGVVAEIADR---------VAVMYAGRIV 233 (316)
T ss_pred CCcchhhHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhcce---------EEEEECcEEE
Confidence 99999999999998 7788888877899999999999866 68887 5555556553
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.7e-15 Score=178.07 Aligned_cols=155 Identities=16% Similarity=0.185 Sum_probs=108.9
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh------------------hcCcccccccc---cccH---
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA------------------QVGSFVPCDRA---SISV--- 698 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a------------------~~g~~vp~~~~---~~~~--- 698 (888)
+.+.+++++++.+|++++|+|||||||||||+++++..... +.-+|||++.. .+++
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 160 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRET 160 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHH
Confidence 35778999999999999999999999999999998764221 11135554321 1111
Q ss_pred ---------------------HHHHHHhcCCchhhh-----hccchhHHHHHHHHH-HHHhCCCCcEEEEeCCCCCCChh
Q 002722 699 ---------------------RDCIFARVGAGDCQL-----RGVSTFMQEMLETAS-ILKGATDRSLIIIDELGRGTSTY 751 (888)
Q Consensus 699 ---------------------~d~i~~~~~~~d~~~-----~~~s~f~~e~~~~~~-il~~~~~~slvllDEp~~gtd~~ 751 (888)
++.++..+|+.+... .....+|+++++... +...+.+|+++|||||++|+|+.
T Consensus 161 l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~ 240 (659)
T PLN03211 161 LVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDAT 240 (659)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHH
Confidence 223444555543221 123457766655544 44458899999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEecChh--HHHHhhhccccccccccccEeEEEEEEE
Q 002722 752 DGFGLAWAICEHLVEEIRAPTLFATHFHE--LTALAHENANEFNTKQMVGVANYHVSAH 808 (888)
Q Consensus 752 ~~~~i~~~il~~l~~~~~~~~l~~TH~~~--l~~~~~~~~~~~~~~~~~~v~~~~~~~~ 808 (888)
....+ ..+++.+++ .|.++|++||+++ +.+++|+ +-.+.++++.+.
T Consensus 241 ~~~~l-~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~---------iilL~~G~iv~~ 288 (659)
T PLN03211 241 AAYRL-VLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDS---------VLVLSEGRCLFF 288 (659)
T ss_pred HHHHH-HHHHHHHHh-CCCEEEEEecCCCHHHHHhhce---------EEEecCCcEEEE
Confidence 88888 666777776 5899999999974 5678887 666777776654
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.2e-15 Score=175.23 Aligned_cols=139 Identities=17% Similarity=0.133 Sum_probs=100.4
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh----------hcCcccccccc-----cccH---------
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA----------QVGSFVPCDRA-----SISV--------- 698 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a----------~~g~~vp~~~~-----~~~~--------- 698 (888)
..+.++++|++.+|++++|+||||||||||||+++++.... .+ .|+|+... ..++
T Consensus 332 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i-~~~~q~~~~~~~~~~t~~~~~~~~~~ 410 (530)
T PRK15064 332 GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANI-GYYAQDHAYDFENDLTLFDWMSQWRQ 410 (530)
T ss_pred ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEE-EEEcccccccCCCCCcHHHHHHHhcc
Confidence 45788999999999999999999999999999998764211 12 24444321 1112
Q ss_pred -------HHHHHHhcCCc-hhhhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCC
Q 002722 699 -------RDCIFARVGAG-DCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIR 769 (888)
Q Consensus 699 -------~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~~-~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~ 769 (888)
+..++.++|.. +......+++|+++++...+++. +.+|+++||||||+|+|+.....+ ..++..+ +
T Consensus 411 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l-~~~l~~~----~ 485 (530)
T PRK15064 411 EGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESL-NMALEKY----E 485 (530)
T ss_pred CCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH-HHHHHHC----C
Confidence 22345566663 45566778888888777666554 789999999999999999887777 3343332 4
Q ss_pred CeEEEEecChhHH-HHhhh
Q 002722 770 APTLFATHFHELT-ALAHE 787 (888)
Q Consensus 770 ~~~l~~TH~~~l~-~~~~~ 787 (888)
.++|++||+.++. .++++
T Consensus 486 ~tvi~vsHd~~~~~~~~d~ 504 (530)
T PRK15064 486 GTLIFVSHDREFVSSLATR 504 (530)
T ss_pred CEEEEEeCCHHHHHHhCCE
Confidence 5899999998766 46666
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.6e-15 Score=175.63 Aligned_cols=138 Identities=15% Similarity=0.056 Sum_probs=95.5
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh----------hcCcccccccc---cccHHHHH-------
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA----------QVGSFVPCDRA---SISVRDCI------- 702 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a----------~~g~~vp~~~~---~~~~~d~i------- 702 (888)
..+.++++|++.+|++++|+||||||||||||+++++.... ++ .|+|.... .+++.+.+
T Consensus 20 ~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i-~~v~Q~~~~~~~~tv~e~l~~~~~~~ 98 (556)
T PRK11819 20 KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKV-GYLPQEPQLDPEKTVRENVEEGVAEV 98 (556)
T ss_pred CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEE-EEEecCCCCCCCCcHHHHHHHhhHHH
Confidence 35677999999999999999999999999999998864321 12 25554431 12222222
Q ss_pred --------------------------------------------------HHhcCCchhhhhccchhHHHHHHHHHHHH-
Q 002722 703 --------------------------------------------------FARVGAGDCQLRGVSTFMQEMLETASILK- 731 (888)
Q Consensus 703 --------------------------------------------------~~~~~~~d~~~~~~s~f~~e~~~~~~il~- 731 (888)
+.++|.. ......+.+|+++++...+.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~LSgGqkqrv~la~a 177 (556)
T PRK11819 99 KAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP-PWDAKVTKLSGGERRRVALCRL 177 (556)
T ss_pred HHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC-cccCchhhcCHHHHHHHHHHHH
Confidence 1222221 134455778888877655555
Q ss_pred hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 732 GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 732 ~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
.+.+|+++||||||+|+|+.....+ ..++..+ +.++|++||+.++. .++++
T Consensus 178 l~~~p~vlLLDEPt~~LD~~~~~~l-~~~L~~~----~~tviiisHd~~~~~~~~d~ 229 (556)
T PRK11819 178 LLEKPDMLLLDEPTNHLDAESVAWL-EQFLHDY----PGTVVAVTHDRYFLDNVAGW 229 (556)
T ss_pred HhCCCCEEEEcCCCCcCChHHHHHH-HHHHHhC----CCeEEEEeCCHHHHHhhcCe
Confidence 4789999999999999999877766 4444433 35899999998766 46665
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.7e-15 Score=162.88 Aligned_cols=155 Identities=22% Similarity=0.195 Sum_probs=117.2
Q ss_pred ccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh----------------------hcC------ccccccc---
Q 002722 645 IPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA----------------------QVG------SFVPCDR--- 693 (888)
Q Consensus 645 v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a----------------------~~g------~~vp~~~--- 693 (888)
-.++|+|++.+|++++|.|.||||||||++++.++.-+. -+| ..||.-.
T Consensus 19 And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~E 98 (501)
T COG3845 19 ANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAE 98 (501)
T ss_pred ecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhh
Confidence 346799999999999999999999999999987653211 111 1122100
Q ss_pred -----------ccc------cHHHHHHHhcCCchhhhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHH
Q 002722 694 -----------ASI------SVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDGFG 755 (888)
Q Consensus 694 -----------~~~------~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~slvllDEp~~gtd~~~~~~ 755 (888)
..+ .-+..+..++|..=+.....+.++++++|...|++. ..++.++||||||+-|.|.+...
T Consensus 99 NiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~ 178 (501)
T COG3845 99 NIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADE 178 (501)
T ss_pred hhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 000 113356677777777777888899999998888876 67899999999999999999999
Q ss_pred HHHHHHHHHHhcCCCeEEEEecCh-hHHHHhhhccccccccccccEeEEEEEEEEE
Q 002722 756 LAWAICEHLVEEIRAPTLFATHFH-ELTALAHENANEFNTKQMVGVANYHVSAHID 810 (888)
Q Consensus 756 i~~~il~~l~~~~~~~~l~~TH~~-~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 810 (888)
+ ..+++.+.+ .|+++||+||-. |..++||+ ...++.+++.-..+
T Consensus 179 l-f~~l~~l~~-~G~tIi~ITHKL~Ev~~iaDr---------vTVLR~Gkvvgt~~ 223 (501)
T COG3845 179 L-FEILRRLAA-EGKTIIFITHKLKEVMAIADR---------VTVLRRGKVVGTVD 223 (501)
T ss_pred H-HHHHHHHHH-CCCEEEEEeccHHHHHHhhCe---------eEEEeCCeEEeeec
Confidence 9 678888887 799999999985 66688998 66677776654443
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-14 Score=151.00 Aligned_cols=151 Identities=17% Similarity=0.152 Sum_probs=110.6
Q ss_pred cCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh------------------------hcCcc-------ccccc-
Q 002722 646 PNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA------------------------QVGSF-------VPCDR- 693 (888)
Q Consensus 646 ~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a------------------------~~g~~-------vp~~~- 693 (888)
.++++|++..|++++|.|-+|||||||+|++..+.-+. +--+. .|...
T Consensus 44 v~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtV 123 (386)
T COG4175 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTV 123 (386)
T ss_pred eccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhH
Confidence 47899999999999999999999999999986432110 00111 12111
Q ss_pred ---c-------------cccHHHHHHHhcCCchhhhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHH
Q 002722 694 ---A-------------SISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDGFGL 756 (888)
Q Consensus 694 ---~-------------~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~slvllDEp~~gtd~~~~~~i 756 (888)
. +-......+..+|+.+...+....+|++|+|..-+.++ +++|+++|||||++.|||.-+..+
T Consensus 124 l~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~m 203 (386)
T COG4175 124 LENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEM 203 (386)
T ss_pred hhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHH
Confidence 0 01112346778898888888889999999988666654 899999999999999999988888
Q ss_pred HHHHHHHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEE
Q 002722 757 AWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 757 ~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
-..+++ |..+.+.|++|+|||++.+ .+-++ +.-++.+++.
T Consensus 204 QdeLl~-Lq~~l~KTIvFitHDLdEAlriG~r---------IaimkdG~iv 244 (386)
T COG4175 204 QDELLE-LQAKLKKTIVFITHDLDEALRIGDR---------IAIMKDGEIV 244 (386)
T ss_pred HHHHHH-HHHHhCCeEEEEecCHHHHHhccce---------EEEecCCeEE
Confidence 555555 4444789999999998766 56666 5555666654
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.6e-15 Score=166.01 Aligned_cols=153 Identities=18% Similarity=0.113 Sum_probs=115.2
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh----------------------------hcCccccccccc
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA----------------------------QVGSFVPCDRAS 695 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a----------------------------~~g~~vp~~~~~ 695 (888)
.+.++++|++.+|++++|+|.+||||||+.+++.++.-.. ..-+++|++...
T Consensus 23 ~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~ 102 (539)
T COG1123 23 PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMT 102 (539)
T ss_pred eeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchh
Confidence 4667999999999999999999999999999986542110 111234443211
Q ss_pred -cc--------------------------HHHHHHHhcCCchhhhh--ccchhHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 002722 696 -IS--------------------------VRDCIFARVGAGDCQLR--GVSTFMQEMLETASILKG-ATDRSLIIIDELG 745 (888)
Q Consensus 696 -~~--------------------------~~d~i~~~~~~~d~~~~--~~s~f~~e~~~~~~il~~-~~~~slvllDEp~ 745 (888)
+. ....++.++|..+.... ....||++|+|.+.|..+ +.+|+|+|+||||
T Consensus 103 slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPT 182 (539)
T COG1123 103 SLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPT 182 (539)
T ss_pred hcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCc
Confidence 10 12246777888776665 677899999888776654 8899999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEEE
Q 002722 746 RGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 746 ~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
++||+.....| ..+++.+.++.|.++||+|||+++. ++||+ +..+.++.+.
T Consensus 183 TaLDvt~q~qI-L~llk~l~~e~g~a~l~ITHDl~Vva~~aDr---------v~Vm~~G~iV 234 (539)
T COG1123 183 TALDVTTQAQI-LDLLKDLQRELGMAVLFITHDLGVVAELADR---------VVVMYKGEIV 234 (539)
T ss_pred cccCHHHHHHH-HHHHHHHHHHcCcEEEEEcCCHHHHHHhcCe---------EEEEECCEEE
Confidence 99999999888 6677777776899999999999987 58887 5556666654
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-14 Score=147.21 Aligned_cols=155 Identities=16% Similarity=0.065 Sum_probs=110.7
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh---------------hcCcccccccccc-----------
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA---------------QVGSFVPCDRASI----------- 696 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a---------------~~g~~vp~~~~~~----------- 696 (888)
..+.+|++|++.+|+.++|+|+||||||||||.++++..+. -.+.|-|.-...-
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~ 119 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGL 119 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCc
Confidence 36778999999999999999999999999999999865332 1223334322110
Q ss_pred ------cHHHHHHHhcCCchhhhhccchhHHHHH-HHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCC
Q 002722 697 ------SVRDCIFARVGAGDCQLRGVSTFMQEML-ETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIR 769 (888)
Q Consensus 697 ------~~~d~i~~~~~~~d~~~~~~s~f~~e~~-~~~~il~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~ 769 (888)
..++.|..--.+.+-+..+..++|.+|. |++..+....+|+++|+||..+--|+.=...- ..-+..+.+ .+
T Consensus 120 ~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~-~~rl~e~~~-~~ 197 (249)
T COG1134 120 TRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKC-LERLNELVE-KN 197 (249)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHH-HHHHHHHHH-cC
Confidence 1123333333456677888889988885 56777777889999999999999998766655 344455544 47
Q ss_pred CeEEEEecChhHH-HHhhhccccccccccccEeEEEEEEE
Q 002722 770 APTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSAH 808 (888)
Q Consensus 770 ~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~~~ 808 (888)
.++|++||+++.. ++|++ ..-+..+++...
T Consensus 198 ~tiv~VSHd~~~I~~~Cd~---------~i~l~~G~i~~~ 228 (249)
T COG1134 198 KTIVLVSHDLGAIKQYCDR---------AIWLEHGQIRME 228 (249)
T ss_pred CEEEEEECCHHHHHHhcCe---------eEEEeCCEEEEc
Confidence 9999999998765 68887 555666666543
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-14 Score=172.38 Aligned_cols=140 Identities=19% Similarity=0.163 Sum_probs=103.0
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhcCc----------------------------------c
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGS----------------------------------F 688 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~g~----------------------------------~ 688 (888)
.|+..+++ .+.+|++++|+||||||||||||+++++.... .|. +
T Consensus 87 ~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~-~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~ 164 (590)
T PRK13409 87 GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPN-LGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVH 164 (590)
T ss_pred ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCC-CccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceee
Confidence 47888888 78999999999999999999999998753211 111 1
Q ss_pred ccccccc------------------ccHHHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCC
Q 002722 689 VPCDRAS------------------ISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTS 749 (888)
Q Consensus 689 vp~~~~~------------------~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd 749 (888)
.|+.... ...++.++..++..+......+.+|+++++...+++ .+.+|+++|||||++|+|
T Consensus 165 ~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD 244 (590)
T PRK13409 165 KPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLD 244 (590)
T ss_pred cccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCC
Confidence 1110000 011234566778777777788899988777666555 478999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 750 TYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 750 ~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
+.....+ ..++..+.+ |.++|++||+.+.. .++++
T Consensus 245 ~~~~~~l-~~~i~~l~~--g~tvIivsHd~~~l~~~~D~ 280 (590)
T PRK13409 245 IRQRLNV-ARLIRELAE--GKYVLVVEHDLAVLDYLADN 280 (590)
T ss_pred HHHHHHH-HHHHHHHHC--CCEEEEEeCCHHHHHHhCCE
Confidence 9988888 566677764 89999999998765 45554
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.7e-14 Score=165.42 Aligned_cols=157 Identities=17% Similarity=0.083 Sum_probs=103.5
Q ss_pred EEEEcCcCceeeeccCcccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh--------------------hc
Q 002722 626 IILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA--------------------QV 685 (888)
Q Consensus 626 l~i~~~rhp~~~~~~~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a--------------------~~ 685 (888)
+.+++....+ ..+...+.++++|++++|+.++|+||||||||||++.+++..-.. +.
T Consensus 317 i~~~~v~~~y---~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~ 393 (544)
T TIGR01842 317 LSVENVTIVP---PGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKH 393 (544)
T ss_pred EEEEEEEEEc---CCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhh
Confidence 6666543322 112246889999999999999999999999999999997653211 11
Q ss_pred Ccccccccccc--cHHHHH------------------------HHhc--CCchhhhhccchhHHHHHHHHHHH-HhCCCC
Q 002722 686 GSFVPCDRASI--SVRDCI------------------------FARV--GAGDCQLRGVSTFMQEMLETASIL-KGATDR 736 (888)
Q Consensus 686 g~~vp~~~~~~--~~~d~i------------------------~~~~--~~~d~~~~~~s~f~~e~~~~~~il-~~~~~~ 736 (888)
-.++|++..-+ ++.+.+ +.++ |....+..+...+|++++|...+. ....+|
T Consensus 394 i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~ 473 (544)
T TIGR01842 394 IGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDP 473 (544)
T ss_pred eEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCC
Confidence 23455543111 111211 1222 222223333456776666554444 457899
Q ss_pred cEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 737 SLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 737 slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
+++||||||+|+|+.....+ ...+..+.. .++++|++||..+..+.+|+
T Consensus 474 ~ililDEpts~LD~~~~~~i-~~~l~~~~~-~~~tvi~ith~~~~~~~~d~ 522 (544)
T TIGR01842 474 KLVVLDEPNSNLDEEGEQAL-ANAIKALKA-RGITVVVITHRPSLLGCVDK 522 (544)
T ss_pred CEEEEeCCccccCHHHHHHH-HHHHHHHhh-CCCEEEEEeCCHHHHHhCCE
Confidence 99999999999999988887 444555543 47899999999988777776
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-14 Score=175.37 Aligned_cols=138 Identities=16% Similarity=0.176 Sum_probs=92.0
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhc-----C----ccccccc---ccccH------------
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQV-----G----SFVPCDR---ASISV------------ 698 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~-----g----~~vp~~~---~~~~~------------ 698 (888)
..+.++++|++.+|++++|+||||||||||||+++++...... | .++|... ....+
T Consensus 16 ~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~~~~~ 95 (635)
T PRK11147 16 APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQA 95 (635)
T ss_pred ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhhHHHH
Confidence 4577899999999999999999999999999999886432110 1 1222110 00000
Q ss_pred -------------------------------------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCC
Q 002722 699 -------------------------------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GAT 734 (888)
Q Consensus 699 -------------------------------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~ 734 (888)
+..++..+|.. .....+++|+++++...+.+ .+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~~~~~~LSgGekqRv~LAraL~~ 173 (635)
T PRK11147 96 EYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD--PDAALSSLSGGWLRKAALGRALVS 173 (635)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--CCCchhhcCHHHHHHHHHHHHHhc
Confidence 11122233332 13456788888777665555 478
Q ss_pred CCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 735 DRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 735 ~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
+|+++||||||+|+|+.....+ ..+ |.+ .+.++|++||+.++. .++++
T Consensus 174 ~P~lLLLDEPt~~LD~~~~~~L-~~~---L~~-~~~tvlivsHd~~~l~~~~d~ 222 (635)
T PRK11147 174 NPDVLLLDEPTNHLDIETIEWL-EGF---LKT-FQGSIIFISHDRSFIRNMATR 222 (635)
T ss_pred CCCEEEEcCCCCccCHHHHHHH-HHH---HHh-CCCEEEEEeCCHHHHHHhcCe
Confidence 9999999999999999877666 333 333 346899999998765 46665
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.2e-14 Score=134.97 Aligned_cols=155 Identities=17% Similarity=0.150 Sum_probs=111.2
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhcC----------ccccccc-------------------
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVG----------SFVPCDR------------------- 693 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~g----------~~vp~~~------------------- 693 (888)
....-|++|+...|+.+++.||+|+|||||+|.+.++....... +-.|.+.
T Consensus 15 ~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lw 94 (242)
T COG4161 15 HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLW 94 (242)
T ss_pred chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccC
Confidence 34556889998999999999999999999999986653221100 0011111
Q ss_pred ----------------ccc------cHHHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCCh
Q 002722 694 ----------------ASI------SVRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTST 750 (888)
Q Consensus 694 ----------------~~~------~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~ 750 (888)
..+ .-...++.|+...+..++..-.++++.++...|.+ .+.+|.++|+||||+.+||
T Consensus 95 phltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaaldp 174 (242)
T COG4161 95 PHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDP 174 (242)
T ss_pred chhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccCH
Confidence 000 01124667777777666666667777776655555 4789999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCeEEEEecChhHHH-HhhhccccccccccccEeEEEEEEE
Q 002722 751 YDGFGLAWAICEHLVEEIRAPTLFATHFHELTA-LAHENANEFNTKQMVGVANYHVSAH 808 (888)
Q Consensus 751 ~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~-~~~~~~~~~~~~~~~~v~~~~~~~~ 808 (888)
.-...+ ..|++.+.+ .|.+-+++||..++++ .+.+ +.-+.++|+..+
T Consensus 175 eitaqv-v~iikel~~-tgitqvivthev~va~k~as~---------vvyme~g~ive~ 222 (242)
T COG4161 175 EITAQI-VSIIKELAE-TGITQVIVTHEVEVARKTASR---------VVYMENGHIVEQ 222 (242)
T ss_pred HHHHHH-HHHHHHHHh-cCceEEEEEeehhHHHhhhhh---------eEeeecCeeEee
Confidence 888777 778899987 7999999999999885 5555 556777777544
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-13 Score=156.61 Aligned_cols=206 Identities=16% Similarity=0.086 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHhcCCCCCCCCccCCCCCccEEEEcCcCceeeeccCcccccCCccccCCCCeEEEEEecC
Q 002722 586 FKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPN 665 (888)
Q Consensus 586 l~~~~~~ia~lD~l~s~A~~a~~~~~~~~rP~~~~~~~~~l~i~~~rhp~~~~~~~~~~v~n~~~l~~~~~~~~~itGpN 665 (888)
+....+-.|-.|.+.+|-.--......-.++..... ..+++. ..|--+....+ +.++++++|++.+|+.++|+|||
T Consensus 281 fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~--~~~ei~-~~~l~~~y~~g-~~~l~~l~~t~~~g~~talvG~S 356 (559)
T COG4988 281 FHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANE--PPIEIS-LENLSFRYPDG-KPALSDLNLTIKAGQLTALVGAS 356 (559)
T ss_pred HHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccC--CCceee-ecceEEecCCC-CcccCCceeEecCCcEEEEECCC
Confidence 344445578888888875321110000111122211 124443 22333332222 38999999999999999999999
Q ss_pred CCChhHHHhhhhHHHhhh--------------------hcCcccccccccc-----------------cHHHHHHHhcCC
Q 002722 666 MGGKSTFIRQVGVNILMA--------------------QVGSFVPCDRASI-----------------SVRDCIFARVGA 708 (888)
Q Consensus 666 g~GKSTllr~i~~~~~~a--------------------~~g~~vp~~~~~~-----------------~~~d~i~~~~~~ 708 (888)
||||||++..+++..-.. +--++||..+.-+ .-+.....+.|+
T Consensus 357 GaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l 436 (559)
T COG4988 357 GAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGL 436 (559)
T ss_pred CCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcH
Confidence 999999999998653210 1113444433110 011122333333
Q ss_pred ----------chhhhhccchhHHHH-HHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEec
Q 002722 709 ----------GDCQLRGVSTFMQEM-LETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATH 777 (888)
Q Consensus 709 ----------~d~~~~~~s~f~~e~-~~~~~il~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH 777 (888)
.-.+..+-+.+|++. +|++.+.....+++++|+||||+++|...-..| ...+..+.+ +.++|++||
T Consensus 437 ~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i-~~~l~~l~~--~ktvl~itH 513 (559)
T COG4988 437 LEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQII-LQALQELAK--QKTVLVITH 513 (559)
T ss_pred HHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHH-HHHHHHHHh--CCeEEEEEc
Confidence 333444445566555 555555556788999999999999999777777 555566665 689999999
Q ss_pred ChhHHHHhhhccccccccccccEeEEEEEE
Q 002722 778 FHELTALAHENANEFNTKQMVGVANYHVSA 807 (888)
Q Consensus 778 ~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (888)
.+....-+|+ +..+.++.+..
T Consensus 514 rl~~~~~~D~---------I~vld~G~l~~ 534 (559)
T COG4988 514 RLEDAADADR---------IVVLDNGRLVE 534 (559)
T ss_pred ChHHHhcCCE---------EEEecCCceec
Confidence 9998888887 66666766654
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.6e-14 Score=171.74 Aligned_cols=140 Identities=15% Similarity=0.095 Sum_probs=100.1
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhh----c-----Cccccccc----ccccHH----------
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ----V-----GSFVPCDR----ASISVR---------- 699 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~----~-----g~~vp~~~----~~~~~~---------- 699 (888)
..+.++++|++.+|++++|+||||||||||||+++++..+.. . -.|+|+.. ..+++.
T Consensus 337 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~ 416 (556)
T PRK11819 337 RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDII 416 (556)
T ss_pred eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCCCCCHHHHHHhhcccc
Confidence 468899999999999999999999999999999987642211 0 12455442 111222
Q ss_pred ---------HHHHHhcCCch-hhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcC
Q 002722 700 ---------DCIFARVGAGD-CQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEI 768 (888)
Q Consensus 700 ---------d~i~~~~~~~d-~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~ 768 (888)
..++.++|..+ ......+++|+++++...+++ .+.+|+++||||||+|+|+.....+ +.++..+ .
T Consensus 417 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l-~~~l~~~---~ 492 (556)
T PRK11819 417 KVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRAL-EEALLEF---P 492 (556)
T ss_pred cccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH-HHHHHhC---C
Confidence 23455566643 456667888888877766555 4789999999999999999888887 4454443 2
Q ss_pred CCeEEEEecChhHH-HHhhh
Q 002722 769 RAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 769 ~~~~l~~TH~~~l~-~~~~~ 787 (888)
+ ++|++||+.++. .++++
T Consensus 493 ~-tvi~vtHd~~~~~~~~d~ 511 (556)
T PRK11819 493 G-CAVVISHDRWFLDRIATH 511 (556)
T ss_pred C-eEEEEECCHHHHHHhCCE
Confidence 4 789999998765 46665
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.5e-14 Score=171.94 Aligned_cols=139 Identities=15% Similarity=0.126 Sum_probs=99.9
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh----------hcCcccccccc----cccH----------
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA----------QVGSFVPCDRA----SISV---------- 698 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a----------~~g~~vp~~~~----~~~~---------- 698 (888)
..+.++++|++.+|++++|+||||||||||||+++++.... .+ .|+|+... ..++
T Consensus 335 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i-~~v~q~~~~~~~~~tv~e~l~~~~~~ 413 (552)
T TIGR03719 335 KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKL-AYVDQSRDALDPNKTVWEEISGGLDI 413 (552)
T ss_pred eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEE-EEEeCCccccCCCCcHHHHHHhhccc
Confidence 46889999999999999999999999999999998764211 11 24444321 1111
Q ss_pred ---------HHHHHHhcCCch-hhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhc
Q 002722 699 ---------RDCIFARVGAGD-CQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEE 767 (888)
Q Consensus 699 ---------~d~i~~~~~~~d-~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~ 767 (888)
...++.++|..+ ......+++|+++++...+++ .+.+|+++||||||+|+|+.....+ ..++..+
T Consensus 414 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l-~~~l~~~--- 489 (552)
T TIGR03719 414 IQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRAL-EEALLEF--- 489 (552)
T ss_pred cccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHC---
Confidence 123456667643 346667889888877665555 4789999999999999999888877 4444443
Q ss_pred CCCeEEEEecChhHH-HHhhh
Q 002722 768 IRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 768 ~~~~~l~~TH~~~l~-~~~~~ 787 (888)
+.++|++||+.++. .++++
T Consensus 490 -~~~viivsHd~~~~~~~~d~ 509 (552)
T TIGR03719 490 -AGCAVVISHDRWFLDRIATH 509 (552)
T ss_pred -CCeEEEEeCCHHHHHHhCCE
Confidence 23799999998765 46665
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-14 Score=175.71 Aligned_cols=139 Identities=15% Similarity=0.104 Sum_probs=97.6
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh----------hcCcccccccc----cccHHH--------
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA----------QVGSFVPCDRA----SISVRD-------- 700 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a----------~~g~~vp~~~~----~~~~~d-------- 700 (888)
..+.++++|++.+|++++|+||||||||||||+++++..+. .+| |+|+... ..++.+
T Consensus 332 ~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~-y~~q~~~~l~~~~tv~e~l~~~~~~ 410 (635)
T PRK11147 332 KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVA-YFDQHRAELDPEKTVMDNLAEGKQE 410 (635)
T ss_pred eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEE-EEeCcccccCCCCCHHHHHHhhccc
Confidence 46889999999999999999999999999999998764211 122 4443211 112222
Q ss_pred -----------HHHHhcCCc-hhhhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhc
Q 002722 701 -----------CIFARVGAG-DCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEE 767 (888)
Q Consensus 701 -----------~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~~-~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~ 767 (888)
.++.+++.. +......+++|+++++...+++. +.+|.++||||||+|+|+.....+ ..++ .+
T Consensus 411 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l-~~~l---~~- 485 (635)
T PRK11147 411 VMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELL-EELL---DS- 485 (635)
T ss_pred ccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH-HHHH---Hh-
Confidence 234445553 34556677888888776665554 689999999999999999876655 3333 33
Q ss_pred CCCeEEEEecChhHH-HHhhh
Q 002722 768 IRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 768 ~~~~~l~~TH~~~l~-~~~~~ 787 (888)
.+.++|++|||.++. .++++
T Consensus 486 ~~~tvi~vSHd~~~~~~~~d~ 506 (635)
T PRK11147 486 YQGTVLLVSHDRQFVDNTVTE 506 (635)
T ss_pred CCCeEEEEECCHHHHHHhcCE
Confidence 356899999998765 57776
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.9e-14 Score=171.10 Aligned_cols=139 Identities=15% Similarity=0.020 Sum_probs=94.1
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhh---------cCcccccccc---cccHHHHHH-------
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ---------VGSFVPCDRA---SISVRDCIF------- 703 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~---------~g~~vp~~~~---~~~~~d~i~------- 703 (888)
..+.++++|++.+|++++|+||||||||||||+++++..... .-.|+|.... .+++.+.+.
T Consensus 18 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~ 97 (552)
T TIGR03719 18 KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIK 97 (552)
T ss_pred CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCCCcHHHHHHHhhHHHH
Confidence 357789999999999999999999999999999987642211 0124554431 122222221
Q ss_pred --------------------------------------------------HhcCCchhhhhccchhHHHHHHHHHHHH-h
Q 002722 704 --------------------------------------------------ARVGAGDCQLRGVSTFMQEMLETASILK-G 732 (888)
Q Consensus 704 --------------------------------------------------~~~~~~d~~~~~~s~f~~e~~~~~~il~-~ 732 (888)
..+|.. ......+++|+++++...+++ .
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~LSgGqkqrv~la~al 176 (552)
T TIGR03719 98 DALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP-PWDADVTKLSGGERRRVALCRLL 176 (552)
T ss_pred HHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC-cccCchhhcCHHHHHHHHHHHHH
Confidence 111111 123445678887777665555 4
Q ss_pred CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHH-Hhhh
Q 002722 733 ATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTA-LAHE 787 (888)
Q Consensus 733 ~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~-~~~~ 787 (888)
+.+|+++||||||+|+|+.....+ ..++ .+ .+.++|++||+.++.. ++++
T Consensus 177 ~~~p~lLLLDEPt~~LD~~~~~~l-~~~L---~~-~~~tvIiisHd~~~~~~~~d~ 227 (552)
T TIGR03719 177 LSKPDMLLLDEPTNHLDAESVAWL-EQHL---QE-YPGTVVAVTHDRYFLDNVAGW 227 (552)
T ss_pred hcCCCEEEEcCCCCCCChHHHHHH-HHHH---Hh-CCCeEEEEeCCHHHHHhhcCe
Confidence 789999999999999999877766 3333 33 3468999999987664 5665
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-14 Score=159.56 Aligned_cols=136 Identities=13% Similarity=0.101 Sum_probs=95.0
Q ss_pred EEecCCCChhHHHhhhhHHHhhh-------------------hcCcccccccc---cccH--------------------
Q 002722 661 ITGPNMGGKSTFIRQVGVNILMA-------------------QVGSFVPCDRA---SISV-------------------- 698 (888)
Q Consensus 661 itGpNg~GKSTllr~i~~~~~~a-------------------~~g~~vp~~~~---~~~~-------------------- 698 (888)
|+||||||||||||+++++.... ++ .|+|.... ..++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i-~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~ 79 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHI-NMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKP 79 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCE-EEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHH
Confidence 68999999999999998764211 11 23443321 1111
Q ss_pred -HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEe
Q 002722 699 -RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFAT 776 (888)
Q Consensus 699 -~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~T 776 (888)
++.++..+++.+......+.+|+++++...+.+ .+.+|+++|||||++|+|+.....+ ..++..+.++.|.++|++|
T Consensus 80 ~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l-~~~l~~l~~~~g~tiiivT 158 (325)
T TIGR01187 80 RVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQM-QLELKTIQEQLGITFVFVT 158 (325)
T ss_pred HHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHH-HHHHHHHHHhcCCEEEEEe
Confidence 123455566666666667788888777666555 4789999999999999999988888 5666666653589999999
Q ss_pred cChhH-HHHhhhccccccccccccEeEEEEEE
Q 002722 777 HFHEL-TALAHENANEFNTKQMVGVANYHVSA 807 (888)
Q Consensus 777 H~~~l-~~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (888)
|+.+. ..++++ +..+.++++..
T Consensus 159 Hd~~e~~~~~d~---------i~vl~~G~i~~ 181 (325)
T TIGR01187 159 HDQEEAMTMSDR---------IAIMRKGKIAQ 181 (325)
T ss_pred CCHHHHHHhCCE---------EEEEECCEEEE
Confidence 99765 467887 55566666543
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.9e-14 Score=173.80 Aligned_cols=139 Identities=14% Similarity=0.142 Sum_probs=98.9
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh----------hcCcccccccc-cc---------------
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA----------QVGSFVPCDRA-SI--------------- 696 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a----------~~g~~vp~~~~-~~--------------- 696 (888)
..+.++++|++.+|++++|+||||||||||||+++++..+. .+| |+|+... .+
T Consensus 522 ~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~ig-yv~Q~~~~~l~~~~~~~~~~~~~~~ 600 (718)
T PLN03073 522 PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMA-VFSQHHVDGLDLSSNPLLYMMRCFP 600 (718)
T ss_pred CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEE-EEeccccccCCcchhHHHHHHHhcC
Confidence 35788999999999999999999999999999998764321 122 3333210 00
Q ss_pred ----cHHHHHHHhcCCch-hhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCC
Q 002722 697 ----SVRDCIFARVGAGD-CQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRA 770 (888)
Q Consensus 697 ----~~~d~i~~~~~~~d-~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~ 770 (888)
..+..++.++|..+ ......+.+|+++++...+++ .+.+|.++||||||+|+|+.....+ ++.+.+ .+.
T Consensus 601 ~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l----~~~L~~-~~g 675 (718)
T PLN03073 601 GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEAL----IQGLVL-FQG 675 (718)
T ss_pred CCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH----HHHHHH-cCC
Confidence 01234566677753 456677888888777655554 4789999999999999999877665 333443 234
Q ss_pred eEEEEecChhHHH-Hhhh
Q 002722 771 PTLFATHFHELTA-LAHE 787 (888)
Q Consensus 771 ~~l~~TH~~~l~~-~~~~ 787 (888)
++|++||+.++.. ++++
T Consensus 676 tvIivSHd~~~i~~~~dr 693 (718)
T PLN03073 676 GVLMVSHDEHLISGSVDE 693 (718)
T ss_pred EEEEEECCHHHHHHhCCE
Confidence 8999999987664 6666
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.7e-14 Score=166.58 Aligned_cols=141 Identities=15% Similarity=0.082 Sum_probs=101.3
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHh---------------------hhhcCccccccccc--ccHH
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL---------------------MAQVGSFVPCDRAS--ISVR 699 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~---------------------~a~~g~~vp~~~~~--~~~~ 699 (888)
..+.+++++++.+|+.++|+|+||||||||+|.+.++.. ..|+ .+||++..- -++.
T Consensus 486 ~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~i-g~V~Q~~~Lf~gSI~ 564 (709)
T COG2274 486 PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQV-GYVLQDPFLFSGSIR 564 (709)
T ss_pred cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhhe-eEEcccchhhcCcHH
Confidence 368899999999999999999999999999999876431 2233 366665421 1111
Q ss_pred H------------HHH---Hh-----------cCCchhhhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhh
Q 002722 700 D------------CIF---AR-----------VGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYD 752 (888)
Q Consensus 700 d------------~i~---~~-----------~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~slvllDEp~~gtd~~~ 752 (888)
| .+. .. +|....+..+-+.+|++.+|...++++ ..+|+++||||||+++|+..
T Consensus 565 eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~s 644 (709)
T COG2274 565 ENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPET 644 (709)
T ss_pred HHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhH
Confidence 1 111 11 233334455667788888777665554 78999999999999999987
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 753 GFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 753 ~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
-..+...+ ..+. .|+|+|++||.+...+.+|+
T Consensus 645 E~~I~~~L-~~~~--~~~T~I~IaHRl~ti~~adr 676 (709)
T COG2274 645 EAIILQNL-LQIL--QGRTVIIIAHRLSTIRSADR 676 (709)
T ss_pred HHHHHHHH-HHHh--cCCeEEEEEccchHhhhccE
Confidence 77774444 3343 37999999999999998887
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.6e-14 Score=172.42 Aligned_cols=153 Identities=17% Similarity=0.128 Sum_probs=113.1
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh------------------------hhcCccccccccc---c
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM------------------------AQVGSFVPCDRAS---I 696 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~------------------------a~~g~~vp~~~~~---~ 696 (888)
.+.++++|++.+|++++|+||||||||||+|+++++... .+...|+|.+..- .
T Consensus 22 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~ 101 (648)
T PRK10535 22 EVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHL 101 (648)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCC
Confidence 577899999999999999999999999999999875311 1112344433211 1
Q ss_pred cH---------------------HHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHH
Q 002722 697 SV---------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGF 754 (888)
Q Consensus 697 ~~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~ 754 (888)
+. ...++.++|..+........+|+++++...+.+ .+.+|+++|||||++|+|+....
T Consensus 102 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~ 181 (648)
T PRK10535 102 TAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGE 181 (648)
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHH
Confidence 11 123455566666666677788877777655555 47899999999999999998888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecChhHHHHhhhccccccccccccEeEEEEEE
Q 002722 755 GLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSA 807 (888)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (888)
.+ ..+++.+.+ .|.++|++||++++...+++ .-.+.++++..
T Consensus 182 ~l-~~ll~~l~~-~g~tilivsH~~~~~~~~d~---------i~~l~~G~i~~ 223 (648)
T PRK10535 182 EV-MAILHQLRD-RGHTVIIVTHDPQVAAQAER---------VIEIRDGEIVR 223 (648)
T ss_pred HH-HHHHHHHHh-cCCEEEEECCCHHHHHhCCE---------EEEEECCEEEe
Confidence 88 666777765 58999999999998887777 56677777654
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.8e-14 Score=165.07 Aligned_cols=141 Identities=16% Similarity=0.086 Sum_probs=94.8
Q ss_pred CcccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhh------cC---ccccccccc---ccHHH--------
Q 002722 641 WVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ------VG---SFVPCDRAS---ISVRD-------- 700 (888)
Q Consensus 641 ~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~------~g---~~vp~~~~~---~~~~d-------- 700 (888)
+...+.++++|++.+|+.++|+|+||+|||||||++++...... -+ .+++++... .++.+
T Consensus 14 g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~ 93 (530)
T COG0488 14 GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGE 93 (530)
T ss_pred CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHhhhHH
Confidence 34567789999999999999999999999999999986432110 00 122222211 01111
Q ss_pred -------------------------------------------HHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCC
Q 002722 701 -------------------------------------------CIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDR 736 (888)
Q Consensus 701 -------------------------------------------~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~ 736 (888)
.++..+|..+. ....+++|++.+....+.+ ...+|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LSGG~r~Rv~LA~aL~~~p 172 (530)
T COG0488 94 LRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLSGGWRRRVALARALLEEP 172 (530)
T ss_pred HHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcCHHHHHHHHHHHHHhcCC
Confidence 22333444444 5677889887766655554 47899
Q ss_pred cEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHH-Hhhh
Q 002722 737 SLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTA-LAHE 787 (888)
Q Consensus 737 slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~-~~~~ 787 (888)
+++||||||+.||......+ -++|.+..| ++|++|||..+.+ .|.+
T Consensus 173 DlLLLDEPTNHLD~~~i~WL----e~~L~~~~g-tviiVSHDR~FLd~V~t~ 219 (530)
T COG0488 173 DLLLLDEPTNHLDLESIEWL----EDYLKRYPG-TVIVVSHDRYFLDNVATH 219 (530)
T ss_pred CEEEEcCCCcccCHHHHHHH----HHHHHhCCC-cEEEEeCCHHHHHHHhhh
Confidence 99999999999998654443 456655446 9999999987664 5555
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2e-14 Score=149.12 Aligned_cols=142 Identities=15% Similarity=0.073 Sum_probs=109.6
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhcCccccc--------ccccccHHHHHHHhcCCch-hhhh
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPC--------DRASISVRDCIFARVGAGD-CQLR 714 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~g~~vp~--------~~~~~~~~d~i~~~~~~~d-~~~~ 714 (888)
...++|+|++.+|++++|+|.+||||||+-|++.++.-... |...-. .......+..++..+|... .+.+
T Consensus 27 ~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~-G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~r 105 (268)
T COG4608 27 KAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTS-GEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYR 105 (268)
T ss_pred EEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCC-ceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhc
Confidence 45689999999999999999999999999999987654322 211111 1112233456788888654 5667
Q ss_pred ccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHH-Hhhh
Q 002722 715 GVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTA-LAHE 787 (888)
Q Consensus 715 ~~s~f~~e~~~~~~il~~-~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~-~~~~ 787 (888)
....||++.+|...|.++ +.+|+++++|||++.+|......+ ..++..+.++.|.+.+|+|||..+++ ++++
T Consensus 106 yPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqI-lnLL~dlq~~~~lt~lFIsHDL~vv~~isdr 179 (268)
T COG4608 106 YPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQI-LNLLKDLQEELGLTYLFISHDLSVVRYISDR 179 (268)
T ss_pred CCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHH-HHHHHHHHHHhCCeEEEEEEEHHhhhhhccc
Confidence 778899888777666654 789999999999999999888887 77888888878999999999999886 4554
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3e-13 Score=156.59 Aligned_cols=139 Identities=17% Similarity=0.170 Sum_probs=96.8
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh----------hcCccccccccc-----------------
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA----------QVGSFVPCDRAS----------------- 695 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a----------~~g~~vp~~~~~----------------- 695 (888)
..+..+++|.+..|.-++|+||||+|||||||.+++..-.. ++| |+++....
T Consensus 335 ~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~ig-yf~Q~~~~l~~~~t~~d~l~~~~~~ 413 (530)
T COG0488 335 RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIG-YFDQHRDELDPDKTVLEELSEGFPD 413 (530)
T ss_pred ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEE-EEEehhhhcCccCcHHHHHHhhCcc
Confidence 57889999999999999999999999999999995432111 122 22322211
Q ss_pred --ccHHHHHHHhcCC-chhhhhccchhHHHH-HHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCe
Q 002722 696 --ISVRDCIFARVGA-GDCQLRGVSTFMQEM-LETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAP 771 (888)
Q Consensus 696 --~~~~d~i~~~~~~-~d~~~~~~s~f~~e~-~~~~~il~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~ 771 (888)
...+...+.+++. .+...+...++|++. .++..+.....+|.++||||||+.||.....++.. .|.+ ..-+
T Consensus 414 ~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~----aL~~-f~Gt 488 (530)
T COG0488 414 GDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEE----ALLD-FEGT 488 (530)
T ss_pred ccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHH----HHHh-CCCe
Confidence 1122345666664 445566777888655 45555555678999999999999999987666633 3444 4678
Q ss_pred EEEEecChhHHH-Hhhh
Q 002722 772 TLFATHFHELTA-LAHE 787 (888)
Q Consensus 772 ~l~~TH~~~l~~-~~~~ 787 (888)
+|++|||..+.+ ++.+
T Consensus 489 vl~VSHDr~Fl~~va~~ 505 (530)
T COG0488 489 VLLVSHDRYFLDRVATR 505 (530)
T ss_pred EEEEeCCHHHHHhhcce
Confidence 999999988774 5544
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.1e-13 Score=163.84 Aligned_cols=142 Identities=18% Similarity=0.058 Sum_probs=98.0
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh--------------------hhcCccccccccc--ccHHH
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRAS--ISVRD 700 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~--------------------a~~g~~vp~~~~~--~~~~d 700 (888)
..+.++++|++.+|+.++|+||||||||||+|.++++.-+ .+.-+|+|++..- -++.+
T Consensus 348 ~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~ 427 (588)
T PRK13657 348 RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIED 427 (588)
T ss_pred CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHH
Confidence 4689999999999999999999999999999999765321 1122466655421 11111
Q ss_pred ---------------HHHHhcCCch-----------hhhhccchhHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChhhH
Q 002722 701 ---------------CIFARVGAGD-----------CQLRGVSTFMQEMLE-TASILKGATDRSLIIIDELGRGTSTYDG 753 (888)
Q Consensus 701 ---------------~i~~~~~~~d-----------~~~~~~s~f~~e~~~-~~~il~~~~~~slvllDEp~~gtd~~~~ 753 (888)
..+.+.++.+ .+..+...+|++.+| ++.+...+.+|+++||||||+++|+...
T Consensus 428 Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~ 507 (588)
T PRK13657 428 NIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETE 507 (588)
T ss_pred HHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 1222233222 222333456655555 4555556889999999999999999888
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 754 FGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
..+ ...+..+. .++++|++||+++..+.+|+
T Consensus 508 ~~i-~~~l~~~~--~~~tvIiitHr~~~~~~~D~ 538 (588)
T PRK13657 508 AKV-KAALDELM--KGRTTFIIAHRLSTVRNADR 538 (588)
T ss_pred HHH-HHHHHHHh--cCCEEEEEEecHHHHHhCCE
Confidence 888 44444443 37999999999988888887
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2e-13 Score=151.95 Aligned_cols=154 Identities=18% Similarity=0.132 Sum_probs=114.1
Q ss_pred cccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHH-------------------hhhhcCcccccccccc--cH--
Q 002722 642 VNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI-------------------LMAQVGSFVPCDRASI--SV-- 698 (888)
Q Consensus 642 ~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~-------------------~~a~~g~~vp~~~~~~--~~-- 698 (888)
++.|.++++|++++|+-++|+|+|||||||+||++.... -+.++-.+||++..-+ ++
T Consensus 364 k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~ 443 (591)
T KOG0057|consen 364 KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILY 443 (591)
T ss_pred CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHH
Confidence 346889999999999999999999999999999985321 2345556889876321 11
Q ss_pred -------------HHHHHHhcCCchhhhh---ccch--------hH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhH
Q 002722 699 -------------RDCIFARVGAGDCQLR---GVST--------FM-QEMLETASILKGATDRSLIIIDELGRGTSTYDG 753 (888)
Q Consensus 699 -------------~d~i~~~~~~~d~~~~---~~s~--------f~-~e~~~~~~il~~~~~~slvllDEp~~gtd~~~~ 753 (888)
+-.+..+.|..|.+.+ |.+| +| +|+++++.+.....+++++++||||+.+|...-
T Consensus 444 NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE 523 (591)
T KOG0057|consen 444 NIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETE 523 (591)
T ss_pred HhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhH
Confidence 1234455666665443 2222 23 566666666667899999999999999999988
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhhccccccccccccEeEEEEEE
Q 002722 754 FGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSA 807 (888)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (888)
..+...+.. .. .+.|+|++-|++.+..-+|+ +-.+.|+.+..
T Consensus 524 ~~i~~~i~~-~~--~~rTvI~IvH~l~ll~~~Dk---------I~~l~nG~v~e 565 (591)
T KOG0057|consen 524 REILDMIMD-VM--SGRTVIMIVHRLDLLKDFDK---------IIVLDNGTVKE 565 (591)
T ss_pred HHHHHHHHH-hc--CCCeEEEEEecchhHhcCCE---------EEEEECCeeEE
Confidence 888666665 22 48999999999999998888 67777777654
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.5e-14 Score=133.93 Aligned_cols=144 Identities=20% Similarity=0.141 Sum_probs=102.4
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh-----------------------------hcCccc---c
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA-----------------------------QVGSFV---P 690 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a-----------------------------~~g~~v---p 690 (888)
..=+.+++|+..+|++.+|+|.+||||||||++++.-.... ---.|| |
T Consensus 19 ~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP 98 (258)
T COG4107 19 GKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNP 98 (258)
T ss_pred CcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCc
Confidence 34467899999999999999999999999999986321100 000122 2
Q ss_pred ccc--------ccccH----------------HHHHHHhcCC-chhhhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCC
Q 002722 691 CDR--------ASISV----------------RDCIFARVGA-GDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDEL 744 (888)
Q Consensus 691 ~~~--------~~~~~----------------~d~i~~~~~~-~d~~~~~~s~f~~e~~~~~~il~~-~~~~slvllDEp 744 (888)
++. +.++- ...++.++.. .+.+.....+|+++|++...|.++ .+.|.|+++|||
T Consensus 99 ~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEP 178 (258)
T COG4107 99 RDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEP 178 (258)
T ss_pred cccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecCC
Confidence 111 11110 1124444442 234555678999999998887775 799999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 745 GRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 745 ~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
|.|+|..-...+ ..++.-+..+.+..++++|||..++.+...
T Consensus 179 TGGLDVSVQARL-LDllrgLv~~l~la~viVTHDl~VarLla~ 220 (258)
T COG4107 179 TGGLDVSVQARL-LDLLRGLVRELGLAVVIVTHDLAVARLLAD 220 (258)
T ss_pred CCCcchhhHHHH-HHHHHHHHHhcCceEEEEechhHHHHHhhh
Confidence 999999777766 667777777689999999999999985543
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=4e-14 Score=168.31 Aligned_cols=154 Identities=15% Similarity=0.076 Sum_probs=107.0
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh--------------------hhcCcccccccccc------
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRASI------ 696 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~--------------------a~~g~~vp~~~~~~------ 696 (888)
.++.++++|++++|+.++|+||||||||||++.+++..-. .+.-.++|++..-+
T Consensus 336 ~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~ 415 (547)
T PRK10522 336 GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGP 415 (547)
T ss_pred CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhcc
Confidence 4688999999999999999999999999999999865311 11112455443110
Q ss_pred -------cHHHHHHHhcCCchhhhhc-----cchhHHHHHHHHHH-HHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHH
Q 002722 697 -------SVRDCIFARVGAGDCQLRG-----VSTFMQEMLETASI-LKGATDRSLIIIDELGRGTSTYDGFGLAWAICEH 763 (888)
Q Consensus 697 -------~~~d~i~~~~~~~d~~~~~-----~s~f~~e~~~~~~i-l~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~ 763 (888)
..+...+.+++..+....+ -..+|++++|...+ ...+.+|+++||||||+|+|+.....+...+.+.
T Consensus 416 n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~ 495 (547)
T PRK10522 416 EGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPL 495 (547)
T ss_pred ccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 1122345556655443221 23577666555444 4458899999999999999999888885555555
Q ss_pred HHhcCCCeEEEEecChhHHHHhhhccccccccccccEeEEEEE
Q 002722 764 LVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 764 l~~~~~~~~l~~TH~~~l~~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
+.. .++++|++||.++....+|+ .-.+.++++.
T Consensus 496 ~~~-~~~tvi~itH~~~~~~~~d~---------i~~l~~G~i~ 528 (547)
T PRK10522 496 LQE-MGKTIFAISHDDHYFIHADR---------LLEMRNGQLS 528 (547)
T ss_pred HHh-CCCEEEEEEechHHHHhCCE---------EEEEECCEEE
Confidence 443 48999999999988888887 5556666553
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.1e-14 Score=170.97 Aligned_cols=157 Identities=15% Similarity=0.181 Sum_probs=112.0
Q ss_pred cccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh--------------------hcCccccccccc---cc-
Q 002722 642 VNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA--------------------QVGSFVPCDRAS---IS- 697 (888)
Q Consensus 642 ~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a--------------------~~g~~vp~~~~~---~~- 697 (888)
.+.+.+++++.+.+|++++|+|||||||||||+++++..... +.-.|||++... ++
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 457899999999999999999999999999999998743211 111355544311 11
Q ss_pred -----------------------HHHHHHHhcCCchhhhhcc------chhHHHH-HHHHHHHHhCCCCcEEEEeCCCCC
Q 002722 698 -----------------------VRDCIFARVGAGDCQLRGV------STFMQEM-LETASILKGATDRSLIIIDELGRG 747 (888)
Q Consensus 698 -----------------------~~d~i~~~~~~~d~~~~~~------s~f~~e~-~~~~~il~~~~~~slvllDEp~~g 747 (888)
.++.++..+|..+...... ..+|+++ ++++.+...+++|++++||||++|
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsg 196 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSG 196 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcc
Confidence 1344556666544222211 2466554 455555566899999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEecCh--hHHHHhhhccccccccccccEeEEEEEEEE
Q 002722 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFH--ELTALAHENANEFNTKQMVGVANYHVSAHI 809 (888)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~--~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 809 (888)
+|+.....+ ...++.+++ .|.++|++||++ ++.+++|+ ..-+.++++.+..
T Consensus 197 LD~~~~~~l-~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~---------i~ll~~G~~v~~G 249 (617)
T TIGR00955 197 LDSFMAYSV-VQVLKGLAQ-KGKTIICTIHQPSSELFELFDK---------IILMAEGRVAYLG 249 (617)
T ss_pred hhHHHHHHH-HHHHHHHHh-CCCEEEEEeCCCCHHHHHHhce---------EEEeeCCeEEEEC
Confidence 999999998 556677776 599999999996 46788888 6667778776653
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.5e-14 Score=139.15 Aligned_cols=141 Identities=21% Similarity=0.219 Sum_probs=102.4
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHh---------------------hhhcCc---c-ccccccc---
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL---------------------MAQVGS---F-VPCDRAS--- 695 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~---------------------~a~~g~---~-vp~~~~~--- 695 (888)
.-.|+++|++++|+.-+|+|||||||||+|-.|.+-+. .|++|. | .|.-...
T Consensus 19 ~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV 98 (249)
T COG4674 19 KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTV 98 (249)
T ss_pred eeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhccH
Confidence 46789999999999999999999999999999864321 223221 1 0100000
Q ss_pred --------------------------ccHHHHHHHhcCCchhhhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCC
Q 002722 696 --------------------------ISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGT 748 (888)
Q Consensus 696 --------------------------~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~slvllDEp~~gt 748 (888)
-.-+|.++..+|+.+......+.+|-+.+|...|-.. +.+|.|+++|||.+|+
T Consensus 99 ~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGM 178 (249)
T COG4674 99 RENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGM 178 (249)
T ss_pred HHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEEecCccCCC
Confidence 1123456666777776666667777666665555443 6899999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHH-Hhhh
Q 002722 749 STYDGFGLAWAICEHLVEEIRAPTLFATHFHELTA-LAHE 787 (888)
Q Consensus 749 d~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~-~~~~ 787 (888)
.-.+.... ..++..++. ++.++++-||+++.+ ++++
T Consensus 179 Td~Et~~t-aeLl~~la~--~hsilVVEHDM~Fvr~~A~~ 215 (249)
T COG4674 179 TDAETEKT-AELLKSLAG--KHSILVVEHDMGFVREIADK 215 (249)
T ss_pred cHHHHHHH-HHHHHHHhc--CceEEEEeccHHHHHHhhhe
Confidence 99898888 567788875 799999999999885 6665
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.3e-13 Score=163.27 Aligned_cols=142 Identities=17% Similarity=0.034 Sum_probs=98.1
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh--------------------hcCccccccccc--ccHHH
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA--------------------QVGSFVPCDRAS--ISVRD 700 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a--------------------~~g~~vp~~~~~--~~~~d 700 (888)
.++.++++|++++|+.++|+||||||||||+|.++++.-+. +.-+|+|++..- -++.+
T Consensus 353 ~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~ 432 (576)
T TIGR02204 353 QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVME 432 (576)
T ss_pred CccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHH
Confidence 47889999999999999999999999999999998753221 112456655421 11111
Q ss_pred ---------------HHHHhcCCc-----------hhhhhccchhHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChhhH
Q 002722 701 ---------------CIFARVGAG-----------DCQLRGVSTFMQEMLE-TASILKGATDRSLIIIDELGRGTSTYDG 753 (888)
Q Consensus 701 ---------------~i~~~~~~~-----------d~~~~~~s~f~~e~~~-~~~il~~~~~~slvllDEp~~gtd~~~~ 753 (888)
..+...|+. ..+..+...+|++.+| ++.+...+.+|+++||||||+++|+...
T Consensus 433 Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~ 512 (576)
T TIGR02204 433 NIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESE 512 (576)
T ss_pred HHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHH
Confidence 122222322 2223344557655544 4555555789999999999999999887
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 754 FGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
..+ ...+..+. .++++|++||..+....+|+
T Consensus 513 ~~i-~~~l~~~~--~~~t~IiitH~~~~~~~~d~ 543 (576)
T TIGR02204 513 QLV-QQALETLM--KGRTTLIIAHRLATVLKADR 543 (576)
T ss_pred HHH-HHHHHHHh--CCCEEEEEecchHHHHhCCE
Confidence 766 44555554 37999999999988887777
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.9e-14 Score=160.75 Aligned_cols=153 Identities=16% Similarity=0.089 Sum_probs=111.9
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh-------------------------hcCccccccc--ccc
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA-------------------------QVGSFVPCDR--ASI 696 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a-------------------------~~g~~vp~~~--~~~ 696 (888)
...++|+|++.+|++++|+|++||||||+.|+++++.... |++.--|-.+ .+.
T Consensus 305 ~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~ 384 (539)
T COG1123 305 KAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRM 384 (539)
T ss_pred eeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccc
Confidence 4568999999999999999999999999999998765331 1110001000 000
Q ss_pred ----------------------cHHHHHHHhcCCchh-hhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhh
Q 002722 697 ----------------------SVRDCIFARVGAGDC-QLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYD 752 (888)
Q Consensus 697 ----------------------~~~d~i~~~~~~~d~-~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~ 752 (888)
..++.++.++|+..+ +.+....||++.+|...|.+ .+.+|.++|+|||++.+|+..
T Consensus 385 tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsv 464 (539)
T COG1123 385 TVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSV 464 (539)
T ss_pred cHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHH
Confidence 124456777887664 66777889987776655554 589999999999999999998
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEecChhHHH-HhhhccccccccccccEeEEEEE
Q 002722 753 GFGLAWAICEHLVEEIRAPTLFATHFHELTA-LAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 753 ~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~-~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
...+ ..++..+.++.|.+.||+|||+.+.+ +||+ ...+..+++.
T Consensus 465 qa~V-lnLl~~lq~e~g~t~lfISHDl~vV~~i~dr---------v~vm~~G~iV 509 (539)
T COG1123 465 QAQV-LNLLKDLQEELGLTYLFISHDLAVVRYIADR---------VAVMYDGRIV 509 (539)
T ss_pred HHHH-HHHHHHHHHHhCCEEEEEeCCHHHHHhhCce---------EEEEECCeEE
Confidence 8888 55666677668999999999998875 7777 5555665553
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.8e-13 Score=162.39 Aligned_cols=142 Identities=16% Similarity=0.031 Sum_probs=99.2
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh--------------------hhcCccccccccc--ccH--
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRAS--ISV-- 698 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~--------------------a~~g~~vp~~~~~--~~~-- 698 (888)
.++.++++|++.+|+.++|+||||+|||||+|.++++.-. .+.-+|+|++..- -++
T Consensus 345 ~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~ 424 (571)
T TIGR02203 345 RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIAN 424 (571)
T ss_pred CccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHH
Confidence 4789999999999999999999999999999999765321 1122456655311 011
Q ss_pred --------------HHHHHHhcCCchh-----------hhhccchhHHHHHHH-HHHHHhCCCCcEEEEeCCCCCCChhh
Q 002722 699 --------------RDCIFARVGAGDC-----------QLRGVSTFMQEMLET-ASILKGATDRSLIIIDELGRGTSTYD 752 (888)
Q Consensus 699 --------------~d~i~~~~~~~d~-----------~~~~~s~f~~e~~~~-~~il~~~~~~slvllDEp~~gtd~~~ 752 (888)
+...+...|+.+. +..+-..+|++.+|. +.+...+.+|+++||||||+++|+..
T Consensus 425 Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~ 504 (571)
T TIGR02203 425 NIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNES 504 (571)
T ss_pred HHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 1123333443332 222334567655555 44445588999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 753 GFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 753 ~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
...+ ...+..+. .++++|++||+..+...+|+
T Consensus 505 ~~~i-~~~L~~~~--~~~tiIiitH~~~~~~~~D~ 536 (571)
T TIGR02203 505 ERLV-QAALERLM--QGRTTLVIAHRLSTIEKADR 536 (571)
T ss_pred HHHH-HHHHHHHh--CCCEEEEEehhhHHHHhCCE
Confidence 8888 44445544 37999999999998888887
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.6e-13 Score=163.14 Aligned_cols=142 Identities=13% Similarity=0.037 Sum_probs=98.8
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh--------------------hhcCcccccccccc--cH--
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRASI--SV-- 698 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~--------------------a~~g~~vp~~~~~~--~~-- 698 (888)
..+.++++|++++|+.++|+||||||||||+|.++++.-+ .+.-+|+|++..-+ ++
T Consensus 354 ~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~ 433 (592)
T PRK10790 354 NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLA 433 (592)
T ss_pred CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHH
Confidence 4689999999999999999999999999999999765322 12224666654211 11
Q ss_pred ------------HHHHHHhcCCchhh-----------hhccchhHHHHHHH-HHHHHhCCCCcEEEEeCCCCCCChhhHH
Q 002722 699 ------------RDCIFARVGAGDCQ-----------LRGVSTFMQEMLET-ASILKGATDRSLIIIDELGRGTSTYDGF 754 (888)
Q Consensus 699 ------------~d~i~~~~~~~d~~-----------~~~~s~f~~e~~~~-~~il~~~~~~slvllDEp~~gtd~~~~~ 754 (888)
+.+.....|+.+.+ ..+-..+|++.+|. +.+...+.+|+++||||||+++|+....
T Consensus 434 NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~ 513 (592)
T PRK10790 434 NVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQ 513 (592)
T ss_pred HHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHH
Confidence 11233344444322 22233466655554 5444557899999999999999998888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 755 GLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
.+.. .+..+.. ++++|++||.++....+|+
T Consensus 514 ~i~~-~l~~~~~--~~tvIivtHr~~~l~~~D~ 543 (592)
T PRK10790 514 AIQQ-ALAAVRE--HTTLVVIAHRLSTIVEADT 543 (592)
T ss_pred HHHH-HHHHHhC--CCEEEEEecchHHHHhCCE
Confidence 7744 4444443 6999999999988887877
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.6e-14 Score=169.58 Aligned_cols=141 Identities=14% Similarity=0.015 Sum_probs=98.4
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhh--------------------cCccccccccc--ccHHH
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ--------------------VGSFVPCDRAS--ISVRD 700 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~--------------------~g~~vp~~~~~--~~~~d 700 (888)
..+.++++|++++|+.++|+||+|||||||++.+++.. ..+ .-+|||++..- -++.+
T Consensus 363 ~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~e 441 (588)
T PRK11174 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRD 441 (588)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHH
Confidence 46889999999999999999999999999999998764 211 12356655421 11111
Q ss_pred H---------------HHHhcCC-----------chhhhhccchhHHHHHHH-HHHHHhCCCCcEEEEeCCCCCCChhhH
Q 002722 701 C---------------IFARVGA-----------GDCQLRGVSTFMQEMLET-ASILKGATDRSLIIIDELGRGTSTYDG 753 (888)
Q Consensus 701 ~---------------i~~~~~~-----------~d~~~~~~s~f~~e~~~~-~~il~~~~~~slvllDEp~~gtd~~~~ 753 (888)
. .+...++ ...+..+-..+|++.+|. +.+...+.+|+++||||||+++|+...
T Consensus 442 NI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te 521 (588)
T PRK11174 442 NVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSE 521 (588)
T ss_pred HhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 1 1222222 222333334577665555 444455889999999999999999988
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 754 FGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
..+.. .+..+. .+.|+|++||.++....+|+
T Consensus 522 ~~i~~-~l~~~~--~~~TvIiItHrl~~i~~aD~ 552 (588)
T PRK11174 522 QLVMQ-ALNAAS--RRQTTLMVTHQLEDLAQWDQ 552 (588)
T ss_pred HHHHH-HHHHHh--CCCEEEEEecChHHHHhCCE
Confidence 88854 444444 37899999999988887777
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.6e-13 Score=161.20 Aligned_cols=142 Identities=15% Similarity=0.019 Sum_probs=96.6
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh--------------------hcCccccccccc--ccHHH
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA--------------------QVGSFVPCDRAS--ISVRD 700 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a--------------------~~g~~vp~~~~~--~~~~d 700 (888)
..+.++++|++++|+.++|+||||||||||++++++..-.. +.-.++|++..- -++.+
T Consensus 348 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~ 427 (585)
T TIGR01192 348 SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRE 427 (585)
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHH
Confidence 35789999999999999999999999999999997653211 112355554311 11111
Q ss_pred HH---------------HHhcCCch-----------hhhhccchhHHHHHHH-HHHHHhCCCCcEEEEeCCCCCCChhhH
Q 002722 701 CI---------------FARVGAGD-----------CQLRGVSTFMQEMLET-ASILKGATDRSLIIIDELGRGTSTYDG 753 (888)
Q Consensus 701 ~i---------------~~~~~~~d-----------~~~~~~s~f~~e~~~~-~~il~~~~~~slvllDEp~~gtd~~~~ 753 (888)
.+ ....++.+ .+..+...+|++++|. +.+...+.+|+++||||||+|+|+...
T Consensus 428 Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~ 507 (585)
T TIGR01192 428 NIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETE 507 (585)
T ss_pred HHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHH
Confidence 11 11122222 2223334566555554 544555899999999999999999988
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 754 FGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
..+ ...++.+. .+.++|++||+.+....+|+
T Consensus 508 ~~i-~~~l~~~~--~~~tvI~isH~~~~~~~~d~ 538 (585)
T TIGR01192 508 ARV-KNAIDALR--KNRTTFIIAHRLSTVRNADL 538 (585)
T ss_pred HHH-HHHHHHHh--CCCEEEEEEcChHHHHcCCE
Confidence 888 55555554 37999999999988777776
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.2e-14 Score=170.01 Aligned_cols=140 Identities=15% Similarity=0.066 Sum_probs=98.4
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhh---------cCccccccccc--ccH-------------
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ---------VGSFVPCDRAS--ISV------------- 698 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~---------~g~~vp~~~~~--~~~------------- 698 (888)
..+.++++|++.+|++++|+||||||||||+|+++++..... .-.|+|++..- -++
T Consensus 465 ~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~ 544 (659)
T TIGR00954 465 DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDM 544 (659)
T ss_pred CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhh
Confidence 468889999999999999999999999999999988642211 11355554310 011
Q ss_pred ---------HHHHHHhcCCchhhhhc---------cchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHH
Q 002722 699 ---------RDCIFARVGAGDCQLRG---------VSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWA 759 (888)
Q Consensus 699 ---------~d~i~~~~~~~d~~~~~---------~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~ 759 (888)
+..++.++++.+.+... ...+|++++|...+++ .+.+|+++||||||+|+|+.....+
T Consensus 545 ~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l--- 621 (659)
T TIGR00954 545 KRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYM--- 621 (659)
T ss_pred hccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHH---
Confidence 12345555655444332 2568877766655554 4789999999999999999866655
Q ss_pred HHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 760 ICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 760 il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
.+.+.+ .|.++|++||+.++...+|+
T Consensus 622 -~~~l~~-~~~tvI~isH~~~~~~~~d~ 647 (659)
T TIGR00954 622 -YRLCRE-FGITLFSVSHRKSLWKYHEY 647 (659)
T ss_pred -HHHHHH-cCCEEEEEeCchHHHHhCCE
Confidence 333444 48999999999998777765
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.1e-14 Score=157.65 Aligned_cols=159 Identities=19% Similarity=0.177 Sum_probs=114.4
Q ss_pred cCceeeecc------CcccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhcCcccccc-------------
Q 002722 632 RHPCVEAQD------WVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCD------------- 692 (888)
Q Consensus 632 rhp~~~~~~------~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~g~~vp~~------------- 692 (888)
-||++-..+ ++..+.++++|.++.+.-++++||||+|||||||.+.+... ..+|...|-.
T Consensus 386 p~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~-p~~G~vs~~~H~~~~~y~Qh~~e 464 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ-PTIGMVSRHSHNKLPRYNQHLAE 464 (614)
T ss_pred CCCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc-cccccccccccccchhhhhhhHh
Confidence 367765432 22258889999999999999999999999999999865321 1122221111
Q ss_pred ------------------cccccHHHHHHHhcCCc-hhhhhccchhHHHHHHHH-HHHHhCCCCcEEEEeCCCCCCChhh
Q 002722 693 ------------------RASISVRDCIFARVGAG-DCQLRGVSTFMQEMLETA-SILKGATDRSLIIIDELGRGTSTYD 752 (888)
Q Consensus 693 ------------------~~~~~~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~-~il~~~~~~slvllDEp~~gtd~~~ 752 (888)
..+...+..++.|+|.. |......+++|++++... .+......|.|+||||||+|+|...
T Consensus 465 ~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~t 544 (614)
T KOG0927|consen 465 QLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIET 544 (614)
T ss_pred hcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchh
Confidence 12334456788999976 777788899998876654 4444578999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhhccccccccccccEeEEEE
Q 002722 753 GFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHV 805 (888)
Q Consensus 753 ~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~ 805 (888)
..+++.+| .+ ..-++|++|||.-+. +++++ ++.+.++.+
T Consensus 545 id~laeai----Ne-~~Ggvv~vSHDfrlI~qVaeE---------i~~c~~~~~ 584 (614)
T KOG0927|consen 545 IDALAEAI----NE-FPGGVVLVSHDFRLISQVAEE---------IWVCENGTV 584 (614)
T ss_pred HHHHHHHH----hc-cCCceeeeechhhHHHHHHHH---------hHhhccCce
Confidence 77775443 33 456799999997766 57777 787777654
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.6e-13 Score=161.69 Aligned_cols=142 Identities=13% Similarity=0.010 Sum_probs=98.0
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh--------------------hhcCcccccccccc--cHHH
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRASI--SVRD 700 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~--------------------a~~g~~vp~~~~~~--~~~d 700 (888)
..+.++++|++++|+.++|+||||||||||++.++++.-+ .+.-+|+|++..-+ ++.+
T Consensus 356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~ 435 (582)
T PRK11176 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIAN 435 (582)
T ss_pred CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHH
Confidence 4689999999999999999999999999999999875321 11224666554211 1111
Q ss_pred H----------------HHHhcCCchh-----------hhhccchhHHHHHHHHH-HHHhCCCCcEEEEeCCCCCCChhh
Q 002722 701 C----------------IFARVGAGDC-----------QLRGVSTFMQEMLETAS-ILKGATDRSLIIIDELGRGTSTYD 752 (888)
Q Consensus 701 ~----------------i~~~~~~~d~-----------~~~~~s~f~~e~~~~~~-il~~~~~~slvllDEp~~gtd~~~ 752 (888)
. .+...|+.+. +..+-..+|++.+|... +.....+|+++||||||+++|+..
T Consensus 436 Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t 515 (582)
T PRK11176 436 NIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES 515 (582)
T ss_pred HHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHH
Confidence 1 1222232221 12222457766655544 445578999999999999999998
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 753 GFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 753 ~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
...+..++ ..+. .++|+|++||..+....+|+
T Consensus 516 ~~~i~~~l-~~~~--~~~tvI~VtHr~~~~~~~D~ 547 (582)
T PRK11176 516 ERAIQAAL-DELQ--KNRTSLVIAHRLSTIEKADE 547 (582)
T ss_pred HHHHHHHH-HHHh--CCCEEEEEecchHHHHhCCE
Confidence 88885444 4444 37999999999998888887
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.6e-13 Score=163.84 Aligned_cols=142 Identities=14% Similarity=0.073 Sum_probs=99.2
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh--------------------hhcCcccccccccc--cHHH
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRASI--SVRD 700 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~--------------------a~~g~~vp~~~~~~--~~~d 700 (888)
.++.++++|++++|+.++|+||||||||||+|.++++.-. .+.-.+||++..-+ ++.+
T Consensus 478 ~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~e 557 (694)
T TIGR03375 478 TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRD 557 (694)
T ss_pred ccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHH
Confidence 4689999999999999999999999999999999765311 11223566553210 1111
Q ss_pred ---------------HHHHhcCCchh-----------hhhccchhHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhH
Q 002722 701 ---------------CIFARVGAGDC-----------QLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYDG 753 (888)
Q Consensus 701 ---------------~i~~~~~~~d~-----------~~~~~s~f~~e~~~~~~il-~~~~~~slvllDEp~~gtd~~~~ 753 (888)
......++.+. +..+-..+|++++|...++ ....+|+++||||||+++|+...
T Consensus 558 Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te 637 (694)
T TIGR03375 558 NIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSE 637 (694)
T ss_pred HHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence 12233333332 2233346776666654444 45789999999999999999988
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 754 FGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
..+.. .+..+.+ ++|+|++||.++....+|+
T Consensus 638 ~~i~~-~l~~~~~--~~T~iiItHrl~~~~~~D~ 668 (694)
T TIGR03375 638 ERFKD-RLKRWLA--GKTLVLVTHRTSLLDLVDR 668 (694)
T ss_pred HHHHH-HHHHHhC--CCEEEEEecCHHHHHhCCE
Confidence 88844 4455543 7999999999998888877
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.7e-13 Score=158.53 Aligned_cols=142 Identities=11% Similarity=-0.000 Sum_probs=96.8
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh--------------------hhcCcccccccccc--cHHH
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRASI--SVRD 700 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~--------------------a~~g~~vp~~~~~~--~~~d 700 (888)
.++.++++|++.+|+.++|+||||||||||++.++++.-+ .+.-.++|++..-+ ++.+
T Consensus 328 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~ 407 (569)
T PRK10789 328 HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVAN 407 (569)
T ss_pred CccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHH
Confidence 4688999999999999999999999999999999865321 11123455443110 1111
Q ss_pred ---------------HHHHhcCCchhh-----------hhccchhHHHHHHHH-HHHHhCCCCcEEEEeCCCCCCChhhH
Q 002722 701 ---------------CIFARVGAGDCQ-----------LRGVSTFMQEMLETA-SILKGATDRSLIIIDELGRGTSTYDG 753 (888)
Q Consensus 701 ---------------~i~~~~~~~d~~-----------~~~~s~f~~e~~~~~-~il~~~~~~slvllDEp~~gtd~~~~ 753 (888)
..+...++.+.+ ..+...+|++++|.. .+...+.+|+++||||||+|+|+...
T Consensus 408 Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~ 487 (569)
T PRK10789 408 NIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTE 487 (569)
T ss_pred HHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHH
Confidence 122223333222 222345666665554 44455889999999999999999988
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 754 FGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
..+.. .+..+. .++++|++||..+....+|+
T Consensus 488 ~~i~~-~l~~~~--~~~tii~itH~~~~~~~~d~ 518 (569)
T PRK10789 488 HQILH-NLRQWG--EGRTVIISAHRLSALTEASE 518 (569)
T ss_pred HHHHH-HHHHHh--CCCEEEEEecchhHHHcCCE
Confidence 88844 444444 38999999999987777776
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.2e-13 Score=164.13 Aligned_cols=152 Identities=13% Similarity=0.041 Sum_probs=103.6
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh--------------------hhcCccccccccc--ccHH-
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRAS--ISVR- 699 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~--------------------a~~g~~vp~~~~~--~~~~- 699 (888)
..+.++++|++++|+.++|+||||||||||+|.++++..+ .+.-++||++..- -++.
T Consensus 470 ~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~e 549 (694)
T TIGR01846 470 PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRD 549 (694)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHH
Confidence 4688999999999999999999999999999999865321 1122356655311 0111
Q ss_pred --------------HHHHHhcCCch-----------hhhhccchhHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhH
Q 002722 700 --------------DCIFARVGAGD-----------CQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYDG 753 (888)
Q Consensus 700 --------------d~i~~~~~~~d-----------~~~~~~s~f~~e~~~~~~il-~~~~~~slvllDEp~~gtd~~~~ 753 (888)
.......++.+ .+..+...+|++++|...++ ..+.+|+++||||||+|+|+...
T Consensus 550 Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~ 629 (694)
T TIGR01846 550 NIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESE 629 (694)
T ss_pred HHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHH
Confidence 11222333322 22333456776666654444 45789999999999999999988
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhhccccccccccccEeEEEEE
Q 002722 754 FGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
..+... +..+. .++++|++||.++....+|+ +-.+.++++.
T Consensus 630 ~~i~~~-l~~~~--~~~t~i~itH~~~~~~~~d~---------ii~l~~G~i~ 670 (694)
T TIGR01846 630 ALIMRN-MREIC--RGRTVIIIAHRLSTVRACDR---------IIVLEKGQIA 670 (694)
T ss_pred HHHHHH-HHHHh--CCCEEEEEeCChHHHHhCCE---------EEEEeCCEEE
Confidence 888444 44443 47999999999988877777 5555555543
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.5e-13 Score=163.77 Aligned_cols=150 Identities=15% Similarity=0.052 Sum_probs=102.9
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh--------------------hhcCcccccccccc--cHH-
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRASI--SVR- 699 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~--------------------a~~g~~vp~~~~~~--~~~- 699 (888)
.++.++++|++++|+.++|+||||||||||+|.++++.-+ .+.-++||++..-+ ++.
T Consensus 466 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~e 545 (686)
T TIGR03797 466 PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFE 545 (686)
T ss_pred ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHH
Confidence 5789999999999999999999999999999999765321 11224666654211 111
Q ss_pred -------------HHHHHhcCCchhh-----------hhccchhHHHHHHHHH-HHHhCCCCcEEEEeCCCCCCChhhHH
Q 002722 700 -------------DCIFARVGAGDCQ-----------LRGVSTFMQEMLETAS-ILKGATDRSLIIIDELGRGTSTYDGF 754 (888)
Q Consensus 700 -------------d~i~~~~~~~d~~-----------~~~~s~f~~e~~~~~~-il~~~~~~slvllDEp~~gtd~~~~~ 754 (888)
.......|+.+.+ ..+-+.+|++.+|... +.....+|+++||||||+++|+....
T Consensus 546 Ni~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~ 625 (686)
T TIGR03797 546 NIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQA 625 (686)
T ss_pred HHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHH
Confidence 1223333443332 2333557766655544 44458999999999999999998877
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecChhHHHHhhhccccccccccccEeEEEEE
Q 002722 755 GLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
.+... +.+ .++|+|++||.++....+|+ +-.+.++++.
T Consensus 626 ~i~~~----L~~-~~~T~IiItHr~~~i~~~D~---------Iivl~~G~iv 663 (686)
T TIGR03797 626 IVSES----LER-LKVTRIVIAHRLSTIRNADR---------IYVLDAGRVV 663 (686)
T ss_pred HHHHH----HHH-hCCeEEEEecChHHHHcCCE---------EEEEECCEEE
Confidence 76333 333 36899999999988888887 5555555543
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.5e-14 Score=173.68 Aligned_cols=153 Identities=18% Similarity=0.150 Sum_probs=117.7
Q ss_pred ccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHH----------------------hhhhcCccccccccccc-----
Q 002722 645 IPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI----------------------LMAQVGSFVPCDRASIS----- 697 (888)
Q Consensus 645 v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~----------------------~~a~~g~~vp~~~~~~~----- 697 (888)
.-+++++.+++|++.++.|||||||||+++++.+.. ...++| |.|+..+-..
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iG-yCPQ~d~l~~~lT~r 658 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLG-YCPQFDALWEELTGR 658 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcc-cCCchhhhhhhccHH
Confidence 457899999999999999999999999999886532 122344 5665532110
Q ss_pred -------------------HHHHHHHhcCCchhhhhccchhHHHHHHH-HHHHHhCCCCcEEEEeCCCCCCChhhHHHHH
Q 002722 698 -------------------VRDCIFARVGAGDCQLRGVSTFMQEMLET-ASILKGATDRSLIIIDELGRGTSTYDGFGLA 757 (888)
Q Consensus 698 -------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~-~~il~~~~~~slvllDEp~~gtd~~~~~~i~ 757 (888)
.++.++..+|..+......+++++++++. ..+++...+|++|+||||++|+||..+..+
T Consensus 659 EhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~l- 737 (885)
T KOG0059|consen 659 EHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHL- 737 (885)
T ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHH-
Confidence 13345566777777777788899888775 555566789999999999999999777777
Q ss_pred HHHHHHHHhcCCCeEEEEecChhHHH-HhhhccccccccccccEeEEEEEEEE
Q 002722 758 WAICEHLVEEIRAPTLFATHFHELTA-LAHENANEFNTKQMVGVANYHVSAHI 809 (888)
Q Consensus 758 ~~il~~l~~~~~~~~l~~TH~~~l~~-~~~~~~~~~~~~~~~~v~~~~~~~~~ 809 (888)
|.++..+.+ .|..+|++||.+|.++ +|++ ..-+.++++.+..
T Consensus 738 W~ii~~~~k-~g~aiiLTSHsMeE~EaLCtR---------~aImv~G~l~ciG 780 (885)
T KOG0059|consen 738 WDIIARLRK-NGKAIILTSHSMEEAEALCTR---------TAIMVIGQLRCIG 780 (885)
T ss_pred HHHHHHHHh-cCCEEEEEcCCHHHHHHHhhh---------hheeecCeeEEec
Confidence 999999987 4559999999999886 8888 6667777777743
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.2e-13 Score=144.75 Aligned_cols=83 Identities=19% Similarity=0.182 Sum_probs=65.2
Q ss_pred HHhcCCch-hhhhccchhHHHHHHHHHHHHh-CC---CCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEec
Q 002722 703 FARVGAGD-CQLRGVSTFMQEMLETASILKG-AT---DRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATH 777 (888)
Q Consensus 703 ~~~~~~~d-~~~~~~s~f~~e~~~~~~il~~-~~---~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH 777 (888)
+.++|+.. .+....+++|+++++...+.+. +. +|+++|||||++|+|+.+...+ ..++..+.+ .|.++|++||
T Consensus 153 L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l-~~~L~~l~~-~g~tvIiitH 230 (261)
T cd03271 153 LCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKL-LEVLQRLVD-KGNTVVVIEH 230 (261)
T ss_pred HHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHH-HHHHHHHHh-CCCEEEEEeC
Confidence 44567765 4677778899888777666654 33 3799999999999999999988 666777776 5899999999
Q ss_pred ChhHHHHhhh
Q 002722 778 FHELTALAHE 787 (888)
Q Consensus 778 ~~~l~~~~~~ 787 (888)
++++...+++
T Consensus 231 ~~~~i~~aD~ 240 (261)
T cd03271 231 NLDVIKCADW 240 (261)
T ss_pred CHHHHHhCCE
Confidence 9988776665
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.9e-14 Score=165.71 Aligned_cols=142 Identities=14% Similarity=0.002 Sum_probs=100.5
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh--------------------hhcCccccccccc--ccH--
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRAS--ISV-- 698 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~--------------------a~~g~~vp~~~~~--~~~-- 698 (888)
..+.++++|++.+|+.++|+||||||||||++.+++..-. .+.-++||++..- -++
T Consensus 353 ~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ 432 (574)
T PRK11160 353 QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRD 432 (574)
T ss_pred CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHH
Confidence 4688999999999999999999999999999999765311 1112356655411 011
Q ss_pred -------------HHHHHHhcCCchhhhh----------ccchhHHHHHHHHH-HHHhCCCCcEEEEeCCCCCCChhhHH
Q 002722 699 -------------RDCIFARVGAGDCQLR----------GVSTFMQEMLETAS-ILKGATDRSLIIIDELGRGTSTYDGF 754 (888)
Q Consensus 699 -------------~d~i~~~~~~~d~~~~----------~~s~f~~e~~~~~~-il~~~~~~slvllDEp~~gtd~~~~~ 754 (888)
+...+...++.+.+.. +...+|++.+|... +...+.+|+++||||||+++|+....
T Consensus 433 Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~ 512 (574)
T PRK11160 433 NLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETER 512 (574)
T ss_pred HhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 2233455565554432 34457766655544 44458899999999999999999888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 755 GLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
.+.. .+..+. .++++|++||.++....+|+
T Consensus 513 ~i~~-~l~~~~--~~~tviiitHr~~~~~~~d~ 542 (574)
T PRK11160 513 QILE-LLAEHA--QNKTVLMITHRLTGLEQFDR 542 (574)
T ss_pred HHHH-HHHHHc--CCCEEEEEecChhHHHhCCE
Confidence 8844 444444 37899999999988777777
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-13 Score=163.94 Aligned_cols=151 Identities=17% Similarity=0.107 Sum_probs=106.0
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh---------------------hhcCccccccccc-------
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM---------------------AQVGSFVPCDRAS------- 695 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~---------------------a~~g~~vp~~~~~------- 695 (888)
++.++++|++.+|++++|+|||||||||+++.+++..-+ .++ .+||++..-
T Consensus 356 ~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i-~~v~q~~~lf~~ti~~ 434 (555)
T TIGR01194 356 FALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLF-SAIFADFHLFDDLIGP 434 (555)
T ss_pred ceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhC-cEEccChhhhhhhhhc
Confidence 688999999999999999999999999999999764321 112 244443210
Q ss_pred -------ccHHHHHHHhcCCchhhh---hcc---chhHHHHHHH-HHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHH
Q 002722 696 -------ISVRDCIFARVGAGDCQL---RGV---STFMQEMLET-ASILKGATDRSLIIIDELGRGTSTYDGFGLAWAIC 761 (888)
Q Consensus 696 -------~~~~d~i~~~~~~~d~~~---~~~---s~f~~e~~~~-~~il~~~~~~slvllDEp~~gtd~~~~~~i~~~il 761 (888)
-..+...+...+..+.+. .|. ..+|++++|. +.+...+.+|+++||||||+++|+.....+...++
T Consensus 435 n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~ 514 (555)
T TIGR01194 435 DEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELL 514 (555)
T ss_pred ccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 011223455566555432 222 4566666555 44445588999999999999999998888866666
Q ss_pred HHHHhcCCCeEEEEecChhHHHHhhhccccccccccccEeEEEE
Q 002722 762 EHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHV 805 (888)
Q Consensus 762 ~~l~~~~~~~~l~~TH~~~l~~~~~~~~~~~~~~~~~~v~~~~~ 805 (888)
+.+.. .++++|++||+++..+.+|+ .-.+.++++
T Consensus 515 ~~~~~-~~~tiiiisH~~~~~~~~d~---------i~~l~~G~i 548 (555)
T TIGR01194 515 PDLKR-QGKTIIIISHDDQYFELADQ---------IIKLAAGCI 548 (555)
T ss_pred HHHHh-CCCEEEEEeccHHHHHhCCE---------EEEEECCEE
Confidence 65544 58999999999988888877 555555554
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.6e-14 Score=168.14 Aligned_cols=139 Identities=16% Similarity=0.179 Sum_probs=92.8
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHH---hhh--hcCccccccc--ccccH-----------------
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI---LMA--QVGSFVPCDR--ASISV----------------- 698 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~---~~a--~~g~~vp~~~--~~~~~----------------- 698 (888)
..+.++++|++..|+.++|+||||||||||||++++.. +.. .++ +++++. .....
T Consensus 190 ~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~-~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~ 268 (718)
T PLN03073 190 RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQIL-HVEQEVVGDDTTALQCVLNTDIERTQLLEE 268 (718)
T ss_pred CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEE-EEeccCCCCCCCHHHHHHHhhHHHHHHHHH
Confidence 45888999999999999999999999999999997632 110 010 111110 00000
Q ss_pred -------------------------------------------------------HHHHHHhcCCc-hhhhhccchhHHH
Q 002722 699 -------------------------------------------------------RDCIFARVGAG-DCQLRGVSTFMQE 722 (888)
Q Consensus 699 -------------------------------------------------------~d~i~~~~~~~-d~~~~~~s~f~~e 722 (888)
+..++..+|.. +......+++|++
T Consensus 269 ~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~~~LSgG 348 (718)
T PLN03073 269 EAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGG 348 (718)
T ss_pred HHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhCchhhCCHH
Confidence 01122233332 2234456788888
Q ss_pred HHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 723 MLETASILKG-ATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 723 ~~~~~~il~~-~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
+++...+++. +.+|+++||||||+|+|+.....+ . +.+.+ .+.++|++||+.++. .++++
T Consensus 349 ~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l-~---~~L~~-~~~tviivsHd~~~l~~~~d~ 410 (718)
T PLN03073 349 WRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWL-E---TYLLK-WPKTFIVVSHAREFLNTVVTD 410 (718)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHH-H---HHHHH-cCCEEEEEECCHHHHHHhCCE
Confidence 8777666654 789999999999999999876665 3 34444 478999999998765 45666
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-13 Score=178.35 Aligned_cols=155 Identities=13% Similarity=0.102 Sum_probs=108.2
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh-------------------hhcCcccccccc---cccH--
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-------------------AQVGSFVPCDRA---SISV-- 698 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~-------------------a~~g~~vp~~~~---~~~~-- 698 (888)
..+.+++++.+.+|++++|+|||||||||||+++++.... .+.-.|+|+... .+++
T Consensus 893 ~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E 972 (1470)
T PLN03140 893 LQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRE 972 (1470)
T ss_pred ceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHH
Confidence 3688999999999999999999999999999999875310 011124443321 1111
Q ss_pred ----------------------HHHHHHhcCCchhhhhc-----cchhHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCCh
Q 002722 699 ----------------------RDCIFARVGAGDCQLRG-----VSTFMQEMLETASIL-KGATDRSLIIIDELGRGTST 750 (888)
Q Consensus 699 ----------------------~d~i~~~~~~~d~~~~~-----~s~f~~e~~~~~~il-~~~~~~slvllDEp~~gtd~ 750 (888)
++.++..+|+.+..... ...+|+++++...|. ..+.+|++++|||||+|||+
T Consensus 973 ~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~ 1052 (1470)
T PLN03140 973 SLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1052 (1470)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Confidence 23345555654433222 146777776665554 45899999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCeEEEEecChh--HHHHhhhccccccccccccEeE-EEEEEE
Q 002722 751 YDGFGLAWAICEHLVEEIRAPTLFATHFHE--LTALAHENANEFNTKQMVGVAN-YHVSAH 808 (888)
Q Consensus 751 ~~~~~i~~~il~~l~~~~~~~~l~~TH~~~--l~~~~~~~~~~~~~~~~~~v~~-~~~~~~ 808 (888)
.....+ ..+++.+++ .|.++|++||+++ +.+++|+ +-.+.+ +++.+.
T Consensus 1053 ~~a~~v-~~~L~~l~~-~g~tVI~t~Hq~~~~i~~~~D~---------vllL~~gG~~v~~ 1102 (1470)
T PLN03140 1053 RAAAIV-MRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDE---------LLLMKRGGQVIYS 1102 (1470)
T ss_pred HHHHHH-HHHHHHHHH-CCCEEEEEeCCCCHHHHHhCCE---------EEEEcCCCEEEEE
Confidence 988888 667777877 5899999999975 4577777 555654 566544
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.48 E-value=5e-13 Score=164.09 Aligned_cols=150 Identities=15% Similarity=0.032 Sum_probs=102.8
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh--------------------hhcCccccccccc--ccHHH
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRAS--ISVRD 700 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~--------------------a~~g~~vp~~~~~--~~~~d 700 (888)
..+.++++|++++|+.++|+||||||||||+|.++++..+ .+.-++||++..- -++.+
T Consensus 492 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~e 571 (710)
T TIGR03796 492 PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRD 571 (710)
T ss_pred CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHH
Confidence 4689999999999999999999999999999999765311 1122466665421 11111
Q ss_pred H---------------HHHhcCCch-----------hhhhccchhHHHHHHHHH-HHHhCCCCcEEEEeCCCCCCChhhH
Q 002722 701 C---------------IFARVGAGD-----------CQLRGVSTFMQEMLETAS-ILKGATDRSLIIIDELGRGTSTYDG 753 (888)
Q Consensus 701 ~---------------i~~~~~~~d-----------~~~~~~s~f~~e~~~~~~-il~~~~~~slvllDEp~~gtd~~~~ 753 (888)
. .+...|+.+ .+..+-..+|++++|... +...+.+|+++||||||+++|+...
T Consensus 572 Ni~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te 651 (710)
T TIGR03796 572 NLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETE 651 (710)
T ss_pred HhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHH
Confidence 1 122223322 223333457766655544 4445889999999999999999887
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhhccccccccccccEeEEEEE
Q 002722 754 FGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
..+... +.+ .++|+|++||.++....+|+ +-.+.++++.
T Consensus 652 ~~i~~~----l~~-~~~T~IiitHrl~~i~~~D~---------Iivl~~G~i~ 690 (710)
T TIGR03796 652 KIIDDN----LRR-RGCTCIIVAHRLSTIRDCDE---------IIVLERGKVV 690 (710)
T ss_pred HHHHHH----HHh-cCCEEEEEecCHHHHHhCCE---------EEEEeCCEEE
Confidence 777433 334 48999999999998888887 5556665554
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2e-13 Score=129.90 Aligned_cols=142 Identities=18% Similarity=0.211 Sum_probs=102.5
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHh-------hhhcCcc----------------------------
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL-------MAQVGSF---------------------------- 688 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~-------~a~~g~~---------------------------- 688 (888)
+|.++++|+++.|+++++-||+|+||||+||++-.... ..|.|.+
T Consensus 25 pV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRv 104 (235)
T COG4778 25 PVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRV 104 (235)
T ss_pred eeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHh
Confidence 67789999999999999999999999999999743211 1111211
Q ss_pred cccccc-----------c------ccHHHHHHHhcCCchhhh-hccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCC
Q 002722 689 VPCDRA-----------S------ISVRDCIFARVGAGDCQL-RGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTS 749 (888)
Q Consensus 689 vp~~~~-----------~------~~~~d~i~~~~~~~d~~~-~~~s~f~~e~~~~~~il~~-~~~~slvllDEp~~gtd 749 (888)
+|.-.+ . ......+++|+...+.+. -..+|||++.+|..+|.+. +.+.+++||||||+.+|
T Consensus 105 iPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLD 184 (235)
T COG4778 105 IPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLD 184 (235)
T ss_pred ccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCccccc
Confidence 111000 0 011234778888766654 3468999888777777764 78999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHH-Hhhh
Q 002722 750 TYDGFGLAWAICEHLVEEIRAPTLFATHFHELTA-LAHE 787 (888)
Q Consensus 750 ~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~-~~~~ 787 (888)
..+...+ ..++..-+. .|+.++=+-||.+..+ .+++
T Consensus 185 a~Nr~vV-veli~e~Ka-~GaAlvGIFHDeevre~vadR 221 (235)
T COG4778 185 ATNRAVV-VELIREAKA-RGAALVGIFHDEEVREAVADR 221 (235)
T ss_pred ccchHHH-HHHHHHHHh-cCceEEEeeccHHHHHHHhhh
Confidence 9988887 445555444 6999999999998874 6666
|
|
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.7e-13 Score=142.14 Aligned_cols=73 Identities=11% Similarity=0.051 Sum_probs=55.6
Q ss_pred hhhccchhHHHHHHHHHHHHhC-----CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhh
Q 002722 712 QLRGVSTFMQEMLETASILKGA-----TDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAH 786 (888)
Q Consensus 712 ~~~~~s~f~~e~~~~~~il~~~-----~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~ 786 (888)
.....+.++.++++...+.+.. .+|+++++|||++|+|+.....+ +.++..+.+ +.++|++||++++..+++
T Consensus 121 ~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l-~~~l~~~~~--~~~~iivs~~~~~~~~~d 197 (212)
T cd03274 121 SWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIV-ANYIKERTK--NAQFIVISLRNNMFELAD 197 (212)
T ss_pred cccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHH-HHHHHHHcC--CCEEEEEECcHHHHHhCC
Confidence 3334566777777766666532 35799999999999999888877 666677653 678999999998888887
Q ss_pred h
Q 002722 787 E 787 (888)
Q Consensus 787 ~ 787 (888)
+
T Consensus 198 ~ 198 (212)
T cd03274 198 R 198 (212)
T ss_pred E
Confidence 6
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.7e-13 Score=156.15 Aligned_cols=142 Identities=15% Similarity=0.063 Sum_probs=98.1
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh--------------------hhcCccccccccc--ccH--
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRAS--ISV-- 698 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~--------------------a~~g~~vp~~~~~--~~~-- 698 (888)
.++.++++|++++|+.++|+||||||||||+|.++++.-+ .+.-.+||++..- -++
T Consensus 335 ~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~ 414 (529)
T TIGR02857 335 APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAE 414 (529)
T ss_pred cccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHH
Confidence 3688999999999999999999999999999999764311 1112355554311 111
Q ss_pred -------------HHHHHHhcCCchh-----------hhhccchhHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhH
Q 002722 699 -------------RDCIFARVGAGDC-----------QLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYDG 753 (888)
Q Consensus 699 -------------~d~i~~~~~~~d~-----------~~~~~s~f~~e~~~~~~il-~~~~~~slvllDEp~~gtd~~~~ 753 (888)
+...+...++.+. +..+...+|++++|...+. ..+.+|+++||||||+++|+...
T Consensus 415 Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~ 494 (529)
T TIGR02857 415 NIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETE 494 (529)
T ss_pred HHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHH
Confidence 1122333343332 2233456776666655554 45789999999999999999998
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 754 FGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
..+... +..+. .++++|++||+++....+|+
T Consensus 495 ~~i~~~-l~~~~--~~~t~i~itH~~~~~~~~d~ 525 (529)
T TIGR02857 495 ALVTEA-LRALA--QGRTVLLVTHRLALAERADR 525 (529)
T ss_pred HHHHHH-HHHhc--CCCEEEEEecCHHHHHhCCE
Confidence 888444 44443 47999999999988777665
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.5e-12 Score=159.25 Aligned_cols=150 Identities=14% Similarity=-0.006 Sum_probs=101.0
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh--------------------hhcCccccccccc--ccHH-
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRAS--ISVR- 699 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~--------------------a~~g~~vp~~~~~--~~~~- 699 (888)
.++.++++|++.+|+.++|+|||||||||+++.++++.-+ .+.-.+||++..- -++.
T Consensus 494 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIre 573 (711)
T TIGR00958 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRE 573 (711)
T ss_pred CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHH
Confidence 4789999999999999999999999999999999765321 1122456655421 1111
Q ss_pred --------------HHHHHhcCCchh-----------hhhccchhHHHHHHHHH-HHHhCCCCcEEEEeCCCCCCChhhH
Q 002722 700 --------------DCIFARVGAGDC-----------QLRGVSTFMQEMLETAS-ILKGATDRSLIIIDELGRGTSTYDG 753 (888)
Q Consensus 700 --------------d~i~~~~~~~d~-----------~~~~~s~f~~e~~~~~~-il~~~~~~slvllDEp~~gtd~~~~ 753 (888)
.......++.+. +..+-..+|++.+|... +.....+|+++||||||+++|+...
T Consensus 574 NI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te 653 (711)
T TIGR00958 574 NIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECE 653 (711)
T ss_pred HHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHH
Confidence 122333333322 22233456666555544 4445789999999999999999765
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhhccccccccccccEeEEEEE
Q 002722 754 FGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
..+ .. .....++|+|++||.++..+.+|+ +-.+.++++.
T Consensus 654 ~~i-~~----~~~~~~~TvIiItHrl~~i~~aD~---------IivL~~G~iv 692 (711)
T TIGR00958 654 QLL-QE----SRSRASRTVLLIAHRLSTVERADQ---------ILVLKKGSVV 692 (711)
T ss_pred HHH-HH----hhccCCCeEEEEeccHHHHHhCCE---------EEEEECCEEE
Confidence 555 33 222257899999999998888887 5566666654
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-12 Score=160.30 Aligned_cols=151 Identities=15% Similarity=0.084 Sum_probs=102.5
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh--------------------hhcCccccccccc--ccH--
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRAS--ISV-- 698 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~--------------------a~~g~~vp~~~~~--~~~-- 698 (888)
..+.++++|++.+|+.++|+||||||||||+|.++++.-+ .+.-+|||++..- -++
T Consensus 487 ~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~e 566 (708)
T TIGR01193 487 SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILE 566 (708)
T ss_pred CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHH
Confidence 4688999999999999999999999999999999765321 1122356655311 011
Q ss_pred --------------HHHHHHhcCCchh-----------hhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhh
Q 002722 699 --------------RDCIFARVGAGDC-----------QLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYD 752 (888)
Q Consensus 699 --------------~d~i~~~~~~~d~-----------~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~ 752 (888)
+.......++.+. +..+-..+|++++|...+++ .+.+|+++||||||+++|+..
T Consensus 567 Ni~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~t 646 (708)
T TIGR01193 567 NLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTIT 646 (708)
T ss_pred HHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHH
Confidence 1122222333322 22333557766666555444 578999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhhccccccccccccEeEEEEE
Q 002722 753 GFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 753 ~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
...+...+ ..+ .++|+|++||.++....+|+ +-.+.++++.
T Consensus 647 e~~i~~~L-~~~---~~~T~IiitHr~~~~~~~D~---------i~~l~~G~i~ 687 (708)
T TIGR01193 647 EKKIVNNL-LNL---QDKTIIFVAHRLSVAKQSDK---------IIVLDHGKII 687 (708)
T ss_pred HHHHHHHH-HHh---cCCEEEEEecchHHHHcCCE---------EEEEECCEEE
Confidence 77774444 333 37899999999998888887 5555555543
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.2e-13 Score=176.06 Aligned_cols=155 Identities=12% Similarity=0.111 Sum_probs=108.3
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHh---h--h--------------hcCcccccccc---cccH--
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL---M--A--------------QVGSFVPCDRA---SISV-- 698 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~---~--a--------------~~g~~vp~~~~---~~~~-- 698 (888)
..+.+++++.+.+|++++|+|||||||||||+++++... . + +.-.|||++.. ..++
T Consensus 776 ~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~E 855 (1394)
T TIGR00956 776 RVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRE 855 (1394)
T ss_pred cEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHHH
Confidence 468999999999999999999999999999999987642 1 1 11135554321 1111
Q ss_pred ----------------------HHHHHHhcCCchhhhhccc----hhHHHHHHHHHHH-HhCCCCc-EEEEeCCCCCCCh
Q 002722 699 ----------------------RDCIFARVGAGDCQLRGVS----TFMQEMLETASIL-KGATDRS-LIIIDELGRGTST 750 (888)
Q Consensus 699 ----------------------~d~i~~~~~~~d~~~~~~s----~f~~e~~~~~~il-~~~~~~s-lvllDEp~~gtd~ 750 (888)
++.++..+|..+....... .+|+++++...|. ..+.+|+ +++|||||+|+|+
T Consensus 856 ~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~ 935 (1394)
T TIGR00956 856 SLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDS 935 (1394)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCH
Confidence 2344555555443333222 5777766665555 4578885 9999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCeEEEEecChhH--HHHhhhccccccccccccEeEE-EEEEE
Q 002722 751 YDGFGLAWAICEHLVEEIRAPTLFATHFHEL--TALAHENANEFNTKQMVGVANY-HVSAH 808 (888)
Q Consensus 751 ~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l--~~~~~~~~~~~~~~~~~~v~~~-~~~~~ 808 (888)
.....+ ..+++.+++ .|+++|++||+++. .+.+|+ +-.+.++ ++.+.
T Consensus 936 ~~~~~i-~~~L~~la~-~g~tvI~t~H~~~~~~~~~~D~---------vl~L~~GG~iv~~ 985 (1394)
T TIGR00956 936 QTAWSI-CKLMRKLAD-HGQAILCTIHQPSAILFEEFDR---------LLLLQKGGQTVYF 985 (1394)
T ss_pred HHHHHH-HHHHHHHHH-cCCEEEEEecCCCHHHHHhcCE---------EEEEcCCCEEEEE
Confidence 988888 677777776 58999999999864 356776 5556665 66544
|
|
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.9e-13 Score=140.92 Aligned_cols=137 Identities=16% Similarity=0.026 Sum_probs=86.3
Q ss_pred CCccccCC-CCeEEEEEecCCCChhHHHhhhhHHHhh------------hhcC--------cccccccc---------cc
Q 002722 647 NDCKLIRG-KSWFQIITGPNMGGKSTFIRQVGVNILM------------AQVG--------SFVPCDRA---------SI 696 (888)
Q Consensus 647 n~~~l~~~-~~~~~~itGpNg~GKSTllr~i~~~~~~------------a~~g--------~~vp~~~~---------~~ 696 (888)
++++|... +|++++|+|||||||||+|+.|....+- ..+. .++..... .+
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~r~~gl 97 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKYRVERSRGL 97 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeEEEEEEecCC
Confidence 45566433 4789999999999999999998742110 0000 00000000 01
Q ss_pred cH--HHH-HHHh-cCCchhhhhccchhHHHHHHHHHHHHhC-----------CCCcEEEEeCCCCCCChhhHHHHHHHHH
Q 002722 697 SV--RDC-IFAR-VGAGDCQLRGVSTFMQEMLETASILKGA-----------TDRSLIIIDELGRGTSTYDGFGLAWAIC 761 (888)
Q Consensus 697 ~~--~d~-i~~~-~~~~d~~~~~~s~f~~e~~~~~~il~~~-----------~~~slvllDEp~~gtd~~~~~~i~~~il 761 (888)
.. +.+ +... .+..+.+.....++++++++...+.+.. .+|+++|+|||++|+|+.....+ ..++
T Consensus 98 ~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~-~~~l 176 (213)
T cd03279 98 DYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAV-ATAL 176 (213)
T ss_pred CHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHH-HHHH
Confidence 10 111 1111 2234455666778888777765555442 25789999999999999888888 5666
Q ss_pred HHHHhcCCCeEEEEecChhHHHHh
Q 002722 762 EHLVEEIRAPTLFATHFHELTALA 785 (888)
Q Consensus 762 ~~l~~~~~~~~l~~TH~~~l~~~~ 785 (888)
+.+.+ .+.++|++||++++....
T Consensus 177 ~~~~~-~~~tii~itH~~~~~~~~ 199 (213)
T cd03279 177 ELIRT-ENRMVGVISHVEELKERI 199 (213)
T ss_pred HHHHh-CCCEEEEEECchHHHHhh
Confidence 77765 488999999999876543
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.44 E-value=6e-13 Score=148.09 Aligned_cols=155 Identities=17% Similarity=0.038 Sum_probs=107.2
Q ss_pred CcccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhh--------------------cCccccccc-------
Q 002722 641 WVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ--------------------VGSFVPCDR------- 693 (888)
Q Consensus 641 ~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~--------------------~g~~vp~~~------- 693 (888)
....+.++++|+..+|+-++|+|++||||||++..+++.....| .-++++++.
T Consensus 349 ~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tl 428 (573)
T COG4987 349 QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTL 428 (573)
T ss_pred CccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHH
Confidence 34579999999999999999999999999999999986322111 112222221
Q ss_pred ----------ccccHHHHHHHhcCCchhhh-----------hccchhH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChh
Q 002722 694 ----------ASISVRDCIFARVGAGDCQL-----------RGVSTFM-QEMLETASILKGATDRSLIIIDELGRGTSTY 751 (888)
Q Consensus 694 ----------~~~~~~d~i~~~~~~~d~~~-----------~~~s~f~-~e~~~~~~il~~~~~~slvllDEp~~gtd~~ 751 (888)
+.-.-+-.++..+|..+-+. .+-..|| +|.++++.+.....+.+++||||||-|+|+.
T Consensus 429 r~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~ 508 (573)
T COG4987 429 RDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPI 508 (573)
T ss_pred HHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChh
Confidence 00011123455555544332 2234555 4555665555567899999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhhccccccccccccEeEEEEEE
Q 002722 752 DGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSA 807 (888)
Q Consensus 752 ~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (888)
.-..+..-+.+++. |+++|++||..--.+.+|+ +..+.|++...
T Consensus 509 TE~~vL~ll~~~~~---~kTll~vTHrL~~le~~dr---------Iivl~~Gkiie 552 (573)
T COG4987 509 TERQVLALLFEHAE---GKTLLMVTHRLRGLERMDR---------IIVLDNGKIIE 552 (573)
T ss_pred hHHHHHHHHHHHhc---CCeEEEEecccccHhhcCE---------EEEEECCeeee
Confidence 99999665555543 7899999999888888888 66777777654
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.7e-13 Score=131.94 Aligned_cols=139 Identities=18% Similarity=0.190 Sum_probs=96.2
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhc-----------------Ccc---ccccc-----cccc
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQV-----------------GSF---VPCDR-----ASIS 697 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~-----------------g~~---vp~~~-----~~~~ 697 (888)
+.+.+.+++++..|+|+.|+|.||||||||++.+++-..+... +.+ |.++. ..++
T Consensus 19 k~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lT 98 (263)
T COG1101 19 KRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELT 98 (263)
T ss_pred HHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCccccc
Confidence 5789999999999999999999999999999999864322110 000 00000 0111
Q ss_pred HHH---------------------------HHHHh--cCCchhhhhccchhHHHHHHHHH-HHHhCCCCcEEEEeCCCCC
Q 002722 698 VRD---------------------------CIFAR--VGAGDCQLRGVSTFMQEMLETAS-ILKGATDRSLIIIDELGRG 747 (888)
Q Consensus 698 ~~d---------------------------~i~~~--~~~~d~~~~~~s~f~~e~~~~~~-il~~~~~~slvllDEp~~g 747 (888)
+.. .-+++ .|....+......||++.+|... ++..+.+|.+++|||=|+.
T Consensus 99 ieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAA 178 (263)
T COG1101 99 IEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAA 178 (263)
T ss_pred HHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhc
Confidence 111 11222 23455566666778887777644 4455889999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH
Q 002722 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT 782 (888)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~ 782 (888)
+||.....+.. .-+.+.++.+.|++++||.++-+
T Consensus 179 LDPkta~~vm~-lT~kiV~~~klTtlMVTHnm~~A 212 (263)
T COG1101 179 LDPKTAEFVME-LTAKIVEEHKLTTLMVTHNMEDA 212 (263)
T ss_pred CCcchHHHHHH-HHHHHHHhcCCceEEEeccHHHH
Confidence 99998888844 44555555789999999998765
|
|
| >PF05190 MutS_IV: MutS family domain IV C-terminus | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.5e-12 Score=116.44 Aligned_cols=92 Identities=30% Similarity=0.549 Sum_probs=85.4
Q ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccceeeeecceeeEEEEEecCCccccccccCccEEEEEEecceEE
Q 002722 465 SYDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVK 544 (888)
Q Consensus 465 ~~d~~Ld~lr~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~gy~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (888)
|||++||++++.++++.++|+++++++++.++++ .+++.|+++.||+|+||++....+| .+ |+.++++++++|
T Consensus 1 g~d~~Ld~~~~~~~~~~~~l~~~~~~~~~~~~~~---~lk~~~~~~~gy~i~v~~~~~~~~p--~~--~~~~~~~k~~~r 73 (92)
T PF05190_consen 1 GFDEELDELREEYEEIEEELEELLEEIRKKLGIP---SLKLVYIPKRGYLIEVPKSDEKKLP--KD--FIIVSSTKSGVR 73 (92)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-T---TBEEEEETTTEEEEEEETCCGGGST--TT--EEEEEEESSEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---cEEEEEcCceEEEEEEEccccccCC--Cc--eEEEEEEcCcEE
Confidence 7999999999999999999999999999999996 8999999999999999998877776 34 999999999999
Q ss_pred EEChhHHHHHHHHHHHHHH
Q 002722 545 FTNTKLKKLGDQYQKVLEE 563 (888)
Q Consensus 545 ~~t~~l~~l~~~~~~~~~~ 563 (888)
|+|++|++|+.++.+++++
T Consensus 74 f~t~~l~~L~~~~~~~~ee 92 (92)
T PF05190_consen 74 FTTPELKELNEELKEAEEE 92 (92)
T ss_dssp EECHHHHHHHHHHHHHHHH
T ss_pred EECHHHHHHHHHHHHHhcC
Confidence 9999999999999998864
|
; InterPro: IPR007861 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the clamp domain (domain 4) found in proteins of the MutS family. The clamp domain is inserted within the core domain at the top of the lever helices. It has a beta-sheet structure [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B 1WBD_A 1WB9_A 3K0S_A 1OH6_A .... |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.6e-13 Score=174.71 Aligned_cols=154 Identities=15% Similarity=0.145 Sum_probs=107.1
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh-------hcCccccccccc--ccHHHHH-----------
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA-------QVGSFVPCDRAS--ISVRDCI----------- 702 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a-------~~g~~vp~~~~~--~~~~d~i----------- 702 (888)
..+.++++|++.+|++++|+|||||||||||+++++..-.. ..-.|+|++..- .++.+.|
T Consensus 673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~ 752 (1560)
T PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARL 752 (1560)
T ss_pred ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHH
Confidence 46888999999999999999999999999999998754221 112355554311 1111111
Q ss_pred ------------HHhc--CCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhc
Q 002722 703 ------------FARV--GAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEE 767 (888)
Q Consensus 703 ------------~~~~--~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~ 767 (888)
+..+ |....+......+|+++++...+.+ .+.+|+++|||||++++|+..+..+...++....
T Consensus 753 ~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~-- 830 (1560)
T PTZ00243 753 ADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGAL-- 830 (1560)
T ss_pred HHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhh--
Confidence 1122 3333344556678877777655555 4789999999999999999988887555543332
Q ss_pred CCCeEEEEecChhHHHHhhhccccccccccccEeEEEEEE
Q 002722 768 IRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSA 807 (888)
Q Consensus 768 ~~~~~l~~TH~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (888)
.|+++|++||++++...+|+ +..+.++++..
T Consensus 831 ~~~TvIlvTH~~~~~~~ad~---------ii~l~~G~i~~ 861 (1560)
T PTZ00243 831 AGKTRVLATHQVHVVPRADY---------VVALGDGRVEF 861 (1560)
T ss_pred CCCEEEEEeCCHHHHHhCCE---------EEEEECCEEEE
Confidence 37899999999998888877 55566666543
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.9e-13 Score=125.31 Aligned_cols=139 Identities=15% Similarity=0.133 Sum_probs=100.8
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHh----------------------hhhcCcc------------
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL----------------------MAQVGSF------------ 688 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~----------------------~a~~g~~------------ 688 (888)
....-++++++.+|+++-|.||+||||||||--+++..- -.|+|..
T Consensus 15 ~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsV 94 (213)
T COG4136 15 SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSV 94 (213)
T ss_pred ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeeccccccccccc
Confidence 344447899999999999999999999999998765321 1123321
Q ss_pred -------ccccc---ccccHHHHHHHhcCCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHH
Q 002722 689 -------VPCDR---ASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLA 757 (888)
Q Consensus 689 -------vp~~~---~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~ 757 (888)
+|+.- ++-...+.-++++|...-..+...+++++.+....+++ ....|.+++||||++.+|..-+....
T Consensus 95 g~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR 174 (213)
T COG4136 95 GQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFR 174 (213)
T ss_pred ccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHH
Confidence 11110 12223445677888877777778888887766555554 46899999999999999998877776
Q ss_pred HHHHHHHHhcCCCeEEEEecChhHH
Q 002722 758 WAICEHLVEEIRAPTLFATHFHELT 782 (888)
Q Consensus 758 ~~il~~l~~~~~~~~l~~TH~~~l~ 782 (888)
.-+...+.. .|.+++.+|||++-+
T Consensus 175 ~wVFs~~r~-agiPtv~VTHD~~Dv 198 (213)
T COG4136 175 QWVFSEVRA-AGIPTVQVTHDLQDV 198 (213)
T ss_pred HHHHHHHHh-cCCCeEEEecccccC
Confidence 666677766 699999999998643
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.4e-13 Score=173.79 Aligned_cols=155 Identities=14% Similarity=0.186 Sum_probs=105.9
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh--------------------hcCcccccccc---cccH--
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA--------------------QVGSFVPCDRA---SISV-- 698 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a--------------------~~g~~vp~~~~---~~~~-- 698 (888)
.|.+++++.+.+|++++|+||||||||||||++++..... +.-.|+++... .+++
T Consensus 179 ~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E 258 (1470)
T PLN03140 179 TILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKE 258 (1470)
T ss_pred eeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHH
Confidence 4567999999999999999999999999999998753211 00123333211 0111
Q ss_pred -----------------------------------------------------HHHHHHhcCCchhh-----hhccchhH
Q 002722 699 -----------------------------------------------------RDCIFARVGAGDCQ-----LRGVSTFM 720 (888)
Q Consensus 699 -----------------------------------------------------~d~i~~~~~~~d~~-----~~~~s~f~ 720 (888)
++.++..+|+.+.. ......+|
T Consensus 259 tL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglS 338 (1470)
T PLN03140 259 TLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGIS 338 (1470)
T ss_pred HHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCC
Confidence 23344555554321 12234566
Q ss_pred HHHHHHHH-HHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecCh--hHHHHhhhcccccccccc
Q 002722 721 QEMLETAS-ILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFH--ELTALAHENANEFNTKQM 797 (888)
Q Consensus 721 ~e~~~~~~-il~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~--~l~~~~~~~~~~~~~~~~ 797 (888)
+++++... +...+.+|+++++|||++|||+.....+ ..+++.+++..|.++|++||++ ++.+++|+ +
T Consensus 339 GGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i-~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~---------v 408 (1470)
T PLN03140 339 GGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQI-VKCLQQIVHLTEATVLMSLLQPAPETFDLFDD---------I 408 (1470)
T ss_pred cccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHH-HHHHHHHHHhcCCEEEEEecCCCHHHHHHhhe---------E
Confidence 55555544 4445789999999999999999999999 5566667653589999999984 66788888 6
Q ss_pred ccEeEEEEEEE
Q 002722 798 VGVANYHVSAH 808 (888)
Q Consensus 798 ~~v~~~~~~~~ 808 (888)
-.+.++++.+.
T Consensus 409 ilL~~G~ivy~ 419 (1470)
T PLN03140 409 ILLSEGQIVYQ 419 (1470)
T ss_pred EEeeCceEEEe
Confidence 66777777654
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.8e-13 Score=146.91 Aligned_cols=138 Identities=18% Similarity=0.180 Sum_probs=94.8
Q ss_pred CcccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHH---hhh---hcCcccccccc--------------------
Q 002722 641 WVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI---LMA---QVGSFVPCDRA-------------------- 694 (888)
Q Consensus 641 ~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~---~~a---~~g~~vp~~~~-------------------- 694 (888)
|++.+.+..+++...|+-++|+||||+|||||||+|+.-. +.. -.|+++|+...
T Consensus 91 G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~ 170 (582)
T KOG0062|consen 91 GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLA 170 (582)
T ss_pred cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhc
Confidence 5567788888888889999999999999999999998611 111 02555553221
Q ss_pred c---ccHHHHHHHhcCCc-hhhhhccchhHHHHHHH-HHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCC
Q 002722 695 S---ISVRDCIFARVGAG-DCQLRGVSTFMQEMLET-ASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIR 769 (888)
Q Consensus 695 ~---~~~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~-~~il~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~ 769 (888)
. ..+.++++.-+|-. +-......+||++.+-. +.+.+...+|+|+||||||+.||... ++| +-+||.. .+
T Consensus 171 ~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~a---v~W-Le~yL~t-~~ 245 (582)
T KOG0062|consen 171 GLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVA---VAW-LENYLQT-WK 245 (582)
T ss_pred cchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHH---HHH-HHHHHhh-CC
Confidence 0 11122345556643 34556677888886543 44444578999999999999998854 444 4567776 67
Q ss_pred CeEEEEecChhHHH
Q 002722 770 APTLFATHFHELTA 783 (888)
Q Consensus 770 ~~~l~~TH~~~l~~ 783 (888)
.|+|++|||..+.+
T Consensus 246 ~T~liVSHDr~FLn 259 (582)
T KOG0062|consen 246 ITSLIVSHDRNFLN 259 (582)
T ss_pred ceEEEEeccHHHHH
Confidence 89999999976653
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.6e-13 Score=172.37 Aligned_cols=155 Identities=12% Similarity=0.037 Sum_probs=106.0
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHh---h---h-----------------hcCcccccccc---ccc
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL---M---A-----------------QVGSFVPCDRA---SIS 697 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~---~---a-----------------~~g~~vp~~~~---~~~ 697 (888)
.+.+++++.+.+|++++|+||||||||||||++++... . + +.-.|++++.. .++
T Consensus 75 ~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lT 154 (1394)
T TIGR00956 75 DILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLT 154 (1394)
T ss_pred eeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCC
Confidence 45678999999999999999999999999999987530 0 0 00124443211 011
Q ss_pred H-----------------------------HHHHHHhcCCchhhhh-----ccchhHHHHHHHHH-HHHhCCCCcEEEEe
Q 002722 698 V-----------------------------RDCIFARVGAGDCQLR-----GVSTFMQEMLETAS-ILKGATDRSLIIID 742 (888)
Q Consensus 698 ~-----------------------------~d~i~~~~~~~d~~~~-----~~s~f~~e~~~~~~-il~~~~~~slvllD 742 (888)
+ .+.++..+|+.+.... ....+|+++++... +...+++|+++++|
T Consensus 155 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllD 234 (1394)
T TIGR00956 155 VGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWD 234 (1394)
T ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEe
Confidence 1 1234555565443322 12346655555544 44558899999999
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecCh--hHHHHhhhccccccccccccEeEEEEEEE
Q 002722 743 ELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFH--ELTALAHENANEFNTKQMVGVANYHVSAH 808 (888)
Q Consensus 743 Ep~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~--~l~~~~~~~~~~~~~~~~~~v~~~~~~~~ 808 (888)
|||+|+|+.....+ ..+++.+++..|.++|++||++ ++.+++|+ +-.+.++++.+.
T Consensus 235 EPTsgLD~~~~~~i-~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~---------v~~L~~G~iv~~ 292 (1394)
T TIGR00956 235 NATRGLDSATALEF-IRALKTSANILDTTPLVAIYQCSQDAYELFDK---------VIVLYEGYQIYF 292 (1394)
T ss_pred CCCCCcCHHHHHHH-HHHHHHHHHhcCCEEEEEecCCCHHHHHhhce---------EEEEeCCeEEEE
Confidence 99999999999998 6677777764589999999995 46678887 666677776554
|
|
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-12 Score=139.36 Aligned_cols=71 Identities=11% Similarity=0.077 Sum_probs=55.0
Q ss_pred hccchhHHHHHHHHHHHHhC-----CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 714 RGVSTFMQEMLETASILKGA-----TDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 714 ~~~s~f~~e~~~~~~il~~~-----~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
.....+|+++++...+.+.. .+|+++|+|||++|+|+.....+ +..+..+.+ +.++|++||..++..++++
T Consensus 154 ~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~-~~~l~~~~~--~~~ii~~~h~~~~~~~~d~ 229 (243)
T cd03272 154 QEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAV-ANMIKELSD--GAQFITTTFRPELLEVADK 229 (243)
T ss_pred ccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHH-HHHHHHHhC--CCEEEEEecCHHHHhhCCE
Confidence 45567888887776665543 35799999999999999988887 555666653 7888999999888888776
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.3e-13 Score=136.71 Aligned_cols=74 Identities=16% Similarity=0.002 Sum_probs=54.8
Q ss_pred hhccchhHHHHHHH-------HHHHHhCCCCcEEEEeCCCCCCChhhHH-HHHHHHHHHHHhcCCCeEEEEecChhHHHH
Q 002722 713 LRGVSTFMQEMLET-------ASILKGATDRSLIIIDELGRGTSTYDGF-GLAWAICEHLVEEIRAPTLFATHFHELTAL 784 (888)
Q Consensus 713 ~~~~s~f~~e~~~~-------~~il~~~~~~slvllDEp~~gtd~~~~~-~i~~~il~~l~~~~~~~~l~~TH~~~l~~~ 784 (888)
....+.+++++++. +.+...+.+|+++|+|||++|+|+.... .+ ..++..+.+..+.++|++||++++...
T Consensus 110 ~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l-~~~l~~~~~~~~~~iiiitH~~~~~~~ 188 (204)
T cd03240 110 LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESL-AEIIEERKSQKNFQLIVITHDEELVDA 188 (204)
T ss_pred hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHH-HHHHHHHHhccCCEEEEEEecHHHHhh
Confidence 44556777766663 2233346899999999999999998888 77 566666665237899999999988766
Q ss_pred hhh
Q 002722 785 AHE 787 (888)
Q Consensus 785 ~~~ 787 (888)
+++
T Consensus 189 ~d~ 191 (204)
T cd03240 189 ADH 191 (204)
T ss_pred CCE
Confidence 655
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-12 Score=169.15 Aligned_cols=71 Identities=14% Similarity=0.111 Sum_probs=56.1
Q ss_pred cchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 716 VSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 716 ~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
.+.+|++++|...|.+ .+.+|+++||||||+++|+.....+ ...++.+.+..|.++|++||+++..+.+|+
T Consensus 577 g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i-~~~L~~~~~~~g~TvIiIsHrls~i~~aD~ 648 (1466)
T PTZ00265 577 ASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLV-QKTINNLKGNENRITIIIAHRLSTIRYANT 648 (1466)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHH-HHHHHHHhhcCCCEEEEEeCCHHHHHhCCE
Confidence 4567777777655555 4789999999999999999888877 555566654248999999999988887776
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.4e-12 Score=155.17 Aligned_cols=157 Identities=16% Similarity=0.200 Sum_probs=118.3
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh--------------------hhcCcccccccc--------
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRA-------- 694 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~--------------------a~~g~~vp~~~~-------- 694 (888)
..+.++++....+|++.+|.||.||||||||+++++-..- ..+-+||+++..
T Consensus 43 k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~ 122 (613)
T KOG0061|consen 43 KTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVR 122 (613)
T ss_pred ceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHH
Confidence 5799999999999999999999999999999999754321 122235544331
Q ss_pred -------------------cccHHHHHHHhcCCchhhhhccc-----hh-HHHHHHHHHHHHhCCCCcEEEEeCCCCCCC
Q 002722 695 -------------------SISVRDCIFARVGAGDCQLRGVS-----TF-MQEMLETASILKGATDRSLIIIDELGRGTS 749 (888)
Q Consensus 695 -------------------~~~~~d~i~~~~~~~d~~~~~~s-----~f-~~e~~~~~~il~~~~~~slvllDEp~~gtd 749 (888)
+...++.++..+|..+-...-.. .. .+|.++++.++..+++|+++++||||+|+|
T Consensus 123 EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLD 202 (613)
T KOG0061|consen 123 ETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLD 202 (613)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcc
Confidence 12235567777776532222111 12 278888888999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCCeEEEEecCh--hHHHHhhhccccccccccccEeEEEEEEEEE
Q 002722 750 TYDGFGLAWAICEHLVEEIRAPTLFATHFH--ELTALAHENANEFNTKQMVGVANYHVSAHID 810 (888)
Q Consensus 750 ~~~~~~i~~~il~~l~~~~~~~~l~~TH~~--~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 810 (888)
...+..+ ..+++.++++ |++||++-|.+ ++.++.|+ +--+.++++.+...
T Consensus 203 S~sA~~v-v~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~---------l~lLs~G~~vy~G~ 254 (613)
T KOG0061|consen 203 SFSALQV-VQLLKRLARS-GRTVICTIHQPSSELFELFDK---------LLLLSEGEVVYSGS 254 (613)
T ss_pred hhhHHHH-HHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhH---------hhhhcCCcEEEecC
Confidence 9999999 7788888884 99999999995 67788887 66677777776643
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-12 Score=144.01 Aligned_cols=154 Identities=18% Similarity=0.108 Sum_probs=109.7
Q ss_pred cccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh--------------------h-hcCcccccccccc--cH
Q 002722 642 VNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------A-QVGSFVPCDRASI--SV 698 (888)
Q Consensus 642 ~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~--------------------a-~~g~~vp~~~~~~--~~ 698 (888)
.+++.++++|...+|+.++|+||+|||||||.|.+.++... + ++ .|.|++-.-+ ++
T Consensus 348 ~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hi-GYLPQdVeLF~GTI 426 (580)
T COG4618 348 KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHI-GYLPQDVELFDGTI 426 (580)
T ss_pred CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhcccc-CcCcccceecCCcH
Confidence 35889999999999999999999999999999998765321 1 23 3666543110 11
Q ss_pred ------------------------HHHHHHhc--CCchhhhhccchhHHHHHHH-HHHHHhCCCCcEEEEeCCCCCCChh
Q 002722 699 ------------------------RDCIFARV--GAGDCQLRGVSTFMQEMLET-ASILKGATDRSLIIIDELGRGTSTY 751 (888)
Q Consensus 699 ------------------------~d~i~~~~--~~~d~~~~~~s~f~~e~~~~-~~il~~~~~~slvllDEp~~gtd~~ 751 (888)
++.+.-++ |-.-.+..+-+++|++.+|. +.+.....+|.||+||||-+++|..
T Consensus 427 aeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~ 506 (580)
T COG4618 427 AENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSE 506 (580)
T ss_pred HHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchh
Confidence 11122222 23334455567788776665 4445557899999999999999997
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhhccccccccccccEeEEEEEE
Q 002722 752 DGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSA 807 (888)
Q Consensus 752 ~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (888)
.-.+++.++.+ ++. .|+++|++||-+.+...+|+ +-.+.++.+..
T Consensus 507 GE~AL~~Ai~~-~k~-rG~~vvviaHRPs~L~~~Dk---------ilvl~~G~~~~ 551 (580)
T COG4618 507 GEAALAAAILA-AKA-RGGTVVVIAHRPSALASVDK---------ILVLQDGRIAA 551 (580)
T ss_pred HHHHHHHHHHH-HHH-cCCEEEEEecCHHHHhhcce---------eeeecCChHHh
Confidence 77777666654 555 69999999999999998888 66666666644
|
|
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.9e-12 Score=136.99 Aligned_cols=72 Identities=6% Similarity=-0.025 Sum_probs=55.9
Q ss_pred hhccchhHHHHHHHHHHHHhC-----CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 713 LRGVSTFMQEMLETASILKGA-----TDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 713 ~~~~s~f~~e~~~~~~il~~~-----~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
......+++++++...+.+.. .+|+++|+|||++|+|+.....+ ..++..+. .|.++|++||..++.+.+|+
T Consensus 161 ~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~-~~~l~~~~--~g~~ii~iSH~~~~~~~~d~ 237 (251)
T cd03273 161 KESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNI-GRMIKTHF--KGSQFIVVSLKEGMFNNANV 237 (251)
T ss_pred cccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHH-HHHHHHHc--CCCEEEEEECCHHHHHhCCE
Confidence 345567777777766655532 57799999999999999988888 55566664 37899999999998888877
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-12 Score=170.58 Aligned_cols=154 Identities=13% Similarity=0.045 Sum_probs=107.3
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhh-------cCccccccccc--ccHHHHH-----------
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ-------VGSFVPCDRAS--ISVRDCI----------- 702 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~-------~g~~vp~~~~~--~~~~d~i----------- 702 (888)
.++.++++|++.+|++++|+|||||||||||+++++...... .-.|+|++..- -++.+.|
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~ 518 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRY 518 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHH
Confidence 357899999999999999999999999999999987643211 01355554311 1222222
Q ss_pred ---HHhcCCchh-----------hhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhc
Q 002722 703 ---FARVGAGDC-----------QLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEE 767 (888)
Q Consensus 703 ---~~~~~~~d~-----------~~~~~s~f~~e~~~~~~il~~-~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~ 767 (888)
....++.+. +.....++|+++++...++++ +.+|+++|||||++|+|+..+..+...++..+.+
T Consensus 519 ~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~- 597 (1490)
T TIGR01271 519 TSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMS- 597 (1490)
T ss_pred HHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-
Confidence 111122111 223346788887777666554 7899999999999999999999996555555543
Q ss_pred CCCeEEEEecChhHHHHhhhccccccccccccEeEEEEEE
Q 002722 768 IRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSA 807 (888)
Q Consensus 768 ~~~~~l~~TH~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (888)
++++|++||+++....+|+ +-.+.++++..
T Consensus 598 -~~tvilvtH~~~~~~~ad~---------ii~l~~g~i~~ 627 (1490)
T TIGR01271 598 -NKTRILVTSKLEHLKKADK---------ILLLHEGVCYF 627 (1490)
T ss_pred -CCeEEEEeCChHHHHhCCE---------EEEEECCEEEE
Confidence 8999999999988877877 55566666543
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.5e-12 Score=154.42 Aligned_cols=134 Identities=18% Similarity=0.074 Sum_probs=91.2
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh-------------------hcCcccccccccc--cHH--
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA-------------------QVGSFVPCDRASI--SVR-- 699 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a-------------------~~g~~vp~~~~~~--~~~-- 699 (888)
+.+.++++|++++|+.++|+||+|||||||++.++++.-.. +.-.+||++..-+ ++.
T Consensus 348 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eN 427 (529)
T TIGR02868 348 PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDN 427 (529)
T ss_pred CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHH
Confidence 35899999999999999999999999999999987643111 1224677664211 111
Q ss_pred -------------HHHHHhcCCchhhh-----------hccchhHHHHHHH-HHHHHhCCCCcEEEEeCCCCCCChhhHH
Q 002722 700 -------------DCIFARVGAGDCQL-----------RGVSTFMQEMLET-ASILKGATDRSLIIIDELGRGTSTYDGF 754 (888)
Q Consensus 700 -------------d~i~~~~~~~d~~~-----------~~~s~f~~e~~~~-~~il~~~~~~slvllDEp~~gtd~~~~~ 754 (888)
...+...++.+.+. .+-..+|++.+|. +.+.....+|+++||||||+++|+....
T Consensus 428 I~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~ 507 (529)
T TIGR02868 428 LRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTES 507 (529)
T ss_pred HhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 12233334443322 2224466655554 5555558899999999999999998888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecCh
Q 002722 755 GLAWAICEHLVEEIRAPTLFATHFH 779 (888)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~ 779 (888)
.|...+ ..+. .++|+|++||.+
T Consensus 508 ~I~~~l-~~~~--~~~TvIiItHrl 529 (529)
T TIGR02868 508 ELLEDL-LAAL--SGKTVVVITHHL 529 (529)
T ss_pred HHHHHH-HHhc--CCCEEEEEecCC
Confidence 884444 4443 479999999973
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.8e-12 Score=163.65 Aligned_cols=152 Identities=11% Similarity=0.050 Sum_probs=105.5
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh--------hcCccccccccc--ccHHHH-----------
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA--------QVGSFVPCDRAS--ISVRDC----------- 701 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a--------~~g~~vp~~~~~--~~~~d~----------- 701 (888)
..+.++++|++.+|++++|+||||||||||++++++..... ++ .|+|++..- -++.+.
T Consensus 651 ~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i-~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~ 729 (1522)
T TIGR00957 651 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSV-AYVPQQAWIQNDSLRENILFGKALNEKY 729 (1522)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEE-EEEcCCccccCCcHHHHhhcCCccCHHH
Confidence 46889999999999999999999999999999998754221 12 356655321 112221
Q ss_pred ---HHHhcCCch-----------hhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHH--H
Q 002722 702 ---IFARVGAGD-----------CQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEH--L 764 (888)
Q Consensus 702 ---i~~~~~~~d-----------~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~il~~--l 764 (888)
+....+..+ .+..+...+|+++++...+.+ ...+++++|||||++++|+.....+...+.+. +
T Consensus 730 ~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~ 809 (1522)
T TIGR00957 730 YQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGV 809 (1522)
T ss_pred HHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhh
Confidence 111111111 223344677877777655555 47899999999999999999988886666532 2
Q ss_pred HhcCCCeEEEEecChhHHHHhhhccccccccccccEeEEEEE
Q 002722 765 VEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 765 ~~~~~~~~l~~TH~~~l~~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
. .++++|++||+.+....+|+ +-.+.++++.
T Consensus 810 ~--~~~tvIlvTH~~~~l~~~D~---------ii~l~~G~i~ 840 (1522)
T TIGR00957 810 L--KNKTRILVTHGISYLPQVDV---------IIVMSGGKIS 840 (1522)
T ss_pred h--cCCEEEEEeCChhhhhhCCE---------EEEecCCeEE
Confidence 2 37899999999988877777 5556666654
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.7e-13 Score=127.31 Aligned_cols=137 Identities=15% Similarity=0.112 Sum_probs=100.3
Q ss_pred CccccCCCCeEEEEEecCCCChhHHHhhhhHHH--------------------------hhhhcC-------------cc
Q 002722 648 DCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI--------------------------LMAQVG-------------SF 688 (888)
Q Consensus 648 ~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~--------------------------~~a~~g-------------~~ 688 (888)
.++.....|+++=++|||||||||||-.++++. +++|-- .+
T Consensus 17 plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~ 96 (248)
T COG4138 17 PLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLH 96 (248)
T ss_pred ccccccccceEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhc
Confidence 445566789999999999999999999887653 222211 22
Q ss_pred cccccccccHHHHHHHhcCCchhhhhccchhHHHHHHHHHHHHh-------C-CCCcEEEEeCCCCCCChhhHHHHHHHH
Q 002722 689 VPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-------A-TDRSLIIIDELGRGTSTYDGFGLAWAI 760 (888)
Q Consensus 689 vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-------~-~~~slvllDEp~~gtd~~~~~~i~~~i 760 (888)
+|+ ...-+.++.|...++..|.+.+..+.++++..+...+... + ....|+|+|||.+++|.....++ .++
T Consensus 97 qP~-~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aL-drl 174 (248)
T COG4138 97 QPD-KTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSAL-DRL 174 (248)
T ss_pred Cch-HHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHH-HHH
Confidence 344 2233445667777888999988888888766555443332 1 24479999999999999887777 999
Q ss_pred HHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 761 CEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 761 l~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
+++++. .|.++|+++||..-+ +-+++
T Consensus 175 l~~~c~-~G~~vims~HDLNhTLrhA~~ 201 (248)
T COG4138 175 LSALCQ-QGLAIVMSSHDLNHTLRHAHR 201 (248)
T ss_pred HHHHHh-CCcEEEEeccchhhHHHHHHH
Confidence 999998 799999999996543 45555
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.35 E-value=4e-12 Score=135.48 Aligned_cols=69 Identities=9% Similarity=-0.009 Sum_probs=53.4
Q ss_pred chhHHHHHHHHHHHHh-C----CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 717 STFMQEMLETASILKG-A----TDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 717 s~f~~e~~~~~~il~~-~----~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
..+++++++...+.+. + .+|+++|+|||++|+|+.....+ ..++..+.+ .|.++|++||+.++...+|+
T Consensus 154 ~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l-~~~i~~~~~-~g~~vi~isH~~~~~~~~d~ 227 (247)
T cd03275 154 DNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKV-ASYIREQAG-PNFQFIVISLKEEFFSKADA 227 (247)
T ss_pred HHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHH-HHHHHHhcc-CCcEEEEEECCHHHHhhCCe
Confidence 5566677666555554 2 35899999999999999988888 456666665 48999999999988877776
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.8e-12 Score=131.67 Aligned_cols=137 Identities=14% Similarity=0.083 Sum_probs=82.3
Q ss_pred ccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh----hcCc----ccccc--cc--------------cccHH--HHH
Q 002722 649 CKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA----QVGS----FVPCD--RA--------------SISVR--DCI 702 (888)
Q Consensus 649 ~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a----~~g~----~vp~~--~~--------------~~~~~--d~i 702 (888)
+.++..+| +.+|+||||+||||+|..+....... ..|. ++... .+ ..... +.+
T Consensus 15 ~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 93 (198)
T cd03276 15 LQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCVLSQDMA 93 (198)
T ss_pred eEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCHHHHHHH
Confidence 34444444 88999999999999999986432100 0010 00000 00 01001 122
Q ss_pred HHhcCCchhhhhccchhHHHHHHHHHHHHh-----CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhc--CCCeEEEE
Q 002722 703 FARVGAGDCQLRGVSTFMQEMLETASILKG-----ATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEE--IRAPTLFA 775 (888)
Q Consensus 703 ~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-----~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~--~~~~~l~~ 775 (888)
...+...+.......++++++++...+... +.+|+++|+|||++|+|+.....+.. ++..+... .++++|++
T Consensus 94 ~~~l~~~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~-~l~~~~~~~~~~~~iii~ 172 (198)
T cd03276 94 RSFLTSNKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTD-LLVKEAKKQPGRQFIFIT 172 (198)
T ss_pred HHHhccccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHH-HHHHHHhcCCCcEEEEEE
Confidence 122222444455667888888776665543 47999999999999999998888844 44444432 24689999
Q ss_pred ecChhHHHHhhh
Q 002722 776 THFHELTALAHE 787 (888)
Q Consensus 776 TH~~~l~~~~~~ 787 (888)
||+++.....|+
T Consensus 173 th~~~~i~~~d~ 184 (198)
T cd03276 173 PQDISGLASSDD 184 (198)
T ss_pred CCcccccccccc
Confidence 999876543343
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.8e-12 Score=151.41 Aligned_cols=152 Identities=18% Similarity=0.154 Sum_probs=106.8
Q ss_pred cccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHH---------------------hhhhcCcccccccccc--cH
Q 002722 642 VNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI---------------------LMAQVGSFVPCDRASI--SV 698 (888)
Q Consensus 642 ~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~---------------------~~a~~g~~vp~~~~~~--~~ 698 (888)
+..+.++++|++++|+.++|+||+||||||+++.+.... +..++| +||++..-+ ++
T Consensus 341 ~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~-~V~Qd~~LF~~TI 419 (567)
T COG1132 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIG-IVSQDPLLFSGTI 419 (567)
T ss_pred CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhcc-EEcccceeecccH
Confidence 357889999999999999999999999999999986432 234455 777654211 11
Q ss_pred HH------------------------HHHHhc--CCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChh
Q 002722 699 RD------------------------CIFARV--GAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTY 751 (888)
Q Consensus 699 ~d------------------------~i~~~~--~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~ 751 (888)
.+ ..+.++ |....+..+-+.+|++.+|...+.+ ...+|+++||||||+++|+.
T Consensus 420 ~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~ 499 (567)
T COG1132 420 RENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTE 499 (567)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHH
Confidence 11 112222 2233333344567777666655555 47899999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhhccccccccccccEeEEEEE
Q 002722 752 DGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 752 ~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
.-..+..++. .+.+ +.|+|+++|.+....-+|+ .-.+.++++.
T Consensus 500 tE~~I~~~l~-~l~~--~rT~iiIaHRlsti~~aD~---------IiVl~~G~i~ 542 (567)
T COG1132 500 TEALIQDALK-KLLK--GRTTLIIAHRLSTIKNADR---------IIVLDNGRIV 542 (567)
T ss_pred hHHHHHHHHH-HHhc--CCEEEEEeccHhHHHhCCE---------EEEEECCEEE
Confidence 8888855554 4443 5799999999987777887 6667777743
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=5e-12 Score=165.20 Aligned_cols=153 Identities=12% Similarity=0.034 Sum_probs=107.2
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhh--------cCccccccccc--ccHHH------------
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ--------VGSFVPCDRAS--ISVRD------------ 700 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~--------~g~~vp~~~~~--~~~~d------------ 700 (888)
.++.++++|++++|+.++|+||+|||||||++.+.+..-... .-.|||++..- -++.+
T Consensus 630 ~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~ 709 (1495)
T PLN03232 630 KPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESER 709 (1495)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHH
Confidence 468899999999999999999999999999999976543221 11366665421 11222
Q ss_pred --HHHHhcCCchhh-----------hhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHh
Q 002722 701 --CIFARVGAGDCQ-----------LRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVE 766 (888)
Q Consensus 701 --~i~~~~~~~d~~-----------~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~ 766 (888)
+.+...+..+++ ..+-..+|+++++...+.+ ...+++++|||||++++|+..+..+...++....
T Consensus 710 ~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l- 788 (1495)
T PLN03232 710 YWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL- 788 (1495)
T ss_pred HHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh-
Confidence 222223332222 2233467777666655554 4789999999999999999988888666665543
Q ss_pred cCCCeEEEEecChhHHHHhhhccccccccccccEeEEEEE
Q 002722 767 EIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 767 ~~~~~~l~~TH~~~l~~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
.++|+|++||.......+|+ +..+.++++.
T Consensus 789 -~~kT~IlvTH~~~~l~~aD~---------Ii~L~~G~i~ 818 (1495)
T PLN03232 789 -KGKTRVLVTNQLHFLPLMDR---------IILVSEGMIK 818 (1495)
T ss_pred -cCCEEEEEECChhhHHhCCE---------EEEEeCCEEE
Confidence 37899999999988888887 5566666654
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.8e-12 Score=163.58 Aligned_cols=153 Identities=10% Similarity=0.007 Sum_probs=107.5
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhh--------cCccccccccc--ccHH-------------
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ--------VGSFVPCDRAS--ISVR------------- 699 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~--------~g~~vp~~~~~--~~~~------------- 699 (888)
.++.++++|++++|+.++|+||+|||||||++.+.+..-... .-.|||++..- -++.
T Consensus 630 ~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~ 709 (1622)
T PLN03130 630 RPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPER 709 (1622)
T ss_pred CceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHH
Confidence 468899999999999999999999999999999987543322 11466665421 1111
Q ss_pred -HHHHHhcCCchh-----------hhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHh
Q 002722 700 -DCIFARVGAGDC-----------QLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVE 766 (888)
Q Consensus 700 -d~i~~~~~~~d~-----------~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~ 766 (888)
++.+...++.++ +..+-..+|+++++...+++ ...+++++|||||++++|+..+..+...++..+.
T Consensus 710 y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l- 788 (1622)
T PLN03130 710 YERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL- 788 (1622)
T ss_pred HHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-
Confidence 122222333322 22333467777666655544 5789999999999999999988888666665443
Q ss_pred cCCCeEEEEecChhHHHHhhhccccccccccccEeEEEEE
Q 002722 767 EIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 767 ~~~~~~l~~TH~~~l~~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
.++|+|++||.......+|+ +-.+.++++.
T Consensus 789 -~~kTvIlVTH~l~~l~~aD~---------Ii~L~~G~i~ 818 (1622)
T PLN03130 789 -RGKTRVLVTNQLHFLSQVDR---------IILVHEGMIK 818 (1622)
T ss_pred -cCCEEEEEECCHhHHHhCCE---------EEEEeCCEEE
Confidence 37999999999988888887 5556666654
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.3e-12 Score=125.46 Aligned_cols=123 Identities=15% Similarity=0.185 Sum_probs=74.1
Q ss_pred eEEEEEecCCCChhHHHhhhhHHHhhhhc-----------Cc--ccccccccccHH-HH-HHHhc-CCchhhhhccchhH
Q 002722 657 WFQIITGPNMGGKSTFIRQVGVNILMAQV-----------GS--FVPCDRASISVR-DC-IFARV-GAGDCQLRGVSTFM 720 (888)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~~~~~a~~-----------g~--~vp~~~~~~~~~-d~-i~~~~-~~~d~~~~~~s~f~ 720 (888)
.+.+|+||||+|||++|..++........ .. -.++..+.+.+. +. ++.-. |....+ ++
T Consensus 23 ~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~------LS 96 (178)
T cd03239 23 SFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKSYFLVLQGKVEQI------LS 96 (178)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEECceEEecCCcCccc------CC
Confidence 38999999999999999998764311000 00 001111111110 00 00000 011111 44
Q ss_pred HHHHHHHHHHHh-----CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 721 QEMLETASILKG-----ATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 721 ~e~~~~~~il~~-----~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
+++++...+.+. ..+|+++|+|||++|+|+.....+. ..+..+.+ .|+++|++||+++....+++
T Consensus 97 ~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~-~~L~~~~~-~g~tiIiiSH~~~~~~~adr 166 (178)
T cd03239 97 GGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVS-DMIKEMAK-HTSQFIVITLKKEMFENADK 166 (178)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHh-CCCEEEEEECCHHHHhhCCe
Confidence 455544444332 3689999999999999999888884 45566655 47899999999988776665
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.4e-12 Score=161.29 Aligned_cols=144 Identities=11% Similarity=0.024 Sum_probs=98.9
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh---------------------------------------
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA--------------------------------------- 683 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a--------------------------------------- 683 (888)
..|.++++|++.+|+.++|+||+||||||+++.+.++.-+.
T Consensus 1181 ~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1260 (1466)
T PTZ00265 1181 VPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSL 1260 (1466)
T ss_pred CccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccc
Confidence 46899999999999999999999999999999998754330
Q ss_pred --------------hcC---------------------ccccccccc--ccHHHH---------------HHHhcCCchh
Q 002722 684 --------------QVG---------------------SFVPCDRAS--ISVRDC---------------IFARVGAGDC 711 (888)
Q Consensus 684 --------------~~g---------------------~~vp~~~~~--~~~~d~---------------i~~~~~~~d~ 711 (888)
.-| .+||++..- -++.+. .....++.+-
T Consensus 1261 ~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~f 1340 (1466)
T PTZ00265 1261 TKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEF 1340 (1466)
T ss_pred ccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHH
Confidence 111 245555321 111111 1222222222
Q ss_pred -----------hhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecCh
Q 002722 712 -----------QLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFH 779 (888)
Q Consensus 712 -----------~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~ 779 (888)
+..+-..+|++++|...|.+ .+.+|+++||||||+++|+.....| ...+..+....++|+|++||.+
T Consensus 1341 I~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I-~~~L~~~~~~~~~TvIiIaHRl 1419 (1466)
T PTZ00265 1341 IESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLI-EKTIVDIKDKADKTIITIAHRI 1419 (1466)
T ss_pred HHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHH-HHHHHHHhccCCCEEEEEechH
Confidence 22233567777766655554 4789999999999999999887777 4444555321489999999999
Q ss_pred hHHHHhhh
Q 002722 780 ELTALAHE 787 (888)
Q Consensus 780 ~l~~~~~~ 787 (888)
...+.+|+
T Consensus 1420 sti~~aD~ 1427 (1466)
T PTZ00265 1420 ASIKRSDK 1427 (1466)
T ss_pred HHHHhCCE
Confidence 88888887
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.4e-12 Score=151.89 Aligned_cols=153 Identities=15% Similarity=0.129 Sum_probs=103.9
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHH---------------------hhhhcCcccccccc--cccHH
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI---------------------LMAQVGSFVPCDRA--SISVR 699 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~---------------------~~a~~g~~vp~~~~--~~~~~ 699 (888)
..|.++++|.+++|+.++|+||+||||||+++.+.... +..++| .|.++.. ..++.
T Consensus 366 v~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~ig-lV~QePvlF~~tI~ 444 (1228)
T KOG0055|consen 366 VKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIG-LVSQEPVLFATTIR 444 (1228)
T ss_pred chhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcC-eeeechhhhcccHH
Confidence 47999999999999999999999999999999986432 223444 2222221 11111
Q ss_pred HHHH---------------HhcCCch-----------hhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhh
Q 002722 700 DCIF---------------ARVGAGD-----------CQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYD 752 (888)
Q Consensus 700 d~i~---------------~~~~~~d-----------~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~ 752 (888)
+.|. ..-++.+ ....+--.+|++++|...|.+ .+.+|+++||||||++||+..
T Consensus 445 eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~s 524 (1228)
T KOG0055|consen 445 ENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAES 524 (1228)
T ss_pred HHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHH
Confidence 1110 0011111 111122246778777666555 478999999999999999977
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhhccccccccccccEeEEEEEEE
Q 002722 753 GFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAH 808 (888)
Q Consensus 753 ~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~ 808 (888)
-..+ ...+.+... |.|+|+++|.+...+-+|. ...+.++++...
T Consensus 525 e~~V-q~ALd~~~~--grTTivVaHRLStIrnaD~---------I~v~~~G~IvE~ 568 (1228)
T KOG0055|consen 525 ERVV-QEALDKASK--GRTTIVVAHRLSTIRNADK---------IAVMEEGKIVEQ 568 (1228)
T ss_pred HHHH-HHHHHHhhc--CCeEEEEeeehhhhhccCE---------EEEEECCEEEEe
Confidence 6666 666676654 8899999999988877887 667777776543
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.9e-12 Score=137.16 Aligned_cols=153 Identities=20% Similarity=0.133 Sum_probs=102.1
Q ss_pred CcccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHH---------------------HhhhhcCcccccccccc--c
Q 002722 641 WVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVN---------------------ILMAQVGSFVPCDRASI--S 697 (888)
Q Consensus 641 ~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~---------------------~~~a~~g~~vp~~~~~~--~ 697 (888)
++..|..|++|++.+|+.++|+||+||||||+||.+-.. .+..++| .||++..-+ +
T Consensus 549 p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IG-VVPQDtvLFNdT 627 (790)
T KOG0056|consen 549 PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIG-VVPQDTVLFNDT 627 (790)
T ss_pred CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcC-cccCcceeecce
Confidence 456889999999999999999999999999999986421 1234455 567664211 1
Q ss_pred HHH---------------------HHHHhcC-C----chhh-hhccchhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCCh
Q 002722 698 VRD---------------------CIFARVG-A----GDCQ-LRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTST 750 (888)
Q Consensus 698 ~~d---------------------~i~~~~~-~----~d~~-~~~~s~f~~e~~~~~~il~~~~~~slvllDEp~~gtd~ 750 (888)
+++ .|..|+- . .... .+|+..-.+|.++++.+......|++++|||.|+.+|+
T Consensus 628 I~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT 707 (790)
T KOG0056|consen 628 ILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDT 707 (790)
T ss_pred eeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCC
Confidence 111 1111110 0 0001 12232223566666666666889999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhhccccccccccccEeEEEEE
Q 002722 751 YDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 751 ~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
..-.+| .+.+..++. +.|.|++.|-+.-.--+|. +-.++++++.
T Consensus 708 ~tER~I-QaaL~rlca--~RTtIVvAHRLSTivnAD~---------ILvi~~G~Iv 751 (790)
T KOG0056|consen 708 NTERAI-QAALARLCA--NRTTIVVAHRLSTIVNADL---------ILVISNGRIV 751 (790)
T ss_pred ccHHHH-HHHHHHHhc--CCceEEEeeeehheecccE---------EEEEeCCeEe
Confidence 999999 777788875 7888889898765444554 4455665553
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.6e-11 Score=127.12 Aligned_cols=179 Identities=16% Similarity=0.125 Sum_probs=121.9
Q ss_pred CCCCccCCCCCccEEEEcCcCceeeeccCcccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhcCc-----
Q 002722 613 YTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGS----- 687 (888)
Q Consensus 613 ~~rP~~~~~~~~~l~i~~~rhp~~~~~~~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~g~----- 687 (888)
+-+|+--++ -..+++++-|....+ ..|-.+.+++++..|+++.|+|.||||||||++.+.++.-+...+.
T Consensus 311 ~~~~q~~p~-~~~lelrnvrfay~~----~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~ 385 (546)
T COG4615 311 FPRPQAFPD-WKTLELRNVRFAYQD----NAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGK 385 (546)
T ss_pred CCCCCcCCc-ccceeeeeeeeccCc----ccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCc
Confidence 444443332 134888887766544 2377888899999999999999999999999999877654433222
Q ss_pred cccccccc--ccHHHHHH-------------------------HhcCCchhhhhccchh-----H-HHHHHHHHHHHhCC
Q 002722 688 FVPCDRAS--ISVRDCIF-------------------------ARVGAGDCQLRGVSTF-----M-QEMLETASILKGAT 734 (888)
Q Consensus 688 ~vp~~~~~--~~~~d~i~-------------------------~~~~~~d~~~~~~s~f-----~-~e~~~~~~il~~~~ 734 (888)
+|.++... -+.+..+| .|+.......-.-..| | ++.++++.++..+-
T Consensus 386 pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllE 465 (546)
T COG4615 386 PVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLE 465 (546)
T ss_pred cCCCCCHHHHHHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHh
Confidence 22222210 12222233 3322211111111112 1 66788888888899
Q ss_pred CCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhhccccccccccccEeEEEEE
Q 002722 735 DRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 735 ~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
+++++++||-.+.-||.-+...-..++-.+++ .|+|++.+|||..-...+|+ .-.++|+++.
T Consensus 466 eR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~-qGKTI~aIsHDd~YF~~ADr---------ll~~~~G~~~ 527 (546)
T COG4615 466 ERDILVLDEWAADQDPAFRREFYQVLLPLLKE-QGKTIFAISHDDHYFIHADR---------LLEMRNGQLS 527 (546)
T ss_pred hCCeEEeehhhccCChHHHHHHHHHHhHHHHH-hCCeEEEEecCchhhhhHHH---------HHHHhcCcee
Confidence 99999999999999999998886666666766 89999999999877778888 7777787764
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.8e-11 Score=155.38 Aligned_cols=152 Identities=13% Similarity=0.059 Sum_probs=106.2
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHh--------------------hhhcCcccccccccc--cH--
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL--------------------MAQVGSFVPCDRASI--SV-- 698 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~--------------------~a~~g~~vp~~~~~~--~~-- 698 (888)
..|.++++|++++|+.++|+||+||||||+++.+.++.- +.+.-++||++..-+ ++
T Consensus 1249 ~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~ 1328 (1495)
T PLN03232 1249 PPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRF 1328 (1495)
T ss_pred CcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHH
Confidence 468999999999999999999999999999999875421 111224667664211 11
Q ss_pred ------------HHHHHHhcCCch-----------hhhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHH
Q 002722 699 ------------RDCIFARVGAGD-----------CQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDGF 754 (888)
Q Consensus 699 ------------~d~i~~~~~~~d-----------~~~~~~s~f~~e~~~~~~il~~-~~~~slvllDEp~~gtd~~~~~ 754 (888)
+.+.+.+.++.+ .+..+-+.+|++++|+..+.++ +.+|+++||||||+++|+..-.
T Consensus 1329 NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~ 1408 (1495)
T PLN03232 1329 NIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDS 1408 (1495)
T ss_pred HcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHH
Confidence 112233334333 2333445688777776555554 7899999999999999998766
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecChhHHHHhhhccccccccccccEeEEEEE
Q 002722 755 GLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
.| ...++... .++|+|++||.++....+|+ +-.+.++++.
T Consensus 1409 ~I-q~~L~~~~--~~~TvI~IAHRl~ti~~~Dr---------IlVL~~G~iv 1448 (1495)
T PLN03232 1409 LI-QRTIREEF--KSCTMLVIAHRLNTIIDCDK---------ILVLSSGQVL 1448 (1495)
T ss_pred HH-HHHHHHHc--CCCEEEEEeCCHHHHHhCCE---------EEEEECCEEE
Confidence 66 44444443 37999999999988877887 6666666654
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.6e-11 Score=160.29 Aligned_cols=152 Identities=10% Similarity=0.032 Sum_probs=105.7
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHh-------------------hhhcCccccccccc--------
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL-------------------MAQVGSFVPCDRAS-------- 695 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~-------------------~a~~g~~vp~~~~~-------- 695 (888)
..+.++++|++.+|+.++|+|++|||||||++++.++.- +.+.-+++|++..-
T Consensus 1232 ~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~N 1311 (1490)
T TIGR01271 1232 RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKN 1311 (1490)
T ss_pred cceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHH
Confidence 578999999999999999999999999999999987642 11112356665421
Q ss_pred ccH--------HHHHHHhcCCchhh-----------hhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHH
Q 002722 696 ISV--------RDCIFARVGAGDCQ-----------LRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFG 755 (888)
Q Consensus 696 ~~~--------~d~i~~~~~~~d~~-----------~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~ 755 (888)
+.+ +...+.+.++.+.+ ..+-+.||++.+|+..+++ .+.+++++||||||+++|+..-..
T Consensus 1312 Ldp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~ 1391 (1490)
T TIGR01271 1312 LDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQI 1391 (1490)
T ss_pred hCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHH
Confidence 111 11234444444332 2233467777766655554 478999999999999999987666
Q ss_pred HHHHHHHHHHhcCCCeEEEEecChhHHHHhhhccccccccccccEeEEEEE
Q 002722 756 LAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 756 i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
| ...+.... .++|+|++||.++....+|+ +-.+.++++.
T Consensus 1392 I-~~~L~~~~--~~~TvI~IaHRl~ti~~~Dr---------IlvL~~G~iv 1430 (1490)
T TIGR01271 1392 I-RKTLKQSF--SNCTVILSEHRVEALLECQQ---------FLVIEGSSVK 1430 (1490)
T ss_pred H-HHHHHHHc--CCCEEEEEecCHHHHHhCCE---------EEEEECCEEE
Confidence 6 44444443 37999999999988877877 5556666553
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.1e-11 Score=130.83 Aligned_cols=153 Identities=17% Similarity=0.121 Sum_probs=108.0
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh-------------------------------hhcCcccccc
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-------------------------------AQVGSFVPCD 692 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~-------------------------------a~~g~~vp~~ 692 (888)
..-++++|+...|+.++|+|.+|||||||=+.+..+.-. .-.|++-|..
T Consensus 301 ~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRm 380 (534)
T COG4172 301 RAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRM 380 (534)
T ss_pred EEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCccc
Confidence 355789999999999999999999999998876543210 0122322211
Q ss_pred cc-------------cccH------HHHHHHhcCCc-hhhhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChh
Q 002722 693 RA-------------SISV------RDCIFARVGAG-DCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTY 751 (888)
Q Consensus 693 ~~-------------~~~~------~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~~-~~~~slvllDEp~~gtd~~ 751 (888)
.. .++- +-..+..+|.. +...+....||++.+|...|.++ +.+|++|+|||||+.+|-.
T Consensus 381 tV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~S 460 (534)
T COG4172 381 TVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRS 460 (534)
T ss_pred CHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHH
Confidence 10 0000 11234455653 34456677899888777666554 7899999999999999998
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEecChhHHH-HhhhccccccccccccEeEEEEE
Q 002722 752 DGFGLAWAICEHLVEEIRAPTLFATHFHELTA-LAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 752 ~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~-~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
-...+ ..+++.|.++.|..-||+|||+.+.. +|++ +..++++++.
T Consensus 461 VQaQv-v~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~---------viVm~~GkiV 506 (534)
T COG4172 461 VQAQV-LDLLRDLQQKHGLSYLFISHDLAVVRALCHR---------VIVMRDGKIV 506 (534)
T ss_pred HHHHH-HHHHHHHHHHhCCeEEEEeccHHHHHHhhce---------EEEEeCCEEe
Confidence 77777 77888888878999999999988774 7777 5666776654
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.7e-11 Score=158.65 Aligned_cols=153 Identities=12% Similarity=0.027 Sum_probs=108.0
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHh--------------------hhhcCcccccccccc--cH--
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL--------------------MAQVGSFVPCDRASI--SV-- 698 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~--------------------~a~~g~~vp~~~~~~--~~-- 698 (888)
..|.++++|++.+|+.++|+||+||||||+++.+..+.- +.+.-++||++..-+ ++
T Consensus 1252 ~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIre 1331 (1622)
T PLN03130 1252 PPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRF 1331 (1622)
T ss_pred CceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHH
Confidence 468999999999999999999999999999999875431 111223566654211 11
Q ss_pred ------------HHHHHHhcCCch-----------hhhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHH
Q 002722 699 ------------RDCIFARVGAGD-----------CQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDGF 754 (888)
Q Consensus 699 ------------~d~i~~~~~~~d-----------~~~~~~s~f~~e~~~~~~il~~-~~~~slvllDEp~~gtd~~~~~ 754 (888)
+...+.+.++.+ .+..+-+.||++++|+..+.++ +.+|+++||||||+++|+..-.
T Consensus 1332 NLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~ 1411 (1622)
T PLN03130 1332 NLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDA 1411 (1622)
T ss_pred HhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHH
Confidence 112233333332 3334445788777777655554 7899999999999999998776
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecChhHHHHhhhccccccccccccEeEEEEEE
Q 002722 755 GLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSA 807 (888)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (888)
.| ...++... .++|+|+++|.++...-+|+ +..+.++++..
T Consensus 1412 ~I-q~~I~~~~--~~~TvI~IAHRL~tI~~~Dr---------IlVLd~G~IvE 1452 (1622)
T PLN03130 1412 LI-QKTIREEF--KSCTMLIIAHRLNTIIDCDR---------ILVLDAGRVVE 1452 (1622)
T ss_pred HH-HHHHHHHC--CCCEEEEEeCChHHHHhCCE---------EEEEECCEEEE
Confidence 66 44555443 38999999999988888888 67778887753
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1e-10 Score=130.13 Aligned_cols=139 Identities=18% Similarity=0.190 Sum_probs=85.4
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh--hhcCccc------------------cccc--c-------
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--AQVGSFV------------------PCDR--A------- 694 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~--a~~g~~v------------------p~~~--~------- 694 (888)
.+..|+.|+...|+-++|+|||||||||+|++|++--.+ .+++.|. ++.. .
T Consensus 89 ~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~~~~~e~~rle~~~E 168 (614)
T KOG0927|consen 89 ELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVMETDHERKRLEYLAE 168 (614)
T ss_pred eeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhhhhHHHHHHHHHHHH
Confidence 445688999999999999999999999999999754321 2222221 1000 0
Q ss_pred ---------cccHHHHHHHh-------------------cC-CchhhhhccchhHHHHHHHHH-HHHhCCCCcEEEEeCC
Q 002722 695 ---------SISVRDCIFAR-------------------VG-AGDCQLRGVSTFMQEMLETAS-ILKGATDRSLIIIDEL 744 (888)
Q Consensus 695 ---------~~~~~d~i~~~-------------------~~-~~d~~~~~~s~f~~e~~~~~~-il~~~~~~slvllDEp 744 (888)
....++.++.| +| ....+.+..-.||++.+..+. +.....+|+|+|||||
T Consensus 169 ~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEP 248 (614)
T KOG0927|consen 169 DLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEP 248 (614)
T ss_pred HHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEecCC
Confidence 00001112222 22 122233334456665544444 3344789999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCC-eEEEEecChhHH-HHhhh
Q 002722 745 GRGTSTYDGFGLAWAICEHLVEEIRA-PTLFATHFHELT-ALAHE 787 (888)
Q Consensus 745 ~~gtd~~~~~~i~~~il~~l~~~~~~-~~l~~TH~~~l~-~~~~~ 787 (888)
|+|||+.....+ -++|.+ ... ++++++|+.+.. .+|..
T Consensus 249 tnhLDleA~~wL----ee~L~k-~d~~~lVi~sh~QDfln~vCT~ 288 (614)
T KOG0927|consen 249 TNHLDLEAIVWL----EEYLAK-YDRIILVIVSHSQDFLNGVCTN 288 (614)
T ss_pred ccCCCHHHHHHH----HHHHHh-ccCceEEEEecchhhhhhHhhh
Confidence 999999644433 455665 444 789999998765 46655
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.4e-11 Score=157.37 Aligned_cols=152 Identities=14% Similarity=0.083 Sum_probs=107.1
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHh--------------------hhhcCcccccccccc--cH--
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL--------------------MAQVGSFVPCDRASI--SV-- 698 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~--------------------~a~~g~~vp~~~~~~--~~-- 698 (888)
..|.++++|++.+|+.++|+|++|||||||++.+.++.- +.+.-++||++..-+ ++
T Consensus 1323 ~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIre 1402 (1560)
T PTZ00243 1323 PLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQ 1402 (1560)
T ss_pred CceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHH
Confidence 468999999999999999999999999999999875431 112234677664211 11
Q ss_pred ------------HHHHHHhcCCchh-----------hhhccchhHHHHHHHHHHHHh-CCC-CcEEEEeCCCCCCChhhH
Q 002722 699 ------------RDCIFARVGAGDC-----------QLRGVSTFMQEMLETASILKG-ATD-RSLIIIDELGRGTSTYDG 753 (888)
Q Consensus 699 ------------~d~i~~~~~~~d~-----------~~~~~s~f~~e~~~~~~il~~-~~~-~slvllDEp~~gtd~~~~ 753 (888)
+...+...|+.+. +..+-+.+|++.+|+..+.++ +.+ ++++||||||+++|+..-
T Consensus 1403 NIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te 1482 (1560)
T PTZ00243 1403 NVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALD 1482 (1560)
T ss_pred HhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHH
Confidence 1123334444332 233345788888887666665 554 799999999999999877
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhhccccccccccccEeEEEEE
Q 002722 754 FGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
..| ...+.... .++|+|+++|.++....+|+ +..+.++++.
T Consensus 1483 ~~I-q~~L~~~~--~~~TvI~IAHRl~ti~~~Dr---------IlVLd~G~Vv 1523 (1560)
T PTZ00243 1483 RQI-QATVMSAF--SAYTVITIAHRLHTVAQYDK---------IIVMDHGAVA 1523 (1560)
T ss_pred HHH-HHHHHHHC--CCCEEEEEeccHHHHHhCCE---------EEEEECCEEE
Confidence 777 55555443 37999999999988888887 6666666654
|
|
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.4e-11 Score=126.10 Aligned_cols=72 Identities=8% Similarity=0.007 Sum_probs=51.6
Q ss_pred ccchhHHHHHHHHHHHHh-----CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCC-CeEEEEecCh-hHHHHhhh
Q 002722 715 GVSTFMQEMLETASILKG-----ATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIR-APTLFATHFH-ELTALAHE 787 (888)
Q Consensus 715 ~~s~f~~e~~~~~~il~~-----~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~-~~~l~~TH~~-~l~~~~~~ 787 (888)
...++++++++++.+... +.+|+++|+|||++|+|+.....+ ..++..+.++.| .++|++||++ +..+.+++
T Consensus 123 ~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i-~~~l~~~~~~~g~~~viiith~~~~~~~~~~~ 201 (213)
T cd03277 123 DPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKV-FDMLVETACKEGTSQYFLITPKLLPGLNYHEK 201 (213)
T ss_pred chhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHH-HHHHHHHhhcCCCceEEEEchhhccCCcccCc
Confidence 345778888887554432 579999999999999999998888 556666655224 5799999985 33344443
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.5e-12 Score=119.99 Aligned_cols=100 Identities=19% Similarity=0.250 Sum_probs=67.2
Q ss_pred CCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh--------------------hhcCcccccccc---ccc------
Q 002722 647 NDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRA---SIS------ 697 (888)
Q Consensus 647 n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~--------------------a~~g~~vp~~~~---~~~------ 697 (888)
++++|++.+|++++|+||||||||||++++++.... .+.-.++|.... ...
T Consensus 2 ~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~~ 81 (137)
T PF00005_consen 2 KNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENES 81 (137)
T ss_dssp EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHHH
T ss_pred CceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 578888899999999999999999999999765422 111223444321 111
Q ss_pred --HHHHHHHhcCCchhhhhcc----chhHHHHHHHHHHH-HhCCCCcEEEEeCCCC
Q 002722 698 --VRDCIFARVGAGDCQLRGV----STFMQEMLETASIL-KGATDRSLIIIDELGR 746 (888)
Q Consensus 698 --~~d~i~~~~~~~d~~~~~~----s~f~~e~~~~~~il-~~~~~~slvllDEp~~ 746 (888)
.+..++..++..+...... +.+|+++++...++ ..+.+|+++||||||+
T Consensus 82 ~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 82 DERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 2334566666544333333 78887666655444 4578999999999985
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.4e-11 Score=138.99 Aligned_cols=153 Identities=15% Similarity=0.101 Sum_probs=102.6
Q ss_pred CcccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHH---------------------hhhhcCcccccccc--ccc
Q 002722 641 WVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI---------------------LMAQVGSFVPCDRA--SIS 697 (888)
Q Consensus 641 ~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~---------------------~~a~~g~~vp~~~~--~~~ 697 (888)
++..|.+|++|++.+|++++|+||||+||||+...+-.+- +..++| +|-++.. .-+
T Consensus 479 p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig-~V~QEPvLFs~s 557 (716)
T KOG0058|consen 479 PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIG-LVGQEPVLFSGS 557 (716)
T ss_pred CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHee-eeeccceeeccc
Confidence 3457999999999999999999999999999998874321 112232 2322220 011
Q ss_pred H------------------------HHHHHHhc--CCchhhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCCh
Q 002722 698 V------------------------RDCIFARV--GAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTST 750 (888)
Q Consensus 698 ~------------------------~d~i~~~~--~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~ 750 (888)
+ .+.+.+.+ |-.-.....-+.+|++++|..+|.+ ...+|.++||||.|+.||.
T Consensus 558 I~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDa 637 (716)
T KOG0058|consen 558 IRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDA 637 (716)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcch
Confidence 1 11222222 1222233334577777777665555 4789999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhhccccccccccccEeEEEEE
Q 002722 751 YDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 751 ~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
..-..+ ...+..+.+ +.|||++.|-+...+-++. +..+..+++.
T Consensus 638 eSE~lV-q~aL~~~~~--~rTVlvIAHRLSTV~~Ad~---------Ivvi~~G~V~ 681 (716)
T KOG0058|consen 638 ESEYLV-QEALDRLMQ--GRTVLVIAHRLSTVRHADQ---------IVVIDKGRVV 681 (716)
T ss_pred hhHHHH-HHHHHHhhc--CCeEEEEehhhhHhhhccE---------EEEEcCCeEE
Confidence 766666 555555654 6899999999998888877 5555555553
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.3e-11 Score=157.81 Aligned_cols=152 Identities=9% Similarity=-0.036 Sum_probs=105.0
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHh--------------------hhhcCccccccccc-------
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL--------------------MAQVGSFVPCDRAS------- 695 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~--------------------~a~~g~~vp~~~~~------- 695 (888)
..|.++++|++++|+.++|+||+||||||+++.+..+.- +.+.-++||++..-
T Consensus 1299 ~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~ 1378 (1522)
T TIGR00957 1299 DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRM 1378 (1522)
T ss_pred cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHH
Confidence 468999999999999999999999999999999875431 11122356665421
Q ss_pred -ccH--------HHHHHHhcCCch-----------hhhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHH
Q 002722 696 -ISV--------RDCIFARVGAGD-----------CQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGF 754 (888)
Q Consensus 696 -~~~--------~d~i~~~~~~~d-----------~~~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~ 754 (888)
+.+ +...+...++.+ .+..+-+.||++.+|+..+.+ .+.+++++||||||+++|+..-.
T Consensus 1379 NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~ 1458 (1522)
T TIGR00957 1379 NLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDN 1458 (1522)
T ss_pred HcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHH
Confidence 111 112233333332 233344568877777655555 47899999999999999997766
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecChhHHHHhhhccccccccccccEeEEEEE
Q 002722 755 GLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
.| ...++... .++|+|+++|..+....+|+ +-.+.++++.
T Consensus 1459 ~I-q~~l~~~~--~~~TvI~IAHRl~ti~~~Dr---------IlVld~G~Iv 1498 (1522)
T TIGR00957 1459 LI-QSTIRTQF--EDCTVLTIAHRLNTIMDYTR---------VIVLDKGEVA 1498 (1522)
T ss_pred HH-HHHHHHHc--CCCEEEEEecCHHHHHhCCE---------EEEEECCEEE
Confidence 66 44454443 47999999999988887887 5556666653
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4e-10 Score=130.01 Aligned_cols=142 Identities=17% Similarity=0.084 Sum_probs=96.7
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhh--------c-Ccccccccc-----------------cc
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ--------V-GSFVPCDRA-----------------SI 696 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~--------~-g~~vp~~~~-----------------~~ 696 (888)
....++.+|.+++|+-+.|+||||||||||+|++|++-..+. . -.|+|+..- .+
T Consensus 406 ~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~ 485 (604)
T COG4178 406 QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDF 485 (604)
T ss_pred CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCC
Confidence 466678889999999999999999999999999998643222 1 134443320 01
Q ss_pred c--HHHHHHHhcCCchhhhh------ccchhH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhc
Q 002722 697 S--VRDCIFARVGAGDCQLR------GVSTFM-QEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEE 767 (888)
Q Consensus 697 ~--~~d~i~~~~~~~d~~~~------~~s~f~-~e~~~~~~il~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~ 767 (888)
+ .+-.++..+|+.+-..+ -...++ +|.++++.+.-..++|++++|||-|+++|+..-..+...+.+++
T Consensus 486 ~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l--- 562 (604)
T COG4178 486 SDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL--- 562 (604)
T ss_pred ChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC---
Confidence 1 11234445554432221 112233 67777777777789999999999999999987777743333333
Q ss_pred CCCeEEEEecChhHHHHhhh
Q 002722 768 IRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 768 ~~~~~l~~TH~~~l~~~~~~ 787 (888)
.++++|-+.|-..+..+.++
T Consensus 563 p~~tvISV~Hr~tl~~~h~~ 582 (604)
T COG4178 563 PDATVISVGHRPTLWNFHSR 582 (604)
T ss_pred CCCEEEEeccchhhHHHHhh
Confidence 57999999999988776554
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.5e-10 Score=142.36 Aligned_cols=82 Identities=20% Similarity=0.154 Sum_probs=62.8
Q ss_pred HhcCCch-hhhhccchhHHHHHHHHHHHHh-CCCC---cEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecC
Q 002722 704 ARVGAGD-CQLRGVSTFMQEMLETASILKG-ATDR---SLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHF 778 (888)
Q Consensus 704 ~~~~~~d-~~~~~~s~f~~e~~~~~~il~~-~~~~---slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~ 778 (888)
..+|+.. .+....+++|+++++...+.+. +.++ +++|||||++|+|+.+...+ ..++..+.+ .|.++|++||+
T Consensus 815 ~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L-~~~L~~l~~-~G~TVIiitH~ 892 (943)
T PRK00349 815 VDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKL-LEVLHRLVD-KGNTVVVIEHN 892 (943)
T ss_pred HHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHH-HHHHHHHHh-CCCEEEEEecC
Confidence 3445543 3556678888887776665554 4555 89999999999999999998 566777776 58999999999
Q ss_pred hhHHHHhhh
Q 002722 779 HELTALAHE 787 (888)
Q Consensus 779 ~~l~~~~~~ 787 (888)
+++...++.
T Consensus 893 ~~~i~~aD~ 901 (943)
T PRK00349 893 LDVIKTADW 901 (943)
T ss_pred HHHHHhCCE
Confidence 988776665
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-10 Score=142.82 Aligned_cols=83 Identities=20% Similarity=0.182 Sum_probs=63.8
Q ss_pred HHhcCCch-hhhhccchhHHHHHHHHHHHHhC-C---CCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEec
Q 002722 703 FARVGAGD-CQLRGVSTFMQEMLETASILKGA-T---DRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATH 777 (888)
Q Consensus 703 ~~~~~~~d-~~~~~~s~f~~e~~~~~~il~~~-~---~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH 777 (888)
+..+|+.. .+.+..+++|+++++...+.+.. . +|+++|||||++|+|+.+...+ ..++..+.+ .|.++|++||
T Consensus 812 L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L-~~~L~~l~~-~G~TVIvi~H 889 (924)
T TIGR00630 812 LCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKL-LEVLQRLVD-QGNTVVVIEH 889 (924)
T ss_pred HHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHH-HHHHHHHHh-CCCEEEEEeC
Confidence 34456654 35667788888887776665543 2 5899999999999999999998 566677776 5899999999
Q ss_pred ChhHHHHhhh
Q 002722 778 FHELTALAHE 787 (888)
Q Consensus 778 ~~~l~~~~~~ 787 (888)
++++...++.
T Consensus 890 ~~~~i~~aD~ 899 (924)
T TIGR00630 890 NLDVIKTADY 899 (924)
T ss_pred CHHHHHhCCE
Confidence 9988776665
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-10 Score=148.69 Aligned_cols=83 Identities=16% Similarity=0.140 Sum_probs=66.3
Q ss_pred HHhcCCchh-hhhccchhHHHHHHHHHHHHhC----CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEec
Q 002722 703 FARVGAGDC-QLRGVSTFMQEMLETASILKGA----TDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATH 777 (888)
Q Consensus 703 ~~~~~~~d~-~~~~~s~f~~e~~~~~~il~~~----~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH 777 (888)
+..+|+.+. +.....++|+++++...+.+.. .+|+++|||||++|+|+.+...+ ..++..+.+ .|.++|++||
T Consensus 793 L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~L-l~lL~~L~~-~G~TVIiIsH 870 (1809)
T PRK00635 793 LCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKAL-IYVLQSLTH-QGHTVVIIEH 870 (1809)
T ss_pred HHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHh-cCCEEEEEeC
Confidence 445676654 5667788888887776666654 58999999999999999999998 666777776 5899999999
Q ss_pred ChhHHHHhhh
Q 002722 778 FHELTALAHE 787 (888)
Q Consensus 778 ~~~l~~~~~~ 787 (888)
++++...+|+
T Consensus 871 dl~~i~~aDr 880 (1809)
T PRK00635 871 NMHVVKVADY 880 (1809)
T ss_pred CHHHHHhCCE
Confidence 9988777766
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.1e-10 Score=123.37 Aligned_cols=143 Identities=15% Similarity=0.052 Sum_probs=101.3
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh------------------------------hhcCcccccc
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM------------------------------AQVGSFVPCD 692 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~------------------------------a~~g~~vp~~ 692 (888)
..+.++++|++..|+.++|+|.+|||||...+.+..+.-- +.++ .+.++
T Consensus 23 ~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~-MIFQE 101 (534)
T COG4172 23 VEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIG-MIFQE 101 (534)
T ss_pred eEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceE-EEecc
Confidence 4567899999999999999999999999998887654311 0111 11111
Q ss_pred cc-cccHH--------------------------HHHHHhcCCch---hhhhccchhHHHHHHHHHHH-HhCCCCcEEEE
Q 002722 693 RA-SISVR--------------------------DCIFARVGAGD---CQLRGVSTFMQEMLETASIL-KGATDRSLIII 741 (888)
Q Consensus 693 ~~-~~~~~--------------------------d~i~~~~~~~d---~~~~~~s~f~~e~~~~~~il-~~~~~~slvll 741 (888)
.. .+.++ -.++.++|..+ .+......+|++.+|...|. +.+++|+|+|-
T Consensus 102 PMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIA 181 (534)
T COG4172 102 PMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIA 181 (534)
T ss_pred cccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEee
Confidence 10 01111 12455566543 34445566777766655544 45899999999
Q ss_pred eCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHH-Hhhh
Q 002722 742 DELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTA-LAHE 787 (888)
Q Consensus 742 DEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~-~~~~ 787 (888)
||||..+|..-...| ..+++.|..+.|..++|+|||+.+.. ++|+
T Consensus 182 DEPTTALDVtvQaQI-L~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADr 227 (534)
T COG4172 182 DEPTTALDVTVQAQI-LDLLKELQAELGMAILFITHDLGIVRKFADR 227 (534)
T ss_pred cCCcchhhhhhHHHH-HHHHHHHHHHhCcEEEEEeccHHHHHHhhhh
Confidence 999999999888888 67788888778999999999998874 7777
|
|
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.2e-10 Score=123.33 Aligned_cols=140 Identities=21% Similarity=0.276 Sum_probs=99.9
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhh-----------------cCccccccc-c---cccHHH-
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ-----------------VGSFVPCDR-A---SISVRD- 700 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~-----------------~g~~vp~~~-~---~~~~~d- 700 (888)
.++..|++|.+.+|.+++|+|++|+||||+||++.+...--- +...+|.+. . ...+.+
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tileh 475 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEH 475 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHH
Confidence 478889999999999999999999999999999987542110 001122221 1 112222
Q ss_pred ------------HHHHhcCCchhhh--hccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHH
Q 002722 701 ------------CIFARVGAGDCQL--RGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDGFGLAWAICEHLV 765 (888)
Q Consensus 701 ------------~i~~~~~~~d~~~--~~~s~f~~e~~~~~~il~~-~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~ 765 (888)
.++.+.|++|... ...+.++.+.++.+.+... +..|.+++.||.++-+|+..+..+|..+-+ ++
T Consensus 476 l~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkise-la 554 (593)
T COG2401 476 LRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISE-LA 554 (593)
T ss_pred HhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHH-HH
Confidence 4566677666543 2345555666665555554 567899999999999999999999877755 44
Q ss_pred hcCCCeEEEEecChhHHH
Q 002722 766 EEIRAPTLFATHFHELTA 783 (888)
Q Consensus 766 ~~~~~~~l~~TH~~~l~~ 783 (888)
.+.|.|.+++||..++.+
T Consensus 555 Re~giTlivvThrpEv~~ 572 (593)
T COG2401 555 REAGITLIVVTHRPEVGN 572 (593)
T ss_pred HHhCCeEEEEecCHHHHh
Confidence 447999999999999875
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.6e-10 Score=124.28 Aligned_cols=131 Identities=18% Similarity=0.127 Sum_probs=94.9
Q ss_pred CCCeEEEEEecCCCChhHHHhhhhHHHhhhhc------Cccccccc-----ccc---------------cHHHHHHHhcC
Q 002722 654 GKSWFQIITGPNMGGKSTFIRQVGVNILMAQV------GSFVPCDR-----ASI---------------SVRDCIFARVG 707 (888)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~------g~~vp~~~-----~~~---------------~~~d~i~~~~~ 707 (888)
..|+++++.||||-|||||.|++|+..-.... -+|-|+-- ... .+...++..+.
T Consensus 365 ~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~ 444 (591)
T COG1245 365 YDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLN 444 (591)
T ss_pred ecceEEEEECCCCcchHHHHHHHhccccCCCCCCccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCccc
Confidence 45789999999999999999999986543321 12333211 000 01123455566
Q ss_pred CchhhhhccchhH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHh
Q 002722 708 AGDCQLRGVSTFM-QEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALA 785 (888)
Q Consensus 708 ~~d~~~~~~s~f~-~e~~~~~~il~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~ 785 (888)
+.+-+.+....+| +|+++++.++..+.+.+|+|||||.+-||...+..++.+ ++++.+..+++.+++-||.-+..+.
T Consensus 445 l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakv-IRR~~e~~~kta~vVdHDi~~~dyv 522 (591)
T COG1245 445 LEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKV-IRRFIENNEKTALVVDHDIYMIDYV 522 (591)
T ss_pred hHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHH-HHHHHhhcCceEEEEecceehhhhh
Confidence 6677777777776 677888888888889999999999999999888888555 5556665799999999998776643
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.5e-10 Score=121.03 Aligned_cols=137 Identities=15% Similarity=0.099 Sum_probs=82.3
Q ss_pred CcccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh----------hhcCccccccc----ccccHHHHH----
Q 002722 641 WVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----------AQVGSFVPCDR----ASISVRDCI---- 702 (888)
Q Consensus 641 ~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~----------a~~g~~vp~~~----~~~~~~d~i---- 702 (888)
+..+.+..++|.++-..-++|+||||.||||||+.+.+-.-+ -++|.|-.... +.-+++.-+
T Consensus 598 gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~F 677 (807)
T KOG0066|consen 598 GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKF 677 (807)
T ss_pred CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhc
Confidence 345667778887777778999999999999999987542211 12444421110 111122111
Q ss_pred ----------HHhcCCchhh-hhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCC
Q 002722 703 ----------FARVGAGDCQ-LRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRA 770 (888)
Q Consensus 703 ----------~~~~~~~d~~-~~~~s~f~~e~~~~~~il~-~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~ 770 (888)
+.++|+.... .-..-.++++.+....+.. .+..|+++||||||+.+|.....+++.+|-++ +-
T Consensus 678 Nlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney-----~G 752 (807)
T KOG0066|consen 678 NLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY-----NG 752 (807)
T ss_pred CCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc-----cC
Confidence 2222321110 0111233444444333333 46799999999999999999888887666443 45
Q ss_pred eEEEEecChhHH
Q 002722 771 PTLFATHFHELT 782 (888)
Q Consensus 771 ~~l~~TH~~~l~ 782 (888)
.||++|||..+.
T Consensus 753 gVi~VsHDeRLi 764 (807)
T KOG0066|consen 753 GVIMVSHDERLI 764 (807)
T ss_pred cEEEEeccccee
Confidence 689999997664
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.1e-10 Score=136.62 Aligned_cols=154 Identities=16% Similarity=0.120 Sum_probs=105.4
Q ss_pred CcccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHH---------------------HhhhhcCcccccccc--ccc
Q 002722 641 WVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVN---------------------ILMAQVGSFVPCDRA--SIS 697 (888)
Q Consensus 641 ~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~---------------------~~~a~~g~~vp~~~~--~~~ 697 (888)
+...|.++++|++.+|+.++|+||+||||||.+-.+-.. .+..|+| .|.+++. .-+
T Consensus 1001 P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~-lVsQEP~LF~~T 1079 (1228)
T KOG0055|consen 1001 PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIG-LVSQEPVLFNGT 1079 (1228)
T ss_pred CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcc-eeccCchhhccc
Confidence 446899999999999999999999999999998876321 1223333 3333331 111
Q ss_pred HHHHH------------------------HHhc--CCchhhhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCh
Q 002722 698 VRDCI------------------------FARV--GAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTST 750 (888)
Q Consensus 698 ~~d~i------------------------~~~~--~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~slvllDEp~~gtd~ 750 (888)
+.+.| ...+ |..-.+...-..+|++++|...|.++ ..+|+++||||-|+.||.
T Consensus 1080 IrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDs 1159 (1228)
T KOG0055|consen 1080 IRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDS 1159 (1228)
T ss_pred HHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhh
Confidence 22221 1111 11122222334567777776555554 789999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhhccccccccccccEeEEEEEE
Q 002722 751 YDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSA 807 (888)
Q Consensus 751 ~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (888)
..-..+ ...++.... |.|+|+++|-+...+-+|. +..++|+.+.-
T Consensus 1160 eSErvV-QeALd~a~~--gRT~IvIAHRLSTIqnaD~---------I~Vi~~G~VvE 1204 (1228)
T KOG0055|consen 1160 ESERVV-QEALDRAME--GRTTIVIAHRLSTIQNADV---------IAVLKNGKVVE 1204 (1228)
T ss_pred hhHHHH-HHHHHHhhc--CCcEEEEecchhhhhcCCE---------EEEEECCEEEe
Confidence 665555 777777664 8999999999999888887 77788887653
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.3e-09 Score=118.89 Aligned_cols=131 Identities=19% Similarity=0.155 Sum_probs=99.0
Q ss_pred CCCeEEEEEecCCCChhHHHhhhhHHHhhhhcCcc-----------------------------------------cccc
Q 002722 654 GKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSF-----------------------------------------VPCD 692 (888)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~g~~-----------------------------------------vp~~ 692 (888)
.+|++++|+||||-||||-+|++++-..+. .|-+ +|.-
T Consensus 98 r~G~V~GilG~NGiGKsTalkILaGel~PN-LG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~ 176 (591)
T COG1245 98 RPGKVVGILGPNGIGKSTALKILAGELKPN-LGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKV 176 (591)
T ss_pred CCCcEEEEEcCCCccHHHHHHHHhCccccC-CCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHH
Confidence 578999999999999999999998643211 1110 1100
Q ss_pred -----------cccccHHHHHHHhcCCchhhhhccchhH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHH
Q 002722 693 -----------RASISVRDCIFARVGAGDCQLRGVSTFM-QEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAI 760 (888)
Q Consensus 693 -----------~~~~~~~d~i~~~~~~~d~~~~~~s~f~-~e~~~~~~il~~~~~~slvllDEp~~gtd~~~~~~i~~~i 760 (888)
..+-+.+|.+..++++..-+.+..+.+| +|+++++.++..+.+.+++++|||++=||...+...|. +
T Consensus 177 ~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar-~ 255 (591)
T COG1245 177 VKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAAR-V 255 (591)
T ss_pred hcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHH-H
Confidence 0123456677888888888888888887 56777777777788999999999999999999999855 5
Q ss_pred HHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 761 CEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 761 l~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
++.+++ .+.+||++.||+.+.++...
T Consensus 256 Irel~~-~~k~ViVVEHDLavLD~lsD 281 (591)
T COG1245 256 IRELAE-DGKYVIVVEHDLAVLDYLSD 281 (591)
T ss_pred HHHHhc-cCCeEEEEechHHHHHHhhh
Confidence 566666 48999999999988775443
|
|
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.4e-09 Score=104.18 Aligned_cols=55 Identities=27% Similarity=0.247 Sum_probs=46.9
Q ss_pred HHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHH
Q 002722 727 ASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTA 783 (888)
Q Consensus 727 ~~il~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~ 783 (888)
+.+.+..+..-+.|||||-+||+|.-..++ .+++..+++ .|..+|++||-+-+..
T Consensus 138 ~i~~~rf~~~GiYiLDEPEa~LSp~RQlel-la~l~~la~-sGaQ~IiATHSPiLlA 192 (233)
T COG3910 138 AIFHNRFNGQGIYILDEPEAALSPSRQLEL-LAILRDLAD-SGAQIIIATHSPILLA 192 (233)
T ss_pred HHHHHHhccCceEEecCccccCCHHHHHHH-HHHHHHHHh-cCCeEEEEecChhhee
Confidence 345555788899999999999999988888 788899988 7999999999987653
|
|
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.5e-09 Score=115.94 Aligned_cols=66 Identities=20% Similarity=0.174 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHH-h--CC--CCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 719 FMQEMLETASILK-G--AT--DRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 719 f~~e~~~~~~il~-~--~~--~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
+++++++...+.. . +. +|+++|+|||++|+|+.....+ ..++..+.+ ++++|++||++.+...+++
T Consensus 171 lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l-~~~l~~~~~--~~tii~isH~~~~~~~~d~ 241 (276)
T cd03241 171 ASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAV-GKKLKELSR--SHQVLCITHLPQVAAMADN 241 (276)
T ss_pred cChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHH-HHHHHHHhC--CCEEEEEechHHHHHhcCc
Confidence 5566655544332 2 22 9999999999999999988888 445555543 6899999999988777766
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.3e-08 Score=114.46 Aligned_cols=140 Identities=16% Similarity=0.125 Sum_probs=97.9
Q ss_pred cccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh--------hc----Ccccccccc-cc---------c--
Q 002722 642 VNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA--------QV----GSFVPCDRA-SI---------S-- 697 (888)
Q Consensus 642 ~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a--------~~----g~~vp~~~~-~~---------~-- 697 (888)
+..+-.+++|.+..|+-++||||||||||+|||.+|++--.. .. -.|+|+... .. |
T Consensus 447 g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQvIYP~~ 526 (659)
T KOG0060|consen 447 GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQVIYPLK 526 (659)
T ss_pred CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchhheeeccCc
Confidence 456777899999999999999999999999999999864321 11 245665431 00 0
Q ss_pred -------------H--------HHHHHHhcCCch--hhhhccchhH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhH
Q 002722 698 -------------V--------RDCIFARVGAGD--CQLRGVSTFM-QEMLETASILKGATDRSLIIIDELGRGTSTYDG 753 (888)
Q Consensus 698 -------------~--------~d~i~~~~~~~d--~~~~~~s~f~-~e~~~~~~il~~~~~~slvllDEp~~gtd~~~~ 753 (888)
+ ...|..|.|-.| .......++| +|+++++.+.-...+|.+.||||-|++++..--
T Consensus 527 ~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE 606 (659)
T KOG0060|consen 527 AEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVE 606 (659)
T ss_pred cccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHH
Confidence 0 012445555444 3334445565 778888887777899999999999999998544
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEecChhHHHHhh
Q 002722 754 FGLAWAICEHLVEEIRAPTLFATHFHELTALAH 786 (888)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~ 786 (888)
.++ + +.+.+ .|.|.|-+.|-..+.+.-+
T Consensus 607 ~~~-Y---r~~r~-~giT~iSVgHRkSL~kfHd 634 (659)
T KOG0060|consen 607 GAL-Y---RKCRE-MGITFISVGHRKSLWKFHD 634 (659)
T ss_pred HHH-H---HHHHH-cCCeEEEeccHHHHHhhhh
Confidence 333 3 34444 6999999999988876543
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.4e-09 Score=101.67 Aligned_cols=140 Identities=17% Similarity=0.112 Sum_probs=90.0
Q ss_pred CCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhh-----------cCcc---------c---ccccc--c--cc-H
Q 002722 647 NDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ-----------VGSF---------V---PCDRA--S--IS-V 698 (888)
Q Consensus 647 n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~-----------~g~~---------v---p~~~~--~--~~-~ 698 (888)
+.++|+.+.|+.++|+|.||||||||.|++++++-+.. .|-| + |..+. + ++ +
T Consensus 30 ~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqi 109 (267)
T COG4167 30 KPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQI 109 (267)
T ss_pred cceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhH
Confidence 45778888999999999999999999999998753211 0100 0 11110 0 10 0
Q ss_pred H----------------HHH---HHhcCCc-hhhhhccchhHHHH-HHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHH
Q 002722 699 R----------------DCI---FARVGAG-DCQLRGVSTFMQEM-LETASILKGATDRSLIIIDELGRGTSTYDGFGLA 757 (888)
Q Consensus 699 ~----------------d~i---~~~~~~~-d~~~~~~s~f~~e~-~~~~~il~~~~~~slvllDEp~~gtd~~~~~~i~ 757 (888)
. .+| +.++|+. |...-....++.+. ++++.+.+..-+|+++|.||...++|..-...+.
T Consensus 110 Ld~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~ 189 (267)
T COG4167 110 LDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLI 189 (267)
T ss_pred hcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHH
Confidence 0 122 3344532 22222333444444 4455555557899999999999999999888884
Q ss_pred HHHHHHHHhcCCCeEEEEecChhHHH-Hhhh
Q 002722 758 WAICEHLVEEIRAPTLFATHFHELTA-LAHE 787 (888)
Q Consensus 758 ~~il~~l~~~~~~~~l~~TH~~~l~~-~~~~ 787 (888)
. +.-+|.++.|...|.+|.+..+.+ ++|.
T Consensus 190 N-L~LeLQek~GiSyiYV~QhlG~iKHi~D~ 219 (267)
T COG4167 190 N-LMLELQEKQGISYIYVTQHIGMIKHISDQ 219 (267)
T ss_pred H-HHHHHHHHhCceEEEEechhhHhhhhccc
Confidence 4 445566668999999999987765 4444
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.8e-09 Score=131.98 Aligned_cols=144 Identities=15% Similarity=0.132 Sum_probs=97.3
Q ss_pred CcccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh-------------------hhcCccccccc---c----
Q 002722 641 WVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-------------------AQVGSFVPCDR---A---- 694 (888)
Q Consensus 641 ~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~-------------------a~~g~~vp~~~---~---- 694 (888)
+..-+.++|+=-+.+|-+.+|.|++||||||||+.+++=..+ +..-.||-+.. +
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TV 881 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTV 881 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccch
Confidence 445788899877789999999999999999999998753211 11112322211 0
Q ss_pred --------------------cccHHHHHHHhcCCc---hhhh--hccchhHHHHHHHHHHH-HhCCCC-cEEEEeCCCCC
Q 002722 695 --------------------SISVRDCIFARVGAG---DCQL--RGVSTFMQEMLETASIL-KGATDR-SLIIIDELGRG 747 (888)
Q Consensus 695 --------------------~~~~~d~i~~~~~~~---d~~~--~~~s~f~~e~~~~~~il-~~~~~~-slvllDEp~~g 747 (888)
+...++.++.-+++. |.+. .| +.++.|.+++..|. ..+.+| +||+|||||+|
T Consensus 882 rESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSG 960 (1391)
T KOG0065|consen 882 RESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSG 960 (1391)
T ss_pred HHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCC
Confidence 112344455555543 2222 12 55667776665544 335667 99999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEecChh--HHHHhhh
Q 002722 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFHE--LTALAHE 787 (888)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~--l~~~~~~ 787 (888)
||...+..+ ..+++.+++ .|.++|.+-|.+. +.+..|+
T Consensus 961 LDsqaA~~i-~~~lrkla~-tGqtIlCTIHQPS~~ife~FD~ 1000 (1391)
T KOG0065|consen 961 LDSQAAAIV-MRFLRKLAD-TGQTILCTIHQPSIDIFEAFDE 1000 (1391)
T ss_pred ccHHHHHHH-HHHHHHHHh-cCCeEEEEecCCcHHHHHHHhH
Confidence 999877777 778888988 7999999999964 4455554
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.3e-08 Score=127.42 Aligned_cols=171 Identities=12% Similarity=0.098 Sum_probs=118.0
Q ss_pred ccEEEEcCcCceeeeccCcccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh-------hcCccccccccc-
Q 002722 624 GDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA-------QVGSFVPCDRAS- 695 (888)
Q Consensus 624 ~~l~i~~~rhp~~~~~~~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a-------~~g~~vp~~~~~- 695 (888)
..+.++++.-.. +. .+..+..+|++|.+.+|+.++|+||-|||||+||.++.+=.-+- ..-.|||+..--
T Consensus 517 ~~i~i~~~sfsW-~~-~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ 594 (1381)
T KOG0054|consen 517 NAIEIKNGSFSW-DS-ESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQ 594 (1381)
T ss_pred ceEEEeeeeEec-CC-CCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhh
Confidence 347777764332 11 12345889999999999999999999999999999986522110 112467765521
Q ss_pred -ccHHH--------------HHHHhcC-----------CchhhhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCC
Q 002722 696 -ISVRD--------------CIFARVG-----------AGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGT 748 (888)
Q Consensus 696 -~~~~d--------------~i~~~~~-----------~~d~~~~~~s~f~~e~~~~~~il~~-~~~~slvllDEp~~gt 748 (888)
-++-| +...... ..-.+..+-.++||++++...++++ -.+.+++|||-|.+.+
T Consensus 595 ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAV 674 (1381)
T KOG0054|consen 595 NGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAV 674 (1381)
T ss_pred CCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhh
Confidence 11222 2222222 2222334445777777776555554 6889999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhhccccccccccccEeEEEEEE
Q 002722 749 STYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSA 807 (888)
Q Consensus 749 d~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (888)
|.+.|..|....+..+.+ ++|+|++||..+...-+|. +-.++++++..
T Consensus 675 Dahvg~~if~~ci~~~L~--~KT~ILVTHql~~L~~ad~---------Iivl~~G~I~~ 722 (1381)
T KOG0054|consen 675 DAHVGKHIFEECIRGLLR--GKTVILVTHQLQFLPHADQ---------IIVLKDGKIVE 722 (1381)
T ss_pred hHhhhHHHHHHHHHhhhc--CCEEEEEeCchhhhhhCCE---------EEEecCCeEec
Confidence 999999998888866654 7999999999888888887 66677777644
|
|
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.8e-09 Score=103.31 Aligned_cols=157 Identities=19% Similarity=0.160 Sum_probs=93.3
Q ss_pred cEEEEcCcCceeeeccCcccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh----hcC--------------
Q 002722 625 DIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA----QVG-------------- 686 (888)
Q Consensus 625 ~l~i~~~rhp~~~~~~~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a----~~g-------------- 686 (888)
.+++.+.+..+=+ ..++.-|++++.+.|.-.+++|+|||||||+||++++-.... |.+
T Consensus 13 aievsgl~f~y~~----~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sg 88 (291)
T KOG2355|consen 13 AIEVSGLQFKYKV----SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSG 88 (291)
T ss_pred eEEEeccEEeccc----CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccC
Confidence 4777776653322 135666888888999999999999999999999987521100 000
Q ss_pred --ccc-------ccccc------cccHHHHHHHhcCCchh-------------hhhccchhHHHHHHHHHHHH-hCCCCc
Q 002722 687 --SFV-------PCDRA------SISVRDCIFARVGAGDC-------------QLRGVSTFMQEMLETASILK-GATDRS 737 (888)
Q Consensus 687 --~~v-------p~~~~------~~~~~d~i~~~~~~~d~-------------~~~~~s~f~~e~~~~~~il~-~~~~~s 737 (888)
+|. +.... .++...-||. +|-.|. +.-.....+.+.++...|.. ...+-.
T Consensus 89 dl~YLGgeW~~~~~~agevplq~D~sae~mifg-V~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~Pfk 167 (291)
T KOG2355|consen 89 DLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFG-VGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKPFK 167 (291)
T ss_pred ceeEecccccccccccccccccccccHHHHHhh-ccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhccccee
Confidence 011 00011 1222222222 221111 11112233444455544444 456779
Q ss_pred EEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecCh-hHHHHhhh
Q 002722 738 LIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFH-ELTALAHE 787 (888)
Q Consensus 738 lvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~-~l~~~~~~ 787 (888)
++||||.|-.+|...+..+..-+-+... ..||+++.+||-. .+.....+
T Consensus 168 VLLLDEVTVDLDVlARadLLeFlkeEce-~RgatIVYATHIFDGLe~Wpth 217 (291)
T KOG2355|consen 168 VLLLDEVTVDLDVLARADLLEFLKEECE-QRGATIVYATHIFDGLETWPTH 217 (291)
T ss_pred EEEeeeeEeehHHHHHHHHHHHHHHHHh-hcCcEEEEEeeeccchhhcchh
Confidence 9999999999999888877444444443 4799999999974 46566555
|
|
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.4e-08 Score=112.62 Aligned_cols=139 Identities=17% Similarity=0.081 Sum_probs=90.4
Q ss_pred ccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh---------hhcCcccccccc-ccc-H-------------
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM---------AQVGSFVPCDRA-SIS-V------------- 698 (888)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~---------a~~g~~vp~~~~-~~~-~------------- 698 (888)
..+.+.++|.+++|.-++||||||||||+|+|+++++-.. .+.-.|+|+..- ..+ +
T Consensus 495 ~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~ 574 (728)
T KOG0064|consen 495 DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGTLRDQIIYPDSSEQM 574 (728)
T ss_pred ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCcccceeecCCcHHHH
Confidence 4677788999999999999999999999999999986422 122345555431 000 0
Q ss_pred ------------------HHHHHHhcCCchhhhhccchhH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHH
Q 002722 699 ------------------RDCIFARVGAGDCQLRGVSTFM-QEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWA 759 (888)
Q Consensus 699 ------------------~d~i~~~~~~~d~~~~~~s~f~-~e~~~~~~il~~~~~~slvllDEp~~gtd~~~~~~i~~~ 759 (888)
.+.|..|-|-.|-+......++ +|.++++.+...-.+|...+|||-|++.++.--..|
T Consensus 575 ~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i--- 651 (728)
T KOG0064|consen 575 KRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKI--- 651 (728)
T ss_pred HhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHH---
Confidence 0112233222222222223334 455555655556789999999999999998643333
Q ss_pred HHHHHHhcCCCeEEEEecChhHHHHhh
Q 002722 760 ICEHLVEEIRAPTLFATHFHELTALAH 786 (888)
Q Consensus 760 il~~l~~~~~~~~l~~TH~~~l~~~~~ 786 (888)
.+...+ .|.+.|-+||-+.+-.+-.
T Consensus 652 -~~~ak~-~gi~llsithrpslwk~h~ 676 (728)
T KOG0064|consen 652 -FQAAKD-AGISLLSITHRPSLWKYHT 676 (728)
T ss_pred -HHHHHh-cCceEEEeecCccHHHHHH
Confidence 344444 6999999999988876543
|
|
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.82 E-value=9.6e-09 Score=101.30 Aligned_cols=155 Identities=14% Similarity=0.115 Sum_probs=101.2
Q ss_pred cCceeeec--cCcccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHh----------------------------
Q 002722 632 RHPCVEAQ--DWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL---------------------------- 681 (888)
Q Consensus 632 rhp~~~~~--~~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~---------------------------- 681 (888)
||..+|-. .|.--+.+.++++.+.|++-+++|.+|||||-..|.|+++..
T Consensus 7 rnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ 86 (330)
T COG4170 7 RNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKL 86 (330)
T ss_pred cceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhh
Confidence 45555432 122235567888889999999999999999999999876421
Q ss_pred hhhc---------Ccccccccc-------------c------ccH----HHHHHHhcCCchhhhh---ccchh-HHHHHH
Q 002722 682 MAQV---------GSFVPCDRA-------------S------ISV----RDCIFARVGAGDCQLR---GVSTF-MQEMLE 725 (888)
Q Consensus 682 ~a~~---------g~~vp~~~~-------------~------~~~----~d~i~~~~~~~d~~~~---~~s~f-~~e~~~ 725 (888)
.++- .|.-|.+.. + ++. .-.++.++|..|.-+- ....+ -+|-++
T Consensus 87 ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QK 166 (330)
T COG4170 87 VGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQK 166 (330)
T ss_pred hccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCccee
Confidence 0110 011111110 0 010 0125667776553321 11112 245555
Q ss_pred HHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChh-HHHHhhh
Q 002722 726 TASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHE-LTALAHE 787 (888)
Q Consensus 726 ~~~il~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~-l~~~~~~ 787 (888)
+..+++.|.+|.|+|.||||+.++|.....| ..++..+.+..|.++++++||.. +.+.+++
T Consensus 167 VMIA~A~AnqPrLLIADEPTN~~e~~Tq~Qi-fRLLs~mNQn~~TtILL~s~Dl~~is~W~d~ 228 (330)
T COG4170 167 VMIAIALANQPRLLIADEPTNSMEPTTQAQI-FRLLSRLNQNSNTTILLISHDLQMISQWADK 228 (330)
T ss_pred eeeehhhccCCceEeccCCCcccCccHHHHH-HHHHHHhhccCCceEEEEcccHHHHHHHhhh
Confidence 5556666899999999999999999999988 66777787767899999999965 4578877
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.8e-08 Score=105.07 Aligned_cols=151 Identities=21% Similarity=0.130 Sum_probs=99.7
Q ss_pred cccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHH--------------------hhhhcCcccccccccccHHHH
Q 002722 642 VNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI--------------------LMAQVGSFVPCDRASISVRDC 701 (888)
Q Consensus 642 ~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~--------------------~~a~~g~~vp~~~~~~~~~d~ 701 (888)
..++.++++|.+..|+.++|+||.|+||||++|.+-... .+...-+.||++..-.. |.
T Consensus 275 ~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFN--Dt 352 (497)
T COG5265 275 RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFN--DT 352 (497)
T ss_pred cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehh--hh
Confidence 468899999999999999999999999999999874321 11112235666542211 11
Q ss_pred HHHhc--C-----------------Cchhh------------hhccchhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCCh
Q 002722 702 IFARV--G-----------------AGDCQ------------LRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTST 750 (888)
Q Consensus 702 i~~~~--~-----------------~~d~~------------~~~~s~f~~e~~~~~~il~~~~~~slvllDEp~~gtd~ 750 (888)
++..+ | ..+-+ ..|+---.+|.++++.+.....+|+++++||.|+.+|+
T Consensus 353 i~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt 432 (497)
T COG5265 353 IAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDT 432 (497)
T ss_pred HHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhh
Confidence 11000 0 00000 01111112566666666666889999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhhccccccccccccEeEEEEE
Q 002722 751 YDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 751 ~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
..-.+| .+-+..+.. |.|++++-|-+.-.--+|. ...++++.+.
T Consensus 433 ~te~~i-q~~l~~~~~--~rttlviahrlsti~~ade---------iivl~~g~i~ 476 (497)
T COG5265 433 HTEQAI-QAALREVSA--GRTTLVIAHRLSTIIDADE---------IIVLDNGRIV 476 (497)
T ss_pred hHHHHH-HHHHHHHhC--CCeEEEEeehhhhccCCce---------EEEeeCCEEE
Confidence 998888 666666664 8899999998766555665 5556666653
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.1e-08 Score=112.46 Aligned_cols=154 Identities=18% Similarity=0.185 Sum_probs=109.6
Q ss_pred cCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHh---------------------hhhcCcccccccccc------cH
Q 002722 646 PNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL---------------------MAQVGSFVPCDRASI------SV 698 (888)
Q Consensus 646 ~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~---------------------~a~~g~~vp~~~~~~------~~ 698 (888)
..|++|+..+|++++|.|-=|||+|-+++.+.++.- ..+.-.|||-+...- ++
T Consensus 275 ~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI 354 (500)
T COG1129 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSI 354 (500)
T ss_pred eeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcH
Confidence 458889999999999999999999999999876321 111223566544221 11
Q ss_pred HH--------------------------HHHHhcCC-chhhhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCh
Q 002722 699 RD--------------------------CIFARVGA-GDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTST 750 (888)
Q Consensus 699 ~d--------------------------~i~~~~~~-~d~~~~~~s~f~~e~~~~~~il~~-~~~~slvllDEp~~gtd~ 750 (888)
.+ +...+++. ..+.....+++|++-+|...+.+. +++|+++||||||+|.|.
T Consensus 355 ~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDV 434 (500)
T COG1129 355 AENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDV 434 (500)
T ss_pred HHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCccc
Confidence 11 12222221 122334567888887777666654 789999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCeEEEEecC-hhHHHHhhhccccccccccccEeEEEEEEEEE
Q 002722 751 YDGFGLAWAICEHLVEEIRAPTLFATHF-HELTALAHENANEFNTKQMVGVANYHVSAHID 810 (888)
Q Consensus 751 ~~~~~i~~~il~~l~~~~~~~~l~~TH~-~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 810 (888)
-....| +.++..+++ .|..+|++|-+ +|+..+||+ +-.+..+.+.....
T Consensus 435 GAK~eI-y~li~~lA~-~G~ail~iSSElpEll~~~DR---------IlVm~~Gri~~e~~ 484 (500)
T COG1129 435 GAKAEI-YRLIRELAA-EGKAILMISSELPELLGLSDR---------ILVMREGRIVGELD 484 (500)
T ss_pred chHHHH-HHHHHHHHH-CCCEEEEEeCChHHHHhhCCE---------EEEEECCEEEEEec
Confidence 999999 999999998 68988887777 678889998 66677777665443
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.2e-08 Score=112.98 Aligned_cols=74 Identities=19% Similarity=0.156 Sum_probs=57.9
Q ss_pred hhhccchhHHHHHHHHHHH----HhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 712 QLRGVSTFMQEMLETASIL----KGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 712 ~~~~~s~f~~e~~~~~~il----~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
+.+...|+|++..|...+. ..++.+.|+||||||.||-+.|...+ ..++..|.+ .|-+||++-|++++...||.
T Consensus 816 LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kL-l~VL~rLvd-~GnTViVIEHNLdVIk~AD~ 893 (935)
T COG0178 816 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKL-LEVLHRLVD-KGNTVIVIEHNLDVIKTADW 893 (935)
T ss_pred cCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHH-HHHHHHHHh-CCCEEEEEecccceEeecCE
Confidence 3344567775544433332 34678899999999999999999999 778889988 79999999999988776665
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.6e-08 Score=108.10 Aligned_cols=162 Identities=16% Similarity=0.075 Sum_probs=100.2
Q ss_pred CcCceeeecc------Ccc-cccCCccccCCCCeEEEEEecCCCChhHHHhhhhH-HHhh---------hhcCcccccc-
Q 002722 631 SRHPCVEAQD------WVN-FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGV-NILM---------AQVGSFVPCD- 692 (888)
Q Consensus 631 ~rhp~~~~~~------~~~-~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~-~~~~---------a~~g~~vp~~- 692 (888)
..||.+.... ++. .+...++++.+...-+.++|+||+||||++|++.+ +.-. -.+|.|..-.
T Consensus 358 ~~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhv 437 (582)
T KOG0062|consen 358 LSPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHV 437 (582)
T ss_pred CCCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhh
Confidence 4677765421 122 34455666656566789999999999999998753 1100 0011110000
Q ss_pred ----------------c-c-cccHHHHHHHhcCCchhh-hhccchhHHHHH-HHHHHHHhCCCCcEEEEeCCCCCCChhh
Q 002722 693 ----------------R-A-SISVRDCIFARVGAGDCQ-LRGVSTFMQEML-ETASILKGATDRSLIIIDELGRGTSTYD 752 (888)
Q Consensus 693 ----------------~-~-~~~~~d~i~~~~~~~d~~-~~~~s~f~~e~~-~~~~il~~~~~~slvllDEp~~gtd~~~ 752 (888)
. . .-.-+.+-+.++|+.-.+ .....++|++++ +++.+.....+|-|++|||||+-||...
T Consensus 438 d~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~ds 517 (582)
T KOG0062|consen 438 DFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDS 517 (582)
T ss_pred hHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHH
Confidence 0 0 001122446677865444 344577876654 5555666678999999999999999876
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEecChhHHH-HhhhccccccccccccEeEEEEE
Q 002722 753 GFGLAWAICEHLVEEIRAPTLFATHFHELTA-LAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 753 ~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~-~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
--+++.| |.. .+-.||++||+.++.. +|.. +..+.+++|.
T Consensus 518 l~AL~~A----l~~-F~GGVv~VSHd~~fi~~~c~E---------~Wvve~g~vt 558 (582)
T KOG0062|consen 518 LGALAKA----LKN-FNGGVVLVSHDEEFISSLCKE---------LWVVEDGKVT 558 (582)
T ss_pred HHHHHHH----HHh-cCCcEEEEECcHHHHhhcCce---------eEEEcCCcEE
Confidence 6666544 444 4557899999999886 5555 6667666664
|
|
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=98.70 E-value=9.4e-08 Score=100.08 Aligned_cols=52 Identities=17% Similarity=0.218 Sum_probs=37.5
Q ss_pred CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 733 ATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 733 ~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
..+.+++|||||.+++|+.....+ ..++..+.+ ++-+|++||..++...++.
T Consensus 156 ~~~~p~~ilDEvd~~LD~~~~~~l-~~~l~~~~~--~~Q~ii~Th~~~~~~~a~~ 207 (220)
T PF02463_consen 156 YKPSPFLILDEVDAALDEQNRKRL-ADLLKELSK--QSQFIITTHNPEMFEDADK 207 (220)
T ss_dssp CS--SEEEEESTTTTS-HHHHHHH-HHHHHHHTT--TSEEEEE-S-HHHHTT-SE
T ss_pred cccccccccccccccccccccccc-ccccccccc--ccccccccccccccccccc
Confidence 567899999999999999988887 555555553 5889999999998877765
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1e-07 Score=122.71 Aligned_cols=74 Identities=16% Similarity=0.136 Sum_probs=57.3
Q ss_pred hhhccchhHHHHHHHHHHHHhC----CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 712 QLRGVSTFMQEMLETASILKGA----TDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 712 ~~~~~s~f~~e~~~~~~il~~~----~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
+.+..+|+|++..|...+.... ..+.|+||||||.||++.|...+ ..++..|.+ .|.++|++.|++++.+.+|.
T Consensus 1693 LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~L-l~~l~~L~~-~g~tvivieH~~~~i~~aD~ 1770 (1809)
T PRK00635 1693 LGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSAL-LVQLRTLVS-LGHSVIYIDHDPALLKQADY 1770 (1809)
T ss_pred CCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHH-HHHHHHHHh-cCCeEEEEeCCHHHHHhCCE
Confidence 3445567875554443333332 24689999999999999999999 667888887 79999999999999988876
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=9.9e-08 Score=119.75 Aligned_cols=153 Identities=14% Similarity=0.126 Sum_probs=106.2
Q ss_pred cccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhh------------hhcC--------cccccccc-------
Q 002722 642 VNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM------------AQVG--------SFVPCDRA------- 694 (888)
Q Consensus 642 ~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~------------a~~g--------~~vp~~~~------- 694 (888)
...|.++++|.+.+|+-++|+|.-|||||||+.++-.++-. +++| +.+|++..
T Consensus 1152 lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR 1231 (1381)
T KOG0054|consen 1152 LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVR 1231 (1381)
T ss_pred CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccc
Confidence 35899999999999999999999999999999987544321 1222 35677652
Q ss_pred -cccHHH-----H---HHHhc-----------CCchhhhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhH
Q 002722 695 -SISVRD-----C---IFARV-----------GAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDG 753 (888)
Q Consensus 695 -~~~~~d-----~---i~~~~-----------~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~slvllDEp~~gtd~~~~ 753 (888)
.+.+++ . .+.+. |+...+..|-+.||++.+|+..+.++ ..+.++++|||.|++.|+..-
T Consensus 1232 ~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD 1311 (1381)
T KOG0054|consen 1232 FNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETD 1311 (1381)
T ss_pred cccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHH
Confidence 233332 1 12222 34445566778899999998777765 678899999999999999765
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhhccccccccccccEeEEEEE
Q 002722 754 FGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVS 806 (888)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~~~~~~~~~~~~~v~~~~~~ 806 (888)
.-|-..|.+++ .+||||.+-|-..-.--+|+ +-.+.++++.
T Consensus 1312 ~lIQ~tIR~~F---~dcTVltIAHRl~TVmd~Dr---------VlVld~G~v~ 1352 (1381)
T KOG0054|consen 1312 ALIQKTIREEF---KDCTVLTIAHRLNTVMDSDR---------VLVLDAGRVV 1352 (1381)
T ss_pred HHHHHHHHHHh---cCCeEEEEeeccchhhhcCe---------EEEeeCCeEe
Confidence 55533333444 37999999998655444555 4555666553
|
|
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.2e-07 Score=101.49 Aligned_cols=116 Identities=18% Similarity=0.185 Sum_probs=62.5
Q ss_pred eEEEEEecCCCChhHHHhhhhHHHhhhhcCcccccccccccHHH---HHHHhcC-Cch-hhhhccchh-----HHHHHHH
Q 002722 657 WFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRD---CIFARVG-AGD-CQLRGVSTF-----MQEMLET 726 (888)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~~~~~a~~g~~vp~~~~~~~~~d---~i~~~~~-~~d-~~~~~~s~f-----~~e~~~~ 726 (888)
.-++|.||||||||||+|.+++.......-..+.. ..+...| .+...++ ..+ .+....+.+ ..+|..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g--~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~- 188 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRG--KKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMM- 188 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECC--EEeecchhHHHHHHHhcccccccccccccccccchHHHHHHH-
Confidence 56899999999999999999876543211111111 1111111 1211111 111 111100110 112221
Q ss_pred HHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 727 ASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 727 ~~il~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
+..+.+|+++|+|||++. ....++++.+. .|.++|++||+..+....++
T Consensus 189 ---~i~~~~P~villDE~~~~-------e~~~~l~~~~~--~G~~vI~ttH~~~~~~~~~r 237 (270)
T TIGR02858 189 ---LIRSMSPDVIVVDEIGRE-------EDVEALLEALH--AGVSIIATAHGRDVEDLYKR 237 (270)
T ss_pred ---HHHhCCCCEEEEeCCCcH-------HHHHHHHHHHh--CCCEEEEEechhHHHHHHhC
Confidence 222468999999999742 22255666654 48999999999877665543
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.8e-08 Score=105.03 Aligned_cols=65 Identities=12% Similarity=0.070 Sum_probs=44.4
Q ss_pred hhHHHHH-HHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH-HHhhh
Q 002722 718 TFMQEML-ETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (888)
Q Consensus 718 ~f~~e~~-~~~~il~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~-~~~~~ 787 (888)
.|+++.+ +++.+.....+|.|+.|||||+.+|-.....+ -.||.. ...|.|+++||..+. ..|..
T Consensus 412 kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWL----dNYLQg-WkKTLLIVSHDQgFLD~VCtd 478 (807)
T KOG0066|consen 412 KFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWL----DNYLQG-WKKTLLIVSHDQGFLDSVCTD 478 (807)
T ss_pred ccCCceeeehhHHHHHhcCceeeeecCCccccccceeeeh----hhHHhh-hhheeEEEecccchHHHHHHH
Confidence 3444432 23444445679999999999999997543333 456655 778999999998765 35554
|
|
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.3e-07 Score=94.88 Aligned_cols=124 Identities=16% Similarity=0.102 Sum_probs=67.1
Q ss_pred CCCCeEEEEEecCCCChhHHH-hhhhHHHhhhhcCcccccccccccHHHHHHHhcCCch--hhhhcc-------chhHH-
Q 002722 653 RGKSWFQIITGPNMGGKSTFI-RQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGD--CQLRGV-------STFMQ- 721 (888)
Q Consensus 653 ~~~~~~~~itGpNg~GKSTll-r~i~~~~~~a~~g~~vp~~~~~~~~~d~i~~~~~~~d--~~~~~~-------s~f~~- 721 (888)
+.+|++++|+||||+||||+. +.++.......-+.|+..+...-.+... +.++|..- ....+. ..++.
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~-~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 99 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQ-MMSLGYDINKKLISGKLLYIPVYPLLSGN 99 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHH-HHHhCCchHHHhhcCcEEEEEecccccCh
Confidence 467889999999999999995 5555443333334455544322222222 23344211 111000 00111
Q ss_pred -H-HHHHHHHHHh--CCCCcEEEEeCCCCCC----ChhhHHHHHHHHHHHHHhcCCCeEEEEecChh
Q 002722 722 -E-MLETASILKG--ATDRSLIIIDELGRGT----STYDGFGLAWAICEHLVEEIRAPTLFATHFHE 780 (888)
Q Consensus 722 -e-~~~~~~il~~--~~~~slvllDEp~~gt----d~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~ 780 (888)
+ ...+..++.. ..+++++++|||++++ |+.....+ ..+++.+.+ .|++++ +||+..
T Consensus 100 ~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l-~~~l~~l~~-~g~tvi-~t~~~~ 163 (230)
T PRK08533 100 SEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDL-MAFFKRISS-LNKVII-LTANPK 163 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHH-HHHHHHHHh-CCCEEE-EEeccc
Confidence 1 1112223333 2478999999999998 55545555 556676765 477554 556543
|
|
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.7e-07 Score=96.65 Aligned_cols=47 Identities=13% Similarity=0.110 Sum_probs=31.5
Q ss_pred CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecC-hhHHHHh
Q 002722 733 ATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHF-HELTALA 785 (888)
Q Consensus 733 ~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~-~~l~~~~ 785 (888)
..+|+++|+|||++++|+.....+ ++.+.+ .+ .++++||+ .++..++
T Consensus 208 ~~~~~illlDEp~a~LD~~~~~~l----~~~l~~-~~-q~ii~~~~~~~~~~~~ 255 (270)
T cd03242 208 SGEYPVLLLDDVLAELDLGRQAAL----LDAIEG-RV-QTFVTTTDLADFDALW 255 (270)
T ss_pred hCCCcEEEEcCcchhcCHHHHHHH----HHHhhc-CC-CEEEEeCCchhccchh
Confidence 368899999999999999877766 334433 23 45555555 4444443
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.3e-06 Score=92.72 Aligned_cols=61 Identities=18% Similarity=0.131 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHH---hCCCC-cEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH
Q 002722 720 MQEMLETASILK---GATDR-SLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT 782 (888)
Q Consensus 720 ~~e~~~~~~il~---~~~~~-slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~ 782 (888)
+.|.+++..++. .+... +++++|||-.++.|.-...++ .++..+.. .+..+|++||.+.+.
T Consensus 238 S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~-~~l~~~~~-~~~QviitTHSp~il 302 (303)
T PF13304_consen 238 SSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLI-ELLKELSK-KNIQVIITTHSPFIL 302 (303)
T ss_dssp -HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHH-HHHHHTGG-GSSEEEEEES-GGG-
T ss_pred CHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHH-HHHHhhCc-cCCEEEEeCccchhc
Confidence 666666633332 23344 999999999999998777774 44454444 478999999998753
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=2e-06 Score=86.54 Aligned_cols=52 Identities=19% Similarity=0.349 Sum_probs=34.2
Q ss_pred hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 732 GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 732 ~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
...++.++++|||+. ++..+ ... ...+..+.+ .+.++|+++|+......+++
T Consensus 93 ~l~~~~~lllDE~~~-~e~~~-~~~-~~~l~~~~~-~~~~~i~v~h~~~~~~~~~~ 144 (174)
T PRK13695 93 ALEEADVIIIDEIGK-MELKS-PKF-VKAVEEVLD-SEKPVIATLHRRSVHPFVQE 144 (174)
T ss_pred ccCCCCEEEEECCCc-chhhh-HHH-HHHHHHHHh-CCCeEEEEECchhhHHHHHH
Confidence 356899999999743 33333 223 233344444 68999999999766666665
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.2e-06 Score=85.91 Aligned_cols=121 Identities=13% Similarity=0.056 Sum_probs=69.0
Q ss_pred EEEEEecCCCChhHHHhhhhHHHhh-hhcCcccccccccccHHHHHHHhcCCchh----------hhhccchhHHHHHH-
Q 002722 658 FQIITGPNMGGKSTFIRQVGVNILM-AQVGSFVPCDRASISVRDCIFARVGAGDC----------QLRGVSTFMQEMLE- 725 (888)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~~~~~-a~~g~~vp~~~~~~~~~d~i~~~~~~~d~----------~~~~~s~f~~e~~~- 725 (888)
+++|.||.|+|||||.-+++.-... ..-..|+..+...-.+ .+.+.++|..-. .......++.+..+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~-~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~ 79 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEEL-IENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSL 79 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHH-HHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhh
Confidence 3689999999999999887654322 2223444433321111 222333443211 11111222232222
Q ss_pred ----HHHHHH--hCCCCcEEEEeCCCCCCC---hhhHHHHHHHHHHHHHhcCCCeEEEEecChhH
Q 002722 726 ----TASILK--GATDRSLIIIDELGRGTS---TYDGFGLAWAICEHLVEEIRAPTLFATHFHEL 781 (888)
Q Consensus 726 ----~~~il~--~~~~~slvllDEp~~gtd---~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l 781 (888)
+..+.. ...+++++++|||+..+| +.....+ ..++..+.+ .|+++|+++|....
T Consensus 80 ~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i-~~l~~~l~~-~g~tvi~v~~~~~~ 142 (187)
T cd01124 80 RLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEI-RRLLFALKR-FGVTTLLTSEQSGL 142 (187)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHH-HHHHHHHHH-CCCEEEEEeccccC
Confidence 111221 235789999999999998 5444444 567777776 69999999998764
|
A related protein is found in archaea. |
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.9e-06 Score=80.91 Aligned_cols=122 Identities=20% Similarity=0.202 Sum_probs=64.5
Q ss_pred EEEEEecCCCChhHHHhhhhHHHhhh-hcCcccccccccccHHHHH--HHhcCCchhhh--hcc-chh-HHHHHHHHHHH
Q 002722 658 FQIITGPNMGGKSTFIRQVGVNILMA-QVGSFVPCDRASISVRDCI--FARVGAGDCQL--RGV-STF-MQEMLETASIL 730 (888)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~~~~~a-~~g~~vp~~~~~~~~~d~i--~~~~~~~d~~~--~~~-s~f-~~e~~~~~~il 730 (888)
+++|+||||+||||+++.++...... ..-.|+..+.......... +...+..+... ... ... .....+....+
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERL 80 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHH
Confidence 36899999999999999997754321 1112333332211111111 11111111110 000 011 11222333444
Q ss_pred HhCCCCcEEEEeCCCCCCChh---------hHHHHHHHHHHHHHhcCCCeEEEEecChh
Q 002722 731 KGATDRSLIIIDELGRGTSTY---------DGFGLAWAICEHLVEEIRAPTLFATHFHE 780 (888)
Q Consensus 731 ~~~~~~slvllDEp~~gtd~~---------~~~~i~~~il~~l~~~~~~~~l~~TH~~~ 780 (888)
....++.++++||+..-.+.. ........+.+...+ .++++++++|...
T Consensus 81 ~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~vv~~~~~~~ 138 (165)
T cd01120 81 RERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARK-GGVTVIFTLQVPS 138 (165)
T ss_pred HhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhc-CCceEEEEEecCC
Confidence 446788999999999543332 122333666666554 6999999999864
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=98.16 E-value=4.1e-06 Score=103.53 Aligned_cols=83 Identities=17% Similarity=0.143 Sum_probs=66.5
Q ss_pred HHhcCCchh-hhhccchhHHHHHHHHHHHHhC-CC--CcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecC
Q 002722 703 FARVGAGDC-QLRGVSTFMQEMLETASILKGA-TD--RSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHF 778 (888)
Q Consensus 703 ~~~~~~~d~-~~~~~s~f~~e~~~~~~il~~~-~~--~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~ 778 (888)
+..+|+... +.+..+++|++++|...+.+.. .+ +.++|||||++|||+.+...+ ..+++.+.+ .|.++|++||+
T Consensus 471 L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L-~~~L~~L~~-~G~TVIvVeHd 548 (924)
T TIGR00630 471 LIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERL-INTLKRLRD-LGNTVIVVEHD 548 (924)
T ss_pred HhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHH-HHHHHHHHh-CCCEEEEEECC
Confidence 455666543 5677889998888877666653 33 489999999999999999999 777788877 59999999999
Q ss_pred hhHHHHhhh
Q 002722 779 HELTALAHE 787 (888)
Q Consensus 779 ~~l~~~~~~ 787 (888)
++....+|+
T Consensus 549 ~~~i~~aD~ 557 (924)
T TIGR00630 549 EETIRAADY 557 (924)
T ss_pred HHHHhhCCE
Confidence 988877777
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.2e-05 Score=85.16 Aligned_cols=125 Identities=17% Similarity=0.093 Sum_probs=70.0
Q ss_pred CCCCeEEEEEecCCCChhHHHhhhhHHH-hhhhcCcccccccccccHHHHHHHhcCC--chhhhhcc-----------ch
Q 002722 653 RGKSWFQIITGPNMGGKSTFIRQVGVNI-LMAQVGSFVPCDRASISVRDCIFARVGA--GDCQLRGV-----------ST 718 (888)
Q Consensus 653 ~~~~~~~~itGpNg~GKSTllr~i~~~~-~~a~~g~~vp~~~~~~~~~d~i~~~~~~--~d~~~~~~-----------s~ 718 (888)
+..|.+++|+||+|+|||||..+++.-. ....-+.|+..+...-.+..+ +..+|. .+.+..+. +.
T Consensus 22 ~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~-~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 100 (234)
T PRK06067 22 IPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQ-MESVKIDISDFFLWGYLRIFPLNTEGFEW 100 (234)
T ss_pred CcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHH-HHHCCCChhHHHhCCCceEEecccccccc
Confidence 4678999999999999999999986432 223344555554432222222 333442 22211111 11
Q ss_pred hHHHHHHHHHHHH-h--CCCCcEEEEeCCCCCCChhhHHHHHHHH---HHHHHhcCCCeEEEEecChh
Q 002722 719 FMQEMLETASILK-G--ATDRSLIIIDELGRGTSTYDGFGLAWAI---CEHLVEEIRAPTLFATHFHE 780 (888)
Q Consensus 719 f~~e~~~~~~il~-~--~~~~slvllDEp~~gtd~~~~~~i~~~i---l~~l~~~~~~~~l~~TH~~~ 780 (888)
....+.++...+. . ..+++++++|||+..++..+...+ ..+ +..+.+ .|+++++++|...
T Consensus 101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~-~~~l~~l~~l~~-~g~tvllt~~~~~ 166 (234)
T PRK06067 101 NSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDI-LNFLTEAKNLVD-LGKTILITLHPYA 166 (234)
T ss_pred CcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHH-HHHHHHHHHHHh-CCCEEEEEecCCc
Confidence 1122233322222 2 248899999999965554333333 223 344455 5889999999754
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=98.12 E-value=5.6e-06 Score=102.60 Aligned_cols=84 Identities=17% Similarity=0.165 Sum_probs=67.4
Q ss_pred HHHhcCCchh-hhhccchhHHHHHHHHHHHHh-CCC--CcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEec
Q 002722 702 IFARVGAGDC-QLRGVSTFMQEMLETASILKG-ATD--RSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATH 777 (888)
Q Consensus 702 i~~~~~~~d~-~~~~~s~f~~e~~~~~~il~~-~~~--~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH 777 (888)
.+..+|+.+. +.+...++|++++|...+.+. +.+ +.++|||||++|||+.+...+ ..+++.+.+ .|.++|++||
T Consensus 472 ~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L-~~~L~~L~~-~G~TVIvVeH 549 (943)
T PRK00349 472 FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRL-IETLKHLRD-LGNTLIVVEH 549 (943)
T ss_pred HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHH-HHHHHHHHh-CCCEEEEEeC
Confidence 4566777653 677888999888877766665 344 389999999999999999999 677788876 6999999999
Q ss_pred ChhHHHHhhh
Q 002722 778 FHELTALAHE 787 (888)
Q Consensus 778 ~~~l~~~~~~ 787 (888)
+++....+|+
T Consensus 550 ~~~~i~~aD~ 559 (943)
T PRK00349 550 DEDTIRAADY 559 (943)
T ss_pred CHHHHHhCCE
Confidence 9888777776
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.7e-05 Score=74.07 Aligned_cols=117 Identities=16% Similarity=0.054 Sum_probs=59.1
Q ss_pred CeEEEEEecCCCChhHHHhhhhHHHhhhh-cCcccccccccccHHHHHHHhcCCchhhhhccchhHHH-HHHHHHHHHhC
Q 002722 656 SWFQIITGPNMGGKSTFIRQVGVNILMAQ-VGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQE-MLETASILKGA 733 (888)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~~~~~a~-~g~~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e-~~~~~~il~~~ 733 (888)
+..++|+||+|+||||+++.++....... ...++.++........... .............. ..+........
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL-----LIIVGGKKASGSGELRLRLALALARK 76 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH-----hhhhhccCCCCCHHHHHHHHHHHHHh
Confidence 56899999999999999999877544332 1122222222111111000 00000011111111 11111111112
Q ss_pred CCCcEEEEeCCCCCCChhhHHHHHH-----HHHHHHHhcCCCeEEEEecC
Q 002722 734 TDRSLIIIDELGRGTSTYDGFGLAW-----AICEHLVEEIRAPTLFATHF 778 (888)
Q Consensus 734 ~~~slvllDEp~~gtd~~~~~~i~~-----~il~~l~~~~~~~~l~~TH~ 778 (888)
..++++++||+.+-.+......... ........ .+..+|+++|.
T Consensus 77 ~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~ 125 (148)
T smart00382 77 LKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSE-KNLTVILTTND 125 (148)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhc-CCCEEEEEeCC
Confidence 3369999999999998866554422 11222222 46778888884
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.8e-05 Score=79.44 Aligned_cols=145 Identities=21% Similarity=0.190 Sum_probs=78.7
Q ss_pred CeEEEEEecCCCChhHHHhhhhHHHhhhhc-Cc-ccccccccccHHHHHHHhcCCchhhhhccchhHHHHHHHHHHHHhC
Q 002722 656 SWFQIITGPNMGGKSTFIRQVGVNILMAQV-GS-FVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGA 733 (888)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~~~~~a~~-g~-~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~ 733 (888)
|.+++++||.|+||||++..++.-...+.. .. +.|.-..+.+ ...+.+++|..-.. ..... ..+..+.. ....
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~-~~~i~~~lg~~~~~-~~~~~-~~~~~~~~--~~~~ 76 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYG-EGKVVSRIGLSREA-IPVSS-DTDIFELI--EEEG 76 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEecccccccc-CCcEecCCCCcccc-eEeCC-hHHHHHHH--HhhC
Confidence 678999999999999999877553322211 11 2222111111 12345555532110 00011 11111111 1123
Q ss_pred CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecC-----------hhHHHHhhhccccccccccccEeE
Q 002722 734 TDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHF-----------HELTALAHENANEFNTKQMVGVAN 802 (888)
Q Consensus 734 ~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~-----------~~l~~~~~~~~~~~~~~~~~~v~~ 802 (888)
.+.++|++||... ++. ..+ ..+++.+.. .|.+++++.++ ..+..++|. +..++.
T Consensus 77 ~~~dvviIDEaq~-l~~---~~v-~~l~~~l~~-~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~---------V~~l~~ 141 (190)
T PRK04296 77 EKIDCVLIDEAQF-LDK---EQV-VQLAEVLDD-LGIPVICYGLDTDFRGEPFEGSPYLLALADK---------VTELKA 141 (190)
T ss_pred CCCCEEEEEcccc-CCH---HHH-HHHHHHHHH-cCCeEEEEecCcccccCcCchHHHHHHhcCe---------EEEeeE
Confidence 4678999999943 322 223 456777776 69999999998 345556665 444555
Q ss_pred EEEEEEEEcCCCcEEEeEEecCC
Q 002722 803 YHVSAHIDSTSRKLTMLYKVEPG 825 (888)
Q Consensus 803 ~~~~~~~~~~~~~~~~~y~l~~G 825 (888)
.++.+ +..-+|++|+..|
T Consensus 142 vC~~C-----g~~a~~~~r~~~~ 159 (190)
T PRK04296 142 ICVHC-----GRKATMNQRLIDG 159 (190)
T ss_pred Ecccc-----CCccceEEEEeCC
Confidence 45444 4566788888853
|
|
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.01 E-value=9.3e-06 Score=88.59 Aligned_cols=133 Identities=18% Similarity=0.171 Sum_probs=84.0
Q ss_pred CCCeEEEEEecCCCChhHHHhhhhHHHhhhhcC-------ccccccc---ccccH-----------------HHHHHHhc
Q 002722 654 GKSWFQIITGPNMGGKSTFIRQVGVNILMAQVG-------SFVPCDR---ASISV-----------------RDCIFARV 706 (888)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~g-------~~vp~~~---~~~~~-----------------~d~i~~~~ 706 (888)
...++++..|.||-|||||+|++++..-....| +|-|..- ..-++ +...+.-+
T Consensus 365 sdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykpqkispK~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL 444 (592)
T KOG0063|consen 365 SDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPL 444 (592)
T ss_pred CCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccccccCccccchHHHHHHHHhHhhhcCHHHHHhhhhhh
Confidence 456799999999999999999998743222111 1222111 00010 11112222
Q ss_pred CCchhhhhccchhH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHH-H
Q 002722 707 GAGDCQLRGVSTFM-QEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTA-L 784 (888)
Q Consensus 707 ~~~d~~~~~~s~f~-~e~~~~~~il~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~-~ 784 (888)
...+-+.+..-+++ +|+++++.++..-.+.++.++|||.+=+|...+...+.-+.+.+.. .+.+..++.||.-.+. +
T Consensus 445 ~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilh-akktafvVEhdfImaTYl 523 (592)
T KOG0063|consen 445 QIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILH-AKKTAFVVEHDFIMATYL 523 (592)
T ss_pred hHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHh-ccchhhhhhhHHHHHHhh
Confidence 33333444444454 6777888888776788999999999999997766665444455544 6788899999987765 4
Q ss_pred hhh
Q 002722 785 AHE 787 (888)
Q Consensus 785 ~~~ 787 (888)
+++
T Consensus 524 adr 526 (592)
T KOG0063|consen 524 ADR 526 (592)
T ss_pred cce
Confidence 444
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.6e-05 Score=98.17 Aligned_cols=141 Identities=20% Similarity=0.231 Sum_probs=92.0
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHh---------------------------hhhcCccc-------
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL---------------------------MAQVGSFV------- 689 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~---------------------------~a~~g~~v------- 689 (888)
.+.++++.-+++|+++++.||.||||||||+.+++..- .+|...-+
T Consensus 129 ~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVre 208 (1391)
T KOG0065|consen 129 QILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRE 208 (1391)
T ss_pred eeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEee
Confidence 46678888889999999999999999999999875320 00000000
Q ss_pred ----------ccc----cccc----cHHHHHHHhcCCc--------hhhhhccchhHHHHHHHHHHHHhCCCCcEEEEeC
Q 002722 690 ----------PCD----RASI----SVRDCIFARVGAG--------DCQLRGVSTFMQEMLETASILKGATDRSLIIIDE 743 (888)
Q Consensus 690 ----------p~~----~~~~----~~~d~i~~~~~~~--------d~~~~~~s~f~~e~~~~~~il~~~~~~slvllDE 743 (888)
|+. ..+. ...|.++.-+|+. ++..+|.|. +|.+++..+=..+.+++.+.+||
T Consensus 209 TldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSG--GerKRvsi~E~~v~~~~~~~~De 286 (1391)
T KOG0065|consen 209 TLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSG--GERKRVSIGEMLVGPASILFWDE 286 (1391)
T ss_pred hhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccC--cccceeeeeeeeecCcceeeeec
Confidence 100 0001 1345566666643 233333332 44444443334478999999999
Q ss_pred CCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecC--hhHHHHhhh
Q 002722 744 LGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHF--HELTALAHE 787 (888)
Q Consensus 744 p~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~--~~l~~~~~~ 787 (888)
+++|+|......++.++ +.+....+.+++++-|. .+..++.|.
T Consensus 287 ~t~GLDSsTal~iik~l-r~~a~~~~~t~~vsi~Q~s~~~~~lFD~ 331 (1391)
T KOG0065|consen 287 ITRGLDSSTAFQIIKAL-RQLAHITGATALVSILQPSPEIYDLFDD 331 (1391)
T ss_pred ccccccHHHHHHHHHHH-HHHHhhhcceEEEEeccCChHHHHhhhh
Confidence 99999999999996655 44555468888888888 455667666
|
|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=97.91 E-value=3.6e-05 Score=79.20 Aligned_cols=115 Identities=13% Similarity=0.121 Sum_probs=57.9
Q ss_pred eEEEEEecCCCChhHHHhhhhHHHhhhhcCccccccc-ccccHHHHHHHhcCCchhhhhccchhHHHHHHHHHHHHhCCC
Q 002722 657 WFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDR-ASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATD 735 (888)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~~~~~a~~g~~vp~~~-~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~~~ 735 (888)
.+++|+||+||||||+++.+.........+..+-.+. .++. .......+. .........+|... +..+++ .+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~-~~~~~~~i~-q~~vg~~~~~~~~~---i~~aLr--~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFV-HESKRSLIN-QREVGLDTLSFENA---LKAALR--QD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcccc-ccCccceee-ecccCCCccCHHHH---HHHHhc--CC
Confidence 3789999999999999998655332111121111111 0000 000000000 00111112233322 222332 47
Q ss_pred CcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 736 RSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 736 ~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
|+++++||+. |+.. + ..+++. +. .|..++.++|........++
T Consensus 75 pd~ii~gEir---d~e~---~-~~~l~~-a~-~G~~v~~t~Ha~~~~~~~~R 117 (198)
T cd01131 75 PDVILVGEMR---DLET---I-RLALTA-AE-TGHLVMSTLHTNSAAKTIDR 117 (198)
T ss_pred cCEEEEcCCC---CHHH---H-HHHHHH-HH-cCCEEEEEecCCcHHHHHhH
Confidence 9999999994 4432 2 444443 34 58899999998765554444
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=97.89 E-value=4.3e-05 Score=87.30 Aligned_cols=150 Identities=15% Similarity=0.067 Sum_probs=84.8
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhcCccccc-ccccccHHHHHH-HhcCCc---hhhh-hccc
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPC-DRASISVRDCIF-ARVGAG---DCQL-RGVS 717 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~g~~vp~-~~~~~~~~d~i~-~~~~~~---d~~~-~~~s 717 (888)
.+.+++ +.+.+|+.++|+||||+|||||+++++...-. ..|.+.-. +.. -. +..+. ..++.. ..+. ...+
T Consensus 147 ~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~-~~gvI~~~Gerg-~e-v~e~~~~~l~~~~l~r~v~vv~~~ 222 (438)
T PRK07721 147 RAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSA-DLNVIALIGERG-RE-VREFIERDLGPEGLKRSIVVVATS 222 (438)
T ss_pred hhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCC-CeEEEEEEecCC-cc-HHHHHHhhcChhhhcCeEEEEECC
Confidence 456777 88899999999999999999999998764321 22211110 000 00 11111 111110 0000 0001
Q ss_pred hhHHHHHH--------HHHHHHhCCCCcEEEEe-----------------CC--CCCCChhhHHHHHHHHHHHHHh-cCC
Q 002722 718 TFMQEMLE--------TASILKGATDRSLIIID-----------------EL--GRGTSTYDGFGLAWAICEHLVE-EIR 769 (888)
Q Consensus 718 ~f~~e~~~--------~~~il~~~~~~slvllD-----------------Ep--~~gtd~~~~~~i~~~il~~l~~-~~~ 769 (888)
.-+..++. +|.-.+....+=|+++| || ++|+||.....+ ..+++.+.. ..|
T Consensus 223 ~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l-~~ller~~~~~~G 301 (438)
T PRK07721 223 DQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAIL-PKLLERTGTNASG 301 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHH-HHHHHHhcCCCCC
Confidence 11111111 12222223566677888 64 579999766666 778888763 247
Q ss_pred C-----eEEEEecChhHHHHhhhccccccccccccEeEEEEEEE
Q 002722 770 A-----PTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAH 808 (888)
Q Consensus 770 ~-----~~l~~TH~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~ 808 (888)
. ++++.+|+++ ..++++ ...+.++|+...
T Consensus 302 sIT~~~TVlv~~hdm~-e~i~d~---------v~~i~dG~Ivls 335 (438)
T PRK07721 302 SITAFYTVLVDGDDMN-EPIADT---------VRGILDGHFVLD 335 (438)
T ss_pred CeeeEEEEEEECCCCC-chhhhh---------EEEecCEEEEEe
Confidence 5 8999999987 366776 666777777654
|
|
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=97.81 E-value=3.3e-05 Score=85.09 Aligned_cols=121 Identities=17% Similarity=0.086 Sum_probs=61.6
Q ss_pred cccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhcCcccccccccccHHHHHHHhcCCc-hhhhhccchhHHHHHHH-H
Q 002722 650 KLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAG-DCQLRGVSTFMQEMLET-A 727 (888)
Q Consensus 650 ~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~g~~vp~~~~~~~~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~-~ 727 (888)
.+.+..+..++|+||+||||||+++.++...- ...+..+-.+..++.+-.. ..++.. .....+.+.+ .+.+. .
T Consensus 138 ~~~v~~~~~ili~G~tGsGKTTll~al~~~~~-~~~~iv~ied~~El~~~~~--~~~~l~~~~~~~~~~~~--~~~~~l~ 212 (308)
T TIGR02788 138 RLAIASRKNIIISGGTGSGKTTFLKSLVDEIP-KDERIITIEDTREIFLPHP--NYVHLFYSKGGQGLAKV--TPKDLLQ 212 (308)
T ss_pred HHHhhCCCEEEEECCCCCCHHHHHHHHHccCC-ccccEEEEcCccccCCCCC--CEEEEEecCCCCCcCcc--CHHHHHH
Confidence 34456788999999999999999998765321 1111100001011110000 000000 0000111111 12222 2
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCC-eEEEEecChhHHHHhhh
Q 002722 728 SILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRA-PTLFATHFHELTALAHE 787 (888)
Q Consensus 728 ~il~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~-~~l~~TH~~~l~~~~~~ 787 (888)
.++ ...|+.+++|||.. ..+ +++++.+.. |. .++.++|........++
T Consensus 213 ~~L--r~~pd~ii~gE~r~-------~e~-~~~l~a~~~--g~~~~i~T~Ha~~~~~~~~R 261 (308)
T TIGR02788 213 SCL--RMRPDRIILGELRG-------DEA-FDFIRAVNT--GHPGSITTLHAGSPEEAFEQ 261 (308)
T ss_pred HHh--cCCCCeEEEeccCC-------HHH-HHHHHHHhc--CCCeEEEEEeCCCHHHHHHH
Confidence 223 36899999999974 222 455666654 54 45899999776655544
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=97.69 E-value=2.2e-05 Score=71.39 Aligned_cols=34 Identities=15% Similarity=-0.077 Sum_probs=29.8
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHhhhh
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVG 677 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~ 677 (888)
.+.++++|++.+|++++|+||+|||||||++++.
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 3456788888999999999999999999999964
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00023 Score=84.43 Aligned_cols=111 Identities=16% Similarity=0.155 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhC----CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhhccccccccc
Q 002722 721 QEMLETASILKGA----TDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQ 796 (888)
Q Consensus 721 ~e~~~~~~il~~~----~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~~~~~~~~~~ 796 (888)
|++++++.++..+ .+++++|+|||++|+|+..+..+ ..++..+.+ ++++|++||++.++.++++
T Consensus 434 Ge~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v-~~~l~~l~~--~~qvi~iTH~~~~~~~ad~--------- 501 (553)
T PRK10869 434 GELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVV-GKLLRQLGE--STQVMCVTHLPQVAGCGHQ--------- 501 (553)
T ss_pred HHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHH-HHHHHHHhc--CCEEEEEecCHHHHHhCCE---------
Confidence 3444454444443 36899999999999999888888 556666754 6889999999998887776
Q ss_pred cccEeEEEEEEEEEcCCCcEEEeEEecCCCCCCcHHHHHHHHCC---CCHHHHHHHHHHH
Q 002722 797 MVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFAN---FPESVVTLAREKA 853 (888)
Q Consensus 797 ~~~v~~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~gi~vA~~ag---lp~~vi~~A~~~~ 853 (888)
+..|.. ... ++.+.+-.-.| .+.-==-++|||.| +.+.-+..|++++
T Consensus 502 ~~~v~k-----~~~-~~~t~s~i~~L----~~~~R~~EiARMl~G~~~t~~~~~~A~eLl 551 (553)
T PRK10869 502 HFFVSK-----ETD-GGMTETHMQPL----DKKARLQELARLLGGSEVTRNTLANAKELL 551 (553)
T ss_pred EEEEec-----ccc-CCeeeEEEEEC----ChhHHHHHHHHHhCCCCCCHHHHHHHHHHh
Confidence 222211 111 01122222222 23344569999994 4677788888775
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=97.68 E-value=4.3e-05 Score=62.09 Aligned_cols=33 Identities=27% Similarity=0.402 Sum_probs=25.4
Q ss_pred CccccCCCCeEEEEEecCCCChhHHHhhhhHHHh
Q 002722 648 DCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL 681 (888)
Q Consensus 648 ~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~ 681 (888)
.+.|+ ..|.+++|+|||||||||+|..+..+.+
T Consensus 16 ~~~~~-~~g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 16 TIDFD-PRGDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred EEeec-CCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 44553 2356899999999999999999866543
|
|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00029 Score=84.18 Aligned_cols=97 Identities=20% Similarity=0.161 Sum_probs=65.3
Q ss_pred CCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhhccccccccccccEeEEEEEEEEEcCCC
Q 002722 735 DRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSR 814 (888)
Q Consensus 735 ~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 814 (888)
+++++|+|||++|+|+.....+ ..++..+.+ +.+||++||++.++..+++ +..+.... . ++.
T Consensus 462 ~~~~lilDEp~~gld~~~~~~~-~~~l~~l~~--~~~vi~iTH~~~~~~~ad~---------~~~l~k~~-----~-~~~ 523 (563)
T TIGR00634 462 AVTTLIFDEVDVGVSGETAQAI-AKKLAQLSE--RHQVLCVTHLPQVAAHADA---------HFKVEKEG-----L-DGR 523 (563)
T ss_pred CCCEEEEECCCCCCCHHHHHHH-HHHHHHHhc--CCEEEEEEChHHHHHhcCe---------EEEEEEcc-----C-CCc
Confidence 4699999999999999988888 556666654 7899999999998887766 22222211 1 022
Q ss_pred cEEEeEEecCCCCCCcHHHHHHHHCC---CCHHHHHHHHHHH
Q 002722 815 KLTMLYKVEPGACDQSFGIHVAEFAN---FPESVVTLAREKA 853 (888)
Q Consensus 815 ~~~~~y~l~~G~~~~s~gi~vA~~ag---lp~~vi~~A~~~~ 853 (888)
+.+-...| .+.-==-++|||.| +-+.-+..|++++
T Consensus 524 t~s~i~~L----~~~~r~~EiArml~G~~~t~~~~~~A~~ll 561 (563)
T TIGR00634 524 TATRVRPL----SGEERVAELARMLAGLEKSDLTLAHAQELL 561 (563)
T ss_pred EEEEEEEC----CccHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 23332333 22334458999994 4567788888764
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00017 Score=81.00 Aligned_cols=151 Identities=14% Similarity=0.077 Sum_probs=101.3
Q ss_pred cCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhh----------------------hcCccccccccc------cc
Q 002722 646 PNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA----------------------QVGSFVPCDRAS------IS 697 (888)
Q Consensus 646 ~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a----------------------~~g~~vp~~~~~------~~ 697 (888)
..+++|++..|++++|.|--|-|-+.|+..++++...+ ..-.|||.+... ++
T Consensus 274 v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~s 353 (501)
T COG3845 274 VKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLS 353 (501)
T ss_pred eeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCcc
Confidence 45799999999999999999999999999998764211 112466755422 22
Q ss_pred HHHH----------------------------HHHhcCCc-hhhhhccchhHHHHHHHHHH-HHhCCCCcEEEEeCCCCC
Q 002722 698 VRDC----------------------------IFARVGAG-DCQLRGVSTFMQEMLETASI-LKGATDRSLIIIDELGRG 747 (888)
Q Consensus 698 ~~d~----------------------------i~~~~~~~-d~~~~~~s~f~~e~~~~~~i-l~~~~~~slvllDEp~~g 747 (888)
+.+. +..++... .+......++|++-+|...+ .....+|+|+|..+||+|
T Consensus 354 l~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrG 433 (501)
T COG3845 354 LAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRG 433 (501)
T ss_pred HHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCcc
Confidence 2222 22222222 12222344666665554443 345789999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEecCh-hHHHHhhhccccccccccccEeEEEEEE
Q 002722 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFH-ELTALAHENANEFNTKQMVGVANYHVSA 807 (888)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~-~l~~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (888)
+|......|...+++ .++ .|+.+|++|-++ |+..++|+ ...+.++.+.-
T Consensus 434 LDvgA~~~I~~~l~e-~r~-~G~AVLLiS~dLDEil~lsDr---------IaVi~~Gri~~ 483 (501)
T COG3845 434 LDVGAIEFIHERLLE-LRD-AGKAVLLISEDLDEILELSDR---------IAVIYEGRIVG 483 (501)
T ss_pred ccHHHHHHHHHHHHH-HHh-cCCEEEEEehhHHHHHHhhhe---------eeeeeCCceec
Confidence 999888888555555 444 599999988884 66789998 66566655543
|
|
| >KOG0219 consensus Mismatch repair ATPase MSH2 (MutS family) [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.63 E-value=5.7e-06 Score=96.19 Aligned_cols=215 Identities=7% Similarity=-0.126 Sum_probs=157.7
Q ss_pred EcCcCceeeeccCcccccCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhcCccccccc-ccccHHHHHHHhcC
Q 002722 629 EGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDR-ASISVRDCIFARVG 707 (888)
Q Consensus 629 ~~~rhp~~~~~~~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~g~~vp~~~-~~~~~~d~i~~~~~ 707 (888)
.+.+||++.....-.+.++++.+--+++.---.||++++|++|||++||-.+.+++.++.+|+.- ++.+.-|..+ +-+
T Consensus 627 ~Qd~~~fIpNdv~le~~~~~~~IiTGpNMGGKSTyir~~Gvi~lmAQIGcfVPce~A~i~IvD~Il~RVGA~D~q~-kG~ 705 (902)
T KOG0219|consen 627 GQDEIPFIPNDVVLEKGKCRMLIITGPNMGGKSTYIRQVGVIVLMAQIGCFVPCESATISIVDGILTRVGAGDSQL-KGI 705 (902)
T ss_pred ccccCCCCCCccccccCCceEEEEeCCCcCccchhhhhhhHHHHHHHhCCceehhhcCCchhhHHHhhhccchhhh-cch
Confidence 34699999865544577888887666666777999999999999999999999999999988654 3444444333 334
Q ss_pred CchhhhhccchhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 708 AGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 708 ~~d~~~~~~s~f~~e~~~~~~il~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
.........++++.++.....++....-.+....+|-+++....++..+.+.....+.....+-+...+|++..+.....
T Consensus 706 STFM~Emleta~Ilr~at~~SliiiDELGRGTSt~DGfgiAwai~ehi~~ki~cf~lfATHfhElt~lae~~~~vKn~h~ 785 (902)
T KOG0219|consen 706 STFMAEMLETASILRRATKNSLIIIDELGRGTSTYDGFGIAWAIAEHIATKIGCFCLFATHFHELTKLAEQLPTVKNLHV 785 (902)
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEeccCCCceeccCccHHHHHHHHHHHHHhHhHHHHhHHHHHHhhhhhhhhhhhhee
Confidence 44555566677777777777777666777899999999999999998888886666654346667788999887765443
Q ss_pred ccccccccccccEeEEEEEEEEEcCCCcEEEeEEecCCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCC
Q 002722 788 NANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFTP 861 (888)
Q Consensus 788 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~gi~vA~~aglp~~vi~~A~~~~~~le~~~~ 861 (888)
...+.+-.+ .-+--.|.-+.|.+..+++.++|...-.|.+..+++.+-+++++...+
T Consensus 786 ---------~a~i~~~~~--------~llY~V~~Gv~d~SFGi~VA~~a~fp~~vie~A~~~~~ele~~~~~~e 842 (902)
T KOG0219|consen 786 ---------TAQIENDDI--------TLLYKVFEGVCDQSFGIHVAELVGFPEHVIEMAKQKAEELEDELVIKE 842 (902)
T ss_pred ---------eeEecCcch--------hhHHHHhcccccCcchhhHHHHcCCChHHHHHHHHHHHHHHHHHhhhh
Confidence 233333111 112223456778888899999999999999999999888888776543
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00027 Score=67.69 Aligned_cols=109 Identities=16% Similarity=0.105 Sum_probs=57.1
Q ss_pred CCeEEEEEecCCCChhHHHhhhhHHHhhhhc-CcccccccccccHHHHHHHhcCCchhhhhccchhHHHHHHHHHHHHhC
Q 002722 655 KSWFQIITGPNMGGKSTFIRQVGVNILMAQV-GSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGA 733 (888)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~~~~~a~~-g~~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~ 733 (888)
.+..++|+||.|+||||+++.++....-.+. -.++++....-. .......+.. ...........
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~-------------~~~~~~~~~~~ 82 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEG--LVVAELFGHF-------------LVRLLFELAEK 82 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhh--hHHHHHhhhh-------------hHhHHHHhhcc
Confidence 4678999999999999999998765431100 001111100000 0000000000 11222233335
Q ss_pred CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHh----cCCCeEEEEecChh
Q 002722 734 TDRSLIIIDELGRGTSTYDGFGLAWAICEHLVE----EIRAPTLFATHFHE 780 (888)
Q Consensus 734 ~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~----~~~~~~l~~TH~~~ 780 (888)
..+.++++||.... ++.....+ ..+++.+.. ..++.+|++|+...
T Consensus 83 ~~~~~lilDe~~~~-~~~~~~~~-~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 83 AKPGVLFIDEIDSL-SRGAQNAL-LRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred CCCeEEEEeChhhh-hHHHHHHH-HHHHHhcCceeccCCCeEEEEecCccc
Confidence 67899999998776 33333344 334444432 14788899988754
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0002 Score=80.05 Aligned_cols=92 Identities=14% Similarity=0.185 Sum_probs=55.8
Q ss_pred ccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhh---cCcccccccccccHHHHHH---HhcCCchhhhhccchhHHH
Q 002722 649 CKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ---VGSFVPCDRASISVRDCIF---ARVGAGDCQLRGVSTFMQE 722 (888)
Q Consensus 649 ~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~---~g~~vp~~~~~~~~~d~i~---~~~~~~d~~~~~~s~f~~e 722 (888)
.++....|.+++++||||+||||++..++......+ --.++..+..+++..+.+- ..+|..-........
T Consensus 130 ~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~---- 205 (374)
T PRK14722 130 EDALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGD---- 205 (374)
T ss_pred CCccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCccc----
Confidence 333346788999999999999999999987543321 1235566665555555432 233432111111112
Q ss_pred HHHHHHHHHhCCCCcEEEEeCCCCC
Q 002722 723 MLETASILKGATDRSLIIIDELGRG 747 (888)
Q Consensus 723 ~~~~~~il~~~~~~slvllDEp~~g 747 (888)
+...+....+.++||+|+||+.
T Consensus 206 ---l~~~l~~l~~~DlVLIDTaG~~ 227 (374)
T PRK14722 206 ---LQLALAELRNKHMVLIDTIGMS 227 (374)
T ss_pred ---HHHHHHHhcCCCEEEEcCCCCC
Confidence 1234444567899999999765
|
|
| >PRK09183 transposase/IS protein; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0003 Score=75.48 Aligned_cols=106 Identities=17% Similarity=0.280 Sum_probs=60.5
Q ss_pred CccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhcCc---ccccccccccHHHHHHHhcCCchhhhhccchhHHHHH
Q 002722 648 DCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGS---FVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEML 724 (888)
Q Consensus 648 ~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~g~---~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~ 724 (888)
+++| +..|+.++|+||+|+|||+|...+|..... .|. |+++ ..++..+.... ..+ .
T Consensus 95 ~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~a~~--~G~~v~~~~~--------~~l~~~l~~a~--~~~--~------ 153 (259)
T PRK09183 95 SLSF-IERNENIVLLGPSGVGKTHLAIALGYEAVR--AGIKVRFTTA--------ADLLLQLSTAQ--RQG--R------ 153 (259)
T ss_pred cCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeH--------HHHHHHHHHHH--HCC--c------
Confidence 4455 467888999999999999999999765432 231 2221 11222211100 000 1
Q ss_pred HHHHHHHh-CCCCcEEEEeCCCCC-CChhhHHHHHHHHHHHHHhcCCCeEEEEecC
Q 002722 725 ETASILKG-ATDRSLIIIDELGRG-TSTYDGFGLAWAICEHLVEEIRAPTLFATHF 778 (888)
Q Consensus 725 ~~~~il~~-~~~~slvllDEp~~g-td~~~~~~i~~~il~~l~~~~~~~~l~~TH~ 778 (888)
...++.. ...++++++||.+.. .+. +...+...++....+ .+ .+|++|+.
T Consensus 154 -~~~~~~~~~~~~dlLiiDdlg~~~~~~-~~~~~lf~li~~r~~-~~-s~iiTsn~ 205 (259)
T PRK09183 154 -YKTTLQRGVMAPRLLIIDEIGYLPFSQ-EEANLFFQVIAKRYE-KG-SMILTSNL 205 (259)
T ss_pred -HHHHHHHHhcCCCEEEEcccccCCCCh-HHHHHHHHHHHHHHh-cC-cEEEecCC
Confidence 1122222 457789999999864 444 444344666666554 34 57777776
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=97.55 E-value=5.3e-05 Score=77.16 Aligned_cols=31 Identities=23% Similarity=0.170 Sum_probs=25.9
Q ss_pred cccCCCCeEEEEEecCCCChhHHHhhhhHHH
Q 002722 650 KLIRGKSWFQIITGPNMGGKSTFIRQVGVNI 680 (888)
Q Consensus 650 ~l~~~~~~~~~itGpNg~GKSTllr~i~~~~ 680 (888)
.+....|..++|+|||||||||+++.++...
T Consensus 19 ~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 19 WLAVEARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred HHHHhCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3445678899999999999999999987643
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00046 Score=73.27 Aligned_cols=45 Identities=13% Similarity=0.090 Sum_probs=32.8
Q ss_pred CCCCcEEEEeCCCC------CCChhhHHHHHHHHHHHHHhcCCCeEEEEecCh
Q 002722 733 ATDRSLIIIDELGR------GTSTYDGFGLAWAICEHLVEEIRAPTLFATHFH 779 (888)
Q Consensus 733 ~~~~slvllDEp~~------gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~ 779 (888)
..++.+||+| |.+ ..|+.....+ ...+..+++..|+++|+++|..
T Consensus 109 ~~~~~lvviD-pl~~~~~~~~~d~~~~~~~-~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 109 IRRIDLVVID-PLVSFHGVSENDNGAMDAV-IKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred hcCCCEEEEC-ChHHhCCCCcCCHHHHHHH-HHHHHHHHHHhCCEEEEEeccC
Confidence 4689999999 654 3577666666 3445556554699999999985
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00013 Score=82.77 Aligned_cols=132 Identities=15% Similarity=0.055 Sum_probs=73.2
Q ss_pred cccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhcCc--cccccccccc-HHHHHHHhcCCchh-hhhccchhHHHHHH
Q 002722 650 KLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGS--FVPCDRASIS-VRDCIFARVGAGDC-QLRGVSTFMQEMLE 725 (888)
Q Consensus 650 ~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~g~--~vp~~~~~~~-~~d~i~~~~~~~d~-~~~~~s~f~~e~~~ 725 (888)
.+.+..|+.++|.||||+||||++++++..... ..|. ++.....+.. ++...+..-|.... +....+.-+..++.
T Consensus 150 ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~-~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ 228 (432)
T PRK06793 150 MLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKA-DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQL 228 (432)
T ss_pred cceecCCcEEEEECCCCCChHHHHHHHhccCCC-CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHH
Confidence 477789999999999999999999998875421 1221 1222211111 11212222121111 11223333344443
Q ss_pred HHHHHH--------hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhh
Q 002722 726 TASILK--------GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAH 786 (888)
Q Consensus 726 ~~~il~--------~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~ 786 (888)
.+.... ....+-|+++|+||++.++. ..+ ...+...-. .|-+..+.||...+.+-+.
T Consensus 229 ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--rei-sl~~~e~p~-~G~~~~~~s~l~~L~ERag 293 (432)
T PRK06793 229 RAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSV-DIAVKELPI-GGKTLLMESYMKKLLERSG 293 (432)
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHH-HHHhcCCCC-CCeeeeeeccchhHHHHhc
Confidence 332222 23678999999999999996 334 223333433 3677777788655555443
|
|
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00024 Score=77.87 Aligned_cols=65 Identities=11% Similarity=0.055 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 721 QEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 721 ~e~~~~~~il~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
+|+++.+.++......++.++|||.+-+|...+...|.. ++.+.. ....+|++-||+.+..+...
T Consensus 217 gelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~-IRsl~~-p~~YiIVVEHDLsVLDylSD 281 (592)
T KOG0063|consen 217 GELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAIT-IRSLIN-PDRYIIVVEHDLSVLDYLSD 281 (592)
T ss_pred chhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHH-HHHhhC-CCCeEEEEEeechHHHhhhc
Confidence 556666666666788899999999999999988887554 455555 58899999999998876544
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00019 Score=82.60 Aligned_cols=87 Identities=15% Similarity=0.239 Sum_probs=53.5
Q ss_pred CCCeEEEEEecCCCChhHHHhhhhHHHhhhhc---CcccccccccccHHHHHH---HhcCCchhhhhccchhHHHHHHHH
Q 002722 654 GKSWFQIITGPNMGGKSTFIRQVGVNILMAQV---GSFVPCDRASISVRDCIF---ARVGAGDCQLRGVSTFMQEMLETA 727 (888)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~---g~~vp~~~~~~~~~d~i~---~~~~~~d~~~~~~s~f~~e~~~~~ 727 (888)
..|.+++++||||+||||++..++......+. -.+++++..+++..+.+- ..+|..-...... . +..
T Consensus 254 ~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~----~---Dl~ 326 (484)
T PRK06995 254 DRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDA----A---DLR 326 (484)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCc----h---hHH
Confidence 45789999999999999999999976544321 236777776666665432 2333211111111 1 112
Q ss_pred HHHHhCCCCcEEEEeCCCCC
Q 002722 728 SILKGATDRSLIIIDELGRG 747 (888)
Q Consensus 728 ~il~~~~~~slvllDEp~~g 747 (888)
..+....+..++++|.+|++
T Consensus 327 ~aL~~L~d~d~VLIDTaGr~ 346 (484)
T PRK06995 327 LALSELRNKHIVLIDTIGMS 346 (484)
T ss_pred HHHHhccCCCeEEeCCCCcC
Confidence 23334566789999998665
|
|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0005 Score=78.02 Aligned_cols=92 Identities=15% Similarity=0.269 Sum_probs=56.6
Q ss_pred CCCeEEEEEecCCCChhHHHhhhhHHHhhh---hcCcccccccccccHHHHHH---HhcCCchhhhhccchhHHHHHHHH
Q 002722 654 GKSWFQIITGPNMGGKSTFIRQVGVNILMA---QVGSFVPCDRASISVRDCIF---ARVGAGDCQLRGVSTFMQEMLETA 727 (888)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~~~~~a---~~g~~vp~~~~~~~~~d~i~---~~~~~~d~~~~~~s~f~~e~~~~~ 727 (888)
..|++++++||||+||||+++.++...++. .-+.++.++..+++.++.+. ..+|..-...... . +..
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~----~---dl~ 261 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDI----A---DLQ 261 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCH----H---HHH
Confidence 467899999999999999999998754332 23345666666777665432 2334321111111 1 123
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChhhHH
Q 002722 728 SILKGATDRSLIIIDELGRGTSTYDGF 754 (888)
Q Consensus 728 ~il~~~~~~slvllDEp~~gtd~~~~~ 754 (888)
..+....+..++++|.+ |..+.+..
T Consensus 262 ~al~~l~~~d~VLIDTa--Grsqrd~~ 286 (420)
T PRK14721 262 LMLHELRGKHMVLIDTV--GMSQRDQM 286 (420)
T ss_pred HHHHHhcCCCEEEecCC--CCCcchHH
Confidence 34445678899999986 55555443
|
|
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00036 Score=84.03 Aligned_cols=96 Identities=16% Similarity=0.209 Sum_probs=61.0
Q ss_pred cCCccccCCCCeEEEEEecCCCChhHHHhhhhHHHhhhhc---CcccccccccccHHHHHH---HhcCCchhhhhccchh
Q 002722 646 PNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQV---GSFVPCDRASISVRDCIF---ARVGAGDCQLRGVSTF 719 (888)
Q Consensus 646 ~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~---g~~vp~~~~~~~~~d~i~---~~~~~~d~~~~~~s~f 719 (888)
.++.++....|++++++||||+||||.+..++......+. -.++.++..+++..+.+- ..+|..-....
T Consensus 175 l~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~----- 249 (767)
T PRK14723 175 LRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVK----- 249 (767)
T ss_pred ccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccC-----
Confidence 3445554556889999999999999999999875533321 135677777776666543 23343211111
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEeCCCCCC
Q 002722 720 MQEMLETASILKGATDRSLIIIDELGRGT 748 (888)
Q Consensus 720 ~~e~~~~~~il~~~~~~slvllDEp~~gt 748 (888)
.-..+..++..+.+.++||+|=+|+.-
T Consensus 250 --~~~~l~~al~~~~~~D~VLIDTAGRs~ 276 (767)
T PRK14723 250 --DAADLRFALAALGDKHLVLIDTVGMSQ 276 (767)
T ss_pred --CHHHHHHHHHHhcCCCEEEEeCCCCCc
Confidence 122344455566677999999888653
|
|
| >COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00064 Score=69.02 Aligned_cols=114 Identities=22% Similarity=0.320 Sum_probs=66.4
Q ss_pred CCeE-EEEEecCCCChhHHHhhhhHHHhhhhcCcccccccccccHHH------------HHHHhcCCchhhhhccchhHH
Q 002722 655 KSWF-QIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRD------------CIFARVGAGDCQLRGVSTFMQ 721 (888)
Q Consensus 655 ~~~~-~~itGpNg~GKSTllr~i~~~~~~a~~g~~vp~~~~~~~~~d------------~i~~~~~~~d~~~~~~s~f~~ 721 (888)
.|.. ++|+||.++||||+||-++.+.--... .|.|-...-+.--. .+-.|+...|.--+ +.
T Consensus 135 ~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~-~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk--~~--- 208 (308)
T COG3854 135 NGWLNTLIIGPPQVGKTTLLRDIARLLSDGIN-QFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPK--AE--- 208 (308)
T ss_pred cCceeeEEecCCCCChHHHHHHHHHHhhcccc-ccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchH--HH---
Confidence 4555 899999999999999999876543322 23332211111000 11222222222111 11
Q ss_pred HHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 722 EMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 722 e~~~~~~il~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
+| -.+++ ...|.++++||.|+-.|. .|+++.+. .|..++.+-|=.++.++..+
T Consensus 209 gm---mmaIr-sm~PEViIvDEIGt~~d~-------~A~~ta~~--~GVkli~TaHG~~iedl~kr 261 (308)
T COG3854 209 GM---MMAIR-SMSPEVIIVDEIGTEEDA-------LAILTALH--AGVKLITTAHGNGIEDLIKR 261 (308)
T ss_pred HH---HHHHH-hcCCcEEEEeccccHHHH-------HHHHHHHh--cCcEEEEeeccccHHHhhcC
Confidence 11 11222 457899999999988776 44556555 48999999998777766554
|
|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00059 Score=64.63 Aligned_cols=104 Identities=17% Similarity=0.160 Sum_probs=54.8
Q ss_pred EEEEecCCCChhHHHhhhhHHHhhhhcCcccccccccccHHHHHHHhcCCchhhhhccchhHHHHHHHHHHHHhCCCCcE
Q 002722 659 QIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSL 738 (888)
Q Consensus 659 ~~itGpNg~GKSTllr~i~~~~~~a~~g~~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~~~~sl 738 (888)
++|+||.|+||||+.+.++... |. |- ..+. ..+............+..+..-......|.+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l-----~~--~~--~~i~----------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v 61 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL-----GF--PF--IEID----------GSELISSYAGDSEQKIRDFFKKAKKSAKPCV 61 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT-----TS--EE--EEEE----------TTHHHTSSTTHHHHHHHHHHHHHHHTSTSEE
T ss_pred CEEECcCCCCeeHHHHHHHhhc-----cc--cc--cccc----------cccccccccccccccccccccccccccccee
Confidence 5799999999999999987642 21 10 0011 1111100111112222222222222224899
Q ss_pred EEEeCCCCCCChh------hHHHHHHHHHHHHHhcC----CCeEEEEecChhH
Q 002722 739 IIIDELGRGTSTY------DGFGLAWAICEHLVEEI----RAPTLFATHFHEL 781 (888)
Q Consensus 739 vllDEp~~gtd~~------~~~~i~~~il~~l~~~~----~~~~l~~TH~~~l 781 (888)
+++||.-.-.... ....+...++..+.... +..+|++|++.+.
T Consensus 62 l~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~ 114 (132)
T PF00004_consen 62 LFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDK 114 (132)
T ss_dssp EEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGG
T ss_pred eeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCChhh
Confidence 9999976544332 33444466666665522 2577888888543
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0012 Score=71.34 Aligned_cols=24 Identities=38% Similarity=0.455 Sum_probs=20.8
Q ss_pred CeEEEEEecCCCChhHHHhhhhHH
Q 002722 656 SWFQIITGPNMGGKSTFIRQVGVN 679 (888)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~~ 679 (888)
+.+++|+||||+||||+++.++..
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~ 66 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKR 66 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHh
Confidence 448999999999999999988653
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0021 Score=67.61 Aligned_cols=126 Identities=14% Similarity=0.144 Sum_probs=64.0
Q ss_pred CCCCeEEEEEecCCCChhHHHhhhhHHHh-hhhcCcccccccccccHHHHHHHhcCC-------------chhhhhc---
Q 002722 653 RGKSWFQIITGPNMGGKSTFIRQVGVNIL-MAQVGSFVPCDRASISVRDCIFARVGA-------------GDCQLRG--- 715 (888)
Q Consensus 653 ~~~~~~~~itGpNg~GKSTllr~i~~~~~-~a~~g~~vp~~~~~~~~~d~i~~~~~~-------------~d~~~~~--- 715 (888)
+..|++++|.||+|+|||||..+++.-.. ...-+.|+..+...-.+.. ...++|. .|.....
T Consensus 17 i~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~~~~i~~-~~~~~g~~~~~~~~~~~l~i~d~~~~~~~~ 95 (229)
T TIGR03881 17 IPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEESRESIIR-QAAQFGMDFEKAIEEGKLVIIDALMKEKED 95 (229)
T ss_pred CcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHH-HHHHhCCCHHHHhhcCCEEEEEcccccccc
Confidence 46789999999999999999998764222 1222334433221111111 1112221 1111000
Q ss_pred ---cchhH-HHH-HHHHHHHHhCC-CCcEEEEeCCCCCC--ChhhHHHHHHHHHHHHHhcCCCeEEEEecChh
Q 002722 716 ---VSTFM-QEM-LETASILKGAT-DRSLIIIDELGRGT--STYDGFGLAWAICEHLVEEIRAPTLFATHFHE 780 (888)
Q Consensus 716 ---~s~f~-~e~-~~~~~il~~~~-~~slvllDEp~~gt--d~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~ 780 (888)
...+. .++ .++..++.... .++++++|-|+.-. +|.....+.+.+...+.+ .|+++|+++|...
T Consensus 96 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~-~~~tvil~~~~~~ 167 (229)
T TIGR03881 96 EWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNR-WNFTILLTSQYAI 167 (229)
T ss_pred ccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHHHh-CCCEEEEEecccc
Confidence 00111 111 12222232222 46788888876532 333333444566666665 7999999999643
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0007 Score=75.80 Aligned_cols=114 Identities=16% Similarity=0.105 Sum_probs=57.2
Q ss_pred CCCeEEEEEecCCCChhHHHhhhhHHHhhhhcCcccccccccccHH-HHHHHhcCCchhhhhccchhHHHHHHHHHHHHh
Q 002722 654 GKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVR-DCIFARVGAGDCQLRGVSTFMQEMLETASILKG 732 (888)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~~~~~a~~g~~vp~~~~~~~~~-d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~ 732 (888)
.++.+++|+||+||||||+|+.+.........+..+-.+.. +... ......+. ...+....-+|... +..+++
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp-~E~~~~~~~~~i~-q~evg~~~~~~~~~---l~~~lr- 193 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDP-IEYVHRNKRSLIN-QREVGLDTLSFANA---LRAALR- 193 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCC-hhhhccCccceEE-ccccCCCCcCHHHH---HHHhhc-
Confidence 34679999999999999999987653221111211111110 0000 00000000 00011111123221 222333
Q ss_pred CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHH
Q 002722 733 ATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTA 783 (888)
Q Consensus 733 ~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~ 783 (888)
.+|+++++||+. |+.... ..++. +. .|..++.++|-.....
T Consensus 194 -~~pd~i~vgEir---d~~~~~----~~l~a-a~-tGh~v~~T~Ha~~~~~ 234 (343)
T TIGR01420 194 -EDPDVILIGEMR---DLETVE----LALTA-AE-TGHLVFGTLHTNSAAQ 234 (343)
T ss_pred -cCCCEEEEeCCC---CHHHHH----HHHHH-HH-cCCcEEEEEcCCCHHH
Confidence 689999999994 654332 23333 33 5899999999754443
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00067 Score=70.67 Aligned_cols=34 Identities=6% Similarity=-0.146 Sum_probs=28.0
Q ss_pred hCCCCcEEEEeCCC-----CCCChhhHHHHHHHHHHHHHh
Q 002722 732 GATDRSLIIIDELG-----RGTSTYDGFGLAWAICEHLVE 766 (888)
Q Consensus 732 ~~~~~slvllDEp~-----~gtd~~~~~~i~~~il~~l~~ 766 (888)
.+.+|+++++|||+ .|+||.....+ ..++..++.
T Consensus 167 l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~-~~~~~~~~~ 205 (215)
T PTZ00132 167 LTNDPNLVFVGAPALAPEEIQIDPELVAQA-EKELQAAAN 205 (215)
T ss_pred HhhcccceecCCcccCCCccccCHHHHHHH-HHHHHHHhh
Confidence 46789999999999 99999888887 666666654
|
|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00089 Score=70.53 Aligned_cols=94 Identities=18% Similarity=0.309 Sum_probs=56.2
Q ss_pred CeEEEEEecCCCChhHHHhhhhHHHhhhh-cCcccccccccccHHHHHHHhcCCchhhhhccchhHHHHHHHHHHHHhCC
Q 002722 656 SWFQIITGPNMGGKSTFIRQVGVNILMAQ-VGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGAT 734 (888)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~~~~~a~-~g~~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~~ 734 (888)
+..+.|.||.|+|||+|++.+|.-..... -..|++.... ..+. ..++....
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~----------------------~~~~------~~~~~~~~ 90 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS----------------------QYFS------PAVLENLE 90 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh----------------------hhhh------HHHHhhcc
Confidence 45789999999999999999987533221 1123332100 0000 01233345
Q ss_pred CCcEEEEeCCCCCC-ChhhHHHHHHHHHHHHHhcCCCeEEEEecCh
Q 002722 735 DRSLIIIDELGRGT-STYDGFGLAWAICEHLVEEIRAPTLFATHFH 779 (888)
Q Consensus 735 ~~slvllDEp~~gt-d~~~~~~i~~~il~~l~~~~~~~~l~~TH~~ 779 (888)
+.+++++||+.... +......+ ..++..+.+ .|.++|++|++.
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l-~~l~n~~~~-~~~~illits~~ 134 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAI-FDLFNRIKE-QGKTLLLISADC 134 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHH-HHHHHHHHH-cCCcEEEEeCCC
Confidence 67899999998865 33323333 667777766 466766666654
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0036 Score=69.69 Aligned_cols=88 Identities=18% Similarity=0.248 Sum_probs=49.9
Q ss_pred CeEEEEEecCCCChhHHHhhhhHHHhhhhcC---cccccccccccHHHHHHH---hcCCchhhhhccchhHHHHHHHHHH
Q 002722 656 SWFQIITGPNMGGKSTFIRQVGVNILMAQVG---SFVPCDRASISVRDCIFA---RVGAGDCQLRGVSTFMQEMLETASI 729 (888)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~~~~~a~~g---~~vp~~~~~~~~~d~i~~---~~~~~d~~~~~~s~f~~e~~~~~~i 729 (888)
+++++|+||||+||||++..+|.... .-| .++.++..+++.++++-+ .+|..-.... + ..++.+....
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~--~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~--d--~~~L~~aL~~ 314 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFH--GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR--D--EAAMTRALTY 314 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH--HcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecC--C--HHHHHHHHHH
Confidence 46899999999999999999986432 222 245566655555555443 2332110000 0 1222222111
Q ss_pred HHhCCCCcEEEEeCCCCCCC
Q 002722 730 LKGATDRSLIIIDELGRGTS 749 (888)
Q Consensus 730 l~~~~~~slvllDEp~~gtd 749 (888)
+....+.++||+|-||+.-.
T Consensus 315 lk~~~~~DvVLIDTaGRs~k 334 (436)
T PRK11889 315 FKEEARVDYILIDTAGKNYR 334 (436)
T ss_pred HHhccCCCEEEEeCccccCc
Confidence 22223579999998888553
|
|
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0042 Score=66.72 Aligned_cols=90 Identities=18% Similarity=0.234 Sum_probs=51.3
Q ss_pred CCeEEEEEecCCCChhHHHhhhhHHHhh-hhcCcccccccccccHHHHHHHh---cCCchhhhhccchhHHHHHHHHHHH
Q 002722 655 KSWFQIITGPNMGGKSTFIRQVGVNILM-AQVGSFVPCDRASISVRDCIFAR---VGAGDCQLRGVSTFMQEMLETASIL 730 (888)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~~~~~-a~~g~~vp~~~~~~~~~d~i~~~---~~~~d~~~~~~s~f~~e~~~~~~il 730 (888)
++..++++||||+||||+++.++..... .....++-++..+++.+.++-.. ++..-...... ..+.+...-+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~----~~l~~~l~~l 149 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDE----AAMTRALTYF 149 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCH----HHHHHHHHHH
Confidence 5689999999999999999998765322 12223455555555555554432 22111000011 1222221122
Q ss_pred HhCCCCcEEEEeCCCCCC
Q 002722 731 KGATDRSLIIIDELGRGT 748 (888)
Q Consensus 731 ~~~~~~slvllDEp~~gt 748 (888)
....+.+++|+|-||+.-
T Consensus 150 ~~~~~~D~ViIDt~Gr~~ 167 (270)
T PRK06731 150 KEEARVDYILIDTAGKNY 167 (270)
T ss_pred HhcCCCCEEEEECCCCCc
Confidence 223467999999999874
|
|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0014 Score=69.94 Aligned_cols=105 Identities=20% Similarity=0.221 Sum_probs=58.6
Q ss_pred CCeEEEEEecCCCChhHHHhhhhHHHhhhhcCcccccccccccHHHHHHHhcCCchhhhhccchhHHHHHHHHHHHHhCC
Q 002722 655 KSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGAT 734 (888)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~~~~~a~~g~~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~~ 734 (888)
.++-++|+||.|+|||++...++.-.. +.|.-| .+.-...++.++.... ...++ ...+....
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~--~~g~~v-----~f~t~~~l~~~l~~~~----~~~~~-------~~~l~~l~ 158 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRAC--QAGHRV-----LFATAAQWVARLAAAH----HAGRL-------QAELVKLG 158 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHH--HCCCch-----hhhhHHHHHHHHHHHH----hcCcH-------HHHHHHhc
Confidence 456689999999999999999876433 223211 1111123333332110 01111 12233345
Q ss_pred CCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecCh
Q 002722 735 DRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFH 779 (888)
Q Consensus 735 ~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~ 779 (888)
+++|||+||++.---......+...++..-.+ ...+|++|+..
T Consensus 159 ~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~--~~s~IitSn~~ 201 (254)
T PRK06526 159 RYPLLIVDEVGYIPFEPEAANLFFQLVSSRYE--RASLIVTSNKP 201 (254)
T ss_pred cCCEEEEcccccCCCCHHHHHHHHHHHHHHHh--cCCEEEEcCCC
Confidence 67999999998653223344444666665444 34578888873
|
|
| >cd01121 Sms Sms (bacterial radA) DNA repair protein | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0021 Score=72.31 Aligned_cols=120 Identities=16% Similarity=0.107 Sum_probs=65.6
Q ss_pred CCCCeEEEEEecCCCChhHHHhhhhHHHhhh-hcCcccccccccccHHHHHHHhcCCc-hhhhhccchhHHHHHHHHHHH
Q 002722 653 RGKSWFQIITGPNMGGKSTFIRQVGVNILMA-QVGSFVPCDRASISVRDCIFARVGAG-DCQLRGVSTFMQEMLETASIL 730 (888)
Q Consensus 653 ~~~~~~~~itGpNg~GKSTllr~i~~~~~~a-~~g~~vp~~~~~~~~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il 730 (888)
+.+|.+++|.||+|+|||||+.+++...... .-..|+..+.. ...+..-..++|.. +++.....+. +.++...+
T Consensus 79 i~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs-~~qi~~Ra~rlg~~~~~l~l~~e~~---le~I~~~i 154 (372)
T cd01121 79 LVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEES-PEQIKLRADRLGISTENLYLLAETN---LEDILASI 154 (372)
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcC-HHHHHHHHHHcCCCcccEEEEccCc---HHHHHHHH
Confidence 4568999999999999999999988643322 12235444322 11122224556642 2221111111 22232233
Q ss_pred HhCCCCcEEEEeCCCC----CCC--h---hhHHHHHHHHHHHHHhcCCCeEEEEecC
Q 002722 731 KGATDRSLIIIDELGR----GTS--T---YDGFGLAWAICEHLVEEIRAPTLFATHF 778 (888)
Q Consensus 731 ~~~~~~slvllDEp~~----gtd--~---~~~~~i~~~il~~l~~~~~~~~l~~TH~ 778 (888)
. ..++++|++|+... ..+ + .....++..+.+...+ .+++++++.|-
T Consensus 155 ~-~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~-~~itvilvghv 209 (372)
T cd01121 155 E-ELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKE-RNIPIFIVGHV 209 (372)
T ss_pred H-hcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHH-cCCeEEEEeec
Confidence 2 35789999999743 221 1 1122333444444444 79999999885
|
This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules. |
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0004 Score=66.91 Aligned_cols=118 Identities=23% Similarity=0.284 Sum_probs=61.3
Q ss_pred eEEEEEecCCCChhHHHhhhhHHHhh--hhcCcccccccc----c--ccHHH------HHHHhcCCchhhhhccchhHHH
Q 002722 657 WFQIITGPNMGGKSTFIRQVGVNILM--AQVGSFVPCDRA----S--ISVRD------CIFARVGAGDCQLRGVSTFMQE 722 (888)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~~~~~--a~~g~~vp~~~~----~--~~~~d------~i~~~~~~~d~~~~~~s~f~~e 722 (888)
.-++||||.|+||||++.-++...-- -..|.|...+-. + +.++| .+|++.+.+.-......-+-..
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~~ 85 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVEG 85 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeHHH
Confidence 35799999999999999888753221 123334332211 1 11111 1333333321111112222334
Q ss_pred HHHH-HHHHHhC-CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecC
Q 002722 723 MLET-ASILKGA-TDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHF 778 (888)
Q Consensus 723 ~~~~-~~il~~~-~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~ 778 (888)
+.++ ..+++.| ...+++|+||.|..=-.. ..+.. .++...+ .+.++|++-|-
T Consensus 86 le~i~~~al~rA~~~aDvIIIDEIGpMElks--~~f~~-~ve~vl~-~~kpliatlHr 139 (179)
T COG1618 86 LEEIAIPALRRALEEADVIIIDEIGPMELKS--KKFRE-AVEEVLK-SGKPLIATLHR 139 (179)
T ss_pred HHHHhHHHHHHHhhcCCEEEEecccchhhcc--HHHHH-HHHHHhc-CCCcEEEEEec
Confidence 4433 3344443 445999999998754332 23423 3444444 47778888885
|
|
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0017 Score=69.97 Aligned_cols=102 Identities=14% Similarity=0.172 Sum_probs=60.1
Q ss_pred CCeEEEEEecCCCChhHHHhhhhHHHhhh--hcCcccccccccccHHHHHHHhcCCchhhhhccchhHHHHHHHHHHHHh
Q 002722 655 KSWFQIITGPNMGGKSTFIRQVGVNILMA--QVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG 732 (888)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~~~~~a--~~g~~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~ 732 (888)
.+..++|+||.|+|||.|+.+++.-+.-. .-..|+++. .++..+.. .| . .....+..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~--------~l~~~l~~---------~~-~---~~~~~~~~ 174 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFV--------EGFGDLKD---------DF-D---LLEAKLNR 174 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHH--------HHHHHHHH---------HH-H---HHHHHHHH
Confidence 35678999999999999999998754321 122344431 12222100 01 0 11223444
Q ss_pred CCCCcEEEEeCCCC---CCC--hhhHHHHHHHHHHHHHhcCCCeEEEEecC
Q 002722 733 ATDRSLIIIDELGR---GTS--TYDGFGLAWAICEHLVEEIRAPTLFATHF 778 (888)
Q Consensus 733 ~~~~slvllDEp~~---gtd--~~~~~~i~~~il~~l~~~~~~~~l~~TH~ 778 (888)
..+.+|||||+.+. |.. +.........++.+... .+.++|++|+.
T Consensus 175 ~~~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~-~~k~tIitsn~ 224 (266)
T PRK06921 175 MKKVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYL-NHKPILISSEL 224 (266)
T ss_pred hcCCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHH-CCCCEEEECCC
Confidence 56789999999955 542 22223333667776655 46788999987
|
|
| >PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0014 Score=74.45 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=22.0
Q ss_pred CCCeEEEEEecCCCChhHHHhhhhHH
Q 002722 654 GKSWFQIITGPNMGGKSTFIRQVGVN 679 (888)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~~ 679 (888)
..++-++|.||+|+||||+.|.++..
T Consensus 177 ~~pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 177 DPPRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 34567899999999999999998763
|
|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0028 Score=73.18 Aligned_cols=90 Identities=18% Similarity=0.200 Sum_probs=52.4
Q ss_pred CCCeEEEEEecCCCChhHHHhhhhHHHhhhh---cCcccccccccccHHHHHHHhcCCchhhhhccchhHHHHHHHHHHH
Q 002722 654 GKSWFQIITGPNMGGKSTFIRQVGVNILMAQ---VGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASIL 730 (888)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~~~~~a~---~g~~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il 730 (888)
..|++++|+||+|+||||++..++......+ -..++..+..+++-.+.+...-... .+.... . .....+..++
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iL-gv~v~~-a--~d~~~L~~aL 423 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQL-GIAVHE-A--DSAESLLDLL 423 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhccc-CceeEe-c--CcHHHHHHHH
Confidence 4578999999999999999998876543322 2235555555555444433221100 000000 0 0112334455
Q ss_pred HhCCCCcEEEEeCCCCC
Q 002722 731 KGATDRSLIIIDELGRG 747 (888)
Q Consensus 731 ~~~~~~slvllDEp~~g 747 (888)
....+.++||+|.||.+
T Consensus 424 ~~l~~~DLVLIDTaG~s 440 (559)
T PRK12727 424 ERLRDYKLVLIDTAGMG 440 (559)
T ss_pred HHhccCCEEEecCCCcc
Confidence 55567899999999876
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0019 Score=74.13 Aligned_cols=87 Identities=20% Similarity=0.218 Sum_probs=50.8
Q ss_pred CCCeEEEEEecCCCChhHHHhhhhHHHh-hh--hcCcccccccccccHHHHHH---HhcCCchhhhhccchhHHHHHHHH
Q 002722 654 GKSWFQIITGPNMGGKSTFIRQVGVNIL-MA--QVGSFVPCDRASISVRDCIF---ARVGAGDCQLRGVSTFMQEMLETA 727 (888)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~~~~-~a--~~g~~vp~~~~~~~~~d~i~---~~~~~~d~~~~~~s~f~~e~~~~~ 727 (888)
..+++++++||+|+||||++-.+|.... .. .-..++.++..+.+..+.+. ..++..-..... ..++.
T Consensus 219 ~~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~-------~~~l~ 291 (424)
T PRK05703 219 KQGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYD-------PKELA 291 (424)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCC-------HHhHH
Confidence 4577999999999999999988876443 21 22235555554444333332 223321111111 12334
Q ss_pred HHHHhCCCCcEEEEeCCCCC
Q 002722 728 SILKGATDRSLIIIDELGRG 747 (888)
Q Consensus 728 ~il~~~~~~slvllDEp~~g 747 (888)
..+....+.++||+|-||+.
T Consensus 292 ~~l~~~~~~DlVlIDt~G~~ 311 (424)
T PRK05703 292 KALEQLRDCDVILIDTAGRS 311 (424)
T ss_pred HHHHHhCCCCEEEEeCCCCC
Confidence 44445567899999999874
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.005 Score=69.53 Aligned_cols=87 Identities=20% Similarity=0.311 Sum_probs=51.6
Q ss_pred CCeEEEEEecCCCChhHHHhhhhHHHhhhh--cC---cccccccccccHHHHHH---HhcCCchhhhhccchhHHHHHHH
Q 002722 655 KSWFQIITGPNMGGKSTFIRQVGVNILMAQ--VG---SFVPCDRASISVRDCIF---ARVGAGDCQLRGVSTFMQEMLET 726 (888)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~~~~~a~--~g---~~vp~~~~~~~~~d~i~---~~~~~~d~~~~~~s~f~~e~~~~ 726 (888)
.+.+++++||||+||||.+.-+|....... -| .++.++..+.+..+.+- ..+|.. +.. ...+ ..+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvp--v~~-~~~~----~~l 245 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIP--VKA-IESF----KDL 245 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcc--eEe-eCcH----HHH
Confidence 356999999999999999998876443321 12 24455555555444422 223331 111 1111 223
Q ss_pred HHHHHhCCCCcEEEEeCCCCCC
Q 002722 727 ASILKGATDRSLIIIDELGRGT 748 (888)
Q Consensus 727 ~~il~~~~~~slvllDEp~~gt 748 (888)
...+....+.++||+|++|+.-
T Consensus 246 ~~~L~~~~~~DlVLIDTaGr~~ 267 (388)
T PRK12723 246 KEEITQSKDFDLVLVDTIGKSP 267 (388)
T ss_pred HHHHHHhCCCCEEEEcCCCCCc
Confidence 3344455778999999999875
|
|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0012 Score=69.86 Aligned_cols=105 Identities=19% Similarity=0.190 Sum_probs=63.4
Q ss_pred eEEEEEecCCCChhHHHhhhhHHHhhhhcCcccccccccccHHHHHHHhcCCchhhhhccchhHHHHHHHHHHHHhCCCC
Q 002722 657 WFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDR 736 (888)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~~~~~a~~g~~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~~~~ 736 (888)
..++|.||.|+|||+|+..++.-... .|.-| ..++ +..++.++...-. ... . ....++......
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~--~g~~v----~~it-~~~l~~~l~~~~~--~~~------~-~~~~~l~~l~~~ 163 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLL--RGKSV----LIIT-VADIMSAMKDTFS--NSE------T-SEEQLLNDLSNV 163 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHh--cCCeE----EEEE-HHHHHHHHHHHHh--hcc------c-cHHHHHHHhccC
Confidence 36899999999999999998874332 23111 1112 1223332211100 000 0 112344445678
Q ss_pred cEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecC
Q 002722 737 SLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHF 778 (888)
Q Consensus 737 slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~ 778 (888)
+||++||+|.--.+.....+...|+.+-.. .+.++|++|-.
T Consensus 164 dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~-~~~~tiitSNl 204 (244)
T PRK07952 164 DLLVIDEIGVQTESRYEKVIINQIVDRRSS-SKRPTGMLTNS 204 (244)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHHHHHh-CCCCEEEeCCC
Confidence 999999999877666666676788877544 46788888876
|
|
| >cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0013 Score=69.37 Aligned_cols=127 Identities=15% Similarity=0.147 Sum_probs=65.2
Q ss_pred CCCCeEEEEEecCCCChhHHHhhhhHHHhhh-------hcCcccccccc-cccHHHHHHHhcCCc-hhhhhcc-----c-
Q 002722 653 RGKSWFQIITGPNMGGKSTFIRQVGVNILMA-------QVGSFVPCDRA-SISVRDCIFARVGAG-DCQLRGV-----S- 717 (888)
Q Consensus 653 ~~~~~~~~itGpNg~GKSTllr~i~~~~~~a-------~~g~~vp~~~~-~~~~~d~i~~~~~~~-d~~~~~~-----s- 717 (888)
+..|+++.|+||+|+||||++.+++...... ....|+-.+.. ...-+..+...++.. +...... .
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 16 IETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecCC
Confidence 4678999999999999999999998654332 12223333321 111122233333321 1111110 0
Q ss_pred --hhHHHHHHHHHHHHhCCCCcEEEEeCCCCCC----Ch----hhHHHHHH---HHHHHHHhcCCCeEEEEecCh
Q 002722 718 --TFMQEMLETASILKGATDRSLIIIDELGRGT----ST----YDGFGLAW---AICEHLVEEIRAPTLFATHFH 779 (888)
Q Consensus 718 --~f~~e~~~~~~il~~~~~~slvllDEp~~gt----d~----~~~~~i~~---~il~~l~~~~~~~~l~~TH~~ 779 (888)
.+..-+.++...+....++.+|++|-+++=. +. .+...... ..++.++++.++++|+++|-.
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~~~ 170 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADEFNVAVVITNQVT 170 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeccEe
Confidence 1111122233333333378999999997521 11 22222222 334444555799999998754
|
This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 . |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00077 Score=87.50 Aligned_cols=28 Identities=25% Similarity=0.109 Sum_probs=24.4
Q ss_pred ccCCCCeEEEEEecCCCChhHHHhhhhH
Q 002722 651 LIRGKSWFQIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 651 l~~~~~~~~~itGpNg~GKSTllr~i~~ 678 (888)
+..+.+++++|+||+|+||||++|.++.
T Consensus 202 l~~~~~~vvgI~G~gGiGKTTLA~~l~~ 229 (1153)
T PLN03210 202 LESEEVRMVGIWGSSGIGKTTIARALFS 229 (1153)
T ss_pred cccCceEEEEEEcCCCCchHHHHHHHHH
Confidence 4456789999999999999999999965
|
syringae 6; Provisional |
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00088 Score=84.95 Aligned_cols=53 Identities=23% Similarity=0.142 Sum_probs=43.1
Q ss_pred CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 733 ATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 733 ~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
+.+|+++|||||++|+|+.....+.. ++..+.. .+.++|++||++++...+++
T Consensus 810 ~~~~~~lilDEp~~~lD~~~~~~l~~-~l~~~~~-~~~~iiiith~~~~~~~~d~ 862 (880)
T PRK03918 810 AGNIPLLILDEPTPFLDEERRRKLVD-IMERYLR-KIPQVIIVSHDEELKDAADY 862 (880)
T ss_pred cCCCCeEEEeCCCcccCHHHHHHHHH-HHHHHHh-cCCEEEEEECCHHHHHhCCe
Confidence 57899999999999999988888854 4455554 46789999999988777665
|
|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00066 Score=81.54 Aligned_cols=69 Identities=16% Similarity=0.146 Sum_probs=50.6
Q ss_pred ccchhHHHHHHHHHHHHh-C----------CCCcEEEEeCCC-CCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHH
Q 002722 715 GVSTFMQEMLETASILKG-A----------TDRSLIIIDELG-RGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT 782 (888)
Q Consensus 715 ~~s~f~~e~~~~~~il~~-~----------~~~slvllDEp~-~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~ 782 (888)
...++|+++++...+... + .+|+++|||||+ +|+|+.....+ ..++..+ . |.++|++||++++.
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~-~~~l~~~-~--~~~iiiish~~~~~ 540 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKAL-LSILDSL-K--DTNVFVISHKDHDP 540 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHH-HHHHHhC-C--CCeEEEEECchhch
Confidence 345677666665444432 1 489999999998 78999888777 4455555 3 78999999998887
Q ss_pred HHhhh
Q 002722 783 ALAHE 787 (888)
Q Consensus 783 ~~~~~ 787 (888)
..+++
T Consensus 541 ~~~d~ 545 (562)
T PHA02562 541 QKFDR 545 (562)
T ss_pred hhhhc
Confidence 77776
|
|
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00022 Score=80.87 Aligned_cols=31 Identities=19% Similarity=0.115 Sum_probs=29.4
Q ss_pred cccCCccccCCCCeEEEEEecCCCChhHHHh
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIR 674 (888)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr 674 (888)
.+..++++++.+|++++|+||+||||||+||
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence 5678999999999999999999999999999
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00029 Score=72.42 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=20.6
Q ss_pred EEEEEecCCCChhHHHhhhhHHH
Q 002722 658 FQIITGPNMGGKSTFIRQVGVNI 680 (888)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~~~ 680 (888)
+++|+||+||||||+.+.+..+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999997754
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00086 Score=86.15 Aligned_cols=71 Identities=18% Similarity=-0.019 Sum_probs=53.8
Q ss_pred hhccchhHHHHHHHHHHHHh-C----------CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhH
Q 002722 713 LRGVSTFMQEMLETASILKG-A----------TDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHEL 781 (888)
Q Consensus 713 ~~~~s~f~~e~~~~~~il~~-~----------~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l 781 (888)
.....++|+++.....+... + .+|+++||||||.|+|+.....+ ..++..+.. .|++|+++||++++
T Consensus 945 ~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~-~~~l~~l~~-~g~~i~iisH~~~~ 1022 (1042)
T TIGR00618 945 VRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRA-IGILDAIRE-GSKMIGIISHVPEF 1022 (1042)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHH-HHHHHHHHh-CCCEEEEEeCcHHH
Confidence 34567888888766444322 2 26899999999999999877777 667777876 68999999999988
Q ss_pred HHHh
Q 002722 782 TALA 785 (888)
Q Consensus 782 ~~~~ 785 (888)
....
T Consensus 1023 ~~~~ 1026 (1042)
T TIGR00618 1023 RERI 1026 (1042)
T ss_pred HHhh
Confidence 7543
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK11823 DNA repair protein RadA; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0026 Score=73.54 Aligned_cols=120 Identities=17% Similarity=0.105 Sum_probs=66.9
Q ss_pred CCCCeEEEEEecCCCChhHHHhhhhHHHhh-hhcCcccccccccccHHHHHHHhcCCc-hhhhhccchhHHHHHHHHHHH
Q 002722 653 RGKSWFQIITGPNMGGKSTFIRQVGVNILM-AQVGSFVPCDRASISVRDCIFARVGAG-DCQLRGVSTFMQEMLETASIL 730 (888)
Q Consensus 653 ~~~~~~~~itGpNg~GKSTllr~i~~~~~~-a~~g~~vp~~~~~~~~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il 730 (888)
+..|.++.|.||.|+|||||+.+++..... ..-..|+..+... ..+.....++|.. +++.-...+ .+.++...+
T Consensus 77 i~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~-~qi~~ra~rlg~~~~~l~~~~e~---~l~~i~~~i 152 (446)
T PRK11823 77 LVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESA-SQIKLRAERLGLPSDNLYLLAET---NLEAILATI 152 (446)
T ss_pred ccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccH-HHHHHHHHHcCCChhcEEEeCCC---CHHHHHHHH
Confidence 356889999999999999999999774432 1223455544322 1122224556642 111110011 122332233
Q ss_pred HhCCCCcEEEEeCCCCCCC------h---hhHHHHHHHHHHHHHhcCCCeEEEEecC
Q 002722 731 KGATDRSLIIIDELGRGTS------T---YDGFGLAWAICEHLVEEIRAPTLFATHF 778 (888)
Q Consensus 731 ~~~~~~slvllDEp~~gtd------~---~~~~~i~~~il~~l~~~~~~~~l~~TH~ 778 (888)
. ..++++|++|++..-.. + .....++..+.+...+ .++++++++|-
T Consensus 153 ~-~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~-~~itvilv~hv 207 (446)
T PRK11823 153 E-EEKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQ-RGIAVFLVGHV 207 (446)
T ss_pred H-hhCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHH-cCCEEEEEeec
Confidence 2 24789999999864322 1 1222333445554444 79999999994
|
|
| >TIGR00416 sms DNA repair protein RadA | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.003 Score=73.12 Aligned_cols=121 Identities=13% Similarity=0.048 Sum_probs=66.1
Q ss_pred CCCCeEEEEEecCCCChhHHHhhhhHHHhhh-hcCcccccccccccHHHHHHHhcCCch-hhhhccchhHHHHHHHHHHH
Q 002722 653 RGKSWFQIITGPNMGGKSTFIRQVGVNILMA-QVGSFVPCDRASISVRDCIFARVGAGD-CQLRGVSTFMQEMLETASIL 730 (888)
Q Consensus 653 ~~~~~~~~itGpNg~GKSTllr~i~~~~~~a-~~g~~vp~~~~~~~~~d~i~~~~~~~d-~~~~~~s~f~~e~~~~~~il 730 (888)
+.+|.+++|.|++|+|||||+.+++...... .-..|+-.+.. ...+..-..++|... ++.--..+ .+.++...+
T Consensus 91 i~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs-~~qi~~ra~rlg~~~~~l~~~~e~---~~~~I~~~i 166 (454)
T TIGR00416 91 IVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEES-LQQIKMRAIRLGLPEPNLYVLSET---NWEQICANI 166 (454)
T ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCC-HHHHHHHHHHcCCChHHeEEcCCC---CHHHHHHHH
Confidence 4678999999999999999999987643221 12235544332 111111234555422 11111111 122333333
Q ss_pred HhCCCCcEEEEeCCCCCCC---------hhhHHHHHHHHHHHHHhcCCCeEEEEecCh
Q 002722 731 KGATDRSLIIIDELGRGTS---------TYDGFGLAWAICEHLVEEIRAPTLFATHFH 779 (888)
Q Consensus 731 ~~~~~~slvllDEp~~gtd---------~~~~~~i~~~il~~l~~~~~~~~l~~TH~~ 779 (888)
. ..+++++++|....=.. ......++..+.+...+ .|+++++++|..
T Consensus 167 ~-~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~-~giTvllt~hvt 222 (454)
T TIGR00416 167 E-EENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKT-RGIAIFIVGHVT 222 (454)
T ss_pred H-hcCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHH-hCCEEEEEeccc
Confidence 3 35789999998764221 11222333344444444 799999999964
|
The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). |
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.004 Score=81.53 Aligned_cols=52 Identities=8% Similarity=-0.028 Sum_probs=42.7
Q ss_pred CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecChhHHHHhhh
Q 002722 733 ATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 733 ~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
+.+++++|||||++|+|+.....+ ..++..+.. ++.+|++||+..+...++.
T Consensus 1094 ~~~~~~~~lDE~~~~ld~~~~~~~-~~~l~~~~~--~~~~i~~t~~~~~~~~~d~ 1145 (1164)
T TIGR02169 1094 YKPSPFYAFDEVDMFLDGVNVERV-AKLIREKAG--EAQFIVVSLRSPMIEYADR 1145 (1164)
T ss_pred cCCCCcEEecccccccCHHHHHHH-HHHHHHhcC--CCeEEEEECcHHHHHhcce
Confidence 367899999999999999988887 556666654 5779999999887777776
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0024 Score=69.07 Aligned_cols=33 Identities=24% Similarity=0.272 Sum_probs=26.7
Q ss_pred CccccCCCCeEEEEEecCCCChhHHHhhhhHHH
Q 002722 648 DCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI 680 (888)
Q Consensus 648 ~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~ 680 (888)
.+.-....|++++|.||.|+|||||+.+++.-.
T Consensus 22 ~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~ 54 (271)
T cd01122 22 KLTKGLRKGELIILTAGTGVGKTTFLREYALDL 54 (271)
T ss_pred eeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 333345778999999999999999999987644
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0019 Score=84.90 Aligned_cols=71 Identities=17% Similarity=0.035 Sum_probs=52.1
Q ss_pred ccchhHHHHHH-------HHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHh---cCCCeEEEEecChhHHH-
Q 002722 715 GVSTFMQEMLE-------TASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVE---EIRAPTLFATHFHELTA- 783 (888)
Q Consensus 715 ~~s~f~~e~~~-------~~~il~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~---~~~~~~l~~TH~~~l~~- 783 (888)
..+.+++++++ ++.+...+.+|.+++|||||+|+|+.....+...+...+.. ..|.++|++||++++..
T Consensus 1196 ~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~ 1275 (1311)
T TIGR00606 1196 MRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVEL 1275 (1311)
T ss_pred CCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHH
Confidence 33578888876 33344446899999999999999999988886555544321 13789999999988765
Q ss_pred Hh
Q 002722 784 LA 785 (888)
Q Consensus 784 ~~ 785 (888)
++
T Consensus 1276 ~~ 1277 (1311)
T TIGR00606 1276 LG 1277 (1311)
T ss_pred Hh
Confidence 44
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.004 Score=65.31 Aligned_cols=126 Identities=13% Similarity=0.134 Sum_probs=64.4
Q ss_pred CCCCeEEEEEecCCCChhHHHhhhhHHHhhhh-------cCcccccccc-cccHHHHHHHhcCCch-hhhhcc-----ch
Q 002722 653 RGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ-------VGSFVPCDRA-SISVRDCIFARVGAGD-CQLRGV-----ST 718 (888)
Q Consensus 653 ~~~~~~~~itGpNg~GKSTllr~i~~~~~~a~-------~g~~vp~~~~-~~~~~d~i~~~~~~~d-~~~~~~-----s~ 718 (888)
+..|+++.|+||+|+||||++.+++....... ...|+..+.. ....+.++....+... ...... .+
T Consensus 16 ~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~ 95 (226)
T cd01393 16 IPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPYN 95 (226)
T ss_pred CcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCCC
Confidence 46789999999999999999999877654331 2234443321 1112223333332211 111110 11
Q ss_pred hHHHHHHHH-HHHH--hCCCCcEEEEeCCCCCCCh--------hhHHHHHH---HHHHHHHhcCCCeEEEEecCh
Q 002722 719 FMQEMLETA-SILK--GATDRSLIIIDELGRGTST--------YDGFGLAW---AICEHLVEEIRAPTLFATHFH 779 (888)
Q Consensus 719 f~~e~~~~~-~il~--~~~~~slvllDEp~~gtd~--------~~~~~i~~---~il~~l~~~~~~~~l~~TH~~ 779 (888)
..++.... .+.. ...+.++|++|-.+.=... .++..... ..+..++++.++++|+++|-.
T Consensus 96 -~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq~~ 169 (226)
T cd01393 96 -GEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKFNVAVVFTNQVR 169 (226)
T ss_pred -HHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEEEe
Confidence 12222221 1111 1357789999997642111 12222212 234445445799999999864
|
RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB. |
| >PTZ00293 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0016 Score=66.81 Aligned_cols=141 Identities=17% Similarity=0.149 Sum_probs=79.0
Q ss_pred CCeEEEEEecCCCChhH-HHhhhhHHHhhhh-cCcccccccccccHHHHHHHhcCCchhhhhccchhHHHHHHHHHHHHh
Q 002722 655 KSWFQIITGPNMGGKST-FIRQVGVNILMAQ-VGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG 732 (888)
Q Consensus 655 ~~~~~~itGpNg~GKST-llr~i~~~~~~a~-~g~~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~ 732 (888)
.|++.+|+||=+||||| |||.+.......+ ...+-|+...+..-.+.+-+|.|..-.... .. ....+...
T Consensus 3 ~G~i~vi~GpMfSGKTteLLr~i~~y~~ag~kv~~~kp~~DtR~~~~~~I~Sh~g~~~~a~~-v~-------~~~e~~~~ 74 (211)
T PTZ00293 3 RGTISVIIGPMFSGKTTELMRLVKRFTYSEKKCVVIKYSKDTRYSDEQNISSHDKQMLKAIK-VS-------KLKEVLET 74 (211)
T ss_pred ceEEEEEECCCCChHHHHHHHHHHHHHHcCCceEEEEecccccCCCCCcEEecCCCcceeEE-cC-------CHHHHHHh
Confidence 58899999999999999 9998765433221 223345433332101123344443221100 00 11112222
Q ss_pred CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecC-----------hhHHHHhhhccccccccccccEe
Q 002722 733 ATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHF-----------HELTALAHENANEFNTKQMVGVA 801 (888)
Q Consensus 733 ~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~-----------~~l~~~~~~~~~~~~~~~~~~v~ 801 (888)
..+.++|++||.-=-. .+ ..+.+.+.+ .|.+|+++..+ ..|..+|+. +..++
T Consensus 75 ~~~~dvI~IDEaQFf~------~i-~~~~~~l~~-~g~~VivaGLd~Df~~~~F~~~~~Ll~~AD~---------V~kl~ 137 (211)
T PTZ00293 75 AKNYDVIAIDEGQFFP------DL-VEFSEAAAN-LGKIVIVAALDGTFQRKPFGQILNLIPLAER---------VTKLT 137 (211)
T ss_pred ccCCCEEEEEchHhhH------hH-HHHHHHHHH-CCCeEEEEecCcccccCcCccHHHHHHhhCE---------EEEcc
Confidence 2567999999975432 13 556677776 69999999998 556666666 33333
Q ss_pred EEEEEEEEEcCCCcEEEeEEecCC
Q 002722 802 NYHVSAHIDSTSRKLTMLYKVEPG 825 (888)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~y~l~~G 825 (888)
..++.+ +..-+|++|+.+|
T Consensus 138 aiC~~C-----G~~A~~t~R~~~~ 156 (211)
T PTZ00293 138 AVCMFC-----GKEASFSKRIVQS 156 (211)
T ss_pred eEchhh-----CCcceeEEEEcCC
Confidence 333322 3446677776553
|
|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0014 Score=83.05 Aligned_cols=73 Identities=19% Similarity=0.165 Sum_probs=52.2
Q ss_pred ccchhHHHHHHHHHH-------HHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCC-CeEEEEecChhHHHHhh
Q 002722 715 GVSTFMQEMLETASI-------LKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIR-APTLFATHFHELTALAH 786 (888)
Q Consensus 715 ~~s~f~~e~~~~~~i-------l~~~~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~-~~~l~~TH~~~l~~~~~ 786 (888)
+...+|+++++...+ ...+.+|++++|||||+|+|+.....++..+...+....+ .++|++||++++...|+
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d 877 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVAD 877 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcC
Confidence 455677777665432 2235789999999999999999888874444334444223 47999999999888777
Q ss_pred h
Q 002722 787 E 787 (888)
Q Consensus 787 ~ 787 (888)
+
T Consensus 878 ~ 878 (895)
T PRK01156 878 V 878 (895)
T ss_pred e
Confidence 6
|
|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.003 Score=67.02 Aligned_cols=104 Identities=16% Similarity=0.186 Sum_probs=64.1
Q ss_pred eEEEEEecCCCChhHHHhhhhHHHhhhhcCcccccccccccHHHHHHHhcCCchhhhhccchhHHHHHHHHHHHHhCCCC
Q 002722 657 WFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDR 736 (888)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~~~~~a~~g~~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~~~~ 736 (888)
..++|+||.|+|||.|+.+++.... +-|..|- .++ +..++..+... ...+. ....++......
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~--~~g~~v~----~i~-~~~l~~~l~~~--~~~~~--------~~~~~l~~l~~~ 164 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLL--AKGRSVI----VVT-VPDVMSRLHES--YDNGQ--------SGEKFLQELCKV 164 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH--HcCCCeE----EEE-HHHHHHHHHHH--Hhccc--------hHHHHHHHhcCC
Confidence 4689999999999999999987554 2232221 111 12233322111 00010 112355666789
Q ss_pred cEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEecC
Q 002722 737 SLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHF 778 (888)
Q Consensus 737 slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~ 778 (888)
+||+|||.|.--.+.....+...++++--+ .+.++|++|-.
T Consensus 165 dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~-~~~ptiitSNl 205 (248)
T PRK12377 165 DLLVLDEIGIQRETKNEQVVLNQIIDRRTA-SMRSVGMLTNL 205 (248)
T ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHHHHh-cCCCEEEEcCC
Confidence 999999998765555566666778777654 46788888876
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 888 | ||||
| 2o8b_A | 934 | Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T M | 0.0 | ||
| 2o8e_A | 934 | Human Mutsalpha (Msh2MSH6) BOUND TO A G T MISPAIR, | 0.0 | ||
| 1nne_A | 765 | Crystal Structure Of The Muts-adpbef3-dna Complex L | 9e-74 | ||
| 1ewr_A | 649 | Crystal Structure Of Taq Muts Length = 649 | 2e-69 | ||
| 1ewq_A | 765 | Crystal Structure Taq Muts Complexed With A Heterod | 6e-69 | ||
| 1fw6_A | 768 | Crystal Structure Of A Taq Muts-Dna-Adp Ternary Com | 6e-69 | ||
| 1oh5_A | 800 | The Crystal Structure Of E. Coli Muts Binding To Dn | 2e-65 | ||
| 1wbd_A | 800 | Crystal Structure Of E. Coli Dna Mismatch Repair En | 3e-65 | ||
| 1wbb_A | 800 | Crystal Structure Of E. Coli Dna Mismatch Repair En | 3e-65 | ||
| 1wb9_A | 800 | Crystal Structure Of E. Coli Dna Mismatch Repair En | 3e-65 | ||
| 3k0s_A | 799 | Crystal Structure Of E.Coli Dna Mismatch Repair Pro | 1e-64 | ||
| 1ng9_A | 800 | E.Coli Muts R697a: An Atpase-Asymmetry Mutant Lengt | 2e-64 | ||
| 3thw_B | 918 | Human Mutsbeta Complexed With An Idl Of 4 Bases (Lo | 5e-62 | ||
| 1e3m_A | 800 | The Crystal Structure Of E. Coli Muts Binding To Dn | 1e-57 | ||
| 2o8b_B | 1022 | Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T M | 1e-55 |
| >pdb|2O8B|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T MISPAIR Length = 934 | Back alignment and structure |
|
| >pdb|2O8E|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO A G T MISPAIR, WITH ADP BOUND TO Msh2 Only Length = 934 | Back alignment and structure |
|
| >pdb|1NNE|A Chain A, Crystal Structure Of The Muts-adpbef3-dna Complex Length = 765 | Back alignment and structure |
|
| >pdb|1EWR|A Chain A, Crystal Structure Of Taq Muts Length = 649 | Back alignment and structure |
|
| >pdb|1EWQ|A Chain A, Crystal Structure Taq Muts Complexed With A Heteroduplex Dna At 2.2 A Resolution Length = 765 | Back alignment and structure |
|
| >pdb|1FW6|A Chain A, Crystal Structure Of A Taq Muts-Dna-Adp Ternary Complex Length = 768 | Back alignment and structure |
|
| >pdb|1OH5|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With A C:a Mismatch Length = 800 | Back alignment and structure |
|
| >pdb|1WBD|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme Muts, E38q Mutant, In Complex With A G.T Mismatch Length = 800 | Back alignment and structure |
|
| >pdb|1WBB|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme Muts, E38a Mutant, In Complex With A G.T Mismatch Length = 800 | Back alignment and structure |
|
| >pdb|1WB9|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme Muts, E38t Mutant, In Complex With A G.T Mismatch Length = 800 | Back alignment and structure |
|
| >pdb|3K0S|A Chain A, Crystal Structure Of E.Coli Dna Mismatch Repair Protein Muts, D693n Mutant, In Complex With Gt Mismatched Dna Length = 799 | Back alignment and structure |
|
| >pdb|1NG9|A Chain A, E.Coli Muts R697a: An Atpase-Asymmetry Mutant Length = 800 | Back alignment and structure |
|
| >pdb|3THW|B Chain B, Human Mutsbeta Complexed With An Idl Of 4 Bases (Loop4) And Adp Length = 918 | Back alignment and structure |
|
| >pdb|1E3M|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With A G:t Mismatch Length = 800 | Back alignment and structure |
|
| >pdb|2O8B|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T MISPAIR Length = 1022 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* Length = 934 | Back alignment and structure |
|---|
Score = 989 bits (2559), Expect = 0.0
Identities = 383/879 (43%), Positives = 548/879 (62%), Gaps = 33/879 (3%)
Query: 9 PELKLDAKQARGFLSFYKTLPND-TRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQ 67
L+L++ GF+ F++ +P T VR FDR D+YTAHGE+A A+ + T ++
Sbjct: 7 ETLQLESAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKY 66
Query: 68 LG-TGSDALSSVSVSKNMFETIARDLLLERTDHTLELYEGSGS-------NWRLVKSGTP 119
+G G+ L SV +SK FE+ +DLLL R + +E+Y+ +W L +P
Sbjct: 67 MGPAGAKNLQSVVLSKMNFESFVKDLLLVR-QYRVEVYKNRAGNKASKENDWYLAYKASP 125
Query: 120 GNLGSYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFT 179
GNL +ED+LF NN+M + +V + + + +G+GYVD +R LGL EF D+ F+
Sbjct: 126 GNLSQFEDILFGNNDMSASIGVVGVKMSAVDGQRQVGVGYVDSIQRKLGLCEFPDNDQFS 185
Query: 180 NVESALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRL 239
N+E+ L+ +G KEC+LP + + LR + R G+++TERKK +F T+D+ QDL+RL
Sbjct: 186 NLEALLIQIGPKECVLP-GGETAGDMGKLRQIIQRGGILITERKKADFSTKDIYQDLNRL 244
Query: 240 VRGSVEPVRDLVS----GFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDS 295
++G + ++A +L A++ + ELLSD+SN+G + + + YM+LD
Sbjct: 245 LKGKKGEQMNSAVLPEMENQVAVSSLSAVIKFLELLSDDSNFGQFELTTFDFSQYMKLDI 304
Query: 296 AAMRALNVLE-SKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIV 354
AA+RALN+ + S D + SL L+N+ T G+RL++ W+KQPL+D N I RL++V
Sbjct: 305 AAVRALNLFQGSVEDTTGSQSLAALLNKCKTP-QGQRLVNQWIKQPLMDKNRIEERLNLV 363
Query: 355 QAFVDDTALRQDLR-QHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQ 413
+AFV+D LRQ L+ L+R D+ RL +++ A LQ +LYQ +LP + AL++
Sbjct: 364 EAFVEDAELRQTLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGINQLPNVIQALEK 423
Query: 414 YEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSAL 473
+EG+ L+ ++ PL L D +KF ++ET++D+DQ+EN E+++ S+D LS L
Sbjct: 424 HEGKHQKLLLAVFVTPLTDLRSD--FSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSEL 481
Query: 474 KNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQF 533
+ LE+++ S A DL L K +KLD QFG+ FR+T KEE +R F
Sbjct: 482 REIMNDLEKKMQSTLISAARDLGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNN--KNF 539
Query: 534 IVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATML 593
++ +K+GVKFTN+KL L ++Y K EY+ Q +V ++ + + E ++L +L
Sbjct: 540 STVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKEIVNISSGYVEPMQTLNDVL 599
Query: 594 SELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIR 653
++LD ++SFA +++ P PY RP I G IIL+ SRH CVE QD + FIPND +
Sbjct: 600 AQLDAVVSFAHVSNGAPVPYVRPAILEKGQGRIILKASRHACVEVQDEIAFIPNDVYFEK 659
Query: 654 GKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQL 713
K F IITGPNMGGKST+IRQ GV +LMAQ+G FVPC+ A +S+ DCI ARVGAGD QL
Sbjct: 660 DKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQL 719
Query: 714 RGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTL 773
+GVSTFM EMLETASIL+ AT SLIIIDELGRGTSTYDGFGLAWAI E++ +I A +
Sbjct: 720 KGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCM 779
Query: 774 FATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGI 833
FATHFHELTALA Q+ V N HV+A LTMLY+V+ G CDQSFGI
Sbjct: 780 FATHFHELTALA---------NQIPTVNNLHVTALTT--EETLTMLYQVKKGVCDQSFGI 828
Query: 834 HVAEFANFPESVVTLAREKAAELEDFTPSAVISDDAKIE 872
HVAE ANFP+ V+ A++KA ELE+F +E
Sbjct: 829 HVAELANFPKHVIECAKQKALELEEFQYIGESQGYDIME 867
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* Length = 1022 | Back alignment and structure |
|---|
Score = 511 bits (1319), Expect = e-167
Identities = 181/797 (22%), Positives = 313/797 (39%), Gaps = 112/797 (14%)
Query: 150 ENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLR 209
+ G+ +VD + + +F DD H + + + + L + S E KT+
Sbjct: 213 GHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFE-KGNLSKETKTIL 271
Query: 210 DALTRCGVMLTERKKTE----------------FKTRDL-------VQDLDRLVRGSVEP 246
+ C + ++ F+ + Q L + S
Sbjct: 272 KSSLSCSLQEGLIPGSQFWDASKTLRTLLEEEYFREKLSDGIGVMLPQVLKGMTSESDSI 331
Query: 247 VRDLVSGFEIAPGALGALLSYAE------LLSDESNYGNYY-------------IRKYSL 287
E+A ALG + Y + L +N+ Y
Sbjct: 332 GLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDTVSTTRSGAIFTKA 391
Query: 288 DSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEI 347
M LD+ + L + + T+ + +L ++ T GKRLL WL PL + I
Sbjct: 392 YQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERVDTCHTP-FGKRLLKQWLCAPLCNHYAI 450
Query: 348 NARLDIVQAFVDDTALRQDLRQHLKRISDIERLM-----------------------HNL 384
N RLD ++ + ++ + LK++ D+ERL+
Sbjct: 451 NDRLDAIEDLMVVPDKISEVVELLKKLPDLERLLSKIHNVGSPLKSQNHPDSRAIMYEET 510
Query: 385 EKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIA 444
+ + + + + I +++ F S I ++ + + + +
Sbjct: 511 TYSKKKIIDFLSALEGFKVMCKIIGIMEEVADGFKSKILKQVISLQTKNPEGRFPDLTVE 570
Query: 445 LVETSVDLDQL---ENGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDK 501
L D + G + +D+ + E+ + ++ + + +
Sbjct: 571 LNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQRNRIGC---R 627
Query: 502 ALKLDKGTQFGHVFRITKKEEPK------IRKKLTTQFIVLETRKDGVKFTNTKLKKLGD 555
+ + + I + + K T+K ++ ++K
Sbjct: 628 TIVYWGIGRNRYQLEIPENFTTRNLPEEYELK----S-----TKKGCKRYWTKTIEKKLA 678
Query: 556 QYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTR 615
E K+ + R+ + ++S ++ LDVLL A+ + P R
Sbjct: 679 NLINAEERRDVSLKDCMRRLFYNFDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCR 738
Query: 616 PDINPP--DVGDIILEGSRHPCVEAQ-DWVNFIPNDCKL-------IRGKSWFQIITGPN 665
P I P + L+GSRHPC+ +FIPND + GK++ ++TGPN
Sbjct: 739 PVILLPEDTPPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPN 798
Query: 666 MGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLE 725
MGGKST +RQ G+ +MAQ+G +VP + ++ D +F R+GA D + G STF E+ E
Sbjct: 799 MGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSE 858
Query: 726 TASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALA 785
TASIL AT SL+++DELGRGT+T+DG +A A+ + L E I+ TLF+TH+H L
Sbjct: 859 TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDY 918
Query: 786 HENANEFNTKQMVGVANYHVSAHI-----DSTSRKLTMLYKVEPGACDQSFGIHVAEFAN 840
+N V H++ + D + +T LYK GAC +S+G + A AN
Sbjct: 919 SQNV---------AVRLGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAARLAN 969
Query: 841 FPESVVTLAREKAAELE 857
PE V+ KA E E
Sbjct: 970 LPEEVIQKGHRKAREFE 986
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* Length = 918 | Back alignment and structure |
|---|
Score = 500 bits (1289), Expect = e-163
Identities = 178/753 (23%), Positives = 331/753 (43%), Gaps = 84/753 (11%)
Query: 149 RENGCTIGLGYVDL-TKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSE--- 204
++ IG+ V T V+ F D + + +E+ + +L E LLP+ + +E
Sbjct: 166 KKGNIFIGIVGVQPATGEVV-FDSFQDSASRSELETRMSSLQPVELLLPSALSEQTEALI 224
Query: 205 CKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDR------LVRGSVEPVRDLVSGFEIAP 258
+ ++ + + F+ Q + + + + +V+ +
Sbjct: 225 HRATSVSVQDDRIRVERMDNIYFEYSHAFQAVTEFYAKDTVDIKGSQIISGIVNLEKPVI 284
Query: 259 GALGALLSYAELLSDESNYG--NYYIRKYSLDSYMRLDSAAMRALNVLESKTDANKNFSL 316
+L A++ Y + + E + + S +M ++ +R L +L+++TD SL
Sbjct: 285 CSLAAIIKYLKEFNLEKMLSKPENFKQLSSKMEFMTINGTTLRNLEILQNQTDMKTKGSL 344
Query: 317 FGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFV-DDTALRQDLRQHLKRIS 375
+++ T T+ G+R L W+ QPLL + EINARLD V + ++++ + HL+++
Sbjct: 345 LWVLDHTKTS-FGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQIENHLRKLP 403
Query: 376 DIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQY--EGQFSSLIKERY--LDPLE 431
DIER + ++ ++ Q+ + ++ L A+ S L++ + L
Sbjct: 404 DIERGLCSIYHKKCSTQEFFLIVKTLYHLKSEFQAIIPAVNSHIQSDLLRTVILEIPELL 463
Query: 432 SLTDDDHLNKFIALVETSVDLD---QLENGEYMISSSYDTGLSAL-KNEQESLERQIHSL 487
S + ++ + E + D L K+E + + +I
Sbjct: 464 SPVE---------HYLKILNEQAAKVGDKTE-LFKDLSDFPLIKKRKDEIQGVIDEIRMH 513
Query: 488 HKQTASDLDLPVDKALKLDKGTQFGHVFRI--TKKEEPKI----RKKLTTQFIVLETRKD 541
++ L K T G F I I K +T K
Sbjct: 514 LQEIRKIL-----KNPSAQYVTVSGQEFMIEIKNSAVSCIPTDWVKVGST--------KA 560
Query: 542 GVKFTNTKLKKLGDQYQKVL---EEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDV 598
+F + + + Y+ + E+ ++ L+ +D
Sbjct: 561 VSRFHSPFIVEN---YRHLNQLREQLVLDCSAEWLDFLEKFSEHYHSLCKAVHHLATVDC 617
Query: 599 LLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQ--DWVNFIPNDCKLIRGKS 656
+ S A +A Y RP + + I+++ RHP ++ + ++PN+ L
Sbjct: 618 IFSLAKVAKQGD--YCRPTVQ--EERKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSE 673
Query: 657 WFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGV 716
IITGPNMGGKS++I+QV + +MAQ+GS+VP + A+I + D IF R+GA D +G
Sbjct: 674 RVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGR 733
Query: 717 STFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFAT 776
STFM+E+ +TA I++ AT +SL+I+DELGRGTST+DG +A+A E+ + ++++ TLF T
Sbjct: 734 STFMEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVT 793
Query: 777 HFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSR------------KLTMLYKVEP 824
H+ + L ++ V NYH+ + +T LY++
Sbjct: 794 HYPPVCELEKNYSH--------QVGNYHMGFLVSEDESKLDPGAAEQVPDFVTFLYQITR 845
Query: 825 GACDQSFGIHVAEFANFPESVVTLAREKAAELE 857
G +S+G++VA+ A+ P ++ A K+ ELE
Sbjct: 846 GIAARSYGLNVAKLADVPGEILKKAAHKSKELE 878
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* Length = 800 | Back alignment and structure |
|---|
Score = 468 bits (1208), Expect = e-153
Identities = 217/787 (27%), Positives = 344/787 (43%), Gaps = 142/787 (18%)
Query: 112 RLVKSGTPGNLGSYEDVLF---ANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKRVLG 168
R+V TPG + ++ L +N ++ A++ + G +D++
Sbjct: 112 RIV---TPGTI--SDEALLQERQDN------LLAAIWQD----SKGFGYATLDISSGRFR 156
Query: 169 LAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFK 228
L+E D + + L E L + + S + R L R EF+
Sbjct: 157 LSEPAD---RETMAAELQRTNPAELLYAEDFAEMSLIEGRR--------GLRRRPLWEFE 205
Query: 229 TRDLVQDLDRLVRGSVEPVRDL----VSGFEIAPGALGALLSYAEL--------LSDESN 276
Q L+ RDL V A G LL YA+ +
Sbjct: 206 IDTARQQLNLQFG-----TRDLVGFGVENAPRGLCAAGCLLQYAKDTQRTTLPHIRS--- 257
Query: 277 YGNYYIRKYSLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMW 336
I + +D+A R L + ++ +N +L +++ T T MG R+L W
Sbjct: 258 -----ITMEREQDSIIMDAATRRNLEITQNLAGGAEN-TLASVLDCTVTP-MGSRMLKRW 310
Query: 337 LKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVK 396
L P+ D + R + A D L+ L+++ D+ER++ L R A + + +
Sbjct: 311 LHMPVRDTRVLLERQQTIGALQD---FTAGLQPVLRQVGDLERILARLALRTARPRDLAR 367
Query: 397 LYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVET-------- 448
+ + +LP +R+ L+ + ++E+ + L D L + A+++T
Sbjct: 368 MRHAFQQLPELRAQLETVDSAPVQALREK-MGEFAELRD--LLER--AIIDTPPVLVRDG 422
Query: 449 -------SVDLDQLENGEYMISSSYDTGLSALKNEQESLERQ---IHSLHKQTASDLDLP 498
+ +LD+ ++ L L E ER+ + +L
Sbjct: 423 GVIASGYNEELDEWRA----LADGATDYLERL----EVRERERTGLDTL----------- 463
Query: 499 VDKALKLDKGTQFGHVFRITKKEEPK-----IRKKLTTQFIVLETRKDGVKFTNTKLKKL 553
K+ G+ +I++ + +R+ Q T K+ ++ +LK+
Sbjct: 464 -----KVGFNAVHGYYIQISRGQSHLAPINYMRR----Q-----TLKNAERYIIPELKEY 509
Query: 554 GDQYQKVL---EEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCP 610
D KVL + +K+L + + E + A+ L+ELDVL++ A+ A +
Sbjct: 510 ED---KVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYT-- 564
Query: 611 TPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKS 670
YT P D I + RHP VE FI N L + IITGPNMGGKS
Sbjct: 565 LNYTCPTFI--DKPGIRITEGRHPVVEQVLNEPFIANPLNLSPQRR-MLIITGPNMGGKS 621
Query: 671 TFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASIL 730
T++RQ + LMA +GS+VP + I D IF RVGA D G STFM EM ETA+IL
Sbjct: 622 TYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANIL 681
Query: 731 KGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENAN 790
AT+ SL+++DE+GRGTSTYDG LAWA E+L +I+A TLFATH+ ELT L
Sbjct: 682 HNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLP----- 736
Query: 791 EFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAR 850
++M GVAN H+ A + ++ V+ GA +S+G+ VA A P+ V+ AR
Sbjct: 737 ----EKMEGVANVHLDAL--EHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRAR 790
Query: 851 EKAAELE 857
+K ELE
Sbjct: 791 QKLRELE 797
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* Length = 765 | Back alignment and structure |
|---|
Score = 461 bits (1188), Expect = e-150
Identities = 224/785 (28%), Positives = 327/785 (41%), Gaps = 174/785 (22%)
Query: 112 RLVKSGTPGNLGSYEDVLFA--NNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKRVLGL 169
+L+ TPG L ++ L N + A+ G GL ++D++
Sbjct: 114 QLL---TPGTL--LQESLLPREAN------YLAAIAT-----GDGWGLAFLDVSTGEFKG 157
Query: 170 AEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKT 229
+ + L E LL E +++ +R
Sbjct: 158 TVL---KSKSALYDELFRHRPAEVLLAPELLENGAFLDE----------FRKRFPVMLSE 204
Query: 230 RDLVQDLDRLVRGSVEPVRDLVSGFEIAP----GALGALLSYAEL-------LSDESNYG 278
P A GALL+YA+ L
Sbjct: 205 APF-------------------EPEGEGPLALRRARGALLAYAQRTQGGALSLQP----- 240
Query: 279 NYYIRKYSLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLK 338
R Y ++MRL A +RAL V E + +LF +++ T TA G+RLL WL+
Sbjct: 241 ---FRFYDPGAFMRLPEATLRALEVFEPLRGQD---TLFSVLDETRTA-PGRRLLQSWLR 293
Query: 339 QPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLY 398
PLLD + ARLD V+ FV + ALR+ +R+ L R++D+ERL LE RA + + L
Sbjct: 294 HPLLDRGPLEARLDRVEGFVREGALREGVRRLLYRLADLERLATRLELGRASPKDLGALR 353
Query: 399 QSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVET---------- 448
+S LP +R+ L + G L L L + L ALVE
Sbjct: 354 RSLQILPELRALLGEEVG----------LPDLSPLKE--ELEA--ALVEDPPLKVSEGGL 399
Query: 449 -----SVDLDQLENGEYMISSSYDTGLSALKNEQESLERQ---IHSLHKQTASDLDLPVD 500
DLD L L E ER+ I +L
Sbjct: 400 IREGYDPDLDALRA----AHREGVAYFLEL----EERERERTGIPTL------------- 438
Query: 501 KALKLDKGTQFGHVFRITKKEEPK-----IRKKLTTQFIVLETRKDGVKFTNTKLKKLGD 555
K+ FG+ +T+ + Q T KD ++T ++K+
Sbjct: 439 ---KVGYNAVFGYYLEVTRPYYERVPKEYRPV----Q-----TLKDRQRYTLPEMKEKER 486
Query: 556 QYQKVL---EEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTP 612
+V + ++E+ V + A +E + A +L+ELDV + A++A
Sbjct: 487 ---EVYRLEALIRRREEEVFLEVRERAKRQAEALREAARILAELDVYAALAEVAVRYG-- 541
Query: 613 YTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTF 672
Y RP + + RHP VE + F+PND ++ +ITGPNM GKSTF
Sbjct: 542 YVRPRFGD----RLQIRAGRHPVVERR--TEFVPNDLEMAHE---LVLITGPNMAGKSTF 592
Query: 673 IRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG 732
+RQ + L+AQVGSFVP + A + + D I+ R+GA D G STFM EM E A ILK
Sbjct: 593 LRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALILKE 652
Query: 733 ATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEF 792
AT+ SL+++DE+GRGTS+ DG +A A+ E L E RA TLFATH+ ELTAL
Sbjct: 653 ATENSLVLLDEVGRGTSSLDGVAIATAVAEALH-ERRAYTLFATHYFELTALGLP----- 706
Query: 793 NTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREK 852
+ N HV+A + L ++V PG +S+G+ VA A P+ VV AR
Sbjct: 707 ------RLKNLHVAAR--EEAGGLVFYHQVLPGPASKSYGVEVAAMAGLPKEVVARARAL 758
Query: 853 AAELE 857
+
Sbjct: 759 LQAMA 763
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 74.9 bits (183), Expect = 8e-14
Identities = 86/530 (16%), Positives = 154/530 (29%), Gaps = 160/530 (30%)
Query: 20 GFL-SFYKTLPNDT--RAVRFFDRRDYYTAHGENATFI------AKTYYHTTTALRQL-- 68
FL S KT + ++RD + +N F + Y AL +L
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQRD--RLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149
Query: 69 ----------GTG-----SDALSSVSVSKNM-FE----TIAR----DLLLE-------RT 97
G+G D S V M F+ + + +LE +
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 98 DHTLELYEGSGSNWRLVKSGTPGNLG------SYEDVLFANNEMQDTPVIVALFPNFREN 151
D SN +L L YE+ L +Q+ A F
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA----F-NL 264
Query: 152 GCTIGLGYVDLTKRVLGLAEFLDDSH------------FTNVES-ALVA--LGCKECLLP 196
C I L LT R + +FL + T E +L+ L C+ LP
Sbjct: 265 SCKI-L----LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
Query: 197 TEAVKSSECKTLRDALTRCGVMLTERKKT--EFKTRDLVQDLDRLVRGSVE---P--VRD 249
E T L+ + + T +K + L ++ S+ P R
Sbjct: 320 REV-----LTTNPRRLSIIAESIRDGLATWDNWKHVNC-DKLTTIIESSLNVLEPAEYRK 373
Query: 250 LVSGFEIAP-------GALGAL---LSYAE------------LLSDESNYGNYYIRKYSL 287
+ + P L + + ++ L+ + I S+
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI--PSI 431
Query: 288 DSYMRLDSAAMRALN--VLES--------KTDANKN------FSLFG--LMNRTCTAGMG 329
+++ AL+ +++ D +S G L N
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN----IEHP 487
Query: 330 KRLLHMWLKQPLLDVNEINARL----DIVQAFVDDTALRQDLRQHLKRISDI----ERLM 381
+R+ + LD + ++ A Q L+ + I D ERL+
Sbjct: 488 ERMTLF--RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLV 545
Query: 382 HNLEK--RRAGLQQIVKLYQSSIRLPY---IRSALQQYEGQFSSLIKERY 426
+ + + ++ I Y +R AL + ++ +E +
Sbjct: 546 NAILDFLPKIE--------ENLICSKYTDLLRIALMAEDE---AIFEEAH 584
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 3e-06
Identities = 87/652 (13%), Positives = 178/652 (27%), Gaps = 192/652 (29%)
Query: 343 DVNEINARL-DIV----QAFVDDTALR--QD-LRQHLKR--ISDIERLMHNLEKRRAGLQ 392
+ E + DI+ AFVD+ + QD + L + I I + L
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR-LF 68
Query: 393 QIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDL 452
+ Q + ++ L+ S IK P S+ ++ +
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP--SMMTRMYIEQ----------R 116
Query: 453 DQLENGEYMISSSYDTGLSALKNEQESLERQIHS----LH------KQTASDLDLPVDKA 502
D+L N + + + L +++L + + K + L V +
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW---VALDVCLS 173
Query: 503 LKLDKGTQFGHVFRIT--KKEEP----KIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQ 556
K+ F +F + P ++ +KL Q + D
Sbjct: 174 YKVQCKMDFK-IFWLNLKNCNSPETVLEMLQKLLYQI-------------DPNWTSRSDH 219
Query: 557 YQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELD------VLLSFADLASSCP 610
+ + Q EL R++++ K L L +F +L SC
Sbjct: 220 SSNIKLRIHSIQAEL-RRLLKS--------KPYENCLLVLLNVQNAKAWNAF-NL--SCK 267
Query: 611 TPYTRPDINPPDV------GDIILEGSRHPCVEAQ------DWVNFIPND---------- 648
T D I L+ + +++ P D
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 649 --CKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFV----PCDRASISVRDC- 701
+I +S I G + V + L + S + P + R
Sbjct: 328 RRLSII-AES---IRDGLAT---WDNWKHVNCDKLTTIIESSLNVLEPAE-----YRKMF 375
Query: 702 ----IF-------ARVGAGDCQLRGVSTFMQEML--ETASILKGATDRSLIIIDELGRGT 748
+F + +S +++ + ++ SL+
Sbjct: 376 DRLSVFPPSAHIPTIL---------LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426
Query: 749 STYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANY---HV 805
S +L +++ +A H + + + + Y H+
Sbjct: 427 SIPSI---------YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477
Query: 806 SAHIDSTSR-----KLTMLY--------KV--EPGACDQSFGI------------HVAEF 838
H+ + M++ K+ + A + S I ++ +
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN 537
Query: 839 ANFPESVVTLAREKAAELEDFTPSA----VISDDAKIEVCAFISQFLMTKDG 886
E +V + DF P + S + + LM +D
Sbjct: 538 DPKYERLVN-------AILDFLPKIEENLICSKYTDL-----LRIALMAEDE 577
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 Length = 178 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 1e-05
Identities = 26/149 (17%), Positives = 47/149 (31%), Gaps = 25/149 (16%)
Query: 660 IITGPNMGGKSTFIRQVGVNILMAQVGSFV---------------------PCDRASISV 698
IITG GK+T ++++ V L + F + S
Sbjct: 4 IITGEPGVGKTTLVKKI-VERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 699 RDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAW 758
VG+ ++ +LE A R +IIIDE+G+ F
Sbjct: 63 FFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKF---R 119
Query: 759 AICEHLVEEIRAPTLFATHFHELTALAHE 787
+ ++ + + ++ L E
Sbjct: 120 DLVRQIMHDPNVNVVATIPIRDVHPLVKE 148
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 888 | ||||
| d1wb9a2 | 234 | c.37.1.12 (A:567-800) DNA repair protein MutS, the | 3e-60 | |
| d1ewqa2 | 224 | c.37.1.12 (A:542-765) DNA repair protein MutS, the | 5e-52 | |
| d1wb9a1 | 297 | a.113.1.1 (A:270-566) DNA repair protein MutS, dom | 9e-40 | |
| d1ewqa1 | 275 | a.113.1.1 (A:267-541) DNA repair protein MutS, dom | 2e-39 |
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 202 bits (515), Expect = 3e-60
Identities = 112/248 (45%), Positives = 143/248 (57%), Gaps = 14/248 (5%)
Query: 613 YTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTF 672
YT P D I + RHP VE FI N L + IITGPNMGGKST+
Sbjct: 1 YTCPTFI--DKPGIRITEGRHPVVEQVLNEPFIANPLNLSPQRR-MLIITGPNMGGKSTY 57
Query: 673 IRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG 732
+RQ + LMA +GS+VP + I D IF RVGA D G STFM EM ETA+IL
Sbjct: 58 MRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHN 117
Query: 733 ATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEF 792
AT+ SL+++DE+GRGTSTYDG LAWA E+L +I+A TLFATH+ ELT L +
Sbjct: 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEK----- 172
Query: 793 NTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREK 852
M GVAN H+ A + ++ V+ GA +S+G+ VA A P+ V+ AR+K
Sbjct: 173 ----MEGVANVHLDALEH--GDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQK 226
Query: 853 AAELEDFT 860
ELE +
Sbjct: 227 LRELESIS 234
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Score = 179 bits (455), Expect = 5e-52
Identities = 101/245 (41%), Positives = 137/245 (55%), Gaps = 23/245 (9%)
Query: 613 YTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTF 672
Y RP + + RHP VE + F+PND ++ +ITGPNM GKSTF
Sbjct: 1 YVRPRFGD----RLQIRAGRHPVVERRT--EFVPNDLEM---AHELVLITGPNMAGKSTF 51
Query: 673 IRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG 732
+RQ + L+AQVGSFVP + A + + D I+ R+GA D G STFM EM E A ILK
Sbjct: 52 LRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALILKE 111
Query: 733 ATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEF 792
AT+ SL+++DE+GRGTS+ DG +A A+ E + E RA TLFATH+ ELTAL
Sbjct: 112 ATENSLVLLDEVGRGTSSLDGVAIATAVAEA-LHERRAYTLFATHYFELTALGLPR---- 166
Query: 793 NTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREK 852
+ N HV+A + + L ++V PG +S+G+ VA A P+ VV AR
Sbjct: 167 -------LKNLHVAAREE--AGGLVFYHQVLPGPASKSYGVEVAAMAGLPKEVVARARAL 217
Query: 853 AAELE 857
+
Sbjct: 218 LQAMA 222
|
| >d1wb9a1 a.113.1.1 (A:270-566) DNA repair protein MutS, domain III {Escherichia coli [TaxId: 562]} Length = 297 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA repair protein MutS, domain III superfamily: DNA repair protein MutS, domain III family: DNA repair protein MutS, domain III domain: DNA repair protein MutS, domain III species: Escherichia coli [TaxId: 562]
Score = 147 bits (370), Expect = 9e-40
Identities = 64/315 (20%), Positives = 129/315 (40%), Gaps = 20/315 (6%)
Query: 294 DSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDI 353
D+A R L + ++ +N +L +++ T T MG R+L WL P+ D + R
Sbjct: 1 DAATRRNLEITQNLAGGAEN-TLASVLDCTVTP-MGSRMLKRWLHMPVRDTRVLLERQQT 58
Query: 354 VQAFVDDTALRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQ 413
+ A D L+ L+++ D+ER++ L R A + + ++ + +LP +R Q
Sbjct: 59 IGALQDF---TAGLQPVLRQVGDLERILARLALRTARPRDLARMRHAFQQLPELR---AQ 112
Query: 414 YEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSAL 473
E S+ ++ E D L + I L +I+S Y+ L
Sbjct: 113 LETVDSAPVQALREKMGEFAELRDLLERAII-----DTPPVLVRDGGVIASGYNEELDEW 167
Query: 474 KNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQF 533
+ + + L + L K + G+ +I++ + +
Sbjct: 168 RALADGATDYLERLEVRERERTGLDTLK---VGFNAVHGYYIQISRGQSHLAPIN----Y 220
Query: 534 IVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATML 593
+ +T K+ ++ +LK+ D+ + +K+L + + E + A+ L
Sbjct: 221 MRRQTLKNAERYIIPELKEYEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASAL 280
Query: 594 SELDVLLSFADLASS 608
+ELDVL++ A+ A +
Sbjct: 281 AELDVLVNLAERAYT 295
|
| >d1ewqa1 a.113.1.1 (A:267-541) DNA repair protein MutS, domain III {Thermus aquaticus [TaxId: 271]} Length = 275 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA repair protein MutS, domain III superfamily: DNA repair protein MutS, domain III family: DNA repair protein MutS, domain III domain: DNA repair protein MutS, domain III species: Thermus aquaticus [TaxId: 271]
Score = 145 bits (366), Expect = 2e-39
Identities = 76/294 (25%), Positives = 137/294 (46%), Gaps = 29/294 (9%)
Query: 315 SLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRI 374
+LF +++ T TA G+RLL WL+ PLLD + ARLD V+ FV + ALR+ +R+ L R+
Sbjct: 5 TLFSVLDETRTA-PGRRLLQSWLRHPLLDRGPLEARLDRVEGFVREGALREGVRRLLYRL 63
Query: 375 SDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLT 434
+D+ERL LE RA + + L +S LP +R+ L +
Sbjct: 64 ADLERLATRLELGRASPKDLGALRRSLQILPELRALLGEE-------------------V 104
Query: 435 DDDHLNKFIALVETSV--DLDQLENGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTA 492
L+ +E ++ D + +I YD L AL+ L ++
Sbjct: 105 GLPDLSPLKEELEAALVEDPPLKVSEGGLIREGYDPDLDALRAAHREGVAYFLELEERER 164
Query: 493 SDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKK 552
+P LK+ FG+ +T+ ++ K ++ ++T KD ++T ++K+
Sbjct: 165 ERTGIP---TLKVGYNAVFGYYLEVTRPYYERVPK----EYRPVQTLKDRQRYTLPEMKE 217
Query: 553 LGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLA 606
+ ++ + ++E+ V + A +E + A +L+ELDV + A++A
Sbjct: 218 KEREVYRLEALIRRREEEVFLEVRERAKRQAEALREAARILAELDVYAALAEVA 271
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 888 | |||
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 100.0 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 100.0 | |
| d1wb9a1 | 297 | DNA repair protein MutS, domain III {Escherichia c | 100.0 | |
| d1ewqa1 | 275 | DNA repair protein MutS, domain III {Thermus aquat | 100.0 | |
| d1wb9a4 | 115 | DNA repair protein MutS, domain I {Escherichia col | 99.96 | |
| d1ewqa4 | 120 | DNA repair protein MutS, domain I {Thermus aquatic | 99.95 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 99.86 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 99.85 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 99.85 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 99.85 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 99.85 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 99.85 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 99.84 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 99.84 | |
| d1wb9a3 | 153 | DNA repair protein MutS, domain II {Escherichia co | 99.83 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 99.83 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.83 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 99.82 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 99.81 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.8 | |
| d1ewqa3 | 146 | DNA repair protein MutS, domain II {Thermus aquati | 99.78 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 99.77 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 99.75 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 99.74 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 99.74 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 99.73 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 99.73 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.69 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.21 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 98.98 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.76 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.34 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.21 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.51 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.24 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 97.24 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 97.14 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 97.13 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 97.11 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 97.11 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 97.06 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 97.03 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.98 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 96.98 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.93 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 96.85 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 96.81 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.77 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.71 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 96.65 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.54 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 96.35 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.24 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 96.22 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 96.17 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 96.17 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.16 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.13 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.07 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 95.96 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.95 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 95.92 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 95.91 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.9 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 95.82 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 95.78 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 95.6 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.48 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 95.41 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.27 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.18 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.13 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.13 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.03 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 95.0 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 94.97 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 94.77 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 94.73 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.65 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 94.48 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 94.44 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.43 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 94.4 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 94.37 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 94.22 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 94.12 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.12 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 94.04 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 94.03 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 94.0 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 93.95 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 93.94 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 93.82 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 93.76 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 93.73 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 93.72 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 93.66 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 93.57 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 93.43 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 93.31 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 93.13 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 93.09 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 92.98 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 92.88 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 92.64 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 92.59 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 92.56 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 92.46 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 92.44 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 92.44 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 92.41 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 92.22 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 92.18 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 92.07 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 92.02 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 91.92 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 91.8 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 91.74 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 91.64 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 91.58 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 91.51 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 91.39 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 91.37 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 91.05 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 91.05 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 91.02 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 91.0 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 90.73 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 90.71 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 90.29 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 90.28 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 90.25 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 90.06 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 90.05 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 89.88 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 89.77 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 89.47 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 89.15 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 88.86 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 88.78 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 88.39 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 88.32 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 88.14 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 88.13 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 88.06 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 87.98 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 87.98 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 87.95 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 87.55 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 87.41 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 87.18 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 87.17 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 87.16 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 86.8 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 86.44 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 86.41 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 86.22 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 86.15 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 86.14 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 85.92 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 85.57 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 84.78 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 84.31 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 84.19 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 84.19 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 84.04 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 84.03 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 84.01 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 83.91 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 83.41 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 83.11 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 82.96 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 82.65 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 82.53 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 82.53 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 82.47 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 82.24 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 82.12 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 81.9 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 81.8 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 81.75 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 81.67 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 81.65 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 81.49 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 81.42 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 81.32 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 81.2 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 81.01 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 80.34 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 80.11 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 80.05 |
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=426.30 Aligned_cols=234 Identities=47% Similarity=0.712 Sum_probs=220.3
Q ss_pred CCCCCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 87784489997418998576760651258420048753457997079999159987157984444778662117633466
Q 002722 613 YTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCD 692 (888)
Q Consensus 613 ~~~P~~~~~~~~~l~i~~~rhp~~e~~~~~~~v~n~~~~~~~~~~~~~itGpN~~GKSTllr~i~~~~~laq~g~~vpa~ 692 (888)
||||+|+++ +.+.++++|||++|...+..|||||+.++ +..++++||||||||||||||++|++++|||+|+||||+
T Consensus 1 y~~P~~~~~--~~l~i~~~rHPlle~~~~~~~VpNdi~l~-~~~~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~VpA~ 77 (234)
T d1wb9a2 1 YTCPTFIDK--PGIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQ 77 (234)
T ss_dssp CBCCEECSS--SCEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSS
T ss_pred CCCCEECCC--CCEEEEEEECCEEECCCCCCCCCEEEEEC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEECC
T ss_conf 978778189--96899973787797446998264057988-995399995467313689999879999998729767417
Q ss_pred CCCCCHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 54521799999864980034205140489999999999838999399980999999945499999999999985399739
Q 002722 693 RASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPT 772 (888)
Q Consensus 693 ~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~~~~sLvllDE~~~gtd~~~~~~i~~~~~~~l~~~~~~~~ 772 (888)
.+.++++|+||++++..|++..+.|+|+.||.+++.|++.++++||||+||+|+||++.+|.++++++++++....++.+
T Consensus 78 ~a~~~~~d~I~~~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~ 157 (234)
T d1wb9a2 78 KVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALT 157 (234)
T ss_dssp EEEECCCCEEEEEEC-----------CHHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEE
T ss_pred CEECCCCHHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 66613442023487467534365318999999999999745466088532223587745666789876454320454428
Q ss_pred EEEECCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCCCCEEEEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 99906746989853112332233454276899999997479917786783379999968899999879999999999999
Q 002722 773 LFATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREK 852 (888)
Q Consensus 773 l~~TH~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~gi~vA~lag~p~~vi~rA~~~ 852 (888)
+++||++++...... .+.++++||....+ ++.+.|+|++.+|++++|||+++|+++|+|++||+||+++
T Consensus 158 i~tTH~~~l~~~~~~---------~~~v~~~~~~~~~~--~~~i~f~YkL~~G~~~~s~ai~iA~~~Glp~~ii~~A~~i 226 (234)
T d1wb9a2 158 LFATHYFELTQLPEK---------MEGVANVHLDALEH--GDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQK 226 (234)
T ss_dssp EEECSCGGGGGHHHH---------STTEEEEEEEEEEE--TTEEEEEEEEEESCCSSCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHC---------CCCEEEEEEEEEEC--CCCCEEEEEECCCCCCCCHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 985246877643312---------45547899887603--6840178774679999729999999919699999999999
Q ss_pred HHHHHCCC
Q ss_conf 99972239
Q 002722 853 AAELEDFT 860 (888)
Q Consensus 853 ~~~le~~~ 860 (888)
+++||+..
T Consensus 227 ~~~lE~~~ 234 (234)
T d1wb9a2 227 LRELESIS 234 (234)
T ss_dssp HHHHHTCC
T ss_pred HHHHHCCC
T ss_conf 99876359
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=100.00 E-value=0 Score=409.18 Aligned_cols=223 Identities=46% Similarity=0.713 Sum_probs=208.7
Q ss_pred CCCCCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 87784489997418998576760651258420048753457997079999159987157984444778662117633466
Q 002722 613 YTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCD 692 (888)
Q Consensus 613 ~~~P~~~~~~~~~l~i~~~rhp~~e~~~~~~~v~n~~~~~~~~~~~~~itGpN~~GKSTllr~i~~~~~laq~g~~vpa~ 692 (888)
||||+|.+. ++++++|||++|.. ..|||||+.++ +++.+||||||||||||||++|++++|||+|+||||+
T Consensus 1 y~~P~~~~~----~~i~~~rHPlle~~--~~~VpNdi~~~---~~~~iiTGpN~~GKSt~lk~i~l~~ilAq~G~~vpA~ 71 (224)
T d1ewqa2 1 YVRPRFGDR----LQIRAGRHPVVERR--TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAE 71 (224)
T ss_dssp CBCCEESSS----EEEEEECCTTGGGT--SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSS
T ss_pred CCCCCCCCC----EEEEECCCCEECCC--CCEECCEEEEC---CCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEECC
T ss_conf 978811782----78985718879489--97545558847---8679997887345323455658999998525046137
Q ss_pred CCCCCHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 54521799999864980034205140489999999999838999399980999999945499999999999985399739
Q 002722 693 RASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPT 772 (888)
Q Consensus 693 ~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~~~~sLvllDE~~~gtd~~~~~~i~~~~~~~l~~~~~~~~ 772 (888)
.+.++++|+||++++..|++..+.|+|+.||.+++.++..++++||||+||+|+||++.+|.+++++++++|.+ .++.+
T Consensus 72 ~~~i~~~d~I~~~~~~~d~~~~~~StF~~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~-~~~~~ 150 (224)
T d1ewqa2 72 EAHLPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE-RRAYT 150 (224)
T ss_dssp EEEECCCSEEEEECCC------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH-HTCEE
T ss_pred CEEEEECCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHH-CCCCE
T ss_conf 51994011699998777602378307898678898775028977278554545686233200258888888862-37613
Q ss_pred EEEECCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCCCCEEEEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 99906746989853112332233454276899999997479917786783379999968899999879999999999999
Q 002722 773 LFATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREK 852 (888)
Q Consensus 773 l~~TH~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~gi~vA~lag~p~~vi~rA~~~ 852 (888)
+++||++++..+. .+.+.++||.+..+ ++.++|+|++.+|+++.|||+++|+++|+|++||+||+++
T Consensus 151 i~tTH~~eL~~l~-----------~~~~~~~~~~~~~~--~~~~~f~Ykl~~G~~~~s~ai~iA~~~Glp~~II~rA~~i 217 (224)
T d1ewqa2 151 LFATHYFELTALG-----------LPRLKNLHVAAREE--AGGLVFYHQVLPGPASKSYGVEVAAMAGLPKEVVARARAL 217 (224)
T ss_dssp EEECCCHHHHTCC-----------CTTEEEEEEEEECC--SSSCEEEEEEEESCCSSCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred EEEEECHHHHHHH-----------HCCCCEEEEEEEEE--CCCEEEEEEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 7865202333221-----------02110699999981--7975898897237998639999999919699999999999
Q ss_pred HHHHHC
Q ss_conf 999722
Q 002722 853 AAELED 858 (888)
Q Consensus 853 ~~~le~ 858 (888)
++.|++
T Consensus 218 ~~~l~~ 223 (224)
T d1ewqa2 218 LQAMAA 223 (224)
T ss_dssp HHHHTT
T ss_pred HHHHHC
T ss_conf 999867
|
| >d1wb9a1 a.113.1.1 (A:270-566) DNA repair protein MutS, domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA repair protein MutS, domain III superfamily: DNA repair protein MutS, domain III family: DNA repair protein MutS, domain III domain: DNA repair protein MutS, domain III species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=346.80 Aligned_cols=293 Identities=20% Similarity=0.316 Sum_probs=254.8
Q ss_pred CHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHCC
Q ss_conf 48889760042367888875738898622147906899999883075999898999999999987094899999998505
Q 002722 294 DSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKR 373 (888)
Q Consensus 294 D~~Tl~~LEI~~~~~~~~~~~SLf~lLn~~t~T~~GkRlLr~WL~~Pl~d~~~I~~Rld~Ve~l~~~~~l~~~l~~~Lk~ 373 (888)
|++|++||||+.|..+ +.+||||++||+ |+||||+|+||+||++|++|+++|++|||+|++|..+ ...++..|++
T Consensus 1 D~~T~~nLEl~~~~~g-~~~~SL~~~ln~-c~T~~GkRlLr~wLl~Pl~d~~~I~~R~d~Ve~l~~~---~~~l~~~L~~ 75 (297)
T d1wb9a1 1 DAATRRNLEITQNLAG-GAENTLASVLDC-TVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGALQDF---TAGLQPVLRQ 75 (297)
T ss_dssp CHHHHHHTTSSSCTTS-CSTTSHHHHHCC-CSSHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHTGGG---HHHHHHHHHT
T ss_pred CHHHHHHHCCCCCCCC-CCCCCHHHHHCC-CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHC
T ss_conf 9768887476868899-988839999767-8990899999999867148999999999999999976---8779999962
Q ss_pred CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 99789999999841455799999999998799999999621100013466753766531139751899999998214686
Q 002722 374 ISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLD 453 (888)
Q Consensus 374 i~Dlerll~ri~~~~~~~~dl~~l~~~l~~i~~i~~~L~~~~~~~~~~l~~~~l~~l~~~~~~~~l~~l~~~i~~~id~~ 453 (888)
+||++|+++|+..+++++.++..+++.+..+..+...+....... ........ ..+..+.+.|+..++.+
T Consensus 76 l~Dierl~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~--~~~~~~~~~i~~~i~~~ 145 (297)
T d1wb9a1 76 VGDLERILARLALRTARPRDLARMRHAFQQLPELRAQLETVDSAP--------VQALREKM--GEFAELRDLLERAIIDT 145 (297)
T ss_dssp TCSHHHHHHHHHHTCCCHHHHHHHHHHHTTHHHHHHHHHSCCCHH--------HHHHHHHH--CCCHHHHHHHHHHBCSS
T ss_pred CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCHH--------HHHHHCCC--CCHHHHHHHHHHHHHCC
T ss_conf 220888898999876020278888889996425888766302256--------66421033--20034999999998446
Q ss_pred CC--CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCEEEEEEEEECCCCCCCCCCCCC
Q ss_conf 44--5786410489897699999999999999999999998323999446225533442259999805883110134675
Q 002722 454 QL--ENGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTT 531 (888)
Q Consensus 454 ~~--~~~~~~I~~g~d~~Ld~lr~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~l~~~~~~gy~i~v~~~~~~~~~~~~~~ 531 (888)
.. ...+++|++|++++||++++.+++..+.+.++..++...++++ .+++.|++..||+++++.+....++ .
T Consensus 146 ~~~~~~~~~~i~~g~~~~ld~l~~~~~~~~~~l~~l~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~--~-- 218 (297)
T d1wb9a1 146 PPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRERERTGLD---TLKVGFNAVHGYYIQISRGQSHLAP--I-- 218 (297)
T ss_dssp CCSCSTTCCCBCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT---TCEEEEETTTEEEEEEEHHHHTTSC--T--
T ss_pred CHHHHCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCEEEEEECCCEEEEECCCCCCCCC--C--
T ss_conf 76550169953788780689999998877789999999999971877---5148775215446640221111122--0--
Q ss_pred CEEEEEEECCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 38999873154999775699999999999999999999999999999974199999999999999999985588722
Q 002722 532 QFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASS 608 (888)
Q Consensus 532 ~~~~~~~~k~~~~f~t~~l~~L~~~~~~~~~~~~~~e~~i~~~l~~~~~~~~~~l~~~~~~ia~LD~l~slA~~a~~ 608 (888)
.|...+.+++.++|+|+++.+|+.++.++.+++.+.+.+++.++...+.+|.+.|..+++++|+|||++|||.+|.+
T Consensus 219 ~~~~~~~~~~~~~~~t~~l~~l~~~l~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~~~~iaeLD~l~S~A~~A~~ 295 (297)
T d1wb9a1 219 NYMRRQTLKNAERYIIPELKEYEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYT 295 (297)
T ss_dssp TCEEEEECSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 14563202463111027799999999999999999999999999999999999999999999999999999999986
|
| >d1ewqa1 a.113.1.1 (A:267-541) DNA repair protein MutS, domain III {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA repair protein MutS, domain III superfamily: DNA repair protein MutS, domain III family: DNA repair protein MutS, domain III domain: DNA repair protein MutS, domain III species: Thermus aquaticus [TaxId: 271]
Probab=100.00 E-value=0 Score=328.18 Aligned_cols=270 Identities=27% Similarity=0.390 Sum_probs=242.7
Q ss_pred CCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCH
Q ss_conf 75738898622147906899999883075999898999999999987094899999998505997899999998414557
Q 002722 312 KNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMHNLEKRRAGL 391 (888)
Q Consensus 312 ~~~SLf~lLn~~t~T~~GkRlLr~WL~~Pl~d~~~I~~Rld~Ve~l~~~~~l~~~l~~~Lk~i~Dlerll~ri~~~~~~~ 391 (888)
.+||||++||+ |+|+||+|+||+||++|++|+++|++|||+|++|.+++.++..++..|++++|++|+++|+..+++++
T Consensus 2 ~kgSL~~~ln~-t~T~~GkRlLr~wl~~Pl~d~~~I~~R~d~Ve~l~~~~~~~~~l~~~L~~i~Dler~l~~~~~~~~~~ 80 (275)
T d1ewqa1 2 GQDTLFSVLDE-TRTAPGRRLLQSWLRHPLLDRGPLEARLDRVEGFVREGALREGVRRLLYRLADLERLATRLELGRASP 80 (275)
T ss_dssp SCCCHHHHHCC-CSSHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCHHHHHHHHHTTCCCH
T ss_pred CCCCHHHHHCC-CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCC
T ss_conf 99868999767-98918999999998672589999999999999998393667889999854412678999998178883
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC--CCCCCCCCCCCCHH
Q ss_conf 9999999999879999999962110001346675376653113975189999999821468644--57864104898976
Q 002722 392 QQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQL--ENGEYMISSSYDTG 469 (888)
Q Consensus 392 ~dl~~l~~~l~~i~~i~~~L~~~~~~~~~~l~~~~l~~l~~~~~~~~l~~l~~~i~~~id~~~~--~~~~~~I~~g~d~~ 469 (888)
.++..+++++..+..+...+.... .. +.+..+.+.++.++..+.. ...+++|++|+|++
T Consensus 81 ~~~~~~~~~~~~~~~i~~~l~~~~-----------------~~--~~l~~l~~~i~~~i~~~~~~~~~~~~~i~~g~~~~ 141 (275)
T d1ewqa1 81 KDLGALRRSLQILPELRALLGEEV-----------------GL--PDLSPLKEELEAALVEDPPLKVSEGGLIREGYDPD 141 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTS-----------------CC--CCCHHHHHHHHHHBCSSCCSCTTSSCCBCTTSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC-----------------CC--CHHHHHHHHHHHHHHHCCHHHCCCCCEECCCCCHH
T ss_conf 379999999999889999987401-----------------35--27999999999998417685564669758999978
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCEEEEEEEEECCCCCCCCCCCCCCEEEEEEECCEEEEECHH
Q ss_conf 99999999999999999999998323999446225533442259999805883110134675389998731549997756
Q 002722 470 LSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTK 549 (888)
Q Consensus 470 Ld~lr~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~l~~~~~~gy~i~v~~~~~~~~~~~~~~~~~~~~~~k~~~~f~t~~ 549 (888)
||++++.+++....+.+.++++....+.+ .+++.+++..||+++++.+....++ .. |+..+++++..+|+|++
T Consensus 142 ld~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~t~~ 214 (275)
T d1ewqa1 142 LDALRAAHREGVAYFLELEERERERTGIP---TLKVGYNAVFGYYLEVTRPYYERVP--KE--YRPVQTLKDRQRYTLPE 214 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCT---TCEEEEETTTEEEEEEEGGGGGGSC--TT--CEEEEECSSEEEEECHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CEEEEECCCCCEEEEEHHHHHHHHH--HH--HHHHCCCCCEEEEECHH
T ss_conf 89999998768999999999999862876---0222422666546652044554420--11--34301234402562688
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999999999999999999974199999999999999999985588722
Q 002722 550 LKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASS 608 (888)
Q Consensus 550 l~~L~~~~~~~~~~~~~~e~~i~~~l~~~~~~~~~~l~~~~~~ia~LD~l~slA~~a~~ 608 (888)
+.+|+.++.++.+++...+.+++.++.+.+.+|.+.|..+++++|+|||++|||.+|..
T Consensus 215 ~~~l~~~l~~~~~~~~~~~~~i~~~l~~~~~~~~~~l~~~~~~ia~LD~l~SlA~vA~~ 273 (275)
T d1ewqa1 215 MKEKEREVYRLEALIRRREEEVFLEVRERAKRQAEALREAARILAELDVYAALAEVAVR 273 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88999999999999999999999999999999999999999999999999999999986
|
| >d1wb9a4 d.75.2.1 (A:2-116) DNA repair protein MutS, domain I {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: MutS N-terminal domain-like superfamily: DNA repair protein MutS, domain I family: DNA repair protein MutS, domain I domain: DNA repair protein MutS, domain I species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=3.6e-31 Score=217.70 Aligned_cols=101 Identities=16% Similarity=0.293 Sum_probs=92.0
Q ss_pred HHHCCCCHHHHHHCCCCC-CCEEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCEEECCHHHHHHHHHH
Q ss_conf 221033279998429999-9839999438600045544999999864331121204899-99873100297789999999
Q 002722 14 DAKQARGFLSFYKTLPND-TRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLGTG-SDALSSVSVSKNMFETIARD 91 (888)
Q Consensus 14 ~~~~~~~~~~qy~~lk~~-~d~il~f~~G~fYe~f~~DA~~~~~~l~~~~~~l~~~~~~-~~~~p~~gvp~~~~~~yl~~ 91 (888)
+..+.||||+|||++|++ ||+|+|||+|+|||+|++||.++++.|++. ++.++.. ..++||||||.|+++.|+++
T Consensus 5 ~~~~~TP~~~Qy~eiK~~~pd~ill~rvG~FYE~y~~DA~~~~~~L~i~---lt~~~~~~~~~v~m~GfP~~~l~~yl~~ 81 (115)
T d1wb9a4 5 NFDAHTPMMQQYLRLKAQHPEILLFYRMGDFYTLFYDDAKRASQLLDIS---LTKRGASAGEPIPMAGIPYHAVENYLAK 81 (115)
T ss_dssp CGGGSCHHHHHHHHHHHHSTTSEEEEEETTEEEEEHHHHHHHHHHHTCC---CEEECCSSSCCEEEEEEEGGGHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHEEE---EECCCCCCCCCEEEEECCHHHHHHHHHH
T ss_conf 1443898999999999878986999996865122466699987632058---8425778898637971678887899999
Q ss_pred HHHHCCCEEEEEEECCC--------CCCEEEEECCC
Q ss_conf 98422975899983148--------84006872389
Q 002722 92 LLLERTDHTLELYEGSG--------SNWRLVKSGTP 119 (888)
Q Consensus 92 Lv~~~G~~kVai~eQ~e--------~~R~v~rviTP 119 (888)
|+ ++| ||||||||++ ++|+|+||+||
T Consensus 82 Lv-~~G-~kVai~eQ~~~~~~~~~~~~R~VtrIiTP 115 (115)
T d1wb9a4 82 LV-NQG-ESVAICEQIGDPATSKGPVERKVVRIVTP 115 (115)
T ss_dssp HH-HTT-CCEEEEEECSCGGGCSSSCCEEEEEEECT
T ss_pred HH-HCC-CEEEEEEECCCCCCCCCCCEEEEEEEECC
T ss_conf 99-789-66999974257421489614758999892
|
| >d1ewqa4 d.75.2.1 (A:1-120) DNA repair protein MutS, domain I {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: MutS N-terminal domain-like superfamily: DNA repair protein MutS, domain I family: DNA repair protein MutS, domain I domain: DNA repair protein MutS, domain I species: Thermus aquaticus [TaxId: 271]
Probab=99.95 E-value=3.4e-29 Score=204.81 Aligned_cols=104 Identities=19% Similarity=0.249 Sum_probs=93.6
Q ss_pred HHHHCCCCHHHHHHCCCCC-CCEEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHHHHHHHHH
Q ss_conf 1221033279998429999-983999943860004554499999986433112120489999873100297789999999
Q 002722 13 LDAKQARGFLSFYKTLPND-TRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLGTGSDALSSVSVSKNMFETIARD 91 (888)
Q Consensus 13 ~~~~~~~~~~~qy~~lk~~-~d~il~f~~G~fYe~f~~DA~~~~~~l~~~~~~l~~~~~~~~~~p~~gvp~~~~~~yl~~ 91 (888)
....+.|||++||+++|++ ||+|+|||+|+|||+|++||+.+++.|++. ++.++....++||||||.|+++.|+++
T Consensus 8 ~~~~~ltPm~~qY~~~K~~~~d~Ivl~qvG~FYE~Y~~Da~~~~~~l~i~---l~~~~~~~~~~~maGfP~~~l~~yl~~ 84 (120)
T d1ewqa4 8 EGPGPLPPLLQQYVELRDQYPDYLLLFQVGDFYECFGEDAERLARALGLV---LTHKTSKDFTTPMAGIPLRAFEAYAER 84 (120)
T ss_dssp SCCSCCCHHHHHHHHHHHHCTTSEEEEEETTEEEEEHHHHHHHHHHHTCC---CEEEECSSCEEEEEEEEGGGHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHCCCEEEEEEECCEEEECCCHHHHHHHHHCCE---EEECCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 78878898999999999878996999982889897543599999973846---762035789874026877578999999
Q ss_pred HHHHCCCEEEEEEECCC--------CCCEEEEECCCCC
Q ss_conf 98422975899983148--------8400687238997
Q 002722 92 LLLERTDHTLELYEGSG--------SNWRLVKSGTPGN 121 (888)
Q Consensus 92 Lv~~~G~~kVai~eQ~e--------~~R~v~rviTPGt 121 (888)
|+ ++| |+|+||||++ ++|+|++|+||||
T Consensus 85 L~-~~G-ytV~v~eQ~e~~~~~~~~~~R~vt~I~SPGT 120 (120)
T d1ewqa4 85 LL-KMG-FRLAVADQVEPAEEAEGLVRREVTQLLTPGT 120 (120)
T ss_dssp HH-HTT-CCEEEEEECSCGGGCSSSCCEEEEEEECGGG
T ss_pred HH-HCC-CEEEEEEECCCCCCCCCCCEEEEEEEECCCC
T ss_conf 99-879-4599998714654469973676889889899
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=99.86 E-value=3.5e-21 Score=152.46 Aligned_cols=159 Identities=13% Similarity=0.104 Sum_probs=116.8
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH--------------------HHHHCC-CCCCCCCC---CC
Q ss_conf 8420048753457997079999159987157984444778--------------------662117-63346654---52
Q 002722 641 WVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI--------------------LMAQVG-SFVPCDRA---SI 696 (888)
Q Consensus 641 ~~~~v~n~~~~~~~~~~~~~itGpN~~GKSTllr~i~~~~--------------------~laq~g-~~vpa~~~---~~ 696 (888)
+...+.+|++|++.+|++++|.|||||||||++|+++++. ..++.| .|+|.... .+
T Consensus 17 g~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~l 96 (240)
T d1ji0a_ 17 GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPEL 96 (240)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTS
T ss_pred CCEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 99888830257888997999999999859999999967888880389842443446608888874235567655457763
Q ss_pred CHHHHHH--------------------HHC-CCCHHHHHCCCHHHHHHHHHHHHHH-HCCCCCEEEEECCCCCCCHHHHH
Q ss_conf 1799999--------------------864-9800342051404899999999998-38999399980999999945499
Q 002722 697 SVRDCIF--------------------ARV-GAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGF 754 (888)
Q Consensus 697 ~~~d~i~--------------------~~~-~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~sLvllDE~~~gtd~~~~~ 754 (888)
++.+.++ ..+ +..+......++++++++|...+.+ .+.+|+++|+|||++|+|+....
T Consensus 97 tv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~ 176 (240)
T d1ji0a_ 97 TVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVS 176 (240)
T ss_dssp BHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHH
T ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHHHHCCHHHCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHH
T ss_conf 69999998887327888999999999987417688875854338999999999999998299874003988679999999
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCHH-HHHHHHHCCCCCCCCCCCCEEEEEEEEEEE
Q ss_conf 99999999998539973999906746-989853112332233454276899999997
Q 002722 755 GLAWAICEHLVEEIRAPTLFATHFHE-LTALAHENANEFNTKQMVGVANYHVSAHID 810 (888)
Q Consensus 755 ~i~~~~~~~l~~~~~~~~l~~TH~~~-l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 810 (888)
.+ +.+++.+.+ .|++++++||+.+ ...++++ ...+..+++.....
T Consensus 177 ~i-~~~i~~l~~-~g~til~~tH~l~~~~~~~dr---------v~vl~~G~iv~~g~ 222 (240)
T d1ji0a_ 177 EV-FEVIQKINQ-EGTTILLVEQNALGALKVAHY---------GYVLETGQIVLEGK 222 (240)
T ss_dssp HH-HHHHHHHHH-TTCCEEEEESCHHHHHHHCSE---------EEEEETTEEEEEEE
T ss_pred HH-HHHHHHHHH-CCCEEEEEECCHHHHHHHCCE---------EEEEECCEEEEECC
T ss_conf 99-999999996-899899995889999996999---------99998999999848
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=99.85 E-value=6.6e-21 Score=150.67 Aligned_cols=159 Identities=18% Similarity=0.151 Sum_probs=120.0
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHH-------------------HHHCCCCCCCCCC---CCCH
Q ss_conf 84200487534579970799991599871579844447786-------------------6211763346654---5217
Q 002722 641 WVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL-------------------MAQVGSFVPCDRA---SISV 698 (888)
Q Consensus 641 ~~~~v~n~~~~~~~~~~~~~itGpN~~GKSTllr~i~~~~~-------------------laq~g~~vpa~~~---~~~~ 698 (888)
+...+.++++|++.+|++++|.|||||||||++|+++++.. +...-+|+|.... .+.+
T Consensus 13 g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~ltv 92 (238)
T d1vpla_ 13 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQG 92 (238)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBH
T ss_pred CCEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHHHEEEEEECCCCCCCCCH
T ss_conf 99999806256884897999999999999999999966988788879998672446839887218675001546878667
Q ss_pred H---------------------HHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHH-HCCCCCEEEEECCCCCCCHHHHHHH
Q ss_conf 9---------------------99998649800342051404899999999998-3899939998099999994549999
Q 002722 699 R---------------------DCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGL 756 (888)
Q Consensus 699 ~---------------------d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~sLvllDE~~~gtd~~~~~~i 756 (888)
. ++....++..+......++++++++|...+.+ .+++|.++|+|||++|+|+.....+
T Consensus 93 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i 172 (238)
T d1vpla_ 93 IEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREV 172 (238)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHH
T ss_conf 78889899861799899999999999867978888504533799898999999998659998873379889798999999
Q ss_pred HHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHCCCCCCCCCCCCEEEEEEEEEEE
Q ss_conf 99999999853997399990674698-9853112332233454276899999997
Q 002722 757 AWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSAHID 810 (888)
Q Consensus 757 ~~~~~~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 810 (888)
+.++..+.+ .|.+++++||+.+.+ .+|++ ...+.++++....+
T Consensus 173 -~~~i~~~~~-~g~tii~~tH~l~~~~~~~dr---------v~vl~~G~iv~~g~ 216 (238)
T d1vpla_ 173 -RKILKQASQ-EGLTILVSSHNMLEVEFLCDR---------IALIHNGTIVETGT 216 (238)
T ss_dssp -HHHHHHHHH-TTCEEEEEECCHHHHTTTCSE---------EEEEETTEEEEEEE
T ss_pred -HHHHHHHHH-CCCEEEEEECCHHHHHHHCCE---------EEEEECCEEEEECC
T ss_conf -999999996-599899995989999996999---------99998999999928
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.85 E-value=7.2e-21 Score=150.45 Aligned_cols=153 Identities=16% Similarity=0.170 Sum_probs=112.6
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHH-------------------------HHHCCCCCCCCCC---C
Q ss_conf 00487534579970799991599871579844447786-------------------------6211763346654---5
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL-------------------------MAQVGSFVPCDRA---S 695 (888)
Q Consensus 644 ~v~n~~~~~~~~~~~~~itGpN~~GKSTllr~i~~~~~-------------------------laq~g~~vpa~~~---~ 695 (888)
.+.++++|++.+|++++|.|||||||||+|++++++.. ..++| +|++... .
T Consensus 19 ~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r~~~ig-~v~Q~~~l~~~ 97 (230)
T d1l2ta_ 19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIG-FVFQQFNLIPL 97 (230)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEE-EECTTCCCCTT
T ss_pred EEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHHCCEEE-EEECCHHHCCC
T ss_conf 98713377884997999988999982165575068877776626999998576885551231255577-88041241768
Q ss_pred CCHHH------------------------HHHHHCCCCHHH-HHCCCHHHHHHHHHHHHHH-HCCCCCEEEEECCCCCCC
Q ss_conf 21799------------------------999864980034-2051404899999999998-389993999809999999
Q 002722 696 ISVRD------------------------CIFARVGAGDCQ-LRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTS 749 (888)
Q Consensus 696 ~~~~d------------------------~i~~~~~~~d~~-~~~~s~f~~e~~~~~~il~-~~~~~sLvllDE~~~gtd 749 (888)
.++.+ .++..++..+.. ......++++++|...|.+ .+++|.++|+|||++|+|
T Consensus 98 ~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD 177 (230)
T d1l2ta_ 98 LTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALD 177 (230)
T ss_dssp SCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSC
T ss_pred CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf 66888775788872247899999999999988762423455348802389999999998756522788899468765469
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCEEEEEEEE
Q ss_conf 4549999999999998539973999906746989853112332233454276899999
Q 002722 750 TYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSA 807 (888)
Q Consensus 750 ~~~~~~i~~~~~~~l~~~~~~~~l~~TH~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (888)
+.....+ +.++..+.++.|++++++||+.++++++++ ...+.+|++..
T Consensus 178 ~~~~~~i-~~~l~~l~~~~g~tii~vTHd~~~a~~~dr---------v~~m~~G~Iv~ 225 (230)
T d1l2ta_ 178 SKTGEKI-MQLLKKLNEEDGKTVVVVTHDINVARFGER---------IIYLKDGEVER 225 (230)
T ss_dssp HHHHHHH-HHHHHHHHHTTCCEEEEECSCHHHHTTSSE---------EEEEETTEEEE
T ss_pred HHHHHHH-HHHHHHHHHHHCCEEEEECCCHHHHHHCCE---------EEEEECCEEEE
T ss_conf 8999999-999999998439999998788899986998---------99998999999
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.85 E-value=2e-21 Score=154.13 Aligned_cols=160 Identities=13% Similarity=0.067 Sum_probs=120.0
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH------------------HCCCCCCCCCC---CCCH-
Q ss_conf 8420048753457997079999159987157984444778662------------------11763346654---5217-
Q 002722 641 WVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA------------------QVGSFVPCDRA---SISV- 698 (888)
Q Consensus 641 ~~~~v~n~~~~~~~~~~~~~itGpN~~GKSTllr~i~~~~~la------------------q~g~~vpa~~~---~~~~- 698 (888)
++..+.++++|++.+|++++|.|||||||||++|+++++.... +--.|||++.. .+++
T Consensus 17 g~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~ 96 (239)
T d1v43a3 17 GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVY 96 (239)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHH
T ss_pred CCEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCCCEEEEEEECHHHCCCCHHH
T ss_conf 99999813067887998999999999829999999975899987879991641354770001589980033534222099
Q ss_pred --------------------HHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHH-HCCCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf --------------------999998649800342051404899999999998-38999399980999999945499999
Q 002722 699 --------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLA 757 (888)
Q Consensus 699 --------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~sLvllDE~~~gtd~~~~~~i~ 757 (888)
++.++..++..+......+.++++++|...+.+ .+.+|+++|+|||++|+|+.....+
T Consensus 97 enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i- 175 (239)
T d1v43a3 97 ENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAM- 175 (239)
T ss_dssp HHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHH-
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHH-
T ss_conf 9999999873999999999999999875985566099546999998899997664049982430688666898999899-
Q ss_pred HHHHHHHHHCCCCEEEEEECCHHHH-HHHHHCCCCCCCCCCCCEEEEEEEEEEE
Q ss_conf 9999999853997399990674698-9853112332233454276899999997
Q 002722 758 WAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSAHID 810 (888)
Q Consensus 758 ~~~~~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 810 (888)
+.++..+.++.|.+++++||+.+.+ .++++ ...+.++++....+
T Consensus 176 ~~ll~~l~~~~g~tii~vTHd~~~a~~~~dr---------i~vm~~G~iv~~G~ 220 (239)
T d1v43a3 176 RAEIKKLQQKLKVTTIYVTHDQVEAMTMGDR---------IAVMNRGQLLQIGS 220 (239)
T ss_dssp HHHHHHHHHHHTCEEEEEESCHHHHHHHCSE---------EEEEETTEEEEEEC
T ss_pred HHHHHHHHHHCCCEEEEEECCHHHHHHHCCE---------EEEEECCEEEEECC
T ss_conf 9999999873198079994899999986999---------99998999999859
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=2.3e-21 Score=153.64 Aligned_cols=159 Identities=16% Similarity=0.083 Sum_probs=118.9
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH------------------HCCCCCCCCCCCC---C--
Q ss_conf 8420048753457997079999159987157984444778662------------------1176334665452---1--
Q 002722 641 WVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA------------------QVGSFVPCDRASI---S-- 697 (888)
Q Consensus 641 ~~~~v~n~~~~~~~~~~~~~itGpN~~GKSTllr~i~~~~~la------------------q~g~~vpa~~~~~---~-- 697 (888)
+...+.+|++|++.+|++++|.|||||||||+||+++++.... +.-.|||+...-+ +
T Consensus 11 g~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv~ 90 (232)
T d2awna2 11 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVA 90 (232)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECSSCCC-------
T ss_pred CCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHCEEEEECCCCCCCCCHHHH
T ss_conf 99999811177886998999998999829999999965878888889999997788864443222343342026433378
Q ss_pred -------------------HHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHH-HCCCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf -------------------7999998649800342051404899999999998-38999399980999999945499999
Q 002722 698 -------------------VRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLA 757 (888)
Q Consensus 698 -------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~sLvllDE~~~gtd~~~~~~i~ 757 (888)
.++.++.+++..+......+.++++++|...+.+ .+.+|.++|+|||++|+|+.....+
T Consensus 91 eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i- 169 (232)
T d2awna2 91 ENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM- 169 (232)
T ss_dssp --------------CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHH-
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHH-
T ss_conf 8978999875998899999999999757886566489656999999999999997039988997588878898899899-
Q ss_pred HHHHHHHHHCCCCEEEEEECCHHHH-HHHHHCCCCCCCCCCCCEEEEEEEEEE
Q ss_conf 9999999853997399990674698-985311233223345427689999999
Q 002722 758 WAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSAHI 809 (888)
Q Consensus 758 ~~~~~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~~~~ 809 (888)
+..+..+.++.|.+++++||+.+.+ .++++ ...+.++.+....
T Consensus 170 ~~~l~~l~~~~g~tii~vTHd~~~a~~~~dr---------i~vm~~G~iv~~G 213 (232)
T d2awna2 170 RIEISRLHKRLGRTMIYVTHDQVEAMTLADK---------IVVLDAGRVAQVG 213 (232)
T ss_dssp HHHHHHHHHHSCCEEEEEESCHHHHHHHCSE---------EEEEETTEEEEEE
T ss_pred HHHHHHHHHHCCCEEEEEECCHHHHHHHCCE---------EEEEECCEEEEEE
T ss_conf 9999999874298799994899999996999---------9999799999980
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=99.85 E-value=4.9e-21 Score=151.50 Aligned_cols=159 Identities=13% Similarity=0.051 Sum_probs=119.0
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHH------------------------HHCCCCCCCCCC--
Q ss_conf 842004875345799707999915998715798444477866------------------------211763346654--
Q 002722 641 WVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM------------------------AQVGSFVPCDRA-- 694 (888)
Q Consensus 641 ~~~~v~n~~~~~~~~~~~~~itGpN~~GKSTllr~i~~~~~l------------------------aq~g~~vpa~~~-- 694 (888)
+...+.++++|++.+|++++|.|||||||||++|+++++... .+.-.+||+..+
T Consensus 14 g~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~ 93 (240)
T d1g2912 14 GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALY 93 (240)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCC
T ss_pred CCEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCCCCCCEECCCCHHHC
T ss_conf 99999856066886998999999999809999999964878898989999998035664442453225512002212223
Q ss_pred -CCCHH---------------------HHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHH-HCCCCCEEEEECCCCCCCHH
Q ss_conf -52179---------------------99998649800342051404899999999998-38999399980999999945
Q 002722 695 -SISVR---------------------DCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTY 751 (888)
Q Consensus 695 -~~~~~---------------------d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~sLvllDE~~~gtd~~ 751 (888)
.+++. ..++..++..+......+.++++++|...|.+ .+.+|+++|+|||++|+|+.
T Consensus 94 ~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~ 173 (240)
T d1g2912 94 PHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAK 173 (240)
T ss_dssp TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHH
T ss_conf 10116676330687729998999999999998759966762993349999999999999982699889825887656989
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHCCCCCCCCCCCCEEEEEEEEEE
Q ss_conf 4999999999999853997399990674698-985311233223345427689999999
Q 002722 752 DGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSAHI 809 (888)
Q Consensus 752 ~~~~i~~~~~~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~~~~ 809 (888)
....+ +.++..+.++.|.+++++||+.+.+ .++++ ...+.++++....
T Consensus 174 ~~~~i-~~~l~~l~~~~g~tvi~vTHd~~~~~~~~dr---------v~vm~~G~iv~~G 222 (240)
T d1g2912 174 LRVRM-RAELKKLQRQLGVTTIYVTHDQVEAMTMGDR---------IAVMNRGVLQQVG 222 (240)
T ss_dssp HHHHH-HHHHHHHHHHHTCEEEEEESCHHHHHHHCSE---------EEEEETTEEEEEE
T ss_pred HHHHH-HHHHHHHHHCCCCEEEEECCCHHHHHHHCCE---------EEEEECCEEEEEC
T ss_conf 99899-9999999863698899995999999996999---------9999899999985
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=7.3e-21 Score=150.40 Aligned_cols=156 Identities=17% Similarity=0.138 Sum_probs=119.3
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHH-----------------------H-HHCCCCCCCCCC---CC
Q ss_conf 00487534579970799991599871579844447786-----------------------6-211763346654---52
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL-----------------------M-AQVGSFVPCDRA---SI 696 (888)
Q Consensus 644 ~v~n~~~~~~~~~~~~~itGpN~~GKSTllr~i~~~~~-----------------------l-aq~g~~vpa~~~---~~ 696 (888)
.+.+|++|++.+|++++|.|||||||||++|+++++.. + .++ .|||.+.. ..
T Consensus 19 ~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~rr~i-g~VfQ~~~l~~~~ 97 (240)
T d3dhwc1 19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQI-GMIFQHFNLLSSR 97 (240)
T ss_dssp EEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHHHHE-EECCSSCCCCTTS
T ss_pred EEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHHCCC-CCCCCCCCCCCCC
T ss_conf 986150578869979999899989888999987588636677328867685208755511554166-4302252227996
Q ss_pred CH---------------------HHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHH-HCCCCCEEEEECCCCCCCHHHHH
Q ss_conf 17---------------------999998649800342051404899999999998-38999399980999999945499
Q 002722 697 SV---------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGF 754 (888)
Q Consensus 697 ~~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~sLvllDE~~~gtd~~~~~ 754 (888)
++ +..++.++|..+........++++++|...|.+ .+.+|.++|+|||++|+|+....
T Consensus 98 tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~ 177 (240)
T d3dhwc1 98 TVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTR 177 (240)
T ss_dssp BHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHH
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCHHHCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHH
T ss_conf 49999999999849998999999999999769903554894349999998999864010589868744655658988856
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHCCCCCCCCCCCCEEEEEEEEEEE
Q ss_conf 9999999999853997399990674698-9853112332233454276899999997
Q 002722 755 GLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSAHID 810 (888)
Q Consensus 755 ~i~~~~~~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 810 (888)
.+ +.++..+.++.|.+++++||+.+.+ .++++ ...+.++++.....
T Consensus 178 ~i-~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dr---------i~vl~~G~iv~~G~ 224 (240)
T d3dhwc1 178 SI-LELLKDINRRLGLTILLITHEMDVVKRICDC---------VAVISNGELIEQDT 224 (240)
T ss_dssp HH-HHHHHHHHHHHCCEEEEEBSCHHHHHHHCSE---------EEEEETTEEEEEEE
T ss_pred HH-HHHHHHHHHCCCCEEEEECCCHHHHHHHCCE---------EEEEECCEEEEECC
T ss_conf 79-9999999864697899983899999986999---------99997999999879
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.84 E-value=2.3e-20 Score=147.16 Aligned_cols=157 Identities=16% Similarity=0.092 Sum_probs=114.0
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHH--------------------HHHCC-CCCCCCCC---CC
Q ss_conf 84200487534579970799991599871579844447786--------------------62117-63346654---52
Q 002722 641 WVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL--------------------MAQVG-SFVPCDRA---SI 696 (888)
Q Consensus 641 ~~~~v~n~~~~~~~~~~~~~itGpN~~GKSTllr~i~~~~~--------------------laq~g-~~vpa~~~---~~ 696 (888)
++..+.++++|++.+|++++|.|||||||||++|+++++.. .++.| .++|.... .+
T Consensus 15 g~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~l 94 (254)
T d1g6ha_ 15 GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEM 94 (254)
T ss_dssp TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGS
T ss_pred CCEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 99688712179988997999999999849999999977976887379999996640569999983387257764247887
Q ss_pred CHHHH----------------------------------HHHHCCCCHHHHHCCCHHHHHHHHHHHHHH-HCCCCCEEEE
Q ss_conf 17999----------------------------------998649800342051404899999999998-3899939998
Q 002722 697 SVRDC----------------------------------IFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIII 741 (888)
Q Consensus 697 ~~~d~----------------------------------i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~sLvll 741 (888)
++.+. ++..++..+......+.++++++|...+.+ .+.+|.++|+
T Consensus 95 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv~iAraL~~~P~llil 174 (254)
T d1g6ha_ 95 TVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVM 174 (254)
T ss_dssp BHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred EEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHCCCCHHHCCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf 42321430133303450456654213532899999999998761963020595356991888899999999759272324
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCH-HHHHHHHHCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 09999999454999999999999853997399990674-69898531123322334542768999999
Q 002722 742 DELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFH-ELTALAHENANEFNTKQMVGVANYHVSAH 808 (888)
Q Consensus 742 DE~~~gtd~~~~~~i~~~~~~~l~~~~~~~~l~~TH~~-~l~~~~~~~~~~~~~~~~~~v~~~~~~~~ 808 (888)
|||++|+|+.....+ +.++..+.+ .|++++++||+. ++.+++++ ...+.++++.+.
T Consensus 175 DEPt~gLD~~~~~~i-~~~i~~l~~-~g~til~vsHdl~~~~~~~Dr---------v~vm~~G~iv~~ 231 (254)
T d1g6ha_ 175 DEPIAGVAPGLAHDI-FNHVLELKA-KGITFLIIEHRLDIVLNYIDH---------LYVMFNGQIIAE 231 (254)
T ss_dssp ESTTTTCCHHHHHHH-HHHHHHHHH-TTCEEEEECSCCSTTGGGCSE---------EEEEETTEEEEE
T ss_pred CCCCCCCCHHHHHHH-HHHHHHHHH-CCCEEEEEECCHHHHHHHCCE---------EEEEECCEEEEE
T ss_conf 397656999999999-999999997-899899994769999986999---------999969989999
|
| >d1wb9a3 c.55.6.1 (A:117-269) DNA repair protein MutS, domain II {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: DNA repair protein MutS, domain II family: DNA repair protein MutS, domain II domain: DNA repair protein MutS, domain II species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=9.7e-20 Score=143.06 Aligned_cols=153 Identities=17% Similarity=0.153 Sum_probs=121.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEECCCCEEEEEEECCCHHHHHHHHHHHCCCCCEEEECCCC
Q ss_conf 97534100002478899996899996243369833999997458863999972492269989999870585479965997
Q 002722 120 GNLGSYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEA 199 (888)
Q Consensus 120 Gt~~~~ed~l~~~~~~~~~~yl~aI~~~~~~~~~~iGia~~D~stg~~~i~ef~D~~~~~~L~t~L~~~~P~EIii~~~~ 199 (888)
||++ |+.++ +.++||||+||... +..+|+||+|+|||+|.+.++.+ ...+.+.|.|++|+|||++++.
T Consensus 1 GT~~--d~~~L---~~~~nnyL~ai~~~----~~~~gla~~DiSTG~f~~~~~~~---~~~l~~~l~r~~P~Eil~~~~~ 68 (153)
T d1wb9a3 1 GTIS--DEALL---QERQDNLLAAIWQD----SKGFGYATLDISSGRFRLSEPAD---RETMAAELQRTNPAELLYAEDF 68 (153)
T ss_dssp TTCC--CGGGS---CTTSCCCEEEEEEC----SSCEEEEEECTTTCCEEEECCCS---HHHHHHHHHHHCCSEEEEETTC
T ss_pred CCCC--CCCCC---CCCCCCEEEEEEEC----CCEEEEEEEECCCCEEEEEECCC---HHHHHHHHHHCCCCCCCCCCCC
T ss_conf 9635--60314---79986289999977----98478999971455799997178---8889999982098650114542
Q ss_pred CCCHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 79801599999754148122232665455046999999862488888655467865088899999999999728678997
Q 002722 200 VKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVRGSVEPVRDLVSGFEIAPGALGALLSYAELLSDESNYGN 279 (888)
Q Consensus 200 ~~~~~~~~l~~~l~~~~~~~~~~~~~~F~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~al~aLl~Yl~~~~~~~~~~~ 279 (888)
.. .. .. .....++.++.+.|+...+.+.+.++++ ..++.+++....+.++.|+|+||.|++.++.....+.
T Consensus 69 ~~-~~------~~-~~~~~~~~~~~~~f~~~~~~~~l~~~f~-~~~l~~~g~~~~~~~~~A~gaLL~Yl~~tq~~~l~hl 139 (153)
T d1wb9a3 69 AE-MS------LI-EGRRGLRRRPLWEFEIDTARQQLNLQFG-TRDLVGFGVENAPRGLCAAGCLLQYAKDTQRTTLPHI 139 (153)
T ss_dssp CC-GG------GT-TTCSSEEEECGGGGCHHHHHHHHHHHHT-CSCSGGGTCTTCHHHHHHHHHHHHHHHHHHCSCCTTC
T ss_pred HH-HH------HH-HHCCCCCCCCCCCCCHHHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 12-56------77-5335553166521351779999998718-7765432111365799999999999999805462027
Q ss_pred CEEEEECCCCCCCC
Q ss_conf 01599425642001
Q 002722 280 YYIRKYSLDSYMRL 293 (888)
Q Consensus 280 ~~~~~~~~~~~m~i 293 (888)
-.+..+..+++|+|
T Consensus 140 ~~~~~~~~~~~m~L 153 (153)
T d1wb9a3 140 RSITMEREQDSIIM 153 (153)
T ss_dssp CCCEECCGGGBCEE
T ss_pred CCCEEECCCCEEEC
T ss_conf 98868787788889
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.83 E-value=2e-20 Score=147.50 Aligned_cols=156 Identities=13% Similarity=0.051 Sum_probs=118.0
Q ss_pred CCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHH------------------------HHCCCCCCCCCC---C
Q ss_conf 2004875345799707999915998715798444477866------------------------211763346654---5
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM------------------------AQVGSFVPCDRA---S 695 (888)
Q Consensus 643 ~~v~n~~~~~~~~~~~~~itGpN~~GKSTllr~i~~~~~l------------------------aq~g~~vpa~~~---~ 695 (888)
..+.+|++|++.+|++++|.|||||||||++|+++++... .++ .||++... .
T Consensus 18 ~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~i-g~vfQ~~~L~p~ 96 (242)
T d1oxxk2 18 VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKI-GMVFQTWALYPN 96 (242)
T ss_dssp EEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCE-EEEETTSCCCTT
T ss_pred EEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHHCCC-EEEECCCCCCCC
T ss_conf 8998040789879989999989998099999999758688874599999995137311153120451-477304334666
Q ss_pred CCHH---------------------HHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHH-HCCCCCEEEEECCCCCCCHHHH
Q ss_conf 2179---------------------99998649800342051404899999999998-3899939998099999994549
Q 002722 696 ISVR---------------------DCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDG 753 (888)
Q Consensus 696 ~~~~---------------------d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~sLvllDE~~~gtd~~~~ 753 (888)
+++. ..++..+|..+......+.++++++|...+.+ .+.+|.++|+|||++|+|+...
T Consensus 97 ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~ 176 (242)
T d1oxxk2 97 LTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMR 176 (242)
T ss_dssp SCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGH
T ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHCCHHHCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHH
T ss_conf 65777766556761379999999999998665917666489545999998589987577604661454478667998998
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHCCCCCCCCCCCCEEEEEEEEEE
Q ss_conf 99999999999853997399990674698-985311233223345427689999999
Q 002722 754 FGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSAHI 809 (888)
Q Consensus 754 ~~i~~~~~~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~~~~ 809 (888)
..+ +.++..+.++.|.+++++||+.+.+ .++++ ...+.++++....
T Consensus 177 ~~i-~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dr---------i~vm~~G~iv~~g 223 (242)
T d1oxxk2 177 DSA-RALVKEVQSRLGVTLLVVSHDPADIFAIADR---------VGVLVKGKLVQVG 223 (242)
T ss_dssp HHH-HHHHHHHHHHHCCEEEEEESCHHHHHHHCSE---------EEEEETTEEEEEE
T ss_pred HHH-HHHHHHHHHCCCCEEEEEECCHHHHHHHCCE---------EEEEECCEEEEEC
T ss_conf 899-8999999863598799997999999996999---------9999899999986
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=99.83 E-value=1.6e-20 Score=148.18 Aligned_cols=157 Identities=15% Similarity=0.100 Sum_probs=118.2
Q ss_pred CCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH------------------HCCCCCCCCCC---CCCHH--
Q ss_conf 20048753457997079999159987157984444778662------------------11763346654---52179--
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA------------------QVGSFVPCDRA---SISVR-- 699 (888)
Q Consensus 643 ~~v~n~~~~~~~~~~~~~itGpN~~GKSTllr~i~~~~~la------------------q~g~~vpa~~~---~~~~~-- 699 (888)
+++.+|++|++.+|++++|.|||||||||++|+++++.... +--.|||.... ..++.
T Consensus 13 ~~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~en 92 (229)
T d3d31a2 13 NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKN 92 (229)
T ss_dssp SCEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHH
T ss_pred CEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHCCEEECCCCCCCCCCCHHHH
T ss_conf 97884337898799899999899982999999996476888788999567346521657405615121111746657788
Q ss_pred ----------------HHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHH-HCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf ----------------99998649800342051404899999999998-3899939998099999994549999999999
Q 002722 700 ----------------DCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICE 762 (888)
Q Consensus 700 ----------------d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~sLvllDE~~~gtd~~~~~~i~~~~~~ 762 (888)
+.+...++..+......++++++++|...+.+ .+++|+++|+|||++|+|+.....+ +.++.
T Consensus 93 l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i-~~~l~ 171 (229)
T d3d31a2 93 LEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENA-REMLS 171 (229)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHH-HHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHCCHHHHHCCHHHCCHHHHCCHHHHHHHHCCCCCEEECCCCCCCCHHHHHHH-HHHHH
T ss_conf 88877640553899999999982565557589554799984014030434436771443478767998999999-99999
Q ss_pred HHHHCCCCEEEEEECCHHHH-HHHHHCCCCCCCCCCCCEEEEEEEEEE
Q ss_conf 99853997399990674698-985311233223345427689999999
Q 002722 763 HLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSAHI 809 (888)
Q Consensus 763 ~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~~~~ 809 (888)
.+.++.|.+++++||+.+.+ .++++ ...+.++++....
T Consensus 172 ~l~~~~g~tii~vtHd~~~~~~~~dr---------v~vm~~G~iv~~g 210 (229)
T d3d31a2 172 VLHKKNKLTVLHITHDQTEARIMADR---------IAVVMDGKLIQVG 210 (229)
T ss_dssp HHHHHTTCEEEEEESCHHHHHHHCSE---------EEEESSSCEEEEE
T ss_pred HHHHCCCCEEEEECCCHHHHHHHCCE---------EEEEECCEEEEEC
T ss_conf 99864796899974999999996999---------9999799999986
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=99.82 E-value=1.2e-19 Score=142.44 Aligned_cols=158 Identities=16% Similarity=0.089 Sum_probs=115.1
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHH----------------------------------HHCC
Q ss_conf 842004875345799707999915998715798444477866----------------------------------2117
Q 002722 641 WVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----------------------------------AQVG 686 (888)
Q Consensus 641 ~~~~v~n~~~~~~~~~~~~~itGpN~~GKSTllr~i~~~~~l----------------------------------aq~g 686 (888)
+...+.+|++|++..|++++|.|||||||||++|+++++... .++|
T Consensus 13 g~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig 92 (258)
T d1b0ua_ 13 GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLT 92 (258)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEE
T ss_pred CCEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCCCCHHHHHHHHCCEE
T ss_conf 99998815066886997999998999829999999974766789977999999336775200002351767999745448
Q ss_pred CCCCCCCC---CCCHH----------------------HHHHHHCCCCHHHH-HCCCHHHHHHHHHHHHHH-HCCCCCEE
Q ss_conf 63346654---52179----------------------99998649800342-051404899999999998-38999399
Q 002722 687 SFVPCDRA---SISVR----------------------DCIFARVGAGDCQL-RGVSTFMQEMLETASILK-GATDRSLI 739 (888)
Q Consensus 687 ~~vpa~~~---~~~~~----------------------d~i~~~~~~~d~~~-~~~s~f~~e~~~~~~il~-~~~~~sLv 739 (888)
+|++... .+.+. ..++.+++..+... ...+.++++++|...+.+ .+.+|.++
T Consensus 93 -~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iAraL~~~P~ll 171 (258)
T d1b0ua_ 93 -MVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVL 171 (258)
T ss_dssp -EECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEE
T ss_pred -EEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf -9983323141101021365657876299989999999999998299524430682205677888989999984399878
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHCCCCCCCCCCCCEEEEEEEEEEE
Q ss_conf 9809999999454999999999999853997399990674698-9853112332233454276899999997
Q 002722 740 IIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSAHID 810 (888)
Q Consensus 740 llDE~~~gtd~~~~~~i~~~~~~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 810 (888)
|+|||++|+|+.....+ +.++..+.+ .|.+++++||+.+.+ .++++ ...+.++++.....
T Consensus 172 ilDEPT~gLD~~~~~~i-~~ll~~l~~-~g~til~vtHdl~~~~~~adr---------i~vm~~G~iv~~g~ 232 (258)
T d1b0ua_ 172 LFDEPTSALDPELVGEV-LRIMQQLAE-EGKTMVVVTHEMGFARHVSSH---------VIFLHQGKIEEEGD 232 (258)
T ss_dssp EEESTTTTSCHHHHHHH-HHHHHHHHH-TTCCEEEECSCHHHHHHHCSE---------EEEEETTEEEEEEC
T ss_pred EECCCCCCCCHHHHHHH-HHHHHHHCC-CCCCEEEEECCHHHHHHHCCE---------EEEEECCEEEEECC
T ss_conf 85245556887888899-876554103-688338994899999986999---------99997999999849
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.81 E-value=1.3e-19 Score=142.28 Aligned_cols=155 Identities=19% Similarity=0.180 Sum_probs=114.1
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH------------------HCCCCCCCCCC---CCCHH---
Q ss_conf 0048753457997079999159987157984444778662------------------11763346654---52179---
Q 002722 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA------------------QVGSFVPCDRA---SISVR--- 699 (888)
Q Consensus 644 ~v~n~~~~~~~~~~~~~itGpN~~GKSTllr~i~~~~~la------------------q~g~~vpa~~~---~~~~~--- 699 (888)
|.. |++|+.+ +++++|.|||||||||++|+++++.... +--.|||+..+ .+++.
T Consensus 14 ~~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl 91 (240)
T d2onka1 14 FRL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNI 91 (240)
T ss_dssp EEE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHH
T ss_pred EEE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHH
T ss_conf 999-9999749-97999997999809999999973999896289999999886998992852252314435220155766
Q ss_pred ----------------HHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHH-HCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf ----------------99998649800342051404899999999998-3899939998099999994549999999999
Q 002722 700 ----------------DCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICE 762 (888)
Q Consensus 700 ----------------d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~sLvllDE~~~gtd~~~~~~i~~~~~~ 762 (888)
..++.++|..+......+.++++++|...+.+ .+.+|+++|+|||++|+|+.....+ +..+.
T Consensus 92 ~~~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i-~~~i~ 170 (240)
T d2onka1 92 AYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVL-MEELR 170 (240)
T ss_dssp HTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHH-HHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHH-HHHHH
T ss_conf 65323367788999999999863837566579444899998999998777516770675286555887999999-99999
Q ss_pred HHHHCCCCEEEEEECCHHH-HHHHHHCCCCCCCCCCCCEEEEEEEEEEE
Q ss_conf 9985399739999067469-89853112332233454276899999997
Q 002722 763 HLVEEIRAPTLFATHFHEL-TALAHENANEFNTKQMVGVANYHVSAHID 810 (888)
Q Consensus 763 ~l~~~~~~~~l~~TH~~~l-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 810 (888)
.+.++.+.+++++||+.+. ..++++ ...+.++++.....
T Consensus 171 ~l~~~~g~tvi~vtHd~~~~~~~adr---------i~vm~~G~ii~~G~ 210 (240)
T d2onka1 171 FVQREFDVPILHVTHDLIEAAMLADE---------VAVMLNGRIVEKGK 210 (240)
T ss_dssp HHHHHHTCCEEEEESCHHHHHHHCSE---------EEEEETTEEEEEEC
T ss_pred HHHHHCCCEEEEEECCHHHHHHHCCE---------EEEEECCEEEEEEC
T ss_conf 99874397699981899999996999---------99998999999906
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=1.6e-19 Score=141.63 Aligned_cols=155 Identities=13% Similarity=0.054 Sum_probs=112.0
Q ss_pred CCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHH-------------------HHHCCCCCCCCC---CC----
Q ss_conf 4200487534579970799991599871579844447786-------------------621176334665---45----
Q 002722 642 VNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL-------------------MAQVGSFVPCDR---AS---- 695 (888)
Q Consensus 642 ~~~v~n~~~~~~~~~~~~~itGpN~~GKSTllr~i~~~~~-------------------laq~g~~vpa~~---~~---- 695 (888)
..+..++++|++.+|++++|.|||||||||++++++++.. ++..+.+++... ..
T Consensus 11 ~~~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 90 (231)
T d1l7vc_ 11 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 90 (231)
T ss_dssp CTTTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCCCSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHH
T ss_pred CCCEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCCCHH
T ss_conf 57155588889948989999989998099999999488799559999999998699899986402451213577442098
Q ss_pred ------------CCHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHC--------CCCCEEEEECCCCCCCHHHHHH
Q ss_conf ------------21799999864980034205140489999999999838--------9993999809999999454999
Q 002722 696 ------------ISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGA--------TDRSLIIIDELGRGTSTYDGFG 755 (888)
Q Consensus 696 ------------~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~--------~~~sLvllDE~~~gtd~~~~~~ 755 (888)
-..++.+...++..+.+....+.++++++|...+.+.. .+|.++|+|||++|+|+.....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~ 170 (231)
T d1l7vc_ 91 HYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSA 170 (231)
T ss_dssp HHHHHHCSCTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHH
T ss_conf 87641001466899999999865987676768445699889999999999851713389988999718777789899999
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCHH-HHHHHHHCCCCCCCCCCCCEEEEEEEE
Q ss_conf 9999999998539973999906746-989853112332233454276899999
Q 002722 756 LAWAICEHLVEEIRAPTLFATHFHE-LTALAHENANEFNTKQMVGVANYHVSA 807 (888)
Q Consensus 756 i~~~~~~~l~~~~~~~~l~~TH~~~-l~~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (888)
+ +.++..+.+ .|++++++||+.+ +..++++ ...++++++.+
T Consensus 171 i-~~~i~~l~~-~g~tii~vtHdl~~~~~~~dr---------i~vl~~G~iv~ 212 (231)
T d1l7vc_ 171 L-DKILSALCQ-QGLAIVMSSHDLNHTLRHAHR---------AWLLKGGKMLA 212 (231)
T ss_dssp H-HHHHHHHHH-TTCEEEECCCCHHHHHHHCSB---------CCBEETTEECC
T ss_pred H-HHHHHHHHH-CCCEEEEEECCHHHHHHHCCE---------EEEEECCEEEE
T ss_conf 9-999999986-799999996779999997999---------99997998999
|
| >d1ewqa3 c.55.6.1 (A:121-266) DNA repair protein MutS, domain II {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: DNA repair protein MutS, domain II family: DNA repair protein MutS, domain II domain: DNA repair protein MutS, domain II species: Thermus aquaticus [TaxId: 271]
Probab=99.78 E-value=4.3e-18 Score=132.28 Aligned_cols=143 Identities=25% Similarity=0.313 Sum_probs=99.3
Q ss_pred CCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEECCCCEEEEEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCCHH
Q ss_conf 10000247889999689999624336983399999745886399997249226998999987058547996599779801
Q 002722 125 YEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSE 204 (888)
Q Consensus 125 ~ed~l~~~~~~~~~~yl~aI~~~~~~~~~~iGia~~D~stg~~~i~ef~D~~~~~~L~t~L~~~~P~EIii~~~~~~~~~ 204 (888)
.||.|+ .++||||+||+.. ..+|+||+|+|||+|.+.++.+ ...+.+.|.|++|+|||++++.. .
T Consensus 2 ~ee~Ll----~~~nNyLaai~~~-----~~~giA~~DiSTGef~~~~~~~---~~~l~~~l~r~~P~Eil~~~~~~---~ 66 (146)
T d1ewqa3 2 LQESLL----PREANYLAAIATG-----DGWGLAFLDVSTGEFKGTVLKS---KSALYDELFRHRPAEVLLAPELL---E 66 (146)
T ss_dssp CCGGGS----CSSCCCEEEEEES-----SSEEEEEEETTTTEEEEEEESS---HHHHHHHHHHHCCSEEEECHHHH---H
T ss_pred CCCCCC----CCCCCEEEEEEEC-----CCEEEEEEECCCCEEEEEEECC---HHHHHHHHHCCCCCEEEECCCCC---C
T ss_conf 654436----6767479999978-----9768999986688189998146---66689999717984898774224---2
Q ss_pred HHHHHHHHH-HCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEE
Q ss_conf 599999754-1481222326654550469999998624888886554678650888999999999997286789970159
Q 002722 205 CKTLRDALT-RCGVMLTERKKTEFKTRDLVQDLDRLVRGSVEPVRDLVSGFEIAPGALGALLSYAELLSDESNYGNYYIR 283 (888)
Q Consensus 205 ~~~l~~~l~-~~~~~~~~~~~~~F~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~al~aLl~Yl~~~~~~~~~~~~~~~ 283 (888)
.......+. ....... ...+ ..++. ....+..|+|+++.|++.++.. ..+...+.
T Consensus 67 ~~~~~~~~~~~~~~~~~---~~~~-------------------~~~~~-~~~~~~~a~gall~Yl~~tq~~-~lhl~~~~ 122 (146)
T d1ewqa3 67 NGAFLDEFRKRFPVMLS---EAPF-------------------EPEGE-GPLALRRARGALLAYAQRTQGG-ALSLQPFR 122 (146)
T ss_dssp CHHHHHHHHHHCCSEEE---CCCC-------------------CCCSS-SCHHHHHHHHHHHHHHHHHHTS-CCCCCCCE
T ss_pred CHHHHHHHHHHHHHHHC---CCCC-------------------CCCCC-CCHHHHHHHHHHHHHHHHHCCC-CCCCCCCE
T ss_conf 25679999875433210---0113-------------------65665-4388999999999999984679-87889988
Q ss_pred EECCCCCCCCCHHHHHHHCCCCC
Q ss_conf 94256420014888976004236
Q 002722 284 KYSLDSYMRLDSAAMRALNVLES 306 (888)
Q Consensus 284 ~~~~~~~m~iD~~Tl~~LEI~~~ 306 (888)
.+..+++|.||.+|++||||+++
T Consensus 123 ~~~~~~~l~iD~~T~rnLEL~~t 145 (146)
T d1ewqa3 123 FYDPGAFMRLPEATLRALEVFEP 145 (146)
T ss_dssp ECCGGGSCBCCHHHHHHTTSSSC
T ss_pred EECCCCEEEECHHHHHHHCCCCC
T ss_conf 98899989868889987477778
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=1.4e-18 Score=135.44 Aligned_cols=172 Identities=11% Similarity=0.053 Sum_probs=112.3
Q ss_pred CEEEECCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHH--------------------HHH
Q ss_conf 189985767606512584200487534579970799991599871579844447786--------------------621
Q 002722 625 DIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL--------------------MAQ 684 (888)
Q Consensus 625 ~l~i~~~rhp~~e~~~~~~~v~n~~~~~~~~~~~~~itGpN~~GKSTllr~i~~~~~--------------------laq 684 (888)
.+++++...-.-. ..+.++.++++|++.+|++++|+|||||||||+++.+.++.. +.+
T Consensus 11 ~I~~~nvsf~Y~~--~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 88 (251)
T d1jj7a_ 11 LVQFQDVSFAYPN--RPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHR 88 (251)
T ss_dssp CEEEEEEEECCTT--STTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred EEEEEEEEEECCC--CCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHHHH
T ss_conf 6999998998899--99997674438998499899999999984999999986143787689988998531101378887
Q ss_pred CCCCCCCCCCC--CCHHHHHH-------------------------HHC--CCCHHHHHCCCHHHHHHHHHHHHHH-HCC
Q ss_conf 17633466545--21799999-------------------------864--9800342051404899999999998-389
Q 002722 685 VGSFVPCDRAS--ISVRDCIF-------------------------ARV--GAGDCQLRGVSTFMQEMLETASILK-GAT 734 (888)
Q Consensus 685 ~g~~vpa~~~~--~~~~d~i~-------------------------~~~--~~~d~~~~~~s~f~~e~~~~~~il~-~~~ 734 (888)
.-++||.+..- -++.+.+. ..+ +....+..+-+.++++++|...+.+ .+.
T Consensus 89 ~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~ 168 (251)
T d1jj7a_ 89 QVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIR 168 (251)
T ss_dssp HEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTT
T ss_pred HHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEECCCC
T ss_conf 76540456500276346554542101302788999999998999998561211136751676689547048998604456
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 99399980999999945499999999999985399739999067469898531123322334542768999999
Q 002722 735 DRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAH 808 (888)
Q Consensus 735 ~~sLvllDE~~~gtd~~~~~~i~~~~~~~l~~~~~~~~l~~TH~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~ 808 (888)
+|+++|+|||++++|+.....+ ...+..+.+..+.+++++||+.+..+.+|+ ...++++++...
T Consensus 169 ~p~ililDEpTs~LD~~~~~~i-~~~l~~l~~~~~~Tvi~itH~l~~~~~aDr---------I~vl~~G~iv~~ 232 (251)
T d1jj7a_ 169 KPCVLILDDATSALDANSQLQV-EQLLYESPERYSRSVLLITQHLSLVEQADH---------ILFLEGGAIREG 232 (251)
T ss_dssp CCSEEEEESTTTTCCHHHHHHH-HHHHHTCGGGGGCEEEEECSCHHHHHTCSE---------EEEEETTEEEEE
T ss_pred CCCEEEECCCCCCCCHHHHHHH-HHHHHHHHHHCCCEEEEEECCHHHHHHCCE---------EEEEECCEEEEE
T ss_conf 8707871675765685368999-999999765069899999597999985999---------999989999998
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=2.9e-18 Score=133.45 Aligned_cols=156 Identities=14% Similarity=0.083 Sum_probs=105.7
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHH--------------------HHHCCCCCCCCCC--CCCH
Q ss_conf 84200487534579970799991599871579844447786--------------------6211763346654--5217
Q 002722 641 WVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL--------------------MAQVGSFVPCDRA--SISV 698 (888)
Q Consensus 641 ~~~~v~n~~~~~~~~~~~~~itGpN~~GKSTllr~i~~~~~--------------------laq~g~~vpa~~~--~~~~ 698 (888)
+..++.++++|++.+|+.++|+|||||||||+++.+.++.. +.+.-+|||++.. .-++
T Consensus 14 ~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti 93 (241)
T d2pmka1 14 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSI 93 (241)
T ss_dssp TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBH
T ss_pred CCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEEEEEECCCCCCCCCC
T ss_conf 99603742489984999999999999989999999973578888899999999440024655352889824465578400
Q ss_pred HHHH---------------HHHCCCCH-----------HHHHCCCHHHHHHHHHHHHHH-HCCCCCEEEEECCCCCCCHH
Q ss_conf 9999---------------98649800-----------342051404899999999998-38999399980999999945
Q 002722 699 RDCI---------------FARVGAGD-----------CQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTY 751 (888)
Q Consensus 699 ~d~i---------------~~~~~~~d-----------~~~~~~s~f~~e~~~~~~il~-~~~~~sLvllDE~~~gtd~~ 751 (888)
.+.| ....+..+ .+..+-+.++++++|...+.+ .+.+|+++|+|||++++|+.
T Consensus 94 ~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~ 173 (241)
T d2pmka1 94 IDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 173 (241)
T ss_dssp HHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHH
T ss_conf 03522357554388899999997557888763201344327878866988989875443444165135564776555989
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 499999999999985399739999067469898531123322334542768999999
Q 002722 752 DGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAH 808 (888)
Q Consensus 752 ~~~~i~~~~~~~l~~~~~~~~l~~TH~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~ 808 (888)
....+ ...+..+.+ ++++|++||..+....+++ ...+.++++...
T Consensus 174 ~~~~i-~~~l~~l~~--~~Tvi~itH~l~~~~~~D~---------i~vl~~G~Iv~~ 218 (241)
T d2pmka1 174 SEHVI-MRNMHKICK--GRTVIIIAHRLSTVKNADR---------IIVMEKGKIVEQ 218 (241)
T ss_dssp HHHHH-HHHHHHHHT--TSEEEEECSSGGGGTTSSE---------EEEEETTEEEEE
T ss_pred HHHHH-HHHHHHHHC--CCEEEEEECCHHHHHHCCE---------EEEEECCEEEEE
T ss_conf 99999-999999858--9989999788999984999---------999989999998
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.74 E-value=8.6e-18 Score=130.32 Aligned_cols=178 Identities=19% Similarity=0.105 Sum_probs=112.9
Q ss_pred CCCCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHH------------
Q ss_conf 77844899974189985767606512584200487534579970799991599871579844447786------------
Q 002722 614 TRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL------------ 681 (888)
Q Consensus 614 ~~P~~~~~~~~~l~i~~~rhp~~e~~~~~~~v~n~~~~~~~~~~~~~itGpN~~GKSTllr~i~~~~~------------ 681 (888)
-+|.-...+ .+++++...-. ..+..++.++++|++.+|++++|+|||||||||+++.++++..
T Consensus 7 ~~pl~~~~g--~I~~~nvsf~Y---~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~ 81 (255)
T d2hyda1 7 AQPIEIKQG--RIDIDHVSFQY---NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHN 81 (255)
T ss_dssp CCCCCCCSC--CEEEEEEEECS---CSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEE
T ss_pred CCCCCCCCC--EEEEEEEEEEE---CCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEE
T ss_conf 987777788--79999889995---9999760644389983998999988999809999999971278630001539987
Q ss_pred --------HHHCCCCCCCCCC--CCCHHHHH---------------HHHCCCCHH-----------HHHCCCHHHHHHHH
Q ss_conf --------6211763346654--52179999---------------986498003-----------42051404899999
Q 002722 682 --------MAQVGSFVPCDRA--SISVRDCI---------------FARVGAGDC-----------QLRGVSTFMQEMLE 725 (888)
Q Consensus 682 --------laq~g~~vpa~~~--~~~~~d~i---------------~~~~~~~d~-----------~~~~~s~f~~e~~~ 725 (888)
+.+.-.|||.+.. .-++.+.| ....+..+. +..+-+.++++++|
T Consensus 82 i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~Q 161 (255)
T d2hyda1 82 IKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQ 161 (255)
T ss_dssp GGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHH
T ss_pred CCCCCHHHHHHEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHH
T ss_conf 53078888634145651015689987999985158679999999999996979999736242010333888984999999
Q ss_pred HHHHHH-HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCEEEEE
Q ss_conf 999998-3899939998099999994549999999999998539973999906746989853112332233454276899
Q 002722 726 TASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYH 804 (888)
Q Consensus 726 ~~~il~-~~~~~sLvllDE~~~gtd~~~~~~i~~~~~~~l~~~~~~~~l~~TH~~~l~~~~~~~~~~~~~~~~~~v~~~~ 804 (888)
...+.+ .+.+|.++|+|||++++|+.....+ ...+..+.+ +.+++++||..+....+++ ...+.+++
T Consensus 162 Ri~iARal~~~p~ililDEpts~LD~~t~~~i-~~~l~~l~~--~~TvI~itH~~~~~~~~D~---------ii~l~~G~ 229 (255)
T d2hyda1 162 RLSIARIFLNNPPILILDEATSALDLESESII-QEALDVLSK--DRTTLIVAHRLSTITHADK---------IVVIENGH 229 (255)
T ss_dssp HHHHHHHHHHCCSEEEEESTTTTCCHHHHHHH-HHHHHHHTT--TSEEEEECSSGGGTTTCSE---------EEEEETTE
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHH-HHHHHHHHC--CCEEEEEECCHHHHHHCCE---------EEEEECCE
T ss_conf 99999998559989998376544797799999-999998753--8889999689999985999---------99998999
Q ss_pred EEEE
Q ss_conf 9999
Q 002722 805 VSAH 808 (888)
Q Consensus 805 ~~~~ 808 (888)
+...
T Consensus 230 iv~~ 233 (255)
T d2hyda1 230 IVET 233 (255)
T ss_dssp EEEE
T ss_pred EEEE
T ss_conf 9998
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.74 E-value=1.4e-18 Score=135.52 Aligned_cols=155 Identities=14% Similarity=0.027 Sum_probs=100.4
Q ss_pred CCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHH--------HHCCCCCCCCCCC--CCHHHH----------
Q ss_conf 42004875345799707999915998715798444477866--------2117633466545--217999----------
Q 002722 642 VNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------AQVGSFVPCDRAS--ISVRDC---------- 701 (888)
Q Consensus 642 ~~~v~n~~~~~~~~~~~~~itGpN~~GKSTllr~i~~~~~l--------aq~g~~vpa~~~~--~~~~d~---------- 701 (888)
+.+|.+|++|++.+|++++|+|||||||||+++.++++... .++ .|+|....- -.+.+.
T Consensus 48 g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~i-~~v~Q~~~l~~~tv~eni~~~~~~~~~ 126 (281)
T d1r0wa_ 48 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRV-SFCSQFSWIMPGTIKENIIFGVSYDEY 126 (281)
T ss_dssp TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSCE-EEECSSCCCCSEEHHHHHTTTSCCCHH
T ss_pred CCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEE-EEEECCCCCCCCEEECCCCCCCCCCCH
T ss_conf 9767737599985999999998999829999999957974788289999999-998164302676032142033345605
Q ss_pred ----HHHHCCCCHH-----------HHHCCCHHHHHHHHHHHHHH-HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf ----9986498003-----------42051404899999999998-3899939998099999994549999999999998
Q 002722 702 ----IFARVGAGDC-----------QLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLV 765 (888)
Q Consensus 702 ----i~~~~~~~d~-----------~~~~~s~f~~e~~~~~~il~-~~~~~sLvllDE~~~gtd~~~~~~i~~~~~~~l~ 765 (888)
+.......+. +..+..+++++++|...+.+ .+.+|.++|+|||++++|+.....+...++..+.
T Consensus 127 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~ 206 (281)
T d1r0wa_ 127 RYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLM 206 (281)
T ss_dssp HHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCT
T ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 79999999776999984612332355554237799999999999999869635133385544898999999999998862
Q ss_pred HCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 5399739999067469898531123322334542768999999
Q 002722 766 EEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAH 808 (888)
Q Consensus 766 ~~~~~~~l~~TH~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~ 808 (888)
.+.+++++||..+....+|+ ...+.++++...
T Consensus 207 --~~~tvi~itH~~~~l~~aDr---------I~vl~~G~i~~~ 238 (281)
T d1r0wa_ 207 --ANKTRILVTSKMEHLRKADK---------ILILHQGSSYFY 238 (281)
T ss_dssp --TTSEEEEECSCHHHHHTCSE---------EEEEETTEEEEE
T ss_pred --CCCEEEEEECHHHHHHHCCE---------EEEEECCEEEEE
T ss_conf --89999999252899985999---------999989999998
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=99.73 E-value=1.4e-18 Score=135.51 Aligned_cols=143 Identities=16% Similarity=0.093 Sum_probs=99.3
Q ss_pred CCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHH--------------------HHHCCCCCCCCCC--CCCHH
Q ss_conf 4200487534579970799991599871579844447786--------------------6211763346654--52179
Q 002722 642 VNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL--------------------MAQVGSFVPCDRA--SISVR 699 (888)
Q Consensus 642 ~~~v~n~~~~~~~~~~~~~itGpN~~GKSTllr~i~~~~~--------------------laq~g~~vpa~~~--~~~~~ 699 (888)
...+.+|++|++.+|++++|.|||||||||+++.++++.. +.+.-+|||++.. .-++.
T Consensus 14 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~ 93 (242)
T d1mv5a_ 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIR 93 (242)
T ss_dssp SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHH
T ss_pred CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEEEECCCCCCCCCCHH
T ss_conf 98414225899859999999999999799999999996098987798899884424678887436797566545785345
Q ss_pred HHH----------------HHHCCCCH-----------HHHHCCCHHHHHHHHHHHHHH-HCCCCCEEEEECCCCCCCHH
Q ss_conf 999----------------98649800-----------342051404899999999998-38999399980999999945
Q 002722 700 DCI----------------FARVGAGD-----------CQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTY 751 (888)
Q Consensus 700 d~i----------------~~~~~~~d-----------~~~~~~s~f~~e~~~~~~il~-~~~~~sLvllDE~~~gtd~~ 751 (888)
+.+ ....+..+ .+..+-+.++++++|...+.+ .+.+|+++|+|||++++|+.
T Consensus 94 eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~ 173 (242)
T d1mv5a_ 94 ENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSE 173 (242)
T ss_dssp HHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSS
T ss_pred HHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHH
T ss_conf 43012445554235677899999755542037421015236878987999999999999985299899965886556988
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Q ss_conf 499999999999985399739999067469898531
Q 002722 752 DGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 752 ~~~~i~~~~~~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
....+ +..++.+.+ +++++++||+.+.+..+++
T Consensus 174 ~~~~i-~~~l~~l~~--~~Tvi~itH~l~~~~~~D~ 206 (242)
T d1mv5a_ 174 SESMV-QKALDSLMK--GRTTLVIAHRLSTIVDADK 206 (242)
T ss_dssp SCCHH-HHHHHHHHT--TSEEEEECCSHHHHHHCSE
T ss_pred HHHHH-HHHHHHHCC--CCEEEEEECCHHHHHHCCE
T ss_conf 99999-887888717--9989999787999984999
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.73 E-value=1e-17 Score=129.89 Aligned_cols=169 Identities=15% Similarity=0.037 Sum_probs=109.3
Q ss_pred CEEEECCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHH--------------------HHH
Q ss_conf 189985767606512584200487534579970799991599871579844447786--------------------621
Q 002722 625 DIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL--------------------MAQ 684 (888)
Q Consensus 625 ~l~i~~~rhp~~e~~~~~~~v~n~~~~~~~~~~~~~itGpN~~GKSTllr~i~~~~~--------------------laq 684 (888)
.+++++...-. .....++.++++|.+.+|++++|+|||||||||+++.++++.- +.+
T Consensus 13 ~I~~~nvsf~Y---~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 89 (253)
T d3b60a1 13 DLEFRNVTFTY---PGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN 89 (253)
T ss_dssp CEEEEEEEECS---SSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHH
T ss_pred EEEEEEEEEEE---CCCCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHH
T ss_conf 79999889992---999976353328998599999999999985999999986216888468987880121110665420
Q ss_pred CCCCCCCCCCC--CCHHHH----------------HHHHCCCCHH-----------HHHCCCHHHHHHHHHHHHHH-HCC
Q ss_conf 17633466545--217999----------------9986498003-----------42051404899999999998-389
Q 002722 685 VGSFVPCDRAS--ISVRDC----------------IFARVGAGDC-----------QLRGVSTFMQEMLETASILK-GAT 734 (888)
Q Consensus 685 ~g~~vpa~~~~--~~~~d~----------------i~~~~~~~d~-----------~~~~~s~f~~e~~~~~~il~-~~~ 734 (888)
...|||.+..- -.+.+. .....+..+. +..+-+.++++++|...+.+ .+.
T Consensus 90 ~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~ 169 (253)
T d3b60a1 90 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR 169 (253)
T ss_dssp TEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 68799502544786202433205722089999999999981799997355441014348889849999999999999954
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 99399980999999945499999999999985399739999067469898531123322334542768999999
Q 002722 735 DRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAH 808 (888)
Q Consensus 735 ~~sLvllDE~~~gtd~~~~~~i~~~~~~~l~~~~~~~~l~~TH~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~ 808 (888)
+|.++|+|||++++|+.....+ ...+..+.+ ++++|++||+.+....+++ ...+.++++...
T Consensus 170 ~p~ililDEpts~LD~~~~~~i-~~~l~~l~~--~~Tvi~itH~l~~~~~~D~---------v~vl~~G~Iv~~ 231 (253)
T d3b60a1 170 DSPILILDEATSALDTESERAI-QAALDELQK--NRTSLVIAHRLSTIEQADE---------IVVVEDGIIVER 231 (253)
T ss_dssp CCSEEEEETTTSSCCHHHHHHH-HHHHHHHHT--TSEEEEECSCGGGTTTCSE---------EEEEETTEEEEE
T ss_pred CCCEEEECCCCCCCCHHHHHHH-HHHHHHHCC--CCEEEEEECCHHHHHHCCE---------EEEEECCEEEEE
T ss_conf 9988995164445898899999-999987522--7889999887999985999---------999989999998
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.69 E-value=9.5e-17 Score=123.50 Aligned_cols=136 Identities=15% Similarity=0.126 Sum_probs=89.3
Q ss_pred CCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHH---------------HHHCCCCCCCCCC---CCCHHH----
Q ss_conf 200487534579970799991599871579844447786---------------6211763346654---521799----
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL---------------MAQVGSFVPCDRA---SISVRD---- 700 (888)
Q Consensus 643 ~~v~n~~~~~~~~~~~~~itGpN~~GKSTllr~i~~~~~---------------laq~g~~vpa~~~---~~~~~d---- 700 (888)
..|.++++|++++|++++|+|||||||||++|+++++.. +..--.|+|.... .+.+.+
T Consensus 14 ~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~~~~~~~~~t~~~~l~~ 93 (200)
T d1sgwa_ 14 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKA 93 (200)
T ss_dssp SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHH
T ss_pred CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHHCCCEEEEEECCCCCCCCCHHHHHHH
T ss_conf 92884208898599899999999971999999996620567788999989626736708999501357888289999999
Q ss_pred ---------------HHHHHCCCCHHHHHCCCHHHHHHHHHHHHHH-HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf ---------------9998649800342051404899999999998-389993999809999999454999999999999
Q 002722 701 ---------------CIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHL 764 (888)
Q Consensus 701 ---------------~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~sLvllDE~~~gtd~~~~~~i~~~~~~~l 764 (888)
..+..++..+ +....+.+++++++...+.+ .+.+|.++|+|||++|+|+.....+...+.+..
T Consensus 94 ~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~ 172 (200)
T d1sgwa_ 94 VASLYGVKVNKNEIMDALESVEVLD-LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEIL 172 (200)
T ss_dssp HHHHTTCCCCHHHHHHHHHHTTCCC-TTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHH
T ss_pred HHHHCCCCCCHHHHHHHHHHCCCCC-CCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 9975488637999999998748856-301268689718888999998864998999868620169999999999999998
Q ss_pred HHCCCCEEEEEECCHH
Q ss_conf 8539973999906746
Q 002722 765 VEEIRAPTLFATHFHE 780 (888)
Q Consensus 765 ~~~~~~~~l~~TH~~~ 780 (888)
.+ .+..++.++|+.+
T Consensus 173 ~~-~~~~ii~~~~~l~ 187 (200)
T d1sgwa_ 173 KE-KGIVIISSREELS 187 (200)
T ss_dssp HH-HSEEEEEESSCCT
T ss_pred HC-CCEEEEEEECHHH
T ss_conf 67-9999999916254
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=98.98 E-value=1.6e-10 Score=82.81 Aligned_cols=126 Identities=18% Similarity=0.187 Sum_probs=65.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC-----CCC--H--HH---HHHH-----HCCCCHHHHHC---CCH
Q ss_conf 999915998715798444477866211763346654-----521--7--99---9998-----64980034205---140
Q 002722 659 QIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRA-----SIS--V--RD---CIFA-----RVGAGDCQLRG---VST 718 (888)
Q Consensus 659 ~~itGpN~~GKSTllr~i~~~~~laq~g~~vpa~~~-----~~~--~--~d---~i~~-----~~~~~d~~~~~---~s~ 718 (888)
++||||||+||||++|.++...-....|.++..... ..+ + +. ..+. .....+..... ...
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFEE 82 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 99998999389999999981488886469987713288887653112336677788754113455443023037625665
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Q ss_conf 489999999999838999399980999999945499999999999985399739999067469898531
Q 002722 719 FMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 719 f~~e~~~~~~il~~~~~~sLvllDE~~~gtd~~~~~~i~~~~~~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
...+....+.......++.++++||++.. .........++.+.+.. .++++++++|......+++.
T Consensus 83 ~~~~~~~~~l~~~~~~~~~vlllDE~~~~--~~~~~~~~~~l~~~l~~-~~~~il~~~h~~~~~~~~~~ 148 (178)
T d1ye8a1 83 LAIPILERAYREAKKDRRKVIIIDEIGKM--ELFSKKFRDLVRQIMHD-PNVNVVATIPIRDVHPLVKE 148 (178)
T ss_dssp HHHHHHHHHHHHHHHCTTCEEEECCCSTT--GGGCHHHHHHHHHHHTC-TTSEEEEECCSSCCSHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCEEECCCCCC--CHHHHHHHHHHHHHHCC-CCCEEEEEECCHHHHHHHCE
T ss_conf 32013789999997409974230277731--00457999999987505-79789999744778986365
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.34 E-value=1.7e-06 Score=56.57 Aligned_cols=54 Identities=11% Similarity=0.121 Sum_probs=40.8
Q ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Q ss_conf 838999399980999999945499999999999985399739999067469898531
Q 002722 731 KGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 731 ~~~~~~sLvllDE~~~gtd~~~~~~i~~~~~~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
.....++++++|||-.+++|..-..+ ...++.... +.-++++||.+++.+.++.
T Consensus 237 ~~~~~~~~~~iDEpe~~Lhp~~~~~l-~~~l~~~~~--~~QviitTHsp~~~~~~d~ 290 (308)
T d1e69a_ 237 MEIKPSPFYVLDEVDSPLDDYNAERF-KRLLKENSK--HTQFIVITHNKIVMEAADL 290 (308)
T ss_dssp TTTSCCSEEEEESCCSSCCHHHHHHH-HHHHHHHTT--TSEEEEECCCTTGGGGCSE
T ss_pred HHHCCCCHHHHHHCCCCCCHHHHHHH-HHHHHHHCC--CCEEEEEECCHHHHHHCCC
T ss_conf 54226744554320335797899999-999998554--8879999898899973242
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.51 E-value=0.001 Score=38.42 Aligned_cols=127 Identities=13% Similarity=0.046 Sum_probs=64.2
Q ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHH--CCCCCCCCCCCCCHHHHHHHHC---CC------------------
Q ss_conf 579970799991599871579844447786621--1763346654521799999864---98------------------
Q 002722 652 IRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ--VGSFVPCDRASISVRDCIFARV---GA------------------ 708 (888)
Q Consensus 652 ~~~~~~~~~itGpN~~GKSTllr~i~~~~~laq--~g~~vpa~~~~~~~~d~i~~~~---~~------------------ 708 (888)
+...|++++|.|+.|+|||||+.+++......+ --+|+..+...-.+..++.+.. ..
T Consensus 31 G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~E~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (277)
T d1cr2a_ 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQ 110 (277)
T ss_dssp SBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHHHHHHHTSHHHH
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHH
T ss_conf 97898089999479997999999999726553366345764011113577699998645871010122222145677888
Q ss_pred -------CHHH---HHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC---C----HHHHHHHHHHHHHHHHHCCCCE
Q ss_conf -------0034---205140489999999999838999399980999999---9----4549999999999998539973
Q 002722 709 -------GDCQ---LRGVSTFMQEMLETASILKGATDRSLIIIDELGRGT---S----TYDGFGLAWAICEHLVEEIRAP 771 (888)
Q Consensus 709 -------~d~~---~~~~s~f~~e~~~~~~il~~~~~~sLvllDE~~~gt---d----~~~~~~i~~~~~~~l~~~~~~~ 771 (888)
.+.+ ....+....++...........++.+|++|=+..-. . ...-..+ ..-+..++.+.+|+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~-~~~l~~lA~~~~i~ 189 (277)
T d1cr2a_ 111 WFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNL-MTKLKGFAKSTGVV 189 (277)
T ss_dssp HHHHHHSSSCEEEECCC-CCCHHHHHHHHHHHHHTTCCSEEEEEEEEC----------CHHHHHH-HHHHHHHHHHHCCE
T ss_pred HHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHH-HHHHHHHHHHCCCC
T ss_conf 98874035214662143310689999986543213676259970542120346544306778999-99999976501655
Q ss_pred EEEEECCH
Q ss_conf 99990674
Q 002722 772 TLFATHFH 779 (888)
Q Consensus 772 ~l~~TH~~ 779 (888)
+++++|..
T Consensus 190 vi~~~q~~ 197 (277)
T d1cr2a_ 190 LVVICHLK 197 (277)
T ss_dssp EEEEEECC
T ss_pred CEEECCCC
T ss_conf 20310356
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.24 E-value=0.0024 Score=36.00 Aligned_cols=123 Identities=15% Similarity=0.195 Sum_probs=59.0
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHH--CCC---------CCCCCCCCCCHHHHHHHH---CCCCH------H---
Q ss_conf 970799991599871579844447786621--176---------334665452179999986---49800------3---
Q 002722 655 KSWFQIITGPNMGGKSTFIRQVGVNILMAQ--VGS---------FVPCDRASISVRDCIFAR---VGAGD------C--- 711 (888)
Q Consensus 655 ~~~~~~itGpN~~GKSTllr~i~~~~~laq--~g~---------~vpa~~~~~~~~d~i~~~---~~~~d------~--- 711 (888)
.|.+.+|+|+.|+|||||+-++|..+-..+ .|. |+.++...-.+..++... .+..+ .
T Consensus 28 pg~~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~vl~~~~E~~~~~~~~Rl~~~~~~~~~~~~~~~~~~~~~ 107 (274)
T d1nlfa_ 28 AGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAVADGLLI 107 (274)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHHHHTTSCHHHHHHHHHHEEE
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCEE
T ss_conf 89589999289998999999999999769972111235787368985123499999999998623686665312333232
Q ss_pred --HHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCC-----CCHHHHHHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf --420514048999999999983899939998099999-----99454999999999999853997399990674
Q 002722 712 --QLRGVSTFMQEMLETASILKGATDRSLIIIDELGRG-----TSTYDGFGLAWAICEHLVEEIRAPTLFATHFH 779 (888)
Q Consensus 712 --~~~~~s~f~~e~~~~~~il~~~~~~sLvllDE~~~g-----td~~~~~~i~~~~~~~l~~~~~~~~l~~TH~~ 779 (888)
..... ...........+.....++.+|++|-+..- .+..+...+... +..++...+|+++++.|..
T Consensus 108 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~-l~~la~~~~~~vi~v~H~~ 180 (274)
T d1nlfa_ 108 QPLIGSL-PNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGR-MEAIAADTGCSIVFLHHAS 180 (274)
T ss_dssp CCCTTSC-CCTTSHHHHHHHHHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHH-HHHHHHHHCCEEEEEEEC-
T ss_pred CCCCCCC-CHHHHHHHHHHHHHHCCCCCEEECCCHHHHCCCCCCCHHHHHHHHHH-HHHHHHCCCCCEEHHHHCC
T ss_conf 1456742-03578999999887526765896281354226652322568999988-7777644797540131005
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=97.24 E-value=0.0036 Score=34.81 Aligned_cols=124 Identities=17% Similarity=0.169 Sum_probs=70.7
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHH-HHCCCCCCCCCCCCCHHHHHHHHCCCC-HHHHHCCCHHHHHHHHHHHHH
Q ss_conf 799707999915998715798444477866-211763346654521799999864980-034205140489999999999
Q 002722 653 RGKSWFQIITGPNMGGKSTFIRQVGVNILM-AQVGSFVPCDRASISVRDCIFARVGAG-DCQLRGVSTFMQEMLETASIL 730 (888)
Q Consensus 653 ~~~~~~~~itGpN~~GKSTllr~i~~~~~l-aq~g~~vpa~~~~~~~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il 730 (888)
+..|+++.|.||.|+||||+.-+++...-. .....|+..+...-+ ....++|.. |.+.--.....-+..+....+
T Consensus 51 i~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~~~~~---~~a~~~Gvd~d~v~~~~~~~~E~~~~~i~~l 127 (263)
T d1u94a1 51 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP---IYARKLGVDIDNLLCSQPDTGEQALEICDAL 127 (263)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCH---HHHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH---HHHHHHCCCHHHEEEECCCCHHHHHHHHHHH
T ss_conf 6673589980577747899999999998708987999865445489---9999839987997996289899999999999
Q ss_pred HHCCCCCEEEEECCCCCCCH-------HHH-----HHHHHHHH---HHHHHCCCCEEEEEECCH
Q ss_conf 83899939998099999994-------549-----99999999---999853997399990674
Q 002722 731 KGATDRSLIIIDELGRGTST-------YDG-----FGLAWAIC---EHLVEEIRAPTLFATHFH 779 (888)
Q Consensus 731 ~~~~~~sLvllDE~~~gtd~-------~~~-----~~i~~~~~---~~l~~~~~~~~l~~TH~~ 779 (888)
....+..|+++|-.+.-... .++ .......+ ..++...++.++++.|-.
T Consensus 128 ~~~~~~~liViDSi~al~~~~e~~~~~~~~~~~~~a~~l~~~~~~l~~~~~~~~~~vi~~NQv~ 191 (263)
T d1u94a1 128 ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 191 (263)
T ss_dssp HHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC--
T ss_pred HHCCCCCEEEEECCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEE
T ss_conf 8549998999988655666021026523104789999999999999876620581699987899
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.14 E-value=0.006 Score=33.38 Aligned_cols=126 Identities=17% Similarity=0.203 Sum_probs=72.2
Q ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHH-HHHHCCCCCCCCCCCCCHHHHHHHHCCCC-HHHHHCCCHHHHHHHHHHHH
Q ss_conf 57997079999159987157984444778-66211763346654521799999864980-03420514048999999999
Q 002722 652 IRGKSWFQIITGPNMGGKSTFIRQVGVNI-LMAQVGSFVPCDRASISVRDCIFARVGAG-DCQLRGVSTFMQEMLETASI 729 (888)
Q Consensus 652 ~~~~~~~~~itGpN~~GKSTllr~i~~~~-~laq~g~~vpa~~~~~~~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~i 729 (888)
+++.|++..+.||+++||||+.-+++... .....-.|+..+..- .. ..+.++|.. |++.--.....-+..+++..
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~~~-~~--e~a~~~GvD~d~il~~~~~~~E~~~~~~~~ 132 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHAL-DP--DYAKKLGVDTDSLLVSQPDTGEQALEIADM 132 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCC-CH--HHHHHHTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCC-CH--HHHHHHCCCHHHEEEECCCCHHHHHHHHHH
T ss_conf 866633699964887488999999999875489889999897667-99--999980998899589669989999999999
Q ss_pred HHHCCCCCEEEEECCCCCCCHHH------------HHHHHHHHHHH---HHHCCCCEEEEEECCHH
Q ss_conf 98389993999809999999454------------99999999999---98539973999906746
Q 002722 730 LKGATDRSLIIIDELGRGTSTYD------------GFGLAWAICEH---LVEEIRAPTLFATHFHE 780 (888)
Q Consensus 730 l~~~~~~sLvllDE~~~gtd~~~------------~~~i~~~~~~~---l~~~~~~~~l~~TH~~~ 780 (888)
+....+..|+++|-.+.-....+ ...+....+.. +....++.++++.|..+
T Consensus 133 l~~~~~~~liIiDSi~al~~~~E~e~~~~~~~~~~~a~~l~~~l~~l~~~~~~~~~~vi~~NQv~~ 198 (269)
T d1mo6a1 133 LIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLRD 198 (269)
T ss_dssp HHHTTCEEEEEEECSTTCCCHHHHC-------CCHHHHHHHHHHHHHHHHHHHHTCEEEEEECC--
T ss_pred HHHCCCCCEEEEECCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHEEEC
T ss_conf 985599878999330245608886054032328899999999999999987623716553320001
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=97.13 E-value=0.006 Score=33.36 Aligned_cols=124 Identities=17% Similarity=0.223 Sum_probs=71.2
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHH-HCCCCCCCCCCCCCHHHHHHHHCCCC-HHHHHCCCHHHHHHHHHHHHH
Q ss_conf 7997079999159987157984444778662-11763346654521799999864980-034205140489999999999
Q 002722 653 RGKSWFQIITGPNMGGKSTFIRQVGVNILMA-QVGSFVPCDRASISVRDCIFARVGAG-DCQLRGVSTFMQEMLETASIL 730 (888)
Q Consensus 653 ~~~~~~~~itGpN~~GKSTllr~i~~~~~la-q~g~~vpa~~~~~~~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il 730 (888)
++.|+++.+.||.++||||+.-+++...-.. -.-.|+..+.. +.+ .+..++|.. |++.--.....-+..++...+
T Consensus 54 ip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~~-~~~--~~a~~~Gvd~d~i~~~~~~~~E~~~~~~~~l 130 (268)
T d1xp8a1 54 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHA-LDP--VYARALGVNTDELLVSQPDNGEQALEIMELL 130 (268)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC-CCH--HHHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCC-CCH--HHHHHHCCCCHHEEEECCCCHHHHHHHHHHH
T ss_conf 6675478980587652279999999999707998999988765-899--9999828981237997489999999999999
Q ss_pred HHCCCCCEEEEECCCCCCC-------HHH-----HHHHHHHHHH---HHHHCCCCEEEEEECCH
Q ss_conf 8389993999809999999-------454-----9999999999---99853997399990674
Q 002722 731 KGATDRSLIIIDELGRGTS-------TYD-----GFGLAWAICE---HLVEEIRAPTLFATHFH 779 (888)
Q Consensus 731 ~~~~~~sLvllDE~~~gtd-------~~~-----~~~i~~~~~~---~l~~~~~~~~l~~TH~~ 779 (888)
....+..|+++|-.+.-.. ..+ ...+....+. .+....++.++++.|..
T Consensus 131 ~~~~~~~liIiDSi~al~~r~e~~~~~~~~~~~~~a~~l~~~lr~l~~~~~~~~~~vi~tNQv~ 194 (268)
T d1xp8a1 131 VRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVR 194 (268)
T ss_dssp HTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC-
T ss_pred HHCCCCCEEEEECCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE
T ss_conf 8658971999945454553888716534105779999999999997766643297699996786
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=97.11 E-value=0.0025 Score=35.79 Aligned_cols=106 Identities=17% Similarity=0.182 Sum_probs=58.2
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCC---CCCCCCCCCCCHHHHH--H-HHCCCCHHHHHCCCHHHHHHHHHH
Q ss_conf 997079999159987157984444778662117---6334665452179999--9-864980034205140489999999
Q 002722 654 GKSWFQIITGPNMGGKSTFIRQVGVNILMAQVG---SFVPCDRASISVRDCI--F-ARVGAGDCQLRGVSTFMQEMLETA 727 (888)
Q Consensus 654 ~~~~~~~itGpN~~GKSTllr~i~~~~~laq~g---~~vpa~~~~~~~~d~i--~-~~~~~~d~~~~~~s~f~~e~~~~~ 727 (888)
...+++++.||||+||||.+--+|... ...| ..+.++..+.+-.+.+ | .+++..-......+. ..+....+
T Consensus 8 ~~~~vi~lvGp~GvGKTTTiaKLA~~~--~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~-~~~~~~~~ 84 (207)
T d1ls1a2 8 KDRNLWFLVGLQGSGKTTTAAKLALYY--KGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGES-PESIRRRV 84 (207)
T ss_dssp CSSEEEEEECCTTTTHHHHHHHHHHHH--HHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCC-HHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH--HHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCH-HHHHHHHH
T ss_conf 998689998999998899999999999--977992799954434640888899999862886311124420-36788889
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 99983899939998099999994549999999999
Q 002722 728 SILKGATDRSLIIIDELGRGTSTYDGFGLAWAICE 762 (888)
Q Consensus 728 ~il~~~~~~sLvllDE~~~gtd~~~~~~i~~~~~~ 762 (888)
..+.......+||+|-+|+.-.-.....-...+.+
T Consensus 85 ~~~~~~~~~d~vlIDTaGr~~~d~~~~~el~~~~~ 119 (207)
T d1ls1a2 85 EEKARLEARDLILVDTAGRLQIDEPLMGELARLKE 119 (207)
T ss_dssp HHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 88876336764033454420000366889999986
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=97.11 E-value=0.0054 Score=33.63 Aligned_cols=103 Identities=15% Similarity=0.129 Sum_probs=51.5
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHCCCHHHHH-HHHHHHHHHH--
Q ss_conf 7079999159987157984444778662117633466545217999998649800342051404899-9999999983--
Q 002722 656 SWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQE-MLETASILKG-- 732 (888)
Q Consensus 656 ~~~~~itGpN~~GKSTllr~i~~~~~laq~g~~vpa~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e-~~~~~~il~~-- 732 (888)
.+-+++.||-|+|||++.|.+|.- .|+. ...+..-+ +.. .+.++ ...+..+...
T Consensus 42 ~~giLl~GppGtGKT~la~aia~~-----~~~~----~~~i~~~~-l~~-------------~~~g~~~~~l~~~f~~a~ 98 (247)
T d1ixza_ 42 PKGVLLVGPPGVGKTHLARAVAGE-----ARVP----FITASGSD-FVE-------------MFVGVGAARVRDLFETAK 98 (247)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH-----TTCC----EEEEEHHH-HHH-------------SCTTHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH-----CCCC----EEEEEHHH-HHH-------------CCCCHHHHHHHHHHHHHH
T ss_conf 864887668988835999999987-----3997----79978699-646-------------245389999999999999
Q ss_pred CCCCCEEEEECCC----------CCCCHHHHHHHHHHHHHHHHH---CCCCEEEEEECCHHHH
Q ss_conf 8999399980999----------999945499999999999985---3997399990674698
Q 002722 733 ATDRSLIIIDELG----------RGTSTYDGFGLAWAICEHLVE---EIRAPTLFATHFHELT 782 (888)
Q Consensus 733 ~~~~sLvllDE~~----------~gtd~~~~~~i~~~~~~~l~~---~~~~~~l~~TH~~~l~ 782 (888)
...|+++++||.- .+.+.. ...+...++..+.. ..+..++.+|.+.+..
T Consensus 99 ~~~p~Ii~iDeid~l~~~r~~~~~~~~~~-~~~~~~~ll~~~d~~~~~~~vivi~tTn~~~~l 160 (247)
T d1ixza_ 99 RHAPCIVFIDEIDAVGRKRGSGVGGGNDE-REQTLNQLLVEMDGFEKDTAIVVMAATNRPDIL 160 (247)
T ss_dssp TSSSEEEEEETHHHHHC---------CHH-HHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGS
T ss_pred HCCCEEEEEECHHHHCCCCCCCCCCCCHH-HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCC
T ss_conf 76997999977366474678998887589-999999999996387778998999807994006
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=97.06 E-value=0.0033 Score=35.04 Aligned_cols=112 Identities=15% Similarity=0.098 Sum_probs=60.7
Q ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHHHHH-HHCCCCCCCCCCCCCHHHHHHH---HCCCCHHHHHCCCHHHHHHHHH
Q ss_conf 45799707999915998715798444477866-2117633466545217999998---6498003420514048999999
Q 002722 651 LIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-AQVGSFVPCDRASISVRDCIFA---RVGAGDCQLRGVSTFMQEMLET 726 (888)
Q Consensus 651 ~~~~~~~~~~itGpN~~GKSTllr~i~~~~~l-aq~g~~vpa~~~~~~~~d~i~~---~~~~~d~~~~~~s~f~~e~~~~ 726 (888)
+......++++.||+|+||||.+=-+|-.... ..--..+.++..+++-++.+-+ +++..=......+.. ....+.
T Consensus 6 ~~~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~-~~~~~~ 84 (213)
T d1vmaa2 6 VPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADP-AAVAFD 84 (213)
T ss_dssp CCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCH-HHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCH-HHHHHH
T ss_conf 7999998999989999988999999999999779906999601334204678887764327641036777768-998788
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9999838999399980999999945499999999999
Q 002722 727 ASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEH 763 (888)
Q Consensus 727 ~~il~~~~~~sLvllDE~~~gtd~~~~~~i~~~~~~~ 763 (888)
........+..+||+|-+|+.-.-..-..-...+.+.
T Consensus 85 ~~~~~~~~~~d~ilIDTaGr~~~d~~~~~el~~~~~~ 121 (213)
T d1vmaa2 85 AVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRV 121 (213)
T ss_dssp HHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 7899987699989982455330168888998888766
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=97.03 E-value=0.0036 Score=34.79 Aligned_cols=108 Identities=17% Similarity=0.132 Sum_probs=59.1
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCC---CCCCCCCCCCCHHHHH--HHH-CCCCHHHHHCCCHHHHHHHHHH
Q ss_conf 997079999159987157984444778662117---6334665452179999--986-4980034205140489999999
Q 002722 654 GKSWFQIITGPNMGGKSTFIRQVGVNILMAQVG---SFVPCDRASISVRDCI--FAR-VGAGDCQLRGVSTFMQEMLETA 727 (888)
Q Consensus 654 ~~~~~~~itGpN~~GKSTllr~i~~~~~laq~g---~~vpa~~~~~~~~d~i--~~~-~~~~d~~~~~~s~f~~e~~~~~ 727 (888)
+.++++++.||+|+||||.+-=+|-. +...| ..+.++..+.+-.+++ |++ ++..-......+.. .....-.
T Consensus 4 ~~~~vi~lvGptGvGKTTTiaKLA~~--~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~-~~~~~~~ 80 (207)
T d1okkd2 4 PKGRVVLVVGVNGVGKTTTIAKLGRY--YQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDP-AALAYDA 80 (207)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEECCCCSSTTHHHHHHHHHHHHTCCEECCCTTCCH-HHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH--HHHCCCCEEEEEECCCCCCCHHHHHHCCCCCCCEEEECCCCCCH-HHHHHHH
T ss_conf 99779999899999889999999999--99779907999813666540266764054568238961677427-8899998
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9998389993999809999999454999999999999
Q 002722 728 SILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHL 764 (888)
Q Consensus 728 ~il~~~~~~sLvllDE~~~gtd~~~~~~i~~~~~~~l 764 (888)
.......+..+||+|-+|++-.-.+-..-...+.+..
T Consensus 81 ~~~~~~~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~ 117 (207)
T d1okkd2 81 VQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAI 117 (207)
T ss_dssp HHHHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999987999997175222311277888877777776
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.98 E-value=0.0025 Score=35.79 Aligned_cols=108 Identities=13% Similarity=0.034 Sum_probs=52.9
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 99707999915998715798444477866211763346654521799999864980034205140489999999999838
Q 002722 654 GKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGA 733 (888)
Q Consensus 654 ~~~~~~~itGpN~~GKSTllr~i~~~~~laq~g~~vpa~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~ 733 (888)
...+.++|.||.|+|||++.+.+|... |.. ...+...+ +.... .+. .....+...-....
T Consensus 39 ~~~~giLL~Gp~GtGKT~l~~ala~~~-----~~~----~~~~~~~~-l~~~~-------~~~---~~~~l~~~f~~A~~ 98 (265)
T d1r7ra3 39 TPSKGVLFYGPPGCGKTLLAKAIANEC-----QAN----FISIKGPE-LLTMW-------FGE---SEANVREIFDKARQ 98 (265)
T ss_dssp CCCCEEEEBCCTTSSHHHHHHHHHHHT-----TCE----EEEECHHH-HHTSC-------TTT---HHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHH-----CCC----EEEEEHHH-HHHCC-------CCC---HHHHHHHHHHHHHH
T ss_conf 988757887899876304778878771-----894----79988799-52531-------651---58999999999986
Q ss_pred CCCCEEEEECCCCCCC---------HHHHHHHHHHHHHHH---HHCCCCEEEEEECCHHH
Q ss_conf 9993999809999999---------454999999999999---85399739999067469
Q 002722 734 TDRSLIIIDELGRGTS---------TYDGFGLAWAICEHL---VEEIRAPTLFATHFHEL 781 (888)
Q Consensus 734 ~~~sLvllDE~~~gtd---------~~~~~~i~~~~~~~l---~~~~~~~~l~~TH~~~l 781 (888)
..|+++++||.-.-.. ......+...++..+ ....+..++.+|++.+.
T Consensus 99 ~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ 158 (265)
T d1r7ra3 99 AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 158 (265)
T ss_dssp TCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC------CCEEEECCBSCTT
T ss_pred CCCCCEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHH
T ss_conf 398435687546324557876788737999999999999628677799899991799222
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=96.98 E-value=0.0063 Score=33.22 Aligned_cols=113 Identities=12% Similarity=0.086 Sum_probs=58.9
Q ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHHHH-HHHCCCCCCCCCCCCCHHHHH--H-HHCCCCHHHHHCCCHHHHHHHHH
Q ss_conf 4579970799991599871579844447786-621176334665452179999--9-86498003420514048999999
Q 002722 651 LIRGKSWFQIITGPNMGGKSTFIRQVGVNIL-MAQVGSFVPCDRASISVRDCI--F-ARVGAGDCQLRGVSTFMQEMLET 726 (888)
Q Consensus 651 ~~~~~~~~~~itGpN~~GKSTllr~i~~~~~-laq~g~~vpa~~~~~~~~d~i--~-~~~~~~d~~~~~~s~f~~e~~~~ 726 (888)
++.....++++.||+|+||||.+-=+|-... ...--..+.++..+.+-++++ | .+++..=...........-+.+.
T Consensus 4 ~~~~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~ 83 (211)
T d2qy9a2 4 VEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDA 83 (211)
T ss_dssp CCSCTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
T ss_conf 78999979999899999989999999999997799479982321366612045554343388621135687799999999
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99998389993999809999999454999999999999
Q 002722 727 ASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHL 764 (888)
Q Consensus 727 ~~il~~~~~~sLvllDE~~~gtd~~~~~~i~~~~~~~l 764 (888)
.... ...+..+||+|-+||+-.......=...+.+..
T Consensus 84 ~~~a-~~~~~d~ilIDTaGr~~~d~~~~~el~~l~~~~ 120 (211)
T d2qy9a2 84 IQAA-KARNIDVLIADTAGRLQNKSHLMEELKKIVRVM 120 (211)
T ss_dssp HHHH-HHTTCSEEEECCCCCGGGHHHHHHHHHHHHHHH
T ss_pred HHHH-HHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 9999-876998899656887632077899999999998
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.93 E-value=0.0092 Score=32.15 Aligned_cols=125 Identities=13% Similarity=0.023 Sum_probs=65.0
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHH-HHCCCCCCCCCCCCCHHHHHHHHCCCCH-H-HHHC---------CCHHH
Q ss_conf 799707999915998715798444477866-2117633466545217999998649800-3-4205---------14048
Q 002722 653 RGKSWFQIITGPNMGGKSTFIRQVGVNILM-AQVGSFVPCDRASISVRDCIFARVGAGD-C-QLRG---------VSTFM 720 (888)
Q Consensus 653 ~~~~~~~~itGpN~~GKSTllr~i~~~~~l-aq~g~~vpa~~~~~~~~d~i~~~~~~~d-~-~~~~---------~s~f~ 720 (888)
.+.|.+++|.||.|+|||++..+++....- .....|+..+.....+.. ...+++... . ...+ .....
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLR-NAYSWGMDFEEMERQNLLKIVCAYPESAGL 101 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHH-HHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHH-HHHHCCCCHHHHHHCCCEEEEEEECCHHHH
T ss_conf 8698499999189999999999999999872324411212679999999-999829986998545861799730001017
Q ss_pred HHH-HHHHHHHHHCCCCCEEEEECCCCCC---CHHHHHHHHHHHHHHHHHCCCCEEEEEECCHH
Q ss_conf 999-9999999838999399980999999---94549999999999998539973999906746
Q 002722 721 QEM-LETASILKGATDRSLIIIDELGRGT---STYDGFGLAWAICEHLVEEIRAPTLFATHFHE 780 (888)
Q Consensus 721 ~e~-~~~~~il~~~~~~sLvllDE~~~gt---d~~~~~~i~~~~~~~l~~~~~~~~l~~TH~~~ 780 (888)
.+. ..+...+ ....+.++++|-...-. +...-......+...+.+ .+++++++.|-+.
T Consensus 102 ~~~~~~i~~~i-~~~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~i~~~~~~~ 163 (242)
T d1tf7a2 102 EDHLQIIKSEI-NDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQ-EEITGLFTNTSDQ 163 (242)
T ss_dssp HHHHHHHHHHH-HTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHH-TTCEEEEEEECSS
T ss_pred HHHHHHHHHHH-HHCCCCEEEEECCHHHHCCCCHHHHHHHHHHHHHHHHH-CCCEEEEEEEEEE
T ss_conf 99999999999-84088533220431430489999999999999999998-6983999985675
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.85 E-value=0.002 Score=36.45 Aligned_cols=56 Identities=5% Similarity=0.021 Sum_probs=42.6
Q ss_pred HHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Q ss_conf 9838999399980999999945499999999999985399739999067469898531
Q 002722 730 LKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 730 l~~~~~~sLvllDE~~~gtd~~~~~~i~~~~~~~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
+....+.+++++|||..++|+.....+ ..++..+.. .++-++++||.++++..++.
T Consensus 349 l~~~~~~pililDE~d~~Ld~~~~~~~-~~~l~~~~~-~~~Q~I~iTH~~~~~~~ad~ 404 (427)
T d1w1wa_ 349 INSYQPSPFFVLDEVDAALDITNVQRI-AAYIRRHRN-PDLQFIVISLKNTMFEKSDA 404 (427)
T ss_dssp HHTSSCCSEEEESSTTTTCCHHHHHHH-HHHHHHHCB-TTBEEEEECSCHHHHTTCSE
T ss_pred HHCCCCCCEEEEECCCCCCCHHHHHHH-HHHHHHHHC-CCCEEEEEECCHHHHHHCCC
T ss_conf 954799977999688777899999999-999999728-99889999587899973661
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.81 E-value=0.0061 Score=33.32 Aligned_cols=106 Identities=12% Similarity=0.093 Sum_probs=51.1
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHH--C
Q ss_conf 70799991599871579844447786621176334665452179999986498003420514048999999999983--8
Q 002722 656 SWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG--A 733 (888)
Q Consensus 656 ~~~~~itGpN~~GKSTllr~i~~~~~laq~g~~vpa~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~--~ 733 (888)
.+-+++.||-|+|||++.+.+|.- .|.++ .. +...+.. .|.+. ..+...+..+... .
T Consensus 40 ~~~vLL~GppGtGKT~la~alA~~-----~~~~~----~~----------i~~~~~~-~g~~~-~~~~~~i~~if~~A~~ 98 (246)
T d1d2na_ 40 LVSVLLEGPPHSGKTALAAKIAEE-----SNFPF----IK----------ICSPDKM-IGFSE-TAKCQAMKKIFDDAYK 98 (246)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH-----HTCSE----EE----------EECGGGC-TTCCH-HHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHC-----CCCCC----CC----------CCCCCCC-CCCCC-CCHHHHHHHHHHHHHH
T ss_conf 807998896999889999998620-----10023----33----------4565223-56542-1122444445655553
Q ss_pred CCCCEEEEECCC-----CCCCHHHHHHHHHHHHHHHHHC--CCCE--EEEEECCHHHH
Q ss_conf 999399980999-----9999454999999999999853--9973--99990674698
Q 002722 734 TDRSLIIIDELG-----RGTSTYDGFGLAWAICEHLVEE--IRAP--TLFATHFHELT 782 (888)
Q Consensus 734 ~~~sLvllDE~~-----~gtd~~~~~~i~~~~~~~l~~~--~~~~--~l~~TH~~~l~ 782 (888)
..|+++++||.- +...+.....+..+++..+... .+.. ++.+|...+..
T Consensus 99 ~~p~il~iDEid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~tTn~~~~l 156 (246)
T d1d2na_ 99 SQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVL 156 (246)
T ss_dssp SSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHH
T ss_pred CCCCEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHC
T ss_conf 2422233102566765134544124789999999860777654501455324883225
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.77 E-value=0.0078 Score=32.61 Aligned_cols=108 Identities=19% Similarity=0.171 Sum_probs=52.2
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 70799991599871579844447786621176334665452179999986498003420514048999999999983899
Q 002722 656 SWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATD 735 (888)
Q Consensus 656 ~~~~~itGpN~~GKSTllr~i~~~~~laq~g~~vpa~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~~~ 735 (888)
.+-++|.||.|+|||++.+.+|.-. |.. ...+..-+ +... ..|.+ ...+..+ .-......
T Consensus 38 ~~giLL~GppGtGKT~l~~ala~~~-----~~~----~~~i~~~~-l~~~-------~~g~~--~~~l~~~-f~~A~~~~ 97 (258)
T d1e32a2 38 PRGILLYGPPGTGKTLIARAVANET-----GAF----FFLINGPE-IMSK-------LAGES--ESNLRKA-FEEAEKNA 97 (258)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHT-----TCE----EEEECHHH-HTTS-------CTTHH--HHHHHHH-HHHHHHTC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHH-----CCE----EEEEECHH-HCCC-------CCCCH--HHHHHHH-HHHHHHCC
T ss_conf 8646876699888308999999874-----883----79997304-3025-------45617--8888999-99998649
Q ss_pred CCEEEEECCCCCCCHHH------HHHHHHHHHHHHHH---CCCCEEEEEECCHHHHH
Q ss_conf 93999809999999454------99999999999985---39973999906746989
Q 002722 736 RSLIIIDELGRGTSTYD------GFGLAWAICEHLVE---EIRAPTLFATHFHELTA 783 (888)
Q Consensus 736 ~sLvllDE~~~gtd~~~------~~~i~~~~~~~l~~---~~~~~~l~~TH~~~l~~ 783 (888)
|+++++||.-.-....+ ...+...++..+.. ..+..++.+|++.+...
T Consensus 98 p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvi~tTn~~~~ld 154 (258)
T d1e32a2 98 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 154 (258)
T ss_dssp SEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCSSCEEEEEEESCGGGSC
T ss_pred CEEEEEHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCC
T ss_conf 949985211132257887777068999877500110123468811797579931025
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.71 E-value=0.0043 Score=34.29 Aligned_cols=105 Identities=13% Similarity=0.094 Sum_probs=51.9
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCC---CCCCCCCCCHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 9707999915998715798444477866211763---3466545217999998649800342051404899999999998
Q 002722 655 KSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSF---VPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILK 731 (888)
Q Consensus 655 ~~~~~~itGpN~~GKSTllr~i~~~~~laq~g~~---vpa~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~ 731 (888)
..+.++++||.|+|||++.+.+|... |.. +.+.... + ..+ |.+. ..+.++ .-..
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~~-----~~~~~~i~~~~l~----~---~~~--------g~~~--~~l~~~-f~~A 100 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGEA-----KVPFFTISGSDFV----E---MFV--------GVGA--SRVRDM-FEQA 100 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH-----TCCEEEECSCSST----T---SCC--------CCCH--HHHHHH-HHHH
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHC-----CCCEEEEEHHHHH----H---CCH--------HHHH--HHHHHH-HHHH
T ss_conf 88867866899888228999999982-----9987998869942----6---001--------0789--999999-9999
Q ss_pred HCCCCCEEEEECCCC-----CCCH----HHHHHHHHHHHHHHHH---CCCCEEEEEECCHHHH
Q ss_conf 389993999809999-----9994----5499999999999985---3997399990674698
Q 002722 732 GATDRSLIIIDELGR-----GTST----YDGFGLAWAICEHLVE---EIRAPTLFATHFHELT 782 (888)
Q Consensus 732 ~~~~~sLvllDE~~~-----gtd~----~~~~~i~~~~~~~l~~---~~~~~~l~~TH~~~l~ 782 (888)
....|+++++||.-. +.+. .....+...++..+-. ..+..++.+|.+.+..
T Consensus 101 ~~~~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~v~vIatTn~~~~l 163 (256)
T d1lv7a_ 101 KKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVL 163 (256)
T ss_dssp HTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTS
T ss_pred HHCCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCC
T ss_conf 975998999977566575678988887489999999999995387777998999807993107
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.65 E-value=0.0028 Score=35.50 Aligned_cols=23 Identities=26% Similarity=0.190 Sum_probs=20.0
Q ss_pred EEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 07999915998715798444477
Q 002722 657 WFQIITGPNMGGKSTFIRQVGVN 679 (888)
Q Consensus 657 ~~~~itGpN~~GKSTllr~i~~~ 679 (888)
..++|+||.|+||||+.+.++--
T Consensus 34 ~~lll~Gp~G~GKTt~~~~la~~ 56 (252)
T d1sxje2 34 PHLLLYGPNGTGKKTRCMALLES 56 (252)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 85998899999889999999976
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.54 E-value=0.017 Score=30.34 Aligned_cols=125 Identities=14% Similarity=0.089 Sum_probs=62.6
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHH--HCCCCCCCCCCCCCHH----------HHHHHHCCC----CHHHHHCC
Q ss_conf 7997079999159987157984444778662--1176334665452179----------999986498----00342051
Q 002722 653 RGKSWFQIITGPNMGGKSTFIRQVGVNILMA--QVGSFVPCDRASISVR----------DCIFARVGA----GDCQLRGV 716 (888)
Q Consensus 653 ~~~~~~~~itGpN~~GKSTllr~i~~~~~la--q~g~~vpa~~~~~~~~----------d~i~~~~~~----~d~~~~~~ 716 (888)
.+.|.++.|.|+.|+|||+|.-+++...... ....|+..+...-... +........ ........
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQ 102 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSCC
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHCCHHHHHHCCCHHHH
T ss_conf 96983999994799999999999999999856887420126679999999999849984898871430244421033544
Q ss_pred CH----HHHHH-HHHHHHHHHCCCCCEEEEECCCCCCCH----HHHHHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 40----48999-999999983899939998099999994----54999999999999853997399990674
Q 002722 717 ST----FMQEM-LETASILKGATDRSLIIIDELGRGTST----YDGFGLAWAICEHLVEEIRAPTLFATHFH 779 (888)
Q Consensus 717 s~----f~~e~-~~~~~il~~~~~~sLvllDE~~~gtd~----~~~~~i~~~~~~~l~~~~~~~~l~~TH~~ 779 (888)
.. ...+. .++...+.. .++.++++|-...-.+. .........+...+.+ .++++++..|..
T Consensus 103 ~~~~~~~~~~l~~~l~~~i~~-~~~~~viiD~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 172 (242)
T d1tf7a1 103 EVVGGFDLSALIERINYAIQK-YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQ-IGATTVMTTERI 172 (242)
T ss_dssp SCCSSHHHHHHHHHHHHHHHH-HTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHH-HTCEEEEEEECS
T ss_pred HHHCCCCHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-CCCCEEEEECCC
T ss_conf 443024589999999999886-3122200207889987605726789999999999986-397168842102
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=96.35 E-value=0.022 Score=29.61 Aligned_cols=91 Identities=15% Similarity=0.143 Sum_probs=53.2
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHHCC---CCCCCCCCCCCHHHHHH---HHCCCCHHHHHCCCHHHHHHHHHHH
Q ss_conf 97079999159987157984444778662117---63346654521799999---8649800342051404899999999
Q 002722 655 KSWFQIITGPNMGGKSTFIRQVGVNILMAQVG---SFVPCDRASISVRDCIF---ARVGAGDCQLRGVSTFMQEMLETAS 728 (888)
Q Consensus 655 ~~~~~~itGpN~~GKSTllr~i~~~~~laq~g---~~vpa~~~~~~~~d~i~---~~~~~~d~~~~~~s~f~~e~~~~~~ 728 (888)
...++.+.||+|+||||.+=-+|-. +.+.| .++.++..+++-++.+- ..+|..=............+.+ +.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~--~~~~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~-a~ 87 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYF--YKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKR-GV 87 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHH--HHHTTCCEEEEECCCSSHHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHH-HH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH--HHHCCCCEEEEEEECCCCCHHHHHHHHCCCCCCCEEECCCCHHHHHHHHH-HH
T ss_conf 9989999899999989999999999--99779936999720235515678987401468422302441024478999-99
Q ss_pred HHHHCCCCCEEEEECCCCCC
Q ss_conf 99838999399980999999
Q 002722 729 ILKGATDRSLIIIDELGRGT 748 (888)
Q Consensus 729 il~~~~~~sLvllDE~~~gt 748 (888)
......+..+||+|-+|+.-
T Consensus 88 ~~~~~~~~d~IlIDTaGr~~ 107 (211)
T d1j8yf2 88 EKFLSEKMEIIIVDTAGRHG 107 (211)
T ss_dssp HHHHHTTCSEEEEECCCSCC
T ss_pred HHHHCCCCCEEEEECCCCCC
T ss_conf 87402677369985377676
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.24 E-value=0.00099 Score=38.47 Aligned_cols=24 Identities=29% Similarity=0.428 Sum_probs=20.8
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 079999159987157984444778
Q 002722 657 WFQIITGPNMGGKSTFIRQVGVNI 680 (888)
Q Consensus 657 ~~~~itGpN~~GKSTllr~i~~~~ 680 (888)
+.++||||+|+||||+++.++...
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l 25 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 699998899971999999999999
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.22 E-value=0.0054 Score=33.64 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=20.5
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 079999159987157984444778
Q 002722 657 WFQIITGPNMGGKSTFIRQVGVNI 680 (888)
Q Consensus 657 ~~~~itGpN~~GKSTllr~i~~~~ 680 (888)
..++|+||.|+||||+.+.+|--.
T Consensus 46 ~~lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 46 PHLLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 769997899974879999999998
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.17 E-value=0.025 Score=29.30 Aligned_cols=114 Identities=18% Similarity=0.085 Sum_probs=52.2
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHCCC-HHHHHHHHHHHHHHHC-
Q ss_conf 70799991599871579844447786621176334665452179999986498003420514-0489999999999838-
Q 002722 656 SWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVS-TFMQEMLETASILKGA- 733 (888)
Q Consensus 656 ~~~~~itGpN~~GKSTllr~i~~~~~laq~g~~vpa~~~~~~~~d~i~~~~~~~d~~~~~~s-~f~~e~~~~~~il~~~- 733 (888)
...+++.||+|.||||+.+.++--..........|... ......+... ...+-.....+ .-..+ ++..++..+
T Consensus 34 ~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~~~~~~~--~~~~~~i~~~-~~~~~~~~~~~~~~~i~--~ir~~~~~~~ 108 (239)
T d1njfa_ 34 HHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV--CDNCREIEQG-RFVDLIEIDAASRTKVE--DTRDLLDNVQ 108 (239)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHCTTCSCSSCCSC--SHHHHHHHHT-CCTTEEEEETTCSSSHH--HHHHHHHSCC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC--CHHHHHHHCC-CCCEEEEECCHHCCCHH--HHHHHHHHHH
T ss_conf 70598888998758999999999846855666675554--2479999747-98707996112007899--9999999997
Q ss_pred -----CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHH-CCCCEEEEEECCH
Q ss_conf -----999399980999999945499999999999985-3997399990674
Q 002722 734 -----TDRSLIIIDELGRGTSTYDGFGLAWAICEHLVE-EIRAPTLFATHFH 779 (888)
Q Consensus 734 -----~~~sLvllDE~~~gtd~~~~~~i~~~~~~~l~~-~~~~~~l~~TH~~ 779 (888)
.+..++++||.-. ++.... .+++..+-+ ..++.++++|+..
T Consensus 109 ~~~~~~~~kviiIde~d~-l~~~~q----~~Llk~lE~~~~~~~~il~tn~~ 155 (239)
T d1njfa_ 109 YAPARGRFKVYLIDEVHM-LSRHSF----NALLKTLEEPPEHVKFLLATTDP 155 (239)
T ss_dssp CSCSSSSSEEEEEETGGG-SCHHHH----HHHHHHHHSCCTTEEEEEEESCG
T ss_pred HCCCCCCCEEEEEECCCC-CCHHHH----HHHHHHHHCCCCCEEEEEECCCC
T ss_conf 465259987999978110-899999----99999985689886999973885
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=96.17 E-value=0.013 Score=31.16 Aligned_cols=103 Identities=14% Similarity=0.128 Sum_probs=59.1
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHH-HCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 079999159987157984444778662-1176334665452179999986498003420514048999999999983899
Q 002722 657 WFQIITGPNMGGKSTFIRQVGVNILMA-QVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATD 735 (888)
Q Consensus 657 ~~~~itGpN~~GKSTllr~i~~~~~la-q~g~~vpa~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~~~ 735 (888)
+.+.|.||.|+|||-|++.+|--..-. ....|+++....-..... +..+. +.+....+ ..
T Consensus 37 n~l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~------~~~~~~~~---~~ 97 (213)
T d1l8qa2 37 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEH----------LKKGT------INEFRNMY---KS 97 (213)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHH----------HHHTC------HHHHHHHH---HT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHH----------HHCCC------HHHHHHHH---HH
T ss_conf 8579988899839999999998744676504884437879999999----------87166------26678987---62
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 93999809999999454999999999999853997399990674
Q 002722 736 RSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFH 779 (888)
Q Consensus 736 ~sLvllDE~~~gtd~~~~~~i~~~~~~~l~~~~~~~~l~~TH~~ 779 (888)
..++++|++..-............++..+.+ .+..+++++..+
T Consensus 98 ~dll~iDDi~~i~~~~~~~~~lf~lin~~~~-~~~~iiits~~~ 140 (213)
T d1l8qa2 98 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYL-LEKQIILASDRH 140 (213)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHH-TTCEEEEEESSC
T ss_pred CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHH-CCCEEEEECCCC
T ss_conf 1301011265505865778899999998763-166389954875
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.16 E-value=0.0022 Score=36.16 Aligned_cols=104 Identities=21% Similarity=0.188 Sum_probs=50.2
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHCCCHHHHHHHHH-HHHHHHCCC
Q ss_conf 0799991599871579844447786621176334665452179999986498003420514048999999-999983899
Q 002722 657 WFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLET-ASILKGATD 735 (888)
Q Consensus 657 ~~~~itGpN~~GKSTllr~i~~~~~laq~g~~vpa~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~-~~il~~~~~ 735 (888)
.-++|+||-||||||+|+.+.. ++|.....+.+-|..=-.+....+.......-...+... ..+++ .+
T Consensus 167 ~nili~G~tgSGKTT~l~al~~---------~i~~~~rivtiEd~~El~l~~~~~~~~~~~~~~~~~~~ll~~~lR--~~ 235 (323)
T d1g6oa_ 167 KNVIVCGGTGSGKTTYIKSIME---------FIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLR--MR 235 (323)
T ss_dssp CCEEEEESTTSSHHHHHHHHGG---------GSCTTCCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTT--SC
T ss_pred CCEEEEEECCCCCHHHHHHHHH---------HCCCCCCEEECCCHHHHHCCCCCCCCEECCCCCHHHHHHHHHHHC--CC
T ss_conf 8889994035662578999865---------301456233113226551111245410014654249999999743--49
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCE-EEEEECCHHH
Q ss_conf 939998099999994549999999999998539973-9999067469
Q 002722 736 RSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAP-TLFATHFHEL 781 (888)
Q Consensus 736 ~sLvllDE~~~gtd~~~~~~i~~~~~~~l~~~~~~~-~l~~TH~~~l 781 (888)
|..+++.|.- | . + ++.+++.+.. |.. ++.+.|-...
T Consensus 236 pd~iivgEiR-~--~-e----a~~~l~a~~t--Gh~g~~tT~Ha~s~ 272 (323)
T d1g6oa_ 236 PDRIILGELR-S--S-E----AYDFYNVLCS--GHKGTLTTLHAGSS 272 (323)
T ss_dssp CSEEEESCCC-S--T-H----HHHHHHHHHT--TCSCEEEEECCSSH
T ss_pred CCCCCCCCCC-C--H-H----HHHHHHHHHH--CCCCEEEEECCCCH
T ss_conf 9854578667-4--6-5----9999999981--69857998787999
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.13 E-value=0.0015 Score=37.36 Aligned_cols=22 Identities=14% Similarity=0.098 Sum_probs=20.0
Q ss_pred EEEEEEECCCCCHHHHHHHHHH
Q ss_conf 0799991599871579844447
Q 002722 657 WFQIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 657 ~~~~itGpN~~GKSTllr~i~~ 678 (888)
.+++|||++|||||||++.++.
T Consensus 3 Pvi~itG~~GSGKTTL~~~L~~ 24 (170)
T d1np6a_ 3 PLLAFAAWSGTGKTTLLKKLIP 24 (170)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
T ss_conf 8899991899989999999999
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.07 E-value=0.027 Score=29.06 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=18.8
Q ss_pred EEEEEECCCCCHHHHHHHHHH
Q ss_conf 799991599871579844447
Q 002722 658 FQIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 658 ~~~itGpN~~GKSTllr~i~~ 678 (888)
+++|+||-|||||||++.+..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899991899839999999999
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.96 E-value=0.035 Score=28.37 Aligned_cols=124 Identities=10% Similarity=-0.039 Sum_probs=57.3
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCC--CCCCCCC--CCHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9707999915998715798444477866211763--3466545--21799999864980034205140489999999999
Q 002722 655 KSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSF--VPCDRAS--ISVRDCIFARVGAGDCQLRGVSTFMQEMLETASIL 730 (888)
Q Consensus 655 ~~~~~~itGpN~~GKSTllr~i~~~~~laq~g~~--vpa~~~~--~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il 730 (888)
....++|+||-|.||||++|.++-...-...-.+ +++.... ......+....+... ...+ .....-..+.....
T Consensus 42 ~~~~lll~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~ 119 (276)
T d1fnna2 42 HYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPF-PRRG-LSRDEFLALLVEHL 119 (276)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCC-CSSC-CCHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHH-HHHC-CCHHHHHHHHHHHH
T ss_conf 888168889899989999999999975446885787323001124666545677643345-5532-54357899999987
Q ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH--HCCCCEEEEEECCHHHH
Q ss_conf 83899939998099999994549999999999998--53997399990674698
Q 002722 731 KGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLV--EEIRAPTLFATHFHELT 782 (888)
Q Consensus 731 ~~~~~~sLvllDE~~~gtd~~~~~~i~~~~~~~l~--~~~~~~~l~~TH~~~l~ 782 (888)
.........++|+.-.-.+...... ..+..... ......+++++...+..
T Consensus 120 ~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~ 171 (276)
T d1fnna2 120 RERDLYMFLVLDDAFNLAPDILSTF--IRLGQEADKLGAFRIALVIVGHNDAVL 171 (276)
T ss_dssp HHTTCCEEEEEETGGGSCHHHHHHH--HHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHHH--HHHHHCCCCCCCCCEEEEECCCCHHHH
T ss_conf 5206543320368887535431068--888740443356524886258764544
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.95 E-value=0.0021 Score=36.29 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.3
Q ss_pred CEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 70799991599871579844447
Q 002722 656 SWFQIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 656 ~~~~~itGpN~~GKSTllr~i~~ 678 (888)
|++++|+||+|+||||+++.+..
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~ 24 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRE 24 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
T ss_conf 74999989999999999999984
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=95.92 E-value=0.0055 Score=33.61 Aligned_cols=120 Identities=17% Similarity=0.247 Sum_probs=62.5
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHCC---CHHHHHHHHHHHHHH
Q ss_conf 97079999159987157984444778662117633466545217999998649800342051---404899999999998
Q 002722 655 KSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGV---STFMQEMLETASILK 731 (888)
Q Consensus 655 ~~~~~~itGpN~~GKSTllr~i~~~~~laq~g~~vpa~~~~~~~~d~i~~~~~~~d~~~~~~---s~f~~e~~~~~~il~ 731 (888)
..+-.+|+||-|.|||++++-+|.-..-.+ ||..-....++. +. ...+..|. ..|-.-+..+..-+.
T Consensus 38 ~k~n~lLVG~~GvGKTalv~~la~ri~~~~----vp~~l~~~~i~~-----l~-~~~liag~~~~g~~e~r~~~i~~~~~ 107 (268)
T d1r6bx2 38 RKNNPLLVGESGVGKTAIAEGLAWRIVQGD----VPEVMADCTIYS-----LD-IGSLLAGTKYRGDFEKRFKALLKQLE 107 (268)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHHTC----SCGGGTTCEEEE-----CC-CC---CCCCCSSCHHHHHHHHHHHHS
T ss_pred CCCCCEEECCCCCCHHHHHHHHHHHHHHCC----CCCCCCCCEEEE-----EE-ECHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 668967988898867799999999998178----450003541278-----64-05675067630058999999999861
Q ss_pred HCCCCCEEEEECC----CCCCCHHHHHHHHHHHHH-HHHHCCCCEEEEEECCHHHHHHHHH
Q ss_conf 3899939998099----999994549999999999-9985399739999067469898531
Q 002722 732 GATDRSLIIIDEL----GRGTSTYDGFGLAWAICE-HLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 732 ~~~~~sLvllDE~----~~gtd~~~~~~i~~~~~~-~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
...+.++++||+ +.|.+..++..+ ..++. +|.. ..-.++.+|..-+..+....
T Consensus 108 -~~~~iIlfiDeih~l~~~g~~~g~~~d~-a~~Lkp~L~r-g~i~vIgatT~eey~~~~e~ 165 (268)
T d1r6bx2 108 -QDTNSILFIDEIHTIIGAGAASGGQVDA-ANLIKPLLSS-GKIRVIGSTTYQEFSNIFEK 165 (268)
T ss_dssp -SSSCEEEEETTTTTTTTSCCSSSCHHHH-HHHHSSCSSS-CCCEEEEEECHHHHHCCCCC
T ss_pred -CCCCCEEEECCHHHHHCCCCCCCCCCCH-HHHHHHHHHC-CCCEEEEECCHHHHHHHHHH
T ss_conf -2678468843369886277778864117-9876488747-98759995799999999861
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=95.91 E-value=0.0029 Score=35.43 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=22.9
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 99707999915998715798444477
Q 002722 654 GKSWFQIITGPNMGGKSTFIRQVGVN 679 (888)
Q Consensus 654 ~~~~~~~itGpN~~GKSTllr~i~~~ 679 (888)
..+++++|+||.||||||+.+.++-.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~ 29 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQ 29 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 98718999899998989999999998
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.90 E-value=0.0053 Score=33.71 Aligned_cols=105 Identities=14% Similarity=0.166 Sum_probs=54.6
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCC----CCCCCCCCHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 97079999159987157984444778662117633----46654521799999864980034205140489999999999
Q 002722 655 KSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFV----PCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASIL 730 (888)
Q Consensus 655 ~~~~~~itGpN~~GKSTllr~i~~~~~laq~g~~v----pa~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il 730 (888)
...+++++||-||||||.|..+.--. ...-...+ |.+...-+. ..+.. +...+ .+|...+ ..++
T Consensus 157 ~~GliLvtGpTGSGKSTTl~~~l~~~-~~~~~~i~tiEdPiE~~~~~~-----~q~~v--~~~~~-~~~~~~l---~~~l 224 (401)
T d1p9ra_ 157 PHGIILVTGPTGSGKSTTLYAGLQEL-NSSERNILTVEDPIEFDIDGI-----GQTQV--NPRVD-MTFARGL---RAIL 224 (401)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH-CCTTSCEEEEESSCCSCCSSS-----EEEEC--BGGGT-BCHHHHH---HHHG
T ss_pred HHCEEEEECCCCCCCCHHHHHHHHHH-CCCCCEEEEECCCCCCCCCCC-----CEEEE--CCCCC-CCHHHHH---HHHH
T ss_conf 10548987678777447799986662-578746999626743456788-----70265--58767-7999999---9998
Q ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHH
Q ss_conf 8389993999809999999454999999999999853997399990674698
Q 002722 731 KGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT 782 (888)
Q Consensus 731 ~~~~~~sLvllDE~~~gtd~~~~~~i~~~~~~~l~~~~~~~~l~~TH~~~l~ 782 (888)
+ .+|.++++.|+ .|+... .+.++. +. .|..++.+-|-....
T Consensus 225 R--~dPDvi~igEi---Rd~~ta----~~a~~a-a~-tGhlV~tTlHa~~a~ 265 (401)
T d1p9ra_ 225 R--QDPDVVMVGEI---RDLETA----QIAVQA-SL-TGHLVMSTLHTNTAV 265 (401)
T ss_dssp G--GCCSEEEESCC---CSHHHH----HHHHHH-HH-TTCEEEEEECCSSSH
T ss_pred H--HCCCEEEECCC---CCHHHH----HHHHHH-HH-CCCEEEEEECCCCHH
T ss_conf 4--13888984576---875999----999999-72-498589983367667
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.82 E-value=0.017 Score=30.47 Aligned_cols=117 Identities=16% Similarity=0.101 Sum_probs=56.7
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCHHH----HHCCCHHHHH-HHHHHHHH
Q ss_conf 707999915998715798444477866211763346654521799999864980034----2051404899-99999999
Q 002722 656 SWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQ----LRGVSTFMQE-MLETASIL 730 (888)
Q Consensus 656 ~~~~~itGpN~~GKSTllr~i~~~~~laq~g~~vpa~~~~~~~~d~i~~~~~~~d~~----~~~~s~f~~e-~~~~~~il 730 (888)
...+++.||.|+||||+.+.++-.....+.....++... .-...+..... .+.. ....+....+ ..++..-+
T Consensus 24 ~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~~~~~~~~--~~~~~i~~~~~-~~~~~~~~~~~~~~i~~~~ir~l~~~~ 100 (207)
T d1a5ta2 24 HHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHC--RGCQLMQAGTH-PDYYTLAPEKGKNTLGVDAVREVTEKL 100 (207)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCS--HHHHHHHHTCC-TTEEEECCCTTCSSBCHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC--CHHHHHHHCCC-CCCCHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 737988899987599999999982101012321223342--01556543034-311012343134533321146776532
Q ss_pred HH---CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHC-CCCEEEEEECCHH
Q ss_conf 83---89993999809999999454999999999999853-9973999906746
Q 002722 731 KG---ATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEE-IRAPTLFATHFHE 780 (888)
Q Consensus 731 ~~---~~~~sLvllDE~~~gtd~~~~~~i~~~~~~~l~~~-~~~~~l~~TH~~~ 780 (888)
.. ..++.++++||.-+-+. .+. .+++..+-+. .++.++++|++..
T Consensus 101 ~~~~~~~~~kviIide~d~l~~----~a~-n~Llk~lEep~~~~~fIl~t~~~~ 149 (207)
T d1a5ta2 101 NEHARLGGAKVVWVTDAALLTD----AAA-NALLKTLEEPPAETWFFLATREPE 149 (207)
T ss_dssp TSCCTTSSCEEEEESCGGGBCH----HHH-HHHHHHHTSCCTTEEEEEEESCGG
T ss_pred HHCCCCCCCCEEEECHHHHHHH----HHH-HHHHHHHHHHCCCCEEEEEECCHH
T ss_conf 1100357640477313442000----014-999999985011110455306865
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.78 E-value=0.0053 Score=33.72 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=19.4
Q ss_pred EEEEEECCCCCHHHHHHHHHHH
Q ss_conf 7999915998715798444477
Q 002722 658 FQIITGPNMGGKSTFIRQVGVN 679 (888)
Q Consensus 658 ~~~itGpN~~GKSTllr~i~~~ 679 (888)
.++++||.|+||||+.+.++--
T Consensus 37 ~lLl~Gp~G~GKttl~~~la~~ 58 (227)
T d1sxjc2 37 HLLFYGPPGTGKTSTIVALARE 58 (227)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 5999889987755899999998
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.60 E-value=0.0041 Score=34.43 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=21.2
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 970799991599871579844447
Q 002722 655 KSWFQIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 655 ~~~~~~itGpN~~GKSTllr~i~~ 678 (888)
.|++++|+||.||||||+.+.++.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~ 26 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALAN 26 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 985999988999988999999999
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.48 E-value=0.0065 Score=33.13 Aligned_cols=33 Identities=27% Similarity=0.365 Sum_probs=25.0
Q ss_pred CCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf 048753457997079999159987157984444
Q 002722 645 IPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVG 677 (888)
Q Consensus 645 v~n~~~~~~~~~~~~~itGpN~~GKSTllr~i~ 677 (888)
.|-+..+......++++.|+.||||||+.+.++
T Consensus 3 ~p~~~~~~~~~p~liil~G~pGsGKST~a~~l~ 35 (172)
T d1yj5a2 3 LPESSSLLSPNPEVVVAVGFPGAGKSTFIQEHL 35 (172)
T ss_dssp BSTTSCSSCSSCCEEEEECCTTSSHHHHHHHHT
T ss_pred CCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 898665579999899998999998999999999
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=95.41 E-value=0.00033 Score=41.58 Aligned_cols=30 Identities=23% Similarity=0.250 Sum_probs=24.3
Q ss_pred CCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 753457997079999159987157984444778
Q 002722 648 DCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI 680 (888)
Q Consensus 648 ~~~~~~~~~~~~~itGpN~~GKSTllr~i~~~~ 680 (888)
.+.|+ ..+.+|+||||+||||+|.+|..+.
T Consensus 19 ~i~f~---~~~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 19 TFDLD---ELVTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp EECHH---HHHHHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEECC---CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99749---9808998899998799999999996
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.27 E-value=0.0051 Score=33.83 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=18.7
Q ss_pred EEEEEEECCCCCHHHHHHHHHH
Q ss_conf 0799991599871579844447
Q 002722 657 WFQIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 657 ~~~~itGpN~~GKSTllr~i~~ 678 (888)
+++.|+|++|||||||++.+.-
T Consensus 2 kii~I~G~~gSGKTTli~~l~~ 23 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVA 23 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHH
T ss_conf 0999980999989999999999
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.18 E-value=0.0064 Score=33.19 Aligned_cols=24 Identities=25% Similarity=0.374 Sum_probs=21.2
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 707999915998715798444477
Q 002722 656 SWFQIITGPNMGGKSTFIRQVGVN 679 (888)
Q Consensus 656 ~~~~~itGpN~~GKSTllr~i~~~ 679 (888)
.++++|+||.||||||+.+.++-.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~ 26 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 859999899999989999999997
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.13 E-value=0.0062 Score=33.27 Aligned_cols=23 Identities=17% Similarity=0.024 Sum_probs=20.6
Q ss_pred CEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 70799991599871579844447
Q 002722 656 SWFQIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 656 ~~~~~itGpN~~GKSTllr~i~~ 678 (888)
.++++|+||.||||||+.+.++-
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~ 23 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMD 23 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
T ss_conf 98899989999898999999999
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.13 E-value=0.0062 Score=33.25 Aligned_cols=22 Identities=41% Similarity=0.489 Sum_probs=19.9
Q ss_pred EEEEEEECCCCCHHHHHHHHHH
Q ss_conf 0799991599871579844447
Q 002722 657 WFQIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 657 ~~~~itGpN~~GKSTllr~i~~ 678 (888)
++++|+||.|+||||+.+.++-
T Consensus 3 klI~i~G~~GsGKTTva~~L~~ 24 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAA 24 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 0899989999998999999999
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.03 E-value=0.0073 Score=32.81 Aligned_cols=22 Identities=27% Similarity=0.246 Sum_probs=18.7
Q ss_pred CEEEEEEECCCCCHHHHHHHHH
Q ss_conf 7079999159987157984444
Q 002722 656 SWFQIITGPNMGGKSTFIRQVG 677 (888)
Q Consensus 656 ~~~~~itGpN~~GKSTllr~i~ 677 (888)
.++++|+||.||||||+.+.+.
T Consensus 2 kklIii~G~pGsGKTTla~~L~ 23 (152)
T d1ly1a_ 2 KKIILTIGCPGSGKSTWAREFI 23 (152)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
T ss_conf 8799998999999999999999
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=95.00 E-value=0.074 Score=26.21 Aligned_cols=115 Identities=18% Similarity=0.014 Sum_probs=49.9
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH----CC---------CCHHHHHCCCHHH
Q ss_conf 9970799991599871579844447786621176334665452179999986----49---------8003420514048
Q 002722 654 GKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFAR----VG---------AGDCQLRGVSTFM 720 (888)
Q Consensus 654 ~~~~~~~itGpN~~GKSTllr~i~~~~~laq~g~~vpa~~~~~~~~d~i~~~----~~---------~~d~~~~~~s~f~ 720 (888)
...+..+|.+|-|+|||+.+-. .+.+.|..+---.-...+.+.+..+ .+ ........ ..++
T Consensus 6 ~~~~~~ll~apTGsGKT~~~~~-----~~~~~~~~vli~~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 79 (136)
T d1a1va1 6 QSFQVAHLHAPTGSGKSTKVPA-----AYAAQGYKVLVLNPSVAATLGFGAYMSKAHGVDPNIRTGVRTITTGSP-ITYS 79 (136)
T ss_dssp SSCEEEEEECCTTSCTTTHHHH-----HHHTTTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCEECCCCS-EEEE
T ss_pred CCCCEEEEEECCCCCHHHHHHH-----HHHHCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-EEEE
T ss_conf 6788899996887799999999-----999869939997676999999999999985202464300122113442-2788
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 99999999998389993999809999999454999999999999853997399990
Q 002722 721 QEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFAT 776 (888)
Q Consensus 721 ~e~~~~~~il~~~~~~sLvllDE~~~gtd~~~~~~i~~~~~~~l~~~~~~~~l~~T 776 (888)
..............+-+++|+||.-. .+......+ ..+++.+.......++..|
T Consensus 80 ~~~~~~~~~~~~~~~~~~vIiDE~H~-~~~~~~~~~-~~~l~~~~~~~~~~~l~~T 133 (136)
T d1a1va1 80 TYGKFLADGGCSGGAYDIIICDECHS-TDATSILGI-GTVLDQAETAGARLVVLAT 133 (136)
T ss_dssp EHHHHHHTTGGGGCCCSEEEEETTTC-CSHHHHHHH-HHHHHHTTTTTCSEEEEEE
T ss_pred EEEEECCCCCHHHHCCCEEEEECCCC-CCHHHHHHH-HHHHHHHHHCCCCCEEEEE
T ss_conf 64100023530241599999825553-588789999-9999999877997299992
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.97 E-value=0.0078 Score=32.61 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=21.1
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 9707999915998715798444477
Q 002722 655 KSWFQIITGPNMGGKSTFIRQVGVN 679 (888)
Q Consensus 655 ~~~~~~itGpN~~GKSTllr~i~~~ 679 (888)
.|.+++|.||.|+||||+++.+.-.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9809999999999999999999863
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=94.77 E-value=0.0072 Score=32.85 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=20.9
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 707999915998715798444477
Q 002722 656 SWFQIITGPNMGGKSTFIRQVGVN 679 (888)
Q Consensus 656 ~~~~~itGpN~~GKSTllr~i~~~ 679 (888)
.+.++|+||.|+||||+.+.++--
T Consensus 7 ~K~I~i~G~~GsGKTTla~~La~~ 30 (192)
T d1lw7a2 7 AKTVAILGGESSGKSVLVNKLAAV 30 (192)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 328999899999899999999998
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=94.73 E-value=0.011 Score=31.77 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=21.3
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 9970799991599871579844447
Q 002722 654 GKSWFQIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 654 ~~~~~~~itGpN~~GKSTllr~i~~ 678 (888)
+++-.++|+||.|+||||+.+.++-
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~ 27 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAA 27 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 9988899982899988999999999
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.65 E-value=0.05 Score=27.34 Aligned_cols=31 Identities=23% Similarity=0.351 Sum_probs=23.8
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 970799991599871579844447786621176
Q 002722 655 KSWFQIITGPNMGGKSTFIRQVGVNILMAQVGS 687 (888)
Q Consensus 655 ~~~~~~itGpN~~GKSTllr~i~~~~~laq~g~ 687 (888)
.|.+++|.||-|+||||..+.++. .+...|.
T Consensus 2 rG~lI~ieG~dGsGKsT~~~~L~~--~L~~~g~ 32 (209)
T d1nn5a_ 2 RGALIVLEGVDRAGKSTQSRKLVE--ALCAAGH 32 (209)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH--HHHHTTC
T ss_pred CEEEEEEECCCCCCHHHHHHHHHH--HHHHCCC
T ss_conf 805999989988899999999999--9987799
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=94.48 E-value=0.012 Score=31.36 Aligned_cols=32 Identities=28% Similarity=0.199 Sum_probs=23.4
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 0799991599871579844447786621176334
Q 002722 657 WFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVP 690 (888)
Q Consensus 657 ~~~~itGpN~~GKSTllr~i~~~~~laq~g~~vp 690 (888)
++++|+|+.|+||||..+.++.. +...|..++
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~--L~~~~~~~~ 33 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEI--LDNQGINNK 33 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH--HHTTTCCEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHH--HHHCCCCEE
T ss_conf 19999898998989999999999--987699889
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.44 E-value=0.014 Score=30.91 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=22.4
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 99707999915998715798444477
Q 002722 654 GKSWFQIITGPNMGGKSTFIRQVGVN 679 (888)
Q Consensus 654 ~~~~~~~itGpN~~GKSTllr~i~~~ 679 (888)
..|.++.|||+.||||||+-+.++-.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~ 29 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVT 29 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99769998899999999999999999
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.43 E-value=0.017 Score=30.37 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=19.9
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 707999915998715798444477
Q 002722 656 SWFQIITGPNMGGKSTFIRQVGVN 679 (888)
Q Consensus 656 ~~~~~itGpN~~GKSTllr~i~~~ 679 (888)
.-+++|+||.||||||+.+.++-.
T Consensus 22 ~~iIgI~G~~GSGKSTla~~L~~~ 45 (198)
T d1rz3a_ 22 RLVLGIDGLSRSGKTTLANQLSQT 45 (198)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 889997898878999999999998
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.40 E-value=0.015 Score=30.81 Aligned_cols=110 Identities=15% Similarity=0.108 Sum_probs=50.1
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCC---CCCCCCCCHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 97079999159987157984444778662117633---466545217999998649800342051404899999999998
Q 002722 655 KSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFV---PCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILK 731 (888)
Q Consensus 655 ~~~~~~itGpN~~GKSTllr~i~~~~~laq~g~~v---pa~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~ 731 (888)
..+.++|.||.|+||||+.+.+|-- +++.+ ++.... + ...+..... ....... .+.. .........
T Consensus 51 ~~~~lll~GPpG~GKTt~a~~la~~-----~~~~~~~~~~~~~~-~-~~~~~~~~~--~~~~~~~-~~~~-~~~~~~~~~ 119 (253)
T d1sxja2 51 VFRAAMLYGPPGIGKTTAAHLVAQE-----LGYDILEQNASDVR-S-KTLLNAGVK--NALDNMS-VVGY-FKHNEEAQN 119 (253)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH-----TTCEEEEECTTSCC-C-HHHHHHTGG--GGTTBCC-STTT-TTC----CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH-----HHHHHHCCCCCCCH-H-HHHHHHHHH--HHHHCCH-HHHH-HHHHHHCCC
T ss_conf 8744999879999888999999999-----87512013443221-1-688999998--8763121-2101-334320145
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 38999399980999999945499999999999985399739999067
Q 002722 732 GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHF 778 (888)
Q Consensus 732 ~~~~~sLvllDE~~~gtd~~~~~~i~~~~~~~l~~~~~~~~l~~TH~ 778 (888)
.-....++++||.-.-+.. ..... ..+++.... ...++++++.+
T Consensus 120 ~~~~~~vi~ide~~~~~~~-~~~~~-~~~~~~~~~-~~~~ii~i~~~ 163 (253)
T d1sxja2 120 LNGKHFVIIMDEVDGMSGG-DRGGV-GQLAQFCRK-TSTPLILICNE 163 (253)
T ss_dssp SSTTSEEEEECSGGGCCTT-STTHH-HHHHHHHHH-CSSCEEEEESC
T ss_pred CCCCCEEEEEEECCCCCCC-HHHHH-HHHHHHHCC-CCCCCCCCCCC
T ss_conf 5665137776301111100-01346-777654012-34222111355
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=94.37 E-value=0.011 Score=31.52 Aligned_cols=23 Identities=35% Similarity=0.380 Sum_probs=19.7
Q ss_pred EEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 07999915998715798444477
Q 002722 657 WFQIITGPNMGGKSTFIRQVGVN 679 (888)
Q Consensus 657 ~~~~itGpN~~GKSTllr~i~~~ 679 (888)
+.++|+||.|+||||+-|.+|-.
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~ 25 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQ 25 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 74999899999999999999999
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.22 E-value=0.11 Score=25.03 Aligned_cols=29 Identities=14% Similarity=0.125 Sum_probs=24.7
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 79970799991599871579844447786
Q 002722 653 RGKSWFQIITGPNMGGKSTFIRQVGVNIL 681 (888)
Q Consensus 653 ~~~~~~~~itGpN~~GKSTllr~i~~~~~ 681 (888)
.+.|++++|.||.|+|||||.-+++....
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~~~~~~ 61 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTLAVMVQ 61 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 55887999985898988999999999863
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=94.12 E-value=0.053 Score=27.18 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=18.7
Q ss_pred CEEEEEEECCCCCHHHHHHHHH
Q ss_conf 7079999159987157984444
Q 002722 656 SWFQIITGPNMGGKSTFIRQVG 677 (888)
Q Consensus 656 ~~~~~itGpN~~GKSTllr~i~ 677 (888)
+++.+|+||-|+||||.+..+.
T Consensus 163 ~~~~vI~G~pGTGKTt~i~~~l 184 (359)
T d1w36d1 163 RRISVISGGPGTGKTTTVAKLL 184 (359)
T ss_dssp BSEEEEECCTTSTHHHHHHHHH
T ss_pred CCEEEEECCCCCCCEEHHHHHH
T ss_conf 8859997689887521699999
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.12 E-value=0.0041 Score=34.46 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=20.8
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 7079999159987157984444778
Q 002722 656 SWFQIITGPNMGGKSTFIRQVGVNI 680 (888)
Q Consensus 656 ~~~~~itGpN~~GKSTllr~i~~~~ 680 (888)
...+++.||-|+|||.+.|++|...
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 8669998999988889999986213
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=94.04 E-value=0.12 Score=24.81 Aligned_cols=103 Identities=18% Similarity=0.198 Sum_probs=51.3
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 70799991599871579844447786621176334665452179999986498003420514048999999999983899
Q 002722 656 SWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATD 735 (888)
Q Consensus 656 ~~~~~itGpN~~GKSTllr~i~~~~~laq~g~~vpa~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~~~ 735 (888)
..+.+++||-|+|||.+.+.+|.-. |.-+|--. +...+-+......|.. ++..+...+..
T Consensus 123 ~g~~l~~G~pG~GKT~la~ala~~~-----~~~~~~~~------------~~~~~~~~~~~G~~e~---~~~~~f~~a~~ 182 (321)
T d1w44a_ 123 SGMVIVTGKGNSGKTPLVHALGEAL-----GGKDKYAT------------VRFGEPLSGYNTDFNV---FVDDIARAMLQ 182 (321)
T ss_dssp SEEEEEECSSSSCHHHHHHHHHHHH-----HTTSCCEE------------EEBSCSSTTCBCCHHH---HHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH-----CCCCCEEE------------EEHHHHHHCCCCHHHH---HHHHHHHHHHH
T ss_conf 8638887799850889999999986-----37998089------------7826854424445789---99999999862
Q ss_pred CCEEEEECCCCCC-----CHHHH--HHHHHHHHHH---HHHCCCCEEEEEECC
Q ss_conf 9399980999999-----94549--9999999999---985399739999067
Q 002722 736 RSLIIIDELGRGT-----STYDG--FGLAWAICEH---LVEEIRAPTLFATHF 778 (888)
Q Consensus 736 ~sLvllDE~~~gt-----d~~~~--~~i~~~~~~~---l~~~~~~~~l~~TH~ 778 (888)
++++++||+-+-. +...+ ....-.++.. +....++.++.+|.-
T Consensus 183 ~~ilf~DEid~~~~~r~~~~~~~~~~r~v~~lL~e~dg~~~~~~v~viaatN~ 235 (321)
T d1w44a_ 183 HRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNP 235 (321)
T ss_dssp CSEEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred CCEEEEEHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCC
T ss_conf 65897410122212345678987413345156652035566788499983797
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.03 E-value=0.013 Score=31.08 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=18.7
Q ss_pred EEEEEEECCCCCHHHHHHHHHH
Q ss_conf 0799991599871579844447
Q 002722 657 WFQIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 657 ~~~~itGpN~~GKSTllr~i~~ 678 (888)
+.++|+||+|+||+|+++.++.
T Consensus 2 rpIvl~GpsG~GK~tl~~~L~~ 23 (186)
T d1gkya_ 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
T ss_conf 7699989999998999999997
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.00 E-value=0.021 Score=29.82 Aligned_cols=27 Identities=11% Similarity=0.083 Sum_probs=22.2
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 997079999159987157984444778
Q 002722 654 GKSWFQIITGPNMGGKSTFIRQVGVNI 680 (888)
Q Consensus 654 ~~~~~~~itGpN~~GKSTllr~i~~~~ 680 (888)
.....++|.||.|+||||+.+.+|.-.
T Consensus 30 ~~P~~ilL~GpPGtGKT~la~~la~~~ 56 (273)
T d1gvnb_ 30 ESPTAFLLGGQPGSGKTSLRSAIFEET 56 (273)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 999799988979988999999999986
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.95 E-value=0.014 Score=30.93 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=18.1
Q ss_pred EEEEEECCCCCHHHHHHHHHH
Q ss_conf 799991599871579844447
Q 002722 658 FQIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 658 ~~~itGpN~~GKSTllr~i~~ 678 (888)
.++|.||+|+||||+.+.++-
T Consensus 2 pIvl~GPsGsGK~tl~~~L~~ 22 (190)
T d1lvga_ 2 PVVLSGPSGAGKSTLLKKLFQ 22 (190)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 199999999999999999997
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=93.94 E-value=0.022 Score=29.72 Aligned_cols=29 Identities=10% Similarity=0.158 Sum_probs=18.5
Q ss_pred CCCCEEECCHHH-HHHHHHHHHHHCCCEEEEEEE
Q ss_conf 987310029778-999999998422975899983
Q 002722 73 DALSSVSVSKNM-FETIARDLLLERTDHTLELYE 105 (888)
Q Consensus 73 ~~~p~~gvp~~~-~~~yl~~Lv~~~G~~kVai~e 105 (888)
.|.|=+| +.+ .+.+++.+. ..| +||||..
T Consensus 60 tG~pGaG--KSTLi~~l~~~~~-~~g-~~vavla 89 (327)
T d2p67a1 60 TGTPGAG--KSTFLEAFGMLLI-REG-LKVAVIA 89 (327)
T ss_dssp EECTTSC--HHHHHHHHHHHHH-HTT-CCEEEEE
T ss_pred ECCCCCC--HHHHHHHHHHHHH-HCC-CCEEEEC
T ss_conf 3899998--9999999999997-569-8332203
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.82 E-value=0.018 Score=30.27 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=19.7
Q ss_pred EEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 07999915998715798444477
Q 002722 657 WFQIITGPNMGGKSTFIRQVGVN 679 (888)
Q Consensus 657 ~~~~itGpN~~GKSTllr~i~~~ 679 (888)
-+++|+||-||||||+-+.++..
T Consensus 3 ~iIgI~G~~gSGKSTla~~L~~~ 25 (213)
T d1uj2a_ 3 FLIGVSGGTASGKSSVCAKIVQL 25 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89999899978799999999999
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.76 E-value=0.02 Score=29.98 Aligned_cols=22 Identities=9% Similarity=0.058 Sum_probs=19.1
Q ss_pred CEEEEEEECCCCCHHHHHHHHH
Q ss_conf 7079999159987157984444
Q 002722 656 SWFQIITGPNMGGKSTFIRQVG 677 (888)
Q Consensus 656 ~~~~~itGpN~~GKSTllr~i~ 677 (888)
.+.++|.||+|+||+|+++.+.
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~ 24 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLI 24 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHH
T ss_conf 7719999989999999999999
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=93.73 E-value=0.017 Score=30.37 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=18.3
Q ss_pred EEEEEECCCCCHHHHHHHHHH
Q ss_conf 799991599871579844447
Q 002722 658 FQIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 658 ~~~itGpN~~GKSTllr~i~~ 678 (888)
.++|+||.||||||+.+.++.
T Consensus 6 ~I~i~G~pGsGKTTia~~La~ 26 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELAS 26 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 798989999998999999999
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=93.72 E-value=0.14 Score=24.42 Aligned_cols=118 Identities=15% Similarity=0.092 Sum_probs=58.5
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHH-----HHHHCCCCCCCCC-CCC----CHHHHHHHHCCCCHHHHHCCCHHH-HHH
Q ss_conf 97079999159987157984444778-----6621176334665-452----179999986498003420514048-999
Q 002722 655 KSWFQIITGPNMGGKSTFIRQVGVNI-----LMAQVGSFVPCDR-ASI----SVRDCIFARVGAGDCQLRGVSTFM-QEM 723 (888)
Q Consensus 655 ~~~~~~itGpN~~GKSTllr~i~~~~-----~laq~g~~vpa~~-~~~----~~~d~i~~~~~~~d~~~~~~s~f~-~e~ 723 (888)
...+++|.|+-|.||||+.+.+.--. .....-.||+... ... .....+..+.+..+.......... ...
T Consensus 43 ~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~vs~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (277)
T d2a5yb3 43 DSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVV 122 (277)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHH
T ss_conf 84089997799788899999999855655401276489999368777778999999999872202202786321233699
Q ss_pred HHHHHHHH-HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH
Q ss_conf 99999998-38999399980999999945499999999999985399739999067469898
Q 002722 724 LETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTAL 784 (888)
Q Consensus 724 ~~~~~il~-~~~~~sLvllDE~~~gtd~~~~~~i~~~~~~~l~~~~~~~~l~~TH~~~l~~~ 784 (888)
.....+-. ...++.|+++|..- +... ++.+.. .++.+|++|-..+++..
T Consensus 123 ~~~~~~~~~L~~kr~LlVLDDv~------~~~~-----~~~~~~-~~srilvTTR~~~v~~~ 172 (277)
T d2a5yb3 123 LKRMICNALIDRPNTLFVFDDVV------QEET-----IRWAQE-LRLRCLVTTRDVEISNA 172 (277)
T ss_dssp HHHHHHHHHTTSTTEEEEEEEEC------CHHH-----HHHHHH-TTCEEEEEESBGGGGGG
T ss_pred HHHHHHHHHHCCCCEEEECCHHH------HHHH-----HHHHCC-CCCEEEEEEEHHHHHHH
T ss_conf 99999999844688167525066------7766-----555204-57559999644899986
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=93.66 E-value=0.14 Score=24.36 Aligned_cols=11 Identities=9% Similarity=0.051 Sum_probs=7.7
Q ss_pred CCCCHHHHHHH
Q ss_conf 75738898622
Q 002722 312 KNFSLFGLMNR 322 (888)
Q Consensus 312 ~~~SLf~lLn~ 322 (888)
-...-+.+||.
T Consensus 229 ~PdKAidlld~ 239 (387)
T d1qvra2 229 LPDKAIDLIDE 239 (387)
T ss_dssp THHHHHHHHHH
T ss_pred CHHHHHHHHHH
T ss_conf 70468899999
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.57 E-value=0.024 Score=29.42 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=20.3
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 079999159987157984444778
Q 002722 657 WFQIITGPNMGGKSTFIRQVGVNI 680 (888)
Q Consensus 657 ~~~~itGpN~~GKSTllr~i~~~~ 680 (888)
..++++||.|+||||+.+.++--.
T Consensus 34 ~~lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 34 PHMLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 859998999998499999999997
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.43 E-value=0.03 Score=28.82 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=22.3
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 9970799991599871579844447
Q 002722 654 GKSWFQIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 654 ~~~~~~~itGpN~~GKSTllr~i~~ 678 (888)
++|.++++-|+.||||||..+.++-
T Consensus 1 ~kGk~I~iEG~DGsGKST~~~~L~~ 25 (214)
T d1tmka_ 1 GRGKLILIEGLDRTGKTTQCNILYK 25 (214)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9768999989988869999999999
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=93.31 E-value=0.038 Score=28.15 Aligned_cols=25 Identities=20% Similarity=0.132 Sum_probs=21.5
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 9970799991599871579844447
Q 002722 654 GKSWFQIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 654 ~~~~~~~itGpN~~GKSTllr~i~~ 678 (888)
.+..+++|.||-||||||..+.++-
T Consensus 4 ~kp~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 4 SKPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 8994899989999988999999999
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.13 E-value=0.032 Score=28.57 Aligned_cols=30 Identities=30% Similarity=0.363 Sum_probs=23.5
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 97079999159987157984444778662117
Q 002722 655 KSWFQIITGPNMGGKSTFIRQVGVNILMAQVG 686 (888)
Q Consensus 655 ~~~~~~itGpN~~GKSTllr~i~~~~~laq~g 686 (888)
.|.++++-|+.||||||+++.++- .+...|
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~--~L~~~g 30 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVE--TLEQLG 30 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHH--HHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH--HHHHCC
T ss_conf 987899989988879999999999--999679
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.09 E-value=0.039 Score=28.06 Aligned_cols=25 Identities=16% Similarity=0.097 Sum_probs=21.4
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 9970799991599871579844447
Q 002722 654 GKSWFQIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 654 ~~~~~~~itGpN~~GKSTllr~i~~ 678 (888)
+...+++|.||-||||||..+.++.
T Consensus 6 ~~~~iI~i~GppGSGKsT~a~~La~ 30 (196)
T d1ukza_ 6 DQVSVIFVLGGPGAGKGTQCEKLVK 30 (196)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 9972899989999998999999999
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=92.98 E-value=0.034 Score=28.42 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=19.8
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 079999159987157984444778662117633
Q 002722 657 WFQIITGPNMGGKSTFIRQVGVNILMAQVGSFV 689 (888)
Q Consensus 657 ~~~~itGpN~~GKSTllr~i~~~~~laq~g~~v 689 (888)
-+++|||+-||||||..+.+ ...|.+|
T Consensus 3 ~iIgITG~igSGKStv~~~l------~~~G~~v 29 (205)
T d1jjva_ 3 YIVGLTGGIGSGKTTIANLF------TDLGVPL 29 (205)
T ss_dssp EEEEEECSTTSCHHHHHHHH------HTTTCCE
T ss_pred EEEEEECCCCCCHHHHHHHH------HHCCCEE
T ss_conf 89998888878899999999------9879939
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=92.88 E-value=0.19 Score=23.58 Aligned_cols=120 Identities=16% Similarity=0.171 Sum_probs=62.6
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHCCCHHHHHHHH-HHHHHH--
Q ss_conf 97079999159987157984444778662117633466545217999998649800342051404899999-999998--
Q 002722 655 KSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLE-TASILK-- 731 (888)
Q Consensus 655 ~~~~~~itGpN~~GKSTllr~i~~~~~laq~g~~vpa~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~-~~~il~-- 731 (888)
..+-.+|+||.|.|||++...+|....-.+. |..-....++. + ....+..|.+ +-++..+ +..++.
T Consensus 42 ~k~n~lLvG~pGVGKTalv~~LA~ri~~~~v----p~~L~~~~i~~-----l-d~~~LiAg~~-~rG~~E~rl~~il~e~ 110 (195)
T d1jbka_ 42 TKNNPVLIGEPGVGKTAIVEGLAQRIINGEV----PEGLKGRRVLA-----L-DMGALVAGAK-YRGEFEERLKGVLNDL 110 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHHHTCS----CGGGTTCEEEE-----E-CHHHHHTTTC-SHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHCCC----CHHHCCCEEEE-----E-EHHHHHCCCC-CCHHHHHHHHHHHHHH
T ss_conf 8887399835875447999999999980899----97881856999-----6-6999864587-4077999999999987
Q ss_pred -HCCCCCEEEEECCCCCCCHH---HHHHHHHHHHH-HHHHCCCCEEEEEECCHHHHHHHHH
Q ss_conf -38999399980999999945---49999999999-9985399739999067469898531
Q 002722 732 -GATDRSLIIIDELGRGTSTY---DGFGLAWAICE-HLVEEIRAPTLFATHFHELTALAHE 787 (888)
Q Consensus 732 -~~~~~sLvllDE~~~gtd~~---~~~~i~~~~~~-~l~~~~~~~~l~~TH~~~l~~~~~~ 787 (888)
....+-++.+||+-.=.... .+..+ ..++. ++.. ..-.++.+|..-+..+....
T Consensus 111 ~~~~~~iILfIDeih~l~~~g~~~g~~d~-~~~Lkp~L~r-g~l~~IgatT~eey~~~~e~ 169 (195)
T d1jbka_ 111 AKQEGNVILFIDELHTMVGAGKADGAMDA-GNMLKPALAR-GELHCVGATTLDEYRQYIEK 169 (195)
T ss_dssp HHSTTTEEEEEETGGGGTT------CCCC-HHHHHHHHHT-TSCCEEEEECHHHHHHHTTT
T ss_pred HCCCCCEEEECCHHHHHHCCCCCCCCCCH-HHHHHHHHHC-CCCEEEECCCHHHHHHHHHC
T ss_conf 31798089972608998437877775238-9999999857-99549851899999999873
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.64 E-value=0.031 Score=28.66 Aligned_cols=28 Identities=14% Similarity=0.118 Sum_probs=24.0
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 7997079999159987157984444778
Q 002722 653 RGKSWFQIITGPNMGGKSTFIRQVGVNI 680 (888)
Q Consensus 653 ~~~~~~~~itGpN~~GKSTllr~i~~~~ 680 (888)
+..|+++.|+||.|+|||||.-+++...
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 8599799999589999999999999999
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.59 E-value=0.043 Score=27.76 Aligned_cols=25 Identities=24% Similarity=0.191 Sum_probs=21.4
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 9970799991599871579844447
Q 002722 654 GKSWFQIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 654 ~~~~~~~itGpN~~GKSTllr~i~~ 678 (888)
..+.+++|.||-||||||..+.++-
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~ 30 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQ 30 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 6782899989999987999999999
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.56 E-value=0.04 Score=27.96 Aligned_cols=24 Identities=29% Similarity=0.190 Sum_probs=21.0
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 707999915998715798444477
Q 002722 656 SWFQIITGPNMGGKSTFIRQVGVN 679 (888)
Q Consensus 656 ~~~~~itGpN~~GKSTllr~i~~~ 679 (888)
.++++|-|+-||||||+++.++..
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~ 25 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQL 25 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 988999878887799999999999
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.46 E-value=0.02 Score=29.94 Aligned_cols=25 Identities=20% Similarity=0.162 Sum_probs=21.5
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 9707999915998715798444477
Q 002722 655 KSWFQIITGPNMGGKSTFIRQVGVN 679 (888)
Q Consensus 655 ~~~~~~itGpN~~GKSTllr~i~~~ 679 (888)
.|.++.|+|+.||||||+-+.++-.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~ 42 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEY 42 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9969998899999999999999999
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=92.44 E-value=0.047 Score=27.54 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=22.6
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 79970799991599871579844447
Q 002722 653 RGKSWFQIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 653 ~~~~~~~~itGpN~~GKSTllr~i~~ 678 (888)
..+|.++.+||..||||||+-+.++-
T Consensus 21 ~~kg~vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 21 NQRGLTIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 89986999989999998999999998
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=92.44 E-value=0.046 Score=27.57 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=20.7
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 970799991599871579844447
Q 002722 655 KSWFQIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 655 ~~~~~~itGpN~~GKSTllr~i~~ 678 (888)
.+++++|+||-|+|||++++.++.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 598799986999829999999999
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=92.41 E-value=0.051 Score=27.27 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=21.3
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 9970799991599871579844447
Q 002722 654 GKSWFQIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 654 ~~~~~~~itGpN~~GKSTllr~i~~ 678 (888)
.+.-+++|.|+-||||||+++.++-
T Consensus 7 ~kp~~I~ieG~~GsGKTTl~~~L~~ 31 (197)
T d2vp4a1 7 TQPFTVLIEGNIGSGKTTYLNHFEK 31 (197)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9861999889999888999999998
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=92.22 E-value=0.036 Score=28.27 Aligned_cols=22 Identities=18% Similarity=0.104 Sum_probs=18.7
Q ss_pred EEEEEEECCCCCHHHHHHHHHH
Q ss_conf 0799991599871579844447
Q 002722 657 WFQIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 657 ~~~~itGpN~~GKSTllr~i~~ 678 (888)
+.++|+||.|+||||.-+.+|-
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~ 24 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELAR 24 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHH
T ss_conf 9889988999988999999999
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.18 E-value=0.046 Score=27.59 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=19.6
Q ss_pred CEEEEEEECCCCCHHHHHHHHH
Q ss_conf 7079999159987157984444
Q 002722 656 SWFQIITGPNMGGKSTFIRQVG 677 (888)
Q Consensus 656 ~~~~~itGpN~~GKSTllr~i~ 677 (888)
++..++.|+.|.|||||++.+.
T Consensus 95 ~kt~~~~G~SGVGKSTLiN~L~ 116 (225)
T d1u0la2 95 GKISTMAGLSGVGKSSLLNAIN 116 (225)
T ss_dssp SSEEEEECSTTSSHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHC
T ss_conf 9808997889877888877305
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=92.07 E-value=0.04 Score=27.96 Aligned_cols=64 Identities=20% Similarity=0.242 Sum_probs=37.9
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 07999915998715798444477866211763346654521799999864980034205140489999999999838999
Q 002722 657 WFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDR 736 (888)
Q Consensus 657 ~~~~itGpN~~GKSTllr~i~~~~~laq~g~~vpa~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~~~~ 736 (888)
..++++||.|+||||+.|.+|-- .++..- .+. ..+. . ....++.++......
T Consensus 36 ~~~L~~GPpGtGKT~lA~~la~~-----~~~~~~----~~~----------~~~~------~---~~~~~~~~~~~~~~~ 87 (238)
T d1in4a2 36 DHVLLAGPPGLGKTTLAHIIASE-----LQTNIH----VTS----------GPVL------V---KQGDMAAILTSLERG 87 (238)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH-----HTCCEE----EEE----------TTTC------C---SHHHHHHHHHHCCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHC-----CCCCCC----CCC----------CCCC------C---CHHHHHHHHHHHCCC
T ss_conf 74898799997388999999850-----388853----325----------7442------2---488899998754358
Q ss_pred CEEEEECCCCCC
Q ss_conf 399980999999
Q 002722 737 SLIIIDELGRGT 748 (888)
Q Consensus 737 sLvllDE~~~gt 748 (888)
..+++||.-+-.
T Consensus 88 ~~~~ide~~~~~ 99 (238)
T d1in4a2 88 DVLFIDEIHRLN 99 (238)
T ss_dssp CEEEEETGGGCC
T ss_pred CCHHHHHHHHHH
T ss_conf 824777898840
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=92.02 E-value=0.042 Score=27.81 Aligned_cols=47 Identities=21% Similarity=0.212 Sum_probs=26.0
Q ss_pred CCCCCCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 98778448999741899857676065125842004875345799707999915998
Q 002722 612 PYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMG 667 (888)
Q Consensus 612 ~~~~P~~~~~~~~~l~i~~~rhp~~e~~~~~~~v~n~~~~~~~~~~~~~itGpN~~ 667 (888)
.|+.|++...+ +.+. |-|.+... ..|++.++--. ...++++-=.+.-
T Consensus 192 ~yI~Pq~~~aD---I~~~--r~p~~dt~--~p~~~~~ip~~--~e~~~v~~~~~~~ 238 (288)
T d1a7ja_ 192 HCIVPQFSQTD---INFQ--RVPVVDTS--NPFIARWIPTA--DESVVVIRFRNPR 238 (288)
T ss_dssp HHTGGGGGTCS---EEEE--EEESSCCS--CGGGCCSCCCG--GGEEEEEEESSCS
T ss_pred HHHHHHHHCEE---EEEE--ECCCCCCC--CCCHHCCCCCC--CCCEEEEEECCCC
T ss_conf 99998452036---9997--44754456--74200257997--6667999836855
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.92 E-value=0.044 Score=27.72 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=19.5
Q ss_pred EEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 79999159987157984444778
Q 002722 658 FQIITGPNMGGKSTFIRQVGVNI 680 (888)
Q Consensus 658 ~~~itGpN~~GKSTllr~i~~~~ 680 (888)
.++++||.|+||||+.+.++--.
T Consensus 38 ~~ll~Gp~G~GKTt~a~~la~~l 60 (224)
T d1sxjb2 38 HMIISGMPGIGKTTSVHCLAHEL 60 (224)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHHHH
T ss_conf 49998899987054699999997
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=91.80 E-value=0.051 Score=27.27 Aligned_cols=20 Identities=35% Similarity=0.210 Sum_probs=17.3
Q ss_pred EEEEEEECCCCCHHHHHHHH
Q ss_conf 07999915998715798444
Q 002722 657 WFQIITGPNMGGKSTFIRQV 676 (888)
Q Consensus 657 ~~~~itGpN~~GKSTllr~i 676 (888)
-+++|||+.||||||+.+.+
T Consensus 4 ~IIgitG~~gSGKstva~~l 23 (191)
T d1uf9a_ 4 IIIGITGNIGSGKSTVAALL 23 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
T ss_conf 89999898877899999999
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=91.74 E-value=0.26 Score=22.68 Aligned_cols=100 Identities=13% Similarity=0.075 Sum_probs=53.5
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCC----CCCCCCCCCCCHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHH
Q ss_conf 997079999159987157984444778662117----6334665452179999986498003420514048999999999
Q 002722 654 GKSWFQIITGPNMGGKSTFIRQVGVNILMAQVG----SFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASI 729 (888)
Q Consensus 654 ~~~~~~~itGpN~~GKSTllr~i~~~~~laq~g----~~vpa~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~i 729 (888)
+.+..++++||+|+||+|+.+.++-...-..-. ..+-++...+++ .+.+++..-
T Consensus 13 ~~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~~~~~I~I----------------------d~IR~i~~~ 70 (198)
T d2gnoa2 13 SEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGI----------------------DDIRTIKDF 70 (198)
T ss_dssp CSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCH----------------------HHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCH----------------------HHHHHHHHH
T ss_conf 9985599889899888999999999984345679988998077678998----------------------999999999
Q ss_pred HHH---CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHC-CCCEEEEEECCHH
Q ss_conf 983---89993999809999999454999999999999853-9973999906746
Q 002722 730 LKG---ATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEE-IRAPTLFATHFHE 780 (888)
Q Consensus 730 l~~---~~~~sLvllDE~~~gtd~~~~~~i~~~~~~~l~~~-~~~~~l~~TH~~~ 780 (888)
+.. ..+..++++||.-+-+. .+- .|++..+-+- .++.++++|++.+
T Consensus 71 ~~~~~~~~~~KviIId~ad~l~~----~aq-NaLLK~LEEPp~~t~fiLit~~~~ 120 (198)
T d2gnoa2 71 LNYSPELYTRKYVIVHDCERMTQ----QAA-NAFLKALEEPPEYAVIVLNTRRWH 120 (198)
T ss_dssp HTSCCSSSSSEEEEETTGGGBCH----HHH-HHTHHHHHSCCTTEEEEEEESCGG
T ss_pred HHHCCCCCCCEEEEEECCCCCCH----HHH-HHHHHHHHCCCCCCEEEECCCCHH
T ss_conf 96175458987999947310366----666-478887737898852222069956
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=91.64 E-value=0.048 Score=27.43 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=18.3
Q ss_pred EEEEECCCCCHHHHHHHHHHH
Q ss_conf 999915998715798444477
Q 002722 659 QIITGPNMGGKSTFIRQVGVN 679 (888)
Q Consensus 659 ~~itGpN~~GKSTllr~i~~~ 679 (888)
++|+||.|+||||+-|.+|.-
T Consensus 3 I~liG~~GsGKsTi~k~La~~ 23 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKD 23 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999899999889999999998
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=91.58 E-value=0.07 Score=26.37 Aligned_cols=29 Identities=14% Similarity=0.283 Sum_probs=17.8
Q ss_pred CCCCEEECCHHH-HHHHHHHHHHHCCCEEEEEEE
Q ss_conf 987310029778-999999998422975899983
Q 002722 73 DALSSVSVSKNM-FETIARDLLLERTDHTLELYE 105 (888)
Q Consensus 73 ~~~p~~gvp~~~-~~~yl~~Lv~~~G~~kVai~e 105 (888)
.|.|=+| +.+ .+..++.+. ..| +||||..
T Consensus 57 tG~pGaG--KSTli~~l~~~~~-~~g-~~vaVia 86 (323)
T d2qm8a1 57 TGVPGVG--KSTTIDALGSLLT-AAG-HKVAVLA 86 (323)
T ss_dssp ECCTTSC--HHHHHHHHHHHHH-HTT-CCEEEEE
T ss_pred ECCCCCC--HHHHHHHHHHHHH-HCC-CCEEEEE
T ss_conf 1799888--9999999999876-368-7513443
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=91.51 E-value=0.19 Score=23.48 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=20.4
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 079999159987157984444778
Q 002722 657 WFQIITGPNMGGKSTFIRQVGVNI 680 (888)
Q Consensus 657 ~~~~itGpN~~GKSTllr~i~~~~ 680 (888)
..+++.||.|+|||.+.|++|-..
T Consensus 53 ~~~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 53 GSFLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 589997787500699999998633
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=91.39 E-value=0.059 Score=26.88 Aligned_cols=27 Identities=33% Similarity=0.389 Sum_probs=20.5
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 079999159987157984444778662117633
Q 002722 657 WFQIITGPNMGGKSTFIRQVGVNILMAQVGSFV 689 (888)
Q Consensus 657 ~~~~itGpN~~GKSTllr~i~~~~~laq~g~~v 689 (888)
-+++|||+-||||||..+.+ ...|..|
T Consensus 4 ~iIgitG~igSGKStv~~~l------~~~G~~v 30 (208)
T d1vhta_ 4 YIVALTGGIGSGKSTVANAF------ADLGINV 30 (208)
T ss_dssp EEEEEECCTTSCHHHHHHHH------HHTTCEE
T ss_pred EEEEEECCCCCCHHHHHHHH------HHCCCCE
T ss_conf 79997898868899999999------9879919
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.37 E-value=0.056 Score=27.02 Aligned_cols=29 Identities=17% Similarity=0.123 Sum_probs=24.5
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 79970799991599871579844447786
Q 002722 653 RGKSWFQIITGPNMGGKSTFIRQVGVNIL 681 (888)
Q Consensus 653 ~~~~~~~~itGpN~~GKSTllr~i~~~~~ 681 (888)
...|++++|+||.|+||||+.-+++....
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~~~~~~ 59 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTLAVTCQ 59 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHHTTTTT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 86996999983899988999999999863
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.05 E-value=0.18 Score=23.72 Aligned_cols=25 Identities=16% Similarity=0.201 Sum_probs=20.7
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 7999915998715798444477866
Q 002722 658 FQIITGPNMGGKSTFIRQVGVNILM 682 (888)
Q Consensus 658 ~~~itGpN~~GKSTllr~i~~~~~l 682 (888)
-+++.|.=.+||||+|+.+.+.-++
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~~l 52 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRDFL 52 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 6999768989799999999689868
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=91.05 E-value=0.069 Score=26.44 Aligned_cols=17 Identities=18% Similarity=0.337 Sum_probs=8.2
Q ss_pred HHHHHHH-HCCCEEEEEEE
Q ss_conf 9999984-22975899983
Q 002722 88 IARDLLL-ERTDHTLELYE 105 (888)
Q Consensus 88 yl~~Lv~-~~G~~kVai~e 105 (888)
.+++|+. ..| +||||.+
T Consensus 19 ll~~lL~~~~~-~riaVI~ 36 (222)
T d1nija1 19 LLRHILNEQHG-YKIAVIE 36 (222)
T ss_dssp HHHHHHHSCCC-CCEEEEC
T ss_pred HHHHHHHCCCC-CCEEEEE
T ss_conf 99999856789-8379997
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.02 E-value=0.089 Score=25.69 Aligned_cols=30 Identities=13% Similarity=-0.038 Sum_probs=25.4
Q ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 579970799991599871579844447786
Q 002722 652 IRGKSWFQIITGPNMGGKSTFIRQVGVNIL 681 (888)
Q Consensus 652 ~~~~~~~~~itGpN~~GKSTllr~i~~~~~ 681 (888)
.+..|++++|.||.|+|||++.-+++....
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~~~~ 62 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCVTAQ 62 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 976897999988998878899999999997
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.00 E-value=0.062 Score=26.73 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=17.9
Q ss_pred EEEEECCCCCHHHHHHHHHHH
Q ss_conf 999915998715798444477
Q 002722 659 QIITGPNMGGKSTFIRQVGVN 679 (888)
Q Consensus 659 ~~itGpN~~GKSTllr~i~~~ 679 (888)
++++|+.|+||||+-|.+|..
T Consensus 4 IvliG~~G~GKSTig~~La~~ 24 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKA 24 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 899889999889999999998
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.73 E-value=0.075 Score=26.19 Aligned_cols=29 Identities=14% Similarity=0.278 Sum_probs=22.6
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 0799991599871579844447786621176
Q 002722 657 WFQIITGPNMGGKSTFIRQVGVNILMAQVGS 687 (888)
Q Consensus 657 ~~~~itGpN~~GKSTllr~i~~~~~laq~g~ 687 (888)
-+++++|+.|+||||+.+.++. .+...|.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~--~l~~~~~ 31 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTR--YLNFIGV 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH--HHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHH--HHHHCCC
T ss_conf 8999989999999999999999--9974699
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.71 E-value=0.075 Score=26.17 Aligned_cols=22 Identities=18% Similarity=0.148 Sum_probs=19.6
Q ss_pred EEEEEEECCCCCHHHHHHHHHH
Q ss_conf 0799991599871579844447
Q 002722 657 WFQIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 657 ~~~~itGpN~~GKSTllr~i~~ 678 (888)
-+++|.||-||||||..+.++-
T Consensus 2 ~iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 2 LVVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
T ss_conf 3999979999998999999999
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.29 E-value=0.11 Score=25.12 Aligned_cols=23 Identities=30% Similarity=0.287 Sum_probs=19.5
Q ss_pred CEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 70799991599871579844447
Q 002722 656 SWFQIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 656 ~~~~~itGpN~~GKSTllr~i~~ 678 (888)
.++++|-|+-||||||+++.++-
T Consensus 2 pk~IviEG~~GsGKST~~~~L~~ 24 (241)
T d2ocpa1 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
T ss_conf 81999989988859999999999
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=90.28 E-value=0.094 Score=25.54 Aligned_cols=31 Identities=19% Similarity=0.144 Sum_probs=26.3
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 7997079999159987157984444778662
Q 002722 653 RGKSWFQIITGPNMGGKSTFIRQVGVNILMA 683 (888)
Q Consensus 653 ~~~~~~~~itGpN~~GKSTllr~i~~~~~la 683 (888)
...|++++|+||.|+|||+|.-+++......
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~~~~ 61 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCVNLQNP 61 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHTTCG
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 6288599999179999899999999999853
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=90.25 E-value=0.11 Score=25.22 Aligned_cols=24 Identities=29% Similarity=0.277 Sum_probs=20.0
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 707999915998715798444477
Q 002722 656 SWFQIITGPNMGGKSTFIRQVGVN 679 (888)
Q Consensus 656 ~~~~~itGpN~~GKSTllr~i~~~ 679 (888)
.-+++|.|+.||||||+-+.+...
T Consensus 80 P~iIGIaG~sgSGKSTla~~L~~l 103 (308)
T d1sq5a_ 80 PYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCCCHHHHHHHHH
T ss_conf 889999689999876899999999
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=90.06 E-value=0.085 Score=25.85 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=18.1
Q ss_pred EEEEEECCCCCHHHHHHHHHH
Q ss_conf 799991599871579844447
Q 002722 658 FQIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 658 ~~~itGpN~~GKSTllr~i~~ 678 (888)
.++|.||-||||||..+.++.
T Consensus 5 ~I~i~GppGsGKsT~a~~La~ 25 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKT 25 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999988999998999999999
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.05 E-value=0.093 Score=25.58 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=21.9
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 79999159987157984444778662117633
Q 002722 658 FQIITGPNMGGKSTFIRQVGVNILMAQVGSFV 689 (888)
Q Consensus 658 ~~~itGpN~~GKSTllr~i~~~~~laq~g~~v 689 (888)
+++|.|+-||||||+++.++. .+...|..|
T Consensus 2 lI~ieG~dGsGKST~~~~L~~--~l~~~g~~v 31 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSG--AFRAAGRSV 31 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--HHHHTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCCE
T ss_conf 899989987899999999999--998789978
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=89.88 E-value=0.088 Score=25.74 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=19.8
Q ss_pred EEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 07999915998715798444477
Q 002722 657 WFQIITGPNMGGKSTFIRQVGVN 679 (888)
Q Consensus 657 ~~~~itGpN~~GKSTllr~i~~~ 679 (888)
..+++.||-|.||||+.+.+|.-
T Consensus 36 ~~~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 36 EHLLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 73898897998788899999998
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=89.77 E-value=0.12 Score=24.78 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=18.8
Q ss_pred CEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 70799991599871579844447
Q 002722 656 SWFQIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 656 ~~~~~itGpN~~GKSTllr~i~~ 678 (888)
|--++|.||-||||||.-+.+|.
T Consensus 3 ~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 3 GVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
T ss_conf 63899989999988999999999
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=89.47 E-value=0.1 Score=25.38 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=17.6
Q ss_pred EEEEECCCCCHHHHHHHHHH
Q ss_conf 99991599871579844447
Q 002722 659 QIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 659 ~~itGpN~~GKSTllr~i~~ 678 (888)
++|.||-||||||..+.++-
T Consensus 3 I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVA 22 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99988999998999999999
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=89.15 E-value=0.16 Score=24.09 Aligned_cols=125 Identities=15% Similarity=0.065 Sum_probs=54.3
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHH-HH------CCCCCCCCCC--CCCHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHH
Q ss_conf 7999915998715798444477866-21------1763346654--5217999998649800342051404899999999
Q 002722 658 FQIITGPNMGGKSTFIRQVGVNILM-AQ------VGSFVPCDRA--SISVRDCIFARVGAGDCQLRGVSTFMQEMLETAS 728 (888)
Q Consensus 658 ~~~itGpN~~GKSTllr~i~~~~~l-aq------~g~~vpa~~~--~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~ 728 (888)
+++++||-|.||||++|.++-...- +. .-.++++... ....+..+....+.... ..+ .....-...+..
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~l~~ 125 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQ-VRG-APALDILKALVD 125 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCC-CTT-CCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCC-CCC-CHHHHHHHHHHH
T ss_conf 899678999899999999999987541555678416630333346504678887653043233-345-127889999999
Q ss_pred HHHHCCCCCEEEEECCCCCC----CHHHHHHHHHHHHHHHHH---CCCCEEEEEECCHHHHHH
Q ss_conf 99838999399980999999----945499999999999985---399739999067469898
Q 002722 729 ILKGATDRSLIIIDELGRGT----STYDGFGLAWAICEHLVE---EIRAPTLFATHFHELTAL 784 (888)
Q Consensus 729 il~~~~~~sLvllDE~~~gt----d~~~~~~i~~~~~~~l~~---~~~~~~l~~TH~~~l~~~ 784 (888)
.........++++||...-. ...+.......+.+.+.. ...+.+++++...+....
T Consensus 126 ~~~~~~~~~~~iide~d~l~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~i~i~~~~~~~~~ 188 (287)
T d1w5sa2 126 NLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSY 188 (287)
T ss_dssp HHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHH
T ss_pred HHHHCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCHHHCCCCEEEEEECCCHHHHHH
T ss_conf 998546766541257888515665542678988999874320104565147762430899999
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=88.86 E-value=0.047 Score=27.50 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=19.3
Q ss_pred CEEEEEEECCCCCHHHHHHHHH
Q ss_conf 7079999159987157984444
Q 002722 656 SWFQIITGPNMGGKSTFIRQVG 677 (888)
Q Consensus 656 ~~~~~itGpN~~GKSTllr~i~ 677 (888)
++..++.|+.|.||||+++.+.
T Consensus 97 ~~~~vl~G~SGVGKSSLiN~L~ 118 (231)
T d1t9ha2 97 DKTTVFAGQSGVGKSSLLNAIS 118 (231)
T ss_dssp TSEEEEEESHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHC
T ss_conf 5649998778734878987515
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=88.78 E-value=0.17 Score=23.79 Aligned_cols=40 Identities=18% Similarity=0.261 Sum_probs=31.6
Q ss_pred CCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 8753457997079999159987157984444778662117
Q 002722 647 NDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVG 686 (888)
Q Consensus 647 n~~~~~~~~~~~~~itGpN~~GKSTllr~i~~~~~laq~g 686 (888)
-|.-+.+..|+-.+|.|+.|+||||++.+++..+...+.+
T Consensus 34 ID~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~~~~~~ 73 (289)
T d1xpua3 34 LDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPD 73 (289)
T ss_dssp HHHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHHHHCTT
T ss_pred EEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 6412564578755686799988789999999977515897
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.39 E-value=0.13 Score=24.61 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=18.0
Q ss_pred EEEEECCCCCHHHHHHHHHHH
Q ss_conf 999915998715798444477
Q 002722 659 QIITGPNMGGKSTFIRQVGVN 679 (888)
Q Consensus 659 ~~itGpN~~GKSTllr~i~~~ 679 (888)
++|.||-||||||..+.++.-
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999899999989999999999
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=88.32 E-value=0.13 Score=24.73 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=20.4
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 97079999159987157984444778
Q 002722 655 KSWFQIITGPNMGGKSTFIRQVGVNI 680 (888)
Q Consensus 655 ~~~~~~itGpN~~GKSTllr~i~~~~ 680 (888)
+.--++|.|+.++|||||++.+..-.
T Consensus 12 k~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 12 KTGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 77789999999989899999996788
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.14 E-value=0.15 Score=24.16 Aligned_cols=18 Identities=39% Similarity=0.492 Sum_probs=7.1
Q ss_pred EEEEEECCCCCHHHHHHH
Q ss_conf 799991599871579844
Q 002722 658 FQIITGPNMGGKSTFIRQ 675 (888)
Q Consensus 658 ~~~itGpN~~GKSTllr~ 675 (888)
+++|.|+-||||||+-+.
T Consensus 29 iIGi~G~qGSGKSTl~~~ 46 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQ 46 (286)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
T ss_conf 998379987889999999
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=88.13 E-value=0.15 Score=24.15 Aligned_cols=21 Identities=33% Similarity=0.447 Sum_probs=17.5
Q ss_pred EEEEEECCCCCHHHHHHHHHH
Q ss_conf 799991599871579844447
Q 002722 658 FQIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 658 ~~~itGpN~~GKSTllr~i~~ 678 (888)
++.|.||-||||||.-+.++-
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~ 25 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAK 25 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999789998798999999999
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=88.06 E-value=0.15 Score=24.20 Aligned_cols=20 Identities=25% Similarity=0.295 Sum_probs=17.6
Q ss_pred EEEEECCCCCHHHHHHHHHH
Q ss_conf 99991599871579844447
Q 002722 659 QIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 659 ~~itGpN~~GKSTllr~i~~ 678 (888)
++|.||-||||||..+.++-
T Consensus 3 I~i~G~pGSGKsT~~~~La~ 22 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIME 22 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99987999998999999999
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=87.98 E-value=0.19 Score=23.49 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=22.6
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 99707999915998715798444477
Q 002722 654 GKSWFQIITGPNMGGKSTFIRQVGVN 679 (888)
Q Consensus 654 ~~~~~~~itGpN~~GKSTllr~i~~~ 679 (888)
.+|.++.|.|+=|+|||||.|.++-.
T Consensus 31 ~~g~ii~L~G~LGaGKTtfvr~~~~~ 56 (158)
T d1htwa_ 31 EKAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99829999668776588999998764
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=87.98 E-value=0.16 Score=24.05 Aligned_cols=22 Identities=18% Similarity=0.152 Sum_probs=18.3
Q ss_pred EEEEEECCCCCHHHHHHHHHHH
Q ss_conf 7999915998715798444477
Q 002722 658 FQIITGPNMGGKSTFIRQVGVN 679 (888)
Q Consensus 658 ~~~itGpN~~GKSTllr~i~~~ 679 (888)
.++|.||-||||||..+.++--
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEK 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999889999879999999998
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=87.95 E-value=0.21 Score=23.27 Aligned_cols=29 Identities=21% Similarity=0.181 Sum_probs=24.0
Q ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 57997079999159987157984444778
Q 002722 652 IRGKSWFQIITGPNMGGKSTFIRQVGVNI 680 (888)
Q Consensus 652 ~~~~~~~~~itGpN~~GKSTllr~i~~~~ 680 (888)
+.++++.+++.||-|+|||++.+++|...
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~ 178 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELC 178 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 89976769998999988899999999985
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.55 E-value=0.16 Score=23.97 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=18.6
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 079999159987157984444778
Q 002722 657 WFQIITGPNMGGKSTFIRQVGVNI 680 (888)
Q Consensus 657 ~~~~itGpN~~GKSTllr~i~~~~ 680 (888)
.-+++.|+.|+||||++++.....
T Consensus 7 ~KilllG~~~vGKTsll~~~~~~~ 30 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRILH 30 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 779999899998899999895098
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=87.41 E-value=0.19 Score=23.54 Aligned_cols=21 Identities=19% Similarity=0.204 Sum_probs=17.3
Q ss_pred EEEEEEECCCCCHHHHHHHHH
Q ss_conf 079999159987157984444
Q 002722 657 WFQIITGPNMGGKSTFIRQVG 677 (888)
Q Consensus 657 ~~~~itGpN~~GKSTllr~i~ 677 (888)
.+++|||+-||||||..+.++
T Consensus 2 ~iIgiTG~igSGKsTva~~l~ 22 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIM 22 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 899997999988999999999
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=87.18 E-value=0.18 Score=23.77 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=19.9
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 9707999915998715798444477
Q 002722 655 KSWFQIITGPNMGGKSTFIRQVGVN 679 (888)
Q Consensus 655 ~~~~~~itGpN~~GKSTllr~i~~~ 679 (888)
+.--+++.|..++|||||++.+...
T Consensus 14 k~~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 14 QEHKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 8579999999998989999999668
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=87.17 E-value=0.17 Score=23.83 Aligned_cols=21 Identities=19% Similarity=0.476 Sum_probs=18.5
Q ss_pred EEEEECCCCCHHHHHHHHHHH
Q ss_conf 999915998715798444477
Q 002722 659 QIITGPNMGGKSTFIRQVGVN 679 (888)
Q Consensus 659 ~~itGpN~~GKSTllr~i~~~ 679 (888)
++|.|+.++|||||++.+..-
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998989999999659
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=87.16 E-value=0.19 Score=23.55 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=19.5
Q ss_pred EEEEEEECCCCCHHHHHHHHHH
Q ss_conf 0799991599871579844447
Q 002722 657 WFQIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 657 ~~~~itGpN~~GKSTllr~i~~ 678 (888)
.+++|-||.||||||.-+.++-
T Consensus 4 piI~I~GppGSGKgT~ak~La~ 25 (225)
T d1ckea_ 4 PVITIDGPSGAGKGTLCKAMAE 25 (225)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
T ss_conf 8899779998898999999999
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=86.80 E-value=0.19 Score=23.62 Aligned_cols=21 Identities=24% Similarity=0.235 Sum_probs=17.8
Q ss_pred EEEEEECCCCCHHHHHHHHHH
Q ss_conf 799991599871579844447
Q 002722 658 FQIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 658 ~~~itGpN~~GKSTllr~i~~ 678 (888)
-++|.||-||||||+-+.++-
T Consensus 8 rIiliG~PGSGKtT~a~~La~ 28 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITK 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 699988999987999999999
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.44 E-value=0.2 Score=23.42 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=17.9
Q ss_pred EEEEECCCCCHHHHHHHHHHH
Q ss_conf 999915998715798444477
Q 002722 659 QIITGPNMGGKSTFIRQVGVN 679 (888)
Q Consensus 659 ~~itGpN~~GKSTllr~i~~~ 679 (888)
++|.||-||||||.-+.++--
T Consensus 3 I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999889999979999999999
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.41 E-value=0.22 Score=23.19 Aligned_cols=22 Identities=14% Similarity=0.126 Sum_probs=18.9
Q ss_pred EEEEEEECCCCCHHHHHHHHHH
Q ss_conf 0799991599871579844447
Q 002722 657 WFQIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 657 ~~~~itGpN~~GKSTllr~i~~ 678 (888)
+-++|.|+.++||||+++.+..
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~ 22 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLT 22 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHC
T ss_conf 9899999999898999999980
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=86.22 E-value=0.2 Score=23.38 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=18.2
Q ss_pred EEEEEECCCCCHHHHHHHHHH
Q ss_conf 799991599871579844447
Q 002722 658 FQIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 658 ~~~itGpN~~GKSTllr~i~~ 678 (888)
-+++.|+.++|||||++.+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~ 24 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNG 24 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHCC
T ss_conf 999999999899999999808
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=86.15 E-value=0.21 Score=23.26 Aligned_cols=20 Identities=25% Similarity=0.519 Sum_probs=17.5
Q ss_pred EEEEECCCCCHHHHHHHHHH
Q ss_conf 99991599871579844447
Q 002722 659 QIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 659 ~~itGpN~~GKSTllr~i~~ 678 (888)
+++.|+.++|||||++++..
T Consensus 5 i~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999898999999971
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=86.14 E-value=0.3 Score=22.28 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=20.3
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 0799991599871579844447786
Q 002722 657 WFQIITGPNMGGKSTFIRQVGVNIL 681 (888)
Q Consensus 657 ~~~~itGpN~~GKSTllr~i~~~~~ 681 (888)
..+++.||.|.|||.+.+.+|-..+
T Consensus 54 ~~~lf~Gp~G~GKt~lak~la~~l~ 78 (315)
T d1qvra3 54 GSFLFLGPTGVGKTELAKTLAATLF 78 (315)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHC
T ss_conf 6999978886248999999999835
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.92 E-value=0.21 Score=23.25 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=17.8
Q ss_pred EEEEECCCCCHHHHHHHHHH
Q ss_conf 99991599871579844447
Q 002722 659 QIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 659 ~~itGpN~~GKSTllr~i~~ 678 (888)
++|.|+.++|||||++.+..
T Consensus 3 I~liG~~nvGKSSLln~l~~ 22 (166)
T d2qtvb1 3 LLFLGLDNAGKTTLLHMLKN 22 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999999999999958
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=85.57 E-value=0.24 Score=22.89 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=19.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHH
Q ss_conf 7999915998715798444477
Q 002722 658 FQIITGPNMGGKSTFIRQVGVN 679 (888)
Q Consensus 658 ~~~itGpN~~GKSTllr~i~~~ 679 (888)
.++|.|+-++|||||++.+...
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999899998799999985298
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=84.78 E-value=0.27 Score=22.57 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=18.4
Q ss_pred EEEEEECCCCCHHHHHHHHHH
Q ss_conf 799991599871579844447
Q 002722 658 FQIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 658 ~~~itGpN~~GKSTllr~i~~ 678 (888)
-++|.|+.++|||||++.+..
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~ 27 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQV 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999899999999967
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=84.31 E-value=0.32 Score=22.08 Aligned_cols=21 Identities=29% Similarity=0.295 Sum_probs=18.5
Q ss_pred EEEEEECCCCCHHHHHHHHHH
Q ss_conf 799991599871579844447
Q 002722 658 FQIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 658 ~~~itGpN~~GKSTllr~i~~ 678 (888)
.++|.|+-++|||||++.+..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~ 22 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVK 22 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899999999989999999967
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=84.19 E-value=0.74 Score=19.69 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=26.2
Q ss_pred CCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 4875345799707999915998715798444477
Q 002722 646 PNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVN 679 (888)
Q Consensus 646 ~n~~~~~~~~~~~~~itGpN~~GKSTllr~i~~~ 679 (888)
.-|.-+.+..|+-..|.|+.|.|||+++.++...
T Consensus 57 ~ID~l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~ 90 (276)
T d1fx0a3 57 AIDAMIPVGRGQRELIIGDRQTGKTAVATDTILN 90 (276)
T ss_dssp TTTTTSCCBTTCBCBEEESSSSSHHHHHHHHHHT
T ss_pred EEECCCCCCCCCEEEECCCCCCCHHHHHHHHHHH
T ss_conf 7750145467766760067788857999997765
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.19 E-value=0.33 Score=22.02 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=19.4
Q ss_pred EEEEEEECCCCCHHHHHHHHHH
Q ss_conf 0799991599871579844447
Q 002722 657 WFQIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 657 ~~~~itGpN~~GKSTllr~i~~ 678 (888)
..++|.|+-++|||||++.+..
T Consensus 4 p~V~lvG~~n~GKTSLln~l~~ 25 (209)
T d1nrjb_ 4 PSIIIAGPQNSGKTSLLTLLTT 25 (209)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHC
T ss_conf 8999999999889999999967
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=84.04 E-value=0.31 Score=22.16 Aligned_cols=22 Identities=18% Similarity=0.158 Sum_probs=18.9
Q ss_pred EEEEEEECCCCCHHHHHHHHHH
Q ss_conf 0799991599871579844447
Q 002722 657 WFQIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 657 ~~~~itGpN~~GKSTllr~i~~ 678 (888)
--++|.|..|+||||+++.+.+
T Consensus 33 l~I~LvG~tg~GKSSliN~ilg 54 (257)
T d1h65a_ 33 LTILVMGKGGVGKSSTVNSIIG 54 (257)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHC
T ss_conf 4899989999869999999858
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=84.03 E-value=0.28 Score=22.47 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=18.8
Q ss_pred CEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 70799991599871579844447
Q 002722 656 SWFQIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 656 ~~~~~itGpN~~GKSTllr~i~~ 678 (888)
.--+++.|+.++||||+++.+..
T Consensus 12 ~~kIvlvG~~~vGKTSli~rl~~ 34 (173)
T d1e0sa_ 12 EMRILMLGLDAAGKTTILYKLKL 34 (173)
T ss_dssp CEEEEEEEETTSSHHHHHHHTTC
T ss_pred EEEEEEECCCCCCHHHHHHHHHC
T ss_conf 47999999999878999999844
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=84.01 E-value=0.42 Score=21.31 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=19.5
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 9970799991599871579844447
Q 002722 654 GKSWFQIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 654 ~~~~~~~itGpN~~GKSTllr~i~~ 678 (888)
.+.--+++.|+.++||||+++.+..
T Consensus 15 ~k~~KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 15 NKELRILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHC
T ss_conf 9668999999999988999988733
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=83.91 E-value=0.33 Score=22.00 Aligned_cols=21 Identities=33% Similarity=0.322 Sum_probs=18.3
Q ss_pred EEEEEECCCCCHHHHHHHHHH
Q ss_conf 799991599871579844447
Q 002722 658 FQIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 658 ~~~itGpN~~GKSTllr~i~~ 678 (888)
-++|.|+.++|||||++.+..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~ 22 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTG 22 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899999999889999999968
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.41 E-value=0.35 Score=21.79 Aligned_cols=20 Identities=20% Similarity=0.232 Sum_probs=17.2
Q ss_pred EEEEECCCCCHHHHHHHHHH
Q ss_conf 99991599871579844447
Q 002722 659 QIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 659 ~~itGpN~~GKSTllr~i~~ 678 (888)
+++.|+.++|||||++++..
T Consensus 5 i~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999678999999986
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.11 E-value=0.37 Score=21.66 Aligned_cols=20 Identities=25% Similarity=0.255 Sum_probs=17.9
Q ss_pred EEEEECCCCCHHHHHHHHHH
Q ss_conf 99991599871579844447
Q 002722 659 QIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 659 ~~itGpN~~GKSTllr~i~~ 678 (888)
+++.|+.++|||||++++..
T Consensus 6 i~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999799899999999980
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.96 E-value=0.38 Score=21.61 Aligned_cols=21 Identities=24% Similarity=0.135 Sum_probs=18.6
Q ss_pred EEEEEECCCCCHHHHHHHHHH
Q ss_conf 799991599871579844447
Q 002722 658 FQIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 658 ~~~itGpN~~GKSTllr~i~~ 678 (888)
-++|.|..|+|||||++....
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999999799999999973
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=82.65 E-value=0.32 Score=22.06 Aligned_cols=20 Identities=30% Similarity=0.242 Sum_probs=18.0
Q ss_pred EEEEECCCCCHHHHHHHHHH
Q ss_conf 99991599871579844447
Q 002722 659 QIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 659 ~~itGpN~~GKSTllr~i~~ 678 (888)
++|+|+-++|||||++.+..
T Consensus 4 VaiiG~~nvGKSSLin~L~~ 23 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSS 23 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEE
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99989999879999999968
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=82.53 E-value=0.51 Score=20.77 Aligned_cols=21 Identities=24% Similarity=0.058 Sum_probs=18.0
Q ss_pred CCEEEEEEECCCCCHHHHHHH
Q ss_conf 970799991599871579844
Q 002722 655 KSWFQIITGPNMGGKSTFIRQ 675 (888)
Q Consensus 655 ~~~~~~itGpN~~GKSTllr~ 675 (888)
.|.-++++||.|+||||+.-.
T Consensus 14 ~g~gvli~G~sG~GKS~lal~ 34 (177)
T d1knxa2 14 FGVGVLLTGRSGIGKSECALD 34 (177)
T ss_dssp TTEEEEEEESSSSSHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
T ss_conf 999999981899998999999
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.53 E-value=0.36 Score=21.77 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=18.1
Q ss_pred EEEEEECCCCCHHHHHHHHHH
Q ss_conf 799991599871579844447
Q 002722 658 FQIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 658 ~~~itGpN~~GKSTllr~i~~ 678 (888)
-+++.|+.++|||||++.+..
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999982
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.47 E-value=0.38 Score=21.59 Aligned_cols=20 Identities=25% Similarity=0.302 Sum_probs=17.5
Q ss_pred EEEEECCCCCHHHHHHHHHH
Q ss_conf 99991599871579844447
Q 002722 659 QIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 659 ~~itGpN~~GKSTllr~i~~ 678 (888)
+++.|+.++|||||++++..
T Consensus 5 i~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999698999999970
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=82.24 E-value=0.39 Score=21.49 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=18.4
Q ss_pred EEEEECCCCCHHHHHHHHHHH
Q ss_conf 999915998715798444477
Q 002722 659 QIITGPNMGGKSTFIRQVGVN 679 (888)
Q Consensus 659 ~~itGpN~~GKSTllr~i~~~ 679 (888)
+++.|+.|+|||||++.+...
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999991989999999739
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=82.12 E-value=0.47 Score=21.00 Aligned_cols=22 Identities=32% Similarity=0.285 Sum_probs=19.6
Q ss_pred EEEEEEECCCCCHHHHHHHHHH
Q ss_conf 0799991599871579844447
Q 002722 657 WFQIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 657 ~~~~itGpN~~GKSTllr~i~~ 678 (888)
.+++|.|+-++||||+++.+..
T Consensus 6 ~~I~lvG~~~~GKSSLin~l~~ 27 (178)
T d1wf3a1 6 GFVAIVGKPNVGKSTLLNNLLG 27 (178)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHC
T ss_conf 6999999999999999999968
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.90 E-value=0.44 Score=21.18 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=17.8
Q ss_pred EEEEEECCCCCHHHHHHHHHH
Q ss_conf 799991599871579844447
Q 002722 658 FQIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 658 ~~~itGpN~~GKSTllr~i~~ 678 (888)
-++|.|+.|+|||+|+++...
T Consensus 4 KivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899388999999971
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=81.80 E-value=0.45 Score=21.08 Aligned_cols=21 Identities=29% Similarity=0.139 Sum_probs=17.7
Q ss_pred CCEEEEEEECCCCCHHHHHHH
Q ss_conf 970799991599871579844
Q 002722 655 KSWFQIITGPNMGGKSTFIRQ 675 (888)
Q Consensus 655 ~~~~~~itGpN~~GKSTllr~ 675 (888)
.|.-++++||.|+||||+.-.
T Consensus 13 ~g~gvl~~G~sG~GKStlal~ 33 (176)
T d1kkma_ 13 YGLGVLITGDSGVGKSETALE 33 (176)
T ss_dssp TTEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEEECCCCCHHHHHHH
T ss_conf 999999980899998999999
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=81.75 E-value=0.43 Score=21.24 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=18.8
Q ss_pred EEEEEEECCCCCHHHHHHHHHH
Q ss_conf 0799991599871579844447
Q 002722 657 WFQIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 657 ~~~~itGpN~~GKSTllr~i~~ 678 (888)
--+++.|+.++|||||++.+..
T Consensus 17 ~kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 17 VRILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHHC
T ss_conf 7999999999899999999964
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.67 E-value=0.45 Score=21.10 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=18.8
Q ss_pred EEEEEECCCCCHHHHHHHHHHH
Q ss_conf 7999915998715798444477
Q 002722 658 FQIITGPNMGGKSTFIRQVGVN 679 (888)
Q Consensus 658 ~~~itGpN~~GKSTllr~i~~~ 679 (888)
-+++.|+.++|||||++.+...
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=81.65 E-value=0.56 Score=20.50 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=18.5
Q ss_pred EEEEEECCCCCHHHHHHHHHH
Q ss_conf 799991599871579844447
Q 002722 658 FQIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 658 ~~~itGpN~~GKSTllr~i~~ 678 (888)
-+++.|+-++|||||++++..
T Consensus 3 kI~lvG~~nvGKSsLin~l~~ 23 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAG 23 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999989999989999999968
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.49 E-value=0.42 Score=21.27 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=17.4
Q ss_pred EEEEECCCCCHHHHHHHHHH
Q ss_conf 99991599871579844447
Q 002722 659 QIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 659 ~~itGpN~~GKSTllr~i~~ 678 (888)
+++.|+.++|||||++.+..
T Consensus 8 i~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999198999999961
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.42 E-value=0.43 Score=21.24 Aligned_cols=20 Identities=35% Similarity=0.305 Sum_probs=17.4
Q ss_pred EEEEECCCCCHHHHHHHHHH
Q ss_conf 99991599871579844447
Q 002722 659 QIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 659 ~~itGpN~~GKSTllr~i~~ 678 (888)
+++.|+.++|||||++.+..
T Consensus 6 ivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999399999999962
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.32 E-value=0.47 Score=20.97 Aligned_cols=20 Identities=20% Similarity=0.275 Sum_probs=17.9
Q ss_pred EEEEECCCCCHHHHHHHHHH
Q ss_conf 99991599871579844447
Q 002722 659 QIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 659 ~~itGpN~~GKSTllr~i~~ 678 (888)
++|.|+-++|||||++++..
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999098999999961
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=81.20 E-value=0.45 Score=21.10 Aligned_cols=21 Identities=29% Similarity=0.189 Sum_probs=18.1
Q ss_pred EEEEEECCCCCHHHHHHHHHH
Q ss_conf 799991599871579844447
Q 002722 658 FQIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 658 ~~~itGpN~~GKSTllr~i~~ 678 (888)
-++|.|+-++|||||++.+..
T Consensus 10 kV~iiG~~~~GKSTLin~l~~ 30 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILN 30 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899999999999999999977
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=81.01 E-value=0.7 Score=19.84 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=20.4
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 970799991599871579844447
Q 002722 655 KSWFQIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 655 ~~~~~~itGpN~~GKSTllr~i~~ 678 (888)
...-++|.|+-++|||||++.+..
T Consensus 15 ~~~~I~lvG~~NvGKSSL~n~L~~ 38 (188)
T d1puia_ 15 TGIEVAFAGRSNAGKSSALNTLTN 38 (188)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 697899988999989999999858
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.34 E-value=0.5 Score=20.80 Aligned_cols=20 Identities=25% Similarity=0.316 Sum_probs=17.9
Q ss_pred EEEEECCCCCHHHHHHHHHH
Q ss_conf 99991599871579844447
Q 002722 659 QIITGPNMGGKSTFIRQVGV 678 (888)
Q Consensus 659 ~~itGpN~~GKSTllr~i~~ 678 (888)
+++.|+.++|||||++++..
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999799999999984
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=80.11 E-value=0.61 Score=20.26 Aligned_cols=21 Identities=29% Similarity=0.090 Sum_probs=17.5
Q ss_pred CCEEEEEEECCCCCHHHHHHH
Q ss_conf 970799991599871579844
Q 002722 655 KSWFQIITGPNMGGKSTFIRQ 675 (888)
Q Consensus 655 ~~~~~~itGpN~~GKSTllr~ 675 (888)
.|.-++|+|+.|+||||+.-.
T Consensus 14 ~g~gvli~G~sg~GKS~la~~ 34 (169)
T d1ko7a2 14 YGVGVLITGDSGIGKSETALE 34 (169)
T ss_dssp TTEEEEEEESTTSSHHHHHHH
T ss_pred CCEEEEEEECCCCCHHHHHHH
T ss_conf 999999980899999999999
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.05 E-value=0.47 Score=20.98 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=18.5
Q ss_pred EEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 79999159987157984444778
Q 002722 658 FQIITGPNMGGKSTFIRQVGVNI 680 (888)
Q Consensus 658 ~~~itGpN~~GKSTllr~i~~~~ 680 (888)
-+++.|+.++|||||+++...-.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~~ 27 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTGE 27 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC---
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999908899999998498
|