Citrus Sinensis ID: 002729

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------
Protein Sequence
MHMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVS
Secondary Structure (PSIPRED)
cHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccEEEEEEEcccccccHHHHHHHHccccEEEcccccHHHHHHHHHHccccEEEEccccccccHHHHHHcccccEEEcccccccccccccccEEEEccccccccccccccccEEEcccccccccccccccccccccccccccccccccccEEEEEccccccccHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHcccccccEEEcccccHHHHHHHcccccEEccccccccccHHHHHHHHcccEEcccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcHHHHHHccccccccHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEEEcccccccHHHHHHHHHHHHcccccEEEEEEEccccccHHHHHHHHHHHcccEcHccccHHHHHHHHHHcccEEEEEcccccccccccEEEcccccEEEEEEccccccccccEEEEEEccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEEEEccccccccHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHccccHHHEEEcccccHHHHHHHHHHccEEcccccccccccHHHHHHccccEEEcccccHHHHHHHHHHHHcccccHHccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccHHHcc
Coil and Loop (DISEMBL)
MHMALAHQMYKSGSYKQALEHsnsvyernplrtdnLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVklkptfpdayLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQclslqpshpqaltnlgniymeWNMLPAAASYYKATLAVTtglsapfnNLAVIYKQQGNYADAISCYnevlridplaadglvnrgntykeIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALllrpdfpeaTCNLLHTLQCVCSWEDRDRMFSEVEGIIRRqvnmsvlpsvqpfhaiaypidPMLALEISRKYASHCSIiasrfalppfnhpvpipirldgglrrlrvgyvssdfgnhplshlmgsvfgmhnkENVEVFCYalspndgtewRQRTQSEAEHFVDVSAMSSDMIAKLINEDKIQILINLngytkgarneifamqpapiqvsymgfpgttgasyIDYLvtdefvsplryahiyseklvhvphcyfvndykqknmdvldpncqpkrsdyglpedKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAqgvqpdqiifTDVAMKQEHIRRssladlfldtplcnahttgtdilwaglpmitlpLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSvrltcplfdtarwvs
Flexible Loop (DISEMBL)
MHMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNrgntykeigrvtDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASrfalppfnhpVPIPIRLDGGLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALtnklksvrltcplfdtarwvs
Low Complexity Region (SEG)
MHMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIrldgglrrlrvgYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVS
Disordered region (IsUnstruct)
*************************YERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEW*********HFVDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARW**
Disordered Region (DISOPRED)
MHMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWV*
Disordered Region (DISEMBL)
********MYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVS
Disordered Region (DISPRO)
MHMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALP**************GLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDT*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSxxxxxxxxxxxxxxxxxxxxxTNKLKSVRLTCPLFDTARWVS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	887	2.2.26 [Sep-21-2011]
Q9M8Y0	977	Probable UDP-N-acetylgluc	yes	no	0.996	0.904	0.861	0.0
P56558	1036	UDP-N-acetylglucosamine--	yes	no	0.766	0.656	0.450	1e-171
Q8CGY8	1046	UDP-N-acetylglucosamine--	yes	no	0.766	0.650	0.450	1e-171
Q27HV0	1046	UDP-N-acetylglucosamine--	yes	no	0.766	0.650	0.450	1e-171
O15294	1046	UDP-N-acetylglucosamine--	yes	no	0.766	0.650	0.450	1e-171
P81436	1046	UDP-N-acetylglucosamine--	yes	no	0.766	0.650	0.450	1e-171
O18158	1151	UDP-N-acetylglucosamine--	yes	no	0.770	0.593	0.449	1e-164
O82039	932	Probable UDP-N-acetylgluc	N/A	no	0.807	0.768	0.272	6e-73
Q8RVB2	931	Probable UDP-N-acetylgluc	N/A	no	0.810	0.772	0.269	2e-69
Q6YZI0	927	Probable UDP-N-acetylgluc	no	no	0.799	0.764	0.267	2e-68

>sp|Q9M8Y0|SEC_ARATH Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC OS=Arabidopsis thaliana GN=SEC PE=2 SV=1

 Score = 1635 bits (4234), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 762/885 (86%), Positives = 828/885 (93%), Gaps = 1/885 (0%)

Query: 3   MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRL 62
           +ALAHQ+YK G +KQALEHSN VY+RNPLRTDNLLL+GAIYYQL +YDMCIARNEEALR+
Sbjct: 57  LALAHQLYKGGDFKQALEHSNMVYQRNPLRTDNLLLIGAIYYQLQEYDMCIARNEEALRI 116

Query: 63  EPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQ 122
           +P+FAECYGNMANAWKEKGD D AIRYYL+AIELRPNFADAWSNLASAYMRKGRL+EA Q
Sbjct: 117 QPQFAECYGNMANAWKEKGDTDRAIRYYLIAIELRPNFADAWSNLASAYMRKGRLSEATQ 176

Query: 123 CCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMES 182
           CC+QAL+LNPLLVDAHSNLGNLMKAQGL+ EAYSCYLEA+RIQPTFAIAWSNLAGLFMES
Sbjct: 177 CCQQALSLNPLLVDAHSNLGNLMKAQGLIHEAYSCYLEAVRIQPTFAIAWSNLAGLFMES 236

Query: 183 GDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGN 241
           GDLNRALQYYKEAVKLKP FPDAYLNLGNVYKALG P EAIMCYQ A+Q RPN A+AFGN
Sbjct: 237 GDLNRALQYYKEAVKLKPAFPDAYLNLGNVYKALGRPTEAIMCYQHALQMRPNSAMAFGN 296

Query: 242 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP 301
           +AS YYE+GQ D+AI +YKQA+  DPRFLEAYNNLGNALKD+GRVDEA++CYNQCL+LQP
Sbjct: 297 IASIYYEQGQLDLAIRHYKQALSRDPRFLEAYNNLGNALKDIGRVDEAVRCYNQCLALQP 356

Query: 302 SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCY 361
           +HPQA+ NLGNIYMEWNM+  A+S +KATLAVTTGLSAPFNNLA+IYKQQGNY+DAISCY
Sbjct: 357 NHPQAMANLGNIYMEWNMMGPASSLFKATLAVTTGLSAPFNNLAIIYKQQGNYSDAISCY 416

Query: 362 NEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGH 421
           NEVLRIDPLAAD LVNRGNTYKEIGRVT+AIQDY+ AI  RPTMAEAHANLASAYKDSGH
Sbjct: 417 NEVLRIDPLAADALVNRGNTYKEIGRVTEAIQDYMHAINFRPTMAEAHANLASAYKDSGH 476

Query: 422 VEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPS 481
           VEAAI SYKQALLLRPDFPEATCNLLHTLQCVC WEDR +MF+EVE IIRRQ+NMSVLPS
Sbjct: 477 VEAAITSYKQALLLRPDFPEATCNLLHTLQCVCCWEDRSKMFAEVESIIRRQINMSVLPS 536

Query: 482 VQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLRVGY 541
           VQPFHAIAYPIDP+LALEISRKYA+HCSIIASRF LPPF HP  +P++ +GG +RLR+GY
Sbjct: 537 VQPFHAIAYPIDPILALEISRKYAAHCSIIASRFGLPPFTHPAGLPVKREGGFKRLRIGY 596

Query: 542 VSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSS 601
           VSSDFGNHPLSHLMGSVFGMHN+ENVEVFCYALS ND TEWRQR QSEAEHF+DVSAMSS
Sbjct: 597 VSSDFGNHPLSHLMGSVFGMHNRENVEVFCYALSANDNTEWRQRIQSEAEHFLDVSAMSS 656

Query: 602 DMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDE 661
           D IAK+IN+DKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGA+YIDYLVTDE
Sbjct: 657 DAIAKIINQDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGATYIDYLVTDE 716

Query: 662 FVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQ 721
           FVSPL+YAHIYSEKLVH+PHCYFVNDYKQKN DVLDPN +PKRSDYGLPEDKFIFACFNQ
Sbjct: 717 FVSPLQYAHIYSEKLVHLPHCYFVNDYKQKNQDVLDPNSKPKRSDYGLPEDKFIFACFNQ 776

Query: 722 LYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQ 781
           LYKMDPEI NTWCNIL+RVPNSALWLLRFPAAGEMR R YA AQGVQPDQIIFTDVAMK 
Sbjct: 777 LYKMDPEIVNTWCNILKRVPNSALWLLRFPAAGEMRFRTYAAAQGVQPDQIIFTDVAMKS 836

Query: 782 EHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEM 841
           EHIRRS LAD+ LDTPLCN HTTGTD+LWAG+PMITLPLEKMATRVAGSLCLATGLG  M
Sbjct: 837 EHIRRSVLADVILDTPLCNGHTTGTDVLWAGVPMITLPLEKMATRVAGSLCLATGLGHGM 896

Query: 842 IVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWV 886
           IVNS++EYEE+AVSLAL++ KLQALT +L++ RLTCPLFDT RWV
Sbjct: 897 IVNSLEEYEEKAVSLALNKPKLQALTKELRASRLTCPLFDTMRWV 941

O-linked N-acetylglucosamine transferase (OGT) that mediates O-glycosylation of capsid protein (CP) of virus in case of infection by Plum pox virus. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Its OGT activity has been proved in vitro but not in vivo. Required with SPY for gamete and seed development.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: -

>sp|P56558|OGT1_RAT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Rattus norvegicus GN=Ogt PE=1 SV=1

 Score =  603 bits (1554), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 309/686 (45%), Positives = 430/686 (62%), Gaps = 6/686 (0%)

Query: 5   LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64
           LAH+ Y++G ++ A  H   ++ + P  T  LLLL +I++Q    D     +  A++  P
Sbjct: 17  LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 76

Query: 65  RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCC 124
             AE Y N+ N +KE+G +  AI +Y  A+ L+P+F D + NLA+A +  G +  A Q  
Sbjct: 77  LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 136

Query: 125 RQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD 184
             AL  NP L    S+LGNL+KA G ++EA +CYL+A+  QP FA+AWSNL  +F   G+
Sbjct: 137 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 196

Query: 185 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLA 243
           +  A+ ++++AV L P F DAY+NLGNV K   +   A+  Y RA+   PN A+  GNLA
Sbjct: 197 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 256

Query: 244 STYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 303
             YYE+G  D+AI  Y++AI   P F +AY NL NALK+ G V EA  CYN  L L P+H
Sbjct: 257 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 316

Query: 304 PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNE 363
             +L NL NI  E   +  A   Y+  L V    +A  +NLA + +QQG   +A+  Y E
Sbjct: 317 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 376

Query: 364 VLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVE 423
            +RI P  AD   N GNT KE+  V  A+Q Y RAI I P  A+AH+NLAS +KDSG++ 
Sbjct: 377 AIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIP 436

Query: 424 AAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQ 483
            AI SY+ AL L+PDFP+A CNL H LQ VC W D D    ++  I+  Q+  + LPSV 
Sbjct: 437 EAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAEQLEKNRLPSVH 496

Query: 484 PFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLRVGYVS 543
           P H++ YP+       I+ ++ + C    +    PP+ HP  + +  DG   RLRVGYVS
Sbjct: 497 PHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLS-DG---RLRVGYVS 552

Query: 544 SDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSD- 602
           SDFGNHP SHLM S+ GMHN +  EVFCYALSP+DGT +R +  +EA HF+D+S +  + 
Sbjct: 553 SDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNG 612

Query: 603 MIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEF 662
             A  I++D I IL+N+NGYTKGARNE+FA++PAPIQ  ++G+PGT+GA ++DY++TD+ 
Sbjct: 613 KAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQE 672

Query: 663 VSPLRYAHIYSEKLVHVPHCYFVNDY 688
            SP   A  YSEKL ++PH +F+ D+
Sbjct: 673 TSPAEVAEQYSEKLAYMPHTFFIGDH 698

Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 5

EC: 5

>sp|Q8CGY8|OGT1_MOUSE UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Mus musculus GN=Ogt PE=1 SV=2

 Score =  602 bits (1552), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 309/686 (45%), Positives = 430/686 (62%), Gaps = 6/686 (0%)

Query: 5   LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64
           LAH+ Y++G ++ A  H   ++ + P  T  LLLL +I++Q    D     +  A++  P
Sbjct: 27  LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 86

Query: 65  RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCC 124
             AE Y N+ N +KE+G +  AI +Y  A+ L+P+F D + NLA+A +  G +  A Q  
Sbjct: 87  LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 146

Query: 125 RQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD 184
             AL  NP L    S+LGNL+KA G ++EA +CYL+A+  QP FA+AWSNL  +F   G+
Sbjct: 147 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 206

Query: 185 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLA 243
           +  A+ ++++AV L P F DAY+NLGNV K   +   A+  Y RA+   PN A+  GNLA
Sbjct: 207 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 266

Query: 244 STYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 303
             YYE+G  D+AI  Y++AI   P F +AY NL NALK+ G V EA  CYN  L L P+H
Sbjct: 267 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 326

Query: 304 PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNE 363
             +L NL NI  E   +  A   Y+  L V    +A  +NLA + +QQG   +A+  Y E
Sbjct: 327 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 386

Query: 364 VLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVE 423
            +RI P  AD   N GNT KE+  V  A+Q Y RAI I P  A+AH+NLAS +KDSG++ 
Sbjct: 387 AIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIP 446

Query: 424 AAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQ 483
            AI SY+ AL L+PDFP+A CNL H LQ VC W D D    ++  I+  Q+  + LPSV 
Sbjct: 447 EAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAEQLEKNRLPSVH 506

Query: 484 PFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLRVGYVS 543
           P H++ YP+       I+ ++ + C    +    PP+ HP  + +  DG   RLRVGYVS
Sbjct: 507 PHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLS-DG---RLRVGYVS 562

Query: 544 SDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSD- 602
           SDFGNHP SHLM S+ GMHN +  EVFCYALSP+DGT +R +  +EA HF+D+S +  + 
Sbjct: 563 SDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNG 622

Query: 603 MIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEF 662
             A  I++D I IL+N+NGYTKGARNE+FA++PAPIQ  ++G+PGT+GA ++DY++TD+ 
Sbjct: 623 KAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQE 682

Query: 663 VSPLRYAHIYSEKLVHVPHCYFVNDY 688
            SP   A  YSEKL ++PH +F+ D+
Sbjct: 683 TSPAEVAEQYSEKLAYMPHTFFIGDH 708

Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 5

EC: 5

>sp|Q27HV0|OGT1_PIG UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Sus scrofa GN=OGT PE=2 SV=1

 Score =  602 bits (1552), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 309/686 (45%), Positives = 430/686 (62%), Gaps = 6/686 (0%)

Query: 5   LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64
           LAH+ Y++G ++ A  H   ++ + P  T  LLLL +I++Q    D     +  A++  P
Sbjct: 27  LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 86

Query: 65  RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCC 124
             AE Y N+ N +KE+G +  AI +Y  A+ L+P+F D + NLA+A +  G +  A Q  
Sbjct: 87  LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 146

Query: 125 RQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD 184
             AL  NP L    S+LGNL+KA G ++EA +CYL+A+  QP FA+AWSNL  +F   G+
Sbjct: 147 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 206

Query: 185 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLA 243
           +  A+ ++++AV L P F DAY+NLGNV K   +   A+  Y RA+   PN A+  GNLA
Sbjct: 207 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 266

Query: 244 STYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 303
             YYE+G  D+AI  Y++AI   P F +AY NL NALK+ G V EA  CYN  L L P+H
Sbjct: 267 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 326

Query: 304 PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNE 363
             +L NL NI  E   +  A   Y+  L V    +A  +NLA + +QQG   +A+  Y E
Sbjct: 327 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 386

Query: 364 VLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVE 423
            +RI P  AD   N GNT KE+  V  A+Q Y RAI I P  A+AH+NLAS +KDSG++ 
Sbjct: 387 AIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIP 446

Query: 424 AAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQ 483
            AI SY+ AL L+PDFP+A CNL H LQ VC W D D    ++  I+  Q+  + LPSV 
Sbjct: 447 EAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVH 506

Query: 484 PFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLRVGYVS 543
           P H++ YP+       I+ ++ + C    +    PP+ HP  + +  DG   RLRVGYVS
Sbjct: 507 PHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLS-DG---RLRVGYVS 562

Query: 544 SDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSD- 602
           SDFGNHP SHLM S+ GMHN +  EVFCYALSP+DGT +R +  +EA HF+D+S +  + 
Sbjct: 563 SDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNG 622

Query: 603 MIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEF 662
             A  I++D I IL+N+NGYTKGARNE+FA++PAPIQ  ++G+PGT+GA ++DY++TD+ 
Sbjct: 623 KAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQE 682

Query: 663 VSPLRYAHIYSEKLVHVPHCYFVNDY 688
            SP   A  YSEKL ++PH +F+ D+
Sbjct: 683 TSPAEVAEQYSEKLAYMPHTFFIGDH 708

Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues.

Sus scrofa (taxid: 9823)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 5

EC: 5

>sp|O15294|OGT1_HUMAN UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Homo sapiens GN=OGT PE=1 SV=3

 Score =  602 bits (1551), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 309/686 (45%), Positives = 430/686 (62%), Gaps = 6/686 (0%)

Query: 5   LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64
           LAH+ Y++G ++ A  H   ++ + P  T  LLLL +I++Q    D     +  A++  P
Sbjct: 27  LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 86

Query: 65  RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCC 124
             AE Y N+ N +KE+G +  AI +Y  A+ L+P+F D + NLA+A +  G +  A Q  
Sbjct: 87  LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 146

Query: 125 RQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD 184
             AL  NP L    S+LGNL+KA G ++EA +CYL+A+  QP FA+AWSNL  +F   G+
Sbjct: 147 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 206

Query: 185 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLA 243
           +  A+ ++++AV L P F DAY+NLGNV K   +   A+  Y RA+   PN A+  GNLA
Sbjct: 207 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 266

Query: 244 STYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 303
             YYE+G  D+AI  Y++AI   P F +AY NL NALK+ G V EA  CYN  L L P+H
Sbjct: 267 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 326

Query: 304 PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNE 363
             +L NL NI  E   +  A   Y+  L V    +A  +NLA + +QQG   +A+  Y E
Sbjct: 327 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 386

Query: 364 VLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVE 423
            +RI P  AD   N GNT KE+  V  A+Q Y RAI I P  A+AH+NLAS +KDSG++ 
Sbjct: 387 AIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIP 446

Query: 424 AAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQ 483
            AI SY+ AL L+PDFP+A CNL H LQ VC W D D    ++  I+  Q+  + LPSV 
Sbjct: 447 EAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVH 506

Query: 484 PFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLRVGYVS 543
           P H++ YP+       I+ ++ + C    +    PP+ HP  + +  DG   RLRVGYVS
Sbjct: 507 PHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLS-DG---RLRVGYVS 562

Query: 544 SDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSD- 602
           SDFGNHP SHLM S+ GMHN +  EVFCYALSP+DGT +R +  +EA HF+D+S +  + 
Sbjct: 563 SDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNG 622

Query: 603 MIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEF 662
             A  I++D I IL+N+NGYTKGARNE+FA++PAPIQ  ++G+PGT+GA ++DY++TD+ 
Sbjct: 623 KAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQE 682

Query: 663 VSPLRYAHIYSEKLVHVPHCYFVNDY 688
            SP   A  YSEKL ++PH +F+ D+
Sbjct: 683 TSPAEVAEQYSEKLAYMPHTFFIGDH 708

Isoform 2, the mitochondrial isoform (mOGT), is cytotoxic and triggers apoptosis in several cell types including INS1, an insulinoma cell line.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 5

EC: 5

>sp|P81436|OGT1_RABIT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Oryctolagus cuniculus GN=OGT PE=1 SV=2

 Score =  602 bits (1551), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 309/686 (45%), Positives = 430/686 (62%), Gaps = 6/686 (0%)

Query: 5   LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64
           LAH+ Y++G ++ A  H   ++ + P  T  LLLL +I++Q    D     +  A++  P
Sbjct: 27  LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 86

Query: 65  RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCC 124
             AE Y N+ N +KE+G +  AI +Y  A+ L+P+F D + NLA+A +  G +  A Q  
Sbjct: 87  LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 146

Query: 125 RQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD 184
             AL  NP L    S+LGNL+KA G ++EA +CYL+A+  QP FA+AWSNL  +F   G+
Sbjct: 147 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 206

Query: 185 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLA 243
           +  A+ ++++AV L P F DAY+NLGNV K   +   A+  Y RA+   PN A+  GNLA
Sbjct: 207 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 266

Query: 244 STYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 303
             YYE+G  D+AI  Y++AI   P F +AY NL NALK+ G V EA  CYN  L L P+H
Sbjct: 267 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 326

Query: 304 PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNE 363
             +L NL NI  E   +  A   Y+  L V    +A  +NLA + +QQG   +A+  Y E
Sbjct: 327 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 386

Query: 364 VLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVE 423
            +RI P  AD   N GNT KE+  V  A+Q Y RAI I P  A+AH+NLAS +KDSG++ 
Sbjct: 387 AIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIP 446

Query: 424 AAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQ 483
            AI SY+ AL L+PDFP+A CNL H LQ VC W D D    ++  I+  Q+  + LPSV 
Sbjct: 447 EAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVH 506

Query: 484 PFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLRVGYVS 543
           P H++ YP+       I+ ++ + C    +    PP+ HP  + +  DG   RLRVGYVS
Sbjct: 507 PHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLS-DG---RLRVGYVS 562

Query: 544 SDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSD- 602
           SDFGNHP SHLM S+ GMHN +  EVFCYALSP+DGT +R +  +EA HF+D+S +  + 
Sbjct: 563 SDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNG 622

Query: 603 MIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEF 662
             A  I++D I IL+N+NGYTKGARNE+FA++PAPIQ  ++G+PGT+GA ++DY++TD+ 
Sbjct: 623 KAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQE 682

Query: 663 VSPLRYAHIYSEKLVHVPHCYFVNDY 688
            SP   A  YSEKL ++PH +F+ D+
Sbjct: 683 TSPAEVAEQYSEKLAYMPHTFFIGDH 708

Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues.

Oryctolagus cuniculus (taxid: 9986)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 5

EC: 5

>sp|O18158|OGT1_CAEEL UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase OS=Caenorhabditis elegans GN=ogt-1 PE=1 SV=2

 Score =  580 bits (1494), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 310/690 (44%), Positives = 437/690 (63%), Gaps = 7/690 (1%)

Query: 5   LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64
           LAH+ ++SG+Y +A ++ N V++ +P     LLLL AI +Q  + +  +  +  A+++  
Sbjct: 131 LAHRQFQSGNYVEAEKYCNLVFQSDPNNLPTLLLLSAINFQTKNLEKSMQYSMLAIKVNN 190

Query: 65  RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCC 124
           + AE Y N+ N +KEKG +  A+  Y +A++L+P F DA+ NLA+A +  G L +A    
Sbjct: 191 QCAEAYSNLGNYYKEKGQLQDALENYKLAVKLKPEFIDAYINLAAALVSGGDLEQAVTAY 250

Query: 125 RQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD 184
             AL +NP L    S+LGNL+KA G ++EA  CYL+A+  QP FA+AWSNL  +F   G+
Sbjct: 251 FNALQINPDLYCVRSDLGNLLKAMGRLEEAKVCYLKAIETQPQFAVAWSNLGCVFNSQGE 310

Query: 185 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLA 243
           +  A+ ++++AV L P F DAY+NLGNV K   +   A+  Y RA+    N A+  GNLA
Sbjct: 311 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVSAYLRALNLSGNHAVVHGNLA 370

Query: 244 STYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 303
             YYE+G  D+AI  YK+AI   P F +AY NL NALK+ G V EA Q Y + L L P+H
Sbjct: 371 CVYYEQGLIDLAIDTYKKAIDLQPHFPDAYCNLANALKEKGSVVEAEQMYMKALELCPTH 430

Query: 304 PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNE 363
             +  NL NI  E   +  A   Y   L +    +A  +NLA I +QQG   DAI  Y E
Sbjct: 431 ADSQNNLANIKREQGKIEDATRLYLKALEIYPEFAAAHSNLASILQQQGKLNDAILHYKE 490

Query: 364 VLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVE 423
            +RI P  AD   N GNT KE+G  + AI  Y RAI I P  A+AH+NLAS +KD+G++ 
Sbjct: 491 AIRIAPTFADAYSNMGNTLKEMGDSSAAIACYNRAIQINPAFADAHSNLASIHKDAGNMA 550

Query: 424 AAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQ 483
            AI+SY  AL L+PDFP+A CNL H  Q +C W D D+   ++  I+  Q+    LPSV 
Sbjct: 551 EAIQSYSTALKLKPDFPDAYCNLAHCHQIICDWNDYDKRVRKLVQIVEDQLCKKRLPSVH 610

Query: 484 PFHAIAYPIDPMLALEISRKYASHC--SIIASRFALPPFNHPVPIPIRLDGGLRRLRVGY 541
           P H++ YP+     + I+ K+AS C   +        P  H     ++ +G  +RLR+GY
Sbjct: 611 PHHSMLYPLSHAARIAIAAKHASLCFDKVHVQMLGKTPLIHADRFSVQ-NG--QRLRIGY 667

Query: 542 VSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSS 601
           VSSDFGNHP SHLM S+ GMH++  VEVFCYALS NDGT +R +  +E+EHFVD+S +  
Sbjct: 668 VSSDFGNHPTSHLMQSIPGMHDRSRVEVFCYALSVNDGTNFRSKLMNESEHFVDLSQIPC 727

Query: 602 D-MIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTD 660
           +   A+ I +D I ILIN+NGYTKGARNEIFA++PAPIQV ++G+P T+GA+++DY++TD
Sbjct: 728 NGKAAEKIAQDGIHILINMNGYTKGARNEIFALRPAPIQVMWLGYPSTSGATFMDYIITD 787

Query: 661 EFVSPLRYAHIYSEKLVHVPHCYFVNDYKQ 690
              SPLR A+ ++EKL ++PH +F+ D+ Q
Sbjct: 788 AVTSPLRLANAFTEKLAYMPHTFFIGDHAQ 817

Addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|O82039|SPY_PETHY Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Petunia hybrida GN=SPY PE=2 SV=1

 Score =  276 bits (706), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 216/794 (27%), Positives = 351/794 (44%), Gaps = 78/794 (9%)

Query: 115 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF------ 168
           GRL  A +   +A+ L+P    A ++ G L K +G + EA   Y +AL+  P++      
Sbjct: 98  GRL--AFESFAEAIKLDPQNACALTHCGILYKDEGRLVEAAESYQKALKADPSYKPAAEC 155

Query: 169 -AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQ 227
            AI  +++      +G+    +Q Y EA+K+   +  AY NLG VY  +     A+ CY+
Sbjct: 156 LAIVLTDIGTSLKLAGNSQEGIQKYYEAIKIDSHYAPAYYNLGVVYSEMMQYDMALNCYE 215

Query: 228 RAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGR- 285
           +A   RP  A A+ N+   Y  RG  + AI  Y++ +   P F  A NN+  AL D+G  
Sbjct: 216 KAAIERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 275

Query: 286 ------VDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSA 339
                 +++ +  Y + L     +  A+ NLG  Y E      A  +Y+         + 
Sbjct: 276 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE 335

Query: 340 PFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAI 399
             NNL VIYK + N   A+ CY   L I P  +  L N G  Y   G++  A     +AI
Sbjct: 336 ACNNLGVIYKDRDNLDKAVECYQMALTIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAI 395

Query: 400 TIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDR 459
              PT AEA+ NL   Y+D+G++  AI++Y+Q L + PD   A  N L  +  +    D 
Sbjct: 396 IANPTYAEAYNNLGVLYRDAGNISLAIEAYEQCLKIDPDSRNAGQNRLLAMNYINEGSD- 454

Query: 460 DRMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPP 519
           D+++        R      +   Q +++     DP                         
Sbjct: 455 DKLYEA-----HRDWGWRFMRLYQQYNSWDNSKDPE------------------------ 485

Query: 520 FNHPVPIPIRLDGGLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCY-ALSPND 578
                          R+L +GYVS D+  H +S+ + +    H+  N +V  Y A+   D
Sbjct: 486 ---------------RQLVIGYVSPDYFTHSVSYFIEAPLAYHDYANYKVVIYSAVVKAD 530

Query: 579 G--TEWRQRTQSEAEHFVDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPA 636
                +R +   +   + D+  +    ++ +I EDK+ I+I L G+T   +  + A +PA
Sbjct: 531 AKTNRFRDKVLKKGGVWRDIYGIDEKKVSSMIREDKVDIMIELTGHTANNKLGMMACRPA 590

Query: 637 PIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVL 696
           P+QV+++G+P TTG   IDY +TD    P      + E+LV +P  +             
Sbjct: 591 PVQVTWIGYPNTTGLPTIDYRITDSMADPPSTKQKHVEELVRLPDSFLCY--------TP 642

Query: 697 DPNCQPKRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFP-AAGE 755
            P   P      L      F  FN L K+ P++   W  IL  VP+S L +   P     
Sbjct: 643 SPEAGPVSPAPALTNGFVTFGSFNNLAKITPKVLQVWARILCAVPHSRLIVKCKPFGCDS 702

Query: 756 MRLRAYAVAQ--GVQPDQIIFTD-VAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAG 812
           +R R  ++ +  G++P ++     + +  +H++  SL D+ LDT      TT  + L+ G
Sbjct: 703 VRQRFLSILEQLGLEPQRVDLVPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMG 762

Query: 813 LPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKS 872
           +P +T+     A  V  SL    GL  +++  +  EY E A+ LA D   L  L   L+ 
Sbjct: 763 VPCVTMGGSVHAHNVGVSLLKTVGL-RKLVARNEDEYVELAIQLASDVTSLSNLRMSLRE 821

Query: 873 VRLTCPLFDTARWV 886
           +    PL D A++ 
Sbjct: 822 LMAKSPLCDGAQFT 835

Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins.

Petunia hybrida (taxid: 4102)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q8RVB2|SPY_SOLLC Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Solanum lycopersicum GN=SPY PE=2 SV=1

 Score =  264 bits (674), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 213/791 (26%), Positives = 345/791 (43%), Gaps = 72/791 (9%)

Query: 115 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF------ 168
           GRL  A +   +A+ ++P    A ++ G L K +G + EA   Y +AL+  P++      
Sbjct: 98  GRL--AFESFSEAIKVDPQNACALTHCGILYKDEGRLVEAAESYEKALKADPSYTPAAEC 155

Query: 169 -AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQ 227
            AI  +++      +G+    +Q Y EA+K+   +  AY NLG VY  +     A+ CY+
Sbjct: 156 LAIVLTDIGTSLKLAGNTQEGIQKYYEAIKIDSHYAPAYYNLGVVYSEMMQYDMALNCYE 215

Query: 228 RAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGR- 285
           +A   RP  A A+ N+   +  RG  + AI  Y++ +   P F  A NN+  AL D+G  
Sbjct: 216 KAALERPMYAEAYCNMGVIFKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 275

Query: 286 ------VDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSA 339
                 +++ +  Y + L     +  A+ NLG  Y E      A  +Y+         + 
Sbjct: 276 VKLEGDINQGVAYYKKALCYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE 335

Query: 340 PFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAI 399
             NNL VIYK + N   A+ CY   L I P  +  L N G  Y   G++  A     +AI
Sbjct: 336 ACNNLGVIYKDRDNLDKAVECYQLALSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAI 395

Query: 400 TIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDR 459
              PT AEA+ NL   Y+D+G++  AI++Y+Q L + PD   A  N L  +  +    D 
Sbjct: 396 IANPTYAEAYNNLGVLYRDAGNISLAIEAYEQCLKIDPDSRNAGQNRLLAMNYINEGTD- 454

Query: 460 DRMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPP 519
           D+++       RR   M + P    +     P  P++   +S  Y               
Sbjct: 455 DKLYEAHRDWGRRF--MKLYPQYTSWDNSKVPERPLVIGYVSPDY--------------- 497

Query: 520 FNHPVPIPIRLDGGLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDG 579
           F H V                   S F   PL+H         N + V       +    
Sbjct: 498 FTHSV-------------------SYFIEAPLAH-----HDYTNYKVVVYSSVVKADAKT 533

Query: 580 TEWRQRTQSEAEHFVDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQ 639
             +R +   +   + D+  +    ++ +I EDK+ I++ L G+T   +    A +PAP+Q
Sbjct: 534 NRFRDKVMKKGGLWRDIYGIDEKKVSSMIREDKVDIMVELTGHTANNKLGTMACRPAPVQ 593

Query: 640 VSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPN 699
           V+++G+P TTG   IDY +TD    P      + E+LV +P+ +              P 
Sbjct: 594 VTWIGYPNTTGLPTIDYRITDAMADPPNAKQKHVEELVRLPNSFLCY--------TPSPE 645

Query: 700 CQPKRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFP-AAGEMRL 758
             P      L      F  FN L K+ P++   W  IL  VP+S L +   P     +R 
Sbjct: 646 AGPVCPAPALSNGFVTFGSFNNLAKITPKVLKVWARILSAVPHSRLIVKCKPFCCDSVRQ 705

Query: 759 RAYAVAQ--GVQPDQI-IFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPM 815
           R  ++ +  G++P ++ +   + +  +H++  SL D+ LDT      TT  + L+ G+P 
Sbjct: 706 RFLSILEQLGLEPQRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPC 765

Query: 816 ITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRL 875
           +T+     A  V  SL    GL E ++  +  EY E A+ LA D   L  L   L+ +  
Sbjct: 766 VTMGGSVHAHNVGVSLLKTVGL-ENLVARNEDEYVESAIQLASDVTSLSNLRMSLRELMS 824

Query: 876 TCPLFDTARWV 886
             PL D A++ 
Sbjct: 825 KSPLCDGAKFT 835

Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q6YZI0|SPY_ORYSJ Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Oryza sativa subsp. japonica GN=SPY PE=3 SV=1

 Score =  261 bits (666), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 210/785 (26%), Positives = 346/785 (44%), Gaps = 76/785 (9%)

Query: 119 EAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF-------AIA 171
           +A +C  +A+ ++P    A +  G + K +G + EA   Y +A    P++       AI 
Sbjct: 86  QAIECFNEAVRIDPGNACALTYCGMIYKDEGHLVEAAEAYQKARNADPSYKPAAEFLAIV 145

Query: 172 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 231
            ++L      +G+    +Q Y EA+++   +  AY NLG VY  +     A+ CY++A  
Sbjct: 146 LTDLGTSLKLAGNTEEGIQKYCEALEVDSHYAPAYYNLGVVYSEMMQFDLALTCYEKAAL 205

Query: 232 TRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGR----- 285
            RP  A A+ N+   Y  RG+ + AI  Y++ +   P F  A NN+  AL D+G      
Sbjct: 206 ERPLYAEAYCNMGVIYKNRGELEAAIACYERCLTISPNFEIAKNNMAIALTDLGTKVKIE 265

Query: 286 --VDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNN 343
             +++ +  Y + L     +  A+ NLG  Y E      A  +Y+  L      +   NN
Sbjct: 266 GDINQGVAYYKKALFYNWHYADAMYNLGVAYGEMLNFEMAIVFYELALHFNPRCAEACNN 325

Query: 344 LAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRP 403
           L VIYK + N   A+ CY   L I P  +  L N G  Y   G++  A     +AI    
Sbjct: 326 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAASSMIQKAIFANS 385

Query: 404 TMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMF 463
           T AEA+ NL   Y+D+G + +A+++Y++ L + PD   A  N L  L  +    D D+++
Sbjct: 386 TYAEAYNNLGVLYRDAGSITSAVQAYEKCLQIDPDSRNAGQNRLLALNYIDEGFD-DKLY 444

Query: 464 SEVEGIIRRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHP 523
                  +R + +             YP           +Y S             +++P
Sbjct: 445 QAHREWGKRFLKL-------------YP-----------QYTS-------------WDNP 467

Query: 524 VPIPIRLDGGLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYA---LSPNDGT 580
                      R L +GYVS D+  H +S+ + +    H+  N +V  Y+    +     
Sbjct: 468 KVAD-------RPLVIGYVSPDYFTHSVSYFIEAPLAHHDYSNYKVVVYSGVVKADAKTL 520

Query: 581 EWRQRTQSEAEHFVDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQV 640
            ++ +   +   + D+  +    +A L+ EDK+ IL+ L G+T   +    A +PAPIQV
Sbjct: 521 RFKDKVLKKGGLWRDIYGIDEKKVASLVREDKVDILVELTGHTANNKLGTMACRPAPIQV 580

Query: 641 SYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNC 700
           +++G+P TTG   IDY +TD    P      + E+LV +P  +    Y         P  
Sbjct: 581 TWIGYPNTTGLPTIDYRITDSLADPPDTTQKHVEELVRLPESFLC--YSPS------PEA 632

Query: 701 QPKRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGE---MR 757
            P      +      F  FN L K+ P++   W  IL  VPNS L +   P   +    +
Sbjct: 633 GPVCPTPAILNGFITFGSFNNLAKITPKVLQVWAKILCAVPNSRLVVKCKPFCCDSIRQK 692

Query: 758 LRAYAVAQGVQPDQI-IFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMI 816
             +     G++P ++ +   + +  +H++  SL D+ LDT      TT  + L+ G+P +
Sbjct: 693 FLSTLAELGLEPLRVDLLPLIHLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCV 752

Query: 817 TLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLT 876
           T+     A  V  SL    GLG  ++  S  EY   A+ LA D   LQ L   L+ +   
Sbjct: 753 TMAGSVHAHNVGVSLLTKVGLG-RLVAKSENEYVSLALDLAADVTALQELRMSLRGLMAK 811

Query: 877 CPLFD 881
            P+ D
Sbjct: 812 SPVCD 816

Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	887
357441255	986	O-linked GlcNAc transferase like protein	0.998	0.898	0.904	0.0
255562045	979	o-linked n-acetylglucosamine transferase	0.998	0.905	0.922	0.0
356535232	988	PREDICTED: probable UDP-N-acetylglucosam	0.998	0.896	0.896	0.0
224123642	923	predicted protein [Populus trichocarpa]	0.997	0.958	0.902	0.0
225430656	986	PREDICTED: probable UDP-N-acetylglucosam	0.998	0.898	0.887	0.0
449449593	975	PREDICTED: probable UDP-N-acetylglucosam	0.986	0.897	0.880	0.0
15229253	977	putative UDP-N-acetylglucosamine--peptid	0.996	0.904	0.861	0.0
297833104	977	hypothetical protein ARALYDRAFT_896453 [	0.996	0.904	0.862	0.0
224144666	873	predicted protein [Populus trichocarpa]	0.942	0.957	0.906	0.0
242065108	1011	hypothetical protein SORBIDRAFT_04g01956	0.997	0.875	0.830	0.0

>gi|357441255|ref|XP_003590905.1| O-linked GlcNAc transferase like protein [Medicago truncatula] gi|355479953|gb|AES61156.1| O-linked GlcNAc transferase like protein [Medicago truncatula]

 Score = 1719 bits (4451), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 802/887 (90%), Positives = 860/887 (96%), Gaps = 1/887 (0%)

Query: 1   MHMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEAL 60
           +H+ LAHQMYKSGSYK+ALEHSN+VYERNPLRTDNLLLLGAIYYQLHD+DMC+A+NEEAL
Sbjct: 64  LHLTLAHQMYKSGSYKKALEHSNTVYERNPLRTDNLLLLGAIYYQLHDFDMCVAKNEEAL 123

Query: 61  RLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEA 120
           R+EP FAECYGNMANAWKEKG+IDLAIRYYL+AIELRPNFADAWSNLASAYMRKGRL EA
Sbjct: 124 RIEPHFAECYGNMANAWKEKGNIDLAIRYYLIAIELRPNFADAWSNLASAYMRKGRLTEA 183

Query: 121 AQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFM 180
           AQCCRQALA+NPL+VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFM
Sbjct: 184 AQCCRQALAINPLMVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFM 243

Query: 181 ESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAF 239
           ESGD NRALQYYKEAVKLKP+FPDAYLNLGNVYKALGMPQEAI CYQ A+QTRPN  +A+
Sbjct: 244 ESGDFNRALQYYKEAVKLKPSFPDAYLNLGNVYKALGMPQEAIACYQHALQTRPNYGMAY 303

Query: 240 GNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 299
           GNLAS +YE+GQ DMAIL+YKQAI CDPRFLEAYNNLGNALKDVGRV+EAIQCYNQCLSL
Sbjct: 304 GNLASIHYEQGQLDMAILHYKQAIACDPRFLEAYNNLGNALKDVGRVEEAIQCYNQCLSL 363

Query: 300 QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAIS 359
           QP+HPQALTNLGNIYMEWNM+ AAASYYKATL VTTGLSAP+NNLA+IYKQQGNYADAIS
Sbjct: 364 QPNHPQALTNLGNIYMEWNMVAAAASYYKATLNVTTGLSAPYNNLAIIYKQQGNYADAIS 423

Query: 360 CYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDS 419
           CYNEVLRIDPLAADGLVNRGNTYKEIGRV+DAIQDYIRAIT+RPTMAEAHANLASAYKDS
Sbjct: 424 CYNEVLRIDPLAADGLVNRGNTYKEIGRVSDAIQDYIRAITVRPTMAEAHANLASAYKDS 483

Query: 420 GHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVL 479
           GHVEAA+KSY+QAL+LR DFPEATCNLLHTLQCVC WEDRD+MF EVEGIIRRQ+NMSVL
Sbjct: 484 GHVEAAVKSYRQALILRTDFPEATCNLLHTLQCVCCWEDRDQMFKEVEGIIRRQINMSVL 543

Query: 480 PSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLRV 539
           PSVQPFHAIAYP+DPMLALEISRKYA+HCS+IASRF+LPPF+HP PIPI+ +GG  RLR+
Sbjct: 544 PSVQPFHAIAYPLDPMLALEISRKYAAHCSVIASRFSLPPFSHPAPIPIKQEGGYERLRI 603

Query: 540 GYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAM 599
           GYVSSDFGNHPLSHLMGSVFGMHN++NVEVFCYALSPNDGTEWRQR QSEAEHFVDVSAM
Sbjct: 604 GYVSSDFGNHPLSHLMGSVFGMHNRKNVEVFCYALSPNDGTEWRQRIQSEAEHFVDVSAM 663

Query: 600 SSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVT 659
           +SD IAKLINEDKIQILINLNGYTKGARNEIFAM+PAP+QVSYMGFPGTTGA+YIDYLVT
Sbjct: 664 TSDTIAKLINEDKIQILINLNGYTKGARNEIFAMKPAPVQVSYMGFPGTTGATYIDYLVT 723

Query: 660 DEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACF 719
           DEFVSPL+YAHIYSEK+VH+PHCYFVNDYKQKN DVLDPNCQPKRSDYGLPEDKF+FACF
Sbjct: 724 DEFVSPLQYAHIYSEKIVHLPHCYFVNDYKQKNQDVLDPNCQPKRSDYGLPEDKFLFACF 783

Query: 720 NQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAM 779
           NQLYKMDPEIFNTWCNIL+RVPNSALWLL+FPAAGEMRLRAYA AQGVQPDQIIFTDVAM
Sbjct: 784 NQLYKMDPEIFNTWCNILKRVPNSALWLLKFPAAGEMRLRAYAAAQGVQPDQIIFTDVAM 843

Query: 780 KQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGE 839
           K EHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPM+TLPLEKMATRVAGSLC++TGLGE
Sbjct: 844 KGEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMVTLPLEKMATRVAGSLCISTGLGE 903

Query: 840 EMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWV 886
           EMIV+SMKEYE+RAVSLAL+R KLQALT+KLKSVRLTCPLFDT RWV
Sbjct: 904 EMIVSSMKEYEDRAVSLALNRPKLQALTDKLKSVRLTCPLFDTNRWV 950

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562045|ref|XP_002522031.1| o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis] gi|223538835|gb|EEF40435.1| o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]

 Score = 1707 bits (4422), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 818/887 (92%), Positives = 863/887 (97%), Gaps = 1/887 (0%)

Query: 1   MHMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEAL 60
           MH+AL+HQ+YK+G+YKQALEHSN+VYER+PLRTDNLLLLGAIYYQLHDYDMCI +NEEAL
Sbjct: 57  MHLALSHQLYKAGNYKQALEHSNTVYERSPLRTDNLLLLGAIYYQLHDYDMCIEKNEEAL 116

Query: 61  RLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEA 120
           RLEPRFAECYGNMANAWKEKGDIDLAIRYYL+AIELRPNFADAWSNLASAYMRKGRLNEA
Sbjct: 117 RLEPRFAECYGNMANAWKEKGDIDLAIRYYLIAIELRPNFADAWSNLASAYMRKGRLNEA 176

Query: 121 AQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFM 180
           AQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLF+
Sbjct: 177 AQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFL 236

Query: 181 ESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAF 239
           ESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVY+ALGMPQEAI+CYQRAVQTRPN A+AF
Sbjct: 237 ESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYRALGMPQEAIVCYQRAVQTRPNYAVAF 296

Query: 240 GNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 299
           GNLASTYYERGQ D+AI +YKQAI CD RFLEAYNNLGNALKDVGRV+EAIQCYNQCL+L
Sbjct: 297 GNLASTYYERGQLDLAIHHYKQAIACDGRFLEAYNNLGNALKDVGRVEEAIQCYNQCLAL 356

Query: 300 QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAIS 359
           QPSHPQALTNLGNIYMEWNM   AASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAIS
Sbjct: 357 QPSHPQALTNLGNIYMEWNMASTAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAIS 416

Query: 360 CYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDS 419
           CYNEVLRIDPLAADGLVNRGNTYKEIGRV+DAIQDYIRAITIRPTMAEAHANLASAYKDS
Sbjct: 417 CYNEVLRIDPLAADGLVNRGNTYKEIGRVSDAIQDYIRAITIRPTMAEAHANLASAYKDS 476

Query: 420 GHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVL 479
           G VEAA+KSY+QAL+LRPDFPEATCNLLHTLQCVC WEDRD+MFSEVEGIIRRQ+ MSVL
Sbjct: 477 GRVEAAVKSYRQALVLRPDFPEATCNLLHTLQCVCCWEDRDKMFSEVEGIIRRQITMSVL 536

Query: 480 PSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLRV 539
           PSVQPFHAIAYPIDPMLAL+ISRKYA+HCSIIASRF LPPFNHP PIPIR D G  RLR+
Sbjct: 537 PSVQPFHAIAYPIDPMLALDISRKYAAHCSIIASRFGLPPFNHPPPIPIRRDRGSERLRI 596

Query: 540 GYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAM 599
           GYVSSDFGNHPLSHLMGSVFGMHN+ENVEVFCYALSPNDGTEWRQR QSEAEHFV+VSAM
Sbjct: 597 GYVSSDFGNHPLSHLMGSVFGMHNRENVEVFCYALSPNDGTEWRQRIQSEAEHFVEVSAM 656

Query: 600 SSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVT 659
           S+DMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGA+YIDYLVT
Sbjct: 657 SADMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGATYIDYLVT 716

Query: 660 DEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACF 719
           DEFVSP RY+HIYSEKLVH+PHCYFVNDYKQKN+DVLDP CQ KRSDYGLPEDKFIFACF
Sbjct: 717 DEFVSPTRYSHIYSEKLVHMPHCYFVNDYKQKNLDVLDPTCQHKRSDYGLPEDKFIFACF 776

Query: 720 NQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAM 779
           NQLYKMDPEIFNTWCNIL+RVPNSALWLLRFPAAGEMRLR+YAV+QGVQP+QIIFTDVAM
Sbjct: 777 NQLYKMDPEIFNTWCNILKRVPNSALWLLRFPAAGEMRLRSYAVSQGVQPEQIIFTDVAM 836

Query: 780 KQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGE 839
           KQEHIRRS+LADLFLDTPLCNAHTTGTDILWAGLPM+TLPLEKMATRVAGSLCLATGLG+
Sbjct: 837 KQEHIRRSALADLFLDTPLCNAHTTGTDILWAGLPMVTLPLEKMATRVAGSLCLATGLGD 896

Query: 840 EMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWV 886
           EMIV+SMKEYEE+AVSLAL+R KLQALTNKLK+VR+TCPLFDT RWV
Sbjct: 897 EMIVSSMKEYEEKAVSLALNRPKLQALTNKLKAVRMTCPLFDTPRWV 943

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535232|ref|XP_003536152.1| PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC-like [Glycine max]

 Score = 1700 bits (4403), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 795/887 (89%), Positives = 853/887 (96%), Gaps = 1/887 (0%)

Query: 1   MHMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEAL 60
           ++++LAHQMYK+G+YKQALEHSN+VYERNPLRTDNLLLLGA+YYQLHD+DMC+A+NEEAL
Sbjct: 66  VYLSLAHQMYKTGNYKQALEHSNTVYERNPLRTDNLLLLGAVYYQLHDFDMCVAKNEEAL 125

Query: 61  RLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEA 120
           R+EP FAECYGNMANAWKEKG+IDLAIRYYL+AIELRPNFADAWSNLASAYMRKGRL EA
Sbjct: 126 RIEPHFAECYGNMANAWKEKGNIDLAIRYYLIAIELRPNFADAWSNLASAYMRKGRLTEA 185

Query: 121 AQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFM 180
           AQCCRQALA+NPL+VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFM
Sbjct: 186 AQCCRQALAINPLMVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFM 245

Query: 181 ESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAF 239
           ESGD NRALQYYKEAVKLKP+FPDAYLNLGNVYKALGMPQEAI CYQ A+QTRPN  +A+
Sbjct: 246 ESGDFNRALQYYKEAVKLKPSFPDAYLNLGNVYKALGMPQEAIACYQHALQTRPNYGMAY 305

Query: 240 GNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 299
           GNLAS YYE+GQ DMAIL+YKQA+ CDPRFLEAYNNLGNALKDVGRV+EAIQCYNQCL+L
Sbjct: 306 GNLASIYYEQGQLDMAILHYKQAVACDPRFLEAYNNLGNALKDVGRVEEAIQCYNQCLTL 365

Query: 300 QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAIS 359
           QP+HPQALTNLGNIYMEWNM+ AAA YYKATL VTTGLSAP+NNLA+IYKQQGNY DAIS
Sbjct: 366 QPNHPQALTNLGNIYMEWNMVAAAAQYYKATLNVTTGLSAPYNNLAIIYKQQGNYVDAIS 425

Query: 360 CYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDS 419
           CYNEVLRIDPLAADGLVNRGNTYKEIGRV+DAIQDYIRAI +RPTMAEAHANLASAYKDS
Sbjct: 426 CYNEVLRIDPLAADGLVNRGNTYKEIGRVSDAIQDYIRAIVVRPTMAEAHANLASAYKDS 485

Query: 420 GHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVL 479
           GHVEAA+KSYKQAL+LRPDFPEATCNLLHTLQCVC WEDRD+MF EVE IIRRQ+NMSVL
Sbjct: 486 GHVEAAVKSYKQALILRPDFPEATCNLLHTLQCVCCWEDRDKMFKEVESIIRRQINMSVL 545

Query: 480 PSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLRV 539
           PSVQPFHAIAYP+DPMLALEISRKYA+HCS+IASRFALPPFNHP PIPI+ +GG  RLR+
Sbjct: 546 PSVQPFHAIAYPLDPMLALEISRKYAAHCSVIASRFALPPFNHPSPIPIKREGGYERLRI 605

Query: 540 GYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAM 599
           GYVSSDFGNHPLSHLMGSVFGMHN++NVEVFCYALS NDGTEWRQR QSEAEHFVDVSAM
Sbjct: 606 GYVSSDFGNHPLSHLMGSVFGMHNRKNVEVFCYALSANDGTEWRQRIQSEAEHFVDVSAM 665

Query: 600 SSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVT 659
           SSD IAK+INEDKI IL+NLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGA+YIDYLVT
Sbjct: 666 SSDAIAKMINEDKIHILVNLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGATYIDYLVT 725

Query: 660 DEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACF 719
           DEFVSPL YA+IYSEK+VH+PHCYFVNDYKQKN DVLDPNC  KRSDYGLPEDKFIFACF
Sbjct: 726 DEFVSPLGYANIYSEKIVHLPHCYFVNDYKQKNQDVLDPNCPHKRSDYGLPEDKFIFACF 785

Query: 720 NQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAM 779
           NQLYKMDPEIFNTWCNIL+RVPNSALWLLRFPAAGEMRLRAYA AQGVQPDQIIFTDVA 
Sbjct: 786 NQLYKMDPEIFNTWCNILKRVPNSALWLLRFPAAGEMRLRAYAAAQGVQPDQIIFTDVAT 845

Query: 780 KQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGE 839
           K EHIRRSSLADLFLD+PLCNAHTTGTDILWAGLPM+TLPLEKMATRVAGSLCLATGLG+
Sbjct: 846 KNEHIRRSSLADLFLDSPLCNAHTTGTDILWAGLPMVTLPLEKMATRVAGSLCLATGLGD 905

Query: 840 EMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWV 886
           EMIV+SMKEYE+RAVSLAL+R KL+ALTNKLK+VRLTCPLFDTARWV
Sbjct: 906 EMIVSSMKEYEDRAVSLALNRPKLKALTNKLKAVRLTCPLFDTARWV 952

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123642|ref|XP_002319130.1| predicted protein [Populus trichocarpa] gi|222857506|gb|EEE95053.1| predicted protein [Populus trichocarpa]

 Score = 1697 bits (4394), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 800/886 (90%), Positives = 852/886 (96%), Gaps = 1/886 (0%)

Query: 2   HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
           H+ LAHQ+YKSG+YKQALEHS+ VYER+P RTDNLLLLGAIYYQL DYDMCIA+NEEALR
Sbjct: 5   HLGLAHQLYKSGNYKQALEHSSVVYERSPQRTDNLLLLGAIYYQLQDYDMCIAKNEEALR 64

Query: 62  LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA 121
           LEPRFAECYGNMANAWKEKGDIDLAIRYYLV+IELRPNFADAWSNLASAYMRKGRLNEA+
Sbjct: 65  LEPRFAECYGNMANAWKEKGDIDLAIRYYLVSIELRPNFADAWSNLASAYMRKGRLNEAS 124

Query: 122 QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFME 181
           QCCRQAL LNP LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFME
Sbjct: 125 QCCRQALTLNPHLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFME 184

Query: 182 SGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFG 240
           SGDLNRALQYYKEAVKLKP FPDAYLNLGNVYKALGMPQEAI+CYQ+AVQ RP  A+AFG
Sbjct: 185 SGDLNRALQYYKEAVKLKPKFPDAYLNLGNVYKALGMPQEAIVCYQQAVQARPKYAMAFG 244

Query: 241 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300
           NLASTYYERGQ D+AIL+YKQAI CD RFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ
Sbjct: 245 NLASTYYERGQLDLAILHYKQAIACDQRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 304

Query: 301 PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISC 360
           P+HPQALTNLGNIYMEWNM  AAAS YKATLAVTTGLSAPF+NLAVIYKQQGNY+DAISC
Sbjct: 305 PNHPQALTNLGNIYMEWNMSAAAASCYKATLAVTTGLSAPFSNLAVIYKQQGNYSDAISC 364

Query: 361 YNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 420
           YNEVLRI+PLAADGLVNRGNTYKEIGRV++AIQDYI AITIRP MAEAHANLASAYKDSG
Sbjct: 365 YNEVLRIEPLAADGLVNRGNTYKEIGRVSEAIQDYINAITIRPNMAEAHANLASAYKDSG 424

Query: 421 HVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLP 480
           HVEAAIKSY++ALLLR DFPEATCNLLHTLQCVC WEDRD+MF+EVEGIIRRQ++M+VLP
Sbjct: 425 HVEAAIKSYRKALLLRTDFPEATCNLLHTLQCVCCWEDRDKMFNEVEGIIRRQISMAVLP 484

Query: 481 SVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLRVG 540
           SVQPFHAIAYPIDP+LALEISRKYA+HCSIIASRFALPPF HP P+ ++ + G  RLR+G
Sbjct: 485 SVQPFHAIAYPIDPVLALEISRKYAAHCSIIASRFALPPFKHPAPLAVKHERGSGRLRIG 544

Query: 541 YVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMS 600
           YVSSDFGNHPLSHLMGSVFGMHN+ENVEVFCYALSPNDGTEWRQRTQ EAEHF+DVSAM+
Sbjct: 545 YVSSDFGNHPLSHLMGSVFGMHNRENVEVFCYALSPNDGTEWRQRTQFEAEHFIDVSAMT 604

Query: 601 SDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTD 660
           SDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGA+YIDYLVTD
Sbjct: 605 SDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGATYIDYLVTD 664

Query: 661 EFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFN 720
           EFVSP R++HIYSEKLVH+PHCYFVNDYKQKN+DVLDP CQ KRSDYGLPEDKFIFACFN
Sbjct: 665 EFVSPTRFSHIYSEKLVHLPHCYFVNDYKQKNLDVLDPTCQHKRSDYGLPEDKFIFACFN 724

Query: 721 QLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMK 780
           QLYKMDPEIFNTWCNIL+RVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMK
Sbjct: 725 QLYKMDPEIFNTWCNILKRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMK 784

Query: 781 QEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEE 840
           QEHIRRS+LADLFLDTPLCNAHTTGTDILWAGLPM+T+PLEKMATRVAGSLCLATGLG+E
Sbjct: 785 QEHIRRSALADLFLDTPLCNAHTTGTDILWAGLPMVTMPLEKMATRVAGSLCLATGLGDE 844

Query: 841 MIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWV 886
           MIV+SMKEYEERAVSLAL+R KLQ+LTN+LK+ R+TCPLFDT RWV
Sbjct: 845 MIVSSMKEYEERAVSLALNRPKLQSLTNRLKAARMTCPLFDTRRWV 890

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430656|ref|XP_002270163.1| PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Vitis vinifera] gi|296085167|emb|CBI28662.3| unnamed protein product [Vitis vinifera]

 Score = 1668 bits (4320), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 787/887 (88%), Positives = 856/887 (96%), Gaps = 1/887 (0%)

Query: 1   MHMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEAL 60
           M +ALAHQ YK+G+YKQ+L+H N+VYERN LRTDNLLL+GAIYYQLHD+DMCIARNEEAL
Sbjct: 64  MLLALAHQSYKAGNYKQSLDHCNAVYERNSLRTDNLLLMGAIYYQLHDFDMCIARNEEAL 123

Query: 61  RLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEA 120
           +++PRFAECYGNMANAWKEKG++DLAIRYYL+AIELRPNF DAWSNLASAYMRKGRLNEA
Sbjct: 124 QIDPRFAECYGNMANAWKEKGNVDLAIRYYLIAIELRPNFCDAWSNLASAYMRKGRLNEA 183

Query: 121 AQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFM 180
           AQCCRQALA+NPLLVDAHSNLGN MKAQGL+QEAYSCY+EALRIQP+FAIAWSNLAGLFM
Sbjct: 184 AQCCRQALAINPLLVDAHSNLGNFMKAQGLIQEAYSCYIEALRIQPSFAIAWSNLAGLFM 243

Query: 181 ESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAF 239
           ESGDL RALQYYKEAVKLKPTF DAYLNLGNVYKALGMPQEAI+CYQRA+QTRP  A+A+
Sbjct: 244 ESGDLTRALQYYKEAVKLKPTFADAYLNLGNVYKALGMPQEAIVCYQRALQTRPEYAMAY 303

Query: 240 GNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 299
           GN+A TYYE+GQ DMAI++YKQAI CD  FLEAYNNLGNALKDVGR+DEAIQCY+QCL+L
Sbjct: 304 GNMAGTYYEQGQMDMAIVHYKQAIECDSGFLEAYNNLGNALKDVGRIDEAIQCYHQCLAL 363

Query: 300 QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAIS 359
           QP+HPQALTNLGNIYMEWNM+ AAA+YYKATLAVTTGLSAPF+NLA+IYKQQGNYADAIS
Sbjct: 364 QPNHPQALTNLGNIYMEWNMVAAAATYYKATLAVTTGLSAPFSNLAIIYKQQGNYADAIS 423

Query: 360 CYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDS 419
           CYNEVLRIDPLAADGLVNRGNT+KEIGRV++AIQDYI AITIRPTMAEAHANLASAYKDS
Sbjct: 424 CYNEVLRIDPLAADGLVNRGNTFKEIGRVSEAIQDYIHAITIRPTMAEAHANLASAYKDS 483

Query: 420 GHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVL 479
           GHVEAA+KSYKQAL+LRPDFPEATCNLLHTLQCVCSWEDR++MF EVEGIIRRQ+ MSVL
Sbjct: 484 GHVEAAVKSYKQALVLRPDFPEATCNLLHTLQCVCSWEDREKMFIEVEGIIRRQIKMSVL 543

Query: 480 PSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLRV 539
           PSVQPFHAIAYPIDP+LAL+ISRKYA+HCS+IASR+ALP FNHP P+P++ +GG  RLR+
Sbjct: 544 PSVQPFHAIAYPIDPLLALDISRKYAAHCSLIASRYALPSFNHPNPVPVKSEGGSGRLRI 603

Query: 540 GYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAM 599
           GY+SSDFGNHPLSHLMGSVFGMHN+ENVEVFCYALSPND TEWRQR QSEAEHF+DVSAM
Sbjct: 604 GYLSSDFGNHPLSHLMGSVFGMHNRENVEVFCYALSPNDSTEWRQRIQSEAEHFIDVSAM 663

Query: 600 SSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVT 659
           SSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVT
Sbjct: 664 SSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVT 723

Query: 660 DEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACF 719
           DEFVSPL YAHIYSEKLVH+PHCYFVNDYKQKN DVLDPNCQ KRSDYGLPEDKFIFACF
Sbjct: 724 DEFVSPLCYAHIYSEKLVHLPHCYFVNDYKQKNRDVLDPNCQHKRSDYGLPEDKFIFACF 783

Query: 720 NQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAM 779
           NQLYKMDPEIFNTWCNIL+RVPNSALWLLRFPAAGEMRLR+YAVAQG+QPD+IIFTDVAM
Sbjct: 784 NQLYKMDPEIFNTWCNILKRVPNSALWLLRFPAAGEMRLRSYAVAQGLQPDRIIFTDVAM 843

Query: 780 KQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGE 839
           K EHIRRS+LADLFLDTPLCNAHTTGTDILWAGLPM+TLPLEKMATRVAGSLCLATGLGE
Sbjct: 844 KHEHIRRSALADLFLDTPLCNAHTTGTDILWAGLPMVTLPLEKMATRVAGSLCLATGLGE 903

Query: 840 EMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWV 886
           EMIV+SMKEYEE+AVSLA++R KLQALTNKLK+VR++CPLFDTARWV
Sbjct: 904 EMIVSSMKEYEEKAVSLAMNRPKLQALTNKLKAVRMSCPLFDTARWV 950

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449593|ref|XP_004142549.1| PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC-like [Cucumis sativus]

 Score = 1640 bits (4246), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 780/886 (88%), Positives = 835/886 (94%), Gaps = 11/886 (1%)

Query: 2   HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
           ++ALAHQ YK+G YKQALEHS  VYERN LRTDNLLL+GAIYYQL D+DMCIA+NEEALR
Sbjct: 64  YLALAHQKYKNGDYKQALEHSTLVYERNSLRTDNLLLMGAIYYQLSDFDMCIAKNEEALR 123

Query: 62  LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA 121
           +EPRFAECYGNMANAWKEKG+IDLAIRYYL AIELRPNF DAWSNLASAYMRKGRL EAA
Sbjct: 124 IEPRFAECYGNMANAWKEKGNIDLAIRYYLHAIELRPNFCDAWSNLASAYMRKGRLGEAA 183

Query: 122 QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFME 181
           QCCRQALALNPLLVDAHSNLGNLMKAQG+VQEAYSCYLEALRIQPTFAIAWSNLAGLFME
Sbjct: 184 QCCRQALALNPLLVDAHSNLGNLMKAQGMVQEAYSCYLEALRIQPTFAIAWSNLAGLFME 243

Query: 182 SGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFG 240
           SGDLNRALQYYKEAVKLKP FPDAYLNLGNVYKALGMPQEAI+CYQRA+Q RPN AIA+G
Sbjct: 244 SGDLNRALQYYKEAVKLKPQFPDAYLNLGNVYKALGMPQEAIVCYQRAIQMRPNYAIAYG 303

Query: 241 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300
           NLASTYYE+ Q DMAIL+YKQAI CDPRFLEAYNNLGNALK+ GRV+EAIQCYNQCL+LQ
Sbjct: 304 NLASTYYEQSQLDMAILHYKQAITCDPRFLEAYNNLGNALKEFGRVEEAIQCYNQCLALQ 363

Query: 301 PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISC 360
           PSHPQALTNLGNIYMEWNM+PAAASYYKATL VTTGLSAPFNNLA+IYKQQGNYADAISC
Sbjct: 364 PSHPQALTNLGNIYMEWNMVPAAASYYKATLRVTTGLSAPFNNLAIIYKQQGNYADAISC 423

Query: 361 YNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 420
           YNEVLRIDPLAADGLVNRGNTYKEIGRV++AIQDYIRAI IRPTMAEAHANLASAYKDSG
Sbjct: 424 YNEVLRIDPLAADGLVNRGNTYKEIGRVSEAIQDYIRAINIRPTMAEAHANLASAYKDSG 483

Query: 421 HVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLP 480
            VEAAIKSYKQAL LRP+FPEATCNLLHTLQCVC+WEDRD+MF+EVEGII+RQ+NMSVLP
Sbjct: 484 LVEAAIKSYKQALHLRPEFPEATCNLLHTLQCVCNWEDRDKMFAEVEGIIKRQINMSVLP 543

Query: 481 SVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLRVG 540
           SVQPFHAIAYPIDP+LALEISR YASHC  IASRF+LP FNHP P+ I+ +GG  RLR+G
Sbjct: 544 SVQPFHAIAYPIDPLLALEISRSYASHCLKIASRFSLPSFNHPSPVAIKRNGGFERLRIG 603

Query: 541 YVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMS 600
           YVSSDFGNHPLSHLMGSVFGMHN+E+VEVFCYALSPND TEWRQR Q EAEHFVDVS+M+
Sbjct: 604 YVSSDFGNHPLSHLMGSVFGMHNREHVEVFCYALSPNDNTEWRQRIQFEAEHFVDVSSMT 663

Query: 601 SDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTD 660
           SD+IAK+INEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGA+YIDYLVTD
Sbjct: 664 SDVIAKMINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGATYIDYLVTD 723

Query: 661 EFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFN 720
           EFVSPLRYAHIYSEK+VH+PHCYFVNDYKQ    ++            LP+ KFIFACFN
Sbjct: 724 EFVSPLRYAHIYSEKIVHLPHCYFVNDYKQVICLLV----------LHLPQGKFIFACFN 773

Query: 721 QLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMK 780
           QLYKMDPEIFNTWCNIL+RVPNSALWLLRFPAAGEMRLRAYAVAQGVQP+QIIFTDVAMK
Sbjct: 774 QLYKMDPEIFNTWCNILKRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPEQIIFTDVAMK 833

Query: 781 QEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEE 840
            EHIRRS+LADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLG+E
Sbjct: 834 NEHIRRSALADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGDE 893

Query: 841 MIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWV 886
           MIV+SMKEYEE+AV+LAL+R KLQALTNKLK+VR+TCPLFDTARWV
Sbjct: 894 MIVSSMKEYEEKAVTLALNRPKLQALTNKLKAVRMTCPLFDTARWV 939

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15229253|ref|NP_187074.1| putative UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Arabidopsis thaliana] gi|75336082|sp|Q9M8Y0.1|SEC_ARATH RecName: Full=Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC; AltName: Full=Protein SECRET AGENT gi|6721161|gb|AAF26789.1|AC016829_13 putative O-linked GlcNAc transferase [Arabidopsis thaliana] gi|18139887|gb|AAL60196.1|AF441079_1 O-linked N-acetyl glucosamine transferase [Arabidopsis thaliana] gi|20259324|gb|AAM13988.1| putative O-linked GlcNAc transferase [Arabidopsis thaliana] gi|21436429|gb|AAM51415.1| putative O-linked GlcNAc transferase [Arabidopsis thaliana] gi|110742062|dbj|BAE98963.1| O-linked GlcNAc transferase like protein [Arabidopsis thaliana] gi|332640535|gb|AEE74056.1| putative UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Arabidopsis thaliana]

 Score = 1635 bits (4234), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 762/885 (86%), Positives = 828/885 (93%), Gaps = 1/885 (0%)

Query: 3   MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRL 62
           +ALAHQ+YK G +KQALEHSN VY+RNPLRTDNLLL+GAIYYQL +YDMCIARNEEALR+
Sbjct: 57  LALAHQLYKGGDFKQALEHSNMVYQRNPLRTDNLLLIGAIYYQLQEYDMCIARNEEALRI 116

Query: 63  EPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQ 122
           +P+FAECYGNMANAWKEKGD D AIRYYL+AIELRPNFADAWSNLASAYMRKGRL+EA Q
Sbjct: 117 QPQFAECYGNMANAWKEKGDTDRAIRYYLIAIELRPNFADAWSNLASAYMRKGRLSEATQ 176

Query: 123 CCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMES 182
           CC+QAL+LNPLLVDAHSNLGNLMKAQGL+ EAYSCYLEA+RIQPTFAIAWSNLAGLFMES
Sbjct: 177 CCQQALSLNPLLVDAHSNLGNLMKAQGLIHEAYSCYLEAVRIQPTFAIAWSNLAGLFMES 236

Query: 183 GDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGN 241
           GDLNRALQYYKEAVKLKP FPDAYLNLGNVYKALG P EAIMCYQ A+Q RPN A+AFGN
Sbjct: 237 GDLNRALQYYKEAVKLKPAFPDAYLNLGNVYKALGRPTEAIMCYQHALQMRPNSAMAFGN 296

Query: 242 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP 301
           +AS YYE+GQ D+AI +YKQA+  DPRFLEAYNNLGNALKD+GRVDEA++CYNQCL+LQP
Sbjct: 297 IASIYYEQGQLDLAIRHYKQALSRDPRFLEAYNNLGNALKDIGRVDEAVRCYNQCLALQP 356

Query: 302 SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCY 361
           +HPQA+ NLGNIYMEWNM+  A+S +KATLAVTTGLSAPFNNLA+IYKQQGNY+DAISCY
Sbjct: 357 NHPQAMANLGNIYMEWNMMGPASSLFKATLAVTTGLSAPFNNLAIIYKQQGNYSDAISCY 416

Query: 362 NEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGH 421
           NEVLRIDPLAAD LVNRGNTYKEIGRVT+AIQDY+ AI  RPTMAEAHANLASAYKDSGH
Sbjct: 417 NEVLRIDPLAADALVNRGNTYKEIGRVTEAIQDYMHAINFRPTMAEAHANLASAYKDSGH 476

Query: 422 VEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPS 481
           VEAAI SYKQALLLRPDFPEATCNLLHTLQCVC WEDR +MF+EVE IIRRQ+NMSVLPS
Sbjct: 477 VEAAITSYKQALLLRPDFPEATCNLLHTLQCVCCWEDRSKMFAEVESIIRRQINMSVLPS 536

Query: 482 VQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLRVGY 541
           VQPFHAIAYPIDP+LALEISRKYA+HCSIIASRF LPPF HP  +P++ +GG +RLR+GY
Sbjct: 537 VQPFHAIAYPIDPILALEISRKYAAHCSIIASRFGLPPFTHPAGLPVKREGGFKRLRIGY 596

Query: 542 VSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSS 601
           VSSDFGNHPLSHLMGSVFGMHN+ENVEVFCYALS ND TEWRQR QSEAEHF+DVSAMSS
Sbjct: 597 VSSDFGNHPLSHLMGSVFGMHNRENVEVFCYALSANDNTEWRQRIQSEAEHFLDVSAMSS 656

Query: 602 DMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDE 661
           D IAK+IN+DKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGA+YIDYLVTDE
Sbjct: 657 DAIAKIINQDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGATYIDYLVTDE 716

Query: 662 FVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQ 721
           FVSPL+YAHIYSEKLVH+PHCYFVNDYKQKN DVLDPN +PKRSDYGLPEDKFIFACFNQ
Sbjct: 717 FVSPLQYAHIYSEKLVHLPHCYFVNDYKQKNQDVLDPNSKPKRSDYGLPEDKFIFACFNQ 776

Query: 722 LYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQ 781
           LYKMDPEI NTWCNIL+RVPNSALWLLRFPAAGEMR R YA AQGVQPDQIIFTDVAMK 
Sbjct: 777 LYKMDPEIVNTWCNILKRVPNSALWLLRFPAAGEMRFRTYAAAQGVQPDQIIFTDVAMKS 836

Query: 782 EHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEM 841
           EHIRRS LAD+ LDTPLCN HTTGTD+LWAG+PMITLPLEKMATRVAGSLCLATGLG  M
Sbjct: 837 EHIRRSVLADVILDTPLCNGHTTGTDVLWAGVPMITLPLEKMATRVAGSLCLATGLGHGM 896

Query: 842 IVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWV 886
           IVNS++EYEE+AVSLAL++ KLQALT +L++ RLTCPLFDT RWV
Sbjct: 897 IVNSLEEYEEKAVSLALNKPKLQALTKELRASRLTCPLFDTMRWV 941

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297833104|ref|XP_002884434.1| hypothetical protein ARALYDRAFT_896453 [Arabidopsis lyrata subsp. lyrata] gi|297330274|gb|EFH60693.1| hypothetical protein ARALYDRAFT_896453 [Arabidopsis lyrata subsp. lyrata]

 Score = 1634 bits (4231), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 763/885 (86%), Positives = 827/885 (93%), Gaps = 1/885 (0%)

Query: 3   MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRL 62
           +ALAHQ+YK G +KQALEHSN VY+RNPLRTDNLLL+GAIYYQL +YDMCIARNEEALR+
Sbjct: 57  LALAHQLYKGGDFKQALEHSNMVYQRNPLRTDNLLLIGAIYYQLQEYDMCIARNEEALRI 116

Query: 63  EPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQ 122
           +P+FAECYGNMANAWKEKGD D AIRYYL+AIELRPNFADAWSNLASAYMRKGR +EA Q
Sbjct: 117 QPQFAECYGNMANAWKEKGDTDRAIRYYLIAIELRPNFADAWSNLASAYMRKGRFSEATQ 176

Query: 123 CCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMES 182
           CC+QAL+LNPLLVDAHSNLGNLMKAQGL+ EAYSCYLEA+RIQPTFAIAWSNLAGLFMES
Sbjct: 177 CCQQALSLNPLLVDAHSNLGNLMKAQGLIHEAYSCYLEAVRIQPTFAIAWSNLAGLFMES 236

Query: 183 GDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGN 241
           GDLNRALQYYKEAVKLKP FPDAYLNLGNVYKALG P EAIMCYQ A+Q RPN A+AFGN
Sbjct: 237 GDLNRALQYYKEAVKLKPAFPDAYLNLGNVYKALGRPTEAIMCYQHALQMRPNCAMAFGN 296

Query: 242 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP 301
           +AS YYE+GQ D+AI +YKQAI  DPRFLEAYNNLGNALKD+GRVDEAI+CYNQCL+LQP
Sbjct: 297 IASIYYEQGQLDLAIRHYKQAISRDPRFLEAYNNLGNALKDIGRVDEAIRCYNQCLALQP 356

Query: 302 SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCY 361
           +HPQA+ NLGNIYMEWNM+  A+S +KATLAVTTGLSAPFNNLA+IYKQQGNY+DAISCY
Sbjct: 357 NHPQAMANLGNIYMEWNMMGPASSLFKATLAVTTGLSAPFNNLAIIYKQQGNYSDAISCY 416

Query: 362 NEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGH 421
           NEVLRIDPLAAD LVNRGNTYKEIGRVT+AIQDY+ AI  RPTMAEAHANLASAYKDSGH
Sbjct: 417 NEVLRIDPLAADALVNRGNTYKEIGRVTEAIQDYMHAINFRPTMAEAHANLASAYKDSGH 476

Query: 422 VEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPS 481
           VEAAI SYKQALLLRPDFPEATCNLLHTLQCVC WEDR +MF+EVE IIRRQ+NMSVLPS
Sbjct: 477 VEAAITSYKQALLLRPDFPEATCNLLHTLQCVCCWEDRSKMFAEVESIIRRQINMSVLPS 536

Query: 482 VQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLRVGY 541
           VQPFHAIAYPIDP+LALEISRKYA+HCSIIASRF LPPF HP  +P++ +GG +RLR+GY
Sbjct: 537 VQPFHAIAYPIDPILALEISRKYAAHCSIIASRFGLPPFTHPAGLPVKREGGFKRLRIGY 596

Query: 542 VSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSS 601
           VSSDFGNHPLSHLMGSVFGMHN+ENVEVFCYALS ND TEWRQR QSEAEHF+DVS+MSS
Sbjct: 597 VSSDFGNHPLSHLMGSVFGMHNRENVEVFCYALSANDNTEWRQRIQSEAEHFLDVSSMSS 656

Query: 602 DMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDE 661
           D IAK+INEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGA+YIDYLVTDE
Sbjct: 657 DAIAKIINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGATYIDYLVTDE 716

Query: 662 FVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQ 721
           FVSPL+YAHIYSEKLVH+PHCYFVNDYKQKN DVLDPN +PKRSDYGLPEDKFIFACFNQ
Sbjct: 717 FVSPLQYAHIYSEKLVHLPHCYFVNDYKQKNQDVLDPNSKPKRSDYGLPEDKFIFACFNQ 776

Query: 722 LYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQ 781
           LYKMDPEI NTWCNIL+RVPNSALWLLRFPAAGEMR R YA AQGVQ DQIIFTDVAMK 
Sbjct: 777 LYKMDPEIVNTWCNILKRVPNSALWLLRFPAAGEMRFRTYAAAQGVQSDQIIFTDVAMKS 836

Query: 782 EHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEM 841
           EHIRRS LAD+ LDTPLCN HTTGTD+LWAG+PMITLPLEKMATRVAGSLCLATGLG EM
Sbjct: 837 EHIRRSVLADVILDTPLCNGHTTGTDVLWAGVPMITLPLEKMATRVAGSLCLATGLGHEM 896

Query: 842 IVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWV 886
           IVNS++EYEE+AVSLAL++ KLQALT +L++ RLTCPLFDT RWV
Sbjct: 897 IVNSLEEYEEKAVSLALNKPKLQALTKELRASRLTCPLFDTMRWV 941

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144666|ref|XP_002325368.1| predicted protein [Populus trichocarpa] gi|222862243|gb|EEE99749.1| predicted protein [Populus trichocarpa]

 Score = 1608 bits (4163), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 759/837 (90%), Positives = 806/837 (96%), Gaps = 1/837 (0%)

Query: 51  MCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASA 110
           MCIA+NEEALRL+PRFAECYGNMANAWKEKGDID AIRYYLV+IELRPNFADAWSNLASA
Sbjct: 1   MCIAKNEEALRLQPRFAECYGNMANAWKEKGDIDRAIRYYLVSIELRPNFADAWSNLASA 60

Query: 111 YMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAI 170
           YMRKGRLNEA+QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP+FAI
Sbjct: 61  YMRKGRLNEASQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPSFAI 120

Query: 171 AWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAV 230
           AWSNLAGLFMESGDLNRALQYYKEAVKLKP FPDAYLNLGNVYKALGMPQEAIMCYQRAV
Sbjct: 121 AWSNLAGLFMESGDLNRALQYYKEAVKLKPKFPDAYLNLGNVYKALGMPQEAIMCYQRAV 180

Query: 231 QTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEA 289
           QTRPN A+AFGNLAST YERGQ ++AIL+YKQAI CD RFLEAYNNLGNALKDVGRVDEA
Sbjct: 181 QTRPNYAMAFGNLASTCYERGQVELAILHYKQAIACDQRFLEAYNNLGNALKDVGRVDEA 240

Query: 290 IQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYK 349
           +QCYNQCLS+QP+HPQALTNLGNIYMEWNM  AAAS YKATLAVTTGLSAPFNNLAVIYK
Sbjct: 241 LQCYNQCLSIQPNHPQALTNLGNIYMEWNMSAAAASCYKATLAVTTGLSAPFNNLAVIYK 300

Query: 350 QQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAH 409
           QQGNY+DAISCYNEVLRI+P+AADGLVNRGNTYKEIGRV++AIQDYI AI IRPTMAEAH
Sbjct: 301 QQGNYSDAISCYNEVLRIEPMAADGLVNRGNTYKEIGRVSEAIQDYIHAINIRPTMAEAH 360

Query: 410 ANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGI 469
           ANLASAYKDSGHVEAAIKSY+QALLLRPDFPEATCNLLHTLQCVC WEDRD+MF EVEGI
Sbjct: 361 ANLASAYKDSGHVEAAIKSYRQALLLRPDFPEATCNLLHTLQCVCCWEDRDKMFDEVEGI 420

Query: 470 IRRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIR 529
           IRRQ++MSVLPSVQPFHAIAYPIDP+LALEIS KYA+HCSIIASRFAL PF HP P+P++
Sbjct: 421 IRRQISMSVLPSVQPFHAIAYPIDPVLALEISHKYAAHCSIIASRFALSPFKHPAPLPVK 480

Query: 530 LDGGLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSE 589
            + G  RLR+GYVSSDFGNHPLSHLMGSVFGMHN+ENVEVFCYALSPNDGTEWRQRTQ E
Sbjct: 481 HERGSGRLRIGYVSSDFGNHPLSHLMGSVFGMHNRENVEVFCYALSPNDGTEWRQRTQFE 540

Query: 590 AEHFVDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTT 649
           AEHF+DVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTT
Sbjct: 541 AEHFIDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTT 600

Query: 650 GASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGL 709
           GA+YIDYLVTDEFVSP R++HIYSEKLVH+PHCYFVNDYKQKN+DVLDP CQ KR DYGL
Sbjct: 601 GATYIDYLVTDEFVSPTRFSHIYSEKLVHLPHCYFVNDYKQKNLDVLDPTCQHKRLDYGL 660

Query: 710 PEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQP 769
           PEDKFIFACFNQLYKMDPEIFNTWCNIL+RVPNSALWLLRFPAAGEMRLRAYAVAQGV P
Sbjct: 661 PEDKFIFACFNQLYKMDPEIFNTWCNILKRVPNSALWLLRFPAAGEMRLRAYAVAQGVNP 720

Query: 770 DQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAG 829
           DQIIFTDVAMKQEHIRRS+LADLFLDTPLCNAHTTGTDILWAGLPM+T+PLEKMATRVAG
Sbjct: 721 DQIIFTDVAMKQEHIRRSALADLFLDTPLCNAHTTGTDILWAGLPMVTMPLEKMATRVAG 780

Query: 830 SLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWV 886
           SLCLATGLG+EMIV+SMKEYEERAVSLAL++ KLQ+LTN+LK+ R+TCPLFDT RWV
Sbjct: 781 SLCLATGLGDEMIVSSMKEYEERAVSLALNKPKLQSLTNRLKAFRMTCPLFDTKRWV 837

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242065108|ref|XP_002453843.1| hypothetical protein SORBIDRAFT_04g019560 [Sorghum bicolor] gi|241933674|gb|EES06819.1| hypothetical protein SORBIDRAFT_04g019560 [Sorghum bicolor]

 Score = 1561 bits (4041), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 736/886 (83%), Positives = 811/886 (91%), Gaps = 1/886 (0%)

Query: 2   HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
           H+ALAHQ Y+SG Y++ALEH N VYE+N  RTDNLLLLGAIYYQ+ +YDMCIA+NEEAL 
Sbjct: 90  HLALAHQNYRSGKYREALEHGNVVYEKNARRTDNLLLLGAIYYQIRNYDMCIAKNEEALA 149

Query: 62  LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA 121
           ++P+FAECYGNMANAWKEKGDIDLAIRYYL AI+LRPNF DAWSNLASAY RKGRLNEAA
Sbjct: 150 IDPQFAECYGNMANAWKEKGDIDLAIRYYLTAIQLRPNFCDAWSNLASAYTRKGRLNEAA 209

Query: 122 QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFME 181
           QCCRQALA+NP LVDAHSNLGNLMKAQG +QEAYSCY+EALRI P FAIAWSNLAGLFME
Sbjct: 210 QCCRQALAINPRLVDAHSNLGNLMKAQGFIQEAYSCYIEALRIDPHFAIAWSNLAGLFME 269

Query: 182 SGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFG 240
           +GDL++AL YYKEAVKLKP+F DAYLN GNVYKALGMPQ+AIMCYQRA+Q RP+ A+A+G
Sbjct: 270 AGDLDKALMYYKEAVKLKPSFADAYLNQGNVYKALGMPQDAIMCYQRALQARPDYAMAYG 329

Query: 241 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300
           NLA+ YYE+GQ DMAI  Y QAI  DP+F+EAYNN+GNALKD GRV+EAI CY  CL+LQ
Sbjct: 330 NLATIYYEQGQLDMAIRCYNQAIVYDPQFVEAYNNMGNALKDAGRVEEAINCYRSCLALQ 389

Query: 301 PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISC 360
            +HPQALTNLGNIYMEW+M+ AAAS+YKA ++VT+GLS+P NNLAVIYKQQGNYADAI+C
Sbjct: 390 ANHPQALTNLGNIYMEWSMISAAASFYKAAISVTSGLSSPLNNLAVIYKQQGNYADAITC 449

Query: 361 YNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 420
           Y EVLRIDP AAD LVNRGNT+KEIGRV +AIQDY++A TIRP MAEAHANLASAYKDSG
Sbjct: 450 YTEVLRIDPTAADALVNRGNTFKEIGRVNEAIQDYVQAATIRPNMAEAHANLASAYKDSG 509

Query: 421 HVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLP 480
           HVE AI SYKQAL LRPDFPEATCNLLHTLQCVC WE+RD MF +VE IIRRQ+ MSVLP
Sbjct: 510 HVETAIVSYKQALRLRPDFPEATCNLLHTLQCVCDWENRDAMFRDVEEIIRRQIKMSVLP 569

Query: 481 SVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLRVG 540
           SVQPFHAIAYPIDPMLALEIS KYA+HCS+IASRF LPPF HP P+P++ +G   RLRVG
Sbjct: 570 SVQPFHAIAYPIDPMLALEISCKYAAHCSLIASRFGLPPFVHPSPVPVKAEGKHCRLRVG 629

Query: 541 YVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMS 600
           YVSSDFGNHPLSHLMGSVFGMH++ N+EVFCYALS NDGTEWRQR QSEAEHFVDVSAM+
Sbjct: 630 YVSSDFGNHPLSHLMGSVFGMHDRANIEVFCYALSQNDGTEWRQRIQSEAEHFVDVSAMT 689

Query: 601 SDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTD 660
           SD IA+LIN+DKIQILINLNGYTKGARNEIFA+QPAPIQVSYMGFPGTTGA+YIDYLVTD
Sbjct: 690 SDNIARLINQDKIQILINLNGYTKGARNEIFALQPAPIQVSYMGFPGTTGAAYIDYLVTD 749

Query: 661 EFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFN 720
           EFVSP RY+HIYSEKLVH+PHCYFVNDYKQKN D L P C  KRSDYGLPEDKFIFACFN
Sbjct: 750 EFVSPSRYSHIYSEKLVHLPHCYFVNDYKQKNRDCLTPVCPHKRSDYGLPEDKFIFACFN 809

Query: 721 QLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMK 780
           QLYKMDPEIF+TWCNIL+RVPNSALWLLRFPAAGE R+RA+AVA+GV+ DQIIFTDVAMK
Sbjct: 810 QLYKMDPEIFDTWCNILKRVPNSALWLLRFPAAGETRVRAHAVARGVRSDQIIFTDVAMK 869

Query: 781 QEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEE 840
            EHIRRS+LADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLC+ATGLGEE
Sbjct: 870 NEHIRRSALADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCVATGLGEE 929

Query: 841 MIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWV 886
           MIV+SMKEYE+RAV LAL+  KLQALTNKLK VR+TCPLFDTARWV
Sbjct: 930 MIVSSMKEYEDRAVDLALNPVKLQALTNKLKEVRMTCPLFDTARWV 975

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	887
TAIR|locus:2103025	977	SEC "secret agent" [Arabidopsi	0.996	0.904	0.854	0.0
MGI|MGI:1339639	1046	Ogt "O-linked N-acetylglucosam	0.766	0.650	0.440	1.3e-206
UNIPROTKB|A5D7G1	1036	OGT "OGT protein" [Bos taurus	0.766	0.656	0.440	4.2e-206
UNIPROTKB|F1RSV2	1046	OGT "UDP-N-acetylglucosamine--	0.766	0.650	0.440	4.2e-206
UNIPROTKB|P81436	1046	OGT "UDP-N-acetylglucosamine--	0.766	0.650	0.440	4.2e-206
UNIPROTKB|O15294	1046	OGT "UDP-N-acetylglucosamine--	0.766	0.650	0.440	5.4e-206
UNIPROTKB|F1NX56	1035	OGT "Uncharacterized protein"	0.766	0.657	0.441	5.4e-206
UNIPROTKB|E2QSQ5	1046	OGT "Uncharacterized protein"	0.766	0.650	0.440	8.8e-206
UNIPROTKB|Q27HV0	1046	OGT "UDP-N-acetylglucosamine--	0.766	0.650	0.440	1.1e-205
RGD|62060	1036	Ogt "O-linked N-acetylglucosam	0.766	0.656	0.440	3e-205

TAIR|locus:2103025 SEC "secret agent" [Arabidopsis thaliana (taxid:3702)]

 Score = 4076 (1439.9 bits), Expect = 0., P = 0.
 Identities = 756/885 (85%), Positives = 818/885 (92%)

Query:     3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRL 62
             +ALAHQ+YK G +KQALEHSN VY+RNPLRTDNLLL+GAIYYQL +YDMCIARNEEALR+
Sbjct:    57 LALAHQLYKGGDFKQALEHSNMVYQRNPLRTDNLLLIGAIYYQLQEYDMCIARNEEALRI 116

Query:    63 EPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQ 122
             +P+FAECYGNMANAWKEKGD D AIRYYL+AIELRPNFADAWSNLASAYMRKGRL+EA Q
Sbjct:   117 QPQFAECYGNMANAWKEKGDTDRAIRYYLIAIELRPNFADAWSNLASAYMRKGRLSEATQ 176

Query:   123 CCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMES 182
             CC+QAL+LNPLLVDAHSNLGNLMKAQGL+ EAYSCYLEA+RIQPTFAIAWSNLAGLFMES
Sbjct:   177 CCQQALSLNPLLVDAHSNLGNLMKAQGLIHEAYSCYLEAVRIQPTFAIAWSNLAGLFMES 236

Query:   183 GDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGN 241
             GDLNRALQYYKEAVKLKP FPDAYLNLGNVYKALG P EAIMCYQ A+Q RPN A+AFGN
Sbjct:   237 GDLNRALQYYKEAVKLKPAFPDAYLNLGNVYKALGRPTEAIMCYQHALQMRPNSAMAFGN 296

Query:   242 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP 301
             +AS YYE+GQ D+AI +YKQA+  DPRFLEAYNNLGNALKD+GRVDEA++CYNQCL+LQP
Sbjct:   297 IASIYYEQGQLDLAIRHYKQALSRDPRFLEAYNNLGNALKDIGRVDEAVRCYNQCLALQP 356

Query:   302 SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCY 361
             +HPQA+ NLGNIYMEWNM+  A+S +KATLAVTTGLSAPFNNLA+IYKQQGNY+DAISCY
Sbjct:   357 NHPQAMANLGNIYMEWNMMGPASSLFKATLAVTTGLSAPFNNLAIIYKQQGNYSDAISCY 416

Query:   362 NEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGH 421
             NEVLRIDPLAAD LVNRGNTYKEIGRVT+AIQDY+ AI  RPTMAEAHANLASAYKDSGH
Sbjct:   417 NEVLRIDPLAADALVNRGNTYKEIGRVTEAIQDYMHAINFRPTMAEAHANLASAYKDSGH 476

Query:   422 VEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPS 481
             VEAAI SYKQALLLRPDFPEATCNLLHTLQCVC WEDR +MF+EVE IIRRQ+NMSVLPS
Sbjct:   477 VEAAITSYKQALLLRPDFPEATCNLLHTLQCVCCWEDRSKMFAEVESIIRRQINMSVLPS 536

Query:   482 VQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIXXXXXXXXXXXXY 541
             VQPFHAIAYPIDP+LALEISRKYA+HCSIIASRF LPPF HP  +P+            Y
Sbjct:   537 VQPFHAIAYPIDPILALEISRKYAAHCSIIASRFGLPPFTHPAGLPVKREGGFKRLRIGY 596

Query:   542 VSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSS 601
             VSSDFGNHPLSHLMGSVFGMHN+ENVEVFCYALS ND TEWRQR QSEAEHF+DVSAMSS
Sbjct:   597 VSSDFGNHPLSHLMGSVFGMHNRENVEVFCYALSANDNTEWRQRIQSEAEHFLDVSAMSS 656

Query:   602 DMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDE 661
             D IAK+IN+DKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGA+YIDYLVTDE
Sbjct:   657 DAIAKIINQDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGATYIDYLVTDE 716

Query:   662 FVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQ 721
             FVSPL+YAHIYSEKLVH+PHCYFVNDYKQKN DVLDPN +PKRSDYGLPEDKFIFACFNQ
Sbjct:   717 FVSPLQYAHIYSEKLVHLPHCYFVNDYKQKNQDVLDPNSKPKRSDYGLPEDKFIFACFNQ 776

Query:   722 LYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQ 781
             LYKMDPEI NTWCNIL+RVPNSALWLLRFPAAGEMR R YA AQGVQPDQIIFTDVAMK 
Sbjct:   777 LYKMDPEIVNTWCNILKRVPNSALWLLRFPAAGEMRFRTYAAAQGVQPDQIIFTDVAMKS 836

Query:   782 EHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEM 841
             EHIRRS LAD+ LDTPLCN HTTGTD+LWAG+PMITLPLEKMATRVAGSLCLATGLG  M
Sbjct:   837 EHIRRSVLADVILDTPLCNGHTTGTDVLWAGVPMITLPLEKMATRVAGSLCLATGLGHGM 896

Query:   842 IVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWV 886
             IVNS++EYEE+AVSLAL++ KLQALT +L++ RLTCPLFDT RWV
Sbjct:   897 IVNSLEEYEEKAVSLALNKPKLQALTKELRASRLTCPLFDTMRWV 941

GO:0005634 "nucleus" evidence=ISM

GO:0006493 "protein O-linked glycosylation" evidence=ISS;IDA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS;IDA

MGI|MGI:1339639 Ogt "O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)" [Mus musculus (taxid:10090)]

 Score = 1519 (539.8 bits), Expect = 1.3e-206, Sum P(2) = 1.3e-206
 Identities = 302/686 (44%), Positives = 423/686 (61%)

Query:     5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64
             LAH+ Y++G ++ A  H   ++ + P  T  LLLL +I++Q    D     +  A++  P
Sbjct:    27 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 86

Query:    65 RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCC 124
               AE Y N+ N +KE+G +  AI +Y  A+ L+P+F D + NLA+A +  G +  A Q  
Sbjct:    87 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 146

Query:   125 RQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD 184
               AL  NP L    S+LGNL+KA G ++EA +CYL+A+  QP FA+AWSNL  +F   G+
Sbjct:   147 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 206

Query:   185 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLA 243
             +  A+ ++++AV L P F DAY+NLGNV K   +   A+  Y RA+   PN A+  GNLA
Sbjct:   207 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 266

Query:   244 STYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 303
               YYE+G  D+AI  Y++AI   P F +AY NL NALK+ G V EA  CYN  L L P+H
Sbjct:   267 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 326

Query:   304 PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNE 363
               +L NL NI  E   +  A   Y+  L V    +A  +NLA + +QQG   +A+  Y E
Sbjct:   327 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 386

Query:   364 VLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVE 423
              +RI P  AD   N GNT KE+  V  A+Q Y RAI I P  A+AH+NLAS +KDSG++ 
Sbjct:   387 AIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIP 446

Query:   424 AAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQ 483
              AI SY+ AL L+PDFP+A CNL H LQ VC W D D    ++  I+  Q+  + LPSV 
Sbjct:   447 EAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAEQLEKNRLPSVH 506

Query:   484 PFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIXXXXXXXXXXXXYVS 543
             P H++ YP+       I+ ++ + C    +    PP+ HP  + +            YVS
Sbjct:   507 PHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVG----YVS 562

Query:   544 SDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSD- 602
             SDFGNHP SHLM S+ GMHN +  EVFCYALSP+DGT +R +  +EA HF+D+S +  + 
Sbjct:   563 SDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNG 622

Query:   603 MIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEF 662
               A  I++D I IL+N+NGYTKGARNE+FA++PAPIQ  ++G+PGT+GA ++DY++TD+ 
Sbjct:   623 KAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQE 682

Query:   663 VSPLRYAHIYSEKLVHVPHCYFVNDY 688
              SP   A  YSEKL ++PH +F+ D+
Sbjct:   683 TSPAEVAEQYSEKLAYMPHTFFIGDH 708

GO:0000123 "histone acetyltransferase complex" evidence=ISO

GO:0003824 "catalytic activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005547 "phosphatidylinositol-3,4,5-trisphosphate binding" evidence=ISO

GO:0005622 "intracellular" evidence=TAS

GO:0005634 "nucleus" evidence=ISO;TAS

GO:0005737 "cytoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006110 "regulation of glycolysis" evidence=ISO

GO:0006493 "protein O-linked glycosylation" evidence=ISO;ISS;IDA;TAS

GO:0006917 "induction of apoptosis" evidence=ISO

GO:0008047 "enzyme activator activity" evidence=ISO

GO:0008080 "N-acetyltransferase activity" evidence=TAS

GO:0008289 "lipid binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016262 "protein N-acetylglucosaminyltransferase activity" evidence=ISO

GO:0016568 "chromatin modification" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

GO:0030854 "positive regulation of granulocyte differentiation" evidence=ISO

GO:0032868 "response to insulin stimulus" evidence=ISO

GO:0035020 "regulation of Rac protein signal transduction" evidence=ISO

GO:0042277 "peptide binding" evidence=ISO

GO:0043085 "positive regulation of catalytic activity" evidence=ISO

GO:0043981 "histone H4-K5 acetylation" evidence=ISO

GO:0043982 "histone H4-K8 acetylation" evidence=ISO

GO:0043984 "histone H4-K16 acetylation" evidence=ISO

GO:0045862 "positive regulation of proteolysis" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0046626 "regulation of insulin receptor signaling pathway" evidence=ISO

GO:0048015 "phosphatidylinositol-mediated signaling" evidence=ISO

GO:0048029 "monosaccharide binding" evidence=ISO

GO:0051571 "positive regulation of histone H3-K4 methylation" evidence=ISO

GO:0070207 "protein homotrimerization" evidence=ISO

GO:0070688 "MLL5-L complex" evidence=ISO

GO:0071300 "cellular response to retinoic acid" evidence=ISO

GO:0080182 "histone H3-K4 trimethylation" evidence=ISO

UNIPROTKB|A5D7G1 OGT "OGT protein" [Bos taurus (taxid:9913)]

 Score = 1517 (539.1 bits), Expect = 4.2e-206, Sum P(2) = 4.2e-206
 Identities = 302/686 (44%), Positives = 423/686 (61%)

Query:     5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64
             LAH+ Y++G ++ A  H   ++ + P  T  LLLL +I++Q    D     +  A++  P
Sbjct:    17 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 76

Query:    65 RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCC 124
               AE Y N+ N +KE+G +  AI +Y  A+ L+P+F D + NLA+A +  G +  A Q  
Sbjct:    77 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 136

Query:   125 RQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD 184
               AL  NP L    S+LGNL+KA G ++EA +CYL+A+  QP FA+AWSNL  +F   G+
Sbjct:   137 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 196

Query:   185 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLA 243
             +  A+ ++++AV L P F DAY+NLGNV K   +   A+  Y RA+   PN A+  GNLA
Sbjct:   197 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 256

Query:   244 STYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 303
               YYE+G  D+AI  Y++AI   P F +AY NL NALK+ G V EA  CYN  L L P+H
Sbjct:   257 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 316

Query:   304 PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNE 363
               +L NL NI  E   +  A   Y+  L V    +A  +NLA + +QQG   +A+  Y E
Sbjct:   317 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 376

Query:   364 VLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVE 423
              +RI P  AD   N GNT KE+  V  A+Q Y RAI I P  A+AH+NLAS +KDSG++ 
Sbjct:   377 AIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIP 436

Query:   424 AAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQ 483
              AI SY+ AL L+PDFP+A CNL H LQ VC W D D    ++  I+  Q+  + LPSV 
Sbjct:   437 EAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVH 496

Query:   484 PFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIXXXXXXXXXXXXYVS 543
             P H++ YP+       I+ ++ + C    +    PP+ HP  + +            YVS
Sbjct:   497 PHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVG----YVS 552

Query:   544 SDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSD- 602
             SDFGNHP SHLM S+ GMHN +  EVFCYALSP+DGT +R +  +EA HF+D+S +  + 
Sbjct:   553 SDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNG 612

Query:   603 MIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEF 662
               A  I++D I IL+N+NGYTKGARNE+FA++PAPIQ  ++G+PGT+GA ++DY++TD+ 
Sbjct:   613 KAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQE 672

Query:   663 VSPLRYAHIYSEKLVHVPHCYFVNDY 688
              SP   A  YSEKL ++PH +F+ D+
Sbjct:   673 TSPAEVAEQYSEKLAYMPHTFFIGDH 698

GO:0071300 "cellular response to retinoic acid" evidence=IEA

GO:0070688 "MLL5-L complex" evidence=IEA

GO:0051571 "positive regulation of histone H3-K4 methylation" evidence=IEA

GO:0048015 "phosphatidylinositol-mediated signaling" evidence=IEA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IEA

GO:0046626 "regulation of insulin receptor signaling pathway" evidence=IEA

GO:0045862 "positive regulation of proteolysis" evidence=IEA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IEA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IEA

GO:0035020 "regulation of Rac protein signal transduction" evidence=IEA

GO:0032868 "response to insulin stimulus" evidence=IEA

GO:0030854 "positive regulation of granulocyte differentiation" evidence=IEA

GO:0008047 "enzyme activator activity" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0006110 "regulation of glycolysis" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005547 "phosphatidylinositol-3,4,5-trisphosphate binding" evidence=IEA

GO:0000123 "histone acetyltransferase complex" evidence=IEA

UNIPROTKB|F1RSV2 OGT "UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit" [Sus scrofa (taxid:9823)]

 Score = 1517 (539.1 bits), Expect = 4.2e-206, Sum P(2) = 4.2e-206
 Identities = 302/686 (44%), Positives = 423/686 (61%)

Query:     5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64
             LAH+ Y++G ++ A  H   ++ + P  T  LLLL +I++Q    D     +  A++  P
Sbjct:    27 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 86

Query:    65 RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCC 124
               AE Y N+ N +KE+G +  AI +Y  A+ L+P+F D + NLA+A +  G +  A Q  
Sbjct:    87 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 146

Query:   125 RQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD 184
               AL  NP L    S+LGNL+KA G ++EA +CYL+A+  QP FA+AWSNL  +F   G+
Sbjct:   147 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 206

Query:   185 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLA 243
             +  A+ ++++AV L P F DAY+NLGNV K   +   A+  Y RA+   PN A+  GNLA
Sbjct:   207 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 266

Query:   244 STYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 303
               YYE+G  D+AI  Y++AI   P F +AY NL NALK+ G V EA  CYN  L L P+H
Sbjct:   267 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 326

Query:   304 PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNE 363
               +L NL NI  E   +  A   Y+  L V    +A  +NLA + +QQG   +A+  Y E
Sbjct:   327 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 386

Query:   364 VLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVE 423
              +RI P  AD   N GNT KE+  V  A+Q Y RAI I P  A+AH+NLAS +KDSG++ 
Sbjct:   387 AIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIP 446

Query:   424 AAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQ 483
              AI SY+ AL L+PDFP+A CNL H LQ VC W D D    ++  I+  Q+  + LPSV 
Sbjct:   447 EAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVH 506

Query:   484 PFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIXXXXXXXXXXXXYVS 543
             P H++ YP+       I+ ++ + C    +    PP+ HP  + +            YVS
Sbjct:   507 PHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVG----YVS 562

Query:   544 SDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSD- 602
             SDFGNHP SHLM S+ GMHN +  EVFCYALSP+DGT +R +  +EA HF+D+S +  + 
Sbjct:   563 SDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNG 622

Query:   603 MIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEF 662
               A  I++D I IL+N+NGYTKGARNE+FA++PAPIQ  ++G+PGT+GA ++DY++TD+ 
Sbjct:   623 KAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQE 682

Query:   663 VSPLRYAHIYSEKLVHVPHCYFVNDY 688
              SP   A  YSEKL ++PH +F+ D+
Sbjct:   683 TSPAEVAEQYSEKLAYMPHTFFIGDH 708

GO:0071300 "cellular response to retinoic acid" evidence=IEA

GO:0070688 "MLL5-L complex" evidence=IEA

GO:0051571 "positive regulation of histone H3-K4 methylation" evidence=IEA

GO:0048015 "phosphatidylinositol-mediated signaling" evidence=IEA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IEA

GO:0046626 "regulation of insulin receptor signaling pathway" evidence=IEA

GO:0045862 "positive regulation of proteolysis" evidence=IEA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IEA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IEA

GO:0035020 "regulation of Rac protein signal transduction" evidence=IEA

GO:0032868 "response to insulin stimulus" evidence=IEA

GO:0030854 "positive regulation of granulocyte differentiation" evidence=IEA

GO:0008047 "enzyme activator activity" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0006110 "regulation of glycolysis" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005547 "phosphatidylinositol-3,4,5-trisphosphate binding" evidence=IEA

GO:0000123 "histone acetyltransferase complex" evidence=IEA

UNIPROTKB|P81436 OGT "UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit" [Oryctolagus cuniculus (taxid:9986)]

 Score = 1517 (539.1 bits), Expect = 4.2e-206, Sum P(2) = 4.2e-206
 Identities = 302/686 (44%), Positives = 423/686 (61%)

Query:     5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64
             LAH+ Y++G ++ A  H   ++ + P  T  LLLL +I++Q    D     +  A++  P
Sbjct:    27 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 86

Query:    65 RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCC 124
               AE Y N+ N +KE+G +  AI +Y  A+ L+P+F D + NLA+A +  G +  A Q  
Sbjct:    87 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 146

Query:   125 RQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD 184
               AL  NP L    S+LGNL+KA G ++EA +CYL+A+  QP FA+AWSNL  +F   G+
Sbjct:   147 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 206

Query:   185 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLA 243
             +  A+ ++++AV L P F DAY+NLGNV K   +   A+  Y RA+   PN A+  GNLA
Sbjct:   207 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 266

Query:   244 STYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 303
               YYE+G  D+AI  Y++AI   P F +AY NL NALK+ G V EA  CYN  L L P+H
Sbjct:   267 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 326

Query:   304 PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNE 363
               +L NL NI  E   +  A   Y+  L V    +A  +NLA + +QQG   +A+  Y E
Sbjct:   327 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 386

Query:   364 VLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVE 423
              +RI P  AD   N GNT KE+  V  A+Q Y RAI I P  A+AH+NLAS +KDSG++ 
Sbjct:   387 AIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIP 446

Query:   424 AAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQ 483
              AI SY+ AL L+PDFP+A CNL H LQ VC W D D    ++  I+  Q+  + LPSV 
Sbjct:   447 EAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVH 506

Query:   484 PFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIXXXXXXXXXXXXYVS 543
             P H++ YP+       I+ ++ + C    +    PP+ HP  + +            YVS
Sbjct:   507 PHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVG----YVS 562

Query:   544 SDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSD- 602
             SDFGNHP SHLM S+ GMHN +  EVFCYALSP+DGT +R +  +EA HF+D+S +  + 
Sbjct:   563 SDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNG 622

Query:   603 MIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEF 662
               A  I++D I IL+N+NGYTKGARNE+FA++PAPIQ  ++G+PGT+GA ++DY++TD+ 
Sbjct:   623 KAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQE 682

Query:   663 VSPLRYAHIYSEKLVHVPHCYFVNDY 688
              SP   A  YSEKL ++PH +F+ D+
Sbjct:   683 TSPAEVAEQYSEKLAYMPHTFFIGDH 708

GO:0000123 "histone acetyltransferase complex" evidence=ISS

GO:0005547 "phosphatidylinositol-3,4,5-trisphosphate binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0006110 "regulation of glycolysis" evidence=ISS

GO:0006493 "protein O-linked glycosylation" evidence=ISS

GO:0006917 "induction of apoptosis" evidence=ISS

GO:0016262 "protein N-acetylglucosaminyltransferase activity" evidence=ISS

GO:0043981 "histone H4-K5 acetylation" evidence=ISS

GO:0043982 "histone H4-K8 acetylation" evidence=ISS

GO:0043984 "histone H4-K16 acetylation" evidence=ISS

GO:0048015 "phosphatidylinositol-mediated signaling" evidence=ISS

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=ISS

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=ISS

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=ISS

UNIPROTKB|O15294 OGT "UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit" [Homo sapiens (taxid:9606)]

 Score = 1517 (539.1 bits), Expect = 5.4e-206, Sum P(2) = 5.4e-206
 Identities = 302/686 (44%), Positives = 423/686 (61%)

Query:     5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64
             LAH+ Y++G ++ A  H   ++ + P  T  LLLL +I++Q    D     +  A++  P
Sbjct:    27 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 86

Query:    65 RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCC 124
               AE Y N+ N +KE+G +  AI +Y  A+ L+P+F D + NLA+A +  G +  A Q  
Sbjct:    87 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 146

Query:   125 RQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD 184
               AL  NP L    S+LGNL+KA G ++EA +CYL+A+  QP FA+AWSNL  +F   G+
Sbjct:   147 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 206

Query:   185 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLA 243
             +  A+ ++++AV L P F DAY+NLGNV K   +   A+  Y RA+   PN A+  GNLA
Sbjct:   207 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 266

Query:   244 STYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 303
               YYE+G  D+AI  Y++AI   P F +AY NL NALK+ G V EA  CYN  L L P+H
Sbjct:   267 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 326

Query:   304 PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNE 363
               +L NL NI  E   +  A   Y+  L V    +A  +NLA + +QQG   +A+  Y E
Sbjct:   327 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 386

Query:   364 VLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVE 423
              +RI P  AD   N GNT KE+  V  A+Q Y RAI I P  A+AH+NLAS +KDSG++ 
Sbjct:   387 AIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIP 446

Query:   424 AAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQ 483
              AI SY+ AL L+PDFP+A CNL H LQ VC W D D    ++  I+  Q+  + LPSV 
Sbjct:   447 EAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVH 506

Query:   484 PFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIXXXXXXXXXXXXYVS 543
             P H++ YP+       I+ ++ + C    +    PP+ HP  + +            YVS
Sbjct:   507 PHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVG----YVS 562

Query:   544 SDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSD- 602
             SDFGNHP SHLM S+ GMHN +  EVFCYALSP+DGT +R +  +EA HF+D+S +  + 
Sbjct:   563 SDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNG 622

Query:   603 MIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEF 662
               A  I++D I IL+N+NGYTKGARNE+FA++PAPIQ  ++G+PGT+GA ++DY++TD+ 
Sbjct:   623 KAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQE 682

Query:   663 VSPLRYAHIYSEKLVHVPHCYFVNDY 688
              SP   A  YSEKL ++PH +F+ D+
Sbjct:   683 TSPAEVAEQYSEKLAYMPHTFFIGDH 708

GO:0006915 "apoptotic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016262 "protein N-acetylglucosaminyltransferase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0045862 "positive regulation of proteolysis" evidence=IDA

GO:0006493 "protein O-linked glycosylation" evidence=IMP;IDA

GO:0070688 "MLL5-L complex" evidence=IDA

GO:0043984 "histone H4-K16 acetylation" evidence=IDA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IDA

GO:0000123 "histone acetyltransferase complex" evidence=IDA

GO:0043981 "histone H4-K5 acetylation" evidence=IDA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IDA

GO:0043982 "histone H4-K8 acetylation" evidence=IDA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IDA

GO:0048015 "phosphatidylinositol-mediated signaling" evidence=IDA

GO:0005547 "phosphatidylinositol-3,4,5-trisphosphate binding" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0035020 "regulation of Rac protein signal transduction" evidence=IDA

GO:0032868 "response to insulin stimulus" evidence=IDA

GO:0046626 "regulation of insulin receptor signaling pathway" evidence=IDA

GO:0006917 "induction of apoptosis" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP;IDA

GO:0080182 "histone H3-K4 trimethylation" evidence=IMP

GO:0006110 "regulation of glycolysis" evidence=IDA

GO:0007165 "signal transduction" evidence=TAS

GO:0007584 "response to nutrient" evidence=TAS

GO:0008375 "acetylglucosaminyltransferase activity" evidence=TAS

GO:0051571 "positive regulation of histone H3-K4 methylation" evidence=IDA

GO:0008047 "enzyme activator activity" evidence=IDA

GO:0030854 "positive regulation of granulocyte differentiation" evidence=IMP

GO:0071300 "cellular response to retinoic acid" evidence=IMP

GO:0043085 "positive regulation of catalytic activity" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

UNIPROTKB|F1NX56 OGT "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 1515 (538.4 bits), Expect = 5.4e-206, Sum P(2) = 5.4e-206
 Identities = 303/686 (44%), Positives = 424/686 (61%)

Query:     5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64
             LAH+ Y++G ++ A  H   ++ + P  T  LLLL +I++Q    D     +  A++  P
Sbjct:    17 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 76

Query:    65 RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCC 124
               AE Y N+ N +KE+G +  AI +Y  A+ L+P+F D + NLA+A +  G +  A Q  
Sbjct:    77 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 136

Query:   125 RQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD 184
               AL  NP L    S+LGNL+KA G ++EA +CYL+A+  QP FA+AWSNL  +F   G+
Sbjct:   137 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 196

Query:   185 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLA 243
             +  A+ ++++AV L P F DAY+NLGNV K   +   A+  Y RA+   PN A+  GNLA
Sbjct:   197 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 256

Query:   244 STYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 303
               YYE+G  D+AI  Y++AI   P F +AY NL NALK+ G V EA +CYN  L L P+H
Sbjct:   257 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEECYNTALRLCPTH 316

Query:   304 PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNE 363
               +L NL NI  E   +  A   Y+  L V    +A  +NLA + +QQG   +A+  Y E
Sbjct:   317 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 376

Query:   364 VLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVE 423
              +RI P  AD   N GNT KE+  V  A+Q Y RAI I P  A+AH+NLAS +KDSG++ 
Sbjct:   377 AIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIP 436

Query:   424 AAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQ 483
              AI SY+ AL L+PDFP+A CNL H LQ VC W D D    ++  I+  Q+  + LPSV 
Sbjct:   437 EAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVH 496

Query:   484 PFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIXXXXXXXXXXXXYVS 543
             P H++ YP+       I+ ++ + C    +    PP+ HP  +              YVS
Sbjct:   497 PHHSMLYPLSHSFRKAIAERHGNLCLDKINVLHKPPYEHPKDLK----ASEGRLRIGYVS 552

Query:   544 SDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSD- 602
             SDFGNHP SHLM S+ GMHN +  EVFCYALSP+DGT +R +  +EA HFVD+S +  + 
Sbjct:   553 SDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFVDLSQIPCNG 612

Query:   603 MIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEF 662
               A  I++D I ILIN+NGYTKGARNE+FA++PAPIQ  ++G+PGT+GA ++DY++TD+ 
Sbjct:   613 KAADRIHQDGIHILINMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDKE 672

Query:   663 VSPLRYAHIYSEKLVHVPHCYFVNDY 688
              SP+  A  YSEKL ++P+ +F+ D+
Sbjct:   673 TSPVEVAEQYSEKLAYMPNTFFIGDH 698

GO:0000123 "histone acetyltransferase complex" evidence=IEA

GO:0005547 "phosphatidylinositol-3,4,5-trisphosphate binding" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006110 "regulation of glycolysis" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0008047 "enzyme activator activity" evidence=IEA

GO:0030854 "positive regulation of granulocyte differentiation" evidence=IEA

GO:0032868 "response to insulin stimulus" evidence=IEA

GO:0035020 "regulation of Rac protein signal transduction" evidence=IEA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IEA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IEA

GO:0045862 "positive regulation of proteolysis" evidence=IEA

GO:0046626 "regulation of insulin receptor signaling pathway" evidence=IEA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IEA

GO:0048015 "phosphatidylinositol-mediated signaling" evidence=IEA

GO:0051571 "positive regulation of histone H3-K4 methylation" evidence=IEA

GO:0070688 "MLL5-L complex" evidence=IEA

GO:0071300 "cellular response to retinoic acid" evidence=IEA

UNIPROTKB|E2QSQ5 OGT "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1517 (539.1 bits), Expect = 8.8e-206, Sum P(2) = 8.8e-206
 Identities = 302/686 (44%), Positives = 423/686 (61%)

Query:     5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64
             LAH+ Y++G ++ A  H   ++ + P  T  LLLL +I++Q    D     +  A++  P
Sbjct:    27 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 86

Query:    65 RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCC 124
               AE Y N+ N +KE+G +  AI +Y  A+ L+P+F D + NLA+A +  G +  A Q  
Sbjct:    87 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 146

Query:   125 RQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD 184
               AL  NP L    S+LGNL+KA G ++EA +CYL+A+  QP FA+AWSNL  +F   G+
Sbjct:   147 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 206

Query:   185 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLA 243
             +  A+ ++++AV L P F DAY+NLGNV K   +   A+  Y RA+   PN A+  GNLA
Sbjct:   207 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 266

Query:   244 STYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 303
               YYE+G  D+AI  Y++AI   P F +AY NL NALK+ G V EA  CYN  L L P+H
Sbjct:   267 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 326

Query:   304 PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNE 363
               +L NL NI  E   +  A   Y+  L V    +A  +NLA + +QQG   +A+  Y E
Sbjct:   327 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 386

Query:   364 VLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVE 423
              +RI P  AD   N GNT KE+  V  A+Q Y RAI I P  A+AH+NLAS +KDSG++ 
Sbjct:   387 AIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIP 446

Query:   424 AAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQ 483
              AI SY+ AL L+PDFP+A CNL H LQ VC W D D    ++  I+  Q+  + LPSV 
Sbjct:   447 EAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVH 506

Query:   484 PFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIXXXXXXXXXXXXYVS 543
             P H++ YP+       I+ ++ + C    +    PP+ HP  + +            YVS
Sbjct:   507 PHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVG----YVS 562

Query:   544 SDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSD- 602
             SDFGNHP SHLM S+ GMHN +  EVFCYALSP+DGT +R +  +EA HF+D+S +  + 
Sbjct:   563 SDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNG 622

Query:   603 MIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEF 662
               A  I++D I IL+N+NGYTKGARNE+FA++PAPIQ  ++G+PGT+GA ++DY++TD+ 
Sbjct:   623 KAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQE 682

Query:   663 VSPLRYAHIYSEKLVHVPHCYFVNDY 688
              SP   A  YSEKL ++PH +F+ D+
Sbjct:   683 TSPAEVAEQYSEKLAYMPHTFFIGDH 708

GO:0071300 "cellular response to retinoic acid" evidence=IEA

GO:0070688 "MLL5-L complex" evidence=IEA

GO:0051571 "positive regulation of histone H3-K4 methylation" evidence=IEA

GO:0048015 "phosphatidylinositol-mediated signaling" evidence=IEA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IEA

GO:0046626 "regulation of insulin receptor signaling pathway" evidence=IEA

GO:0045862 "positive regulation of proteolysis" evidence=IEA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IEA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IEA

GO:0035020 "regulation of Rac protein signal transduction" evidence=IEA

GO:0032868 "response to insulin stimulus" evidence=IEA

GO:0030854 "positive regulation of granulocyte differentiation" evidence=IEA

GO:0008047 "enzyme activator activity" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0006110 "regulation of glycolysis" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005547 "phosphatidylinositol-3,4,5-trisphosphate binding" evidence=IEA

GO:0000123 "histone acetyltransferase complex" evidence=IEA

UNIPROTKB|Q27HV0 OGT "UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit" [Sus scrofa (taxid:9823)]

 Score = 1517 (539.1 bits), Expect = 1.1e-205, Sum P(2) = 1.1e-205
 Identities = 302/686 (44%), Positives = 423/686 (61%)

Query:     5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64
             LAH+ Y++G ++ A  H   ++ + P  T  LLLL +I++Q    D     +  A++  P
Sbjct:    27 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 86

Query:    65 RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCC 124
               AE Y N+ N +KE+G +  AI +Y  A+ L+P+F D + NLA+A +  G +  A Q  
Sbjct:    87 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 146

Query:   125 RQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD 184
               AL  NP L    S+LGNL+KA G ++EA +CYL+A+  QP FA+AWSNL  +F   G+
Sbjct:   147 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 206

Query:   185 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLA 243
             +  A+ ++++AV L P F DAY+NLGNV K   +   A+  Y RA+   PN A+  GNLA
Sbjct:   207 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 266

Query:   244 STYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 303
               YYE+G  D+AI  Y++AI   P F +AY NL NALK+ G V EA  CYN  L L P+H
Sbjct:   267 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 326

Query:   304 PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNE 363
               +L NL NI  E   +  A   Y+  L V    +A  +NLA + +QQG   +A+  Y E
Sbjct:   327 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 386

Query:   364 VLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVE 423
              +RI P  AD   N GNT KE+  V  A+Q Y RAI I P  A+AH+NLAS +KDSG++ 
Sbjct:   387 AIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIP 446

Query:   424 AAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQ 483
              AI SY+ AL L+PDFP+A CNL H LQ VC W D D    ++  I+  Q+  + LPSV 
Sbjct:   447 EAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVH 506

Query:   484 PFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIXXXXXXXXXXXXYVS 543
             P H++ YP+       I+ ++ + C    +    PP+ HP  + +            YVS
Sbjct:   507 PHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVG----YVS 562

Query:   544 SDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSD- 602
             SDFGNHP SHLM S+ GMHN +  EVFCYALSP+DGT +R +  +EA HF+D+S +  + 
Sbjct:   563 SDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNG 622

Query:   603 MIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEF 662
               A  I++D I IL+N+NGYTKGARNE+FA++PAPIQ  ++G+PGT+GA ++DY++TD+ 
Sbjct:   623 KAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQE 682

Query:   663 VSPLRYAHIYSEKLVHVPHCYFVNDY 688
              SP   A  YSEKL ++PH +F+ D+
Sbjct:   683 TSPAEVAEQYSEKLAYMPHTFFIGDH 708

GO:0006110 "regulation of glycolysis" evidence=ISS

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=ISS

GO:0016262 "protein N-acetylglucosaminyltransferase activity" evidence=ISS

GO:0000123 "histone acetyltransferase complex" evidence=ISS

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=ISS

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=ISS

GO:0043984 "histone H4-K16 acetylation" evidence=ISS

GO:0043982 "histone H4-K8 acetylation" evidence=ISS

GO:0043981 "histone H4-K5 acetylation" evidence=ISS

GO:0006917 "induction of apoptosis" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0005547 "phosphatidylinositol-3,4,5-trisphosphate binding" evidence=ISS

GO:0048015 "phosphatidylinositol-mediated signaling" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0045862 "positive regulation of proteolysis" evidence=ISS

GO:0006493 "protein O-linked glycosylation" evidence=ISS

RGD|62060 Ogt "O-linked N-acetylglucosamine (GlcNAc) transferase" [Rattus norvegicus (taxid:10116)]

 Score = 1519 (539.8 bits), Expect = 3.0e-205, Sum P(2) = 3.0e-205
 Identities = 302/686 (44%), Positives = 423/686 (61%)

Query:     5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64
             LAH+ Y++G ++ A  H   ++ + P  T  LLLL +I++Q    D     +  A++  P
Sbjct:    17 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 76

Query:    65 RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCC 124
               AE Y N+ N +KE+G +  AI +Y  A+ L+P+F D + NLA+A +  G +  A Q  
Sbjct:    77 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 136

Query:   125 RQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD 184
               AL  NP L    S+LGNL+KA G ++EA +CYL+A+  QP FA+AWSNL  +F   G+
Sbjct:   137 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 196

Query:   185 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLA 243
             +  A+ ++++AV L P F DAY+NLGNV K   +   A+  Y RA+   PN A+  GNLA
Sbjct:   197 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 256

Query:   244 STYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 303
               YYE+G  D+AI  Y++AI   P F +AY NL NALK+ G V EA  CYN  L L P+H
Sbjct:   257 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 316

Query:   304 PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNE 363
               +L NL NI  E   +  A   Y+  L V    +A  +NLA + +QQG   +A+  Y E
Sbjct:   317 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 376

Query:   364 VLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVE 423
              +RI P  AD   N GNT KE+  V  A+Q Y RAI I P  A+AH+NLAS +KDSG++ 
Sbjct:   377 AIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIP 436

Query:   424 AAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQ 483
              AI SY+ AL L+PDFP+A CNL H LQ VC W D D    ++  I+  Q+  + LPSV 
Sbjct:   437 EAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAEQLEKNRLPSVH 496

Query:   484 PFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIXXXXXXXXXXXXYVS 543
             P H++ YP+       I+ ++ + C    +    PP+ HP  + +            YVS
Sbjct:   497 PHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVG----YVS 552

Query:   544 SDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSD- 602
             SDFGNHP SHLM S+ GMHN +  EVFCYALSP+DGT +R +  +EA HF+D+S +  + 
Sbjct:   553 SDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNG 612

Query:   603 MIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEF 662
               A  I++D I IL+N+NGYTKGARNE+FA++PAPIQ  ++G+PGT+GA ++DY++TD+ 
Sbjct:   613 KAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQE 672

Query:   663 VSPLRYAHIYSEKLVHVPHCYFVNDY 688
              SP   A  YSEKL ++PH +F+ D+
Sbjct:   673 TSPAEVAEQYSEKLAYMPHTFFIGDH 698

GO:0000123 "histone acetyltransferase complex" evidence=IEA;ISO;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005547 "phosphatidylinositol-3,4,5-trisphosphate binding" evidence=IEA;ISO;ISS

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005813 "centrosome" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=ISO;IDA

GO:0005886 "plasma membrane" evidence=IEA;ISO;ISS

GO:0006110 "regulation of glycolysis" evidence=IEA;ISO;ISS

GO:0006493 "protein O-linked glycosylation" evidence=ISO;IDA

GO:0006917 "induction of apoptosis" evidence=IEA;ISO;ISS

GO:0008047 "enzyme activator activity" evidence=IEA;ISO

GO:0016262 "protein N-acetylglucosaminyltransferase activity" evidence=ISO;IDA

GO:0030854 "positive regulation of granulocyte differentiation" evidence=IEA;ISO

GO:0032868 "response to insulin stimulus" evidence=IEA;ISO

GO:0035020 "regulation of Rac protein signal transduction" evidence=IEA;ISO

GO:0042277 "peptide binding" evidence=IDA

GO:0043085 "positive regulation of catalytic activity" evidence=ISO

GO:0043981 "histone H4-K5 acetylation" evidence=ISO;ISS

GO:0043982 "histone H4-K8 acetylation" evidence=ISO;ISS

GO:0043984 "histone H4-K16 acetylation" evidence=ISO;ISS

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IEA;ISO;ISS

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IEA;ISO;ISS

GO:0045862 "positive regulation of proteolysis" evidence=IEA;ISO;ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0046626 "regulation of insulin receptor signaling pathway" evidence=IEA;ISO

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IEA;ISO;ISS

GO:0048015 "phosphatidylinositol-mediated signaling" evidence=IEA;ISO;ISS

GO:0048029 "monosaccharide binding" evidence=IDA

GO:0051571 "positive regulation of histone H3-K4 methylation" evidence=IEA;ISO

GO:0070207 "protein homotrimerization" evidence=IDA

GO:0070688 "MLL5-L complex" evidence=IEA;ISO

GO:0071300 "cellular response to retinoic acid" evidence=IEA;ISO

GO:0080182 "histone H3-K4 trimethylation" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M8Y0	SEC_ARATH	2, ., 4, ., 1, ., -	0.8610	0.9966	0.9048	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.4.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	887
COG3914	620	COG3914, Spy, Predicted O-linked N-acetylglucosami	4e-97
pfam13844	468	pfam13844, Glyco_transf_41, Glycosyl transferase f	6e-72
pfam13844	468	pfam13844, Glyco_transf_41, Glycosyl transferase f	2e-70
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	3e-32
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	4e-31
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	1e-28
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-28
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	7e-27
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	3e-25
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	2e-23
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-22
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-22
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	3e-22
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	4e-21
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-18
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	3e-18
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	5e-18
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	7e-18
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-17
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	2e-17
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	4e-17
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-16
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	2e-16
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	3e-15
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	8e-14
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	3e-13
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	3e-13
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	4e-13
pfam13414	69	pfam13414, TPR_11, TPR repeat	6e-13
COG3063	250	COG3063, PilF, Tfp pilus assembly protein PilF [Ce	6e-12
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-11
pfam13414	69	pfam13414, TPR_11, TPR repeat	1e-11
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	2e-11
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	1e-10
COG4783	484	COG4783, COG4783, Putative Zn-dependent protease,	1e-10
pfam13414	69	pfam13414, TPR_11, TPR repeat	3e-10
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-09
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	3e-09
pfam13414	69	pfam13414, TPR_11, TPR repeat	3e-09
pfam13414	69	pfam13414, TPR_11, TPR repeat	9e-09
COG3063	250	COG3063, PilF, Tfp pilus assembly protein PilF [Ce	1e-08
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-08
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-08
COG3063	250	COG3063, PilF, Tfp pilus assembly protein PilF [Ce	2e-08
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	2e-08
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	2e-08
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	6e-08
COG3063	250	COG3063, PilF, Tfp pilus assembly protein PilF [Ce	1e-07
COG4783	484	COG4783, COG4783, Putative Zn-dependent protease,	1e-07
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	1e-07
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-07
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	3e-07
PRK11447	1157	PRK11447, PRK11447, cellulose synthase subunit Bcs	3e-07
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	4e-07
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	4e-07
PRK11447	1157	PRK11447, PRK11447, cellulose synthase subunit Bcs	4e-07
pfam13414	69	pfam13414, TPR_11, TPR repeat	9e-07
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	2e-06
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	3e-06
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	3e-06
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	4e-06
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	6e-06
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	6e-06
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	7e-06
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	7e-06
COG4783	484	COG4783, COG4783, Putative Zn-dependent protease,	1e-05
TIGR03939	800	TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-g	1e-05
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	2e-05
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	2e-05
COG5010	257	COG5010, TadD, Flp pilus assembly protein TadD, co	2e-05
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	2e-05
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	2e-05
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	3e-05
COG5010	257	COG5010, TadD, Flp pilus assembly protein TadD, co	3e-05
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	3e-05
pfam07719	34	pfam07719, TPR_2, Tetratricopeptide repeat	3e-05
COG5010	257	COG5010, TadD, Flp pilus assembly protein TadD, co	4e-05
COG2956	389	COG2956, COG2956, Predicted N-acetylglucosaminyl t	4e-05
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	5e-05
pfam13431	34	pfam13431, TPR_17, Tetratricopeptide repeat	6e-05
pfam13431	34	pfam13431, TPR_17, Tetratricopeptide repeat	8e-05
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	9e-05
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-04
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	1e-04
smart01043	145	smart01043, BTAD, Bacterial transcriptional activa	1e-04
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	1e-04
pfam13181	34	pfam13181, TPR_8, Tetratricopeptide repeat	2e-04
PRK11788	389	PRK11788, PRK11788, tetratricopeptide repeat prote	2e-04
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	3e-04
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	3e-04
pfam13431	34	pfam13431, TPR_17, Tetratricopeptide repeat	3e-04
COG4783	484	COG4783, COG4783, Putative Zn-dependent protease,	4e-04
pfam07719	34	pfam07719, TPR_2, Tetratricopeptide repeat	4e-04
PRK02603	172	PRK02603, PRK02603, photosystem I assembly protein	4e-04
CHL00033	168	CHL00033, ycf3, photosystem I assembly protein Ycf	4e-04
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	5e-04
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	5e-04
TIGR03939	800	TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-g	5e-04
PRK11788	389	PRK11788, PRK11788, tetratricopeptide repeat prote	5e-04
PRK11447	1157	PRK11447, PRK11447, cellulose synthase subunit Bcs	6e-04
pfam07719	34	pfam07719, TPR_2, Tetratricopeptide repeat	7e-04
pfam13414	69	pfam13414, TPR_11, TPR repeat	0.001
TIGR03939	800	TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-g	0.001
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	0.001
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	0.001
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	0.001
PRK02603	172	PRK02603, PRK02603, photosystem I assembly protein	0.001
TIGR00540	367	TIGR00540, TPR_hemY_coli, heme biosynthesis-associ	0.001
COG4783	484	COG4783, COG4783, Putative Zn-dependent protease,	0.002
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	0.002
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	0.002
TIGR03939	800	TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-g	0.002
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	0.002
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	0.003
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	0.003
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	0.003
COG5010	257	COG5010, TadD, Flp pilus assembly protein TadD, co	0.003
COG5010	257	COG5010, TadD, Flp pilus assembly protein TadD, co	0.003
pfam13181	34	pfam13181, TPR_8, Tetratricopeptide repeat	0.003
pfam13181	34	pfam13181, TPR_8, Tetratricopeptide repeat	0.003
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	0.004
pfam07719	34	pfam07719, TPR_2, Tetratricopeptide repeat	0.004
pfam13181	34	pfam13181, TPR_8, Tetratricopeptide repeat	0.004

>gnl|CDD|226428 COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

 Score =  316 bits (812), Expect = 4e-97
 Identities = 171/550 (31%), Positives = 259/550 (47%), Gaps = 31/550 (5%)

Query: 342 NNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIR-AIT 400
             L+++     +   A       L ++P     + N     +  G    A+ D    A  
Sbjct: 71  AFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEW 130

Query: 401 IRPTMAEAHANLASAYKDS------GHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVC 454
           + P  AE   +L   Y+        G    A  + ++A+ L P +P     L+   Q  C
Sbjct: 131 LSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQC 190

Query: 455 SWEDRDRMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASR 514
           SW          E        +++   +  F       DP+  L I+ +     S  A  
Sbjct: 191 SWP--------EEAPTNLLSQLALFLGIYGFSLAYLADDPLKNLAIANQLLKILSQNAP- 241

Query: 515 FALPPFNHPV-PIPIRLDGGLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYA 573
             L  F  P+    I+ +G  +RLRVGY+SSD  +H +  L+  VF  H+++  EVF Y+
Sbjct: 242 -ELVRF--PIRDENIKRNG--KRLRVGYLSSDLRSHAVGFLLRWVFEYHDRDKFEVFAYS 296

Query: 574 LSPNDGTEWRQRTQSEAEHFVDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAM 633
           L P      ++R  +  E +  +  M    IA  I  D I IL++L+G+T   R ++FA 
Sbjct: 297 LGPPHTDALQERISAAVEKWYPIGRMDDAEIANAIRTDGIDILVDLDGHTVDTRCQVFAH 356

Query: 634 QPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNM 693
           +PAPIQVS++G+P TTG+  +DY ++D +  P      YSEKL  +P CY   D  +   
Sbjct: 357 RPAPIQVSWLGYPATTGSPNMDYFISDPYTVPPTAEEYYSEKLWRLPQCYQPVDGFEPV- 415

Query: 694 DVLDPNCQPKRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA 753
                   P R+  GLPED  +F CFN  +K+ PE+F  W  IL  VPNS L L      
Sbjct: 416 -----TPPPSRAQLGLPEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDD 470

Query: 754 GEM--RLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWA 811
            E+  RLR  A  +GV  +++ F   A  ++H  R  +ADL LDT     HTT +D LW 
Sbjct: 471 AEINARLRDLAEREGVDSERLRFLPPAPNEDHRARYGIADLVLDTYPYGGHTTASDALWM 530

Query: 812 GLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLK 871
           G+P++T   E+ A+R   S+    G+  E++ +S  +Y E+AV+   DR   Q +  +LK
Sbjct: 531 GVPVLTRVGEQFASRNGASIATNAGI-PELVADSRADYVEKAVAFGSDRALRQQVRAELK 589

Query: 872 SVRLTCPLFD 881
             R T PLFD
Sbjct: 590 RSRQTSPLFD 599

Length = 620

>gnl|CDD|206015 pfam13844, Glyco_transf_41, Glycosyl transferase family 41

 Score =  244 bits (624), Expect = 6e-72
 Identities = 92/155 (59%), Positives = 124/155 (80%), Gaps = 1/155 (0%)

Query: 537 LRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDV 596
           LR+GYVSSDFGNHP SHLM S+ GMHN+  VEVFCYALSP+DGT +R +  +E+EHFVD+
Sbjct: 1   LRIGYVSSDFGNHPTSHLMQSIPGMHNRSKVEVFCYALSPDDGTNFRSKVMAESEHFVDL 60

Query: 597 SAMSSD-MIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYID 655
           S +  +   A  I++D I IL+N+NGYTKGARNEIFA++PAPIQV ++G+PGT+GA+++D
Sbjct: 61  SQIPCNGKAADRIHQDGIHILVNMNGYTKGARNEIFALRPAPIQVMWLGYPGTSGATFMD 120

Query: 656 YLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQ 690
           Y++TD   SP+  A  YSEKL ++PH +F+ D+ Q
Sbjct: 121 YIITDSVTSPMELADQYSEKLAYMPHTFFIGDHAQ 155

This family of glycosyltransferases includes O-linked beta-N-acetylglucosamine (O-GlcNAc) transferase, an enzyme which catalyzes the addition of O-GlcNAc to serine and threonine residues. In addition to its function as an O-GlcNAc transferase, human OGT, also appears to proteolytically cleave the epigenetic cell-cycle regulator HCF-1. Length = 468

>gnl|CDD|206015 pfam13844, Glyco_transf_41, Glycosyl transferase family 41

 Score =  240 bits (614), Expect = 2e-70
 Identities = 94/179 (52%), Positives = 123/179 (68%), Gaps = 1/179 (0%)

Query: 704 RSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAV 763
           R  YGLP+D  ++  FNQLYK+DP     W NIL+RVPNS LWLLRFPA GE  ++AYA 
Sbjct: 276 RQQYGLPDDAIVYCNFNQLYKIDPSTLQMWVNILKRVPNSVLWLLRFPAVGEANIQAYAQ 335

Query: 764 AQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKM 823
             G+ P +I+F++VA K+EH+RR  LAD+ LDTPLCN HTTG D+LWAG PM+T+PLE +
Sbjct: 336 EMGLPPRRIVFSNVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPLETL 395

Query: 824 ATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDT 882
           A+RVA S     G   E+I    +EYE+ AV L  DR+ L+ +  K+   R +  LF+T
Sbjct: 396 ASRVAASQLTTLGC-PELIAKDRQEYEDIAVKLGTDREYLRKIRAKVWKARTSSTLFNT 453

This family of glycosyltransferases includes O-linked beta-N-acetylglucosamine (O-GlcNAc) transferase, an enzyme which catalyzes the addition of O-GlcNAc to serine and threonine residues. In addition to its function as an O-GlcNAc transferase, human OGT, also appears to proteolytically cleave the epigenetic cell-cycle regulator HCF-1. Length = 468

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score =  134 bits (340), Expect = 3e-32
 Identities = 101/410 (24%), Positives = 162/410 (39%), Gaps = 7/410 (1%)

Query: 27  ERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLA 86
           +    R D LL+L   Y +   +D  +A  ++  + +P  A  +  +   +  KGD+  A
Sbjct: 427 DPELGRADLLLILS--YLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKA 484

Query: 87  IRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMK 146
              +  A+ + P+F  A +NLA   +++G  ++A Q   + L ++P  + A   L  L  
Sbjct: 485 REAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYL 544

Query: 147 AQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAY 206
             G  +EA +   +A  + P        LA  ++  G L +AL    EA    P  P+A+
Sbjct: 545 RTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAW 604

Query: 207 LNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGC 265
           L LG    A G   +A+  +++ +  +P +A+A   LA  Y        AI   K+A+  
Sbjct: 605 LMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALEL 664

Query: 266 DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAAS 325
            P   EA   L   L    R + A +         P         G++Y+     PAA  
Sbjct: 665 KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQ 724

Query: 326 YYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEI 385
            Y+  L      S     L       GN A+A+      L+  P  A         Y   
Sbjct: 725 AYRKALK-RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQ 783

Query: 386 GRVTDAIQDYIRAITIRPTMAEAHANLASAY---KDSGHVEAAIKSYKQA 432
                AI+ Y   +   P  A    NLA  Y   KD   +E A ++ K A
Sbjct: 784 KDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKDPRALEYAERALKLA 833

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score =  131 bits (331), Expect = 4e-31
 Identities = 105/430 (24%), Positives = 174/430 (40%), Gaps = 1/430 (0%)

Query: 9   MYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAE 68
            Y+ G+ +QA ++ N + +  P       LL +I  +L   D  IA    AL L+P    
Sbjct: 305 EYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPA 364

Query: 69  CYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQAL 128
               +  A+   GD + A  Y   A EL P  A A + L  + + +G  +EA      A 
Sbjct: 365 ALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAA 424

Query: 129 ALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRA 188
            L+P L  A   L       G   +A +   +  + QP  A   + L  +++  GDL +A
Sbjct: 425 QLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKA 484

Query: 189 LQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAI-AFGNLASTYY 247
            + +++A+ ++P F  A  NL  +    G P +AI  +++ +   P  + A   LA  Y 
Sbjct: 485 REAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYL 544

Query: 248 ERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQAL 307
             G  + A+ + ++A   +P+ +E    L       G++ +A+   N+     P  P+A 
Sbjct: 545 RTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAW 604

Query: 308 TNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI 367
             LG   +    L  A S +K  LA+    +     LA  Y    NYA AI+     L +
Sbjct: 605 LMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALEL 664

Query: 368 DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIK 427
            P   +  +          R   A +         P  A         Y       AAI+
Sbjct: 665 KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQ 724

Query: 428 SYKQALLLRP 437
           +Y++AL   P
Sbjct: 725 AYRKALKRAP 734

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score =  123 bits (310), Expect = 1e-28
 Identities = 106/433 (24%), Positives = 173/433 (39%), Gaps = 33/433 (7%)

Query: 10  YKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAEC 69
           ++  +Y+ A E      +  P     LLL GA  YQL + +       + L+  P   + 
Sbjct: 272 FQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQA 331

Query: 70  YGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALA 129
              +A+     G +D AI     A+ L P+   A S L  AY+  G   +AA+   +A  
Sbjct: 332 RRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATE 391

Query: 130 LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRAL 189
           L+P    A + LG    +QG   EA +    A ++ P    A   L   ++ SG  ++AL
Sbjct: 392 LDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKAL 451

Query: 190 QYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYER 249
                A KL+   PD                              NA     L + Y  +
Sbjct: 452 ---AAAKKLEKKQPD------------------------------NASLHNLLGAIYLGK 478

Query: 250 GQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTN 309
           G    A   +++A+  +P F  A  NL       G  D+AIQ + + L++ P + +A+  
Sbjct: 479 GDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILA 538

Query: 310 LGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP 369
           L  +Y+       A ++ +    +      P   LA  Y  +G    A++  NE     P
Sbjct: 539 LAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAP 598

Query: 370 LAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSY 429
            + +  +  G      G +  A+  + + + ++P  A A   LA AY    +   AI S 
Sbjct: 599 DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSL 658

Query: 430 KQALLLRPDFPEA 442
           K+AL L+PD  EA
Sbjct: 659 KRALELKPDNTEA 671

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score =  122 bits (308), Expect = 2e-28
 Identities = 109/475 (22%), Positives = 178/475 (37%), Gaps = 35/475 (7%)

Query: 3   MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRL 62
           + LA        + +A    + V   +P   D LLL G +   L + ++ +A   +A+ L
Sbjct: 163 LGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIAL 222

Query: 63  EPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPN-----------------FADAWS 105
            P        +A    E G+ + A ++    ++  PN                 + DA  
Sbjct: 223 RPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARE 282

Query: 106 NLASA-----------------YMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQ 148
            L  A                   + G L +A Q   Q L   P    A   L ++    
Sbjct: 283 TLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRL 342

Query: 149 GLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLN 208
           G V EA +    AL + P    A S L   ++  GD  +A +Y  +A +L P    A   
Sbjct: 343 GRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQ 402

Query: 209 LGNVYKALGMPQEAIMCYQRAVQTRPNAIAFG-NLASTYYERGQADMAILYYKQAIGCDP 267
           LG    + G P EAI   + A Q  P        L  +Y   GQ D A+   K+     P
Sbjct: 403 LGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQP 462

Query: 268 RFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYY 327
                +N LG      G + +A + + + LS++P    A  NL  I ++      A   +
Sbjct: 463 DNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRF 522

Query: 328 KATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGR 387
           +  L +          LA +Y + GN  +A++   +   ++P   +  +     Y   G+
Sbjct: 523 EKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQ 582

Query: 388 VTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 442
           +  A+     A    P   EA   L  A   +G +  A+ S+K+ L L+PD   A
Sbjct: 583 LKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALA 637

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score =  117 bits (295), Expect = 7e-27
 Identities = 107/461 (23%), Positives = 173/461 (37%), Gaps = 37/461 (8%)

Query: 2   HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
            + L     +SG + +AL  +  + ++ P       LLGAIY    D        E+AL 
Sbjct: 434 DLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALS 493

Query: 62  LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGR----- 116
           +EP F     N+A    ++G+ D AI+ +   + + P    A   LA  Y+R G      
Sbjct: 494 IEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAV 553

Query: 117 --LNEAAQCCRQALALNPLLVDAHSNLGNLMKA--------------------------- 147
             L +AA+   Q +     L   +   G L KA                           
Sbjct: 554 AWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLA 613

Query: 148 QGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYL 207
            G + +A S + + L +QP  A+A   LA  +    +  +A+   K A++LKP   +A +
Sbjct: 614 AGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQI 673

Query: 208 NLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCD 266
            L  +  A    + A    +   +  P  A+ F      Y  +     AI  Y++A+   
Sbjct: 674 GLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA 733

Query: 267 PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASY 326
           P    A   L  AL   G   EA++     L   P+     T L  +Y+       A  +
Sbjct: 734 PSSQNAIK-LHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKH 792

Query: 327 YKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIG 386
           Y+  +      +   NNLA +Y +  +   A+      L++ P     L   G    E G
Sbjct: 793 YQTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAERALKLAPNIPAILDTLGWLLVEKG 851

Query: 387 RVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIK 427
               A+    +A+ I P  A    +LA A   +G    A K
Sbjct: 852 EADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARK 892

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score =  112 bits (282), Expect = 3e-25
 Identities = 106/442 (23%), Positives = 179/442 (40%), Gaps = 12/442 (2%)

Query: 13  GSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRL-EPRFAECYG 71
           G Y  A +           +   L LL   Y     +   +        L +   AE   
Sbjct: 70  GDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLA 129

Query: 72  NMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALN 131
               A+   G ++LA + Y  A+ + P    A   LA   + + R +EA     + L  +
Sbjct: 130 LRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTAD 189

Query: 132 PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQY 191
           P  VDA    G+L+ + G ++ A + Y +A+ ++P        LA + +E+G+   A ++
Sbjct: 190 PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKH 249

Query: 192 YKEAVKLKPTFPDAYLNLGNVYKAL-----GMPQEAIMCYQRAVQTRPNAIAFGNLAS-T 245
               +K  P  P     L +  KAL        ++A    Q A+++ P  +    LA  +
Sbjct: 250 ADALLKKAPNSP-----LAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGAS 304

Query: 246 YYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQ 305
            Y+ G  + A  Y  Q +   P   +A   L +    +GRVDEAI   +  L L P  P 
Sbjct: 305 EYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPA 364

Query: 306 ALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVL 365
           AL+ LG  Y+       AA Y      +    +A    L +    QG+ ++AI+      
Sbjct: 365 ALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAA 424

Query: 366 RIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAA 425
           ++DP      +    +Y   G+   A+    +    +P  A  H  L + Y   G +  A
Sbjct: 425 QLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKA 484

Query: 426 IKSYKQALLLRPDFPEATCNLL 447
            +++++AL + PDF  A  NL 
Sbjct: 485 REAFEKALSIEPDFFPAAANLA 506

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score =  101 bits (250), Expect = 2e-23
 Identities = 83/264 (31%), Positives = 129/264 (48%), Gaps = 10/264 (3%)

Query: 50  DMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPN--FADAWSNL 107
                  E   +L               +  G++  A+     A+EL PN   A     L
Sbjct: 6   LALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLL 65

Query: 108 ASAYMRKGRLNEAAQCCRQALA--LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ 165
           A A ++ GRL EA +   +AL   L P L +A  NLG L++A G  +EA     +AL + 
Sbjct: 66  ALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALD 125

Query: 166 PTFAIAWSNLA-GLFMESGDLNRALQYYKEAVKLKPT---FPDAYLNLGNVYKALGMPQE 221
           P   +A + LA G   E GD   AL+ Y++A++L P      +A L LG + +ALG  +E
Sbjct: 126 PDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEE 185

Query: 222 AIMCYQRAVQTRPN--AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNA 279
           A+   ++A++  P+  A A  NL   Y + G+ + A+ YY++A+  DP   EA  NL   
Sbjct: 186 ALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALL 245

Query: 280 LKDVGRVDEAIQCYNQCLSLQPSH 303
           L ++GR +EA++   + L L P  
Sbjct: 246 LLELGRYEEALEALEKALELDPDL 269

Length = 291

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 92.8 bits (231), Expect = 1e-22
 Identities = 38/96 (39%), Positives = 54/96 (56%)

Query: 140 NLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK 199
           NLGNL    G   EA   Y +AL + P  A A+ NLA  + + G    AL+ Y++A++L 
Sbjct: 5   NLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD 64

Query: 200 PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
           P    AY NLG  Y  LG  +EA+  Y++A++  PN
Sbjct: 65  PDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 92.8 bits (231), Expect = 1e-22
 Identities = 39/100 (39%), Positives = 56/100 (56%)

Query: 68  ECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQA 127
           E   N+ N + + GD D A+ YY  A+EL P+ ADA+ NLA+AY + G+  EA +   +A
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 128 LALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT 167
           L L+P    A+ NLG      G  +EA   Y +AL + P 
Sbjct: 61  LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score =  102 bits (257), Expect = 3e-22
 Identities = 101/421 (23%), Positives = 152/421 (36%), Gaps = 20/421 (4%)

Query: 33  TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLV 92
            + L+     Y Q + Y   I + + AL+ +P  AE    +   +   GD   A +    
Sbjct: 22  PEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRK 81

Query: 93  AIELRPNFADAWSNLASAYMRKGRLNEA--------AQCCRQALALNPLLVDAHSNLGNL 144
           A+ L          LA AY+ +G+  +               A  L  L   A+  LG L
Sbjct: 82  ALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQL 141

Query: 145 MKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD 204
             AQ         Y +AL I P    A   LA L +     + A     E +   P   D
Sbjct: 142 ELAQ-------KSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVD 194

Query: 205 AYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIA-FGNLASTYYERGQADMAILYYKQAI 263
           A L  G++  +LG  + A+  Y++A+  RPN IA    LA+   E G+ + A  +    +
Sbjct: 195 ALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALL 254

Query: 264 GCDPRFLEAYNNLGNALKDV--GRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLP 321
              P    A  +   AL D      ++A +     L   P +  AL   G    +   L 
Sbjct: 255 KKAPNSPLA--HYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLE 312

Query: 322 AAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNT 381
            A  Y    L            LA I  + G   +AI+  +  L +DP     L   G  
Sbjct: 313 QAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEA 372

Query: 382 YKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE 441
           Y  +G    A +   +A  + P  A A   L  +    G    AI   + A  L P+   
Sbjct: 373 YLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGR 432

Query: 442 A 442
           A
Sbjct: 433 A 433

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 88.6 bits (220), Expect = 4e-21
 Identities = 41/100 (41%), Positives = 65/100 (65%), Gaps = 1/100 (1%)

Query: 204 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQA 262
           +A LNLGN+Y  LG   EA+  Y++A++  P NA A+ NLA+ YY+ G+ + A+  Y++A
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 263 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS 302
           +  DP   +AY NLG A   +G+ +EA++ Y + L L P+
Sbjct: 61  LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 80.5 bits (199), Expect = 2e-18
 Identities = 40/99 (40%), Positives = 60/99 (60%)

Query: 34  DNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVA 93
           + LL LG +YY+L DYD  +   E+AL L+P  A+ Y N+A A+ + G  + A+  Y  A
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 94  IELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNP 132
           +EL P+ A A+ NL  AY + G+  EA +   +AL L+P
Sbjct: 61  LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 80.5 bits (199), Expect = 3e-18
 Identities = 39/98 (39%), Positives = 61/98 (62%), Gaps = 1/98 (1%)

Query: 171 AWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAV 230
           A  NL  L+ + GD + AL+YY++A++L P   DAY NL   Y  LG  +EA+  Y++A+
Sbjct: 2   ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61

Query: 231 QTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDP 267
           +  P NA A+ NL   YY+ G+ + A+  Y++A+  DP
Sbjct: 62  ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 79.7 bits (197), Expect = 5e-18
 Identities = 33/100 (33%), Positives = 52/100 (52%)

Query: 102 DAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEA 161
           +A  NL + Y + G  +EA +   +AL L+P   DA+ NL       G  +EA   Y +A
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 162 LRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPT 201
           L + P  A A+ NL   + + G    AL+ Y++A++L P 
Sbjct: 61  LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 84.9 bits (208), Expect = 7e-18
 Identities = 68/253 (26%), Positives = 108/253 (42%), Gaps = 9/253 (3%)

Query: 15  YKQALEHSNSVYERNPLRTDNLLL--LGAIYYQLHDYDMCIARNEEALR--LEPRFAECY 70
             +ALE      E  P      LL  L     +L   +  +   E+AL   L P  AE  
Sbjct: 39  LAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEAL 98

Query: 71  GNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLA-SAYMRKGRLNEAAQCCRQALA 129
            N+    +  G  + A+     A+ L P+   A + LA  A    G   EA +   +AL 
Sbjct: 99  LNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE 158

Query: 130 LNP---LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP-TFAIAWSNLAGLFMESGDL 185
           L+P    L +A   LG L++A G  +EA     +AL++ P   A A  NL  L+++ G  
Sbjct: 159 LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218

Query: 186 NRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLAST 245
             AL+YY++A++L P   +A  NL  +   LG  +EA+   ++A++  P+    G     
Sbjct: 219 EEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPDLYNLGLALLL 278

Query: 246 YYERGQADMAILY 258
                   +    
Sbjct: 279 LLAEALELLEKAD 291

Length = 291

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 77.8 bits (192), Expect = 2e-17
 Identities = 34/98 (34%), Positives = 58/98 (59%)

Query: 341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAIT 400
             NL  +Y + G+Y +A+  Y + L +DP  AD   N    Y ++G+  +A++DY +A+ 
Sbjct: 3   LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62

Query: 401 IRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 438
           + P  A+A+ NL  AY   G  E A+++Y++AL L P+
Sbjct: 63  LDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 82.4 bits (204), Expect = 2e-17
 Identities = 47/173 (27%), Positives = 83/173 (47%), Gaps = 2/173 (1%)

Query: 67  AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQ 126
           A+    +A  + E+GD+++A      A+E  P+   A+  LA  Y + G L +A    R+
Sbjct: 31  AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRR 90

Query: 127 ALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ--PTFAIAWSNLAGLFMESGD 184
           AL LNP   D  +N G  +  QG  ++A   + +A+     P  A +  N     +++GD
Sbjct: 91  ALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGD 150

Query: 185 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAI 237
            ++A +Y   A+++ P  P++ L L  +Y   G  ++A    +R  QT     
Sbjct: 151 FDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTA 203

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 82.6 bits (202), Expect = 4e-17
 Identities = 71/284 (25%), Positives = 120/284 (42%), Gaps = 42/284 (14%)

Query: 144 LMKAQGLVQEAYSCYLEALRIQP--TFAIAWSNLAGLFMESGDLNRALQYYKEAVK--LK 199
           L++  G + EA     EAL + P    A     LA   ++ G L  AL+  ++A++  L 
Sbjct: 32  LLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELL 91

Query: 200 PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLA--STYYERGQADMAIL 257
           P   +A LNLG + +ALG  +EA+   ++A+   P+      L      YE G  + A+ 
Sbjct: 92  PNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALE 151

Query: 258 YYKQAIGCDP---RFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIY 314
            Y++A+  DP      EA   LG  L+ +GR +EA++   + L L P             
Sbjct: 152 LYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD----------- 200

Query: 315 MEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADG 374
                                  +    NL ++Y + G Y +A+  Y + L +DP  A+ 
Sbjct: 201 ----------------------DAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEA 238

Query: 375 LVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKD 418
           L N      E+GR  +A++   +A+ + P +      L     +
Sbjct: 239 LYNLALLLLELGRYEEALEALEKALELDPDLYNLGLALLLLLAE 282

Length = 291

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 75.9 bits (187), Expect = 1e-16
 Identities = 31/99 (31%), Positives = 47/99 (47%)

Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 330
           EA  NLGN    +G  DEA++ Y + L L P +  A  NL   Y +      A   Y+  
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 331 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP 369
           L +    +  + NL + Y + G Y +A+  Y + L +DP
Sbjct: 61  LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99

Length = 100

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 80.7 bits (197), Expect = 2e-16
 Identities = 72/266 (27%), Positives = 122/266 (45%), Gaps = 11/266 (4%)

Query: 184 DLNRALQYYKEAVKLKPTFPDAYLNLGN-VYKALGMPQEAIMCYQRAVQTRPN---AIAF 239
           DL  AL    EA+        A L  G  + + LG   EA+   + A++  PN   A   
Sbjct: 3   DLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLL 62

Query: 240 GNLASTYYERGQADMAILYYKQAIG--CDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCL 297
             LA    + G+ + A+   ++A+     P   EA  NLG  L+ +G+ +EA++   + L
Sbjct: 63  LLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKAL 122

Query: 298 SLQPSHPQALTNLG-NIYMEWNMLPAAASYYKATLAVTTGLSAPFN---NLAVIYKQQGN 353
           +L P    A   L      E      A   Y+  L +   L+        L  + +  G 
Sbjct: 123 ALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGR 182

Query: 354 YADAISCYNEVLRIDP-LAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANL 412
           Y +A+    + L+++P   A+ L+N G  Y ++G+  +A++ Y +A+ + P  AEA  NL
Sbjct: 183 YEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNL 242

Query: 413 ASAYKDSGHVEAAIKSYKQALLLRPD 438
           A    + G  E A+++ ++AL L PD
Sbjct: 243 ALLLLELGRYEEALEALEKALELDPD 268

Length = 291

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 72.0 bits (177), Expect = 3e-15
 Identities = 32/93 (34%), Positives = 50/93 (53%)

Query: 241 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300
           NL + YY+ G  D A+ YY++A+  DP   +AY NL  A   +G+ +EA++ Y + L L 
Sbjct: 5   NLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD 64

Query: 301 PSHPQALTNLGNIYMEWNMLPAAASYYKATLAV 333
           P + +A  NLG  Y +      A   Y+  L +
Sbjct: 65  PDNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 67.8 bits (166), Expect = 8e-14
 Identities = 34/95 (35%), Positives = 50/95 (52%)

Query: 5   LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64
           L +  YK G Y +ALE+     E +P   D    L A YY+L  Y+  +   E+AL L+P
Sbjct: 6   LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP 65

Query: 65  RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPN 99
             A+ Y N+  A+ + G  + A+  Y  A+EL PN
Sbjct: 66  DNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 71.0 bits (172), Expect = 3e-13
 Identities = 58/215 (26%), Positives = 95/215 (44%), Gaps = 9/215 (4%)

Query: 246 YYERGQADMAILYYKQAIGCDPR--FLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ--P 301
               G+   A+   ++A+   P          L  AL  +GR++EA++   + L L+  P
Sbjct: 33  LELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLP 92

Query: 302 SHPQALTNLGNIYMEWNMLPAAASYYKATLAVT-TGLSAPFNNLAVIYKQQGNYADAISC 360
           +  +AL NLG +         A    +  LA+      A          + G+Y +A+  
Sbjct: 93  NLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALEL 152

Query: 361 YNEVLRIDP---LAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRP-TMAEAHANLASAY 416
           Y + L +DP     A+ L+  G   + +GR  +A++   +A+ + P   AEA  NL   Y
Sbjct: 153 YEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLY 212

Query: 417 KDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 451
              G  E A++ Y++AL L PD  EA  NL   L 
Sbjct: 213 LKLGKYEEALEYYEKALELDPDNAEALYNLALLLL 247

Length = 291

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 70.1 bits (172), Expect = 3e-13
 Identities = 46/204 (22%), Positives = 74/204 (36%), Gaps = 35/204 (17%)

Query: 174 NLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR 233
            LA  ++E GDL  A +   +A++  P    AYL L   Y+ LG  ++A   ++RA+   
Sbjct: 36  QLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN 95

Query: 234 PNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 293
           PN                 D                    NN G  L   G+ ++A+Q +
Sbjct: 96  PN---------------NGD------------------VLNNYGTFLCQQGKYEQAMQQF 122

Query: 294 NQCLSLQ--PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQ 351
            Q +     P   ++L N G   ++      A  Y    L +          LA +Y  +
Sbjct: 123 EQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLR 182

Query: 352 GNYADAISCYNEVLRIDPLAADGL 375
           G Y DA +      +     A+ L
Sbjct: 183 GQYKDARAYLERYQQTYNQTAESL 206

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 70.6 bits (171), Expect = 4e-13
 Identities = 51/194 (26%), Positives = 84/194 (43%), Gaps = 6/194 (3%)

Query: 2   HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLG-AIYYQLHDYDMCIARNEEAL 60
            + L   +   G Y++ALE        +P       LL     Y+L DY+  +   E+AL
Sbjct: 98  LLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKAL 157

Query: 61  RLEP---RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPN-FADAWSNLASAYMRKGR 116
            L+P     AE    +    +  G  + A+     A++L P+  A+A  NL   Y++ G+
Sbjct: 158 ELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217

Query: 117 LNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT-FAIAWSNL 175
             EA +   +AL L+P   +A  NL  L+   G  +EA     +AL + P  + +  + L
Sbjct: 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPDLYNLGLALL 277

Query: 176 AGLFMESGDLNRAL 189
             L      L +A 
Sbjct: 278 LLLAEALELLEKAD 291

Length = 291

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 64.3 bits (157), Expect = 6e-13
 Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 1/67 (1%)

Query: 67  AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKG-RLNEAAQCCR 125
           AE   N+ NA  + GD D AI  Y  A+EL P+ A+A+ NLA AY++ G    EA +   
Sbjct: 3   AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLE 62

Query: 126 QALALNP 132
           +AL L+P
Sbjct: 63  KALELDP 69

Length = 69

>gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 66.3 bits (162), Expect = 6e-12
 Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 4/122 (3%)

Query: 93  AIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQ 152
           A+E  P++  A    A  Y + G  + A +  R+AL+L P   D  +N G  + AQG  +
Sbjct: 61  ALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPE 120

Query: 153 EAYSCYLEALRIQPTF---AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNL 209
           EA   +  AL   P +   +    NL    +++G  ++A +Y K A++L P FP A L L
Sbjct: 121 EAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLEL 179

Query: 210 GN 211
             
Sbjct: 180 AR 181

Length = 250

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 61.2 bits (149), Expect = 1e-11
 Identities = 29/77 (37%), Positives = 46/77 (59%)

Query: 375 LVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALL 434
           L+N GN Y ++G   +A++ Y +A+ + P  A+A+ NLA+AY   G  E A++ Y++AL 
Sbjct: 3   LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62

Query: 435 LRPDFPEATCNLLHTLQ 451
           L PD  +A  NL     
Sbjct: 63  LDPDNAKAYYNLGLAYY 79

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 60.8 bits (148), Expect = 1e-11
 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 1/67 (1%)

Query: 169 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG-MPQEAIMCYQ 227
           A A  NL     + GD + A++ Y++A++L P   +AY NL   Y  LG   +EA+   +
Sbjct: 3   AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLE 62

Query: 228 RAVQTRP 234
           +A++  P
Sbjct: 63  KALELDP 69

Length = 69

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 67.3 bits (164), Expect = 2e-11
 Identities = 64/293 (21%), Positives = 123/293 (41%), Gaps = 31/293 (10%)

Query: 119 EAAQCCRQALALNPL---LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNL 175
           EAA+   +AL L  L      A +  G     +G   EA +   +++ + P    ++   
Sbjct: 312 EAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKR 371

Query: 176 AGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
           A + +E GD ++A + + +A+KL    PD Y +   ++   G   +A   YQ+++   P+
Sbjct: 372 ASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD 431

Query: 236 AI-AFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 294
            I +   L  T Y+ G    ++  +++     P   + YN  G  L D  + DEAI+ ++
Sbjct: 432 FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFD 491

Query: 295 QCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNY 354
             + L+            +YM  N+LP      KA                 +++ + ++
Sbjct: 492 TAIELE-------KETKPMYM--NVLPLIN---KALA---------------LFQWKQDF 524

Query: 355 ADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAE 407
            +A +   + L IDP     +        + G V +A++ + RA  +  T  E
Sbjct: 525 IEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 36/174 (20%), Positives = 65/174 (37%), Gaps = 8/174 (4%)

Query: 135 VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKE 194
                 L      QG ++ A     +AL   P   +A+  LA  + + G+L +A   ++ 
Sbjct: 31  AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRR 90

Query: 195 AVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN----AIAFGNLASTYYERG 250
           A+ L P   D   N G      G  ++A+  +++A++  P     A +  N      + G
Sbjct: 91  ALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIED-PLYPQPARSLENAGLCALKAG 149

Query: 251 QADMAILYYKQAIGCDPRFLEAYNNL---GNALKDVGRVDEAIQCYNQCLSLQP 301
             D A  Y  +A+  DP+  E+   L                ++ Y Q  +   
Sbjct: 150 DFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTA 203

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

 Score = 64.7 bits (158), Expect = 1e-10
 Identities = 44/189 (23%), Positives = 69/189 (36%), Gaps = 21/189 (11%)

Query: 255 AILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIY 314
           A L  K++       L A           G+ DEA++     ++ QP +P  L   G+I 
Sbjct: 294 ADLLAKRS---KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDIL 350

Query: 315 MEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADG 374
           +E N    A    K  LA+         NLA    + G   +AI   N  L  DP   +G
Sbjct: 351 LEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNG 410

Query: 375 LVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQAL- 433
                  +  + +    + +           AEA    A  Y  +G +E AI    +A  
Sbjct: 411 -------WDLLAQAYAELGN----------RAEALLARAEGYALAGRLEQAIIFLMRASQ 453

Query: 434 LLRPDFPEA 442
            ++  FP+ 
Sbjct: 454 QVKLGFPDW 462

Length = 484

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 56.6 bits (137), Expect = 3e-10
 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 235 NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVG-RVDEAIQCY 293
           NA A  NL +  ++ G  D AI  Y++A+  DP   EAY NL  A   +G   +EA++  
Sbjct: 2   NAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDL 61

Query: 294 NQCLSLQP 301
            + L L P
Sbjct: 62  EKALELDP 69

Length = 69

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 54.2 bits (131), Expect = 2e-09
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIG-RVTDAIQDYIRAI 399
             NL     + G+Y +AI  Y + L +DP  A+   N    Y ++G    +A++D  +A+
Sbjct: 6   LKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKAL 65

Query: 400 TIRP 403
            + P
Sbjct: 66  ELDP 69

Length = 69

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 34/155 (21%), Positives = 62/155 (40%), Gaps = 6/155 (3%)

Query: 241 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300
            LA  Y E+G  ++A     +A+  DP    AY  L    + +G +++A   + + L+L 
Sbjct: 36  QLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN 95

Query: 301 PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGL----SAPFNNLAVIYKQQGNYAD 356
           P++   L N G    +        +  +   A+   L    +    N  +   + G++  
Sbjct: 96  PNNGDVLNNYGTFLCQ--QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDK 153

Query: 357 AISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDA 391
           A       L+IDP   + L+     Y   G+  DA
Sbjct: 154 AEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 53.9 bits (130), Expect = 3e-09
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 101 ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQG-LVQEAYSCYL 159
           A+A  NL +A  + G  +EA +   +AL L+P   +A+ NL       G   +EA     
Sbjct: 3   AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLE 62

Query: 160 EALRIQP 166
           +AL + P
Sbjct: 63  KALELDP 69

Length = 69

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 52.3 bits (126), Expect = 9e-09
 Identities = 22/54 (40%), Positives = 29/54 (53%)

Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAA 324
           EA  NLGNAL  +G  DEAI+ Y + L L P + +A  NL   Y++       A
Sbjct: 4   EALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEA 57

Length = 69

>gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 5/134 (3%)

Query: 160 EALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMP 219
           +AL   P++ +A    A  + + G+ + A + Y++A+ L P   D   N G    A G P
Sbjct: 60  KALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRP 119

Query: 220 QEAIMCYQRAVQTRPN----AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNN 275
           +EA+  ++RA+   P     +    NL     + GQ D A  Y K+A+  DP+F  A   
Sbjct: 120 EEAMQQFERALAD-PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLE 178

Query: 276 LGNALKDVGRVDEA 289
           L       G    A
Sbjct: 179 LARLHYKAGDYAPA 192

Length = 250

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 136 DAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESG-DLNRALQYYKE 194
           +A  NLGN +   G   EA   Y +AL + P  A A+ NLA  +++ G D   AL+  ++
Sbjct: 4   EALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEK 63

Query: 195 AVKLKP 200
           A++L P
Sbjct: 64  ALELDP 69

Length = 69

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 1/67 (1%)

Query: 372 ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG-HVEAAIKSYK 430
           A+ L N GN   ++G   +AI+ Y +A+ + P  AEA+ NLA AY   G   E A++  +
Sbjct: 3   AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLE 62

Query: 431 QALLLRP 437
           +AL L P
Sbjct: 63  KALELDP 69

Length = 69

>gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 47/157 (29%), Positives = 66/157 (42%), Gaps = 2/157 (1%)

Query: 39  LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP 98
           L   Y Q  DY       E+AL  +P +   +   A+ +++ G+ DLA   Y  A+ L P
Sbjct: 41  LALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP 100

Query: 99  NFADAWSNLASAYMRKGRLNEAAQCCRQALALN--PLLVDAHSNLGNLMKAQGLVQEAYS 156
           N  D  +N  +    +GR  EA Q   +ALA        D   NLG      G   +A  
Sbjct: 101 NNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEE 160

Query: 157 CYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYK 193
               AL + P F  A   LA L  ++GD   A  Y +
Sbjct: 161 YLKRALELDPQFPPALLELARLHYKAGDYAPARLYLE 197

Length = 250

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 7/77 (9%)

Query: 166 PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD-------AYLNLGNVYKALGM 218
           P  A A +NLA +    GD + AL+  ++A++L     +       A  NL  +Y ALG 
Sbjct: 2   PDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGD 61

Query: 219 PQEAIMCYQRAVQTRPN 235
             EA+   ++A+  R  
Sbjct: 62  YDEALEYLEKALALREA 78

Length = 78

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 7/77 (9%)

Query: 97  RPNFADAWSNLASAYMRKGRLNEAAQCCRQALAL-------NPLLVDAHSNLGNLMKAQG 149
            P+ A A +NLA    R G  +EA +   +AL L       +P    A +NL  L  A G
Sbjct: 1   HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALG 60

Query: 150 LVQEAYSCYLEALRIQP 166
              EA     +AL ++ 
Sbjct: 61  DYDEALEYLEKALALRE 77

Length = 78

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 56.2 bits (135), Expect = 6e-08
 Identities = 46/213 (21%), Positives = 97/213 (45%), Gaps = 8/213 (3%)

Query: 58  EALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRL 117
           +++ L+PR  + Y   A+   E GD D A   +  A++L     D + + A  +  KG  
Sbjct: 356 KSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEF 415

Query: 118 NEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAG 177
            +A +  ++++ L+P  + +H  LG     +G +  + + +    +  P     ++    
Sbjct: 416 AQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGE 475

Query: 178 LFMESGDLNRALQYYKEAVKLKPTFPDAYLN-LGNVYKALGMPQ------EAIMCYQRAV 230
           L ++    + A++ +  A++L+      Y+N L  + KAL + Q      EA    ++A+
Sbjct: 476 LLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKAL 535

Query: 231 QTRPNA-IAFGNLASTYYERGQADMAILYYKQA 262
              P   IA   +A    ++G  D A+  +++A
Sbjct: 536 IIDPECDIAVATMAQLLLQQGDVDEALKLFERA 568

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 3/163 (1%)

Query: 101 ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLE 160
           A A   LA  Y+++G   +A +   +AL  +P    AH    +  +  G    A   Y +
Sbjct: 35  AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRK 94

Query: 161 ALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK--PTFPDAYLNLGNVYKALGM 218
           AL + P      +N        G    A+Q ++ A+         D   NLG      G 
Sbjct: 95  ALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQ 154

Query: 219 PQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYK 260
             +A    +RA++  P    A   LA  +Y+ G    A LY +
Sbjct: 155 FDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLE 197

Length = 250

>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

 Score = 54.7 bits (132), Expect = 1e-07
 Identities = 34/134 (25%), Positives = 49/134 (36%), Gaps = 1/134 (0%)

Query: 153 EAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNV 212
           EA       +  QP           + +E+     A++  K+A+ L P  P   LNL   
Sbjct: 324 EALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQA 383

Query: 213 YKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLE 271
               G PQEAI    R +   P +   +  LA  Y E G    A+L   +      R  +
Sbjct: 384 LLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQ 443

Query: 272 AYNNLGNALKDVGR 285
           A   L  A + V  
Sbjct: 444 AIIFLMRASQQVKL 457

Length = 484

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 7/70 (10%)

Query: 341 FNNLAVIYKQQGNYADAISCYNEVLRI-------DPLAADGLVNRGNTYKEIGRVTDAIQ 393
            NNLA++ ++ G+Y +A+    + L +        P  A  L N    Y  +G   +A++
Sbjct: 8   LNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEALE 67

Query: 394 DYIRAITIRP 403
              +A+ +R 
Sbjct: 68  YLEKALALRE 77

Length = 78

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 203 PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERG-QADMAILYYK 260
            +A  NLGN    LG   EAI  Y++A++  P NA A+ NLA  Y + G   + A+   +
Sbjct: 3   AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLE 62

Query: 261 QAIGCDP 267
           +A+  DP
Sbjct: 63  KALELDP 69

Length = 69

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 21/103 (20%), Positives = 36/103 (34%), Gaps = 26/103 (25%)

Query: 200 PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYY 259
           P    A  NL  V + LG   EA+   ++A++                            
Sbjct: 2   PDLAAALNNLALVLRRLGDYDEALELLEKALE--------------------------LA 35

Query: 260 KQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS 302
           ++     P    A NNL      +G  DEA++   + L+L+ +
Sbjct: 36  RELGEDHPETARALNNLARLYLALGDYDEALEYLEKALALREA 78

Length = 78

>gnl|CDD|183140 PRK11447, PRK11447, cellulose synthase subunit BcsC; Provisional

 Score = 53.9 bits (130), Expect = 3e-07
 Identities = 83/399 (20%), Positives = 147/399 (36%), Gaps = 67/399 (16%)

Query: 93  AIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQ 152
           A+   P  ++A   L  AY ++G    A     +ALAL     D HS+  N  K + L++
Sbjct: 295 AVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALAL-----DPHSS--NRDKWESLLK 347

Query: 153 ---------------------EAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQY 191
                                +A   Y +A ++  T + A   L  + M   D   A +Y
Sbjct: 348 VNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERY 407

Query: 192 YKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCY--------QRAVQTRPNAIAFGNL- 242
           Y++A+++ P   +A   L N+Y+    P++A + +        +R++     ++    L 
Sbjct: 408 YQQALRMDPGNTNAVRGLANLYRQQS-PEKA-LAFIASLSASQRRSIDDIERSLQNDRLA 465

Query: 243 --ASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300
             A     +G+   A    +Q +  DP  +     L   L+  G+  +A     +    +
Sbjct: 466 QQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK 525

Query: 301 PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT------TGLSAPFNNLAVI-----YK 349
           P+ P+ +   G +Y+  +    AA  +  TL           L+    +  V+      +
Sbjct: 526 PNDPEQVYAYG-LYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLR 584

Query: 350 QQGNYADAISCYNE---VLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMA 406
             G  A+A +   +     RID   AD    RG+          A   Y R +T  P  A
Sbjct: 585 DSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDY-------AAARAAYQRVLTREPGNA 637

Query: 407 EAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCN 445
           +A   L       G + AA    +  L   P     + N
Sbjct: 638 DARLGLIEVDIAQGDLAAA----RAQLAKLPATANDSLN 672

Length = 1157

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 47.7 bits (114), Expect = 4e-07
 Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 7/76 (9%)

Query: 64  PRFAECYGNMANAWKEKGDIDLAIRYYLVAIELR-------PNFADAWSNLASAYMRKGR 116
           P  A    N+A   +  GD D A+     A+EL        P  A A +NLA  Y+  G 
Sbjct: 2   PDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGD 61

Query: 117 LNEAAQCCRQALALNP 132
            +EA +   +ALAL  
Sbjct: 62  YDEALEYLEKALALRE 77

Length = 78

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 47.7 bits (114), Expect = 4e-07
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 7/75 (9%)

Query: 266 DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ----PSHPQ---ALTNLGNIYMEWN 318
            P    A NNL   L+ +G  DEA++   + L L       HP+   AL NL  +Y+   
Sbjct: 1   HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALG 60

Query: 319 MLPAAASYYKATLAV 333
               A  Y +  LA+
Sbjct: 61  DYDEALEYLEKALAL 75

Length = 78

>gnl|CDD|183140 PRK11447, PRK11447, cellulose synthase subunit BcsC; Provisional

 Score = 53.5 bits (129), Expect = 4e-07
 Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 17/151 (11%)

Query: 217 GMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDP-------- 267
           G   +AI   Q+AV+  P  + A G L   Y ++G    A+  +++A+  DP        
Sbjct: 283 GQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKW 342

Query: 268 -------RFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNML 320
                  R+         ALK    + +A + Y Q   +  +   A+  LG++ M     
Sbjct: 343 ESLLKVNRYWLLIQQGDAALK-ANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDY 401

Query: 321 PAAASYYKATLAVTTGLSAPFNNLAVIYKQQ 351
            AA  YY+  L +  G +     LA +Y+QQ
Sbjct: 402 AAAERYYQQALRMDPGNTNAVRGLANLYRQQ 432

Length = 1157

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 46.9 bits (112), Expect = 9e-07
 Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 34 DNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG-DIDLAIRYYLV 92
          + L  LG   ++L DYD  I   E+AL L+P  AE Y N+A A+ + G D + A+     
Sbjct: 4  EALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEK 63

Query: 93 AIELRP 98
          A+EL P
Sbjct: 64 ALELDP 69

Length = 69

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 44.7 bits (107), Expect = 2e-06
 Identities = 14/32 (43%), Positives = 21/32 (65%)

Query: 101 ADAWSNLASAYMRKGRLNEAAQCCRQALALNP 132
           A A  NL +AY++ G+ +EA +   +AL LNP
Sbjct: 1   AKALYNLGNAYLKLGKYDEALEYYEKALELNP 32

Length = 34

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 7/78 (8%)

Query: 29 NPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLE-------PRFAECYGNMANAWKEKG 81
          +P     L  L  +  +L DYD  +   E+AL L        P  A    N+A  +   G
Sbjct: 1  HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALG 60

Query: 82 DIDLAIRYYLVAIELRPN 99
          D D A+ Y   A+ LR  
Sbjct: 61 DYDEALEYLEKALALREA 78

Length = 78

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 43.9 bits (105), Expect = 3e-06
 Identities = 14/33 (42%), Positives = 22/33 (66%)

Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 303
           +A  NLGNA   +G+ DEA++ Y + L L P++
Sbjct: 2   KALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 7/73 (9%)

Query: 368 DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR-------PTMAEAHANLASAYKDSG 420
            P  A  L N     + +G   +A++   +A+ +        P  A A  NLA  Y   G
Sbjct: 1   HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALG 60

Query: 421 HVEAAIKSYKQAL 433
             + A++  ++AL
Sbjct: 61  DYDEALEYLEKAL 73

Length = 78

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 50.1 bits (120), Expect = 6e-06
 Identities = 47/216 (21%), Positives = 75/216 (34%), Gaps = 15/216 (6%)

Query: 243 ASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS 302
           A +Y ++ +   AI+  K A+  DP   EA   LG     +G    A +   + LSL   
Sbjct: 29  AKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYP 88

Query: 303 HPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSA-PFNNLAVI-------YKQQGNY 354
             Q L  L   Y+           ++  L    G +       A +       Y   G  
Sbjct: 89  KNQVLPLLARAYL-------LQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQL 141

Query: 355 ADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLAS 414
             A   Y + L IDP +    +          R  +A       +T  P   +A      
Sbjct: 142 ELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGD 201

Query: 415 AYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTL 450
                G++E A+ +Y++A+ LRP+       L   L
Sbjct: 202 LLLSLGNIELALAAYRKAIALRPNNIAVLLALATIL 237

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 43.2 bits (103), Expect = 6e-06
 Identities = 13/32 (40%), Positives = 21/32 (65%)

Query: 101 ADAWSNLASAYMRKGRLNEAAQCCRQALALNP 132
           A+A  NL +AY++ G  +EA +   +AL L+P
Sbjct: 1   AEALYNLGNAYLKLGDYDEALEYYEKALELDP 32

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 43.2 bits (103), Expect = 7e-06
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 203 PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
             A  NLGN Y  LG   EA+  Y++A++  PN
Sbjct: 1   AKALYNLGNAYLKLGKYDEALEYYEKALELNPN 33

Length = 34

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 42.8 bits (102), Expect = 7e-06
 Identities = 15/33 (45%), Positives = 21/33 (63%)

Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 303
           EA  NLGNA   +G  DEA++ Y + L L P++
Sbjct: 2   EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

 Score = 48.6 bits (116), Expect = 1e-05
 Identities = 33/150 (22%), Positives = 59/150 (39%), Gaps = 1/150 (0%)

Query: 159 LEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGM 218
           L A R +     A    A     +G  + AL+  +  +  +P  P      G++      
Sbjct: 296 LLAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANK 355

Query: 219 PQEAIMCYQRAVQTRPNAIAFG-NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLG 277
            +EAI   ++A+   PN+     NLA    + G+   AI    + +  DP     ++ L 
Sbjct: 356 AKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLA 415

Query: 278 NALKDVGRVDEAIQCYNQCLSLQPSHPQAL 307
            A  ++G   EA+    +  +L     QA+
Sbjct: 416 QAYAELGNRAEALLARAEGYALAGRLEQAI 445

Length = 484

>gnl|CDD|234406 TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA

 Score = 48.5 bits (116), Expect = 1e-05
 Identities = 30/125 (24%), Positives = 47/125 (37%), Gaps = 1/125 (0%)

Query: 111 YMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAI 170
               GR  EA   C +  +   L       L    + +    +A   Y + L+  P    
Sbjct: 63  LSWAGRDKEAIDVCERY-SPVGLPARVLEALAKAYRNEKQWDKALELYRKLLQRDPNNPD 121

Query: 171 AWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAV 230
               LA    ++G    AL+Y KE V   PT    Y  L  V +A     +A+  +Q+A+
Sbjct: 122 GLLGLALTLADAGKDAEALKYLKEYVARFPTDAARYEALAYVLRAAEDHLDALQAWQQAL 181

Query: 231 QTRPN 235
              P+
Sbjct: 182 TLEPD 186

Members of this protein family are the poly-beta-1,6 N-acetyl-D-glucosamine (PGA) export porin PgaA of Gram-negative bacteria. There is no counterpart in the poly-beta-1,6 N-acetyl-D-glucosamine biosynthesis systems of Gram-positive bacteria such as Staphylococcus epidermidis. The PGA polysaccharide adhesin is a critical determinant of biofilm formation. The conserved C-terminal domain of this outer membrane protein is preceded by a variable number of TPR repeats. Length = 800

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 42.0 bits (100), Expect = 2e-05
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 341 FNNLAVIYKQQGNYADAISCYNEVLRIDP 369
             NL   Y + G Y +A+  Y + L ++P
Sbjct: 4   LYNLGNAYLKLGKYDEALEYYEKALELNP 32

Length = 34

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 42.0 bits (100), Expect = 2e-05
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 341 FNNLAVIYKQQGNYADAISCYNEVLRIDP 369
             NL   Y + G+Y +A+  Y + L +DP
Sbjct: 4   LYNLGNAYLKLGDYDEALEYYEKALELDP 32

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 34/148 (22%), Positives = 58/148 (39%)

Query: 91  LVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGL 150
           L A  LR     + + LA+A   +G  + +    +++    P   +  +  G      G 
Sbjct: 56  LGAAVLRNPEDLSIAKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGN 115

Query: 151 VQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLG 210
             EA S   +A R+ PT   AW+ L     + G  + A + Y++A++L P  P    NLG
Sbjct: 116 FGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLG 175

Query: 211 NVYKALGMPQEAIMCYQRAVQTRPNAIA 238
                 G  ++A      A  +      
Sbjct: 176 MSLLLRGDLEDAETLLLPAYLSPAADSR 203

Length = 257

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 22/52 (42%), Positives = 28/52 (53%)

Query: 81  GDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNP 132
           GD D A+     A+   P  A+A   L  A +R+GRL EAA   R ALA +P
Sbjct: 11  GDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62

Length = 65

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 17/63 (26%), Positives = 27/63 (42%)

Query: 344 LAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRP 403
           LA    + G+Y +A++     L   PLAA+ L+  G      GR+ +A      A+   P
Sbjct: 3   LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62

Query: 404 TMA 406
              
Sbjct: 63  DDP 65

Length = 65

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 41.3 bits (98), Expect = 3e-05
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 203 PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
            +A  NLGN Y  LG   EA+  Y++A++  PN
Sbjct: 1   AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

 Score = 46.3 bits (110), Expect = 3e-05
 Identities = 34/109 (31%), Positives = 48/109 (44%)

Query: 249 RGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALT 308
            G    A+   ++A    P   EA+N LG AL  +GR DEA + Y Q L L P+ P    
Sbjct: 113 NGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIAN 172

Query: 309 NLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADA 357
           NLG   +    L  A +            S    NLA++   QG++ +A
Sbjct: 173 NLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREA 221

Length = 257

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 17/62 (27%), Positives = 26/62 (41%)

Query: 175 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP 234
           LA   + +GD + AL   + A+   P   +A L LG      G   EA    + A+   P
Sbjct: 3   LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62

Query: 235 NA 236
           + 
Sbjct: 63  DD 64

Length = 65

>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat

 Score = 41.3 bits (98), Expect = 3e-05
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 101 ADAWSNLASAYMRKGRLNEAAQCCRQALALNP 132
           A+A  NL  AY + G   EA +   +AL L+P
Sbjct: 1   AEALYNLGLAYYKLGDYEEALEAYEKALELDP 32

This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34

>gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 7/83 (8%)

Query: 81  GDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSN 140
           G+   A+     A  L P   +AW+ L +A  + GR +EA +  RQAL L P      +N
Sbjct: 114 GNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANN 173

Query: 141 L-------GNLMKAQGLVQEAYS 156
           L       G+L  A+ L+  AY 
Sbjct: 174 LGMSLLLRGDLEDAETLLLPAYL 196

Length = 257

>gnl|CDD|225504 COG2956, COG2956, Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

 Score = 46.6 bits (111), Expect = 4e-05
 Identities = 54/257 (21%), Positives = 106/257 (41%), Gaps = 14/257 (5%)

Query: 58  EALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFAD-----AWSNLASAYM 112
           E L+ +P   E +  + N ++ +G++D AIR +   +   P+        A   L   YM
Sbjct: 60  EMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQ-TLLESPDLTFEQRLLALQQLGRDYM 118

Query: 113 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP---TFA 169
             G L+ A     Q +        A   L N+ +A    ++A       +++        
Sbjct: 119 AAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE 178

Query: 170 IA--WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQ 227
           IA  +  LA   + S D++RA +  K+A++       A + LG V  A G  Q+A+   +
Sbjct: 179 IAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALE 238

Query: 228 RAVQTRPNAI--AFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGR 285
           R ++  P  +      L   Y + G+    + + ++A+  +    +A   L + ++    
Sbjct: 239 RVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG-ADAELMLADLIELQEG 297

Query: 286 VDEAIQCYNQCLSLQPS 302
           +D A     + L  +P+
Sbjct: 298 IDAAQAYLTRQLRRKPT 314

Length = 389

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 22/60 (36%), Positives = 28/60 (46%)

Query: 107 LASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP 166
           LA A +R G  +EA      ALA  PL  +A   LG  +  QG + EA +    AL   P
Sbjct: 3   LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62

Length = 65

>gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat

 Score = 40.6 bits (96), Expect = 6e-05
 Identities = 15/34 (44%), Positives = 22/34 (64%)

Query: 258 YYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQ 291
            Y++A+  DP   EAY NL   L ++G+ DEA+Q
Sbjct: 1   LYEKALELDPNNAEAYYNLALLLLNLGQYDEALQ 34

Length = 34

>gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat

 Score = 39.9 bits (94), Expect = 8e-05
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 191 YYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAI 223
            Y++A++L P   +AY NL  +   LG   EA+
Sbjct: 1   LYEKALELDPNNAEAYYNLALLLLNLGQYDEAL 33

Length = 34

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 41.1 bits (97), Expect = 9e-05
 Identities = 16/63 (25%), Positives = 20/63 (31%)

Query: 141 LGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKP 200
           L       G   EA +    AL   P  A A   L    +  G L  A    + A+   P
Sbjct: 3   LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62

Query: 201 TFP 203
             P
Sbjct: 63  DDP 65

Length = 65

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 22/63 (34%), Positives = 31/63 (49%)

Query: 2  HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
          +  LA   YK G Y++ALE      E +P        LG  YY+L  Y+  +   E+AL 
Sbjct: 37 YYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALE 96

Query: 62 LEP 64
          L+P
Sbjct: 97 LDP 99

Length = 100

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 35/147 (23%), Positives = 55/147 (37%), Gaps = 2/147 (1%)

Query: 305 QALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEV 364
           +    L   Y+E   L  A       L         +  LA+ Y+Q G    A   +   
Sbjct: 32  KIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRA 91

Query: 365 LRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAIT--IRPTMAEAHANLASAYKDSGHV 422
           L ++P   D L N G    + G+   A+Q + +AI   + P  A +  N       +G  
Sbjct: 92  LTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDF 151

Query: 423 EAAIKSYKQALLLRPDFPEATCNLLHT 449
           + A K   +AL + P  PE+   L   
Sbjct: 152 DKAEKYLTRALQIDPQRPESLLELAEL 178

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|198111 smart01043, BTAD, Bacterial transcriptional activator domain

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 20/76 (26%), Positives = 26/76 (34%), Gaps = 3/76 (3%)

Query: 57  EEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGR 116
            E  RL     E    +A A    G  + A+      + L P        L  A  R GR
Sbjct: 51  AERERLRELRLEALEALAEALLALGRHEEALALLERLLALDPLRERLHRLLMRALYRAGR 110

Query: 117 LNEAA---QCCRQALA 129
             EA    +  R+ LA
Sbjct: 111 RAEALRAYRRLRRLLA 126

Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats. Length = 145

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 44.8 bits (106), Expect = 1e-04
 Identities = 16/57 (28%), Positives = 34/57 (59%)

Query: 353 NYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAH 409
           ++A A+  Y + + +DP  A+   +R     ++G  T+A+ D  +AI + P++A+A+
Sbjct: 17  DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAY 73

Length = 356

>gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat

 Score = 38.6 bits (91), Expect = 2e-04
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 270 LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 303
             AY  LG     +G  +EA + Y + L L P++
Sbjct: 1   ARAYYLLGQIYLQLGDYEEAKEYYEKALELDPNN 34

Length = 34

>gnl|CDD|236983 PRK11788, PRK11788, tetratricopeptide repeat protein; Provisional

 Score = 44.0 bits (105), Expect = 2e-04
 Identities = 30/158 (18%), Positives = 56/158 (35%), Gaps = 35/158 (22%)

Query: 107 LASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP 166
           LA   + +G L+ A    ++ALA +P  V A     +++                     
Sbjct: 186 LAQQALARGDLDAARALLKKALAADPQCVRA-----SILLGD------------------ 222

Query: 167 TFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF-PDAYLNLGNVYKALGMPQEAIMC 225
                      L +  GD   A++  +   +  P +  +    L   Y+ALG   E +  
Sbjct: 223 -----------LALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEF 271

Query: 226 YQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAI 263
            +RA++  P A     LA    E+   + A    ++ +
Sbjct: 272 LRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQL 309

Length = 389

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 38.6 bits (91), Expect = 3e-04
 Identities = 12/34 (35%), Positives = 21/34 (61%)

Query: 169 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF 202
           A A  NL   +++ G  + AL+YY++A++L P  
Sbjct: 1   AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 20/63 (31%), Positives = 25/63 (39%)

Query: 242 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP 301
           LA      G  D A+   + A+   P   EA   LG AL   GR+ EA       L+  P
Sbjct: 3   LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62

Query: 302 SHP 304
             P
Sbjct: 63  DDP 65

Length = 65

>gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat

 Score = 38.7 bits (91), Expect = 3e-04
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 89  YYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQ 122
            Y  A+EL PN A+A+ NLA   +  G+ +EA Q
Sbjct: 1   LYEKALELDPNNAEAYYNLALLLLNLGQYDEALQ 34

Length = 34

>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

 Score = 43.5 bits (103), Expect = 4e-04
 Identities = 36/156 (23%), Positives = 59/156 (37%), Gaps = 3/156 (1%)

Query: 103 AWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEAL 162
           A    A      G+ +EA +  +  +A  P         G+++      +EA     +AL
Sbjct: 308 AQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKAL 367

Query: 163 RIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEA 222
            + P   +   NLA   ++ G    A++     +   P  P+ +  L   Y  LG   EA
Sbjct: 368 ALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEA 427

Query: 223 IMCY--QRAVQTRPN-AIAFGNLASTYYERGQADMA 255
           ++      A+  R   AI F   AS   + G  D A
Sbjct: 428 LLARAEGYALAGRLEQAIIFLMRASQQVKLGFPDWA 463

Length = 484

>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat

 Score = 38.3 bits (90), Expect = 4e-04
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 303
           EA  NLG A   +G  +EA++ Y + L L P++
Sbjct: 2   EALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34

This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34

>gnl|CDD|179448 PRK02603, PRK02603, photosystem I assembly protein Ycf3; Provisional

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 43/151 (28%), Positives = 67/151 (44%), Gaps = 35/151 (23%)

Query: 145 MKAQ--GLVQEAYSCYLEALRIQPTFAIAWS----NLAGLFMESGDLNRALQYYKEAVKL 198
           M AQ  G   EA   Y EAL+++       S    N+  ++  +G+ ++AL+YY +A++L
Sbjct: 43  MSAQADGEYAEALENYEEALKLEED-PNDRSYILYNMGIIYASNGEHDKALEYYHQALEL 101

Query: 199 KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNL--ASTYYERGQADMAI 256
            P  P A  N+  +Y   G         ++A +        G+   A   +     D A 
Sbjct: 102 NPKQPSALNNIAVIYHKRG---------EKAEEA-------GDQDEAEALF-----DKAA 140

Query: 257 LYYKQAIGCDP-RFLEAYNNLGNALKDVGRV 286
            Y+KQAI   P  ++EA     N LK  GR 
Sbjct: 141 EYWKQAIRLAPNNYIEAQ----NWLKTTGRS 167

Length = 172

>gnl|CDD|176974 CHL00033, ycf3, photosystem I assembly protein Ycf3

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 42/140 (30%), Positives = 64/140 (45%), Gaps = 29/140 (20%)

Query: 145 MKAQ--GLVQEAYSCYLEALRIQP---TFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK 199
           M AQ  G   EA   Y EA+R++      +    N+  +   +G+  +AL+YY +A++  
Sbjct: 43  MSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN 102

Query: 200 PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQA--DMAIL 257
           P  P A  N+            A++C+ R  Q    AI  G+      E  +A  D A  
Sbjct: 103 PFLPQALNNM------------AVICHYRGEQ----AIEQGD-----SEIAEAWFDQAAE 141

Query: 258 YYKQAIGCDP-RFLEAYNNL 276
           Y+KQAI   P  ++EA N L
Sbjct: 142 YWKQAIALAPGNYIEAQNWL 161

Length = 168

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 7/72 (9%)

Query: 305 QALTNLGNIYMEWNMLPAAASYYKATLAVTTGL-------SAPFNNLAVIYKQQGNYADA 357
            AL NL  +         A    +  L +   L       +   NNLA +Y   G+Y +A
Sbjct: 6   AALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEA 65

Query: 358 ISCYNEVLRIDP 369
           +    + L +  
Sbjct: 66  LEYLEKALALRE 77

Length = 78

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 37.8 bits (89), Expect = 5e-04
 Identities = 13/34 (38%), Positives = 21/34 (61%)

Query: 406 AEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 439
           A+A  NL +AY   G  + A++ Y++AL L P+ 
Sbjct: 1   AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|234406 TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA

 Score = 43.5 bits (103), Expect = 5e-04
 Identities = 26/124 (20%), Positives = 48/124 (38%), Gaps = 7/124 (5%)

Query: 249 RGQADMAILYYKQAIGCDPRFLEAY--NNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQA 306
            G+   AI   ++     P  L A     L  A ++  + D+A++ Y + L   P++P  
Sbjct: 66  AGRDKEAIDVCER---YSPVGLPARVLEALAKAYRNEKQWDKALELYRKLLQRDPNNPDG 122

Query: 307 LTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFN-NLAVIYKQQGNYADAISCYNEVL 365
           L  L     +      A  Y K          A     LA + +   ++ DA+  + + L
Sbjct: 123 LLGLALTLADAGKDAEALKYLKE-YVARFPTDAARYEALAYVLRAAEDHLDALQAWQQAL 181

Query: 366 RIDP 369
            ++P
Sbjct: 182 TLEP 185

Members of this protein family are the poly-beta-1,6 N-acetyl-D-glucosamine (PGA) export porin PgaA of Gram-negative bacteria. There is no counterpart in the poly-beta-1,6 N-acetyl-D-glucosamine biosynthesis systems of Gram-positive bacteria such as Staphylococcus epidermidis. The PGA polysaccharide adhesin is a critical determinant of biofilm formation. The conserved C-terminal domain of this outer membrane protein is preceded by a variable number of TPR repeats. Length = 800

>gnl|CDD|236983 PRK11788, PRK11788, tetratricopeptide repeat protein; Provisional

 Score = 43.3 bits (103), Expect = 5e-04
 Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 175 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP 234
           LA   +  GDL+ A    K+A+   P    A + LG++  A G    AI   +R  +  P
Sbjct: 186 LAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDP 245

Query: 235 NAI--AFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQC 292
             +      L   Y   G     + + ++A+   P   +    L   L++    + A   
Sbjct: 246 EYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYP-GADLLLALAQLLEEQEGPEAAQAL 304

Query: 293 YNQCLSLQPS 302
             + L   PS
Sbjct: 305 LREQLRRHPS 314

Length = 389

>gnl|CDD|183140 PRK11447, PRK11447, cellulose synthase subunit BcsC; Provisional

 Score = 43.5 bits (103), Expect = 6e-04
 Identities = 76/391 (19%), Positives = 138/391 (35%), Gaps = 51/391 (13%)

Query: 79  EKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAH 138
           +  ++  A R Y  A ++    + A   L    M +     A +  +QAL ++P   +A 
Sbjct: 363 KANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAV 422

Query: 139 SNLGNLMKAQGLVQEAYSCYLEAL--RIQPTFAIAWSNL--------AGLFMESGDLNRA 188
             L NL + Q    E    ++ +L    + +      +L        A      G   +A
Sbjct: 423 RGLANLYRQQS--PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQA 480

Query: 189 LQYYKEAVKLKPTFPDAYLN--LGNVYKALGMPQEAIMCYQRAVQTRPN----AIAFG-N 241
            +  ++ + L P     +L   L    +  G   +A    +R  Q +PN      A+G  
Sbjct: 481 AELQRQRLALDPG--SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLY 538

Query: 242 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNL--------GNALKDVGRVDEAIQCY 293
           L+ +  +R +A +A L        +    E    L         N L+D G+  EA    
Sbjct: 539 LSGS--DRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL 596

Query: 294 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGN 353
            Q    QP   +    L +   +     AA + Y+  L    G +     L  +   QG+
Sbjct: 597 RQ----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGD 652

Query: 354 YADAISCYNEVLRIDPLAADGLVNR--GNTYKEIGRVTDAIQDYIRAITIRPTMAEAHAN 411
            A A +   ++             R     +  +G    A + + R   + P       +
Sbjct: 653 LAAARAQLAKLPA--TANDSLNTQRRVALAWAALGDTAAAQRTFNR---LIPQAKSQPPS 707

Query: 412 LASA--YKDSGHVEA-------AIKSYKQAL 433
           + SA   +D+   EA       A+++YK A+
Sbjct: 708 MESALVLRDAARFEAQTGQPQQALETYKDAM 738

Length = 1157

>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat

 Score = 37.5 bits (88), Expect = 7e-04
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 342 NNLAVIYKQQGNYADAISCYNEVLRIDP 369
            NL + Y + G+Y +A+  Y + L +DP
Sbjct: 5   YNLGLAYYKLGDYEEALEAYEKALELDP 32

This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 19/41 (46%), Positives = 25/41 (60%)

Query: 406 AEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
           AEA  NL +A    G  + AI++Y++AL L PD  EA  NL
Sbjct: 3   AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNL 43

Length = 69

>gnl|CDD|234406 TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA

 Score = 42.3 bits (100), Expect = 0.001
 Identities = 75/408 (18%), Positives = 132/408 (32%), Gaps = 88/408 (21%)

Query: 72  NMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALN 131
            +A A++ +   D A+  Y   ++  PN  D    LA      G+  EA +  ++ +A  
Sbjct: 91  ALAKAYRNEKQWDKALELYRKLLQRDPNNPDGLLGLALTLADAGKDAEALKYLKEYVARF 150

Query: 132 PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDL------ 185
           P     +  L  +++A     +A   + +AL ++P    A   L  +    G        
Sbjct: 151 PTDAARYEALAYVLRAAEDHLDALQAWQQALTLEPDNPEAALELYRILTRLGAPPAAARL 210

Query: 186 ------------NRALQYYKEAVKLK----PTFPD---------AYLNLGNVYKALGMPQ 220
                        R L++ + A  ++    P+  +         A  +L  +    G PQ
Sbjct: 211 AKQYPDLFTPEDQRWLEHDQAAELVRLGENPSRSEKERFAIADRALADLQALLDKWG-PQ 269

Query: 221 EAIMCYQRAVQTRPNAI--------------------------AFGNLASTYYERGQADM 254
              + Y+RA   R  A+                          A   +A  Y    Q + 
Sbjct: 270 ANPL-YRRARIDRLGALLVRKRYAEVIREYESLEAEGQPLPPYAQEAVADAYLALRQPEK 328

Query: 255 AILYYKQ--AIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP----------- 301
           A+  Y++  A       LE    L  A  +  + DEA    +      P           
Sbjct: 329 ALPIYRELAAAEPADNNLELTIKLFYAYLEAEQYDEAQALLDGLKESTPPQRWDFTRSTK 388

Query: 302 ----SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFN-----NLAVIYKQQG 352
                + +A   L         LP A +     LA      AP N      LA +Y+ +G
Sbjct: 389 APNDDYLEAQQLLVLSLAWRGDLPEAEARLDELLAT-----APGNPWLRLALADVYRARG 443

Query: 353 NYADAISCYNEVLRIDPLAADGLVNRGNTYKEIG--RVTDAIQDYIRA 398
               A   Y +   +DP +      +  T  ++   R  + + D + A
Sbjct: 444 WPRRAEQEYKQAESLDPDSLSAERGQAETALDLQEWRQAEQLTDDLVA 491

Members of this protein family are the poly-beta-1,6 N-acetyl-D-glucosamine (PGA) export porin PgaA of Gram-negative bacteria. There is no counterpart in the poly-beta-1,6 N-acetyl-D-glucosamine biosynthesis systems of Gram-positive bacteria such as Staphylococcus epidermidis. The PGA polysaccharide adhesin is a critical determinant of biofilm formation. The conserved C-terminal domain of this outer membrane protein is preceded by a variable number of TPR repeats. Length = 800

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 38.0 bits (89), Expect = 0.001
 Identities = 19/62 (30%), Positives = 27/62 (43%)

Query: 3  MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRL 62
          +ALA    ++G Y +AL    +   R PL  + LLLLG    +        A    AL  
Sbjct: 1  LALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAA 60

Query: 63 EP 64
          +P
Sbjct: 61 DP 62

Length = 65

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 16/63 (25%), Positives = 21/63 (33%)

Query: 378 RGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRP 437
                   G   +A+     A+   P  AEA   L  A    G +  A    + AL   P
Sbjct: 3   LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62

Query: 438 DFP 440
           D P
Sbjct: 63  DDP 65

Length = 65

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 41.7 bits (98), Expect = 0.001
 Identities = 20/57 (35%), Positives = 32/57 (56%)

Query: 82  DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAH 138
           D  LA+  Y  AI+L PN A+ +++ A A ++ G   EA     +A+ L+P L  A+
Sbjct: 17  DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAY 73

Length = 356

>gnl|CDD|179448 PRK02603, PRK02603, photosystem I assembly protein Ycf3; Provisional

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 19/94 (20%)

Query: 57  EEALRLEP----RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM 112
           EEAL+LE     R +    NM   +   G+ D A+ YY  A+EL P    A +N+A  Y 
Sbjct: 59  EEALKLEEDPNDR-SYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYH 117

Query: 113 RKGR--------------LNEAAQCCRQALALNP 132
           ++G                ++AA+  +QA+ L P
Sbjct: 118 KRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAP 151

Length = 172

>gnl|CDD|233013 TIGR00540, TPR_hemY_coli, heme biosynthesis-associated TPR protein

 Score = 42.3 bits (100), Expect = 0.001
 Identities = 56/244 (22%), Positives = 97/244 (39%), Gaps = 29/244 (11%)

Query: 2   HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIA------- 54
            +  A  +     Y+ AL   +S+  + P  T  L L    Y +  ++D  +        
Sbjct: 137 LLTRAELLLDQRDYEAALAALDSLQAQAPRHTAVLRLALRAYQRSGNWDALLKLLPALRK 196

Query: 55  ----RNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYL---VAIELRPNFADAWSNL 107
                 EEA RLE + A   G +  A +E  D D    ++     A    P  A A    
Sbjct: 197 AKALSPEEAARLE-QQA-YIGLLDEAREE--DADALKTWWKQLPRAERQEPELAVA---A 249

Query: 108 ASAYMRKGRLNEAAQCCRQALA--LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ 165
           A A ++ G  +EA +   +AL    +P L+  +  L        L++ A     + L+  
Sbjct: 250 AEALIQLGDHDEAEKLIEEALKKEWDPELLRLYGRL-QPGDPSPLIKRAE----KWLKKH 304

Query: 166 PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMC 225
           P  A+    L  L +      +A  Y + ++ L PT   A+L L  +++ LG  + A   
Sbjct: 305 PDDALLLLALGRLCLRQQLWGKAQSYLEASLSLAPTEE-AHLELAQLFEQLGDTEAAAQH 363

Query: 226 YQRA 229
           Y+++
Sbjct: 364 YRKS 367

Members of this protein family are uncharacterized tetratricopeptide repeat (TPR) proteins invariably found in heme biosynthesis gene clusters. The absence of any invariant residues other than Ala argues against this protein serving as an enzyme per se. The gene symbol hemY assigned in E. coli is unfortunate in that an unrelated protein, protoporphyrinogen oxidase (HemG in E. coli) is designated HemY in Bacillus subtilis [Unknown function, General]. Length = 367

>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

 Score = 41.6 bits (98), Expect = 0.002
 Identities = 42/154 (27%), Positives = 60/154 (38%), Gaps = 16/154 (10%)

Query: 4   ALAHQMYKSGSYKQALEHSNSVYERNPLRTDN---LLLLGAIYYQLHDYDMCIARNEEAL 60
             A Q Y +G Y +AL+    +    P   DN   L L G I  + +     I R ++AL
Sbjct: 311 GRALQTYLAGQYDEALKLLQPLIAAQP---DNPYYLELAGDILLEANKAKEAIERLKKAL 367

Query: 61  RLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEA 120
            L+P       N+A A  + G    AIR     +   P   + W  LA AY   G   EA
Sbjct: 368 ALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEA 427

Query: 121 AQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEA 154
                 A A      + ++  G L +A   +  A
Sbjct: 428 ----LLARA------EGYALAGRLEQAIIFLMRA 451

Length = 484

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 36.3 bits (85), Expect = 0.002
 Identities = 13/34 (38%), Positives = 22/34 (64%)

Query: 169 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF 202
           A A  NL   +++ GD + AL+YY++A++L P  
Sbjct: 1   AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 35.9 bits (84), Expect = 0.002
 Identities = 14/34 (41%), Positives = 21/34 (61%)

Query: 406 AEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 439
           AEA  NL +AY   G  + A++ Y++AL L P+ 
Sbjct: 1   AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|234406 TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA

 Score = 41.6 bits (98), Expect = 0.002
 Identities = 56/277 (20%), Positives = 94/277 (33%), Gaps = 22/277 (7%)

Query: 183 GDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGN 241
           G    A+   +               L   Y+      +A+  Y++ +Q  P N      
Sbjct: 67  GRDKEAIDVCERY-SPVGLPARVLEALAKAYRNEKQWDKALELYRKLLQRDPNNPDGLLG 125

Query: 242 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP 301
           LA T  + G+   A+ Y K+ +   P     Y  L   L+      +A+Q + Q L+L+P
Sbjct: 126 LALTLADAGKDAEALKYLKEYVARFPTDAARYEALAYVLRAAEDHLDALQAWQQALTLEP 185

Query: 302 SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTG---------LSAPFNNLAVIYKQQG 352
            +P+A   L  I       PAAA   K    + T           +A    L     +  
Sbjct: 186 DNPEAALELYRILTRLGAPPAAARLAKQYPDLFTPEDQRWLEHDQAAELVRLGENPSRSE 245

Query: 353 N----YAD-AISCYNEVL-RIDPLAAD----GLVNRGNTYKEIGRVTDAIQDYIRAITIR 402
                 AD A++    +L +  P A        ++R        R  + I++Y       
Sbjct: 246 KERFAIADRALADLQALLDKWGPQANPLYRRARIDRLGALLVRKRYAEVIREYESLEAEG 305

Query: 403 PTMAE-AHANLASAYKDSGHVEAAIKSYKQALLLRPD 438
             +   A   +A AY      E A+  Y++     P 
Sbjct: 306 QPLPPYAQEAVADAYLALRQPEKALPIYRELAAAEPA 342

Members of this protein family are the poly-beta-1,6 N-acetyl-D-glucosamine (PGA) export porin PgaA of Gram-negative bacteria. There is no counterpart in the poly-beta-1,6 N-acetyl-D-glucosamine biosynthesis systems of Gram-positive bacteria such as Staphylococcus epidermidis. The PGA polysaccharide adhesin is a critical determinant of biofilm formation. The conserved C-terminal domain of this outer membrane protein is preceded by a variable number of TPR repeats. Length = 800

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 17/63 (26%), Positives = 24/63 (38%)

Query: 37 LLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIEL 96
          L L     +  DYD  +A  E AL   P  AE    +  A   +G +  A      A+  
Sbjct: 1  LALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAA 60

Query: 97 RPN 99
           P+
Sbjct: 61 DPD 63

Length = 65

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 40.7 bits (95), Expect = 0.003
 Identities = 60/295 (20%), Positives = 114/295 (38%), Gaps = 26/295 (8%)

Query: 2   HMALAHQM-----YKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARN 56
             A+A  +        G + +AL   +   E +P  T + +   ++  +L D D      
Sbjct: 329 KEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDF 388

Query: 57  EEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGR 116
           ++AL+L     + Y + A     KG+   A + Y  +I+L P+F  +   L     ++G 
Sbjct: 389 DKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGS 448

Query: 117 LNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLA 176
           +  +    R+     P   D ++  G L+  Q    EA   +  A+ ++      + N+ 
Sbjct: 449 IASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVL 508

Query: 177 GLFMESGDLNRALQYYKE-------AVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRA 229
            L  ++  L +  Q + E       A+ + P    A   +  +    G   EA+  ++RA
Sbjct: 509 PLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERA 568

Query: 230 VQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVG 284
            +          LA T  E  QA    + Y +A     +  E Y  L + L+ + 
Sbjct: 569 AE----------LARTEGELVQA----ISYAEATRTQIQVQEDYPVLASKLQGML 609

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 35.9 bits (84), Expect = 0.003
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 67  AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF 100
           A+   N+ NA+ + G  D A+ YY  A+EL PN 
Sbjct: 1   AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 35.5 bits (83), Expect = 0.003
 Identities = 11/33 (33%), Positives = 20/33 (60%)

Query: 372 ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT 404
           A  L N GN Y ++G+  +A++ Y +A+ + P 
Sbjct: 1   AKALYNLGNAYLKLGKYDEALEYYEKALELNPN 33

Length = 34

>gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 26/140 (18%), Positives = 46/140 (32%), Gaps = 6/140 (4%)

Query: 313 IYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQ------QGNYADAISCYNEVLR 366
           I      L        +   +     A   +  ++  Q       GN+ +A+S   +  R
Sbjct: 69  IAKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR 128

Query: 367 IDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAI 426
           + P   +     G    ++GR  +A + Y +A+ + P       NL  +    G +E A 
Sbjct: 129 LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAE 188

Query: 427 KSYKQALLLRPDFPEATCNL 446
                A L          NL
Sbjct: 189 TLLLPAYLSPAADSRVRQNL 208

Length = 257

>gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 36/152 (23%), Positives = 57/152 (37%)

Query: 3   MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRL 62
             LA  +Y  G    +L          P   + L   G    +  ++   ++   +A RL
Sbjct: 70  AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL 129

Query: 63  EPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQ 122
            P   E +  +  A  + G  D A R Y  A+EL PN     +NL  + + +G L +A  
Sbjct: 130 APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAET 189

Query: 123 CCRQALALNPLLVDAHSNLGNLMKAQGLVQEA 154
               A            NL  ++  QG  +EA
Sbjct: 190 LLLPAYLSPAADSRVRQNLALVVGLQGDFREA 221

Length = 257

>gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat

 Score = 35.5 bits (83), Expect = 0.003
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 203 PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
             AY  LG +Y  LG  +EA   Y++A++  PN
Sbjct: 1   ARAYYLLGQIYLQLGDYEEAKEYYEKALELDPN 33

Length = 34

>gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat

 Score = 35.5 bits (83), Expect = 0.003
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 406 AEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 439
           A A+  L   Y   G  E A + Y++AL L P+ 
Sbjct: 1   ARAYYLLGQIYLQLGDYEEAKEYYEKALELDPNN 34

Length = 34

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 35.1 bits (82), Expect = 0.004
 Identities = 16/34 (47%), Positives = 21/34 (61%)

Query: 67  AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF 100
           AE   N+ NA+ + GD D A+ YY  A+EL PN 
Sbjct: 1   AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat

 Score = 35.6 bits (83), Expect = 0.004
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 406 AEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 439
           AEA  NL  AY   G  E A+++Y++AL L P+ 
Sbjct: 1   AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34

This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34

>gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat

 Score = 35.5 bits (83), Expect = 0.004
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 101 ADAWSNLASAYMRKGRLNEAAQCCRQALALNP 132
           A A+  L   Y++ G   EA +   +AL L+P
Sbjct: 1   ARAYYLLGQIYLQLGDYEEAKEYYEKALELDP 32

Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	887
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	100.0
PF13844	468	Glyco_transf_41: Glycosyl transferase family 41; P	100.0
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	100.0
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	100.0
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	100.0
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	100.0
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	100.0
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	100.0
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	100.0
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	100.0
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	100.0
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	99.98
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.98
PLN03077	857	Protein ECB2; Provisional	99.98
PLN03218	1060	maturation of RBCL 1; Provisional	99.97
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.97
PLN03077	857	Protein ECB2; Provisional	99.97
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.97
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.97
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.97
PRK14574	822	hmsH outer membrane protein; Provisional	99.97
PRK14574	822	hmsH outer membrane protein; Provisional	99.96
KOG2003	840	consensus TPR repeat-containing protein [General f	99.96
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.96
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.96
KOG2076	895	consensus RNA polymerase III transcription factor	99.95
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.95
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.94
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.94
KOG1126	638	consensus DNA-binding cell division cycle control	99.94
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.94
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.94
KOG1126	638	consensus DNA-binding cell division cycle control	99.94
KOG2003	840	consensus TPR repeat-containing protein [General f	99.93
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.93
KOG2076	895	consensus RNA polymerase III transcription factor	99.93
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.92
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.92
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.91
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.9
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.9
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.9
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.89
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.89
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.88
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.87
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.86
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.86
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.86
KOG1129	478	consensus TPR repeat-containing protein [General f	99.85
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.85
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.85
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.84
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.84
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.84
PRK12370	553	invasion protein regulator; Provisional	99.83
KOG1129	478	consensus TPR repeat-containing protein [General f	99.83
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.83
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.82
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.82
PRK12370	553	invasion protein regulator; Provisional	99.82
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.79
KOG1125	579	consensus TPR repeat-containing protein [General f	99.79
PRK15490	578	Vi polysaccharide biosynthesis protein TviE; Provi	99.79
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.79
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.79
PRK11189	296	lipoprotein NlpI; Provisional	99.78
PRK11189	296	lipoprotein NlpI; Provisional	99.78
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.78
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.77
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.77
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.76
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.76
KOG1125	579	consensus TPR repeat-containing protein [General f	99.76
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.73
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.73
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.73
PLN02789	320	farnesyltranstransferase	99.72
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.72
PLN02789	320	farnesyltranstransferase	99.71
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.68
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.68
PRK15427	406	colanic acid biosynthesis glycosyltransferase WcaL	99.67
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.66
cd03812	358	GT1_CapH_like This family is most closely related	99.65
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.65
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.64
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.64
cd03792	372	GT1_Trehalose_phosphorylase Trehalose phosphorylas	99.62
cd03805	392	GT1_ALG2_like This family is most closely related	99.62
cd03796	398	GT1_PIG-A_like This family is most closely related	99.62
cd03822	366	GT1_ecORF704_like This family is most closely rela	99.62
cd03818	396	GT1_ExpC_like This family is most closely related	99.61
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.61
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.59
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.58
cd03821	375	GT1_Bme6_like This family is most closely related	99.58
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.58
cd03801	374	GT1_YqgM_like This family is most closely related	99.58
cd03820	348	GT1_amsD_like This family is most closely related	99.58
cd03817	374	GT1_UGDG_like This family is most closely related	99.58
TIGR03088	374	stp2 sugar transferase, PEP-CTERM/EpsH1 system ass	99.58
PLN02949	463	transferase, transferring glycosyl groups	99.58
PLN02846	462	digalactosyldiacylglycerol synthase	99.57
cd03811	353	GT1_WabH_like This family is most closely related	99.56
cd05844	367	GT1_like_7 Glycosyltransferases catalyze the trans	99.55
cd04962	371	GT1_like_5 This family is most closely related to	99.55
PLN02871	465	UDP-sulfoquinovose:DAG sulfoquinovosyltransferase	99.55
cd03799	355	GT1_amsK_like This is a family of GT1 glycosyltran	99.54
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.54
cd03807	365	GT1_WbnK_like This family is most closely related	99.54
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.53
PRK09922	359	UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D	99.52
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.52
cd03800	398	GT1_Sucrose_synthase This family is most closely r	99.51
cd03819	355	GT1_WavL_like This family is most closely related	99.51
PRK15359	144	type III secretion system chaperone protein SscB;	99.5
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.5
cd03816	415	GT1_ALG1_like This family is most closely related	99.5
PLN02501	794	digalactosyldiacylglycerol synthase	99.49
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.49
PRK04841	903	transcriptional regulator MalT; Provisional	99.48
PRK15359	144	type III secretion system chaperone protein SscB;	99.47
PRK10307	412	putative glycosyl transferase; Provisional	99.47
PRK15484	380	lipopolysaccharide 1,2-N-acetylglucosaminetransfer	99.47
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.46
cd04951	360	GT1_WbdM_like This family is most closely related	99.46
cd03814	364	GT1_like_2 This family is most closely related to	99.46
PRK04841	903	transcriptional regulator MalT; Provisional	99.46
cd03809	365	GT1_mtfB_like This family is most closely related	99.45
cd03806	419	GT1_ALG11_like This family is most closely related	99.44
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.44
TIGR02472	439	sucr_P_syn_N sucrose-phosphate synthase, putative,	99.44
cd03795	357	GT1_like_4 This family is most closely related to	99.43
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.43
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.42
TIGR03449	405	mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-ino	99.42
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.42
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.41
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.41
cd03798	377	GT1_wlbH_like This family is most closely related	99.41
cd03825	365	GT1_wcfI_like This family is most closely related	99.41
cd03808	359	GT1_cap1E_like This family is most closely related	99.4
PF00534	172	Glycos_transf_1: Glycosyl transferases group 1; In	99.4
cd03823	359	GT1_ExpE7_like This family is most closely related	99.4
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.39
cd03802	335	GT1_AviGT4_like This family is most closely relate	99.39
PLN02939	977	transferase, transferring glycosyl groups	99.39
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.39
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.38
TIGR02149	388	glgA_Coryne glycogen synthase, Corynebacterium fam	99.38
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.36
cd04949	372	GT1_gtfA_like This family is most closely related	99.35
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	99.35
cd04955	363	GT1_like_6 This family is most closely related to	99.35
PRK05749	425	3-deoxy-D-manno-octulosonic-acid transferase; Revi	99.34
cd03794	394	GT1_wbuB_like This family is most closely related	99.32
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.32
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.31
KOG0553	304	consensus TPR repeat-containing protein [General f	99.31
PLN02316	1036	synthase/transferase	99.3
cd03804	351	GT1_wbaZ_like This family is most closely related	99.28
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.28
cd03813	475	GT1_like_3 This family is most closely related to	99.28
PRK13609	380	diacylglycerol glucosyltransferase; Provisional	99.27
cd04946	407	GT1_AmsK_like This family is most closely related	99.26
TIGR02470	784	sucr_synth sucrose synthase. This model represents	99.26
TIGR03087	397	stp1 sugar transferase, PEP-CTERM/EpsH1 system ass	99.25
TIGR02468	1050	sucrsPsyn_pln sucrose phosphate synthase/possible	99.25
TIGR02918	500	accessory Sec system glycosylation protein GtfA. M	99.24
KOG0553	304	consensus TPR repeat-containing protein [General f	99.24
PLN02605	382	monogalactosyldiacylglycerol synthase	99.24
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.23
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	99.22
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	99.2
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.2
PRK00654	466	glgA glycogen synthase; Provisional	99.2
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	99.2
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.2
TIGR00236	365	wecB UDP-N-acetylglucosamine 2-epimerase. Epimeras	99.19
PLN00142	815	sucrose synthase	99.18
cd03785	350	GT1_MurG MurG is an N-acetylglucosaminyltransferas	99.17
cd03786	363	GT1_UDP-GlcNAc_2-Epimerase Bacterial members of th	99.17
TIGR02095	473	glgA glycogen/starch synthases, ADP-glucose type.	99.16
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.15
PRK14099	485	glycogen synthase; Provisional	99.14
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.14
KOG1111	426	consensus N-acetylglucosaminyltransferase complex,	99.13
PHA01633	335	putative glycosyl transferase group 1	99.12
PLN02275	371	transferase, transferring glycosyl groups	99.12
PRK00726	357	murG undecaprenyldiphospho-muramoylpentapeptide be	99.11
PRK13608	391	diacylglycerol glucosyltransferase; Provisional	99.09
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	99.08
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.07
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.07
TIGR01133	348	murG undecaprenyldiphospho-muramoylpentapeptide be	99.06
KOG1941	518	consensus Acetylcholine receptor-associated protei	99.05
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.04
KOG2300	629	consensus Uncharacterized conserved protein [Funct	99.04
PF13692	135	Glyco_trans_1_4: Glycosyl transferases group 1; PD	99.03
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.02
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.01
cd03791	476	GT1_Glycogen_synthase_DULL1_like This family is mo	99.0
PRK14098	489	glycogen synthase; Provisional	99.0
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.97
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.97
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.95
PRK10125	405	putative glycosyl transferase; Provisional	98.93
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.93
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.92
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.91
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.91
KOG1941	518	consensus Acetylcholine receptor-associated protei	98.91
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.9
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.9
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.88
cd03788	460	GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a	98.87
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.87
PRK00025	380	lpxB lipid-A-disaccharide synthase; Reviewed	98.85
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.85
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.85
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.84
KOG2471	696	consensus TPR repeat-containing protein [General f	98.84
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.84
PHA01630	331	putative group 1 glycosyl transferase	98.84
cd01635	229	Glycosyltransferase_GTB_type Glycosyltransferases	98.83
KOG2300	629	consensus Uncharacterized conserved protein [Funct	98.83
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.82
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.82
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.82
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.82
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.81
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.81
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.81
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.8
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.8
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.8
TIGR00215	385	lpxB lipid-A-disaccharide synthase. Lipid-A precur	98.79
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.79
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.79
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.79
TIGR02400	456	trehalose_OtsA alpha,alpha-trehalose-phosphate syn	98.79
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.77
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.77
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.77
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.76
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.75
PRK11906	458	transcriptional regulator; Provisional	98.75
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.74
PRK10803	263	tol-pal system protein YbgF; Provisional	98.73
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.71
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.71
PRK11906	458	transcriptional regulator; Provisional	98.71
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.7
KOG1258	577	consensus mRNA processing protein [RNA processing	98.7
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.69
PRK15331	165	chaperone protein SicA; Provisional	98.67
PRK10803	263	tol-pal system protein YbgF; Provisional	98.66
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.65
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	98.64
PRK15331	165	chaperone protein SicA; Provisional	98.61
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.6
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.59
cd04950	373	GT1_like_1 Glycosyltransferases catalyze the trans	98.58
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.57
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.56
KOG2471	696	consensus TPR repeat-containing protein [General f	98.55
KOG4234	271	consensus TPR repeat-containing protein [General f	98.54
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.54
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.52
PF13512	142	TPR_18: Tetratricopeptide repeat	98.51
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.5
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.49
KOG0853	495	consensus Glycosyltransferase [Cell wall/membrane/	98.49
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.48
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	98.48
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	98.46
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.44
KOG4234	271	consensus TPR repeat-containing protein [General f	98.44
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.42
PF12688	120	TPR_5: Tetratrico peptide repeat	98.41
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.41
PF12688	120	TPR_5: Tetratrico peptide repeat	98.4
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.4
KOG4555	175	consensus TPR repeat-containing protein [Function	98.39
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	98.37
PLN03063	797	alpha,alpha-trehalose-phosphate synthase (UDP-form	98.36
PF13371	73	TPR_9: Tetratricopeptide repeat	98.35
PF13512	142	TPR_18: Tetratricopeptide repeat	98.33
PF13371	73	TPR_9: Tetratricopeptide repeat	98.33
KOG4507	886	consensus Uncharacterized conserved protein, conta	98.31
TIGR03713	519	acc_sec_asp1 accessory Sec system protein Asp1. Th	98.3
PRK14501	726	putative bifunctional trehalose-6-phosphate syntha	98.29
KOG1258	577	consensus mRNA processing protein [RNA processing	98.29
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	98.27
COG0438	381	RfaG Glycosyltransferase [Cell envelope biogenesis	98.19
KOG4555	175	consensus TPR repeat-containing protein [Function	98.17
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.17
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.16
cd03793	590	GT1_Glycogen_synthase_GSY2_like Glycogen synthase,	98.15
KOG1585	308	consensus Protein required for fusion of vesicles	98.12
KOG1387	465	consensus Glycosyltransferase [Cell wall/membrane/	98.12
TIGR02919	438	accessory Sec system glycosyltransferase GtfB. Mem	98.09
TIGR02398	487	gluc_glyc_Psyn glucosylglycerol-phosphate synthase	98.05
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.04
cd03784	401	GT1_Gtf_like This family includes the Gtfs, a grou	98.04
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	98.03
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.03
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.0
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.99
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.98
KOG1586	288	consensus Protein required for fusion of vesicles	97.95
COG1819	406	Glycosyl transferases, related to UDP-glucuronosyl	97.94
KOG1586	288	consensus Protein required for fusion of vesicles	97.94
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.92
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.91
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	97.91
PLN03004	451	UDP-glycosyltransferase	97.91
TIGR03568	365	NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase,	97.9
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.9
TIGR01426	392	MGT glycosyltransferase, MGT family. This model de	97.89
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.87
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.85
PRK09814	333	beta-1,6-galactofuranosyltransferase; Provisional	97.84
KOG1585	308	consensus Protein required for fusion of vesicles	97.84
TIGR03492	396	conserved hypothetical protein. This protein famil	97.84
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.78
TIGR03590	279	PseG pseudaminic acid biosynthesis-associated prot	97.76
COG0707	357	MurG UDP-N-acetylglucosamine:LPS N-acetylglucosami	97.75
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	97.74
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	97.74
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.74
PLN02410	451	UDP-glucoronosyl/UDP-glucosyl transferase family p	97.73
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	97.73
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.71
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.7
PLN02670	472	transferase, transferring glycosyl groups	97.69
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.69
COG1519	419	KdtA 3-deoxy-D-manno-octulosonic-acid transferase	97.69
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	97.67
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.66
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.65
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.65
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	97.65
PF13524	92	Glyco_trans_1_2: Glycosyl transferases group 1	97.64
PLN02562	448	UDP-glycosyltransferase	97.63
PF13428	44	TPR_14: Tetratricopeptide repeat	97.63
PRK12446	352	undecaprenyldiphospho-muramoylpentapeptide beta-N-	97.62
PF02684	373	LpxB: Lipid-A-disaccharide synthetase; InterPro: I	97.62
PLN02554	481	UDP-glycosyltransferase family protein	97.61
PLN00414	446	glycosyltransferase family protein	97.61
PF13428	44	TPR_14: Tetratricopeptide repeat	97.61
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.6
PLN02173	449	UDP-glucosyl transferase family protein	97.6
PLN00164	480	glucosyltransferase; Provisional	97.6
PLN02863	477	UDP-glucoronosyl/UDP-glucosyl transferase family p	97.59
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.59
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.59
PLN02764	453	glycosyltransferase family protein	97.59
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.58
PLN02992	481	coniferyl-alcohol glucosyltransferase	97.57
PLN02208	442	glycosyltransferase family protein	97.54
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	97.54
PLN02448	459	UDP-glycosyltransferase family protein	97.53
PLN02167	475	UDP-glycosyltransferase family protein	97.52
PLN03015	470	UDP-glucosyl transferase	97.51
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.5
PF00201	500	UDPGT: UDP-glucoronosyl and UDP-glucosyl transfera	97.5
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.49
PLN02207	468	UDP-glycosyltransferase	97.48
PF13431	34	TPR_17: Tetratricopeptide repeat	97.48
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.47
PLN03064	934	alpha,alpha-trehalose-phosphate synthase (UDP-form	97.47
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.46
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.46
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.45
PHA03392	507	egt ecdysteroid UDP-glucosyltransferase; Provision	97.45
PLN02555	480	limonoid glucosyltransferase	97.45
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.42
PLN02152	455	indole-3-acetate beta-glucosyltransferase	97.42
PF13431	34	TPR_17: Tetratricopeptide repeat	97.39
PLN03007	482	UDP-glucosyltransferase family protein	97.39
PLN02210	456	UDP-glucosyl transferase	97.38
PF02350	346	Epimerase_2: UDP-N-acetylglucosamine 2-epimerase;	97.37
PRK01021	608	lpxB lipid-A-disaccharide synthase; Reviewed	97.37
PLN02534	491	UDP-glycosyltransferase	97.34
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	97.3
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	97.28
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.26
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	97.2
PF13528	318	Glyco_trans_1_3: Glycosyl transferase family 1	97.18
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.18
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.17
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.17
PF04007	335	DUF354: Protein of unknown function (DUF354); Inte	97.16
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	97.15
PRK11619	644	lytic murein transglycosylase; Provisional	97.12
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.08
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.06
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.06
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	97.04
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	97.02
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.02
PF06258	311	Mito_fiss_Elm1: Mitochondrial fission ELM1; InterP	96.98
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	96.97
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.95
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	96.94
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.93
KOG2941	444	consensus Beta-1,4-mannosyltransferase [Posttransl	96.86
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	96.85
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	96.79
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	96.78
PF01075	247	Glyco_transf_9: Glycosyltransferase family 9 (hept	96.73
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	96.71
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	96.69
KOG3783	546	consensus Uncharacterized conserved protein [Funct	96.68
TIGR00661	321	MJ1255 conserved hypothetical protein. This model	96.65
COG0297	487	GlgA Glycogen synthase [Carbohydrate transport and	96.61
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	96.52
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.51
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	96.46
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.45
COG5159	421	RPN6 26S proteasome regulatory complex component [	96.4
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	96.36
COG0381	383	WecB UDP-N-acetylglucosamine 2-epimerase [Cell env	96.34
COG1817	346	Uncharacterized protein conserved in archaea [Func	96.27
COG0763	381	LpxB Lipid A disaccharide synthetase [Cell envelop	96.24
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	96.22
PRK11619	644	lytic murein transglycosylase; Provisional	96.18
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.13
TIGR02195	334	heptsyl_trn_II lipopolysaccharide heptosyltransfer	96.1
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	96.07
TIGR02201	344	heptsyl_trn_III lipopolysaccharide heptosyltransfe	96.07
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	96.06
PRK10422	352	lipopolysaccharide core biosynthesis protein; Prov	96.03
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.02
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	95.99
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	95.98
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.86
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	95.86
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	95.86
COG1747	711	Uncharacterized N-terminal domain of the transcrip	95.79
cd03789	279	GT1_LPS_heptosyltransferase Lipopolysaccharide hep	95.78
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	95.69
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	95.69
KOG3783	546	consensus Uncharacterized conserved protein [Funct	95.66
KOG1192	496	consensus UDP-glucuronosyl and UDP-glucosyl transf	95.64
PRK10916	348	ADP-heptose:LPS heptosyltransferase II; Provisiona	95.63
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	95.6
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	95.57
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	95.48
KOG1463	411	consensus 26S proteasome regulatory complex, subun	95.36
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	95.33
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	95.25
COG5159	421	RPN6 26S proteasome regulatory complex component [	95.25
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	95.2
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	95.12
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	95.03
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	94.95
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	94.86
PRK10941	269	hypothetical protein; Provisional	94.86
PRK10941	269	hypothetical protein; Provisional	94.81
PF13041	50	PPR_2: PPR repeat family	94.76
TIGR02094	601	more_P_ylases alpha-glucan phosphorylases. This fa	94.67
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	94.64
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	94.64
KOG1463	411	consensus 26S proteasome regulatory complex, subun	94.62
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	94.44
PF07429	360	Glyco_transf_56: 4-alpha-L-fucosyltransferase glyc	94.18
cd04299	778	GT1_Glycogen_Phosphorylase_like This family is mos	93.98
COG4976	287	Predicted methyltransferase (contains TPR repeat)	93.92
PF04101	167	Glyco_tran_28_C: Glycosyltransferase family 28 C-t	93.9
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	93.89
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	93.79
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	93.77
PF05159	269	Capsule_synth: Capsule polysaccharide biosynthesis	93.64
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	93.63
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	93.62
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	93.61
COG1747	711	Uncharacterized N-terminal domain of the transcrip	93.59
COG0859	334	RfaF ADP-heptose:LPS heptosyltransferase [Cell env	93.55
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	93.49
PRK14089	347	ipid-A-disaccharide synthase; Provisional	93.47
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	93.27
KOG3364	149	consensus Membrane protein involved in organellar	93.25
TIGR03609	298	S_layer_CsaB polysaccharide pyruvyl transferase Cs	93.21
PF13041	50	PPR_2: PPR repeat family	93.1
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	92.93
KOG2422	665	consensus Uncharacterized conserved protein [Funct	92.79
COG5191	435	Uncharacterized conserved protein, contains HAT (H	92.66
COG5191	435	Uncharacterized conserved protein, contains HAT (H	92.63
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	92.42

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=3.1e-161  Score=1225.79  Aligned_cols=880  Identities=55%  Similarity=0.910  Sum_probs=865.3

Q ss_pred             hhHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002729            2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG   81 (887)
Q Consensus         2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g   81 (887)
                      ++++|...++.|+|++|++....+...+|.+.+.+..++.++++..++++....-..+++.+|.-.++|.++|+++...|
T Consensus        51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg  130 (966)
T KOG4626|consen   51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG  130 (966)
T ss_pred             HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002729           82 DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEA  161 (887)
Q Consensus        82 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  161 (887)
                      ++++|+..|+.+++++|++.++|.+++.++...|+.+.|..+|..+++++|....+...+|.++..+|+..+|..+|.++
T Consensus       131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkA  210 (966)
T KOG4626|consen  131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKA  210 (966)
T ss_pred             hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHh
Q 002729          162 LRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFG  240 (887)
Q Consensus       162 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~  240 (887)
                      ++..|..+.+|.+||.++..+|+...|+..|+++++++|+..++|.++|.+|...+.+++|+..|.+++...|+ ..++.
T Consensus       211 i~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~g  290 (966)
T KOG4626|consen  211 IETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHG  290 (966)
T ss_pred             HhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             hHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCCh
Q 002729          241 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNML  320 (887)
Q Consensus       241 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~  320 (887)
                      +++.+|+++|..+-|+..|+++++..|+.+++|.+++.++...|+..+|..+|.+++.+.|+.+++.++||.+|.++|++
T Consensus       291 Nla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~  370 (966)
T KOG4626|consen  291 NLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKI  370 (966)
T ss_pred             ceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002729          321 PAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAIT  400 (887)
Q Consensus       321 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  400 (887)
                      ++|..+|+++++..|+.+.+.++||.+|.++|++++|+.+|++++.+.|..++++.++|..|..+|+.+.|+++|.+++.
T Consensus       371 e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~  450 (966)
T KOG4626|consen  371 EEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ  450 (966)
T ss_pred             hHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHhhhcCChhhHhHHHHHHHHHHHHHhccCCCC
Q 002729          401 IRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLP  480 (887)
Q Consensus       401 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~p  480 (887)
                      .+|..++++.+||.+|...|+..+|+..|++++++.|+.+++++|++.+++..++|.+..+.++++.+++++++.....|
T Consensus       451 ~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl~sivrdql~~~rlp  530 (966)
T KOG4626|consen  451 INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKLVSIVRDQLEKNRLP  530 (966)
T ss_pred             cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHHHHHHHHHHHhhhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcccccCcCCHHHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCccccCCCcccceeeeecCCCCCChhHHhhhHHhh
Q 002729          481 SVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLRVGYVSSDFGNHPLSHLMGSVFG  560 (887)
Q Consensus       481 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lriGyvs~d~~~h~~~~~~~~~~~  560 (887)
                      ++.|+++++|+++|....+++++++.+|......++.||+.||...|    .+.+|||||||||||++||+++++.+++.
T Consensus       531 svhP~hsm~ypl~~~~~~aia~k~a~~c~~~~~~~~k~pyth~~~l~----~~~~rlrIGYvSsDFgnHp~Shlmqsv~g  606 (966)
T KOG4626|consen  531 SVHPHHSMLYPLSHILRKAIAAKHANLCLDKVHVLGKPPYTHPDNLK----VKEGRLRIGYVSSDFGNHPTSHLMQSVPG  606 (966)
T ss_pred             ccCcccccccccchHHHHHHHHHHhhhhHHHHHhccCCCCCChhhCC----CCcCceEEEeecccccCCchHHHhccCcC
Confidence            99999999999999999999999999999999999999999988766    34589999999999999999999999999


Q ss_pred             cCCCCCcEEEEEecCCCCChHHHHHHHhhcCceEECCCCCHHHHHHHHHhCCCeEEEecCCcCCCCchhhhhcCCCceEE
Q 002729          561 MHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQV  640 (887)
Q Consensus       561 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~~r~apvq~  640 (887)
                      +||++++|||||+.+++++..++.++.....||+|+++++...+|..|++|+|||||.+.|||.|+|..+|++|||||||
T Consensus       607 mHdr~kveVfcYals~~d~t~fR~kv~~e~ehf~Dls~i~~~kiA~~I~qD~I~ILvnlnGyTkgarneifAlrPAPIQv  686 (966)
T KOG4626|consen  607 MHDRSKVEVFCYALSVNDGTNFRDKVMKEAEHFVDLSQIPCNKIADKIRQDKIHILVNLNGYTKGARNEIFALRPAPIQV  686 (966)
T ss_pred             cCCccceEEEEEEeecCCCchHHHHHHhhccceeehhcCChHHHHHHHhhcCceEEEeccccccccccceeeccCCceeE
Confidence            99999999999999999999999999999999999999998899999999999999999999999999999999999999


Q ss_pred             eccccCCCCCCCcccEEEecCccCCCCcCCCCccceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecC
Q 002729          641 SYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFN  720 (887)
Q Consensus       641 ~~~g~~~t~g~~~~d~~~~d~~~~p~~~~~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~  720 (887)
                      +|+|||+|||.++|||+|+|.++.|++....|+|+|++||+||+++++.+...++.+|...|+|.++|||+|+|||||||
T Consensus       687 ~wlGyPgTtGa~~mDYiITDs~tsPl~~a~~ysEkLv~lPh~ffi~d~~qk~~~~~dpn~kP~r~~y~Lp~d~vvf~~FN  766 (966)
T KOG4626|consen  687 MWLGYPGTTGATFMDYIITDSVTSPLELAQQYSEKLVYLPHCFFIGDHKQKNQDVLDPNNKPTRSQYGLPEDAVVFCNFN  766 (966)
T ss_pred             EeecCCCCCCCceeeEEeecccCChHHHHHHHHHHHhhCCceEEecCcccccccccCCCCCCCCCCCCCCCCeEEEeech
Confidence            99999999999999999999999999999999999999999999999998877888888889999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCC
Q 002729          721 QLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCN  800 (887)
Q Consensus       721 ~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~  800 (887)
                      +++|++|.++..|++||++||+|+||++.++..++++++..+++.|++++||+|.+....+||+++++.+||+|||++++
T Consensus       767 qLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge~rf~ty~~~~Gl~p~riifs~va~k~eHvrr~~LaDv~LDTplcn  846 (966)
T KOG4626|consen  767 QLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEQRFRTYAEQLGLEPDRIIFSPVAAKEEHVRRGQLADVCLDTPLCN  846 (966)
T ss_pred             hhhcCCHHHHHHHHHHHHhCCcceeEEEeccccchHHHHHHHHHhCCCccceeeccccchHHHHHhhhhhhhcccCcCcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCC
Q 002729          801 AHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLF  880 (887)
Q Consensus       801 g~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~~~~~~l~  880 (887)
                      |+||++|.||+|||+|||+|+++++||++|+|..+|+++ +|+.+.|||+++||+|++|.+.++.+|.++|..+..||||
T Consensus       847 GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~h-liak~~eEY~~iaV~Latd~~~L~~lr~~l~~~r~~splf  925 (966)
T KOG4626|consen  847 GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGH-LIAKNREEYVQIAVRLATDKEYLKKLRAKLRKARASSPLF  925 (966)
T ss_pred             CcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHH-HHhhhHHHHHHHHHHhhcCHHHHHHHHHHHHHHhcCCCcc
Confidence            999999999999999999999999999999999999999 9999999999999999999999999999999999999999


Q ss_pred             CcCCcc
Q 002729          881 DTARWV  886 (887)
Q Consensus       881 d~~~~~  886 (887)
                      |+++|+
T Consensus       926 d~~q~~  931 (966)
T KOG4626|consen  926 DTKQYA  931 (966)
T ss_pred             CchHHH
Confidence            999986

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.2e-103  Score=804.21  Aligned_cols=521  Identities=32%  Similarity=0.511  Sum_probs=447.0

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhcCCCcHHHHHHH------HHHHH
Q 002729          345 AVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIR-AITIRPTMAEAHANL------ASAYK  417 (887)
Q Consensus       345 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~-al~~~p~~~~~~~~l------a~~~~  417 (887)
                      ...+...+....+.-.+...+..+|++..+..+++......|....+...+.. +....|++......+      +....
T Consensus        74 si~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  153 (620)
T COG3914          74 SILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLK  153 (620)
T ss_pred             HhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHH
Confidence            44455566777777777778888888888888888777777766666655555 677777776665555      78888


Q ss_pred             hCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHhhhcCChhhH--hHHHHHHHHHHHHHhccCCCCCCCCcccccCcCCHH
Q 002729          418 DSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDR--DRMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPIDPM  495 (887)
Q Consensus       418 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~a--~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  495 (887)
                      .+|+..++....+++.++.|+++.+...++......++|.+-  ..++......          -...+|..+.+..++.
T Consensus       154 ~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs~~~~~~tnl~~~~~~~----------~~~~~~~~~~~~d~p~  223 (620)
T COG3914         154 LLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCSWPEEAPTNLLSQLALF----------LGIYGFSLAYLADDPL  223 (620)
T ss_pred             HhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhccchhccchHHHHHHHHH----------hhccccchhhhccchh
Confidence            888999999999999999999999998888888888887621  1111111111          0112344455556677


Q ss_pred             HHHHHHHHHHhhhhhhhhccCCCCCCCCCCCccccCCCcccceeeeecCCCCCChhHHhhhHHhhcCCCCCcEEEEEecC
Q 002729          496 LALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALS  575 (887)
Q Consensus       496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lriGyvs~d~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~  575 (887)
                      ....++.++.+.+....+  ..+++..+. .  +....++|+||||+|+||+.|+||+++++++++|||++||||+|+.+
T Consensus       224 ~~l~~~~q~~~i~~~~~~--~~~~~~~~~-~--~~~~~~~rlRvGylS~dlr~Havg~l~~~v~e~hDRdkfEvfay~~g  298 (620)
T COG3914         224 KNLAIANQLLKILSQNAP--ELVRFPIRD-E--NIKRNGKRLRVGYLSSDLRSHAVGFLLRWVFEYHDRDKFEVFAYSLG  298 (620)
T ss_pred             hhHHHHHHHHHHhcccCC--Cccccccch-h--hccccccceeEEEeccccccchHHHHHHHHHHHhchhheEEEEEecC
Confidence            788888888776553222  112221111 1  12355789999999999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHhhcCceEECCCCCHHHHHHHHHhCCCeEEEecCCcCCCCchhhhhcCCCceEEeccccCCCCCCCccc
Q 002729          576 PNDGTEWRQRTQSEAEHFVDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYID  655 (887)
Q Consensus       576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~~r~apvq~~~~g~~~t~g~~~~d  655 (887)
                      +...+..+.+|+..+++|.++.+|++.++|.+|+.|+||||||++|||..+|++||++|||||||||+|||+|+|+|.||
T Consensus       299 ~~~~dal~~rI~a~~~~~~~~~~~dd~e~a~~I~~d~IdILvDl~g~T~d~r~~v~A~RpAPiqvswlGy~aT~g~p~~D  378 (620)
T COG3914         299 PPHTDALQERISAAVEKWYPIGRMDDAEIANAIRTDGIDILVDLDGHTVDTRCQVFAHRPAPIQVSWLGYPATTGSPNMD  378 (620)
T ss_pred             CCCchhHHHHHHHhhhheeccCCcCHHHHHHHHHhcCCeEEEeccCceeccchhhhhcCCCceEEeecccccccCCCcce
Confidence            77778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCccCCCCcCCCCccceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHHHH
Q 002729          656 YLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCN  735 (887)
Q Consensus       656 ~~~~d~~~~p~~~~~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~  735 (887)
                      |||+|+++.||+++.+|+|+|||||.||+..+...      +..++++|++.|||++++||+|||+.+|++|+++++|++
T Consensus       379 Y~I~D~y~vPp~ae~yysEkl~RLp~cy~p~d~~~------~v~p~~sR~~lglp~~avVf~c~~n~~K~~pev~~~wmq  452 (620)
T COG3914         379 YFISDPYTVPPTAEEYYSEKLWRLPQCYQPVDGFE------PVTPPPSRAQLGLPEDAVVFCCFNNYFKITPEVFALWMQ  452 (620)
T ss_pred             EEeeCceecCchHHHHHHHHHHhcccccCCCCCcc------cCCCCcchhhcCCCCCeEEEEecCCcccCCHHHHHHHHH
Confidence            99999999999999999999999999998877542      234457999999999999999999999999999999999


Q ss_pred             HHhhcCCceEEEecC--ChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCCchhHHHHHHhCC
Q 002729          736 ILRRVPNSALWLLRF--PAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGL  813 (887)
Q Consensus       736 il~~~p~~~l~~~~~--~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gv  813 (887)
                      ||+++|+|+|||.++  .+...++|+..|++.||+.+|++|.|..+.++|.++|..+||+||||||+||||++|||||||
T Consensus       453 IL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~~iADlvLDTyPY~g~TTa~daLwm~v  532 (620)
T COG3914         453 ILSAVPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPPAPNEDHRARYGIADLVLDTYPYGGHTTASDALWMGV  532 (620)
T ss_pred             HHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhhchhheeeecccCCCccchHHHHHhcC
Confidence            999999999999987  455678999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeeecccchhhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCCcCCccC
Q 002729          814 PMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVS  887 (887)
Q Consensus       814 Pvvt~~g~~~~~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~~~~~~l~d~~~~~~  887 (887)
                      ||||+.|++|++|+|+||++++|++| +||+|.++||++||++++|...+++.|..++..+.+|||||++.|+|
T Consensus       533 PVlT~~G~~FasR~~~si~~~agi~e-~vA~s~~dYV~~av~~g~dral~q~~r~~l~~~r~tspL~d~~~far  605 (620)
T COG3914         533 PVLTRVGEQFASRNGASIATNAGIPE-LVADSRADYVEKAVAFGSDRALRQQVRAELKRSRQTSPLFDPKAFAR  605 (620)
T ss_pred             ceeeeccHHHHHhhhHHHHHhcCCch-hhcCCHHHHHHHHHHhcccHHHHHhhHHHHHhccccCcccCHHHHHH
Confidence            99999999999999999999999999 99999999999999999999999999999999999999999999975

>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A

Probab=100.00  E-value=1e-96  Score=773.88  Aligned_cols=350  Identities=50%  Similarity=0.865  Sum_probs=288.4

Q ss_pred             ceeeeecCCCCCChhHHhhhHHhhcCCCCCcEEEEEecCCCCChHHHHHHHhhcCceEECCCCC-HHHHHHHHHhCCCeE
Q 002729          537 LRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMS-SDMIAKLINEDKIQI  615 (887)
Q Consensus       537 lriGyvs~d~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~di  615 (887)
                      |||||||+||++||+++|+.+++++||+++|||+||+.++.+++.++++++..+++|+++.+++ +.++|++|++|+|||
T Consensus         1 LRIGyvS~Df~~Hpv~~l~~~ll~~hDr~rfev~~Ys~~~~d~~~~~~~~~~~~~~~~dl~~~~~~~~~A~~Ir~D~IDI   80 (468)
T PF13844_consen    1 LRIGYVSSDFRNHPVGHLLQPLLENHDRSRFEVFCYSLGPDDGDTFRQRIRAEADHFVDLSGLSDDAEAAQRIRADGIDI   80 (468)
T ss_dssp             EEEEEEES-SSSSHHHHHHHHHHHHHHHHTEEEEEEESS---SCHHHHHHHHHSEEEEEEEE-TTSHHHHHHHHHTT-SE
T ss_pred             CEEEEECCcchhCHHHHHHHHHHHhcCcccEEEEEEECCCCCCcHHHHHHHHhCCeEEECccCCcHHHHHHHHHHCCCCE
Confidence            7999999999999999999999999999999999999999887788999999999999999987 689999999999999


Q ss_pred             EEecCCcCCCCchhhhhcCCCceEEeccccCCCCCCCcccEEEecCccCCCCcCCCCccceeecCCccccCCCccccc--
Q 002729          616 LINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNM--  693 (887)
Q Consensus       616 l~~~~~~~~~~~~~~~~~r~apvq~~~~g~~~t~g~~~~d~~~~d~~~~p~~~~~~~~e~~~~lp~~~~~~~~~~~~~--  693 (887)
                      ||||+|||.|+|+.+|++|||||||+|||||+|||++.|||+|+|++++|++.+.+|+|||+|||++|+|+++....+  
T Consensus        81 LVDL~GhT~~~R~~ifA~RpAPVQvswlGyp~TtG~~~mDY~ItD~~~~P~~~~~~ysEkLirLP~sy~~~d~~~~~~~~  160 (468)
T PF13844_consen   81 LVDLSGHTAGNRLEIFALRPAPVQVSWLGYPGTTGLPAMDYIITDPVTDPPEAEEHYSEKLIRLPHSYFCNDHRQMFPHL  160 (468)
T ss_dssp             EEESSTSSTSSSHHHHHT-SSSEEEEESSSSS---STT--EEEEETTTS-GGGGGG-SSEEEEESS-S----HHHH-GGG
T ss_pred             EEeCCCcCCCCHhHHHhcCCcceEEEecCCCcccCCcccCEEEECCCcCCcccccCCccceEEccCceEECChHHhhhhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998763110  


Q ss_pred             --------------------------------------------------------------------------------
Q 002729          694 --------------------------------------------------------------------------------  693 (887)
Q Consensus       694 --------------------------------------------------------------------------------  693 (887)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (468)
T PF13844_consen  161 KERIVLEEKDDSRVVDNVAVINATDLSPLLEKTEVKDTVRENIVLSGDGKDATSTEVELPVLEQPTTTPIEQMIASGQVQ  240 (468)
T ss_dssp             SS-EEEE--------SSSEEEE-TTHHHHHHTSST-EEEEE---------------EEEEEEESSHHHHHHHHHHHT-SE
T ss_pred             hhceEeccccCCcccchhhhhhhhcCchhhhhcchHHHHHHHHhhcCCchhcccceEecccccCccHHHHHHHHHcCCee
Confidence                                                                                            


Q ss_pred             -------------------------cCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEe
Q 002729          694 -------------------------DVLDPNCQPKRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLL  748 (887)
Q Consensus       694 -------------------------~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~  748 (887)
                                               .++.....++|+++|||++++||||||+++|++|+++++|++||+++|+|+|||.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~R~~~gLp~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~  320 (468)
T PF13844_consen  241 TSVNGVVVQNGLATTQTNNKAATGEEVPQNIVVTTRAQYGLPEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLL  320 (468)
T ss_dssp             EEETTEEEEECCGHHHH-HHHHTTSS--SSEEEEETGGGT--SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEE
T ss_pred             EeECCEEeecccchhhhhccccCCccCCccccccCHHHcCCCCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEe
Confidence                                     0000001238999999999999999999999999999999999999999999999


Q ss_pred             cCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCCchhHHHHHHhCCceeeecccchhhhhH
Q 002729          749 RFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVA  828 (887)
Q Consensus       749 ~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~~~r~~  828 (887)
                      .++...++++++.++++||+++||+|.+..+.++|+.+|+.+||+|||||||||||++|||||||||||++|++++||+|
T Consensus       321 ~~~~~~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~~~~~~DI~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~  400 (468)
T PF13844_consen  321 RFPASGEARLRRRFAAHGVDPDRIIFSPVAPREEHLRRYQLADICLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVG  400 (468)
T ss_dssp             ETSTTHHHHHHHHHHHTTS-GGGEEEEE---HHHHHHHGGG-SEEE--SSS--SHHHHHHHHHT--EEB---SSGGGSHH
T ss_pred             eCCHHHHHHHHHHHHHcCCChhhEEEcCCCCHHHHHHHhhhCCEEeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHH
Confidence            88877788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCCcCCccC
Q 002729          829 GSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVS  887 (887)
Q Consensus       829 ~~~l~~~g~~~~~~~~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~~~~~~l~d~~~~~~  887 (887)
                      +|+|+++|++| |||.|.++||++|++|++|++.|+++|++||+++.+|||||+++|++
T Consensus       401 aSiL~~lGl~E-lIA~s~~eYv~~Av~La~D~~~l~~lR~~Lr~~~~~SpLfd~~~~ar  458 (468)
T PF13844_consen  401 ASILRALGLPE-LIADSEEEYVEIAVRLATDPERLRALRAKLRDRRSKSPLFDPKRFAR  458 (468)
T ss_dssp             HHHHHHHT-GG-GB-SSHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSGGG-HHHHHH
T ss_pred             HHHHHHcCCch-hcCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhCCCCCHHHHHH
Confidence            99999999999 99999999999999999999999999999999999999999999874

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-46  Score=386.36  Aligned_cols=438  Identities=31%  Similarity=0.440  Sum_probs=428.9

Q ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 002729           32 RTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAY  111 (887)
Q Consensus        32 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  111 (887)
                      .......++.-.++.|+|++|++....+-..+|.+.+....++.++++..++++....-..+++..|...+++.++|.++
T Consensus        47 ~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~  126 (966)
T KOG4626|consen   47 GSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANIL  126 (966)
T ss_pred             cchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHH
Confidence            34557788889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 002729          112 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQY  191 (887)
Q Consensus       112 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  191 (887)
                      ...|++++|+..|+.++++.|+..++|.++|.++..+|+.+.|..+|..+++++|....+...+|.++...|+..+|...
T Consensus       127 kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~c  206 (966)
T KOG4626|consen  127 KERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKAC  206 (966)
T ss_pred             HHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcH
Q 002729          192 YKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFL  270 (887)
Q Consensus       192 ~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~  270 (887)
                      |.++++..|....+|.++|.++...|+...|+..|+++++++|+ ..+|.++|.+|...+.+++|+..|.+++...|+..
T Consensus       207 YlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A  286 (966)
T KOG4626|consen  207 YLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHA  286 (966)
T ss_pred             HHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcch
Confidence            99999999999999999999999999999999999999999999 99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHH
Q 002729          271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQ  350 (887)
Q Consensus       271 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~  350 (887)
                      .++.+++.+|.++|..+-|+..|+++++..|+.++++.+++.++...|+..+|..+|.+++...|+.+.+.++||.+|.+
T Consensus       287 ~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E  366 (966)
T KOG4626|consen  287 VAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYRE  366 (966)
T ss_pred             hhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHH
Q 002729          351 QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYK  430 (887)
Q Consensus       351 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  430 (887)
                      +|++++|..+|+++++..|+...++.++|.+|.++|++++|+.+|+.++.+.|..++++.++|..|..+|+...|++.|.
T Consensus       367 ~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~  446 (966)
T KOG4626|consen  367 QGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYT  446 (966)
T ss_pred             hccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCChHHHHHHHHHhhhcCChhhHhHHHHHHHHH
Q 002729          431 QALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGI  469 (887)
Q Consensus       431 ~al~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  469 (887)
                      +++..+|...+++.||+..+-..|+..+|...++++.++
T Consensus       447 rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl  485 (966)
T KOG4626|consen  447 RAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL  485 (966)
T ss_pred             HHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence            999999999999999999999999999999999988873

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=1.2e-39  Score=402.75  Aligned_cols=462  Identities=23%  Similarity=0.288  Sum_probs=351.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 002729            4 ALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDI   83 (887)
Q Consensus         4 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~   83 (887)
                      .++..+.+.|++++|+..++++....|.++..+..+|.++...|++++|++.|+++++.+|++..++..++.++...|++
T Consensus       436 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~  515 (899)
T TIGR02917       436 LLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNP  515 (899)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCH
Confidence            34555666666666666666666666666777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002729           84 DLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALR  163 (887)
Q Consensus        84 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  163 (887)
                      ++|++.|+++++.+|++..++..++.++...|++++|...++++++.+|.+...+..++..+...|++++|+..++++++
T Consensus       516 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  595 (899)
T TIGR02917       516 DDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAAD  595 (899)
T ss_pred             HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             hCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHhhH
Q 002729          164 IQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNL  242 (887)
Q Consensus       164 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l  242 (887)
                      ..|.+...|..++.++...|++++|+..++++++..|.++..+..++.++...|++++|...|+++++..|+ ...+..+
T Consensus       596 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  675 (899)
T TIGR02917       596 AAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGL  675 (899)
T ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            777777777777777777777777777777777777777777777777777777777777777777777766 6677777


Q ss_pred             HHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhH
Q 002729          243 ASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPA  322 (887)
Q Consensus       243 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~  322 (887)
                      +.++...|++++|+..++.+.+..|.....+..+|.++...|++++|++.|+++++..|++ ..+..++.++...|++++
T Consensus       676 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~  754 (899)
T TIGR02917       676 AQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAE  754 (899)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHH
Confidence            7777777777777777777777777777777777777777777777777777777777766 566677777777888888


Q ss_pred             HHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002729          323 AASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR  402 (887)
Q Consensus       323 A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  402 (887)
                      |...++++++..|++..++..++.++...|++++|+..|+++++.+|+++.++..++.++...|+ .+|+..++++++..
T Consensus       755 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~  833 (899)
T TIGR02917       755 AVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA  833 (899)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence            88888887777777777788888888888888888888888888888888888888888888887 77888888888888


Q ss_pred             CCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHhhhcCChhhHhHHHHHHH
Q 002729          403 PTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVE  467 (887)
Q Consensus       403 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  467 (887)
                      |+++.++..+|.++...|++++|.++|+++++.+|.++.++.+++..+...|++++|...++++.
T Consensus       834 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  898 (899)
T TIGR02917       834 PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL  898 (899)
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            88877888888888888888888888888888888888888888888888888777777776654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=1.4e-38  Score=393.33  Aligned_cols=465  Identities=23%  Similarity=0.254  Sum_probs=308.9

Q ss_pred             hhHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----------------
Q 002729            2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR----------------   65 (887)
Q Consensus         2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----------------   65 (887)
                      +..++..+...|++++|+..|+++++.+|++...+..+|.++...|++++|++.++++++.+|.                
T Consensus       366 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~  445 (899)
T TIGR02917       366 LSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSG  445 (899)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcC
Confidence            3456777777777777777777777777777777777777777777777777777766666554                


Q ss_pred             ------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002729           66 ------------------FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQA  127 (887)
Q Consensus        66 ------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~  127 (887)
                                        ++..+..+|.++...|++++|+..|+++++.+|++..++..++.++...|++++|.+.++++
T Consensus       446 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  525 (899)
T TIGR02917       446 QFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKV  525 (899)
T ss_pred             CHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence                              44455555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 002729          128 LALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYL  207 (887)
Q Consensus       128 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~  207 (887)
                      ++.+|.+..++..++.++...|++++|...++++++.+|.+...+..++..+...|++++|+..++++++..|.++..+.
T Consensus       526 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  605 (899)
T TIGR02917       526 LTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWL  605 (899)
T ss_pred             HHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence            55555555555555555555556666666665555555555555555666666666666666666666666666666666


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 002729          208 NLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRV  286 (887)
Q Consensus       208 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~  286 (887)
                      .++.++...|++++|+..|+++++..|+ ...+..++.++...|++++|...++++++.+|++..++..++.++...|++
T Consensus       606 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  685 (899)
T TIGR02917       606 MLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRT  685 (899)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Confidence            6666666666666666666666665554 555566666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHh
Q 002729          287 DEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLR  366 (887)
Q Consensus       287 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  366 (887)
                      ++|...++.+.+..|.++..+..+|.++...|++++|...|++++...|++ ..+..++.++...|++++|++.++++++
T Consensus       686 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~  764 (899)
T TIGR02917       686 ESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLK  764 (899)
T ss_pred             HHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            666666666666666666666666777777777777777777777666665 5566667777777777777777777777


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHHHHH
Q 002729          367 IDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL  446 (887)
Q Consensus       367 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  446 (887)
                      .+|++..+++.+|.++...|++++|++.|+++++..|+++.++..++.++...|+ .+|+.+++++++..|+++..+..+
T Consensus       765 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~  843 (899)
T TIGR02917       765 THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTL  843 (899)
T ss_pred             hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHH
Confidence            7777777777777777777777777777777777777777777777777777777 667777777777777777777777


Q ss_pred             HHHhhhcCChhhHhHHHHHHHH
Q 002729          447 LHTLQCVCSWEDRDRMFSEVEG  468 (887)
Q Consensus       447 ~~~~~~~g~~~~a~~~~~~~~~  468 (887)
                      +..+...|++++|...++++.+
T Consensus       844 ~~~~~~~g~~~~A~~~~~~a~~  865 (899)
T TIGR02917       844 GWLLVEKGEADRALPLLRKAVN  865 (899)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHh
Confidence            7777777777777776666655

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=100.00  E-value=1.7e-36  Score=373.66  Aligned_cols=467  Identities=16%  Similarity=0.107  Sum_probs=365.2

Q ss_pred             hhHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHH-----------
Q 002729            2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECY-----------   70 (887)
Q Consensus         2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-----------   70 (887)
                      ++.+++.+...++.+.|.+.+++++..+|+++.++..++.++...|+.++|.+.++++++.+|+++.+.           
T Consensus        31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~  110 (1157)
T PRK11447         31 LLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTP  110 (1157)
T ss_pred             HHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCC
Confidence            567888999999999999999999999999999999999999999999999999999999999987653           


Q ss_pred             -----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH-HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002729           71 -----GNMANAWKEKGDIDLAIRYYLVAIELRPNFADA-WSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNL  144 (887)
Q Consensus        71 -----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~  144 (887)
                           ..+|..+...|++++|++.|+++++.+|.+... ...+..+....|++++|+..++++++.+|++..++..++.+
T Consensus       111 ~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~l  190 (1157)
T PRK11447        111 EGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALL  190 (1157)
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence                 566778899999999999999999988876542 22223333346899999999999999999999999999999


Q ss_pred             HHHcCChHHHHHHHHHHHhhCC----------------------------------ChHHH-------------------
Q 002729          145 MKAQGLVQEAYSCYLEALRIQP----------------------------------TFAIA-------------------  171 (887)
Q Consensus       145 ~~~~g~~~~A~~~~~~al~~~p----------------------------------~~~~~-------------------  171 (887)
                      +...|++++|+..++++++..+                                  +....                   
T Consensus       191 l~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~  270 (1157)
T PRK11447        191 LFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF  270 (1157)
T ss_pred             HHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch
Confidence            9999999999999988754322                                  11100                   


Q ss_pred             -HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChh-------------
Q 002729          172 -WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAI-------------  237 (887)
Q Consensus       172 -~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-------------  237 (887)
                       ...++..+...|++++|+..|+++++.+|+++.++..+|.++.+.|++++|+..|+++++..|+..             
T Consensus       271 ~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~  350 (1157)
T PRK11447        271 RARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNR  350 (1157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhh
Confidence             012366778889999999999999999999999999999999999999999999999999887621             


Q ss_pred             --HHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHH---
Q 002729          238 --AFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGN---  312 (887)
Q Consensus       238 --~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~---  312 (887)
                        ....++..+...|++++|+..|++++..+|++..++..+|.++...|++++|++.|+++++.+|++..++..++.   
T Consensus       351 ~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~  430 (1157)
T PRK11447        351 YWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR  430 (1157)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence              123447788889999999999999999999999999999999999999999999999999999988766554443   


Q ss_pred             ---------------------------------------HHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCC
Q 002729          313 ---------------------------------------IYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGN  353 (887)
Q Consensus       313 ---------------------------------------~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  353 (887)
                                                             .+...|++++|+..|+++++.+|+++.++..++.+|.+.|+
T Consensus       431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~  510 (1157)
T PRK11447        431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ  510 (1157)
T ss_pred             hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence                                                   34467899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHH-------------------------------------------------------
Q 002729          354 YADAISCYNEVLRIDPLAADGLVNR-------------------------------------------------------  378 (887)
Q Consensus       354 ~~~A~~~~~~al~~~p~~~~~~~~l-------------------------------------------------------  378 (887)
                      +++|+..++++++.+|.++..++.+                                                       
T Consensus       511 ~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~  590 (1157)
T PRK11447        511 RSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA  590 (1157)
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence            9999999999988888776655444                                                       


Q ss_pred             -------------------HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 002729          379 -------------------GNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF  439 (887)
Q Consensus       379 -------------------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  439 (887)
                                         |.++.+.|++++|++.|+++++.+|+++.++..++.+|...|++++|++.++++++..|++
T Consensus       591 eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~  670 (1157)
T PRK11447        591 EAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDS  670 (1157)
T ss_pred             HHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCC
Confidence                               4444445555555555555555555555555555555555555555555555555555555


Q ss_pred             hHHHHHHHHHhhhcCChhhHhHHHHHHHH
Q 002729          440 PEATCNLLHTLQCVCSWEDRDRMFSEVEG  468 (887)
Q Consensus       440 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  468 (887)
                      +.++..++.++...|++++|...++++..
T Consensus       671 ~~~~~~la~~~~~~g~~~eA~~~~~~al~  699 (1157)
T PRK11447        671 LNTQRRVALAWAALGDTAAAQRTFNRLIP  699 (1157)
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence            55555555555555555555555544433

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=100.00  E-value=1.5e-36  Score=374.31  Aligned_cols=466  Identities=18%  Similarity=0.135  Sum_probs=403.0

Q ss_pred             hHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002729            3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTD-NLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG   81 (887)
Q Consensus         3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g   81 (887)
                      +.+|..+...|++++|++.|+++++.+|.+.. +...........|++++|++.++++++.+|+++.++..+|.++...|
T Consensus       116 l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g  195 (1157)
T PRK11447        116 LQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSG  195 (1157)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccC
Confidence            56788899999999999999999998887653 22233333445699999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCC----------------------------------CcHH---H-----------------HHHH
Q 002729           82 DIDLAIRYYLVAIELRP----------------------------------NFAD---A-----------------WSNL  107 (887)
Q Consensus        82 ~~~~A~~~~~~al~~~p----------------------------------~~~~---~-----------------~~~l  107 (887)
                      ++++|+..++++++..+                                  +...   +                 ...+
T Consensus       196 ~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~  275 (1157)
T PRK11447        196 RRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQ  275 (1157)
T ss_pred             CHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHH
Confidence            99999999998865332                                  1110   0                 0123


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHH--------------HHH
Q 002729          108 ASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAI--------------AWS  173 (887)
Q Consensus       108 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~~~  173 (887)
                      |.++...|++++|+..|+++++.+|++..++..+|.++.+.|++++|+..|+++++.+|++..              ...
T Consensus       276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~  355 (1157)
T PRK11447        276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI  355 (1157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence            677888999999999999999999999999999999999999999999999999999887642              123


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHhh-----------
Q 002729          174 NLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGN-----------  241 (887)
Q Consensus       174 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~-----------  241 (887)
                      .++..+...|++++|+..|+++++.+|++..++..+|.++...|++++|++.|+++++.+|+ ..++..           
T Consensus       356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~  435 (1157)
T PRK11447        356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPE  435 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHH
Confidence            45778889999999999999999999999999999999999999999999999999998887 333332           


Q ss_pred             -------------------------------HHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 002729          242 -------------------------------LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAI  290 (887)
Q Consensus       242 -------------------------------la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~  290 (887)
                                                     ++..+...|++++|++.|+++++.+|++..+++.++.++...|++++|+
T Consensus       436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~  515 (1157)
T PRK11447        436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQAD  515 (1157)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence                                           3445567899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHH----------------------------------------
Q 002729          291 QCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT----------------------------------------  330 (887)
Q Consensus       291 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----------------------------------------  330 (887)
                      ..++++++..|+++..++.++..+...+++++|+..++++                                        
T Consensus       516 ~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~  595 (1157)
T PRK11447        516 ALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEAL  595 (1157)
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHH
Confidence            9999999999999998888887777777777777665542                                        


Q ss_pred             HhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 002729          331 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHA  410 (887)
Q Consensus       331 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  410 (887)
                      ++..|.++..+..+|.++.+.|++++|+..|+++++.+|+++.++..++.++...|++++|++.++++++..|++..++.
T Consensus       596 l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~  675 (1157)
T PRK11447        596 LRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQR  675 (1157)
T ss_pred             HHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHH
Confidence            22467788889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHcCCCChH------HHHHHHHHhhhcCChhhHhHHHHHHHH
Q 002729          411 NLASAYKDSGHVEAAIKSYKQALLLRPDFPE------ATCNLLHTLQCVCSWEDRDRMFSEVEG  468 (887)
Q Consensus       411 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~g~~~~a~~~~~~~~~  468 (887)
                      .+|.++...|++++|.+.|+++++..|+++.      ++..++..+...|++++|...|+++..
T Consensus       676 ~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~  739 (1157)
T PRK11447        676 RVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV  739 (1157)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            9999999999999999999999998876543      455667888899999999999988854

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=100.00  E-value=8.6e-35  Score=337.32  Aligned_cols=433  Identities=15%  Similarity=0.158  Sum_probs=340.3

Q ss_pred             hHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002729            3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD   82 (887)
Q Consensus         3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~   82 (887)
                      ..+|..+++.|+|++|+..|++++...|+ +..+..+|.+|..+|++++|++.++++++.+|++..+++.+|.+|..+|+
T Consensus       131 k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~  209 (615)
T TIGR00990       131 KEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK  209 (615)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence            45678888888888888888888888874 66788888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002729           83 IDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEAL  162 (887)
Q Consensus        83 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  162 (887)
                      +++|+..|..+...++.+......+......    ..+.......++..|.+...+..++..+.. .....+...+....
T Consensus       210 ~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  284 (615)
T TIGR00990       210 YADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQS-FRPKPRPAGLEDSN  284 (615)
T ss_pred             HHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHH-ccCCcchhhhhccc
Confidence            8888888877766655433322222111111    344555566666666665555555554422 22333333344444


Q ss_pred             hhCCChHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-
Q 002729          163 RIQPTFAIAWSNLAGLFM---ESGDLNRALQYYKEAVKLK---PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-  235 (887)
Q Consensus       163 ~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~~l~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-  235 (887)
                      +.++.....+..++..+.   ..+++++|++.|+++++.+   |....++..+|.++...|++++|+..|+++++.+|+ 
T Consensus       285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~  364 (615)
T TIGR00990       285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRV  364 (615)
T ss_pred             ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence            455554444555554432   3478899999999998764   666778899999999999999999999999999888 


Q ss_pred             hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHH
Q 002729          236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM  315 (887)
Q Consensus       236 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  315 (887)
                      ...+..++.++...|++++|+..++++++.+|++..+++.+|.++...|++++|+..|+++++.+|++...+..+|.++.
T Consensus       365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~  444 (615)
T TIGR00990       365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY  444 (615)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHH
Confidence            77889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH------HHHHHHHH-HHcCCH
Q 002729          316 EWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADG------LVNRGNTY-KEIGRV  388 (887)
Q Consensus       316 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~~l~~~~-~~~g~~  388 (887)
                      +.|++++|+..|++++...|+++..++.+|.++...|++++|++.|++++++.|.....      +...+..+ ...|++
T Consensus       445 ~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~  524 (615)
T TIGR00990       445 KEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDF  524 (615)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhH
Confidence            99999999999999999999999999999999999999999999999999988864332      22233333 346899


Q ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChH
Q 002729          389 TDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE  441 (887)
Q Consensus       389 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  441 (887)
                      ++|++.++++++++|++..++..+|.++...|++++|+++|++++++.+...+
T Consensus       525 ~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e  577 (615)
T TIGR00990       525 IEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE  577 (615)
T ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence            99999999999999999889999999999999999999999999998876554

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=100.00  E-value=4.3e-34  Score=331.48  Aligned_cols=433  Identities=17%  Similarity=0.203  Sum_probs=367.9

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002729           33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM  112 (887)
Q Consensus        33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  112 (887)
                      ...+..+|..++..|+|++|+..|+++++..|+ +..+..+|.+|...|++++|+..++++++.+|++..++..+|.+|.
T Consensus       127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~  205 (615)
T TIGR00990       127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD  205 (615)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            345678899999999999999999999999996 7789999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHH
Q 002729          113 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYY  192 (887)
Q Consensus       113 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  192 (887)
                      .+|++++|+..|..+...++.+......+......    ..+.......++..|.+...+..++..+. ......+...+
T Consensus       206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  280 (615)
T TIGR00990       206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQ-SFRPKPRPAGL  280 (615)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHH-HccCCcchhhh
Confidence            99999999999988877765544322222211111    34555666677777777666666666442 22333333444


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHH---HcCChHHHHHHHHHHHhhC---CC-hhHHhhHHHHHHHcCChHHHHHHHHHHHhc
Q 002729          193 KEAVKLKPTFPDAYLNLGNVYK---ALGMPQEAIMCYQRAVQTR---PN-AIAFGNLASTYYERGQADMAILYYKQAIGC  265 (887)
Q Consensus       193 ~~~l~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~---p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  265 (887)
                      ....+.++.....+..++..+.   ..+++++|++.|+++++..   |+ ..++..++.++...|++++|+..++++++.
T Consensus       281 ~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l  360 (615)
T TIGR00990       281 EDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL  360 (615)
T ss_pred             hcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            5555555655555555554433   3478999999999999864   44 778999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHH
Q 002729          266 DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLA  345 (887)
Q Consensus       266 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la  345 (887)
                      +|+....+..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|++++..+|++...+..+|
T Consensus       361 ~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la  440 (615)
T TIGR00990       361 DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLG  440 (615)
T ss_pred             CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH------HHH-HHHHHh
Q 002729          346 VIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAH------ANL-ASAYKD  418 (887)
Q Consensus       346 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------~~l-a~~~~~  418 (887)
                      .++.++|++++|+..|+++++..|.++.++..+|.++...|++++|++.|++++++.|++...+      ... +..+..
T Consensus       441 ~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~  520 (615)
T TIGR00990       441 VTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW  520 (615)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999998753322      222 334445


Q ss_pred             CCCHHHHHHHHHHHHHcCCCChHHHHHHHHHhhhcCChhhHhHHHHHHHHHHH
Q 002729          419 SGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIR  471 (887)
Q Consensus       419 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  471 (887)
                      .|++++|++.++++++++|++..++..++.++...|++++|...|+++.++.+
T Consensus       521 ~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~  573 (615)
T TIGR00990       521 KQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELAR  573 (615)
T ss_pred             hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence            79999999999999999999999999999999999999999999999988654

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=100.00  E-value=3.4e-32  Score=319.00  Aligned_cols=456  Identities=17%  Similarity=0.086  Sum_probs=329.4

Q ss_pred             hhHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002729            2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG   81 (887)
Q Consensus         2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g   81 (887)
                      +|..|..+...|++++|+..|+++++.+|+++.+++.++.+|...|++++|+..++++++.+|.+...+..++.+    +
T Consensus        47 ~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i----~  122 (987)
T PRK09782         47 RLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI----P  122 (987)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh----c
Confidence            467788888889999999999999999999999999999999999999999999999999999998888888666    9


Q ss_pred             CHHHHHHHHHHHHhcCCCcHHHHHHHHHH--------HHH--------------------------------cCChHHHH
Q 002729           82 DIDLAIRYYLVAIELRPNFADAWSNLASA--------YMR--------------------------------KGRLNEAA  121 (887)
Q Consensus        82 ~~~~A~~~~~~al~~~p~~~~~~~~la~~--------~~~--------------------------------~g~~~~A~  121 (887)
                      ++++|+..|+++++.+|++.+++..++..        |.+                                +|++++|+
T Consensus       123 ~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai  202 (987)
T PRK09782        123 VEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQAD  202 (987)
T ss_pred             cChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHH
Confidence            99999999999999999988777666665        333                                44444444


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Q 002729          122 QCCRQALALNPLLVDAHSNLGNLMKA-QGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK-  199 (887)
Q Consensus       122 ~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-  199 (887)
                      ..++++.+.+|.+......++.+|.. +++ +++..+++..++   .++.++..++..|.+.|+.++|.+.+++.-... 
T Consensus       203 ~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk---~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~  278 (987)
T PRK09782        203 TLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIF---TDPQSRITYATALAYRGEKARLQHYLIENKPLFT  278 (987)
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcc---cCHHHHHHHHHHHHHCCCHHHHHHHHHhCccccc
Confidence            44444444444444444444444444 233 444444332111   334444455555555555555554443321110 


Q ss_pred             --------------------------------------------------------------------------------
Q 002729          200 --------------------------------------------------------------------------------  199 (887)
Q Consensus       200 --------------------------------------------------------------------------------  199 (887)
                                                                                                      
T Consensus       279 ~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  358 (987)
T PRK09782        279 TDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNK  358 (987)
T ss_pred             CCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCch
Confidence                                                                                            


Q ss_pred             --------------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh---------------------------------
Q 002729          200 --------------PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT---------------------------------  232 (887)
Q Consensus       200 --------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------------------------  232 (887)
                                    |.+...+..++......|+.++|..+|+++...                                 
T Consensus       359 ~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l  438 (987)
T PRK09782        359 AEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAIL  438 (987)
T ss_pred             hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHh
Confidence                          112222333334444455555555555443320                                 


Q ss_pred             --------------------------------CC---ChhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHH
Q 002729          233 --------------------------------RP---NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLG  277 (887)
Q Consensus       233 --------------------------------~p---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la  277 (887)
                                                      .|   +...+..+|.++.. ++.++|+..+.+++...|+.. ....++
T Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA  516 (987)
T PRK09782        439 SKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVA  516 (987)
T ss_pred             ccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHH
Confidence                                            01   23456788888776 788888888888888888754 355566


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHH
Q 002729          278 NALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADA  357 (887)
Q Consensus       278 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  357 (887)
                      .++...|++++|+..++++....|. ...+..+|.++.+.|++++|..+++++++..|+....+..++......|++++|
T Consensus       517 ~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eA  595 (987)
T PRK09782        517 YQAYQVEDYATALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELA  595 (987)
T ss_pred             HHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHH
Confidence            6667888888888888887665444 345677788888888888888888888888877776666666666667888888


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 002729          358 ISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRP  437 (887)
Q Consensus       358 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  437 (887)
                      +..++++++.+|+ +..+..+|.++.+.|++++|+..|+++++.+|+++.++.++|.++...|++++|+..|+++++.+|
T Consensus       596 l~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P  674 (987)
T PRK09782        596 LNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP  674 (987)
T ss_pred             HHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            8888888888885 778888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CChHHHHHHHHHhhhcCChhhHhHHHHHHHHH
Q 002729          438 DFPEATCNLLHTLQCVCSWEDRDRMFSEVEGI  469 (887)
Q Consensus       438 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  469 (887)
                      +++.++++++.++...|+.++|...++++.++
T Consensus       675 ~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l  706 (987)
T PRK09782        675 DDPALIRQLAYVNQRLDDMAATQHYARLVIDD  706 (987)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            88888888888888888888888877777654

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.1e-32  Score=299.63  Aligned_cols=468  Identities=19%  Similarity=0.245  Sum_probs=295.1

Q ss_pred             hhHHHHHHHhcCCHHHHHHHHHHHHhhCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 002729            2 HMALAHQMYKSGSYKQALEHSNSVYERNPLR-TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEK   80 (887)
Q Consensus         2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~   80 (887)
                      ++..|...+..|+|..|+.+|++++..+|.. ++....+|.|+.++|+.+.|+..|+++++++|.++.++..||.+-...
T Consensus       167 LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~  246 (1018)
T KOG2002|consen  167 LLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNF  246 (1018)
T ss_pred             HHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHc
Confidence            4566778888888888888888888888743 667777888888888888888888888888877666666666555444


Q ss_pred             CC---HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCChHHH
Q 002729           81 GD---IDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNP---LLVDAHSNLGNLMKAQGLVQEA  154 (887)
Q Consensus        81 g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~la~~~~~~g~~~~A  154 (887)
                      .+   +..+...+.++...++.+|.+...++..++-.|++..+..+...++....   -..+.++.+|.++..+|++++|
T Consensus       247 ~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA  326 (1018)
T KOG2002|consen  247 NDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKA  326 (1018)
T ss_pred             cchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHH
Confidence            32   44566666666666666665555555555555555555555555544331   1223355555555555555555


Q ss_pred             HHHHHHHHhhCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC----ChHHHHHHHHHH
Q 002729          155 YSCYLEALRIQPTF-AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG----MPQEAIMCYQRA  229 (887)
Q Consensus       155 ~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~  229 (887)
                      ..+|.++++.++++ .-.++.+|+.|...|+++.|...|++.++..|++.++...+|.+|...+    ..++|..++.++
T Consensus       327 ~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~  406 (1018)
T KOG2002|consen  327 FKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKV  406 (1018)
T ss_pred             HHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHH
Confidence            55555555555544 4444455555555555555555555555555555555555554444443    233344444444


Q ss_pred             HhhCCC---------------------------------------hhHHhhHHHHHHHcCChHHHHHHHHHHHhc-----
Q 002729          230 VQTRPN---------------------------------------AIAFGNLASTYYERGQADMAILYYKQAIGC-----  265 (887)
Q Consensus       230 ~~~~p~---------------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----  265 (887)
                      ++..|.                                       .+.++++|..++..|++.+|...+.++++.     
T Consensus       407 ~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~  486 (1018)
T KOG2002|consen  407 LEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVA  486 (1018)
T ss_pred             HhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhc
Confidence            433332                                       455555555566666666666666655533     


Q ss_pred             CCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchh
Q 002729          266 DPRF-----LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAP  340 (887)
Q Consensus       266 ~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  340 (887)
                      +++.     ....++++.++...++++.|.+.|+.+++.+|...+.+..+|.+....++..+|...++.++..+..++.+
T Consensus       487 n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~a  566 (1018)
T KOG2002|consen  487 NKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNA  566 (1018)
T ss_pred             CccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHH
Confidence            1111     12355566666666666666666666666666666666666655555566666666666666666666666


Q ss_pred             HhhHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHhcCCCcH
Q 002729          341 FNNLAVIYKQQGNYADAISCYNEVLRID--PLAADGLVNRGNTYKE------------IGRVTDAIQDYIRAITIRPTMA  406 (887)
Q Consensus       341 ~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~al~~~p~~~  406 (887)
                      +..+|..+....++..|.+-|+..++..  ..++.++..+|+++.+            .+.+++|++.|.++++.+|.|.
T Consensus       567 rsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~  646 (1018)
T KOG2002|consen  567 RSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNM  646 (1018)
T ss_pred             HHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchh
Confidence            6666666665555555555554444432  1344555566665543            2567888899999999999998


Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHhhhcCChhhHhHHHHHHHHH
Q 002729          407 EAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGI  469 (887)
Q Consensus       407 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  469 (887)
                      .+-+.+|.++...|++.+|+.+|.++.+-..++.++|.|++++|..+|+|..|..+|+.+.+-
T Consensus       647 yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkk  709 (1018)
T KOG2002|consen  647 YAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKK  709 (1018)
T ss_pred             hhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888999999999999999999999998888888889999999999999888888888877663

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.2e-32  Score=295.01  Aligned_cols=463  Identities=21%  Similarity=0.296  Sum_probs=344.4

Q ss_pred             CHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHcCCHHHHHHHH
Q 002729           14 SYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR---FAECYGNMANAWKEKGDIDLAIRYY   90 (887)
Q Consensus        14 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~   90 (887)
                      .+..+..++.++...++.+|.++..++.-++..|+|+.+..+...++.....   -++.++.+|++|..+|+|++|..+|
T Consensus       251 s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY  330 (1018)
T KOG2002|consen  251 SYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYY  330 (1018)
T ss_pred             HHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence            3445555555555555555556666666666666666666666666654422   2455777777777777777777777


Q ss_pred             HHHHhcCCCc-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----ChHHHHHHHHHHHhhC
Q 002729           91 LVAIELRPNF-ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQG----LVQEAYSCYLEALRIQ  165 (887)
Q Consensus        91 ~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~  165 (887)
                      .++++.++++ .-.++.+|+.|...|+++.|..+|+++++..|++.++...+|.+|...+    ..+.|..+..++++..
T Consensus       331 ~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~  410 (1018)
T KOG2002|consen  331 MESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT  410 (1018)
T ss_pred             HHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc
Confidence            7777777766 5566777777777777777777777777777777777777777776664    4566677777777777


Q ss_pred             CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-----CCC
Q 002729          166 PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL-----KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT-----RPN  235 (887)
Q Consensus       166 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~  235 (887)
                      |.+..+|..++.++....-+.. +..|.+++..     .+-.++.++++|..++..|++++|...|.+++..     +++
T Consensus       411 ~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~d  489 (1018)
T KOG2002|consen  411 PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKD  489 (1018)
T ss_pred             cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcc
Confidence            7777777777776665544443 6666666532     2334567788888888888888888888888765     111


Q ss_pred             ------hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHh
Q 002729          236 ------AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTN  309 (887)
Q Consensus       236 ------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  309 (887)
                            ....++++.++...++++.|.+.|..+++..|...++|..+|......++..+|...++.++..+..++.++..
T Consensus       490 e~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl  569 (1018)
T KOG2002|consen  490 EGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSL  569 (1018)
T ss_pred             ccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHH
Confidence                  22467888888888888888888888888888888888888877777788888888888888877776666666


Q ss_pred             HHHHHHH------------------------------------------------cCChhHHHHHHHHHHhccCCCchhH
Q 002729          310 LGNIYME------------------------------------------------WNMLPAAASYYKATLAVTTGLSAPF  341 (887)
Q Consensus       310 l~~~~~~------------------------------------------------~g~~~~A~~~~~~~~~~~~~~~~~~  341 (887)
                      +|.++..                                                .+.+++|++.|.+++..+|.|..+-
T Consensus       570 ~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAA  649 (1018)
T KOG2002|consen  570 LGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAA  649 (1018)
T ss_pred             HHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhc
Confidence            5544432                                                2446788899999999999999999


Q ss_pred             hhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHhC
Q 002729          342 NNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR--PTMAEAHANLASAYKDS  419 (887)
Q Consensus       342 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~  419 (887)
                      +.+|.++...|++.+|+.+|.++.+-..+..++|.++|.||..+|+|..|++.|+.+++..  .++.++...||.++...
T Consensus       650 NGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~  729 (1018)
T KOG2002|consen  650 NGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEA  729 (1018)
T ss_pred             cchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHh
Confidence            9999999999999999999999988777788999999999999999999999999999864  45688999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCChHHHHHHHHHhhhcCC------------hhhHhHHHHHHHHHHHHHhccC
Q 002729          420 GHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCS------------WEDRDRMFSEVEGIIRRQVNMS  477 (887)
Q Consensus       420 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~------------~~~a~~~~~~~~~~~~~~~~~~  477 (887)
                      |.+.+|.+...+++.+.|.++...+|++..+...+.            ..++...++.+.++|..+...+
T Consensus       730 ~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~  799 (1018)
T KOG2002|consen  730 GKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNG  799 (1018)
T ss_pred             hhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999998877654331            2334445555566666665544

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=100.00  E-value=5e-30  Score=302.39  Aligned_cols=422  Identities=14%  Similarity=0.050  Sum_probs=341.6

Q ss_pred             HHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 002729           19 LEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP   98 (887)
Q Consensus        19 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p   98 (887)
                      +..++. -...|.++....-...+....|+.++|++.+.++...+|....++..+|.++...|++++|+..|+++++.+|
T Consensus         2 ~~~~~~-~~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P   80 (765)
T PRK10049          2 LSWLRQ-ALKSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP   80 (765)
T ss_pred             chhhhh-hhccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            345555 4456667777777778888889999999888888887888888888889999999999999999999988888


Q ss_pred             CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHH
Q 002729           99 NFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGL  178 (887)
Q Consensus        99 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  178 (887)
                      +++.++..++.++...|++++|+..++++++..|++.. +..+|.++...|++++|+..++++++..|++..++..++.+
T Consensus        81 ~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~  159 (765)
T PRK10049         81 QNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQA  159 (765)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            88888888888888899999999999999888888888 88888888889999999999999999999888888888888


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHH-----HHHHHHHHHH-----HcCCh---HHHHHHHHHHHhh---CCChh-----
Q 002729          179 FMESGDLNRALQYYKEAVKLKPTFPD-----AYLNLGNVYK-----ALGMP---QEAIMCYQRAVQT---RPNAI-----  237 (887)
Q Consensus       179 ~~~~g~~~~A~~~~~~~l~~~~~~~~-----~~~~l~~~~~-----~~g~~---~~A~~~~~~~~~~---~p~~~-----  237 (887)
                      +...+..++|++.++++.. .|+...     ....+..+..     ..+++   ++|++.++++++.   +|+..     
T Consensus       160 l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~  238 (765)
T PRK10049        160 LRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQR  238 (765)
T ss_pred             HHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHH
Confidence            8888888888888887665 443211     1122222222     12234   6788888888865   33311     


Q ss_pred             HHhhHHHHHHHcCChHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----hHHHHhHHH
Q 002729          238 AFGNLASTYYERGQADMAILYYKQAIGCDPRF-LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH----PQALTNLGN  312 (887)
Q Consensus       238 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~  312 (887)
                      +.......+...|++++|+..|+++++..+.. ..+...++.++...|++++|+..|+++++..|.+    ......++.
T Consensus       239 a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~  318 (765)
T PRK10049        239 ARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFY  318 (765)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHH
Confidence            11221234467789999999999988775432 2233446889999999999999999988877765    345667777


Q ss_pred             HHHHcCChhHHHHHHHHHHhccCCC---------------chhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 002729          313 IYMEWNMLPAAASYYKATLAVTTGL---------------SAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVN  377 (887)
Q Consensus       313 ~~~~~g~~~~A~~~~~~~~~~~~~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  377 (887)
                      ++.+.|++++|+..++++....|..               ..++..++.++...|++++|++.+++++...|.+..++..
T Consensus       319 a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~  398 (765)
T PRK10049        319 SLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRID  398 (765)
T ss_pred             HHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            8889999999999999998887632               2356788999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHH
Q 002729          378 RGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEAT  443 (887)
Q Consensus       378 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  443 (887)
                      +|.++...|++++|++.++++++.+|++..+++.+|.++...|++++|...++++++..|+++.+.
T Consensus       399 lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~  464 (765)
T PRK10049        399 YASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ  464 (765)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999998654

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=100.00  E-value=1.4e-29  Score=292.13  Aligned_cols=361  Identities=13%  Similarity=0.039  Sum_probs=294.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002729           67 AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMK  146 (887)
Q Consensus        67 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~  146 (887)
                      .......+..+.+.|++++|...++.++...|+++.++..++.+....|++++|+..++++++.+|+++.++..+|.++.
T Consensus        42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~  121 (656)
T PRK15174         42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL  121 (656)
T ss_pred             ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            34455566677778888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 002729          147 AQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCY  226 (887)
Q Consensus       147 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  226 (887)
                      ..|++++|+..|+++++.+|++..++..++.++...|++++|+..+++++...|+++..+..++ .+...|++++|+..+
T Consensus       122 ~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~  200 (656)
T PRK15174        122 KSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLA  200 (656)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHH
Confidence            8888888888888888888888888888888888888888888888888888887777766554 367778888888888


Q ss_pred             HHHHhhCCC--hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhcC
Q 002729          227 QRAVQTRPN--AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDE----AIQCYNQCLSLQ  300 (887)
Q Consensus       227 ~~~~~~~p~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~  300 (887)
                      +++++..|.  ......++.++...|++++|+..+++++..+|++..++..+|.++...|++++    |+..++++++.+
T Consensus       201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~  280 (656)
T PRK15174        201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN  280 (656)
T ss_pred             HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence            888776542  33445567778888888888888888888888888888889999998888885    788899999999


Q ss_pred             CCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 002729          301 PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGN  380 (887)
Q Consensus       301 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  380 (887)
                      |++..++..+|.++...|++++|+..+++++..+|+++.++..++.++.+.|++++|+..|+++++.+|++...+..+|.
T Consensus       281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~  360 (656)
T PRK15174        281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAA  360 (656)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            99888899999999999999999999999999899888888889999999999999999999999888888877777888


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCh
Q 002729          381 TYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFP  440 (887)
Q Consensus       381 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  440 (887)
                      ++...|++++|+..|+++++..|++.            ...+++|...|.++++..+...
T Consensus       361 al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~~~~~~~~~~~~~  408 (656)
T PRK15174        361 ALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLLALDGQISAVNLPP  408 (656)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHHHHHHHHHhcCCcc
Confidence            88999999999999999999888764            3455677777777777655544

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=100.00  E-value=4.1e-29  Score=293.14  Aligned_cols=457  Identities=14%  Similarity=0.031  Sum_probs=375.6

Q ss_pred             hhHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHH--------
Q 002729            2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNM--------   73 (887)
Q Consensus         2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l--------   73 (887)
                      ++.++..|+..|++++|+..++++++.+|.+...+..++.+    +++++|+..++++++.+|.+.+++..+        
T Consensus        81 ~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~  156 (987)
T PRK09782         81 TLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQN  156 (987)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccc
Confidence            57889999999999999999999999999888887777655    888999999999999888765444332        


Q ss_pred             --------------------------------HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-cCChHHH
Q 002729           74 --------------------------------ANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMR-KGRLNEA  120 (887)
Q Consensus        74 --------------------------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A  120 (887)
                                                      ..+|.++|++++|+..+.++.+..|.+......++.+|.. +++ +++
T Consensus       157 ~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a  235 (987)
T PRK09782        157 ALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRL  235 (987)
T ss_pred             hhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHH
Confidence                                            5566778999999999999999999999999999999998 477 888


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh------------------------------------
Q 002729          121 AQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI------------------------------------  164 (887)
Q Consensus       121 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------------------------------  164 (887)
                      ..+++..++   .++.++..++..+.+.|+.++|.+.+++.-..                                    
T Consensus       236 ~al~~~~lk---~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~  312 (987)
T PRK09782        236 LALQSQGIF---TDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNR  312 (987)
T ss_pred             HHHhchhcc---cCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHH
Confidence            888665333   44555555555555555555555444221100                                    


Q ss_pred             -----------------------------------------------------------CCChHHHHHHHHHHHHHcCCH
Q 002729          165 -----------------------------------------------------------QPTFAIAWSNLAGLFMESGDL  185 (887)
Q Consensus       165 -----------------------------------------------------------~p~~~~~~~~la~~~~~~g~~  185 (887)
                                                                                 .|.+...+..++....+.|+.
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~  392 (987)
T PRK09782        313 QYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQS  392 (987)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccH
Confidence                                                                       011111222222222223333


Q ss_pred             HHHH-----------------------------------------------------------------HHHHHHHhhCC
Q 002729          186 NRAL-----------------------------------------------------------------QYYKEAVKLKP  200 (887)
Q Consensus       186 ~~A~-----------------------------------------------------------------~~~~~~l~~~~  200 (887)
                      ++|.                                                                 ..+.+++...|
T Consensus       393 ~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p  472 (987)
T PRK09782        393 REAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMS  472 (987)
T ss_pred             HHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCC
Confidence            3332                                                                 22333344467


Q ss_pred             C--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 002729          201 T--FPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGN  278 (887)
Q Consensus       201 ~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~  278 (887)
                      .  ++.++..+|.++.. ++.++|+..+.+++...|+......++..+...|++++|+..++++....|... .+..+|.
T Consensus       473 ~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~-a~~~la~  550 (987)
T PRK09782        473 PSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNE-DLLAAAN  550 (987)
T ss_pred             CCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcH-HHHHHHH
Confidence            7  89999999999998 899999999999999999866666778888899999999999999887766654 6788999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHH
Q 002729          279 ALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAI  358 (887)
Q Consensus       279 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  358 (887)
                      ++.+.|++++|..+++++++..|++...+..++......|++++|+..|+++++.+|+ ...+..+|.++.+.|++++|+
T Consensus       551 all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~  629 (987)
T PRK09782        551 TAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAV  629 (987)
T ss_pred             HHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHH
Confidence            9999999999999999999999998888877777777889999999999999999996 899999999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 002729          359 SCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD  438 (887)
Q Consensus       359 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  438 (887)
                      ..|+++++++|+++.++.++|.++...|++++|+..|+++++.+|+++.+++++|.++...|++++|+..|++++++.|+
T Consensus       630 ~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~  709 (987)
T PRK09782        630 SDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN  709 (987)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHhhhcCChhhHhHHHHHHHHH
Q 002729          439 FPEATCNLLHTLQCVCSWEDRDRMFSEVEGI  469 (887)
Q Consensus       439 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  469 (887)
                      +..+............++..+.+.+.+...+
T Consensus       710 ~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~  740 (987)
T PRK09782        710 QALITPLTPEQNQQRFNFRRLHEEVGRRWTF  740 (987)
T ss_pred             CchhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999998888888888888888777654

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=100.00  E-value=1.8e-29  Score=297.76  Aligned_cols=401  Identities=18%  Similarity=0.115  Sum_probs=349.0

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Q 002729            6 AHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDL   85 (887)
Q Consensus         6 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~   85 (887)
                      ...+...|++++|++.+.++...+|....++..+|.++...|++++|+..++++++.+|.++.++..++.++...|++++
T Consensus        22 ~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~e  101 (765)
T PRK10049         22 LQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDE  101 (765)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence            45678899999999999999888888889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 002729           86 AIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ  165 (887)
Q Consensus        86 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  165 (887)
                      |+..++++++..|++.. +..++.++...|++++|+..++++++..|++..++..++.++...+..++|+..++++.. .
T Consensus       102 A~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~  179 (765)
T PRK10049        102 ALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-T  179 (765)
T ss_pred             HHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-C
Confidence            99999999999999999 999999999999999999999999999999999999999999999999999999987776 5


Q ss_pred             CChH-----HHHHHHHHHHH-----HcCCH---HHHHHHHHHHHhhCCCCHHH-------HHHHHHHHHHcCChHHHHHH
Q 002729          166 PTFA-----IAWSNLAGLFM-----ESGDL---NRALQYYKEAVKLKPTFPDA-------YLNLGNVYKALGMPQEAIMC  225 (887)
Q Consensus       166 p~~~-----~~~~~la~~~~-----~~g~~---~~A~~~~~~~l~~~~~~~~~-------~~~l~~~~~~~g~~~~A~~~  225 (887)
                      |...     .....+..+..     ..+++   ++|++.++++++..|.++..       .......+...|++++|+..
T Consensus       180 p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~  259 (765)
T PRK10049        180 PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISE  259 (765)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            4421     11222223322     22334   78999999999765444332       22212344677999999999


Q ss_pred             HHHHHhhCCC--hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002729          226 YQRAVQTRPN--AIAFGNLASTYYERGQADMAILYYKQAIGCDPRF----LEAYNNLGNALKDVGRVDEAIQCYNQCLSL  299 (887)
Q Consensus       226 ~~~~~~~~p~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~  299 (887)
                      |+++++..+.  ......++.++...|++++|+..|++++..+|..    ......++.++.+.|++++|++.++++.+.
T Consensus       260 ~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~  339 (765)
T PRK10049        260 YQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINN  339 (765)
T ss_pred             HHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc
Confidence            9999987643  2334446899999999999999999999887765    456777888899999999999999999988


Q ss_pred             CCCC---------------hHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHH
Q 002729          300 QPSH---------------PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEV  364 (887)
Q Consensus       300 ~p~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  364 (887)
                      .|..               ..++..++.++...|++++|++.+++++...|.+..++..+|.++...|++++|++.++++
T Consensus       340 ~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~a  419 (765)
T PRK10049        340 SPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKA  419 (765)
T ss_pred             CCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            7632               3467789999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 002729          365 LRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEA  408 (887)
Q Consensus       365 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  408 (887)
                      ++++|++..+++.+|.++...|++++|...++++++..|+++.+
T Consensus       420 l~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~  463 (765)
T PRK10049        420 EVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV  463 (765)
T ss_pred             HhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence            99999999999999999999999999999999999999998843

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=100.00  E-value=1.5e-29  Score=285.64  Aligned_cols=524  Identities=12%  Similarity=0.072  Sum_probs=338.1

Q ss_pred             HHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHh
Q 002729          287 DEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLR  366 (887)
Q Consensus       287 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  366 (887)
                      .+++.-+.......|.+++++..||.+....|.+++|...++.+++..|++..++..++.++.+.+++++|+..+++++.
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~  148 (694)
T PRK15179         69 AAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS  148 (694)
T ss_pred             HhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence            33333344444557888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHHHHH
Q 002729          367 IDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL  446 (887)
Q Consensus       367 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  446 (887)
                      .+|+++..++.+|.++.++|++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++...+-...+.++
T Consensus       149 ~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~  228 (694)
T PRK15179        149 GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRR  228 (694)
T ss_pred             cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999876666665555


Q ss_pred             HHHhhhcCChhhHhHHHHHHHHHHHHHhccCCCCCCCCcccccCcCCHHHHHHHHHHHHhhhhhhhhccCCCCCCCCCCC
Q 002729          447 LHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPI  526 (887)
Q Consensus       447 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  526 (887)
                      +.-+...             ..++++.-..+..-+. +...+    .......   .|..       +- .-.+.     
T Consensus       229 ~~~~~~~-------------~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~---~~~~-------~~-~~~~~-----  274 (694)
T PRK15179        229 LVDLNAD-------------LAALRRLGVEGDGRDV-PVSIL----VLEKMLQ---EIGR-------RR-NAEYD-----  274 (694)
T ss_pred             HHHHHHH-------------HHHHHHcCcccccCCC-ceeee----eHHHHHH---HHhh-------cC-ccccc-----
Confidence            4433221             1122222111111111 11111    1111000   0100       00 00011     


Q ss_pred             ccccCCCcccc-eeeeecCCCCCChhHHhhhHHhhcCCCCC--------------cEEEEEecCCCCC-hHHHHHHHhhc
Q 002729          527 PIRLDGGLRRL-RVGYVSSDFGNHPLSHLMGSVFGMHNKEN--------------VEVFCYALSPNDG-TEWRQRTQSEA  590 (887)
Q Consensus       527 p~~~~~~~~~l-riGyvs~d~~~h~~~~~~~~~~~~~~~~~--------------~e~~~~~~~~~~~-~~~~~~~~~~~  590 (887)
                          ..|.++. ||-+|-..+..-=.-..+..+..++++.+              .+|+|.+....++ +.+...++..-
T Consensus       275 ----~~~~~~~~rIl~vi~sl~~GGAEr~~~~La~~l~~~~~~~~~~~g~g~~~~~~V~~~~~~~~~g~~~~~~~L~~~G  350 (694)
T PRK15179        275 ----AGPESFVGPVLMINGSLGAGGAERQFVNTAVALQSAIQQGQSIAGYGVLGPVQVVCRSLRSREGADFFAATLADAG  350 (694)
T ss_pred             ----CCCCCCcceEEEEeCCCCCCcHHHHHHHHHHHHHhcccCcccccCccCCCCcEEEEEecccccCcchHHHHHHhCC
Confidence                1234566 78888766643222245556666666654              3677765432221 23333343321


Q ss_pred             C--ceEECCC--------------------C------CHHHHHHHHHhCCCeEEEecCCcCCCCchhhh---hc--CCCc
Q 002729          591 E--HFVDVSA--------------------M------SSDMIAKLINEDKIQILINLNGYTKGARNEIF---AM--QPAP  637 (887)
Q Consensus       591 ~--~~~~~~~--------------------~------~~~~~~~~i~~~~~dil~~~~~~~~~~~~~~~---~~--r~ap  637 (887)
                      .  .+.....                    +      .-..+.+.|++.++||++     ++..+..++   +.  ...|
T Consensus       351 v~v~~l~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~~lk~~kpDIVH-----~h~~~a~~lg~lAa~~~gvP  425 (694)
T PRK15179        351 IPVSVYSDMQAWGGCEFSSLLAPYREYLRFLPKQIIEGTTKLTDVMRSSVPSVVH-----IWQDGSIFACALAALLAGVP  425 (694)
T ss_pred             CeEEEeccCCccCcccccccchhhHHHhhhcchhHHHHHHHHHHHHHHcCCcEEE-----EeCCcHHHHHHHHHHHcCCC
Confidence            1  1111110                    0      025678899999999995     433333222   22  2357


Q ss_pred             eEE-eccccCCCCCCC--------------cc--cEEEecCccCCC---CcCCCCccceeecCCccccCCCccccccCCC
Q 002729          638 IQV-SYMGFPGTTGAS--------------YI--DYLVTDEFVSPL---RYAHIYSEKLVHVPHCYFVNDYKQKNMDVLD  697 (887)
Q Consensus       638 vq~-~~~g~~~t~g~~--------------~~--d~~~~d~~~~p~---~~~~~~~e~~~~lp~~~~~~~~~~~~~~~~~  697 (887)
                      +.+ ++-+.|......              .+  +.+++.....-.   ..-....+++..+|++.-...+.      ++
T Consensus       426 vIv~t~h~~~~~~~~~~~~~~~~~l~~~l~~~~~~i~Vs~S~~~~~~l~~~~g~~~~kI~VI~NGVd~~~f~------~~  499 (694)
T PRK15179        426 RIVLSVRTMPPVDRPDRYRVEYDIIYSELLKMRGVALSSNSQFAAHRYADWLGVDERRIPVVYNGLAPLKSV------QD  499 (694)
T ss_pred             EEEEEeCCCccccchhHHHHHHHHHHHHHHhcCCeEEEeCcHHHHHHHHHHcCCChhHEEEECCCcCHHhcC------CC
Confidence            655 333332211100              01  122322110000   00112346777788764321111      00


Q ss_pred             CCCCCCCC--CCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEE
Q 002729          698 PNCQPKRS--DYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQII  773 (887)
Q Consensus       698 ~~~~~~r~--~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~  773 (887)
                      +.....+.  ..+++++.+++++++|+  .|..+.++++++++++..|+.+|+|+|.++. ++.+++.+++.|+ .++|.
T Consensus       500 ~~~~~~~~~~~~~~~~~~~vIg~VGRL~~~KG~~~LI~A~a~l~~~~p~~~LvIvG~G~~-~~~L~~l~~~lgL-~~~V~  577 (694)
T PRK15179        500 DACTAMMAQFDARTSDARFTVGTVMRVDDNKRPFLWVEAAQRFAASHPKVRFIMVGGGPL-LESVREFAQRLGM-GERIL  577 (694)
T ss_pred             chhhHHHHhhccccCCCCeEEEEEEeCCccCCHHHHHHHHHHHHHHCcCeEEEEEccCcc-hHHHHHHHHHcCC-CCcEE
Confidence            11111111  22356677888888876  5999999999999999999999999998875 7789999999999 59999


Q ss_pred             EcCCCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCccccC--C--HHH
Q 002729          774 FTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVN--S--MKE  848 (887)
Q Consensus       774 ~~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~~--~--~~~  848 (887)
                      |.|..+  +...+|+.+|+++-|+.++| |++++|||+||+|||+-......+-+..      |.++ +++.  |  .++
T Consensus       578 flG~~~--dv~~ll~aaDv~VlpS~~Egfp~vlLEAMA~G~PVVat~~gG~~EiV~d------g~~G-lLv~~~d~~~~~  648 (694)
T PRK15179        578 FTGLSR--RVGYWLTQFNAFLLLSRFEGLPNVLIEAQFSGVPVVTTLAGGAGEAVQE------GVTG-LTLPADTVTAPD  648 (694)
T ss_pred             EcCCcc--hHHHHHHhcCEEEeccccccchHHHHHHHHcCCeEEEECCCChHHHccC------CCCE-EEeCCCCCChHH
Confidence            999864  56778999999999988888 9999999999999998655444443322      6666 5553  3  245


Q ss_pred             HHHHHHHHhc----CHHHHHHHHHHH
Q 002729          849 YEERAVSLAL----DRQKLQALTNKL  870 (887)
Q Consensus       849 y~~~a~~l~~----d~~~~~~~~~~~  870 (887)
                      +.+...++..    |++..++.|+..
T Consensus       649 La~aL~~ll~~l~~~~~l~~~ar~~a  674 (694)
T PRK15179        649 VAEALARIHDMCAADPGIARKAADWA  674 (694)
T ss_pred             HHHHHHHHHhChhccHHHHHHHHHHH
Confidence            5555555444    555444444444

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=100.00  E-value=1.8e-29  Score=291.03  Aligned_cols=362  Identities=13%  Similarity=0.047  Sum_probs=326.7

Q ss_pred             HHcCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 002729           78 KEKGDIDLAIRYYLVAIEL---RPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEA  154 (887)
Q Consensus        78 ~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A  154 (887)
                      .++.+++.-.-++....+.   ..++..-....+..+.+.|++++|+..++..+...|.+..++..++.+....|++++|
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A   95 (656)
T PRK15174         16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAV   95 (656)
T ss_pred             hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHH
Confidence            3444554444444444332   2233445566778888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 002729          155 YSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP  234 (887)
Q Consensus       155 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p  234 (887)
                      +..|+++++.+|+++.++..++.++...|++++|+..++++++.+|+++.++..++.++...|++++|+..++++....|
T Consensus        96 ~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P  175 (656)
T PRK15174         96 LQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP  175 (656)
T ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             C-hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHH
Q 002729          235 N-AIAFGNLASTYYERGQADMAILYYKQAIGCDP-RFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGN  312 (887)
Q Consensus       235 ~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  312 (887)
                      + ...+..+ ..+...|++++|+..+++++..+| ........++.++...|++++|+..++++++..|+++.++..+|.
T Consensus       176 ~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~  254 (656)
T PRK15174        176 PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGL  254 (656)
T ss_pred             CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            7 4444444 458899999999999999998875 334455667889999999999999999999999999999999999


Q ss_pred             HHHHcCChhH----HHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 002729          313 IYMEWNMLPA----AASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRV  388 (887)
Q Consensus       313 ~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~  388 (887)
                      ++...|++++    |+..|+++++.+|++..++..+|.++...|++++|+..++++++++|+++.++..+|.++.+.|++
T Consensus       255 ~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~  334 (656)
T PRK15174        255 AYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQY  334 (656)
T ss_pred             HHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence            9999999996    899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCh
Q 002729          389 TDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFP  440 (887)
Q Consensus       389 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  440 (887)
                      ++|+..|+++++.+|++...+..++.++...|++++|+..|+++++..|++.
T Consensus       335 ~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~  386 (656)
T PRK15174        335 TAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL  386 (656)
T ss_pred             HHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence            9999999999999999988888889999999999999999999999999875

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.98  E-value=1.4e-27  Score=282.26  Aligned_cols=455  Identities=13%  Similarity=0.080  Sum_probs=321.5

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 002729           33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEP--RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASA  110 (887)
Q Consensus        33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  110 (887)
                      ...+..+-..+.+.|++++|+++|+++.+.+.  .+...+..+...+.+.|..++|...|+.+..  | +...|..+...
T Consensus       370 ~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a  446 (1060)
T PLN03218        370 SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMSV  446 (1060)
T ss_pred             chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHHH
Confidence            34444445556677888888888887776543  2344455566667777788888877776654  3 36677777777


Q ss_pred             HHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-ChHHHHHHHHHHHHHcCCHHHH
Q 002729          111 YMRKGRLNEAAQCCRQALALNP-LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP-TFAIAWSNLAGLFMESGDLNRA  188 (887)
Q Consensus       111 ~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A  188 (887)
                      +.+.|++++|.++++++.+.+. .+...+..+...|.+.|+.++|.++|+++.+... .+..+|..+...|.+.|++++|
T Consensus       447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA  526 (1060)
T PLN03218        447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA  526 (1060)
T ss_pred             HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence            8888888888888887776653 3566777777888888888888888887776542 3567777888888888888888


Q ss_pred             HHHHHHHHhhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh----hCCChhHHhhHHHHHHHcCChHHHHHHHHHHH
Q 002729          189 LQYYKEAVKLK-PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ----TRPNAIAFGNLASTYYERGQADMAILYYKQAI  263 (887)
Q Consensus       189 ~~~~~~~l~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~~la~~~~~~g~~~~A~~~~~~~l  263 (887)
                      .++|+++.+.. ..+..+|..+...+.+.|++++|.++|+++..    ..|+..+|..+...|.+.|++++|.++|+++.
T Consensus       527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~  606 (1060)
T PLN03218        527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH  606 (1060)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            88888776543 12356777788888888888888888887765    35667777778888888888888888888777


Q ss_pred             hcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcc-CCCchh
Q 002729          264 GCD-PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ-PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT-TGLSAP  340 (887)
Q Consensus       264 ~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~  340 (887)
                      +.+ +.+..+|..+...|.+.|++++|.++|+++.+.. ..+...+..+...|.+.|++++|.++++++.+.. +.+..+
T Consensus       607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t  686 (1060)
T PLN03218        607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS  686 (1060)
T ss_pred             HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence            554 3345577778888888888888888888777652 2335677777778888888888888888877664 345667


Q ss_pred             HhhHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHh
Q 002729          341 FNNLAVIYKQQGNYADAISCYNEVLRID-PLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR-PTMAEAHANLASAYKD  418 (887)
Q Consensus       341 ~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~  418 (887)
                      |+.++..|.+.|++++|.++|+++.+.. ..+...|..+...|.+.|++++|.+.|+++.+.. ..+..++..+...+.+
T Consensus       687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k  766 (1060)
T PLN03218        687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER  766 (1060)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence            7788888888888888888888776542 2345677778888888888888888888776543 2335677777778888


Q ss_pred             CCCHHHHHHHHHHHHHcCCCChHHHHHHHHHhhhcCChhhHh------------------HHHHHHHHHHHHHhccCCCC
Q 002729          419 SGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRD------------------RMFSEVEGIIRRQVNMSVLP  480 (887)
Q Consensus       419 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~a~------------------~~~~~~~~~~~~~~~~~~~p  480 (887)
                      .|++++|.++++++.+.+..+....++.+..++ .+.++++.                  ....++..++++|+..|+.|
T Consensus       767 ~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc-~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~P  845 (1060)
T PLN03218        767 KDDADVGLDLLSQAKEDGIKPNLVMCRCITGLC-LRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLP  845 (1060)
T ss_pred             CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCC
Confidence            888888888888887776554444443332221 11122221                  22356788999999999999


Q ss_pred             CCCCcccccCc
Q 002729          481 SVQPFHAIAYP  491 (887)
Q Consensus       481 ~~~~~~~l~~~  491 (887)
                      +..+|..++..
T Consensus       846 d~~T~~~vL~c  856 (1060)
T PLN03218        846 TMEVLSQVLGC  856 (1060)
T ss_pred             CHHHHHHHHHH
Confidence            99999988843

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.98  E-value=1.6e-28  Score=289.27  Aligned_cols=455  Identities=13%  Similarity=0.071  Sum_probs=395.1

Q ss_pred             hHHHHHHHhcCCHHHHHHHHHHHHhhCC--CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHH
Q 002729            3 MALAHQMYKSGSYKQALEHSNSVYERNP--LRTDNLLLLGAIYYQLHDYDMCIARNEEALRLE-PRFAECYGNMANAWKE   79 (887)
Q Consensus         3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~   79 (887)
                      ..+...+.+.|++++|+++|+.+....+  .+...+..+..++.+.++++.|.+++..+.+.. ..+..++..+...|.+
T Consensus        91 ~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k  170 (697)
T PLN03081         91 CSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVK  170 (697)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhc
Confidence            3456678899999999999999976543  367888899999999999999999999998753 2367889999999999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHH
Q 002729           80 KGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNP-LLVDAHSNLGNLMKAQGLVQEAYSCY  158 (887)
Q Consensus        80 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~  158 (887)
                      .|++++|.+.|+++.+  | +..+|+.+...|.+.|++++|+++|+++.+.+. .+..++..+...+...|..+.+.+++
T Consensus       171 ~g~~~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~  247 (697)
T PLN03081        171 CGMLIDARRLFDEMPE--R-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLH  247 (697)
T ss_pred             CCCHHHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHH
Confidence            9999999999999864  3 467899999999999999999999999988753 34567788888889999999999998


Q ss_pred             HHHHhhC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCC
Q 002729          159 LEALRIQ-PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT--RPN  235 (887)
Q Consensus       159 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~  235 (887)
                      ..+.+.. ..+..+++.+...|.+.|++++|.++|+++.   +.+..+|+.+...|.+.|+.++|+++|+++.+.  .|+
T Consensus       248 ~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd  324 (697)
T PLN03081        248 CCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID  324 (697)
T ss_pred             HHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence            8887753 4467788999999999999999999999874   356789999999999999999999999999764  677


Q ss_pred             hhHHhhHHHHHHHcCChHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHH
Q 002729          236 AIAFGNLASTYYERGQADMAILYYKQAIGCD-PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIY  314 (887)
Q Consensus       236 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  314 (887)
                      ..++..+...+.+.|++++|.+.+..+.+.. +.+..++..+...|.+.|++++|.+.|+++.+   .+..+|+.+...|
T Consensus       325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y  401 (697)
T PLN03081        325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGY  401 (697)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHH
Confidence            8899999999999999999999999998654 44566899999999999999999999998764   3577899999999


Q ss_pred             HHcCChhHHHHHHHHHHhcc-CCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCCHHHH
Q 002729          315 MEWNMLPAAASYYKATLAVT-TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP--LAADGLVNRGNTYKEIGRVTDA  391 (887)
Q Consensus       315 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A  391 (887)
                      .+.|+.++|+++|+++.+.. ..+..++..+...+.+.|+.++|.++|+++.+..+  .+...|..+...|.+.|++++|
T Consensus       402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA  481 (697)
T PLN03081        402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA  481 (697)
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence            99999999999999998764 44677899999999999999999999999987533  3456788899999999999999


Q ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHhhhcCChhhHhHHHHHHHH
Q 002729          392 IQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEG  468 (887)
Q Consensus       392 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  468 (887)
                      .+.++++ ...| +..+|..+..++...|+++.|...+++++++.|++...+..++..|...|+|++|.+++++|.+
T Consensus       482 ~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~  556 (697)
T PLN03081        482 YAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR  556 (697)
T ss_pred             HHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            9998764 2334 4678999999999999999999999999999999999999999999999999999888877664

>PLN03077 Protein ECB2; Provisional

Probab=99.98  E-value=7.6e-29  Score=299.31  Aligned_cols=483  Identities=16%  Similarity=0.132  Sum_probs=339.3

Q ss_pred             hHHHHHHHhcCCHHHHHHHHHHHHhhC-CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHc
Q 002729            3 MALAHQMYKSGSYKQALEHSNSVYERN-PLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR-FAECYGNMANAWKEK   80 (887)
Q Consensus         3 ~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~   80 (887)
                      ..+...+.+.|++++|+.+|+++.+.. +.+...+..+...+...+..+.|...+..+++..+. +......+...|.+.
T Consensus        55 n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~  134 (857)
T PLN03077         55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRF  134 (857)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhC
Confidence            345678889999999999999987753 335556666666666777777777777777665543 344555666666666


Q ss_pred             CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CC-------------------------
Q 002729           81 GDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALN--PL-------------------------  133 (887)
Q Consensus        81 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~-------------------------  133 (887)
                      |+.+.|.+.|+++.+   .+..+|..+...|.+.|++++|+..|+++...+  |+                         
T Consensus       135 g~~~~A~~~f~~m~~---~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~  211 (857)
T PLN03077        135 GELVHAWYVFGKMPE---RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHA  211 (857)
T ss_pred             CChHHHHHHHhcCCC---CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHH
Confidence            777777666666543   234566666666666677777776666665422  22                         


Q ss_pred             ---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC-
Q 002729          134 ---------LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK--PT-  201 (887)
Q Consensus       134 ---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--~~-  201 (887)
                               +...+..+...|.+.|++++|...|+++..   .+..+|+.+...|.+.|++++|+++|.++.+..  |+ 
T Consensus       212 ~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~  288 (857)
T PLN03077        212 HVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR---RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDL  288 (857)
T ss_pred             HHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC---CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh
Confidence                     223445566666777777777777766532   344566777777777777777777777765532  22 


Q ss_pred             ---------------------------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHhhHHHHHHH
Q 002729          202 ---------------------------------FPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYE  248 (887)
Q Consensus       202 ---------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~la~~~~~  248 (887)
                                                       +..+++.+...|.+.|++++|.++|+++.  .|+..+|+.+...|.+
T Consensus       289 ~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~--~~d~~s~n~li~~~~~  366 (857)
T PLN03077        289 MTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME--TKDAVSWTAMISGYEK  366 (857)
T ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCeeeHHHHHHHHHh
Confidence                                             34456666667777777777777776653  3455667777777777


Q ss_pred             cCChHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChHHHHhHHHHHHHcCChhHHHH
Q 002729          249 RGQADMAILYYKQAIG--CDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP-SHPQALTNLGNIYMEWNMLPAAAS  325 (887)
Q Consensus       249 ~g~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~  325 (887)
                      .|++++|+++|+++.+  ..|+.. ++..+...+.+.|++++|.++++.+.+... .+..++..+...|.+.|++++|.+
T Consensus       367 ~g~~~~A~~lf~~M~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~  445 (857)
T PLN03077        367 NGLPDKALETYALMEQDNVSPDEI-TIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE  445 (857)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCCce-eHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHH
Confidence            7777777777776653  335443 556666666777777777777777666532 345667777888888888888888


Q ss_pred             HHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC
Q 002729          326 YYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR-PT  404 (887)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~  404 (887)
                      .|+++.+   .+..+|+.+...|.+.|+.++|+.+|+++....+.+...+..+..++.+.|+.+.+.+.+..+++.. ..
T Consensus       446 vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~  522 (857)
T PLN03077        446 VFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGF  522 (857)
T ss_pred             HHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCc
Confidence            8877643   3566788888888888888888888888876555566677777777888888888888888777764 23


Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHhhhcCChhhHhHHHHHHHHHHHHHhccCCCCCCCC
Q 002729          405 MAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQP  484 (887)
Q Consensus       405 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~  484 (887)
                      +..+...|..+|.+.|++++|.+.|+++    +.+..+|+.++..|...|+.++|.++|++       |...|+.||..+
T Consensus       523 ~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~-------M~~~g~~Pd~~T  591 (857)
T PLN03077        523 DGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNR-------MVESGVNPDEVT  591 (857)
T ss_pred             cceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHH-------HHHcCCCCCccc
Confidence            4556778889999999999999999886    56788999999999999998777666655       445789999999


Q ss_pred             cccccCcCCHHHHHHHHHHHHhhh
Q 002729          485 FHAIAYPIDPMLALEISRKYASHC  508 (887)
Q Consensus       485 ~~~l~~~~~~~~~~~~~~~~~~~~  508 (887)
                      |..++.+|++.|.++++.++-+..
T Consensus       592 ~~~ll~a~~~~g~v~ea~~~f~~M  615 (857)
T PLN03077        592 FISLLCACSRSGMVTQGLEYFHSM  615 (857)
T ss_pred             HHHHHHHHhhcChHHHHHHHHHHH
Confidence            999999999999999998876543

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.97  E-value=2.1e-26  Score=272.31  Aligned_cols=480  Identities=11%  Similarity=0.054  Sum_probs=392.8

Q ss_pred             hHHHHHHHhcCCHHHHHHHHHHHHhhCC--CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 002729            3 MALAHQMYKSGSYKQALEHSNSVYERNP--LRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEK   80 (887)
Q Consensus         3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~   80 (887)
                      +.+-..+.+.|++++|+++|+++.+.+.  .+...+..+...+.+.|..++|..+++.+..   .+..+|..+...+.+.
T Consensus       374 ~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~---pd~~Tyn~LL~a~~k~  450 (1060)
T PLN03218        374 IDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN---PTLSTFNMLMSVCASS  450 (1060)
T ss_pred             HHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC---CCHHHHHHHHHHHHhC
Confidence            3445677789999999999999987763  2344455566778889999999999988765   4678899999999999


Q ss_pred             CCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHH
Q 002729           81 GDIDLAIRYYLVAIELRP-NFADAWSNLASAYMRKGRLNEAAQCCRQALALNP-LLVDAHSNLGNLMKAQGLVQEAYSCY  158 (887)
Q Consensus        81 g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~  158 (887)
                      |++++|.++|+++.+... .+...|..+...|.+.|+.++|.++|+++.+.+. .+..+|..+...|.+.|++++|.+.|
T Consensus       451 g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf  530 (1060)
T PLN03218        451 QDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY  530 (1060)
T ss_pred             cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            999999999999998753 3578999999999999999999999999998763 37889999999999999999999999


Q ss_pred             HHHHhhC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-
Q 002729          159 LEALRIQ-PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK---PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR-  233 (887)
Q Consensus       159 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-  233 (887)
                      +++.+.. ..+..+|+.+...|.+.|++++|.++++++....   ..+..++..+...|.+.|++++|.++|+++.+.. 
T Consensus       531 ~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi  610 (1060)
T PLN03218        531 GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI  610 (1060)
T ss_pred             HHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence            9997653 3457889999999999999999999999997631   2246789999999999999999999999999864 


Q ss_pred             -CChhHHhhHHHHHHHcCChHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHh
Q 002729          234 -PNAIAFGNLASTYYERGQADMAILYYKQAIGC--DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ-PSHPQALTN  309 (887)
Q Consensus       234 -p~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~  309 (887)
                       |+...|..+...|.+.|++++|.++|+++.+.  .|+ ..+|..+...+.+.|++++|.++++++.+.. +.+..++..
T Consensus       611 ~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tyns  689 (1060)
T PLN03218        611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSS  689 (1060)
T ss_pred             CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence             55889999999999999999999999999854  565 4589999999999999999999999999874 456789999


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHhcc-CCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCC
Q 002729          310 LGNIYMEWNMLPAAASYYKATLAVT-TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRID-PLAADGLVNRGNTYKEIGR  387 (887)
Q Consensus       310 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~  387 (887)
                      +...|.+.|++++|.++|+++.... ..+...|+.++..|.+.|++++|+++|+++.+.. ..+...+..+...+.+.|+
T Consensus       690 LI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~  769 (1060)
T PLN03218        690 LMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDD  769 (1060)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence            9999999999999999999987653 4467889999999999999999999999998764 3456788888899999999


Q ss_pred             HHHHHHHHHHHHhcCC-CcHHHHHHHHHHHH----hC-------------------CCHHHHHHHHHHHHHcCCCCh-HH
Q 002729          388 VTDAIQDYIRAITIRP-TMAEAHANLASAYK----DS-------------------GHVEAAIKSYKQALLLRPDFP-EA  442 (887)
Q Consensus       388 ~~~A~~~~~~al~~~p-~~~~~~~~la~~~~----~~-------------------g~~~~A~~~~~~al~~~p~~~-~~  442 (887)
                      +++|.+++.++.+... .+..++..+..++.    +.                   +..++|..+|+++++.+-.+. ..
T Consensus       770 le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T  849 (1060)
T PLN03218        770 ADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEV  849 (1060)
T ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHH
Confidence            9999999999998642 23445555443322    11                   234679999999999875533 44


Q ss_pred             HHHHHHHhhhcCChhhHhHHHHHHHHHHHHHhccCCCCCCCCcccccCcCC
Q 002729          443 TCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPID  493 (887)
Q Consensus       443 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~  493 (887)
                      +..++.++...+.+.       .+..+++.+...+..|+..+|..++.+++
T Consensus       850 ~~~vL~cl~~~~~~~-------~~~~m~~~m~~~~~~~~~~~y~~Li~g~~  893 (1060)
T PLN03218        850 LSQVLGCLQLPHDAT-------LRNRLIENLGISADSQKQSNLSTLVDGFG  893 (1060)
T ss_pred             HHHHHHHhcccccHH-------HHHHHHHHhccCCCCcchhhhHHHHHhhc
Confidence            555555544444433       33444555555667777778887777653

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=5.2e-28  Score=243.76  Aligned_cols=404  Identities=20%  Similarity=0.235  Sum_probs=300.5

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 002729           34 DNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMR  113 (887)
Q Consensus        34 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  113 (887)
                      ..+-..|+-+++.|+|++||++|.++++..|+.+..|.+++.||...|++++.++...++++++|+...+++..+.++..
T Consensus       116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~  195 (606)
T KOG0547|consen  116 AALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQ  195 (606)
T ss_pred             HHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Confidence            34556677777788888888888888888887777777888888888888888888888888888888888888888888


Q ss_pred             cCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChH----------------HHHHHHHHHHhhCC-------C--
Q 002729          114 KGRLNEAAQCCRQALALN-PLLVDAHSNLGNLMKAQGLVQ----------------EAYSCYLEALRIQP-------T--  167 (887)
Q Consensus       114 ~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~----------------~A~~~~~~al~~~p-------~--  167 (887)
                      +|++.+|+.-..-.--.+ -.+...-..+-..+.+++...                .-+..|-....-+|       .  
T Consensus       196 lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~k  275 (606)
T KOG0547|consen  196 LGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDK  275 (606)
T ss_pred             hccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCcc
Confidence            888877776543321111 111111111111221111100                01111111111111       0  


Q ss_pred             -hHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhC----CCC---------HHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002729          168 -FAIAWSNLAGLFME-SGDLNRALQYYKEAVKLK----PTF---------PDAYLNLGNVYKALGMPQEAIMCYQRAVQT  232 (887)
Q Consensus       168 -~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~----~~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  232 (887)
                       +...-..+-.++.. ...|.+|...+.+.....    ..+         ..++...|..+.-.|+...|.+.|+++++.
T Consensus       276 sDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l  355 (606)
T KOG0547|consen  276 SDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL  355 (606)
T ss_pred             chhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc
Confidence             11111111111111 124666666665544321    111         346677788888889999999999999999


Q ss_pred             CCC-hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHH
Q 002729          233 RPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLG  311 (887)
Q Consensus       233 ~p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  311 (887)
                      +|. ...|..++.+|.+.++.++....|.++..++|+++++|+..|++++-++++++|+.-|+++++++|++.-.+..++
T Consensus       356 ~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~  435 (606)
T KOG0547|consen  356 DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLC  435 (606)
T ss_pred             CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHH
Confidence            988 4449999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHH-
Q 002729          312 NIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPL------AADGLVNRGNTYKE-  384 (887)
Q Consensus       312 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~-  384 (887)
                      .+.+++++++++...|+.+....|+.++.++..|.++..++++++|++.|.+++++.|.      ++..+...|.+..+ 
T Consensus       436 ~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw  515 (606)
T KOG0547|consen  436 CALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW  515 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch
Confidence            99999999999999999999999999999999999999999999999999999999988      55556555554433 


Q ss_pred             cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 002729          385 IGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRP  437 (887)
Q Consensus       385 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  437 (887)
                      .+++..|++.+.++++++|.+..++..||.+..++|+.++|+++|+++..+.-
T Consensus       516 k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr  568 (606)
T KOG0547|consen  516 KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR  568 (606)
T ss_pred             hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            48899999999999999999999999999999999999999999999987743

>PLN03077 Protein ECB2; Provisional

Probab=99.97  E-value=2.8e-27  Score=285.75  Aligned_cols=452  Identities=13%  Similarity=0.081  Sum_probs=313.7

Q ss_pred             hHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcC
Q 002729            3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP-RFAECYGNMANAWKEKG   81 (887)
Q Consensus         3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g   81 (887)
                      ..+...|.+.|++++|..+|+++..   .+...|..+...|.+.|++++|++.|+++.+... .+..++..+...+...|
T Consensus       226 n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g  302 (857)
T PLN03077        226 NALITMYVKCGDVVSARLVFDRMPR---RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLG  302 (857)
T ss_pred             hHHHHHHhcCCCHHHHHHHHhcCCC---CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Confidence            4566778888888888888888753   2556788888888888888888888888876532 23455555555666666


Q ss_pred             CHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 002729           82 DIDLAIRYYLVAIELR-PNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLE  160 (887)
Q Consensus        82 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  160 (887)
                      +.+.|.+.+..+.+.. ..+..++..+...|.+.|++++|.++|+++..   .+...|..+...|.+.|++++|++.|++
T Consensus       303 ~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~  379 (857)
T PLN03077        303 DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYAL  379 (857)
T ss_pred             ChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHH
Confidence            6666666666655542 22355566666666666666666666665432   2344555666666666666666666665


Q ss_pred             HHhhC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhH
Q 002729          161 ALRIQ-PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKP-TFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIA  238 (887)
Q Consensus       161 al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  238 (887)
                      +.+.. ..+...+..+...+.+.|++++|.+++..+.+... .+..++..+...|.+.|++++|.++|+++.+  ++..+
T Consensus       380 M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~d~vs  457 (857)
T PLN03077        380 MEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE--KDVIS  457 (857)
T ss_pred             HHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC--CCeee
Confidence            54432 11223444444455555555555555555554432 2233455555555555555555555555432  33445


Q ss_pred             HhhHHHHHHHcCChHHHHHHHHHHHhc-CCCc----------------------------------HHHHHHHHHHHHHc
Q 002729          239 FGNLASTYYERGQADMAILYYKQAIGC-DPRF----------------------------------LEAYNNLGNALKDV  283 (887)
Q Consensus       239 ~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~----------------------------------~~~~~~la~~~~~~  283 (887)
                      |..+...|.+.|+.++|+..|+++... .|+.                                  ...+..+...|.+.
T Consensus       458 ~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~  537 (857)
T PLN03077        458 WTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRC  537 (857)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHc
Confidence            555555555555555555555555422 2221                                  22345566788888


Q ss_pred             CCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcc-CCCchhHhhHHHHHHHcCCHHHHHHHHH
Q 002729          284 GRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT-TGLSAPFNNLAVIYKQQGNYADAISCYN  362 (887)
Q Consensus       284 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~  362 (887)
                      |+.++|.+.|+++    +.+..+|+.+...|.+.|+.++|+++|+++.+.. ..+..++..+...+.+.|+.++|.++|+
T Consensus       538 G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~  613 (857)
T PLN03077        538 GRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFH  613 (857)
T ss_pred             CCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHH
Confidence            8888888888875    5678899999999999999999999999998764 3466778888899999999999999999


Q ss_pred             HHHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCh
Q 002729          363 EVLRIDP--LAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFP  440 (887)
Q Consensus       363 ~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  440 (887)
                      ++.+..+  .+...|..+..++.+.|++++|.+.++++ ...|+ ..+|..|..++...|+.+.|....+++++++|++.
T Consensus       614 ~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~  691 (857)
T PLN03077        614 SMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSV  691 (857)
T ss_pred             HHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc
Confidence            9985432  34578899999999999999999999886 35555 77899999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCChhhHhHHHHHHHH
Q 002729          441 EATCNLLHTLQCVCSWEDRDRMFSEVEG  468 (887)
Q Consensus       441 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~  468 (887)
                      ..+..+.+.|...|+|+++.++.+.|.+
T Consensus       692 ~~y~ll~n~ya~~g~~~~a~~vr~~M~~  719 (857)
T PLN03077        692 GYYILLCNLYADAGKWDEVARVRKTMRE  719 (857)
T ss_pred             chHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence            9999999999999999999888777664

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.97  E-value=5e-27  Score=276.68  Aligned_cols=470  Identities=10%  Similarity=0.036  Sum_probs=398.1

Q ss_pred             hHHHHHHHhcCCHHHHHHHHHHHHhhC-CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002729            3 MALAHQMYKSGSYKQALEHSNSVYERN-PLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG   81 (887)
Q Consensus         3 ~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g   81 (887)
                      ..+...+.+.++++.|.+++..+.+.. ..+...+..+...|.+.|++++|.++|+++.+   .+..+|..+...|.+.|
T Consensus       127 ~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~~~~t~n~li~~~~~~g  203 (697)
T PLN03081        127 DALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE---RNLASWGTIIGGLVDAG  203 (697)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC---CCeeeHHHHHHHHHHCc
Confidence            345677888999999999999988754 23678899999999999999999999998854   46788999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 002729           82 DIDLAIRYYLVAIELRPN-FADAWSNLASAYMRKGRLNEAAQCCRQALALN-PLLVDAHSNLGNLMKAQGLVQEAYSCYL  159 (887)
Q Consensus        82 ~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~  159 (887)
                      ++++|++.|+++.+.... +..++..+...+...|..+.+.+++..+.+.. ..+..++..+...|.+.|++++|.+.|+
T Consensus       204 ~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~  283 (697)
T PLN03081        204 NYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFD  283 (697)
T ss_pred             CHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHH
Confidence            999999999999876533 46788888999999999999999999888775 3466788999999999999999999998


Q ss_pred             HHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--CCh
Q 002729          160 EALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK-PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR--PNA  236 (887)
Q Consensus       160 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~  236 (887)
                      ++.   +.+..+|+.++..|.+.|+.++|+++|+++.+.. ..+..++..+...+.+.|++++|.+++..+.+..  |+.
T Consensus       284 ~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~  360 (697)
T PLN03081        284 GMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDI  360 (697)
T ss_pred             hCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCe
Confidence            864   4578899999999999999999999999998754 2356789999999999999999999999999864  568


Q ss_pred             hHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHhHHHHHH
Q 002729          237 IAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ-PSHPQALTNLGNIYM  315 (887)
Q Consensus       237 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~  315 (887)
                      ..+..+...|.+.|++++|.+.|+++.+  | +..+|+.+...|.+.|+.++|+++|+++.+.. ..+..++..+...+.
T Consensus       361 ~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~  437 (697)
T PLN03081        361 VANTALVDLYSKWGRMEDARNVFDRMPR--K-NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACR  437 (697)
T ss_pred             eehHHHHHHHHHCCCHHHHHHHHHhCCC--C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence            8999999999999999999999999864  3 45589999999999999999999999998763 345778888999999


Q ss_pred             HcCChhHHHHHHHHHHhcc--CCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002729          316 EWNMLPAAASYYKATLAVT--TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQ  393 (887)
Q Consensus       316 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~  393 (887)
                      +.|..++|.++|+.+.+..  ..+...|..+..+|.+.|++++|.+.++++- .. .+...|..+...+...|+++.|..
T Consensus       438 ~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~-p~~~~~~~Ll~a~~~~g~~~~a~~  515 (697)
T PLN03081        438 YSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP-FK-PTVNMWAALLTACRIHKNLELGRL  515 (697)
T ss_pred             cCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC-CC-CCHHHHHHHHHHHHHcCCcHHHHH
Confidence            9999999999999998643  3455679999999999999999999998752 22 356679999999999999999999


Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--ChHHHHHHHH--HhhhcCC--hhhHhHHHHHHH
Q 002729          394 DYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD--FPEATCNLLH--TLQCVCS--WEDRDRMFSEVE  467 (887)
Q Consensus       394 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~--~~~~~g~--~~~a~~~~~~~~  467 (887)
                      .+++++++.|++...|..++.+|.+.|++++|.++++++.+.+-.  +.-.|..+..  .-...|+  ..+..++++.+.
T Consensus       516 ~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~  595 (697)
T PLN03081        516 AAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLD  595 (697)
T ss_pred             HHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHH
Confidence            999999999999999999999999999999999999999987532  1111111100  0011122  445677888999


Q ss_pred             HHHHHHhccCCCCCCC
Q 002729          468 GIIRRQVNMSVLPSVQ  483 (887)
Q Consensus       468 ~~~~~~~~~~~~p~~~  483 (887)
                      ++..+|.+.|..|+..
T Consensus       596 ~l~~~~~~~gy~~~~~  611 (697)
T PLN03081        596 ELMKEISEYGYVAEEN  611 (697)
T ss_pred             HHHHHHHHcCCCCCcc
Confidence            9999999999999854

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.6e-27  Score=238.73  Aligned_cols=400  Identities=18%  Similarity=0.216  Sum_probs=321.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 002729            4 ALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDI   83 (887)
Q Consensus         4 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~   83 (887)
                      ..|+.++++|+|++||++|.++++..|+.+..|..++.||...|++++.++...++++++|+...+++.++.++..+|++
T Consensus       120 ~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~  199 (606)
T KOG0547|consen  120 TKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKF  199 (606)
T ss_pred             hhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccH
Confidence            46889999999999999999999999988999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCChHHHHHHHH-----------------HHHHhCC-------CC-HHH
Q 002729           84 DLAIRYYLVAIELR-PNFADAWSNLASAYMRKGRLNEAAQCCR-----------------QALALNP-------LL-VDA  137 (887)
Q Consensus        84 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~-----------------~~l~~~p-------~~-~~~  137 (887)
                      ++|+....-..-.. -++...-..+-+.+-+++. .++.+-+.                 .....+|       .+ .+.
T Consensus       200 ~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~-~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa  278 (606)
T KOG0547|consen  200 DEALFDVTVLCILEGFQNASIEPMAERVLKKQAM-KKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDA  278 (606)
T ss_pred             HHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHH-HHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchh
Confidence            99987664432211 1112111111122221111 11111111                 1111111       00 111


Q ss_pred             H--HHHHHHHHH-cCChHHHHHHHHHHHhhC----CCh---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002729          138 H--SNLGNLMKA-QGLVQEAYSCYLEALRIQ----PTF---------AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPT  201 (887)
Q Consensus       138 ~--~~la~~~~~-~g~~~~A~~~~~~al~~~----p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~  201 (887)
                      .  ..+-..+.. ...|.+|...+.+.....    ..+         ..++...|..++-.|+.-.|...|+++++++|.
T Consensus       279 ~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~  358 (606)
T KOG0547|consen  279 ALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPA  358 (606)
T ss_pred             hHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcc
Confidence            1  111111111 124666666665544321    111         556777788888899999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 002729          202 FPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNAL  280 (887)
Q Consensus       202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~  280 (887)
                      +...|..++.+|....+.++....|.++..++|+ +.+|+..|++++-.+++++|+.-|++++.++|++.-.+..++.+.
T Consensus       359 ~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~  438 (606)
T KOG0547|consen  359 FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCAL  438 (606)
T ss_pred             cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHH
Confidence            9999999999999999999999999999999998 999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCC------CchhHhhHHHHHH-HcCC
Q 002729          281 KDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTG------LSAPFNNLAVIYK-QQGN  353 (887)
Q Consensus       281 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~-~~g~  353 (887)
                      .++++++++...|+.+++.+|+.++++...+.++..++++++|.+.|++++.+.|.      ++..+..-|.+.. -.++
T Consensus       439 Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d  518 (606)
T KOG0547|consen  439 YRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKED  518 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhh
Confidence            99999999999999999999999999999999999999999999999999999998      5555555444433 4589


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002729          354 YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT  404 (887)
Q Consensus       354 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  404 (887)
                      +.+|+++++++++++|....++..+|.+..++|+.++|+++|+++..+...
T Consensus       519 ~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt  569 (606)
T KOG0547|consen  519 INQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLART  569 (606)
T ss_pred             HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999887543

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.97  E-value=3e-25  Score=230.80  Aligned_cols=448  Identities=16%  Similarity=0.092  Sum_probs=347.5

Q ss_pred             CCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002729           13 GSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLV   92 (887)
Q Consensus        13 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~   92 (887)
                      .+-+.|+.++.++.+..|.+.+.|..++.    +.-|+.|...+.++-+.-|.+...|..-+..-..+|+.+.-.++..+
T Consensus       390 E~~~darilL~rAveccp~s~dLwlAlar----LetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~r  465 (913)
T KOG0495|consen  390 EEPEDARILLERAVECCPQSMDLWLALAR----LETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDR  465 (913)
T ss_pred             cChHHHHHHHHHHHHhccchHHHHHHHHH----HHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            34444555555555555555555544332    33455555555555555555555555555555555555544444444


Q ss_pred             H---------------------------------------HhcC---CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 002729           93 A---------------------------------------IELR---PNFADAWSNLASAYMRKGRLNEAAQCCRQALAL  130 (887)
Q Consensus        93 a---------------------------------------l~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  130 (887)
                      .                                       +...   .+....|..-++.+.+.+.++-|..+|..+++.
T Consensus       466 gl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv  545 (913)
T KOG0495|consen  466 GLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV  545 (913)
T ss_pred             HHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh
Confidence            3                                       3321   223446667777777888888888888888888


Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 002729          131 NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLG  210 (887)
Q Consensus       131 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~  210 (887)
                      .|.....|...+..-...|..++-..++++++...|.....|...+..+...|+...|..++.++++.+|++.++|+.-.
T Consensus       546 fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaav  625 (913)
T KOG0495|consen  546 FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAV  625 (913)
T ss_pred             ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHcCChHHHHHHHHHHHhhCCChhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 002729          211 NVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAI  290 (887)
Q Consensus       211 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~  290 (887)
                      .+.....+++.|..+|.++....|....|+.-+.....+++.++|+++++++++..|+....|..+|+++.++++.+.|.
T Consensus       626 Kle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR  705 (913)
T KOG0495|consen  626 KLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAR  705 (913)
T ss_pred             HHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002729          291 QCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPL  370 (887)
Q Consensus       291 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  370 (887)
                      +.|...++..|..+..|..++.+-.+.|+...|..+++++.-.+|++...|.....+-.+.|+.++|...+.++++..|.
T Consensus       706 ~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~  785 (913)
T KOG0495|consen  706 EAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPS  785 (913)
T ss_pred             HHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Q 002729          371 AADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTL  450 (887)
Q Consensus       371 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  450 (887)
                      +...|..-....-+-++-..+    ..|++....++.++...+.++....++++|+++|.++++.+|++.++|..+...+
T Consensus       786 sg~LWaEaI~le~~~~rkTks----~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfe  861 (913)
T KOG0495|consen  786 SGLLWAEAIWLEPRPQRKTKS----IDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFE  861 (913)
T ss_pred             cchhHHHHHHhccCcccchHH----HHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHH
Confidence            877777666665555553333    3444555667889999999999999999999999999999999999999999999


Q ss_pred             hhcCChhhHhHHHHHHHH
Q 002729          451 QCVCSWEDRDRMFSEVEG  468 (887)
Q Consensus       451 ~~~g~~~~a~~~~~~~~~  468 (887)
                      ..+|.-++..+++.+...
T Consensus       862 l~hG~eed~kev~~~c~~  879 (913)
T KOG0495|consen  862 LRHGTEEDQKEVLKKCET  879 (913)
T ss_pred             HHhCCHHHHHHHHHHHhc
Confidence            999988888777777654

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.97  E-value=1.3e-25  Score=258.38  Aligned_cols=439  Identities=14%  Similarity=0.026  Sum_probs=280.9

Q ss_pred             hHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002729            3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD   82 (887)
Q Consensus         3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~   82 (887)
                      +..+...+++|++++|+..|+++++.+|.++.....++.++...|+.++|+.++++++...|........+|..+...|+
T Consensus        38 y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gd  117 (822)
T PRK14574         38 YDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKR  117 (822)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC
Confidence            55667777777777777777777777776654433666666777777777777777773333344444445667777777


Q ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002729           83 IDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEAL  162 (887)
Q Consensus        83 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  162 (887)
                      +++|++.|+++++.+|+++.++..++..+...++.++|++.++++...+|.+... ..++.++...++..+|++.+++++
T Consensus       118 yd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll  196 (822)
T PRK14574        118 WDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAV  196 (822)
T ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHH
Confidence            7777777777777777777777777777777777777777777777777764443 445555555666666777777777


Q ss_pred             hhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH--HHHHHHHHc---------C---ChHHHHHHHHH
Q 002729          163 RIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYL--NLGNVYKAL---------G---MPQEAIMCYQR  228 (887)
Q Consensus       163 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~--~l~~~~~~~---------g---~~~~A~~~~~~  228 (887)
                      +.+|++...+..+..++.+.|-...|.+...+--.........+.  ..+.-..+.         .   -.+.|+..+++
T Consensus       197 ~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~  276 (822)
T PRK14574        197 RLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN  276 (822)
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence            777777777777777777777777776655543221111111111  111111111         1   12345555555


Q ss_pred             HHh---hCCC-----hhHHhhHHHHHHHcCChHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002729          229 AVQ---TRPN-----AIAFGNLASTYYERGQADMAILYYKQAIGCD-PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL  299 (887)
Q Consensus       229 ~~~---~~p~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  299 (887)
                      ++.   ..|.     ..+......++...+++.++++.|+.+.... +-...+....|..|...++.++|+.+|++++..
T Consensus       277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~  356 (822)
T PRK14574        277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYS  356 (822)
T ss_pred             HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence            555   2232     1223344555666677777777777766333 222335566677777777777777777777664


Q ss_pred             CC------CChHHHHhHHHHHHHcCChhHHHHHHHHHHhccC---------------CCchhHhhHHHHHHHcCCHHHHH
Q 002729          300 QP------SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTT---------------GLSAPFNNLAVIYKQQGNYADAI  358 (887)
Q Consensus       300 ~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------------~~~~~~~~la~~~~~~g~~~~A~  358 (887)
                      .+      .+......|...|...+++++|..++++..+..|               +-......++.++...|++.+|+
T Consensus       357 ~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae  436 (822)
T PRK14574        357 DGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQ  436 (822)
T ss_pred             cccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHH
Confidence            42      1222345666677777777777777777766433               11233445666677777777777


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 002729          359 SCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD  438 (887)
Q Consensus       359 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  438 (887)
                      +.+++++...|.+...+..+|.++...|.+.+|.+.++.+..++|++..+...++.++..+|++.+|....+++++..|+
T Consensus       437 ~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe  516 (822)
T PRK14574        437 KKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPE  516 (822)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCC
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             ChHH
Q 002729          439 FPEA  442 (887)
Q Consensus       439 ~~~~  442 (887)
                      ++.+
T Consensus       517 ~~~~  520 (822)
T PRK14574        517 DIPS  520 (822)
T ss_pred             chhH
Confidence            7644

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.96  E-value=3.8e-25  Score=254.62  Aligned_cols=442  Identities=16%  Similarity=0.042  Sum_probs=368.9

Q ss_pred             hhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 002729           27 ERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSN  106 (887)
Q Consensus        27 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  106 (887)
                      -..|..+...+..+.+.++.|+++.|+..|+++++.+|.++.....++.++...|+.++|+.++++++...|........
T Consensus        28 ~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~lla  107 (822)
T PRK14574         28 VVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLAS  107 (822)
T ss_pred             ccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHH
Confidence            45688899999999999999999999999999999999996554488999999999999999999999444555556666


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHH
Q 002729          107 LASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLN  186 (887)
Q Consensus       107 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  186 (887)
                      +|.++...|++++|++.|+++++.+|+++.++..++..+...++.++|++.++++...+|.+... ..++.++...++..
T Consensus       108 lA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~  186 (822)
T PRK14574        108 AARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNY  186 (822)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHH
Confidence            68899999999999999999999999999999999999999999999999999999999986554 55666666678887


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHh--hHHHHHHHc---------C---C
Q 002729          187 RALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFG--NLASTYYER---------G---Q  251 (887)
Q Consensus       187 ~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~--~la~~~~~~---------g---~  251 (887)
                      +|++.++++++.+|++.+++..+..++...|-...|.++..+-...... ...+.  ..+.-..+.         +   -
T Consensus       187 ~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~  266 (822)
T PRK14574        187 DALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI  266 (822)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence            8999999999999999999999999999999999999877764433222 11111  111111111         1   2


Q ss_pred             hHHHHHHHHHHHh---cCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHhHHHHHHHcCChhHH
Q 002729          252 ADMAILYYKQAIG---CDPRF----LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ-PSHPQALTNLGNIYMEWNMLPAA  323 (887)
Q Consensus       252 ~~~A~~~~~~~l~---~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A  323 (887)
                      .+.|+.-+++++.   ..|..    ..+......++...|++.++++.|+.+.... +-...+....|+.|...++.++|
T Consensus       267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA  346 (822)
T PRK14574        267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA  346 (822)
T ss_pred             HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence            3556777777775   33432    2344556677888999999999999987655 33455788899999999999999


Q ss_pred             HHHHHHHHhccCC------CchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCC---------------CCHHHHHHHHHHH
Q 002729          324 ASYYKATLAVTTG------LSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP---------------LAADGLVNRGNTY  382 (887)
Q Consensus       324 ~~~~~~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---------------~~~~~~~~l~~~~  382 (887)
                      +.+|++++...++      .......|...|...+++++|..+++++.+..|               +..+....++.++
T Consensus       347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~  426 (822)
T PRK14574        347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL  426 (822)
T ss_pred             HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence            9999999886532      233346788899999999999999999988544               2345778889999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHhhhcCChhhHhHH
Q 002729          383 KEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRM  462 (887)
Q Consensus       383 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~a~~~  462 (887)
                      ...|++.+|.+.+++.+...|.|..++..+|.++...|++.+|++.++.+..++|++..+....+..+...++|.++...
T Consensus       427 ~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~  506 (822)
T PRK14574        427 VALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELL  506 (822)
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHH
Q 002729          463 FSEVEGI  469 (887)
Q Consensus       463 ~~~~~~~  469 (887)
                      .+.+.+.
T Consensus       507 ~~~l~~~  513 (822)
T PRK14574        507 TDDVISR  513 (822)
T ss_pred             HHHHHhh
Confidence            8887763

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.96  E-value=3.1e-26  Score=227.93  Aligned_cols=452  Identities=21%  Similarity=0.235  Sum_probs=375.5

Q ss_pred             hhHHHHHHHhcCCHHHHHHHHHHHHhh--CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-----HHHHHHHH
Q 002729            2 HMALAHQMYKSGSYKQALEHSNSVYER--NPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF-----AECYGNMA   74 (887)
Q Consensus         2 ~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la   74 (887)
                      ++.+|..|..+..+.+|+..|+-+++.  .|+....-..+|.+++++.+|.+|+++|+.++..-|.-     ...+.++|
T Consensus       204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig  283 (840)
T KOG2003|consen  204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG  283 (840)
T ss_pred             HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence            578899999999999999999988763  36666677889999999999999999999999988762     56788899


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--C---------CCHH-HHHHHH
Q 002729           75 NAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALN--P---------LLVD-AHSNLG  142 (887)
Q Consensus        75 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p---------~~~~-~~~~la  142 (887)
                      ..+.+.|+|++|+..|+.+.+..|+.. +-+++..+++..|+-++-.+.|.+++.+.  +         +++. .+..-+
T Consensus       284 vtfiq~gqy~dainsfdh~m~~~pn~~-a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ea  362 (840)
T KOG2003|consen  284 VTFIQAGQYDDAINSFDHCMEEAPNFI-AALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEA  362 (840)
T ss_pred             eeEEecccchhhHhhHHHHHHhCccHH-hhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHH
Confidence            999999999999999999999999854 55667788899999999999999998752  1         1211 111111


Q ss_pred             ---HHHHH--cCChHHHHHHHHHHHhh-----CCCh--------------------HHHHHHHHHHHHHcCCHHHHHHHH
Q 002729          143 ---NLMKA--QGLVQEAYSCYLEALRI-----QPTF--------------------AIAWSNLAGLFMESGDLNRALQYY  192 (887)
Q Consensus       143 ---~~~~~--~g~~~~A~~~~~~al~~-----~p~~--------------------~~~~~~la~~~~~~g~~~~A~~~~  192 (887)
                         ..+..  ..+-..|.+..-.+.++     .|+.                    ...-.+.+..+++.|+++.|++++
T Consensus       363 i~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieil  442 (840)
T KOG2003|consen  363 IKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEIL  442 (840)
T ss_pred             HhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHH
Confidence               11111  12222333333332222     1221                    112234566788999999999998


Q ss_pred             HHHHhhCCCCH-HHHHHHHHHHHHc--CChHHHHHHHHHHHhhCCC-hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 002729          193 KEAVKLKPTFP-DAYLNLGNVYKAL--GMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPR  268 (887)
Q Consensus       193 ~~~l~~~~~~~-~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~  268 (887)
                      +-.-+.+.... .+-.++..+++.+  .++.+|..+...++..+.- ..+..+.|.+.+..|++++|.+.|++++..+..
T Consensus       443 kv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas  522 (840)
T KOG2003|consen  443 KVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS  522 (840)
T ss_pred             HHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH
Confidence            87665544332 2445565555553  4688899999999887664 788889999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHH
Q 002729          269 FLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIY  348 (887)
Q Consensus       269 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  348 (887)
                      ..++++++|..+..+|+.++|+++|-+.-.+--++.++++.++.+|....+..+|++++.++...-|+++.++..++.+|
T Consensus       523 c~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dly  602 (840)
T KOG2003|consen  523 CTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLY  602 (840)
T ss_pred             HHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHh
Confidence            99999999999999999999999999998888889999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHH
Q 002729          349 KQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKS  428 (887)
Q Consensus       349 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  428 (887)
                      -+.|+-.+|.+++-......|.+.+..-++|..|....-+++|+.+|+++.-+.|+.......++.|+.+.|++++|.+.
T Consensus       603 dqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~  682 (840)
T KOG2003|consen  603 DQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDL  682 (840)
T ss_pred             hcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999988888999999999999999999


Q ss_pred             HHHHHHcCCCChHHHHHHHHHhhhcC
Q 002729          429 YKQALLLRPDFPEATCNLLHTLQCVC  454 (887)
Q Consensus       429 ~~~al~~~p~~~~~~~~l~~~~~~~g  454 (887)
                      |+..-...|.+.+.+-.|.......|
T Consensus       683 yk~~hrkfpedldclkflvri~~dlg  708 (840)
T KOG2003|consen  683 YKDIHRKFPEDLDCLKFLVRIAGDLG  708 (840)
T ss_pred             HHHHHHhCccchHHHHHHHHHhcccc
Confidence            99999999999999888887776655

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=3e-25  Score=228.60  Aligned_cols=438  Identities=20%  Similarity=0.228  Sum_probs=370.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 002729            5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDID   84 (887)
Q Consensus         5 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~   84 (887)
                      +.+.+..+.+|.-|+-.-+++.... .++.-.+.++++++-.++|..|......- +....+..+.+..+.++.+..+++
T Consensus        22 ~~r~~l~q~~y~~a~f~adkV~~l~-~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~~   99 (611)
T KOG1173|consen   22 LVRDALMQHRYKTALFWADKVAGLT-NDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEWD   99 (611)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHhcc-CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHH
Confidence            4456777889999999999998776 78888899999999999999998887765 566677889999999999999999


Q ss_pred             HHHHHHHHH------HhcCCCc-------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHH
Q 002729           85 LAIRYYLVA------IELRPNF-------------------ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHS  139 (887)
Q Consensus        85 ~A~~~~~~a------l~~~p~~-------------------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~  139 (887)
                      +|..++...      +..++.+                   ....+..|.+|....+.++|...|.+++..++...++..
T Consensus       100 ~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~  179 (611)
T KOG1173|consen  100 QALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFE  179 (611)
T ss_pred             HHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHH
Confidence            999988732      1111111                   223556778888899999999999999999887766655


Q ss_pred             HHHHHHHHc-----------------CChHHHHHHHHHHHh----------hC--------CChHHHHHHHHHHHHHcCC
Q 002729          140 NLGNLMKAQ-----------------GLVQEAYSCYLEALR----------IQ--------PTFAIAWSNLAGLFMESGD  184 (887)
Q Consensus       140 ~la~~~~~~-----------------g~~~~A~~~~~~al~----------~~--------p~~~~~~~~la~~~~~~g~  184 (887)
                      .+.....-.                 +...+-++.+-++..          .+        .++.......+..++..++
T Consensus       180 ~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~  259 (611)
T KOG1173|consen  180 KLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCR  259 (611)
T ss_pred             HHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcCh
Confidence            443322211                 111111111111110          01        2346677788899999999


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHhhHHHHHHHcCChHHHHHHHHHHH
Q 002729          185 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAI  263 (887)
Q Consensus       185 ~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l  263 (887)
                      +.+..++.+..++.+|-+...+....-++.+.|+..+-..+-.++.+..|+ +..|+.+|..|...|++.+|..+|.++.
T Consensus       260 f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat  339 (611)
T KOG1173|consen  260 FKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKAT  339 (611)
T ss_pred             HHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHh
Confidence            999999999999999999887766666999999999988888899999998 9999999999999999999999999999


Q ss_pred             hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhh
Q 002729          264 GCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNN  343 (887)
Q Consensus       264 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  343 (887)
                      .++|....+|...|..+...|..++|+..|..+-++.|....-...+|.-|...++++-|.++|.+++.+.|.++...+.
T Consensus       340 ~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~E  419 (611)
T KOG1173|consen  340 TLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHE  419 (611)
T ss_pred             hcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhh
Confidence            99999999999999999999999999999999999999998888999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcC----CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 002729          344 LAVIYKQQGNYADAISCYNEVLRID----PL---AADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAY  416 (887)
Q Consensus       344 la~~~~~~g~~~~A~~~~~~al~~~----p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  416 (887)
                      +|.+.+..+.+.+|..+|+.++..-    ++   -...+.++|.++.+++++++|+..|++++.+.|.++.++..+|.+|
T Consensus       420 lgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy  499 (611)
T KOG1173|consen  420 LGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIY  499 (611)
T ss_pred             hhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Confidence            9999999999999999999998432    22   2346899999999999999999999999999999999999999999


Q ss_pred             HhCCCHHHHHHHHHHHHHcCCCChHHHH
Q 002729          417 KDSGHVEAAIKSYKQALLLRPDFPEATC  444 (887)
Q Consensus       417 ~~~g~~~~A~~~~~~al~~~p~~~~~~~  444 (887)
                      ..+|+++.|++.|.+++.+.|++..+..
T Consensus       500 ~llgnld~Aid~fhKaL~l~p~n~~~~~  527 (611)
T KOG1173|consen  500 HLLGNLDKAIDHFHKALALKPDNIFISE  527 (611)
T ss_pred             HHhcChHHHHHHHHHHHhcCCccHHHHH
Confidence            9999999999999999999999865543

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.3e-24  Score=218.26  Aligned_cols=422  Identities=18%  Similarity=0.200  Sum_probs=318.4

Q ss_pred             hHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHH-------------------HHHHHHHHHHhc-
Q 002729            3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYD-------------------MCIARNEEALRL-   62 (887)
Q Consensus         3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~-------------------~A~~~~~~al~~-   62 (887)
                      +.+|..++..+.++.|.-.++....     ....+..-.+.+-.|..+                   ..+..+.+-++. 
T Consensus        82 y~laks~fd~kEf~Raa~fL~~~~s-----~k~~FL~lysk~La~~kk~~e~~~~~l~~~~~~~~~~~~l~~L~~~le~~  156 (559)
T KOG1155|consen   82 YLLAKSYFDCKEFERAAFFLQNCKS-----KKSAFLRLYSKYLAGEKKSEEEMAELLGRLESFSRINSELIELNKPLESK  156 (559)
T ss_pred             hhhHhhhhhhHHHHHHHHHHHhcch-----HHHHHHHHHHHHHhhhHHHHHHHHHhhccchhhhhhhhHHHHHhhHHHHH
Confidence            4678899999999999888877643     222222222222222111                   111111111111 


Q ss_pred             ---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CCHHH
Q 002729           63 ---EPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNP--LLVDA  137 (887)
Q Consensus        63 ---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~  137 (887)
                         ...++..++..|.++.+.|....|+..|..++...|-+-.+|..|+.+....       +.........|  .+.-.
T Consensus       157 ~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~-------e~~~~l~~~l~~~~h~M~  229 (559)
T KOG1155|consen  157 HCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDI-------EILSILVVGLPSDMHWMK  229 (559)
T ss_pred             HhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchH-------HHHHHHHhcCcccchHHH
Confidence               2345777888888888899999999999888888888888888887765322       22222222223  23333


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhh-CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 002729          138 HSNLGNLMKAQGLVQEAYSCYLEALRI-QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKAL  216 (887)
Q Consensus       138 ~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~  216 (887)
                      -..+..++....+.++++.-++..... .|.+...-...|.+...+.++++|+..|+...+.+|-..+-.-...++++-.
T Consensus       230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~  309 (559)
T KOG1155|consen  230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK  309 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH
Confidence            445667777777888888888888777 7888888888888888899999999999999888887666555556666555


Q ss_pred             CChHHHHHHHHHHHhhCCC-hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002729          217 GMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ  295 (887)
Q Consensus       217 g~~~~A~~~~~~~~~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  295 (887)
                      .+-.+---+-+...+++.- +++...+|..|.-.++.++|+.+|+++++++|....+|..+|.-|.++++...|++.|+.
T Consensus       310 ~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRr  389 (559)
T KOG1155|consen  310 NDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRR  389 (559)
T ss_pred             hhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence            5544444444455555544 777888888888888999999999999999999988999999999999999999999999


Q ss_pred             HHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 002729          296 CLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGL  375 (887)
Q Consensus       296 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  375 (887)
                      +++++|.+..+|+.+|++|.-++...-|+-+|+++....|+++..|..||.+|.+.++.++|+++|..++..+..+..++
T Consensus       390 Avdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l  469 (559)
T KOG1155|consen  390 AVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSAL  469 (559)
T ss_pred             HHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998888888889


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHh-------cCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 002729          376 VNRGNTYKEIGRVTDAIQDYIRAIT-------IRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLR  436 (887)
Q Consensus       376 ~~l~~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  436 (887)
                      ..+|.+|.++++.++|..+|++.++       ..|+-..+...|+.-+.+.+++++|..+..+++.-+
T Consensus       470 ~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~  537 (559)
T KOG1155|consen  470 VRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGE  537 (559)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCC
Confidence            9999999999999999999998887       345556677778888889999999888877776653

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.95  E-value=7.8e-24  Score=229.78  Aligned_cols=296  Identities=22%  Similarity=0.276  Sum_probs=245.6

Q ss_pred             hhHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002729            2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG   81 (887)
Q Consensus         2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g   81 (887)
                      ++..|+.++..|++++|..++.++++++|.++.+|+.+|.+|.++|+.+++...+-.+-.++|++.+.|..++....++|
T Consensus       142 ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~  221 (895)
T KOG2076|consen  142 LLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLG  221 (895)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCChHHHHH
Q 002729           82 DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLV-----DAHSNLGNLMKAQGLVQEAYS  156 (887)
Q Consensus        82 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~  156 (887)
                      ++++|+-+|.++++.+|.+.......+.+|.+.|+...|...|.+++...|...     ..-...+..+...++-+.|.+
T Consensus       222 ~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~  301 (895)
T KOG2076|consen  222 NINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK  301 (895)
T ss_pred             cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            999999999999999999999999999999999999999999999999998311     122334566667777788888


Q ss_pred             HHHHHHhh--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------------------------------------
Q 002729          157 CYLEALRI--QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVK-------------------------------------  197 (887)
Q Consensus       157 ~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-------------------------------------  197 (887)
                      .++.++..  +......++.++.++.+..+++.|.........                                     
T Consensus       302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~  381 (895)
T KOG2076|consen  302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI  381 (895)
T ss_pred             HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence            88877763  222334455666666666666666655444332                                     


Q ss_pred             ------------------------hC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--hhHHhhHHHHHHH
Q 002729          198 ------------------------LK---PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN--AIAFGNLASTYYE  248 (887)
Q Consensus       198 ------------------------~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~la~~~~~  248 (887)
                                              .+   .+.++.+..++.++...|++.+|+.+|..+....+.  ...|..+|.+|..
T Consensus       382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~  461 (895)
T KOG2076|consen  382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME  461 (895)
T ss_pred             hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence                                    00   123446778888888888888888888888876655  6688888888888


Q ss_pred             cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002729          249 RGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCL  297 (887)
Q Consensus       249 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  297 (887)
                      .|.+++|++.|++++...|++.++...|+.++.++|+.++|.+.++...
T Consensus       462 l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~  510 (895)
T KOG2076|consen  462 LGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII  510 (895)
T ss_pred             HhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence            8888888888888888888888888888888888888888888887754

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=2.5e-24  Score=221.46  Aligned_cols=430  Identities=22%  Similarity=0.261  Sum_probs=304.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 002729            4 ALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDI   83 (887)
Q Consensus         4 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~   83 (887)
                      ..++..+..|+|+.|+.+|.+++..+|.+...+.....+|..+|+|++|++.-.+.++++|..+..|..+|..+.-+|+|
T Consensus         7 ~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~   86 (539)
T KOG0548|consen    7 EKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDY   86 (539)
T ss_pred             HHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccH
Confidence            56889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHH
Q 002729           84 DLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQG-LVQEAYSCYLEAL  162 (887)
Q Consensus        84 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al  162 (887)
                      ++|+..|.+.++.+|++...+..++.++...  +.. .+.|        ..+..+..+...-.... ..+.+.....+.+
T Consensus        87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~--~~~-~~~~--------~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~  155 (539)
T KOG0548|consen   87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLED--YAA-DQLF--------TKPYFHEKLANLPLTNYSLSDPAYVKILEII  155 (539)
T ss_pred             HHHHHHHHHHhhcCCchHHHHHhHHHhhhHH--HHh-hhhc--------cCcHHHHHhhcChhhhhhhccHHHHHHHHHh
Confidence            9999999999999999999999999888211  111 1111        11111111111100000 0111222222222


Q ss_pred             hhCCChHHHHHH-------HHHHHHHcCCH-HHHHHHH---------HHHHhhCC------------CCHHHHHHHHHHH
Q 002729          163 RIQPTFAIAWSN-------LAGLFMESGDL-NRALQYY---------KEAVKLKP------------TFPDAYLNLGNVY  213 (887)
Q Consensus       163 ~~~p~~~~~~~~-------la~~~~~~g~~-~~A~~~~---------~~~l~~~~------------~~~~~~~~l~~~~  213 (887)
                      ..+|.+...+..       ++.+.. .+.. ..+....         .+.....|            ....-...+|+..
T Consensus       156 ~~~p~~l~~~l~d~r~m~a~~~l~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaa  234 (539)
T KOG0548|consen  156 QKNPTSLKLYLNDPRLMKADGQLKG-VDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAA  234 (539)
T ss_pred             hcCcHhhhcccccHHHHHHHHHHhc-CccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHH
Confidence            222222211111       110000 0000 0000000         00000000            0012345667777


Q ss_pred             HHcCChHHHHHHHHHHHhhCCChhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcH-------HHHHHHHHHHHHcCCH
Q 002729          214 KALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFL-------EAYNNLGNALKDVGRV  286 (887)
Q Consensus       214 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-------~~~~~la~~~~~~g~~  286 (887)
                      .+..++..|++.|.+++++..+...+.+.+.+|+..|.+.+.+....++++......       .....+|..+.+.+++
T Consensus       235 ykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~  314 (539)
T KOG0548|consen  235 YKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDY  314 (539)
T ss_pred             HHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhH
Confidence            777777777777777777774455666677777777777777777666664433322       2333456677777888


Q ss_pred             HHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHh
Q 002729          287 DEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLR  366 (887)
Q Consensus       287 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  366 (887)
                      +.|+.+|++++...-.        ..+..+....++++...+...-.+|.-..--..-|..+++.|+|.+|+..|.++++
T Consensus       315 ~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk  386 (539)
T KOG0548|consen  315 EGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK  386 (539)
T ss_pred             HHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence            8999999887765433        45556666777777777777777777766667778999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHHHHH
Q 002729          367 IDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL  446 (887)
Q Consensus       367 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  446 (887)
                      .+|+++..|.+++.||.++|.+..|++..+++++++|+...+|..-|.++..+.+|++|.+.|+++++.+|++.++...+
T Consensus       387 r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~  466 (539)
T KOG0548|consen  387 RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGY  466 (539)
T ss_pred             cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988888777


Q ss_pred             HHHhhhc
Q 002729          447 LHTLQCV  453 (887)
Q Consensus       447 ~~~~~~~  453 (887)
                      ..+....
T Consensus       467 ~rc~~a~  473 (539)
T KOG0548|consen  467 RRCVEAQ  473 (539)
T ss_pred             HHHHHHh
Confidence            7776653

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=8.8e-24  Score=217.89  Aligned_cols=412  Identities=19%  Similarity=0.235  Sum_probs=350.6

Q ss_pred             hHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHH------HhcCCCc----------
Q 002729            3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEA------LRLEPRF----------   66 (887)
Q Consensus         3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a------l~~~p~~----------   66 (887)
                      +.+|++++-.|+|++|..+...- +.+..+....+..+.++.+..++++|..++...      +..++.+          
T Consensus        53 ~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~  131 (611)
T KOG1173|consen   53 YWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSA  131 (611)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcc
Confidence            56899999999999998887765 555668889999999999999999999998832      1111111          


Q ss_pred             ---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC-----------------ChHHH
Q 002729           67 ---------AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKG-----------------RLNEA  120 (887)
Q Consensus        67 ---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-----------------~~~~A  120 (887)
                               ....+..|.+|....+.++|...|.+++..++.+.++...+.....-.-                 ...+-
T Consensus       132 ~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~  211 (611)
T KOG1173|consen  132 GEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVER  211 (611)
T ss_pred             cccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHH
Confidence                     2356778899999999999999999999999888777665544433211                 11111


Q ss_pred             HHHHHHHH----------HhC--------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHc
Q 002729          121 AQCCRQAL----------ALN--------PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMES  182 (887)
Q Consensus       121 ~~~~~~~l----------~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  182 (887)
                      ++.+-++.          ..+        .++.+.....++.+...+++.+..+..+..++.+|-+...+-....++.+.
T Consensus       212 l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el  291 (611)
T KOG1173|consen  212 LEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYEL  291 (611)
T ss_pred             HHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHh
Confidence            11111111          001        136677888899999999999999999999999999988877777799999


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHhhHHHHHHHcCChHHHHHHHHH
Q 002729          183 GDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQ  261 (887)
Q Consensus       183 g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~  261 (887)
                      |+..+-..+-.++.+..|+.+-.|+..|..|...|++.+|.++|.++..++|. ..+|...|..+...+..++|+..|..
T Consensus       292 ~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~t  371 (611)
T KOG1173|consen  292 GKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFT  371 (611)
T ss_pred             cccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999 99999999999999999999999999


Q ss_pred             HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccC----C-
Q 002729          262 AIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTT----G-  336 (887)
Q Consensus       262 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~-  336 (887)
                      +-+.-|....-...+|.-|...++++-|.+.|.+++.+.|.++-++..+|.+....+.+.+|..+|+.++..-+    + 
T Consensus       372 Aarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~  451 (611)
T KOG1173|consen  372 AARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEK  451 (611)
T ss_pred             HHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccc
Confidence            99999988888889999999999999999999999999999999999999999999999999999999984322    1 


Q ss_pred             --CchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 002729          337 --LSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLAS  414 (887)
Q Consensus       337 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  414 (887)
                        -...++++|.++.+++++++|+..+++++.+.|.++.++..+|.+|..+|+++.|++.|.+++-+.|++..+-..|+.
T Consensus       452 ~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~  531 (611)
T KOG1173|consen  452 IFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKL  531 (611)
T ss_pred             cchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence              234588999999999999999999999999999999999999999999999999999999999999998766555554


Q ss_pred             H
Q 002729          415 A  415 (887)
Q Consensus       415 ~  415 (887)
                      +
T Consensus       532 a  532 (611)
T KOG1173|consen  532 A  532 (611)
T ss_pred             H
Confidence            3

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=4.5e-23  Score=207.17  Aligned_cols=381  Identities=18%  Similarity=0.198  Sum_probs=330.8

Q ss_pred             CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CcHHHHHHHH
Q 002729           31 LRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP--NFADAWSNLA  108 (887)
Q Consensus        31 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la  108 (887)
                      .+...++..|.++.+.|..++|++.|..++...|-+..+|..++.+...       ++........-|  .+.-.-..+.
T Consensus       162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-------~e~~~~l~~~l~~~~h~M~~~F~~  234 (559)
T KOG1155|consen  162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD-------IEILSILVVGLPSDMHWMKKFFLK  234 (559)
T ss_pred             chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-------HHHHHHHHhcCcccchHHHHHHHH
Confidence            5677889999999999999999999999999999999999998877543       222333332233  2333445677


Q ss_pred             HHHHHcCChHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHH
Q 002729          109 SAYMRKGRLNEAAQCCRQALAL-NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNR  187 (887)
Q Consensus       109 ~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  187 (887)
                      .++....+.++++.-++..... .|.+...-...|.+...+.++++|+..|+...+.+|-...-......+++-.++-.+
T Consensus       235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk  314 (559)
T KOG1155|consen  235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK  314 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence            7888888999999999998888 688888888999999999999999999999999999877767777777777776666


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHhhHHHHHHHcCChHHHHHHHHHHHhcC
Q 002729          188 ALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCD  266 (887)
Q Consensus       188 A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~  266 (887)
                      ---+.+....++.--+++..-+|+.|...++.++|+.+|+++++++|. ..+|..+|.-|..+++...|++.|+++++++
T Consensus       315 Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~  394 (559)
T KOG1155|consen  315 LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN  394 (559)
T ss_pred             HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC
Confidence            666667777788888889999999999999999999999999999999 8999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHH
Q 002729          267 PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAV  346 (887)
Q Consensus       267 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~  346 (887)
                      |.+..+|+.+|++|.-++...=|+-+|+++.+..|+++..|..||.+|.+.++.++|+++|++++.....+..++..+|.
T Consensus       395 p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~Lak  474 (559)
T KOG1155|consen  395 PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAK  474 (559)
T ss_pred             chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHh-------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhC
Q 002729          347 IYKQQGNYADAISCYNEVLR-------IDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDS  419 (887)
Q Consensus       347 ~~~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  419 (887)
                      +|.+.++.++|..+|++.++       ..|+...+...++.-+.+.+++++|..+..+++.-++.               
T Consensus       475 Lye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e---------------  539 (559)
T KOG1155|consen  475 LYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETE---------------  539 (559)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCch---------------
Confidence            99999999999999999998       34555678888999999999999998888777766443               


Q ss_pred             CCHHHHHHHHHHHHHc
Q 002729          420 GHVEAAIKSYKQALLL  435 (887)
Q Consensus       420 g~~~~A~~~~~~al~~  435 (887)
                        .++|...++++.+.
T Consensus       540 --~eeak~LlReir~~  553 (559)
T KOG1155|consen  540 --CEEAKALLREIRKI  553 (559)
T ss_pred             --HHHHHHHHHHHHHh
Confidence              45666666665543

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=4.4e-25  Score=232.68  Aligned_cols=305  Identities=21%  Similarity=0.279  Sum_probs=273.7

Q ss_pred             HHHHHHHHHH--HcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002729          137 AHSNLGNLMK--AQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYK  214 (887)
Q Consensus       137 ~~~~la~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~  214 (887)
                      .+..+|..+.  .+-+..+|+..|++.-...++...++..+|..|+++++|++|.++|+.+-+..|-..+..-.+..++.
T Consensus       319 llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LW  398 (638)
T KOG1126|consen  319 LLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLW  398 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHH
Confidence            3444444444  34456899999999777778888888999999999999999999999999988876665555566666


Q ss_pred             HcCChHHHHHHHHHHHhhCCC-hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 002729          215 ALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY  293 (887)
Q Consensus       215 ~~g~~~~A~~~~~~~~~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  293 (887)
                      .+.+.-+--.+.+.+++.+|+ +++|..+|.+|.-+++++.|++.|++++.++|....+|..+|.-+....+++.|..+|
T Consensus       399 HLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~f  478 (638)
T KOG1126|consen  399 HLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSF  478 (638)
T ss_pred             HHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHH
Confidence            666655555556667778888 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 002729          294 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAAD  373 (887)
Q Consensus       294 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  373 (887)
                      ++++..+|.+..+|+.+|.+|.++++++.|+-.|+++++++|.+......+|.++.+.|+.++|+.+|++|+.++|.++-
T Consensus       479 r~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l  558 (638)
T KOG1126|consen  479 RKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPL  558 (638)
T ss_pred             HhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChH
Q 002729          374 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE  441 (887)
Q Consensus       374 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  441 (887)
                      ..+..|.++..++++++|+..+++..++-|++..+++.+|.+|.+.|+.+.|+..|.-|..++|.-..
T Consensus       559 ~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~  626 (638)
T KOG1126|consen  559 CKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ  626 (638)
T ss_pred             hHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence            99999999999999999999999999999999999999999999999999999999999999998654

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.94  E-value=6.3e-22  Score=206.25  Aligned_cols=440  Identities=15%  Similarity=0.087  Sum_probs=402.2

Q ss_pred             hHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------------------
Q 002729            3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLE-------------------   63 (887)
Q Consensus         3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------------   63 (887)
                      +.+-.++.+..-|+.|...++++-+.-|.+..+|..-+..-..+|+.+...++..+.+..-                   
T Consensus       410 ~dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~  489 (913)
T KOG0495|consen  410 MDLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEAC  489 (913)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHH
Confidence            3455677788889999999999999999999999999999999999988888877775321                   


Q ss_pred             -----------------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHH
Q 002729           64 -----------------------PRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEA  120 (887)
Q Consensus        64 -----------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  120 (887)
                                             .+....|..-+..+.+.+.++-|+.+|..+++.+|.....|...+..-..-|..++-
T Consensus       490 e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl  569 (913)
T KOG0495|consen  490 EDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESL  569 (913)
T ss_pred             hhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHH
Confidence                                   012345667777888889999999999999999999999999999998889999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002729          121 AQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKP  200 (887)
Q Consensus       121 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~  200 (887)
                      ..++++++..-|.....|...+..+...|+...|..++.++++.+|++...|.....+.....+++.|..+|.++....|
T Consensus       570 ~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sg  649 (913)
T KOG0495|consen  570 EALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISG  649 (913)
T ss_pred             HHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988766


Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 002729          201 TFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNA  279 (887)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~  279 (887)
                      . ..+|+.-+.....+++.++|+++++++++.+|+ ...|..+|+++.+.++.+.|.+.|..-++..|.....|..++.+
T Consensus       650 T-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakl  728 (913)
T KOG0495|consen  650 T-ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKL  728 (913)
T ss_pred             c-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHH
Confidence            5 678888899999999999999999999999999 89999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHH
Q 002729          280 LKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAIS  359 (887)
Q Consensus       280 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  359 (887)
                      -.+.|+.-.|..+++++.-.+|.+...|.....+-.+.|+.++|.....++++..|++...|..-+.+.-+-++-..++.
T Consensus       729 eEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~D  808 (913)
T KOG0495|consen  729 EEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSID  808 (913)
T ss_pred             HHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999888877777777555555


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 002729          360 CYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF  439 (887)
Q Consensus       360 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  439 (887)
                      .++    ....++.++...|..+....++++|.+.|+++++.+|++.++|..+-..+...|.-++-.+++.++....|.+
T Consensus       809 ALk----kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~h  884 (913)
T KOG0495|consen  809 ALK----KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTH  884 (913)
T ss_pred             HHH----hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC
Confidence            444    4567889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHH
Q 002729          440 PEATCNLL  447 (887)
Q Consensus       440 ~~~~~~l~  447 (887)
                      ...|....
T Consensus       885 G~~W~avS  892 (913)
T KOG0495|consen  885 GELWQAVS  892 (913)
T ss_pred             CcHHHHHh
Confidence            88876643

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.94  E-value=2.7e-23  Score=229.51  Aligned_cols=300  Identities=19%  Similarity=0.170  Sum_probs=240.1

Q ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc----HHHHHHH
Q 002729           32 RTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF----ADAWSNL  107 (887)
Q Consensus        32 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l  107 (887)
                      .....+.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++..+..    ..++..+
T Consensus        34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~L  113 (389)
T PRK11788         34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQEL  113 (389)
T ss_pred             hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            345566678888888888888888888888888888888888888888888888888888887753322    2467788


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChH-----HHHHHHHHHHHHc
Q 002729          108 ASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFA-----IAWSNLAGLFMES  182 (887)
Q Consensus       108 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~  182 (887)
                      +.+|...|++++|+..|+++++.+|.+..++..++.++...|++++|++.++++++..|.+.     ..+..++..+...
T Consensus       114 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  193 (389)
T PRK11788        114 GQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR  193 (389)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC
Confidence            88888888888888888888888888888888888888888888888888888887766542     3456788888888


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--hhHHhhHHHHHHHcCChHHHHHHHH
Q 002729          183 GDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN--AIAFGNLASTYYERGQADMAILYYK  260 (887)
Q Consensus       183 g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~la~~~~~~g~~~~A~~~~~  260 (887)
                      |++++|+..++++++..|++...+..++.++...|++++|++.++++.+..|+  ...+..++.+|...|++++|...++
T Consensus       194 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~  273 (389)
T PRK11788        194 GDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLR  273 (389)
T ss_pred             CCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            88888888888888888888888888888888888888898888888887776  4567788888888899999999998


Q ss_pred             HHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHH--cCChhHHHHHHHHHHh
Q 002729          261 QAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYME--WNMLPAAASYYKATLA  332 (887)
Q Consensus       261 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~  332 (887)
                      ++++..|+.. .+..++.++.+.|++++|+..++++++..|++......+......  .|+.+++...++++++
T Consensus       274 ~~~~~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~  346 (389)
T PRK11788        274 RALEEYPGAD-LLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG  346 (389)
T ss_pred             HHHHhCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence            8888888765 447888888888999999999998888888877555444433322  4577888877777664

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=1.6e-24  Score=228.48  Aligned_cols=305  Identities=19%  Similarity=0.244  Sum_probs=231.7

Q ss_pred             HHHHHHHHHHh--cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002729           35 NLLLLGAIYYQ--LHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM  112 (887)
Q Consensus        35 ~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  112 (887)
                      .+..+|..+..  +-+..+|+..|++.-...++...+...+|..|+++++|++|.++|+.+-+..|-..+..-.+..++.
T Consensus       319 llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LW  398 (638)
T KOG1126|consen  319 LLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLW  398 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHH
Confidence            33444444433  3345677777777666666667777777888888888888888887777777766555555556666


Q ss_pred             HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHH
Q 002729          113 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYY  192 (887)
Q Consensus       113 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  192 (887)
                      ...+--+--.+.+..+..+|+.++.|..+|+++.-+++.+.|+++|+++++++|....+|..+|.-+.....+++|...|
T Consensus       399 HLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~f  478 (638)
T KOG1126|consen  399 HLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSF  478 (638)
T ss_pred             HHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHH
Confidence            66555554555566677777788888888888888888888888888888888877778888887777778888888888


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHH
Q 002729          193 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLE  271 (887)
Q Consensus       193 ~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~  271 (887)
                      ++++..+|.+-.+|+.+|.+|.++++++.|.-.|+++++++|. ......+|.++.+.|+.++|+.++++|+.++|.++-
T Consensus       479 r~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l  558 (638)
T KOG1126|consen  479 RKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPL  558 (638)
T ss_pred             HhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCch
Confidence            8888888887778888888888888888888888888888777 666777778888888888888888888888888887


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCch
Q 002729          272 AYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSA  339 (887)
Q Consensus       272 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  339 (887)
                      ..+..+.++...+++++|+..+++..+.-|++..++..+|.+|.+.|+.+.|+..|.-+..++|.-..
T Consensus       559 ~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~  626 (638)
T KOG1126|consen  559 CKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ  626 (638)
T ss_pred             hHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence            88888888888888888888888888888888888888888888888888888888888888776544

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.93  E-value=9.8e-24  Score=210.20  Aligned_cols=461  Identities=19%  Similarity=0.209  Sum_probs=374.4

Q ss_pred             HHhcCCHHHHHHHHHHHHhh------------CCC------chhHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCcHH
Q 002729            9 MYKSGSYKQALEHSNSVYER------------NPL------RTDNLLLLGAIYYQLHDYDMCIARNEEALR--LEPRFAE   68 (887)
Q Consensus         9 ~~~~g~~~~A~~~~~~~l~~------------~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~   68 (887)
                      .-..|++.+|++-.+.+-.+            -|.      ...+++.++..|....-+.+|+..|+-.++  ..|+...
T Consensus       159 an~~~~~k~aldkakdagrker~lvk~req~~~~e~inldltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~  238 (840)
T KOG2003|consen  159 ANECGDFKEALDKAKDAGRKERALVKHREQQGLPEMINLDLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGI  238 (840)
T ss_pred             HhhhhhHHHHHHHHHhcchhHHHHHHHHHhccchhhccccchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCce
Confidence            44567888887665543211            111      245778899999999999999999998875  3577777


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002729           69 CYGNMANAWKEKGDIDLAIRYYLVAIELRPN-----FADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGN  143 (887)
Q Consensus        69 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~  143 (887)
                      .-.++|.++++..+|.+|+++|+-++..-|.     ....+.++|..+.+.|+|+.|+..|+...+..|+.. +-+++..
T Consensus       239 lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~-a~~nl~i  317 (840)
T KOG2003|consen  239 LKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFI-AALNLII  317 (840)
T ss_pred             eeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHH-hhhhhhh
Confidence            7888999999999999999999999998776     245778888999999999999999999999998754 4556778


Q ss_pred             HHHHcCChHHHHHHHHHHHhh--------------CCChHHHHHHHHHH---HHHcCCHHHHHHHHHHHHhh-----CCC
Q 002729          144 LMKAQGLVQEAYSCYLEALRI--------------QPTFAIAWSNLAGL---FMESGDLNRALQYYKEAVKL-----KPT  201 (887)
Q Consensus       144 ~~~~~g~~~~A~~~~~~al~~--------------~p~~~~~~~~la~~---~~~~g~~~~A~~~~~~~l~~-----~~~  201 (887)
                      +++..|+-++-.+.|.+++.+              +|++......+-.-   .+...+-..|.+....+.++     .|+
T Consensus       318 ~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~  397 (840)
T KOG2003|consen  318 CAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPD  397 (840)
T ss_pred             hheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccc
Confidence            889999999999999999875              12221111111111   11122222333333333221     122


Q ss_pred             C--------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--hhHHhhHHHHHHHc--CChHHHHH
Q 002729          202 F--------------------PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN--AIAFGNLASTYYER--GQADMAIL  257 (887)
Q Consensus       202 ~--------------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~la~~~~~~--g~~~~A~~  257 (887)
                      .                    .+.-.+.+--+.+.|+++.|++++.-.-+.+..  ..+-.++...++.+  .++..|.+
T Consensus       398 fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqq  477 (840)
T KOG2003|consen  398 FAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQ  477 (840)
T ss_pred             hhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHH
Confidence            1                    123345567788999999999998766655443  55566776666664  47889999


Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCC
Q 002729          258 YYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGL  337 (887)
Q Consensus       258 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  337 (887)
                      +...++.++..++.+..+.|++.+..|++++|.+.|++++..+....++++++|..+..+|+.++|+.+|-+.-.+--++
T Consensus       478 yad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn  557 (840)
T KOG2003|consen  478 YADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNN  557 (840)
T ss_pred             HHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988999


Q ss_pred             chhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002729          338 SAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYK  417 (887)
Q Consensus       338 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  417 (887)
                      ...+..++.+|..+.+..+|++++.++..+-|+++.++..+|.+|-+.|+-.+|.+++-......|.+.++.-.|+..|.
T Consensus       558 ~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyi  637 (840)
T KOG2003|consen  558 AEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYI  637 (840)
T ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHhhhcCChhhHhHHHHHHHHHH
Q 002729          418 DSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGII  470 (887)
Q Consensus       418 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  470 (887)
                      ...-.++|+.+|+++--+.|+.......++.++...|++..|...++....-+
T Consensus       638 dtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkf  690 (840)
T KOG2003|consen  638 DTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKF  690 (840)
T ss_pred             hhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence            99999999999999999999988777777888889999999988887766533

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.93  E-value=7.8e-23  Score=225.78  Aligned_cols=299  Identities=17%  Similarity=0.177  Sum_probs=240.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----HHHHHHHH
Q 002729           67 AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLL----VDAHSNLG  142 (887)
Q Consensus        67 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la  142 (887)
                      ....+.+|..+...|++++|+..|+++++.+|++..++..++.++...|++++|+..+++++...+..    ...+..+|
T Consensus        35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La  114 (389)
T PRK11788         35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG  114 (389)
T ss_pred             ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence            34556668888888889999999999998888888888888998888999999999888887754322    24677888


Q ss_pred             HHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-----HHHHHHHHHHHcC
Q 002729          143 NLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD-----AYLNLGNVYKALG  217 (887)
Q Consensus       143 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~-----~~~~l~~~~~~~g  217 (887)
                      .++...|++++|+..|+++++..|.+..++..++.++...|++++|++.++++++..|.+..     .+..++.++...|
T Consensus       115 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~  194 (389)
T PRK11788        115 QDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG  194 (389)
T ss_pred             HHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC
Confidence            88888899999999999888888888888888888888899999999998888887766432     4567888888889


Q ss_pred             ChHHHHHHHHHHHhhCCC-hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002729          218 MPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRF-LEAYNNLGNALKDVGRVDEAIQCYNQ  295 (887)
Q Consensus       218 ~~~~A~~~~~~~~~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~  295 (887)
                      ++++|+..|+++++..|+ ...+..++.++...|++++|++.++++++.+|.+ ..++..++.++...|++++|...+++
T Consensus       195 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~  274 (389)
T PRK11788        195 DLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRR  274 (389)
T ss_pred             CHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            999999999988888777 6778888888888999999999999888877765 35677888888888999999999998


Q ss_pred             HHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHH--cCCHHHHHHHHHHHHh
Q 002729          296 CLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQ--QGNYADAISCYNEVLR  366 (887)
Q Consensus       296 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~  366 (887)
                      +++..|+... ...++.++.+.|++++|...++++++..|++......+...+..  .|+..+|+..++++++
T Consensus       275 ~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~  346 (389)
T PRK11788        275 ALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG  346 (389)
T ss_pred             HHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence            8888887644 47888888889999999999988888888776544333333322  4578888888887765

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.93  E-value=3e-21  Score=209.86  Aligned_cols=436  Identities=18%  Similarity=0.202  Sum_probs=338.6

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002729           33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM  112 (887)
Q Consensus        33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  112 (887)
                      ...++..|+.++..|++++|..++.++++++|.++.+|+.+|.+|.++|+.+++...+-.+-.++|++.+.|..++....
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~  218 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE  218 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence            45567778888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChH-----HHHHHHHHHHHHcCCHHH
Q 002729          113 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFA-----IAWSNLAGLFMESGDLNR  187 (887)
Q Consensus       113 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~  187 (887)
                      ++|++++|.-+|.++++.+|.+.......+.+|.+.|+...|...|.+++...|...     ......+..+...++-+.
T Consensus       219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~  298 (895)
T KOG2076|consen  219 QLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER  298 (895)
T ss_pred             hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence            999999999999999999999999999999999999999999999999999988321     223445777888888899


Q ss_pred             HHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh----------------------C--C-----Ch
Q 002729          188 ALQYYKEAVKLK--PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT----------------------R--P-----NA  236 (887)
Q Consensus       188 A~~~~~~~l~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------------------~--p-----~~  236 (887)
                      |++.++.++...  ....+.+..++.++.+...++.|..........                      .  +     +.
T Consensus       299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l  378 (895)
T KOG2076|consen  299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL  378 (895)
T ss_pred             HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence            999999998832  333456778899999999999998887766540                      0  0     11


Q ss_pred             hH-HhhHHHHHHHcCChHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChHHHHhHHHH
Q 002729          237 IA-FGNLASTYYERGQADMAILYYKQAIGCDP-RFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS-HPQALTNLGNI  313 (887)
Q Consensus       237 ~~-~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~  313 (887)
                      .. ...++.+..+..+..+++..+..--...| +..+.+..++.++...|++.+|+.++..+....+. +..+|+.+|.+
T Consensus       379 ~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c  458 (895)
T KOG2076|consen  379 RVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC  458 (895)
T ss_pred             hhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence            12 33334444444455555544433322223 45678999999999999999999999998887553 46799999999


Q ss_pred             HHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------HHHHHHHHHHHHH
Q 002729          314 YMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA---------ADGLVNRGNTYKE  384 (887)
Q Consensus       314 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~l~~~~~~  384 (887)
                      |...|.+++|++.|++++...|++..+...|+.++.++|+.++|.+.++.+..-++.+         ......+..++.+
T Consensus       459 ~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~  538 (895)
T KOG2076|consen  459 YMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQ  538 (895)
T ss_pred             HHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999877444322         2356777788888


Q ss_pred             cCCHHHHHHHHHHHHhc-------CCC-----------------------------------------------------
Q 002729          385 IGRVTDAIQDYIRAITI-------RPT-----------------------------------------------------  404 (887)
Q Consensus       385 ~g~~~~A~~~~~~al~~-------~p~-----------------------------------------------------  404 (887)
                      .|+.++=+..-...+..       .|.                                                     
T Consensus       539 ~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~  618 (895)
T KOG2076|consen  539 VGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELR  618 (895)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhc
Confidence            88877644433222210       000                                                     


Q ss_pred             --c----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--CChHHH----HHHHHHhhhcCChhhHhHHHHHHHH
Q 002729          405 --M----AEAHANLASAYKDSGHVEAAIKSYKQALLLRP--DFPEAT----CNLLHTLQCVCSWEDRDRMFSEVEG  468 (887)
Q Consensus       405 --~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~  468 (887)
                        .    .+....+..++.+.+++++|..+...+++..-  .++...    +-.+.+....++|.++...++.+..
T Consensus       619 ~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~  694 (895)
T KOG2076|consen  619 GLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVIT  694 (895)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence              0    12345567788889999999999988887642  233322    2233344455778877777666655

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.92  E-value=6e-22  Score=191.28  Aligned_cols=318  Identities=17%  Similarity=0.240  Sum_probs=200.7

Q ss_pred             hhHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002729            2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG   81 (887)
Q Consensus         2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g   81 (887)
                      ++++|..++..|++..|+..|-.+++.+|++..+++..|..|+.+|+-.-|+..+.+++++.|+...+....|.++.++|
T Consensus        41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~G  120 (504)
T KOG0624|consen   41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQG  120 (504)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcc
Confidence            45666666666777777777777666666666666677777777776666677777777666666666666666777777


Q ss_pred             CHHHHHHHHHHHHhcCCCcH---HHHH------------HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002729           82 DIDLAIRYYLVAIELRPNFA---DAWS------------NLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMK  146 (887)
Q Consensus        82 ~~~~A~~~~~~al~~~p~~~---~~~~------------~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~  146 (887)
                      .+++|...|+++++.+|++.   ++..            .....+...|+...|++....+++..|-+...+...+.+|.
T Consensus       121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i  200 (504)
T KOG0624|consen  121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYI  200 (504)
T ss_pred             cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHH
Confidence            77777777776666666421   1111            12222333455555555555555555555555555555555


Q ss_pred             HcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 002729          147 AQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCY  226 (887)
Q Consensus       147 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  226 (887)
                      ..|+...|+..++.+-++..++.+.++.++.+++..|+.+.++...+++++++|+....+-.    |.+..+..+.++. 
T Consensus       201 ~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~----YKklkKv~K~les-  275 (504)
T KOG0624|consen  201 AEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPF----YKKLKKVVKSLES-  275 (504)
T ss_pred             hcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHH----HHHHHHHHHHHHH-
Confidence            55555555555555555555555555555555555555555555555555555554322211    1111111111111 


Q ss_pred             HHHHhhCCChhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002729          227 QRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLE----AYNNLGNALKDVGRVDEAIQCYNQCLSLQPS  302 (887)
Q Consensus       227 ~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  302 (887)
                                      +......++|.++++..++.++.+|....    ....+..|+...+++.+|++.+.++++.+|+
T Consensus       276 ----------------~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~  339 (504)
T KOG0624|consen  276 ----------------AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD  339 (504)
T ss_pred             ----------------HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch
Confidence                            22234567788888888888888877432    3445566777778888888888888888888


Q ss_pred             ChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchh
Q 002729          303 HPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAP  340 (887)
Q Consensus       303 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  340 (887)
                      +..++...+.+|.....|+.|+.-|+++.+.++++..+
T Consensus       340 dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~  377 (504)
T KOG0624|consen  340 DVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA  377 (504)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence            88888888888888888888888888888888876554

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=4.9e-21  Score=189.54  Aligned_cols=438  Identities=15%  Similarity=0.107  Sum_probs=343.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhh--------------------CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 002729            4 ALAHQMYKSGSYKQALEHSNSVYER--------------------NPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLE   63 (887)
Q Consensus         4 ~la~~~~~~g~~~~A~~~~~~~l~~--------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~   63 (887)
                      .++...+...+|..|.+.|..++..                    .|.+.+.....+.||...++-+.|+....+.....
T Consensus        48 yl~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~  127 (564)
T KOG1174|consen   48 YLLNANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL  127 (564)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccc
Confidence            3455566667777777777766542                    12345667778888888888888888776543321


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHH---HH
Q 002729           64 PRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAH---SN  140 (887)
Q Consensus        64 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~---~~  140 (887)
                       ..+.....++..+-.-++-.++.-.|...+...|--......+...-  ..-.+.+-... ..+...|.....+   ..
T Consensus       128 -r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~--v~g~e~~S~~m-~~~~~~~~~dwls~wika  203 (564)
T KOG1174|consen  128 -RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELG--VNGNEINSLVM-HAATVPDHFDWLSKWIKA  203 (564)
T ss_pred             -cchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHh--hcchhhhhhhh-hheecCCCccHHHHHHHH
Confidence             23555566666666666655666666666655543222221111111  11111111111 1223333333222   23


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChH
Q 002729          141 LGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQ  220 (887)
Q Consensus       141 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~  220 (887)
                      ++.++.....+..+..++.......|+|...+..++.+++..|++.+|+..|++....+|......-..|.++...|+++
T Consensus       204 ~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e  283 (564)
T KOG1174|consen  204 LAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCE  283 (564)
T ss_pred             HHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHh
Confidence            44444444445555566666667789999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCC-hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002729          221 EAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL  299 (887)
Q Consensus       221 ~A~~~~~~~~~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  299 (887)
                      .-..+...++..... ..-|+--+...+..+++..|+.+-++++..+|.+.+++...|.++...|+.++|+-.|+.+..+
T Consensus       284 ~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L  363 (564)
T KOG1174|consen  284 QDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML  363 (564)
T ss_pred             hHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc
Confidence            999999888887744 7778888888999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHH-HHHH-HcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 002729          300 QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLA-VIYK-QQGNYADAISCYNEVLRIDPLAADGLVN  377 (887)
Q Consensus       300 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la-~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~  377 (887)
                      .|.+.+.|..+..+|...|++.+|...-+.+++..|.++.++..+| .++. .-.--++|.+++++.++++|....+-..
T Consensus       364 ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~  443 (564)
T KOG1174|consen  364 APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNL  443 (564)
T ss_pred             chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHH
Confidence            9999999999999999999999999999999999999999988886 4443 3345689999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHHHHH
Q 002729          378 RGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL  446 (887)
Q Consensus       378 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  446 (887)
                      ++..+...|++++++..+++.+...|+ ...+..||.++...+.+++|.+.|..++.++|++..+.-.+
T Consensus       444 ~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl  511 (564)
T KOG1174|consen  444 IAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL  511 (564)
T ss_pred             HHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence            999999999999999999999999988 45899999999999999999999999999999987665443

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.91  E-value=9.7e-21  Score=202.46  Aligned_cols=434  Identities=16%  Similarity=0.123  Sum_probs=324.0

Q ss_pred             HHHhcCCHHHHHHHHHHHHhh-----CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002729            8 QMYKSGSYKQALEHSNSVYER-----NPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD   82 (887)
Q Consensus         8 ~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~   82 (887)
                      .+.-..+.++++-..-.++..     -.+++..|-.+...+...|+++.+.+.|++++...-...+.|+.++.+|...|.
T Consensus       293 s~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~  372 (799)
T KOG4162|consen  293 SLIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGS  372 (799)
T ss_pred             hccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhcc
Confidence            334445555665444333321     235677888888888999999999999999988877788899999999999999


Q ss_pred             HHHHHHHHHHHHhcC--CCcHHHHHHHHHHHH-HcCChHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcC-----
Q 002729           83 IDLAIRYYLVAIELR--PNFADAWSNLASAYM-RKGRLNEAAQCCRQALALN-----PLLVDAHSNLGNLMKAQG-----  149 (887)
Q Consensus        83 ~~~A~~~~~~al~~~--p~~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~-----p~~~~~~~~la~~~~~~g-----  149 (887)
                      -..|+...++.+...  |+++..+...+..+. +.+..++++.+..+++...     --.+..+..+|.+|..+-     
T Consensus       373 ~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~  452 (799)
T KOG4162|consen  373 DSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANL  452 (799)
T ss_pred             chHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCC
Confidence            999999999998887  777766666655554 5688999999999998742     223456777777765432     


Q ss_pred             ------ChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCChHHH
Q 002729          150 ------LVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL-KPTFPDAYLNLGNVYKALGMPQEA  222 (887)
Q Consensus       150 ------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~l~~~~~~~g~~~~A  222 (887)
                            ...++++.++++++.+|+|+.+.+.++.-|..+++.+.|....+++++. ..+++..|..++.++...+++.+|
T Consensus       453 ~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~A  532 (799)
T KOG4162|consen  453 KSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEA  532 (799)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHH
Confidence                  2467888899999999999999999999999999999999999999998 556678999999999999999999


Q ss_pred             HHHHHHHHhhCCC-hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHH---------HHHHHHHHcCCHHHHHHH
Q 002729          223 IMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYN---------NLGNALKDVGRVDEAIQC  292 (887)
Q Consensus       223 ~~~~~~~~~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~---------~la~~~~~~g~~~~A~~~  292 (887)
                      +.+.+.+++..++ .........+-...++.++|+..+...+..-.....+..         ..+.......+..+|.+.
T Consensus       533 l~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~  612 (799)
T KOG4162|consen  533 LDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAIST  612 (799)
T ss_pred             HHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchh
Confidence            9999999887776 333444455555678888888887777643221111111         111111222233334333


Q ss_pred             HHHHHhc---------------------CCCC-----hHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHH
Q 002729          293 YNQCLSL---------------------QPSH-----PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAV  346 (887)
Q Consensus       293 ~~~al~~---------------------~p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~  346 (887)
                      .+++...                     .|+.     ...|...+..+.+.++.++|..++.++....|..+..|+..|.
T Consensus       613 sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~  692 (799)
T KOG4162|consen  613 SRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGL  692 (799)
T ss_pred             hHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhH
Confidence            3333221                     1111     2356677788888888888888888888888888888888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHhcCCCcHHHHHHHHHHHHhCCCHHH
Q 002729          347 IYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQ--DYIRAITIRPTMAEAHANLASAYKDSGHVEA  424 (887)
Q Consensus       347 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  424 (887)
                      .+...|+.++|.+.|..++.++|+++.+...+|.++.+.|+..-|.+  .+..+++++|.+.++|+.+|.++.+.|+.++
T Consensus       693 ~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~  772 (799)
T KOG4162|consen  693 LLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQ  772 (799)
T ss_pred             HHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHH
Confidence            88888888888888888888888888888888888888888777777  8888888888888888888888888888888


Q ss_pred             HHHHHHHHHHcCCCChH
Q 002729          425 AIKSYKQALLLRPDFPE  441 (887)
Q Consensus       425 A~~~~~~al~~~p~~~~  441 (887)
                      |.++|..++++.+.+|.
T Consensus       773 Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  773 AAECFQAALQLEESNPV  789 (799)
T ss_pred             HHHHHHHHHhhccCCCc
Confidence            88888888888877664

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.90  E-value=9.5e-21  Score=183.04  Aligned_cols=338  Identities=19%  Similarity=0.236  Sum_probs=196.9

Q ss_pred             CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 002729           31 LRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASA  110 (887)
Q Consensus        31 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  110 (887)
                      .+.+-.+.+|..++..|++..|+..|..+++.+|++..+++..|.+|...|+-..|+..+.+++++.|+...+....|.+
T Consensus        36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~v  115 (504)
T KOG0624|consen   36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVV  115 (504)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchh
Confidence            34445555566666666666666666666666666666666666666666666666666666666666555555555666


Q ss_pred             HHHcCChHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHH
Q 002729          111 YMRKGRLNEAAQCCRQALALNPLLVD---AHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNR  187 (887)
Q Consensus       111 ~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  187 (887)
                      +.++|++++|..-|+.+++.+|++..   ++..++.+-.                      -..+......+...|+...
T Consensus       116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e----------------------~~~l~~ql~s~~~~GD~~~  173 (504)
T KOG0624|consen  116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQE----------------------HWVLVQQLKSASGSGDCQN  173 (504)
T ss_pred             hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHH----------------------HHHHHHHHHHHhcCCchhh
Confidence            66666666666666666555553321   1111111100                      0011122223344566666


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHhhHHHHHHHcCChHHHHHHHHHHHhcC
Q 002729          188 ALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCD  266 (887)
Q Consensus       188 A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~  266 (887)
                      |+.+...++++.|-+...+...+.+|...|+...|+.-+..+-++..+ .+.++.++..++..|+.+.++...++.++++
T Consensus       174 ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld  253 (504)
T KOG0624|consen  174 AIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD  253 (504)
T ss_pred             HHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC
Confidence            666666666666666666666666666666666666666666555444 5566666666666666666666666666666


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchh----Hh
Q 002729          267 PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAP----FN  342 (887)
Q Consensus       267 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~  342 (887)
                      |+.-..+-.    |.+..+..+.++..+                  ...+.++|.++++..++.++.+|..+..    +.
T Consensus       254 pdHK~Cf~~----YKklkKv~K~les~e------------------~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r  311 (504)
T KOG0624|consen  254 PDHKLCFPF----YKKLKKVVKSLESAE------------------QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFR  311 (504)
T ss_pred             cchhhHHHH----HHHHHHHHHHHHHHH------------------HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeh
Confidence            654422211    111112222222211                  2234456666677777777776663332    33


Q ss_pred             hHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 002729          343 NLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANL  412 (887)
Q Consensus       343 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  412 (887)
                      .+..++..-+++.+|+....++++.+|++.+++...+.+|.....|++|+..|+++.+.++++..+...+
T Consensus       312 ~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGl  381 (504)
T KOG0624|consen  312 VLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGL  381 (504)
T ss_pred             eeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence            4566677777888888888888888888888888888888888888888888888888887776554433

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=4e-21  Score=197.99  Aligned_cols=412  Identities=21%  Similarity=0.242  Sum_probs=314.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002729           36 LLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKG  115 (887)
Q Consensus        36 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  115 (887)
                      ....|+..+..|+|+.|+.+|.+++.++|.+...|.+...+|..+|+|++|++.-.+..+++|+-+..|..+|..+.-.|
T Consensus         5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg   84 (539)
T KOG0548|consen    5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG   84 (539)
T ss_pred             HHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc
Confidence            34568889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHc-CCHHHHHHHHHH
Q 002729          116 RLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMES-GDLNRALQYYKE  194 (887)
Q Consensus       116 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~  194 (887)
                      +|++|+..|.+.++.+|++......++.++..  ++.. .+.|        ..+..|..+...-... -..+.+.....+
T Consensus        85 ~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~--~~~~-~~~~--------~~p~~~~~l~~~p~t~~~~~~~~~~~~l~  153 (539)
T KOG0548|consen   85 DYEEAILAYSEGLEKDPSNKQLKTGLAQAYLE--DYAA-DQLF--------TKPYFHEKLANLPLTNYSLSDPAYVKILE  153 (539)
T ss_pred             cHHHHHHHHHHHhhcCCchHHHHHhHHHhhhH--HHHh-hhhc--------cCcHHHHHhhcChhhhhhhccHHHHHHHH
Confidence            99999999999999999999999998888721  1111 1111        1122222222111111 011223333333


Q ss_pred             HHhhCCCCHHHHH-------HHHHHHHHcCCh-HHHHHHH---------HHHHhhCC-------------ChhHHhhHHH
Q 002729          195 AVKLKPTFPDAYL-------NLGNVYKALGMP-QEAIMCY---------QRAVQTRP-------------NAIAFGNLAS  244 (887)
Q Consensus       195 ~l~~~~~~~~~~~-------~l~~~~~~~g~~-~~A~~~~---------~~~~~~~p-------------~~~~~~~la~  244 (887)
                      .+..+|.+...+.       .++.+.. .+.. ..+....         .+.....|             .......+|.
T Consensus       154 ~~~~~p~~l~~~l~d~r~m~a~~~l~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgn  232 (539)
T KOG0548|consen  154 IIQKNPTSLKLYLNDPRLMKADGQLKG-VDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGN  232 (539)
T ss_pred             HhhcCcHhhhcccccHHHHHHHHHHhc-CccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHH
Confidence            3333443322211       1111110 0000 0000000         00000000             1234567899


Q ss_pred             HHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------hHHHHhHHHHHHHc
Q 002729          245 TYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH-------PQALTNLGNIYMEW  317 (887)
Q Consensus       245 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~  317 (887)
                      ..++..+++.|++.|.+++.++ .+...+.+.+.++...|.+.+.+....++++..-..       ......+|..|.+.
T Consensus       233 aaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~  311 (539)
T KOG0548|consen  233 AAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKR  311 (539)
T ss_pred             HHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence            9999999999999999999999 888888999999999999999999998888765432       22344567788889


Q ss_pred             CChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002729          318 NMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIR  397 (887)
Q Consensus       318 g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  397 (887)
                      ++++.|+.+|++++.....        ..+..+....+++++..+...-.+|.-..--...|..+++.|+|.+|+..|.+
T Consensus       312 ~~~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte  383 (539)
T KOG0548|consen  312 EDYEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE  383 (539)
T ss_pred             HhHHHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            9999999999998876543        56667778888999988888888998888888889999999999999999999


Q ss_pred             HHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHhhhcCChhhHhHHHHHHHH
Q 002729          398 AITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEG  468 (887)
Q Consensus       398 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  468 (887)
                      +++.+|+++..|.+.+.||.++|++..|++..+++++++|++..++..-+.++..+.+|..+.+.|.+..+
T Consensus       384 AIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale  454 (539)
T KOG0548|consen  384 AIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE  454 (539)
T ss_pred             HHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999888888888888887766

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.90  E-value=2.3e-20  Score=199.58  Aligned_cols=403  Identities=16%  Similarity=0.111  Sum_probs=338.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHH-HHHHc
Q 002729            4 ALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLE--PRFAECYGNMAN-AWKEK   80 (887)
Q Consensus         4 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~-~~~~~   80 (887)
                      .+...+...|+++.+.+.|++++...-...+.|+.++.++...|.-..|+.++++.....  |++...+...+. |+.+.
T Consensus       328 ~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l  407 (799)
T KOG4162|consen  328 HLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERL  407 (799)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhch
Confidence            355677888999999999999988777788999999999999999999999999999888  777666665555 45567


Q ss_pred             CCHHHHHHHHHHHHhcCC-----CcHHHHHHHHHHHHHc-----------CChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002729           81 GDIDLAIRYYLVAIELRP-----NFADAWSNLASAYMRK-----------GRLNEAAQCCRQALALNPLLVDAHSNLGNL  144 (887)
Q Consensus        81 g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~~l~~~p~~~~~~~~la~~  144 (887)
                      +.+++++.+..+++....     -.+..+..+|.+|..+           ....++++.++++++.+|.|+.+.+.++.-
T Consensus       408 ~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq  487 (799)
T KOG4162|consen  408 KLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQ  487 (799)
T ss_pred             hhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence            999999999999998421     1355777777777543           235688999999999999999999999999


Q ss_pred             HHHcCChHHHHHHHHHHHhh-CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHH
Q 002729          145 MKAQGLVQEAYSCYLEALRI-QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAI  223 (887)
Q Consensus       145 ~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~  223 (887)
                      |..+++.+.|.....++++. ..+++.+|..++.++...+++.+|+.+.+.++...++|.........+-...++.++|+
T Consensus       488 ~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l  567 (799)
T KOG4162|consen  488 YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEAL  567 (799)
T ss_pred             HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHH
Confidence            99999999999999999999 56778999999999999999999999999999999998887777778888899999999


Q ss_pred             HHHHHHHhhCCC----------hhHHhhHHHHHHHcCChHHHHHHHHHHHhc---------------------CCCc---
Q 002729          224 MCYQRAVQTRPN----------AIAFGNLASTYYERGQADMAILYYKQAIGC---------------------DPRF---  269 (887)
Q Consensus       224 ~~~~~~~~~~p~----------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---------------------~p~~---  269 (887)
                      ..+...+.....          .......+......++..+|.+..+++...                     .|..   
T Consensus       568 ~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~  647 (799)
T KOG4162|consen  568 DTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWY  647 (799)
T ss_pred             HHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHH
Confidence            988887765331          111111122222223444444444443311                     1111   


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHH
Q 002729          270 --LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVI  347 (887)
Q Consensus       270 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~  347 (887)
                        ...|...+..+...++.++|..++.++..++|..+..++..|.++...|+.++|.+.|..++..+|+++.+...+|.+
T Consensus       648 ~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~  727 (799)
T KOG4162|consen  648 LLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAEL  727 (799)
T ss_pred             HHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence              245778889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHH--HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 002729          348 YKQQGNYADAIS--CYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMA  406 (887)
Q Consensus       348 ~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  406 (887)
                      +.+.|+..-|..  ++..+++++|.++++|+.+|.++.+.|+.++|.++|+.++++.+.+|
T Consensus       728 lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  728 LLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP  788 (799)
T ss_pred             HHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence            999998888888  99999999999999999999999999999999999999999987765

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=7.7e-18  Score=169.80  Aligned_cols=445  Identities=16%  Similarity=0.140  Sum_probs=371.6

Q ss_pred             hHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002729            3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD   82 (887)
Q Consensus         3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~   82 (887)
                      +.-|+--..++++..|..+|++++..+..+...|...+.+-++.+....|..++++++..-|.-...|+....+-..+|+
T Consensus        77 ikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgN  156 (677)
T KOG1915|consen   77 IKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGN  156 (677)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcc
Confidence            34455566788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002729           83 IDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEAL  162 (887)
Q Consensus        83 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  162 (887)
                      ...|.++|++-++..|+ ..+|......-.+.++.+.|..+|++.+-.+|+ ...|...+..-.+.|+..-|...|++++
T Consensus       157 i~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE~k~g~~~~aR~VyerAi  234 (677)
T KOG1915|consen  157 IAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGNVALARSVYERAI  234 (677)
T ss_pred             cHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            99999999999999988 779999999999999999999999999888864 6788999999999999999999999999


Q ss_pred             hhCCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCChH---HHH-----HHHHHH
Q 002729          163 RIQPTF---AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF--PDAYLNLGNVYKALGMPQ---EAI-----MCYQRA  229 (887)
Q Consensus       163 ~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~l~~~~~~~g~~~---~A~-----~~~~~~  229 (887)
                      +...++   ...+...+..-..+..++.|..+|+-+++.-|.+  ...+..+...-.+-|+..   +++     --|++.
T Consensus       235 e~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~  314 (677)
T KOG1915|consen  235 EFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKE  314 (677)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHH
Confidence            875443   3345566777777889999999999999988887  445555544444556543   332     246677


Q ss_pred             HhhCCC-hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHH---------HHHHHHH-HHHHcCCHHHHHHHHHHHHh
Q 002729          230 VQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLE---------AYNNLGN-ALKDVGRVDEAIQCYNQCLS  298 (887)
Q Consensus       230 ~~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---------~~~~la~-~~~~~g~~~~A~~~~~~al~  298 (887)
                      ++.+|. -.+|+.........|+.+.-.+.|++++...|...+         .|.+.+. .-....+.+.+.++|+.+++
T Consensus       315 v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~  394 (677)
T KOG1915|consen  315 VSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD  394 (677)
T ss_pred             HHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            777886 788998888888999999999999999976665322         2222221 12456889999999999999


Q ss_pred             cCCCC----hHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 002729          299 LQPSH----PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADG  374 (887)
Q Consensus       299 ~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  374 (887)
                      +-|..    ..+|...+....++.+...|.+.+-.++...|.+. .+.....+-.+.++++...++|++.++..|.+..+
T Consensus       395 lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K-lFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~  473 (677)
T KOG1915|consen  395 LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK-LFKGYIELELQLREFDRCRKLYEKFLEFSPENCYA  473 (677)
T ss_pred             hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh-HHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHH
Confidence            98764    56888888889999999999999999999998754 45667777888999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHhh
Q 002729          375 LVNRGNTYKEIGRVTDAIQDYIRAITIRPTM--AEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ  451 (887)
Q Consensus       375 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  451 (887)
                      |...|..-..+|+.+.|...|+-|++...-+  ...|......-...|.+++|..+|++.++..+... +|...+..-.
T Consensus       474 W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~  551 (677)
T KOG1915|consen  474 WSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFEA  551 (677)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHhc
Confidence            9999999999999999999999999875332  34677788888889999999999999999988776 7777666544

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.89  E-value=6.2e-19  Score=185.12  Aligned_cols=466  Identities=16%  Similarity=0.157  Sum_probs=344.6

Q ss_pred             hhHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002729            2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG   81 (887)
Q Consensus         2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g   81 (887)
                      +|..+...+..++|.+.++..+.+++..|.+.+.+...|..+..+|+-++|......++..++.+..+|..+|.++....
T Consensus        10 lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK   89 (700)
T KOG1156|consen   10 LFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK   89 (700)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhh
Confidence            56778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002729           82 DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEA  161 (887)
Q Consensus        82 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  161 (887)
                      +|++|+++|+.|+..+|+|...|..++....++++++-....-.+.++..|..-..|...+..+.-.|++..|....+..
T Consensus        90 ~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef  169 (700)
T KOG1156|consen   90 KYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEF  169 (700)
T ss_pred             hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988877


Q ss_pred             HhhC---CCh-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 002729          162 LRIQ---PTF-----AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR  233 (887)
Q Consensus       162 l~~~---p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  233 (887)
                      .+..   |..     ............+.|..++|.+.+.+--..--+........+.++.+++++++|...|...+..+
T Consensus       170 ~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn  249 (700)
T KOG1156|consen  170 EKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN  249 (700)
T ss_pred             HHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC
Confidence            7654   322     23444455667778888888877766544333444466677899999999999999999999999


Q ss_pred             CChhH-HhhHHHHHHHcCChHHHH-HHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCChHHHHhH
Q 002729          234 PNAIA-FGNLASTYYERGQADMAI-LYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAI-QCYNQCLSLQPSHPQALTNL  310 (887)
Q Consensus       234 p~~~~-~~~la~~~~~~g~~~~A~-~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~l  310 (887)
                      |+... +..+-.++..-.+--+++ ..|...-+..|... .-..++.....-.++.+.. +++...++..  -+.+...+
T Consensus       250 Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e-~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg--~p~vf~dl  326 (700)
T KOG1156|consen  250 PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHE-CPRRLPLSVLNGEELKEIVDKYLRPLLSKG--VPSVFKDL  326 (700)
T ss_pred             chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccc-cchhccHHHhCcchhHHHHHHHHHHHhhcC--CCchhhhh
Confidence            99444 444444443333333444 45555444444332 2223333222222333222 2333333321  12222233


Q ss_pred             HHHHHHcCCh---hHHHHHHHHHHhcc------------CCCchh--HhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 002729          311 GNIYMEWNML---PAAASYYKATLAVT------------TGLSAP--FNNLAVIYKQQGNYADAISCYNEVLRIDPLAAD  373 (887)
Q Consensus       311 ~~~~~~~g~~---~~A~~~~~~~~~~~------------~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  373 (887)
                      -..|..-.+.   ++-...|...+.-.            |..+.+  ++.++.-+...|+++.|..+++.++...|..++
T Consensus       327 ~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliE  406 (700)
T KOG1156|consen  327 RSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIE  406 (700)
T ss_pred             HHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHH
Confidence            3333221111   11111111111111            222222  456788889999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHHHHH-------
Q 002729          374 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL-------  446 (887)
Q Consensus       374 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------  446 (887)
                      .+...|+++...|++++|...+..+.+++-.|..+...-|....+.++.++|.+...+.-..+-   .+..+|       
T Consensus       407 ly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~---~~~~~L~~mqcmW  483 (700)
T KOG1156|consen  407 LYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF---GAVNNLAEMQCMW  483 (700)
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc---chhhhHHHhhhHH
Confidence            9999999999999999999999999999987777777889999999999999999887665443   222222       


Q ss_pred             -----HHHhhhcCChhhHhHHHHHHHHHHHHH
Q 002729          447 -----LHTLQCVCSWEDRDRMFSEVEGIIRRQ  473 (887)
Q Consensus       447 -----~~~~~~~g~~~~a~~~~~~~~~~~~~~  473 (887)
                           +.+|..+++|..|.+.|..+...+.+-
T Consensus       484 f~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~  515 (700)
T KOG1156|consen  484 FQLEDGEAYLRQNKLGLALKKFHEIEKHYKTW  515 (700)
T ss_pred             HhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence                 345666777878877777777766553

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=6.8e-19  Score=174.47  Aligned_cols=407  Identities=15%  Similarity=0.083  Sum_probs=319.8

Q ss_pred             hHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002729            3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD   82 (887)
Q Consensus         3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~   82 (887)
                      ...+.++-..++-+.|+..+.++.... ..+..-..++..+-.-++-.++.-.+...+...|--......+...-.  +-
T Consensus       101 r~~aecy~~~~n~~~Ai~~l~~~p~t~-r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v--~g  177 (564)
T KOG1174|consen  101 RRAAECYRQIGNTDMAIETLLQVPPTL-RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGV--NG  177 (564)
T ss_pred             HHHHHHHHHHccchHHHHHHhcCCccc-cchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhh--cc
Confidence            346778888889899988877765432 245555566666655555556666666666655532222222211111  11


Q ss_pred             HHHHHHHHHHHHhcCCCcHHHH---HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 002729           83 IDLAIRYYLVAIELRPNFADAW---SNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYL  159 (887)
Q Consensus        83 ~~~A~~~~~~al~~~p~~~~~~---~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  159 (887)
                      ++.+- .-...+...|..+..|   ..++.++.-...+.-+..++-.-...-|++...+..+|.++...|++++|+..|+
T Consensus       178 ~e~~S-~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe  256 (564)
T KOG1174|consen  178 NEINS-LVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFS  256 (564)
T ss_pred             hhhhh-hhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHH
Confidence            11111 1112233344444332   2344444444445555556666667779999999999999999999999999999


Q ss_pred             HHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhH
Q 002729          160 EALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIA  238 (887)
Q Consensus       160 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~  238 (887)
                      ++.-.+|.+....-..+.++...|+++.-..+....+........-|+--+...+..++++.|+.+-+++++.+|. ..+
T Consensus       257 ~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~a  336 (564)
T KOG1174|consen  257 STLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEA  336 (564)
T ss_pred             HHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchH
Confidence            9999999999999999999999999999999888888887777778888888889999999999999999999888 889


Q ss_pred             HhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHH-HHHH-H
Q 002729          239 FGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLG-NIYM-E  316 (887)
Q Consensus       239 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~-~~~~-~  316 (887)
                      +...|..+...++.++|+-.|+.+..+.|...+.|..+..+|...|++.||...-+.+++..|.+..++..+| .++. .
T Consensus       337 lilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~d  416 (564)
T KOG1174|consen  337 LILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPD  416 (564)
T ss_pred             HHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998886 4433 3


Q ss_pred             cCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002729          317 WNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYI  396 (887)
Q Consensus       317 ~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  396 (887)
                      ..--++|.+++++.+.+.|....+-..++.++...|++++++.++++.+...|+ ...+..+|.++...+.+.+|++.|.
T Consensus       417 p~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~  495 (564)
T KOG1174|consen  417 PRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYY  495 (564)
T ss_pred             chhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            445688999999999999999999999999999999999999999999998765 4578899999999999999999999


Q ss_pred             HHHhcCCCcHHHHHHHHH
Q 002729          397 RAITIRPTMAEAHANLAS  414 (887)
Q Consensus       397 ~al~~~p~~~~~~~~la~  414 (887)
                      .++.++|++..+...+-.
T Consensus       496 ~ALr~dP~~~~sl~Gl~~  513 (564)
T KOG1174|consen  496 KALRQDPKSKRTLRGLRL  513 (564)
T ss_pred             HHHhcCccchHHHHHHHH
Confidence            999999998766555433

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.87  E-value=6.5e-19  Score=192.26  Aligned_cols=464  Identities=15%  Similarity=0.185  Sum_probs=369.5

Q ss_pred             cCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002729           12 SGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYL   91 (887)
Q Consensus        12 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~   91 (887)
                      .++...|...|-++++.++.-..++..+|.+|...-+...|.+.|+++.++++.+..+.-..+..|.+..+++.|....-
T Consensus       471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l  550 (1238)
T KOG1127|consen  471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL  550 (1238)
T ss_pred             hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence            34578899999999999999999999999999998899999999999999999999999999999999999999999876


Q ss_pred             HHHhcCCC--cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChH
Q 002729           92 VAIELRPN--FADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFA  169 (887)
Q Consensus        92 ~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  169 (887)
                      .+-+..|.  ....|..+|-.|.+.++..+|+..|+.+++.+|++...|..+|.+|...|++..|++.|.++..++|.+.
T Consensus       551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~  630 (1238)
T KOG1127|consen  551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK  630 (1238)
T ss_pred             HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence            66666654  2345667899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---------
Q 002729          170 IAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF-------PDAYLNLGNVYKALGMPQEAIMCYQRAVQTR---------  233 (887)
Q Consensus       170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------  233 (887)
                      ...+..+.+.+..|+|.+|+..+...+......       .+.+...+..+...|-..+|...+++.++..         
T Consensus       631 y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~  710 (1238)
T KOG1127|consen  631 YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQ  710 (1238)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhh
Confidence            999999999999999999999999887754332       3455555666666677777777777766531         


Q ss_pred             CChhHHhhHHHHHH---HcC--------------------Ch---H---HHHHHHHHHHhcCCCcHHHHHHHHHHHHH--
Q 002729          234 PNAIAFGNLASTYY---ERG--------------------QA---D---MAILYYKQAIGCDPRFLEAYNNLGNALKD--  282 (887)
Q Consensus       234 p~~~~~~~la~~~~---~~g--------------------~~---~---~A~~~~~~~l~~~p~~~~~~~~la~~~~~--  282 (887)
                      .+...|..++..+.   ...                    ..   +   -+.+++-..++.-. .+..|+++|..|..  
T Consensus       711 ~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~-~~~~WyNLGinylr~f  789 (1238)
T KOG1127|consen  711 SDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAI-HMYPWYNLGINYLRYF  789 (1238)
T ss_pred             hhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhh-ccchHHHHhHHHHHHH
Confidence            11223333322221   111                    00   1   12222222222111 13468888877766  


Q ss_pred             ------cCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHH
Q 002729          283 ------VGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYAD  356 (887)
Q Consensus       283 ------~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  356 (887)
                            ..+...|+.++++++++..++...|+.||.+ ...|++.-|..+|-+.....|.+...|.++|.++.++.+++.
T Consensus       790 ~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~  868 (1238)
T KOG1127|consen  790 LLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEH  868 (1238)
T ss_pred             HHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHH
Confidence                  2344589999999999999999999999988 777999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHHhCCCHHHHHHH---
Q 002729          357 AISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT-----MAEAHANLASAYKDSGHVEAAIKS---  428 (887)
Q Consensus       357 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~---  428 (887)
                      |...|.++..++|.+...|...+.+....|+.-++...|....+....     ....|..-......+|++++-+..   
T Consensus       869 A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~k  948 (1238)
T KOG1127|consen  869 AEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARK  948 (1238)
T ss_pred             hhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhh
Confidence            999999999999999999999999999999999999999885444321     233444555556667776665544   


Q ss_pred             -------HHHHHHcCCCChHHHHHHHHHhhhcCChhhHhHHHHHHHHHHHHHhccC
Q 002729          429 -------YKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMS  477 (887)
Q Consensus       429 -------~~~al~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  477 (887)
                             .++.+...|++..++...+.+....+.+.++.....++..+++.....+
T Consensus       949 i~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~s 1004 (1238)
T KOG1127|consen  949 ISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDES 1004 (1238)
T ss_pred             hhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence                   4555667899999988888888888889999999989888888766553

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.86  E-value=1.6e-21  Score=203.45  Aligned_cols=259  Identities=22%  Similarity=0.306  Sum_probs=80.9

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHhh--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 002729          140 NLGNLMKAQGLVQEAYSCYLEALRI--QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG  217 (887)
Q Consensus       140 ~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g  217 (887)
                      .++.++...|++++|++++.+....  .|++...|..++.+....+++++|+..|++++..++.++..+..++.+ ...+
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~   91 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG   91 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence            4466666666666666666444332  355666666666666666666666666666666666666666666655 5666


Q ss_pred             ChHHHHHHHHHHHhhCCChhHHhhHHHHHHHcCChHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002729          218 MPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCD--PRFLEAYNNLGNALKDVGRVDEAIQCYNQ  295 (887)
Q Consensus       218 ~~~~A~~~~~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~  295 (887)
                      ++++|.+++++..+..++...+...+.++...++++++...++++....  +.+...|..+|.++.+.|+.++|+..+++
T Consensus        92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~  171 (280)
T PF13429_consen   92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK  171 (280)
T ss_dssp             --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            6666666666666555555555555556666666666666666655332  45555666666666666666666666666


Q ss_pred             HHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 002729          296 CLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGL  375 (887)
Q Consensus       296 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  375 (887)
                      +++.+|+++.+...++.++...|+.+++...++......|.++..+..+|.++...|++++|+.+|+++++.+|+++..+
T Consensus       172 al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~  251 (280)
T PF13429_consen  172 ALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWL  251 (280)
T ss_dssp             HHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHH
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccc
Confidence            66666666666666666666666666655555555555555555555556666666666666666666665556555555


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH
Q 002729          376 VNRGNTYKEIGRVTDAIQDYIRAI  399 (887)
Q Consensus       376 ~~l~~~~~~~g~~~~A~~~~~~al  399 (887)
                      ..+|.++...|+.++|..++.+++
T Consensus       252 ~~~a~~l~~~g~~~~A~~~~~~~~  275 (280)
T PF13429_consen  252 LAYADALEQAGRKDEALRLRRQAL  275 (280)
T ss_dssp             HHHHHHHT----------------
T ss_pred             cccccccccccccccccccccccc
Confidence            555555555555555555555544

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=1e-16  Score=161.80  Aligned_cols=446  Identities=13%  Similarity=0.125  Sum_probs=368.7

Q ss_pred             HHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002729           20 EHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPN   99 (887)
Q Consensus        20 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~   99 (887)
                      +.|+..+..+--+...|...|.--..++++..|..+|++++..+..+...|...+.+-++......|..++++++..-|.
T Consensus        60 kefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR  139 (677)
T KOG1915|consen   60 KEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR  139 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch
Confidence            34555566666677889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 002729          100 FADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLF  179 (887)
Q Consensus       100 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  179 (887)
                      -...|+....+-..+|+..-|.++|++.++..|+ ..+|......-.+.++.+.|..+|++.+-.+|+ ...|...+..-
T Consensus       140 VdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE  217 (677)
T KOG1915|consen  140 VDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFE  217 (677)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHH
Confidence            8999999999999999999999999999999885 578888889999999999999999999988865 57789999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---hhHHhhHHHHHHHcCCh-
Q 002729          180 MESGDLNRALQYYKEAVKLKPTFPD---AYLNLGNVYKALGMPQEAIMCYQRAVQTRPN---AIAFGNLASTYYERGQA-  252 (887)
Q Consensus       180 ~~~g~~~~A~~~~~~~l~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~la~~~~~~g~~-  252 (887)
                      .+.|+..-|...|+++++.-.++..   .+...+..-..++.++.|..+|+-++..-|.   ...+......--+-|+. 
T Consensus       218 ~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~  297 (677)
T KOG1915|consen  218 EKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKE  297 (677)
T ss_pred             HhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchh
Confidence            9999999999999999987655432   5666777778889999999999999998887   33333444333444553 


Q ss_pred             --HHHH-----HHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH---------HHHhHHH-HHH
Q 002729          253 --DMAI-----LYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQ---------ALTNLGN-IYM  315 (887)
Q Consensus       253 --~~A~-----~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~l~~-~~~  315 (887)
                        ++++     --|++.+..+|.+.++|+.+..+....|+.+.-.+.|++++..-|...+         .|.+.+. .-.
T Consensus       298 gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEl  377 (677)
T KOG1915|consen  298 GIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEEL  377 (677)
T ss_pred             hhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence              3333     2467777889999999999999999999999999999999998776432         2222221 123


Q ss_pred             HcCChhHHHHHHHHHHhccCCC----chhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 002729          316 EWNMLPAAASYYKATLAVTTGL----SAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDA  391 (887)
Q Consensus       316 ~~g~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  391 (887)
                      ...+.+.+.+.|+.++++-|..    +..|...+....++.+...|.+.+-.++-..|.+ ..+-....+-.++++++..
T Consensus       378 e~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRc  456 (677)
T KOG1915|consen  378 EAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRC  456 (677)
T ss_pred             HhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHH
Confidence            5789999999999999998874    5568888888899999999999999999998875 3455556677889999999


Q ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-Ch-HHHHHHHHHhhhcCChhhHhHHHHHHHH
Q 002729          392 IQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD-FP-EATCNLLHTLQCVCSWEDRDRMFSEVEG  468 (887)
Q Consensus       392 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~  468 (887)
                      .+.|++-++..|.+..+|...|.+-..+|+.+.|..+|+-|++...- -| ..|-..+..-...|.++.+..+++++.+
T Consensus       457 RkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~  535 (677)
T KOG1915|consen  457 RKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD  535 (677)
T ss_pred             HHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999986432 22 2344455555566667777776666655

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.86  E-value=1.6e-18  Score=189.34  Aligned_cols=458  Identities=15%  Similarity=0.129  Sum_probs=358.6

Q ss_pred             hHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHc
Q 002729            3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF--AECYGNMANAWKEK   80 (887)
Q Consensus         3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~   80 (887)
                      -.+|..|...-+...|.+.|.++.+.++.+.+++-..+..|.+..+++.|..+...+-+..|..  ...|..+|-.|.+.
T Consensus       496 ~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea  575 (1238)
T KOG1127|consen  496 AFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEA  575 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCc
Confidence            3577777777789999999999999999999999999999999999999999977776666643  45677799999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 002729           81 GDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLE  160 (887)
Q Consensus        81 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  160 (887)
                      ++..+|+..|+.++..+|++..+|..+|.+|...|++..|++.|.++..++|.+....+..+.+.+..|+|++|+..+..
T Consensus       576 ~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~  655 (1238)
T KOG1127|consen  576 HNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGL  655 (1238)
T ss_pred             cchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHhhCCCh-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------C-CCCHHHHHHHHHHH------------
Q 002729          161 ALRIQPTF-------AIAWSNLAGLFMESGDLNRALQYYKEAVKL-------K-PTFPDAYLNLGNVY------------  213 (887)
Q Consensus       161 al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-------~-~~~~~~~~~l~~~~------------  213 (887)
                      .+......       .+.+...+..+...|-..+|..++++.++.       . .++...|..++...            
T Consensus       656 ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn  735 (1238)
T KOG1127|consen  656 IIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVN  735 (1238)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchH
Confidence            88764433       444555555555566666676666666542       1 12222222222211            


Q ss_pred             -------HH----cCCh------HHHHHHHHHHHhhCCChhHHhhHHHHHHH--------cCChHHHHHHHHHHHhcCCC
Q 002729          214 -------KA----LGMP------QEAIMCYQRAVQTRPNAIAFGNLASTYYE--------RGQADMAILYYKQAIGCDPR  268 (887)
Q Consensus       214 -------~~----~g~~------~~A~~~~~~~~~~~p~~~~~~~la~~~~~--------~g~~~~A~~~~~~~l~~~p~  268 (887)
                             ..    .+..      --+.+++-..++.......|+++|..|+.        ..+-..|+.++.++++...+
T Consensus       736 ~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~an  815 (1238)
T KOG1127|consen  736 MHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCAN  815 (1238)
T ss_pred             HHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhc
Confidence                   11    1111      12333333334433346778888888776        23345799999999999999


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHH
Q 002729          269 FLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIY  348 (887)
Q Consensus       269 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  348 (887)
                      +...|+.||.+ ...|++.-|.-+|-+.+..+|.+...|.++|.++.+..+++.|...|.++..++|.+...|...+.+.
T Consensus       816 n~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~  894 (1238)
T KOG1127|consen  816 NEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIP  894 (1238)
T ss_pred             cHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhH
Confidence            99999999988 66699999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHcCCHHHHHHHH----------HHHHhcCCCcHHHHHHHH
Q 002729          349 KQQGNYADAISCYNEVLRIDPL-----AADGLVNRGNTYKEIGRVTDAIQDY----------IRAITIRPTMAEAHANLA  413 (887)
Q Consensus       349 ~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~----------~~al~~~p~~~~~~~~la  413 (887)
                      ...|+.-++...|....+++..     ....|..--......|++++-+...          ++.+...|+...++...|
T Consensus       895 eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~g  974 (1238)
T KOG1127|consen  895 EAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANG  974 (1238)
T ss_pred             HHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHH
Confidence            9999999999999885444321     2234444455556666666655543          444556799999999999


Q ss_pred             HHHHhCCCHHHHHHHHHHHHHc------CCCChHHHHHHHHHhhhcCChhhHhH
Q 002729          414 SAYKDSGHVEAAIKSYKQALLL------RPDFPEATCNLLHTLQCVCSWEDRDR  461 (887)
Q Consensus       414 ~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~g~~~~a~~  461 (887)
                      .....++.+.+|.+.+.+++.+      ...++.+.-++...+...|.++.|..
T Consensus       975 stlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~ 1028 (1238)
T KOG1127|consen  975 STLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKK 1028 (1238)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhh
Confidence            9999999999999988887653      12233355556666777777665543

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.85  E-value=9.7e-19  Score=168.20  Aligned_cols=269  Identities=23%  Similarity=0.263  Sum_probs=207.0

Q ss_pred             HHHHcCCHHHHHHHHHHHHhhC---CC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHhhHHHHHH
Q 002729          178 LFMESGDLNRALQYYKEAVKLK---PT-------FPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYY  247 (887)
Q Consensus       178 ~~~~~g~~~~A~~~~~~~l~~~---~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~la~~~~  247 (887)
                      +++..++...|-......++..   |.       +......+|.+|.++|.+.+|.+.++..++..|..+++..++.+|.
T Consensus       188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~  267 (478)
T KOG1129|consen  188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQ  267 (478)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHH
Confidence            4555566666665554444321   11       1123356788888888888888888888888888888888888888


Q ss_pred             HcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHH
Q 002729          248 ERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYY  327 (887)
Q Consensus       248 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  327 (887)
                      +..+...|+..+.+.++..|.+.......+.++..++++++|.++|+.+++.+|.+.++.-.++.-|.-.++.+-|+.+|
T Consensus       268 ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryY  347 (478)
T KOG1129|consen  268 RIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYY  347 (478)
T ss_pred             HhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHH
Confidence            88888888888888888888888777788888888888888888888888888888888777777888888888888888


Q ss_pred             HHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcC--C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002729          328 KATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRID--P-LAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT  404 (887)
Q Consensus       328 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  404 (887)
                      ++.++..-.+++.+.++|.++.-.++++-++..|++++...  | ...++|+++|.+....|++.-|..+|+-++..+++
T Consensus       348 RRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~  427 (478)
T KOG1129|consen  348 RRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ  427 (478)
T ss_pred             HHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc
Confidence            88888888888888888888888888888888888887653  2 33568888888888888888888888888888888


Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHHHHH
Q 002729          405 MAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL  446 (887)
Q Consensus       405 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  446 (887)
                      +.+++++|+.+-.+.|++++|..++..+-.+.|+-.+..+|+
T Consensus       428 h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl  469 (478)
T KOG1129|consen  428 HGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNL  469 (478)
T ss_pred             hHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccce
Confidence            888888888888888888888888888888887766666554

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.85  E-value=5e-21  Score=199.75  Aligned_cols=260  Identities=22%  Similarity=0.279  Sum_probs=107.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHhhHHHHHHHc
Q 002729          173 SNLAGLFMESGDLNRALQYYKEAVKL--KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYER  249 (887)
Q Consensus       173 ~~la~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~la~~~~~~  249 (887)
                      ..++.++...|++++|++.+.+....  .|+++..|..++.+....+++++|+..|++++...+. ...+..++.. ...
T Consensus        12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~   90 (280)
T PF13429_consen   12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQD   90 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence            36688888888888888888665443  3777788888888888888888888888888887666 5556666666 678


Q ss_pred             CChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChHHHHhHHHHHHHcCChhHHHHHH
Q 002729          250 GQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ--PSHPQALTNLGNIYMEWNMLPAAASYY  327 (887)
Q Consensus       250 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~  327 (887)
                      +++++|..++++..+..+ ++..+...+.++...++++++...++++....  +.++..+..+|.++.+.|+.++|+..|
T Consensus        91 ~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~  169 (280)
T PF13429_consen   91 GDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY  169 (280)
T ss_dssp             ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             cccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            888888888887776554 34566667777888888888888888866544  566778888888888888888888888


Q ss_pred             HHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 002729          328 KATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAE  407 (887)
Q Consensus       328 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  407 (887)
                      +++++.+|++..+...++.++...|+.+++.+.++...+..|.++..+..+|.++..+|++++|+.+|+++++.+|+++.
T Consensus       170 ~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~  249 (280)
T PF13429_consen  170 RKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL  249 (280)
T ss_dssp             HHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence            88888888888888888888888888888888888777777777778888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 002729          408 AHANLASAYKDSGHVEAAIKSYKQALL  434 (887)
Q Consensus       408 ~~~~la~~~~~~g~~~~A~~~~~~al~  434 (887)
                      ++..+|.++...|+.++|.++++++++
T Consensus       250 ~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  250 WLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             HHHHHHHHHT-----------------
T ss_pred             ccccccccccccccccccccccccccc
Confidence            888888888888888888888887765

>TIGR00540 hemY_coli hemY protein

Probab=99.85  E-value=5.1e-18  Score=186.24  Aligned_cols=300  Identities=13%  Similarity=0.028  Sum_probs=185.3

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChH-HHHHHHHHHHHHcC
Q 002729          105 SNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFA-IAWSNLAGLFMESG  183 (887)
Q Consensus       105 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g  183 (887)
                      ...|......|+++.|.+.+.++.+..|+....+...+.++..+|++++|.+++.++.+..|++. .+....+.++...|
T Consensus        88 ~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~  167 (409)
T TIGR00540        88 TEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQN  167 (409)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCC
Confidence            44455555666777777776666666666666666666666666777777777766666666654 34444566666666


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHhhHHHHHHHcCChHHHHHHHHHH
Q 002729          184 DLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQA  262 (887)
Q Consensus       184 ~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~~  262 (887)
                      ++++|...++++.+..|+++.++..++.++...|++++|.+.+.+..+.... ...+..+                    
T Consensus       168 ~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l--------------------  227 (409)
T TIGR00540       168 ELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADL--------------------  227 (409)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHH--------------------
Confidence            7777776666666666666666666666666666666666666666654221 1111000                    


Q ss_pred             HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----CChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCc
Q 002729          263 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP----SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLS  338 (887)
Q Consensus       263 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  338 (887)
                                .......+...+..+++.+.+.++.+..|    +++..+..++..+...|++++|.+.++++++..|++.
T Consensus       228 ----------~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~  297 (409)
T TIGR00540       228 ----------EQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDR  297 (409)
T ss_pred             ----------HHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcc
Confidence                      00001111111222223333334443333    3444555555555555555555555555555555444


Q ss_pred             hhH--hhHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHhcCCCcHHHHHHH
Q 002729          339 APF--NNLAVIYKQQGNYADAISCYNEVLRIDPLAA--DGLVNRGNTYKEIGRVTDAIQDYI--RAITIRPTMAEAHANL  412 (887)
Q Consensus       339 ~~~--~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~l  412 (887)
                      ...  ..........++.+++++.++++++..|+++  ..+..+|+++.+.|++++|.++|+  ++++..|++.. +..+
T Consensus       298 ~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~L  376 (409)
T TIGR00540       298 AISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMA  376 (409)
T ss_pred             cchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHH
Confidence            321  1112222334677888889999999999999  888899999999999999999999  57777887654 5589


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHHc
Q 002729          413 ASAYKDSGHVEAAIKSYKQALLL  435 (887)
Q Consensus       413 a~~~~~~g~~~~A~~~~~~al~~  435 (887)
                      |.++.+.|+.++|.++|++++..
T Consensus       377 a~ll~~~g~~~~A~~~~~~~l~~  399 (409)
T TIGR00540       377 ADAFDQAGDKAEAAAMRQDSLGL  399 (409)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHH
Confidence            99999999999999999987654

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>TIGR00540 hemY_coli hemY protein

Probab=99.84  E-value=6.3e-18  Score=185.51  Aligned_cols=299  Identities=11%  Similarity=-0.032  Sum_probs=234.8

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHH
Q 002729           34 DNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFA-DAWSNLASAYM  112 (887)
Q Consensus        34 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~  112 (887)
                      ......|......|+++.|.+.+.++.+..|.....+...|.++.+.|+++.|.+++.++.+..|++. .+....+.++.
T Consensus        85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l  164 (409)
T TIGR00540        85 QKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILL  164 (409)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHH
Confidence            34456677788888888888888888888887777788888888888888888888888888877764 45556688888


Q ss_pred             HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHH----HHHHHHHHcCCHHHH
Q 002729          113 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWS----NLAGLFMESGDLNRA  188 (887)
Q Consensus       113 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----~la~~~~~~g~~~~A  188 (887)
                      ..|++++|...++++.+..|+++.++..++.++...|++++|.+.+.+..+....+.....    .....+...+..+++
T Consensus       165 ~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~  244 (409)
T TIGR00540       165 AQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEG  244 (409)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            8888888888888888888888888888888888888888888888888876443333221    122222344444555


Q ss_pred             HHHHHHHHhhCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhH---HhhHHHHHHHcCChHHHHHHHHH
Q 002729          189 LQYYKEAVKLKP----TFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIA---FGNLASTYYERGQADMAILYYKQ  261 (887)
Q Consensus       189 ~~~~~~~l~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~la~~~~~~g~~~~A~~~~~~  261 (887)
                      .+.+.++.+..|    +++..+..++..+...|++++|.+.++++++..|+...   ...........++.+.+++.+++
T Consensus       245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~  324 (409)
T TIGR00540       245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEK  324 (409)
T ss_pred             HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHH
Confidence            667777777666    57888999999999999999999999999998887432   12223333445788899999999


Q ss_pred             HHhcCCCcH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhc
Q 002729          262 AIGCDPRFL--EAYNNLGNALKDVGRVDEAIQCYN--QCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAV  333 (887)
Q Consensus       262 ~l~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  333 (887)
                      +++..|+++  .....+|.++.+.|++++|.++|+  .+++..|++.. +..++.++.+.|+.++|.+++++++..
T Consensus       325 ~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~  399 (409)
T TIGR00540       325 QAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL  399 (409)
T ss_pred             HHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            999999999  888899999999999999999999  57777777655 558999999999999999999998654

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.84  E-value=6.5e-17  Score=170.09  Aligned_cols=428  Identities=18%  Similarity=0.203  Sum_probs=321.7

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002729           33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM  112 (887)
Q Consensus        33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  112 (887)
                      ...++..+.-.+..++|.+.++..+.+++..|+..+++...|..+...|+-++|......++..++.+...|..+|.++.
T Consensus         7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R   86 (700)
T KOG1156|consen    7 ENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR   86 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHh
Confidence            34667777778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHH
Q 002729          113 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYY  192 (887)
Q Consensus       113 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  192 (887)
                      ...+|++|+++|+.++..+|+|...+..++.+..++++++.....-.+.++..|..-..|...+..+...|++..|..++
T Consensus        87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il  166 (700)
T KOG1156|consen   87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEIL  166 (700)
T ss_pred             hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHhhC---CCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHhhHHHHHHHcCChHHHHHHHHHHH
Q 002729          193 KEAVKLK---PTFP-----DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAI  263 (887)
Q Consensus       193 ~~~l~~~---~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l  263 (887)
                      +...+..   |+..     ........+..+.|..++|++.+...-...-+ .......+..+.+.+++++|...+...+
T Consensus       167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll  246 (700)
T KOG1156|consen  167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLL  246 (700)
T ss_pred             HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHH
Confidence            8887755   2221     24445566777888888888877665443333 4445567889999999999999999999


Q ss_pred             hcCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHH-HHHHHHHhccCCCchhH
Q 002729          264 GCDPRFLEAYNNLGNALKDVGRVDEAI-QCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAA-SYYKATLAVTTGLSAPF  341 (887)
Q Consensus       264 ~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~  341 (887)
                      ..+|++...+..+-.++.+-.+--+++ ..|...-+..|.. .....++.....-.++.... .++...++.  ..+...
T Consensus       247 ~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~-e~p~Rlplsvl~~eel~~~vdkyL~~~l~K--g~p~vf  323 (700)
T KOG1156|consen  247 ERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH-ECPRRLPLSVLNGEELKEIVDKYLRPLLSK--GVPSVF  323 (700)
T ss_pred             hhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc-ccchhccHHHhCcchhHHHHHHHHHHHhhc--CCCchh
Confidence            999999988888877776444444555 5555544444332 22223332222223333322 223333332  122333


Q ss_pred             hhHHHHHHHcCCH---HHHHHHHHHHHhc------------CCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002729          342 NNLAVIYKQQGNY---ADAISCYNEVLRI------------DPLAA--DGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT  404 (887)
Q Consensus       342 ~~la~~~~~~g~~---~~A~~~~~~al~~------------~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  404 (887)
                      ..+-..|..-.+.   ++=+..|...+.-            .|...  ..++.++.-+...|+++.|..+...|+...|+
T Consensus       324 ~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPT  403 (700)
T KOG1156|consen  324 KDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPT  403 (700)
T ss_pred             hhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCch
Confidence            3333333222111   1111111221211            12222  35667788899999999999999999999999


Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHhhhcCChhhHhHHH
Q 002729          405 MAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMF  463 (887)
Q Consensus       405 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~  463 (887)
                      -++.+..-|+++...|++++|..+++.+.+++-.|...-..-+.-.......++|.++.
T Consensus       404 liEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~  462 (700)
T KOG1156|consen  404 LIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVL  462 (700)
T ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHH
Confidence            99999999999999999999999999999998776554444555455555555555443

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=1.2e-16  Score=166.42  Aligned_cols=442  Identities=15%  Similarity=0.074  Sum_probs=310.3

Q ss_pred             hHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002729            3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD   82 (887)
Q Consensus         3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~   82 (887)
                      +.-...+..+|+|++|.+...+++...|++..++...-.++.+.++|++|+...++-......+ ...+..+.|.++++.
T Consensus        16 ~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrlnk   94 (652)
T KOG2376|consen   16 LTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLNK   94 (652)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHccc
Confidence            3445677889999999999999999999999999999999999999999996655433222222 223789999999999


Q ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002729           83 IDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEAL  162 (887)
Q Consensus        83 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  162 (887)
                      .++|+..++   ..++.+..+....+++++++|+|++|..+|+...+.+.++.+............  -..+.  ..+..
T Consensus        95 ~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a--~l~~~--~~q~v  167 (652)
T KOG2376|consen   95 LDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA--ALQVQ--LLQSV  167 (652)
T ss_pred             HHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH--hhhHH--HHHhc
Confidence            999999998   445666678889999999999999999999999988877665443332221111  01111  22333


Q ss_pred             hhCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCC-------HHHHHHHHHHHHHcCChHHHHHHH
Q 002729          163 RIQPT-FAIAWSNLAGLFMESGDLNRALQYYKEAVKLK--------PTF-------PDAYLNLGNVYKALGMPQEAIMCY  226 (887)
Q Consensus       163 ~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--------~~~-------~~~~~~l~~~~~~~g~~~~A~~~~  226 (887)
                      ...|. +.+.+++.+.++...|+|.+|++.+++++++.        .+.       ..+...++.++..+|+.++|.+.|
T Consensus       168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy  247 (652)
T KOG2376|consen  168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY  247 (652)
T ss_pred             cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence            33343 67788999999999999999999999995431        111       126678899999999999999999


Q ss_pred             HHHHhhCCC-----hhHHhhHHHHHHHcCChH-HHHHHHHHHHhcCC----------CcHHHHHHHHHHHHHcCCHHHHH
Q 002729          227 QRAVQTRPN-----AIAFGNLASTYYERGQAD-MAILYYKQAIGCDP----------RFLEAYNNLGNALKDVGRVDEAI  290 (887)
Q Consensus       227 ~~~~~~~p~-----~~~~~~la~~~~~~g~~~-~A~~~~~~~l~~~p----------~~~~~~~~la~~~~~~g~~~~A~  290 (887)
                      ...+..++.     ..+-+++..+-....-++ .++..++......+          .-...+.+.+.+.+..+.-+++.
T Consensus       248 ~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r  327 (652)
T KOG2376|consen  248 VDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVR  327 (652)
T ss_pred             HHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            999998765     223333332222111111 11112211111111          11224566666666667777776


Q ss_pred             HHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCC-chhHhhHHHHHHHcCCHHHHHHHHHHHH----
Q 002729          291 QCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGL-SAPFNNLAVIYKQQGNYADAISCYNEVL----  365 (887)
Q Consensus       291 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al----  365 (887)
                      +.....-...|....-.........+...+.+|.+++....+.+|.+ ..+...++.+...+|+++.|++.+...+    
T Consensus       328 ~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~  407 (652)
T KOG2376|consen  328 ELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWK  407 (652)
T ss_pred             HHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhh
Confidence            66655544455443333333334444447889999999999999887 6678889999999999999999999433    


Q ss_pred             ----hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 002729          366 ----RIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI-------RPTMAEAHANLASAYKDSGHVEAAIKSYKQALL  434 (887)
Q Consensus       366 ----~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  434 (887)
                          +.. ..+.+-..+-..+.+.++.+.|...+.+++.-       .+.....+..++..-.+.|+.++|...+++.++
T Consensus       408 ss~~~~~-~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k  486 (652)
T KOG2376|consen  408 SSILEAK-HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVK  486 (652)
T ss_pred             hhhhhhc-cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH
Confidence                222 23444445555667777766666666666543       333344566778888888999999999999999


Q ss_pred             cCCCChHHHHHHHHHhhhc
Q 002729          435 LRPDFPEATCNLLHTLQCV  453 (887)
Q Consensus       435 ~~p~~~~~~~~l~~~~~~~  453 (887)
                      .+|++.++...++.+|...
T Consensus       487 ~n~~d~~~l~~lV~a~~~~  505 (652)
T KOG2376|consen  487 FNPNDTDLLVQLVTAYARL  505 (652)
T ss_pred             hCCchHHHHHHHHHHHHhc
Confidence            9999999999999988764

>PRK12370 invasion protein regulator; Provisional

Probab=99.83  E-value=1.9e-18  Score=196.79  Aligned_cols=270  Identities=16%  Similarity=0.072  Sum_probs=219.2

Q ss_pred             hCCCchh--HHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHH
Q 002729           28 RNPLRTD--NLLLLGAIYYQ---LHDYDMCIARNEEALRLEPRFAECYGNMANAWKEK---------GDIDLAIRYYLVA   93 (887)
Q Consensus        28 ~~p~~~~--~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~a   93 (887)
                      ..+.+.+  .++..|..+..   .+++++|+..|+++++.+|+++.++..+|.++...         +++++|+..++++
T Consensus       251 ~~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A  330 (553)
T PRK12370        251 SELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA  330 (553)
T ss_pred             CCCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence            4444544  34455554433   35689999999999999999999999999887643         3488999999999


Q ss_pred             HhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHH
Q 002729           94 IELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWS  173 (887)
Q Consensus        94 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  173 (887)
                      ++.+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++.+|.++..+.
T Consensus       331 l~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~  410 (553)
T PRK12370        331 TELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGI  410 (553)
T ss_pred             HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999887777


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHhhHHHHHHHcCC
Q 002729          174 NLAGLFMESGDLNRALQYYKEAVKLK-PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQ  251 (887)
Q Consensus       174 ~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~la~~~~~~g~  251 (887)
                      .++.+++..|++++|+..++++++.. |+++..+..++.++...|++++|...+.++....|. ......++..|...|+
T Consensus       411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  490 (553)
T PRK12370        411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE  490 (553)
T ss_pred             HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH
Confidence            77777888999999999999998775 778888999999999999999999999998887777 6667777888887774


Q ss_pred             hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002729          252 ADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ  300 (887)
Q Consensus       252 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  300 (887)
                        +|...++++++..............++.-.|+-+.+... +++.+.+
T Consensus       491 --~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~  536 (553)
T PRK12370        491 --RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED  536 (553)
T ss_pred             --HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence              777777776643222221223367777777887777776 7766543

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.83  E-value=4.2e-19  Score=170.71  Aligned_cols=270  Identities=21%  Similarity=0.235  Sum_probs=220.0

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcC---CC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 002729           41 AIYYQLHDYDMCIARNEEALRLE---PR-------FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASA  110 (887)
Q Consensus        41 ~~~~~~g~~~~A~~~~~~al~~~---p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  110 (887)
                      .+++..++...|-......++.+   |.       +..-...+|+||.++|.+.+|.+.++.+++..|. ++.+..++.+
T Consensus       187 y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskv  265 (478)
T KOG1129|consen  187 YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKV  265 (478)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHH
Confidence            34566777777776666655442   11       2334467899999999999999999999987765 8889999999


Q ss_pred             HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHH
Q 002729          111 YMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQ  190 (887)
Q Consensus       111 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  190 (887)
                      |.+..+...|+..+.+.++..|.++..+...+.++..++++++|.++|+.+++.+|.+.++...++..|+-.++.+-|+.
T Consensus       266 Y~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~Alr  345 (478)
T KOG1129|consen  266 YQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALR  345 (478)
T ss_pred             HHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999998889999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--CC--hhHHhhHHHHHHHcCChHHHHHHHHHHHhcC
Q 002729          191 YYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR--PN--AIAFGNLASTYYERGQADMAILYYKQAIGCD  266 (887)
Q Consensus       191 ~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~  266 (887)
                      +|++++++.-.+++.+.++|.+....++++-++..|++++...  |+  ...|++++.+....|++..|...|+-++..+
T Consensus       346 yYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d  425 (478)
T KOG1129|consen  346 YYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD  425 (478)
T ss_pred             HHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC
Confidence            9999999999999999999999999999999999999988753  33  6677777777777777777777777777777


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHH
Q 002729          267 PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLG  311 (887)
Q Consensus       267 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  311 (887)
                      +++.+++++++.+-.+.|+.++|..+++.+....|+-.+..++++
T Consensus       426 ~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~  470 (478)
T KOG1129|consen  426 AQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQ  470 (478)
T ss_pred             cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccccccee
Confidence            777777777777777777777777777777777666555554443

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.83  E-value=3.3e-17  Score=178.72  Aligned_cols=298  Identities=12%  Similarity=0.034  Sum_probs=228.6

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH-HHHHHHHHH
Q 002729           34 DNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADA-WSNLASAYM  112 (887)
Q Consensus        34 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~  112 (887)
                      ...+..|......|++++|.+.+.+..+..+.....+...+....+.|+++.|..++.++.+.+|++... ....+..+.
T Consensus        85 ~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l  164 (398)
T PRK10747         85 RKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQL  164 (398)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence            3345667777778888888877777655433323333334555588888888888888888888876433 334478888


Q ss_pred             HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHH--------HHHHHHHHHHHcCC
Q 002729          113 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAI--------AWSNLAGLFMESGD  184 (887)
Q Consensus       113 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--------~~~~la~~~~~~g~  184 (887)
                      ..|++++|...++++.+.+|+++.++..++.+|...|++++|.+.+.++.+..+.+..        ++..+........+
T Consensus       165 ~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~  244 (398)
T PRK10747        165 ARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQG  244 (398)
T ss_pred             HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            8888888888888888888888888888888888888888888888888776544322        22233333334445


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHhhHHHHHHHcCChHHHHHHHHHHHh
Q 002729          185 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIG  264 (887)
Q Consensus       185 ~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~~l~  264 (887)
                      .+...+.++...+..|+++.+...++..+...|+.++|.+.+++.++..++.......+.  ...++.+++++.+++.++
T Consensus       245 ~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~--l~~~~~~~al~~~e~~lk  322 (398)
T PRK10747        245 SEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPR--LKTNNPEQLEKVLRQQIK  322 (398)
T ss_pred             HHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCChHHHHHHHHHHHh
Confidence            556666666666667788999999999999999999999999999987666543333333  345899999999999999


Q ss_pred             cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcc
Q 002729          265 CDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT  334 (887)
Q Consensus       265 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  334 (887)
                      ..|+++..+..+|.++...+++++|.+.|+++++..|++.. +..++.++.+.|+.++|..+|++.+...
T Consensus       323 ~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        323 QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999888644 5679999999999999999999998754

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.82  E-value=3.8e-17  Score=178.20  Aligned_cols=294  Identities=13%  Similarity=0.035  Sum_probs=237.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH-HHHHHHcCChHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHH
Q 002729           70 YGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNL-ASAYMRKGRLNEAAQCCRQALALNPLLVDA-HSNLGNLMKA  147 (887)
Q Consensus        70 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~~la~~~~~  147 (887)
                      .+..|......|++++|.+...+..+..+. +..++.+ +....+.|+++.|..+++++.+.+|++... ....+.++..
T Consensus        87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~  165 (398)
T PRK10747         87 QTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLA  165 (398)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence            456677777799999999888887665443 4444444 666699999999999999999998887543 3455899999


Q ss_pred             cCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH--------HHHHHHHHHHHcCCh
Q 002729          148 QGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD--------AYLNLGNVYKALGMP  219 (887)
Q Consensus       148 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~--------~~~~l~~~~~~~g~~  219 (887)
                      .|++++|...++++.+.+|+++.++..++.+|...|++++|++.+.++.+....++.        ++..+........+.
T Consensus       166 ~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~  245 (398)
T PRK10747        166 RNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGS  245 (398)
T ss_pred             CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence            999999999999999999999999999999999999999999999999887766544        222223333333444


Q ss_pred             HHHHHHHHHHHhhCCC-hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002729          220 QEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLS  298 (887)
Q Consensus       220 ~~A~~~~~~~~~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  298 (887)
                      +...+.++......|+ ......++..+...|+.++|.+.+++.++..+ +.......+.  ...++.+++++..++.++
T Consensus       246 ~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-~~~l~~l~~~--l~~~~~~~al~~~e~~lk  322 (398)
T PRK10747        246 EGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY-DERLVLLIPR--LKTNNPEQLEKVLRQQIK  322 (398)
T ss_pred             HHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHHHHHHHhh--ccCCChHHHHHHHHHHHh
Confidence            4555555555444444 78889999999999999999999999998544 4444333333  345899999999999999


Q ss_pred             cCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002729          299 LQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRID  368 (887)
Q Consensus       299 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  368 (887)
                      ..|+++..+..+|.++...+++++|.+.|+++++..|++.. +..++.++.++|+.++|..+|++++.+.
T Consensus       323 ~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        323 QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999988644 6689999999999999999999998753

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.82  E-value=1.8e-16  Score=154.24  Aligned_cols=443  Identities=14%  Similarity=0.040  Sum_probs=306.9

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Q 002729            7 HQMYKSGSYKQALEHSNSVYERNPLR-TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDL   85 (887)
Q Consensus         7 ~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~   85 (887)
                      ..+..+.+|..|+.+++-....+... ...-.++|.|++.+|+|++|+..|+-+...+..+.+.+..++-+++-.|.|.+
T Consensus        30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e  109 (557)
T KOG3785|consen   30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE  109 (557)
T ss_pred             HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence            35677889999999998776554332 35667899999999999999999999988777788999999999999999999


Q ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 002729           86 AIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ  165 (887)
Q Consensus        86 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  165 (887)
                      |...-.++    |+++-....+-.+..+.++-++-... ...++   +..+-...++.+.+..-.|++|++.|.+.+..+
T Consensus       110 A~~~~~ka----~k~pL~~RLlfhlahklndEk~~~~f-h~~Lq---D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn  181 (557)
T KOG3785|consen  110 AKSIAEKA----PKTPLCIRLLFHLAHKLNDEKRILTF-HSSLQ---DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN  181 (557)
T ss_pred             HHHHHhhC----CCChHHHHHHHHHHHHhCcHHHHHHH-HHHHh---hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            98876664    55565555666666677775554433 33332   223456677888888888999999999999999


Q ss_pred             CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHhhHHHH
Q 002729          166 PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLAST  245 (887)
Q Consensus       166 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~la~~  245 (887)
                      |+.......++.+|++..-++-+.+.+.-.+...|+++-+.+..+....+.=+-..|......+.......   +..+.-
T Consensus       182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~---~~f~~~  258 (557)
T KOG3785|consen  182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE---YPFIEY  258 (557)
T ss_pred             hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc---chhHHH
Confidence            99888888899999999999999999999999999998888888777776644444444444433321110   111111


Q ss_pred             HHH-----cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCCh
Q 002729          246 YYE-----RGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNML  320 (887)
Q Consensus       246 ~~~-----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~  320 (887)
                      +++     -.+-+.|++.+-..++.-|   ++..+++..|.++++.++|..+.+.   ++|..|.-+...|.+....|+-
T Consensus       259 l~rHNLVvFrngEgALqVLP~L~~~IP---EARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe  332 (557)
T KOG3785|consen  259 LCRHNLVVFRNGEGALQVLPSLMKHIP---EARLNLIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQE  332 (557)
T ss_pred             HHHcCeEEEeCCccHHHhchHHHhhCh---HhhhhheeeecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhh
Confidence            111     1234556666655555444   4677888888888888888776654   5788887777777777777765


Q ss_pred             hHHHHHHHHHHhc-------c--CCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 002729          321 PAAASYYKATLAV-------T--TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDA  391 (887)
Q Consensus       321 ~~A~~~~~~~~~~-------~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  391 (887)
                      ....+.++.+.+.       .  -+...-...++..++-..++++.+.+++..-...-++....++++.++...|++.+|
T Consensus       333 ~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~ea  412 (557)
T KOG3785|consen  333 TGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEA  412 (557)
T ss_pred             cCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHH
Confidence            5444444333221       1  122233556777777788888888888887777777778888888888888888888


Q ss_pred             HHHHHHHHhcC-CCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHH-HHHHHHHhhhcCChhhHhHHHHHHHH
Q 002729          392 IQDYIRAITIR-PTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA-TCNLLHTLQCVCSWEDRDRMFSEVEG  468 (887)
Q Consensus       392 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~  468 (887)
                      .+.|-+.-..+ .+.......|+.||.+.|+.+-|...|-+.  -.|...-. +..++..+..++.+--+.+.|++++.
T Consensus       413 Eelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~--~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~  489 (557)
T KOG3785|consen  413 EELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT--NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEI  489 (557)
T ss_pred             HHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc--CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc
Confidence            88887766554 233445567888888888888888777543  12222222 22334445555555555666666554

>PRK12370 invasion protein regulator; Provisional

Probab=99.82  E-value=7.8e-18  Score=191.77  Aligned_cols=251  Identities=16%  Similarity=0.069  Sum_probs=219.1

Q ss_pred             CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 002729           81 GDIDLAIRYYLVAIELRPNFADAWSNLASAYMRK---------GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLV  151 (887)
Q Consensus        81 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~  151 (887)
                      +++++|+..|+++++.+|+++.++..++.++...         +++++|...++++++++|+++.++..+|.++...|++
T Consensus       275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~  354 (553)
T PRK12370        275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY  354 (553)
T ss_pred             HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence            4679999999999999999999999999887643         3489999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002729          152 QEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ  231 (887)
Q Consensus       152 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  231 (887)
                      ++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++.+|.++..+..++.++...|++++|+..+++++.
T Consensus       355 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~  434 (553)
T PRK12370        355 IVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRS  434 (553)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999988777777778889999999999999988


Q ss_pred             hC-CC-hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHh
Q 002729          232 TR-PN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTN  309 (887)
Q Consensus       232 ~~-p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  309 (887)
                      .. |+ ...+..++.++...|++++|...++++....|........++..+...|+  +|...++++++.....+.-...
T Consensus       435 ~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~  512 (553)
T PRK12370        435 QHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRIDNNPGL  512 (553)
T ss_pred             hccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHhhcCchH
Confidence            75 54 67788999999999999999999999988889888888899998888884  7888777776654333333333


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHhcc
Q 002729          310 LGNIYMEWNMLPAAASYYKATLAVT  334 (887)
Q Consensus       310 l~~~~~~~g~~~~A~~~~~~~~~~~  334 (887)
                      ...+|.-.|+.+.+..+ +++.+..
T Consensus       513 ~~~~~~~~g~~~~~~~~-~~~~~~~  536 (553)
T PRK12370        513 LPLVLVAHGEAIAEKMW-NKFKNED  536 (553)
T ss_pred             HHHHHHHHhhhHHHHHH-HHhhccc
Confidence            77778888888888877 7766554

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.79  E-value=3.8e-16  Score=150.84  Aligned_cols=260  Identities=18%  Similarity=0.194  Sum_probs=121.9

Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHHHcCC
Q 002729            8 QMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR-----FAECYGNMANAWKEKGD   82 (887)
Q Consensus         8 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~   82 (887)
                      .++-..+.++|+++|-.+++.+|...++.+.+|..+.+.|+.+.|+.+.+..++. |+     ...+...+|.-|...|-
T Consensus        44 NfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl  122 (389)
T COG2956          44 NFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGL  122 (389)
T ss_pred             HHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhh
Confidence            3444444455555555555555555555555555555555555555544443332 22     12344445555555555


Q ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCChHHHHHH
Q 002729           83 IDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLV-----DAHSNLGNLMKAQGLVQEAYSC  157 (887)
Q Consensus        83 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~  157 (887)
                      ++.|...|....+...--..+...+..+|....++++|++..++..+..+...     ..+..++..+....+.+.|...
T Consensus       123 ~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~  202 (389)
T COG2956         123 LDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL  202 (389)
T ss_pred             hhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence            55555555444443323333444455555555555555555554444443321     2334444444444444445555


Q ss_pred             HHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh
Q 002729          158 YLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF-PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNA  236 (887)
Q Consensus       158 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~  236 (887)
                      +.++++.+|++..+-..+|.++...|++++|++.++.+++.+|+. +++...+..+|...|+.++.+..+.++.+..+..
T Consensus       203 l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~  282 (389)
T COG2956         203 LKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA  282 (389)
T ss_pred             HHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence            555555455444444444555555555555555555444444443 2244444444444455555444444444444444


Q ss_pred             hHHhhHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 002729          237 IAFGNLASTYYERGQADMAILYYKQAIGCDPR  268 (887)
Q Consensus       237 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~  268 (887)
                      .....++..-....-.+.|..++.+-+...|.
T Consensus       283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt  314 (389)
T COG2956         283 DAELMLADLIELQEGIDAAQAYLTRQLRRKPT  314 (389)
T ss_pred             cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCc
Confidence            44444444444444444444444444444444

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.79  E-value=7.1e-18  Score=175.69  Aligned_cols=230  Identities=20%  Similarity=0.308  Sum_probs=151.7

Q ss_pred             hHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002729            3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD   82 (887)
Q Consensus         3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~   82 (887)
                      |..|..++++|+..+|.-.|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++.+++..||.+|...|.
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~  368 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL  368 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence            34566777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHhcCCCcHHHHHH-------HHHHHHHcCChHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHH
Q 002729           83 IDLAIRYYLVAIELRPNFADAWSN-------LASAYMRKGRLNEAAQCCRQALALNP--LLVDAHSNLGNLMKAQGLVQE  153 (887)
Q Consensus        83 ~~~A~~~~~~al~~~p~~~~~~~~-------la~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~  153 (887)
                      -.+|+.++.+-+...|.....-..       ..........+..-.+.|-.+....|  .+++++..||.+|.-.|+|++
T Consensus       369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr  448 (579)
T KOG1125|consen  369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR  448 (579)
T ss_pred             HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence            777777777776665542111000       00000111122334445555555555  566677777777777777777


Q ss_pred             HHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002729          154 AYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT  232 (887)
Q Consensus       154 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  232 (887)
                      |+.+|+.++...|++...|+.||..+....+.++|+..|.+++++.|....+++++|..+..+|.|++|.+.|-.++.+
T Consensus       449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m  527 (579)
T KOG1125|consen  449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM  527 (579)
T ss_pred             HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence            7777777777777777777777777777777777777777777777777777777777777777777777777666654

>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.79  E-value=5.1e-17  Score=174.90  Aligned_cols=297  Identities=12%  Similarity=0.063  Sum_probs=181.2

Q ss_pred             HhhhHHhhcCCCCCcEEEEEecCCCCC--hH--HHHHHHhhcCceEECCCCCHHHHHHHHHhCCCeEEEecCCcCCCCch
Q 002729          553 HLMGSVFGMHNKENVEVFCYALSPNDG--TE--WRQRTQSEAEHFVDVSAMSSDMIAKLINEDKIQILINLNGYTKGARN  628 (887)
Q Consensus       553 ~~~~~~~~~~~~~~~e~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dil~~~~~~~~~~~~  628 (887)
                      .||.+.+..   ++++|+.|+.-+.+.  +.  ..-.++....+-.....-+-..++..|++.+|||+     ||+..+.
T Consensus       220 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ir~~rpDIV-----Ht~~~~a  291 (578)
T PRK15490        220 DFFLKEVLE---EQVEVLEIAKITGNLFDDATIESPELRLLLSHLPPVCKYGIKHLVPHLCERKLDYL-----SVWQDGA  291 (578)
T ss_pred             chhHHHHHh---cCCceEEeeccchhhhhhccccchHHHHHHhcCChHHHHHHHHHHHHHHHcCCCEE-----EEcCccc
Confidence            344444433   678888887443211  11  00012333332222323346789999999999999     7765554


Q ss_pred             hhh---hcC--CCceEEecc-ccCCCCCCCcc----------c--EEEecCccCCCCc--C------CCCccceeecCCc
Q 002729          629 EIF---AMQ--PAPIQVSYM-GFPGTTGASYI----------D--YLVTDEFVSPLRY--A------HIYSEKLVHVPHC  682 (887)
Q Consensus       629 ~~~---~~r--~apvq~~~~-g~~~t~g~~~~----------d--~~~~d~~~~p~~~--~------~~~~e~~~~lp~~  682 (887)
                      .++   +.+  ..||.++.. |++...+-..+          +  +..+| ++.....  +      ....+++..+||+
T Consensus       292 ~l~g~laA~lagvpviv~~~h~~~~~~~~r~~~~e~~~~~~a~~i~~~sd-~v~~s~~v~~~l~~~lgip~~KI~VIyNG  370 (578)
T PRK15490        292 CLMIALAALIAGVPRIQLGLRGLPPVVRKRLFKPEYEPLYQALAVVPGVD-FMSNNHCVTRHYADWLKLEAKHFQVVYNG  370 (578)
T ss_pred             HHHHHHHHHhcCCCEEEEeecccCCcchhhHHHHHHHHhhhhceeEecch-hhhccHHHHHHHHHHhCCCHHHEEEEeCC
Confidence            333   223  357766653 23322221100          1  11222 2222221  1      1235678888886


Q ss_pred             cccCCCccccccCCCCCCCCCCC--CCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHH
Q 002729          683 YFVNDYKQKNMDVLDPNCQPKRS--DYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRL  758 (887)
Q Consensus       683 ~~~~~~~~~~~~~~~~~~~~~r~--~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l  758 (887)
                      .....+...    .+. +...|.  ..+++++.+++|+++++  .|....+++++.++++..|+.+|+|+|.++. ++.+
T Consensus       371 VD~~rf~p~----~~~-~~~~r~~~~~~l~~~~~vIg~VgRl~~~Kg~~~LI~A~a~llk~~pdirLvIVGdG~~-~eeL  444 (578)
T PRK15490        371 VLPPSTEPS----SEV-PHKIWQQFTQKTQDADTTIGGVFRFVGDKNPFAWIDFAARYLQHHPATRFVLVGDGDL-RAEA  444 (578)
T ss_pred             cchhhcCcc----chh-hHHHHHHhhhccCCCCcEEEEEEEEehhcCHHHHHHHHHHHHhHCCCeEEEEEeCchh-HHHH
Confidence            643222110    000 001122  34566677788888875  5999999999999999999999999998876 7789


Q ss_pred             HHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCC
Q 002729          759 RAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGL  837 (887)
Q Consensus       759 ~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~  837 (887)
                      ++.+.+.|+ .++|.|.|..  .+...+|+.+|||+-|+-++| |++++|||+||+|||+.......+-+.      -|.
T Consensus       445 k~la~elgL-~d~V~FlG~~--~Dv~~~LaaADVfVlPS~~EGfp~vlLEAMA~GlPVVATdvGG~~EiV~------dG~  515 (578)
T PRK15490        445 QKRAEQLGI-LERILFVGAS--RDVGYWLQKMNVFILFSRYEGLPNVLIEAQMVGVPVISTPAGGSAECFI------EGV  515 (578)
T ss_pred             HHHHHHcCC-CCcEEECCCh--hhHHHHHHhCCEEEEcccccCccHHHHHHHHhCCCEEEeCCCCcHHHcc------cCC
Confidence            999999999 5999999984  466778899999999988888 999999999999999765544444222      266


Q ss_pred             CCccccC--CHHHH---HHHHHHHhcCHHHHHHHHHHHHhhc
Q 002729          838 GEEMIVN--SMKEY---EERAVSLALDRQKLQALTNKLKSVR  874 (887)
Q Consensus       838 ~~~~~~~--~~~~y---~~~a~~l~~d~~~~~~~~~~~~~~~  874 (887)
                      ++ +++.  |.++.   +..+.++..+.+.+..+.++.|+..
T Consensus       516 nG-~LVp~~D~~aLa~ai~lA~aL~~ll~~~~~mg~~ARe~V  556 (578)
T PRK15490        516 SG-FILDDAQTVNLDQACRYAEKLVNLWRSRTGICQQTQSFL  556 (578)
T ss_pred             cE-EEECCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66 6653  23333   3334555555555545555555543

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.79  E-value=9.9e-16  Score=149.17  Aligned_cols=422  Identities=15%  Similarity=0.084  Sum_probs=319.0

Q ss_pred             hHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002729            3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD   82 (887)
Q Consensus         3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~   82 (887)
                      +.+|.+++..|+|++|+..|+-+...+.-+.+.+..++-|++-+|.|.+|.....++    |+++-....+-....+.|+
T Consensus        61 lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka----~k~pL~~RLlfhlahklnd  136 (557)
T KOG3785|consen   61 LWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA----PKTPLCIRLLFHLAHKLND  136 (557)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC----CCChHHHHHHHHHHHHhCc
Confidence            568999999999999999999998877667899999999999999999998877654    6666666666666667777


Q ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002729           83 IDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEAL  162 (887)
Q Consensus        83 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  162 (887)
                      -++- -.|.+.+.-   ..+-...++.+.+..-.|.+|++.|++++..+|+.......++.+|.+..-++-+.+.+.-.+
T Consensus       137 Ek~~-~~fh~~LqD---~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL  212 (557)
T KOG3785|consen  137 EKRI-LTFHSSLQD---TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYL  212 (557)
T ss_pred             HHHH-HHHHHHHhh---hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHH
Confidence            5543 344444432   234556788888888899999999999999999988888999999999999999999999999


Q ss_pred             hhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHhh
Q 002729          163 RIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKP-TFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGN  241 (887)
Q Consensus       163 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  241 (887)
                      +..|+++.+.+.++...++.=+-..|..-......... ..+..-..+-.-+.--.+-+.|++.+-.+++.-|  ++..+
T Consensus       213 ~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IP--EARlN  290 (557)
T KOG3785|consen  213 RQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIP--EARLN  290 (557)
T ss_pred             HhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhCh--Hhhhh
Confidence            99999999999999888877555555555555443221 2222211111111112344667777666665544  56778


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cC------CCChHHHHhHHH
Q 002729          242 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLS---LQ------PSHPQALTNLGN  312 (887)
Q Consensus       242 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~------p~~~~~~~~l~~  312 (887)
                      ++..|.++++.++|..+.+.   .+|..+.-|...|.+....|+--...+.++-+-+   +-      -+.......++.
T Consensus       291 L~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs  367 (557)
T KOG3785|consen  291 LIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMAS  367 (557)
T ss_pred             heeeecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHH
Confidence            88899999999999887764   6888888888999999888876555544444332   21      122234456777


Q ss_pred             HHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHH
Q 002729          313 IYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRID-PLAADGLVNRGNTYKEIGRVTDA  391 (887)
Q Consensus       313 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A  391 (887)
                      ++.-..++++.+.+++......-++....++++.++...|++.+|.++|-+..... .+.......++.||...|+.+-|
T Consensus       368 ~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lA  447 (557)
T KOG3785|consen  368 YFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLA  447 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHH
Confidence            78888899999999999888888888999999999999999999999998775544 23344566789999999999998


Q ss_pred             HHHHHHHHhcCCCc-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 002729          392 IQDYIRAITIRPTM-AEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF  439 (887)
Q Consensus       392 ~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  439 (887)
                      -+.+-+.-  .|.. -..+..++..+.+.+++--|.+.|...-.++|++
T Consensus       448 W~~~lk~~--t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p  494 (557)
T KOG3785|consen  448 WDMMLKTN--TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP  494 (557)
T ss_pred             HHHHHhcC--CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence            77665421  2322 3345667889999999999999999988888875

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.79  E-value=5.4e-17  Score=150.09  Aligned_cols=205  Identities=26%  Similarity=0.240  Sum_probs=171.1

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002729           33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM  112 (887)
Q Consensus        33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  112 (887)
                      ..+...+|..|++.|++..|...++++++.+|++..+|..++.+|.+.|+.+.|.+.|+++++++|++.+++++.|..++
T Consensus        35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC  114 (250)
T COG3063          35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence            45677788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHH
Q 002729          113 RKGRLNEAAQCCRQALAL--NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQ  190 (887)
Q Consensus       113 ~~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  190 (887)
                      .+|++++|...|++++..  .+....++.++|.|..+.|+.+.|...|+++++.+|+.+.....++...++.|++..|..
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~  194 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL  194 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence            888888888888888764  245667888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChh
Q 002729          191 YYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAI  237 (887)
Q Consensus       191 ~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~  237 (887)
                      ++++.....+-..+.+...+.+-...|+-+.+-++=.++....|...
T Consensus       195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~  241 (250)
T COG3063         195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE  241 (250)
T ss_pred             HHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence            88888877777777777777888888888888887777777777743

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.78  E-value=6.4e-17  Score=168.74  Aligned_cols=229  Identities=18%  Similarity=0.130  Sum_probs=164.3

Q ss_pred             CChHHHHHHHHHHHhhC---CC--hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 002729          217 GMPQEAIMCYQRAVQTR---PN--AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQ  291 (887)
Q Consensus       217 g~~~~A~~~~~~~~~~~---p~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~  291 (887)
                      +..+.++..+.+++...   |.  ...++.+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+.
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~  119 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE  119 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            45566777777777532   22  56677788888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 002729          292 CYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA  371 (887)
Q Consensus       292 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  371 (887)
                      .|+++++++|++..++.++|.++...|++++|++.|+++++.+|+++... ....+....+++++|+..+++.....+..
T Consensus       120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~-~~~~l~~~~~~~~~A~~~l~~~~~~~~~~  198 (296)
T PRK11189        120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRA-LWLYLAESKLDPKQAKENLKQRYEKLDKE  198 (296)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHccCCHHHHHHHHHHHHhhCCcc
Confidence            88888888888888888888888888888888888888888888776321 11223345678888888887766543222


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH-------hcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CChHHH
Q 002729          372 ADGLVNRGNTYKEIGRVTDAIQDYIRAI-------TIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRP-DFPEAT  443 (887)
Q Consensus       372 ~~~~~~l~~~~~~~g~~~~A~~~~~~al-------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~  443 (887)
                      .  +. .+.+....|+..++ +.++.+.       ++.|...++|+.+|.++.+.|++++|+.+|+++++.+| ++.+..
T Consensus       199 ~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~  274 (296)
T PRK11189        199 Q--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHR  274 (296)
T ss_pred             c--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHH
Confidence            1  22 34555556665443 2333333       45566778999999999999999999999999999986 666665


Q ss_pred             HHHHHHh
Q 002729          444 CNLLHTL  450 (887)
Q Consensus       444 ~~l~~~~  450 (887)
                      +.++...
T Consensus       275 ~~~~e~~  281 (296)
T PRK11189        275 YALLELA  281 (296)
T ss_pred             HHHHHHH
Confidence            5555443

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.78  E-value=1.3e-16  Score=166.45  Aligned_cols=231  Identities=20%  Similarity=0.128  Sum_probs=131.8

Q ss_pred             CCHHHHHHHHHHHHhcCC---C-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHH
Q 002729           47 HDYDMCIARNEEALRLEP---R-FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQ  122 (887)
Q Consensus        47 g~~~~A~~~~~~al~~~p---~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  122 (887)
                      +..+.++..+.+++...|   . .+..++.+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+.
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~  119 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE  119 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            455566666666664322   2 245566666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002729          123 CCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF  202 (887)
Q Consensus       123 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~  202 (887)
                      .|+++++++|++..++..+|.++...|++++|++.|+++++.+|+++... ....+....+++++|+..+.+.....+..
T Consensus       120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~-~~~~l~~~~~~~~~A~~~l~~~~~~~~~~  198 (296)
T PRK11189        120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRA-LWLYLAESKLDPKQAKENLKQRYEKLDKE  198 (296)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHccCCHHHHHHHHHHHHhhCCcc
Confidence            66666666666666666666666666666666666666666666665211 11112334456666666665554332211


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHH-------hhCCC-hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCC-CcHHHH
Q 002729          203 PDAYLNLGNVYKALGMPQEAIMCYQRAV-------QTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDP-RFLEAY  273 (887)
Q Consensus       203 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~  273 (887)
                        .+. .+..+...|+..++ ..++.+.       +..|. ..+|+.+|.++.+.|++++|+.+|++++..+| +..+..
T Consensus       199 --~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~  274 (296)
T PRK11189        199 --QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHR  274 (296)
T ss_pred             --ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHH
Confidence              111 23444445554333 2222222       22222 45677777777777777777777777777665 555554


Q ss_pred             HHHHHHHHH
Q 002729          274 NNLGNALKD  282 (887)
Q Consensus       274 ~~la~~~~~  282 (887)
                      +.+......
T Consensus       275 ~~~~e~~~~  283 (296)
T PRK11189        275 YALLELALL  283 (296)
T ss_pred             HHHHHHHHH
Confidence            444444433

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.78  E-value=1.3e-16  Score=147.68  Aligned_cols=207  Identities=23%  Similarity=0.179  Sum_probs=169.0

Q ss_pred             hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHH
Q 002729          236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM  315 (887)
Q Consensus       236 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  315 (887)
                      ..+...+|..|.+.|++..|...++++++.+|++..+|..++.+|.+.|+.+.|.+.|++++++.|++.+++++.|..++
T Consensus        35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC  114 (250)
T COG3063          35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence            45667778888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HcCChhHHHHHHHHHHhc--cCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002729          316 EWNMLPAAASYYKATLAV--TTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQ  393 (887)
Q Consensus       316 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~  393 (887)
                      .+|++++|...|++++..  .+..+.+|.++|.|..+.|+.+.|.++|+++++.+|+.+.....++....+.|++..|..
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~  194 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL  194 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence            888888888888888765  355677788888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHH
Q 002729          394 DYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA  442 (887)
Q Consensus       394 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  442 (887)
                      .+++.....+-..+.+...+.+-...|+-+.|-++=.+.....|...+.
T Consensus       195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~  243 (250)
T COG3063         195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY  243 (250)
T ss_pred             HHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence            8888887777777777777888888888888888877777777776553

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.77  E-value=2.4e-15  Score=145.36  Aligned_cols=264  Identities=20%  Similarity=0.236  Sum_probs=205.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC------hhHHhhHHHHHHHc
Q 002729          176 AGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN------AIAFGNLASTYYER  249 (887)
Q Consensus       176 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~la~~~~~~  249 (887)
                      |.-+.-.++.++|+..|..+++.+|...++...+|++|...|..+.|+.+-+.+++. |+      ..+...+|.-|...
T Consensus        42 GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~a  120 (389)
T COG2956          42 GLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAA  120 (389)
T ss_pred             HHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHh
Confidence            344455667777777777777777777777777777777777777777776665543 33      45667777778888


Q ss_pred             CChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----hHHHHhHHHHHHHcCChhHHH
Q 002729          250 GQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH-----PQALTNLGNIYMEWNMLPAAA  324 (887)
Q Consensus       250 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~g~~~~A~  324 (887)
                      |-++.|...|....+...--..+...+..+|....++++|++.-++..+..++.     ...+..++..+....+.+.|.
T Consensus       121 Gl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~  200 (389)
T COG2956         121 GLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAR  200 (389)
T ss_pred             hhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence            888888888877766544455677788888888888888888888888776654     235667777788888888888


Q ss_pred             HHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 002729          325 SYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA-ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRP  403 (887)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  403 (887)
                      ..++++++.+|++..+-..+|.++...|++++|++.++.+++.+|+. +.+...+..+|.++|+.++.+..+.++.+..+
T Consensus       201 ~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~  280 (389)
T COG2956         201 ELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT  280 (389)
T ss_pred             HHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence            88888888888888888889999999999999999999999988876 56788888999999999999999999998887


Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChH
Q 002729          404 TMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE  441 (887)
Q Consensus       404 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  441 (887)
                      . +++-..++..-....-.+.|..+..+-+...|+-..
T Consensus       281 g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~g  317 (389)
T COG2956         281 G-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRG  317 (389)
T ss_pred             C-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHH
Confidence            6 455666777777777788888888888888887443

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=1e-16  Score=159.67  Aligned_cols=279  Identities=19%  Similarity=0.218  Sum_probs=183.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 002729            5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDID   84 (887)
Q Consensus         5 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~   84 (887)
                      .+..++++.+|.+|+..+..+++..|++...|...+.++...++|++|.-..++.+++.|.....+...++++...++..
T Consensus        55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i  134 (486)
T KOG0550|consen   55 EGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLI  134 (486)
T ss_pred             hcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHH
Confidence            34455555566666666666666666555555566666666666666666666666665555555555555555555555


Q ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002729           85 LAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALN---PLLVDAHSNLGNLMKAQGLVQEAYSCYLEA  161 (887)
Q Consensus        85 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  161 (887)
                      +|...++..        .++           ....|+..+++.+..+   |.-..+-...+.++...|++++|...--..
T Consensus       135 ~A~~~~~~~--------~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~i  195 (486)
T KOG0550|consen  135 EAEEKLKSK--------QAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDI  195 (486)
T ss_pred             HHHHHhhhh--------hhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHH
Confidence            555444310        000           0111112222222111   222334455666777777777777777777


Q ss_pred             HhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH------------HHHHHHHHHHHcCChHHHHHHHHHH
Q 002729          162 LRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD------------AYLNLGNVYKALGMPQEAIMCYQRA  229 (887)
Q Consensus       162 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~------------~~~~l~~~~~~~g~~~~A~~~~~~~  229 (887)
                      +++++.+..++...+.+++..++.+.|+..|++++.++|+...            .+..-|+-..+.|++.+|.+.|..+
T Consensus       196 lkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Ytea  275 (486)
T KOG0550|consen  196 LKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEA  275 (486)
T ss_pred             HhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHh
Confidence            7777777777777777777777777777777777777766432            4556677778888888888888888


Q ss_pred             HhhCCC-----hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002729          230 VQTRPN-----AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS  302 (887)
Q Consensus       230 ~~~~p~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  302 (887)
                      +.++|+     ...|.+.+.+..+.|+..+|+...+.++++++....++...|.++..+++|++|.+.++++.+...+
T Consensus       276 l~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  276 LNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             hcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            888776     5667788888888888888888888888888888888888888888888888888888888877554

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.76  E-value=2.4e-16  Score=160.56  Aligned_cols=201  Identities=21%  Similarity=0.237  Sum_probs=145.8

Q ss_pred             hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHH
Q 002729          236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM  315 (887)
Q Consensus       236 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  315 (887)
                      ...+..++..+...|++++|+..++++++.+|++..++..++.++...|++++|++.++++++..|.+...+..++.++.
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  110 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC  110 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence            45566667777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HcCChhHHHHHHHHHHhcc--CCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002729          316 EWNMLPAAASYYKATLAVT--TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQ  393 (887)
Q Consensus       316 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~  393 (887)
                      ..|++++|...+++++...  +.....+..+|.++...|++++|...++++++.+|.+...+..+|.++...|++++|..
T Consensus       111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  190 (234)
T TIGR02521       111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA  190 (234)
T ss_pred             HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH
Confidence            7777777777777776543  33455666777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 002729          394 DYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLR  436 (887)
Q Consensus       394 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  436 (887)
                      .++++++..|.++..+..++.++...|+.++|..+.+.+....
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  233 (234)
T TIGR02521       191 YLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF  233 (234)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence            7777777777777777777777777777777777776665543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.76  E-value=2.7e-16  Score=160.20  Aligned_cols=203  Identities=20%  Similarity=0.203  Sum_probs=187.1

Q ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 002729           32 RTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAY  111 (887)
Q Consensus        32 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  111 (887)
                      ....+..+|.++...|++++|++.++++++.+|.+..++..+|.++...|++++|++.++++++..|.+..++..++.++
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  109 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL  109 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHH
Q 002729          112 MRKGRLNEAAQCCRQALALN--PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRAL  189 (887)
Q Consensus       112 ~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  189 (887)
                      ...|++++|++.+++++...  +.....+..+|.++...|++++|...+.++++.+|++...+..++.++...|++++|.
T Consensus       110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  189 (234)
T TIGR02521       110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR  189 (234)
T ss_pred             HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence            99999999999999998753  4566788899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 002729          190 QYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP  234 (887)
Q Consensus       190 ~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p  234 (887)
                      ..++++++..|.++..+..++.++...|+.++|..+.+.+....|
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  234 (234)
T TIGR02521       190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP  234 (234)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence            999999998888888888999999999999999998887766543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.76  E-value=5.9e-17  Score=168.90  Aligned_cols=263  Identities=18%  Similarity=0.256  Sum_probs=168.8

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 002729          139 SNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGM  218 (887)
Q Consensus       139 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~  218 (887)
                      +..|..+.+.|...+|.-.|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++.+++..|+..|...|.
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~  368 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL  368 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence            45677888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             hHHHHHHHHHHHhhCCChhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002729          219 PQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLS  298 (887)
Q Consensus       219 ~~~A~~~~~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  298 (887)
                      -.+|+.++.+-+...|....... +.   ..+++..-         ..+.+.             ..+..-.+.|-.+..
T Consensus       369 q~~Al~~L~~Wi~~~p~y~~l~~-a~---~~~~~~~~---------~s~~~~-------------~~l~~i~~~fLeaa~  422 (579)
T KOG1125|consen  369 QNQALKMLDKWIRNKPKYVHLVS-AG---ENEDFENT---------KSFLDS-------------SHLAHIQELFLEAAR  422 (579)
T ss_pred             HHHHHHHHHHHHHhCccchhccc-cC---ccccccCC---------cCCCCH-------------HHHHHHHHHHHHHHH
Confidence            88888888887776554110000 00   00000000         000001             112223334444444


Q ss_pred             cCC--CChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 002729          299 LQP--SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLV  376 (887)
Q Consensus       299 ~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  376 (887)
                      ..|  .++++...||.+|...|+|++|+.+|+.++...|++...|+.||-.+....+.++|+..|++++++.|....+++
T Consensus       423 ~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~Ry  502 (579)
T KOG1125|consen  423 QLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRY  502 (579)
T ss_pred             hCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeeh
Confidence            444  456666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCC----------cHHHHHHHHHHHHhCCCHHHHHH
Q 002729          377 NRGNTYKEIGRVTDAIQDYIRAITIRPT----------MAEAHANLASAYKDSGHVEAAIK  427 (887)
Q Consensus       377 ~l~~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~la~~~~~~g~~~~A~~  427 (887)
                      ++|.++..+|.|++|.+.|-.++.+.+.          +..+|..|=.++..+++.+-+.+
T Consensus       503 NlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~  563 (579)
T KOG1125|consen  503 NLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE  563 (579)
T ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence            6666666666666666666666665332          12456666666666666654433

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.73  E-value=4.3e-15  Score=160.21  Aligned_cols=234  Identities=24%  Similarity=0.317  Sum_probs=122.0

Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--------CCC-hhHHhhHHHHHHHcCChHHHHHHHHHHHhc-----
Q 002729          200 PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT--------RPN-AIAFGNLASTYYERGQADMAILYYKQAIGC-----  265 (887)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----  265 (887)
                      |.-..+...++..|...|++++|+..++.+++.        .|. ......+|..|...+++.+|+.+|++++.+     
T Consensus       196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~  275 (508)
T KOG1840|consen  196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF  275 (508)
T ss_pred             chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence            333345555677777777777777777776665        223 233334666666666666666666666632     


Q ss_pred             ---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--------CChHHHHhHHHHHHHcCChhHHHHHHHHHHhcc
Q 002729          266 ---DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP--------SHPQALTNLGNIYMEWNMLPAAASYYKATLAVT  334 (887)
Q Consensus       266 ---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  334 (887)
                         +|....++.+|+.+|.+.|++++|..++++++++..        .-...+..++.++..++++++|..++++++++.
T Consensus       276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~  355 (508)
T KOG1840|consen  276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY  355 (508)
T ss_pred             CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence               344445666677777777777777777766665421        112234445555555555555555555554431


Q ss_pred             C--------CCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002729          335 T--------GLSAPFNNLAVIYKQQGNYADAISCYNEVLRID--------PLAADGLVNRGNTYKEIGRVTDAIQDYIRA  398 (887)
Q Consensus       335 ~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  398 (887)
                      .        ..+..+.++|.+|..+|++++|.++|+++++..        +.....+..+|..|.+.+++.+|.+.|..+
T Consensus       356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~  435 (508)
T KOG1840|consen  356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA  435 (508)
T ss_pred             HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence            1        122334455555555555555555555554432        111234444555555555555555554444


Q ss_pred             Hhc-------CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 002729          399 ITI-------RPTMAEAHANLASAYKDSGHVEAAIKSYKQAL  433 (887)
Q Consensus       399 l~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  433 (887)
                      ..+       .|+....+.+|+.+|..+|++++|.++.++++
T Consensus       436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  436 KDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            432       12223344445555555555555555444443

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=1.6e-16  Score=158.43  Aligned_cols=293  Identities=23%  Similarity=0.221  Sum_probs=179.4

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCC
Q 002729          105 SNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD  184 (887)
Q Consensus       105 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  184 (887)
                      ...+..+++..+|.+|+..+..+++..|++...|...+..+...+++++|.-..++.+++.|.........++++...++
T Consensus        53 k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~  132 (486)
T KOG0550|consen   53 KEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSD  132 (486)
T ss_pred             HhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHH
Confidence            34444455555555555555555555555555555555555555555555555555555555555444455555544444


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---CC-hhHHhhHHHHHHHcCChHHHHHHHH
Q 002729          185 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR---PN-AIAFGNLASTYYERGQADMAILYYK  260 (887)
Q Consensus       185 ~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~-~~~~~~la~~~~~~g~~~~A~~~~~  260 (887)
                      ..+|.+.++.        ..++           ....|+..+++.....   |. ...-..-+.++...|++++|...--
T Consensus       133 ~i~A~~~~~~--------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~  193 (486)
T KOG0550|consen  133 LIEAEEKLKS--------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAI  193 (486)
T ss_pred             HHHHHHHhhh--------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHH
Confidence            4444444430        0000           1112222222222211   11 2223334455555566666666655


Q ss_pred             HHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchh
Q 002729          261 QAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAP  340 (887)
Q Consensus       261 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  340 (887)
                      ..+++++.+.++.+..|.++....+.+.|+..|++++.++|+...+-...    .                  .|+....
T Consensus       194 ~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~----~------------------~~k~le~  251 (486)
T KOG0550|consen  194 DILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSAS----M------------------MPKKLEV  251 (486)
T ss_pred             HHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHh----h------------------hHHHHHH
Confidence            56666666666666666666666666666666666666665543321110    0                  0111233


Q ss_pred             HhhHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 002729          341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLA----ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAY  416 (887)
Q Consensus       341 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  416 (887)
                      +..-|.-.++.|++.+|.++|.+++.++|++    ...|.+++.+..++|+..+|+...+.+++++|....++...|.++
T Consensus       252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~  331 (486)
T KOG0550|consen  252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCH  331 (486)
T ss_pred             HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence            5566788889999999999999999999976    447888899999999999999999999999999999999999999


Q ss_pred             HhCCCHHHHHHHHHHHHHcCCC
Q 002729          417 KDSGHVEAAIKSYKQALLLRPD  438 (887)
Q Consensus       417 ~~~g~~~~A~~~~~~al~~~p~  438 (887)
                      ...+++++|++.|+++++...+
T Consensus       332 l~le~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  332 LALEKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             HHHHHHHHHHHHHHHHHhhccc
Confidence            9999999999999999988655

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.73  E-value=6.6e-15  Score=158.77  Aligned_cols=237  Identities=24%  Similarity=0.390  Sum_probs=189.7

Q ss_pred             CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---
Q 002729          165 QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL--------KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR---  233 (887)
Q Consensus       165 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---  233 (887)
                      .|.-..+...++..|..+|++++|+..++.+++.        .|.-......+|.+|..++++.+|+.+|++++.+.   
T Consensus       195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~  274 (508)
T KOG1840|consen  195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV  274 (508)
T ss_pred             CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence            4555667777888888888888888888888876        33334455568888888999999999998888752   


Q ss_pred             -----CC-hhHHhhHHHHHHHcCChHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002729          234 -----PN-AIAFGNLASTYYERGQADMAILYYKQAIGC--------DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL  299 (887)
Q Consensus       234 -----p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  299 (887)
                           |. ..++.+|+..|...|++++|..++++++++        .|.-...+..++.++...+++++|..++++++++
T Consensus       275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i  354 (508)
T KOG1840|consen  275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI  354 (508)
T ss_pred             cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence                 22 677888888899999999988888888754        2333456778888999999999999999998876


Q ss_pred             C-----CC---ChHHHHhHHHHHHHcCChhHHHHHHHHHHhcc--------CCCchhHhhHHHHHHHcCCHHHHHHHHHH
Q 002729          300 Q-----PS---HPQALTNLGNIYMEWNMLPAAASYYKATLAVT--------TGLSAPFNNLAVIYKQQGNYADAISCYNE  363 (887)
Q Consensus       300 ~-----p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~  363 (887)
                      .     ++   -+..+.++|.+|..+|++++|.++|++++.+.        +.....++.+|..|.+.+++.+|.+.|.+
T Consensus       355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~  434 (508)
T KOG1840|consen  355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE  434 (508)
T ss_pred             HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence            2     22   35678899999999999999999999998774        22355688899999999999999999998


Q ss_pred             HHhc-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002729          364 VLRI-------DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI  401 (887)
Q Consensus       364 al~~-------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  401 (887)
                      +..+       .|+....+.+|+.+|..+|++++|+++.++++..
T Consensus       435 ~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~  479 (508)
T KOG1840|consen  435 AKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA  479 (508)
T ss_pred             HHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            8765       3444568999999999999999999999988753

>PLN02789 farnesyltranstransferase

Probab=99.72  E-value=2.1e-15  Score=156.23  Aligned_cols=203  Identities=15%  Similarity=0.130  Sum_probs=96.1

Q ss_pred             cCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH--HHHHH
Q 002729           12 SGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLH-DYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDI--DLAIR   88 (887)
Q Consensus        12 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~--~~A~~   88 (887)
                      .+++++|+..++++++.+|.+..+|..++.++..+| ++++++..++++++.+|++..+|..++.++.+.|+.  ++++.
T Consensus        50 ~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~  129 (320)
T PLN02789         50 DERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELE  129 (320)
T ss_pred             CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHH
Confidence            344455555555555555555555555555554444 344555555555555555555555555444444432  34444


Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCh----HHHHHHHHHH
Q 002729           89 YYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQ---GLV----QEAYSCYLEA  161 (887)
Q Consensus        89 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---g~~----~~A~~~~~~a  161 (887)
                      +++++++.+|++..+|...+.++...|+++++++.+.++++.+|.+..+|..++.++...   |.+    ++++.+..++
T Consensus       130 ~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~a  209 (320)
T PLN02789        130 FTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDA  209 (320)
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHH
Confidence            444555555555555555555555555555555555555555555555555544444333   111    2334444444


Q ss_pred             HhhCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002729          162 LRIQPTFAIAWSNLAGLFME----SGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYK  214 (887)
Q Consensus       162 l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~  214 (887)
                      +..+|++..+|+.++.++..    .++..+|.+.+.+++..+|.++.++..++.+|.
T Consensus       210 I~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~  266 (320)
T PLN02789        210 ILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLC  266 (320)
T ss_pred             HHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHH
Confidence            44444444444444444444    222333444444444444444444444444444

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=1.6e-13  Score=143.36  Aligned_cols=427  Identities=12%  Similarity=0.010  Sum_probs=290.5

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 002729           34 DNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMR  113 (887)
Q Consensus        34 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  113 (887)
                      ..++.-...+...|+|++|.+...+++...|++..+......++.+.+.|++|++..++-...... ....+..+.|.++
T Consensus        13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~-~~~~fEKAYc~Yr   91 (652)
T KOG2376|consen   13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVI-NSFFFEKAYCEYR   91 (652)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhc-chhhHHHHHHHHH
Confidence            445555566788899999999999999999999999999999999999999999665543322222 1223688999999


Q ss_pred             cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002729          114 KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYK  193 (887)
Q Consensus       114 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  193 (887)
                      .+..++|+..++   ..++.+.......+.+++++|+|++|..+|+...+.+.++.+............  ...+.  ..
T Consensus        92 lnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a--~l~~~--~~  164 (652)
T KOG2376|consen   92 LNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA--ALQVQ--LL  164 (652)
T ss_pred             cccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH--hhhHH--HH
Confidence            999999999998   456667778899999999999999999999999888766655433222211110  01111  23


Q ss_pred             HHHhhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--------CC--------hhHHhhHHHHHHHcCChHHHH
Q 002729          194 EAVKLKPT-FPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR--------PN--------AIAFGNLASTYYERGQADMAI  256 (887)
Q Consensus       194 ~~l~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------p~--------~~~~~~la~~~~~~g~~~~A~  256 (887)
                      +.....|. +.+.+++.+.++...|+|.+|++.+++++.+.        .+        ......++.++...|+.++|.
T Consensus       165 q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~  244 (652)
T KOG2376|consen  165 QSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS  244 (652)
T ss_pred             HhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence            33333444 56688999999999999999999999994421        11        335567888999999999999


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHHc---CCHH--HHHHHHHHHHhcCCC----------ChHHHHhHHHHHHHcCChh
Q 002729          257 LYYKQAIGCDPRFLEAYNNLGNALKDV---GRVD--EAIQCYNQCLSLQPS----------HPQALTNLGNIYMEWNMLP  321 (887)
Q Consensus       257 ~~~~~~l~~~p~~~~~~~~la~~~~~~---g~~~--~A~~~~~~al~~~p~----------~~~~~~~l~~~~~~~g~~~  321 (887)
                      ..|...+..+|.+........+-+...   .++-  .++..++......++          -..++.+.+.+.+-.+..+
T Consensus       245 ~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~  324 (652)
T KOG2376|consen  245 SIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMD  324 (652)
T ss_pred             HHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            999999988776653322222211111   1111  122222222211111          1234555666666666666


Q ss_pred             HHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH-
Q 002729          322 AAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA-ADGLVNRGNTYKEIGRVTDAIQDYIRAI-  399 (887)
Q Consensus       322 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al-  399 (887)
                      .+.+.....-...|..............+...+.+|.+++....+.+|.. ..+...++.+....|+++.|++.+...+ 
T Consensus       325 q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~  404 (652)
T KOG2376|consen  325 QVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLE  404 (652)
T ss_pred             HHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence            66666555544455443333334444444458999999999999999987 6788899999999999999999999333 


Q ss_pred             -------hcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-------CCCChHHHHHHHHHhhhcCChhhHhHHHHH
Q 002729          400 -------TIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLL-------RPDFPEATCNLLHTLQCVCSWEDRDRMFSE  465 (887)
Q Consensus       400 -------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~  465 (887)
                             +.. ..+.+-..+...+.+.++.+.|...+.+++..       .+.-...+..++..-...|.-+++...+++
T Consensus       405 ~~~ss~~~~~-~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~lee  483 (652)
T KOG2376|consen  405 SWKSSILEAK-HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEE  483 (652)
T ss_pred             hhhhhhhhhc-cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHH
Confidence                   332 23455666777788888777677777666653       222222333444455566888888888887


Q ss_pred             HHHH
Q 002729          466 VEGI  469 (887)
Q Consensus       466 ~~~~  469 (887)
                      +.++
T Consensus       484 l~k~  487 (652)
T KOG2376|consen  484 LVKF  487 (652)
T ss_pred             HHHh
Confidence            7763

>PLN02789 farnesyltranstransferase

Probab=99.71  E-value=4.8e-15  Score=153.62  Aligned_cols=208  Identities=17%  Similarity=0.198  Sum_probs=168.7

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCh--
Q 002729           41 AIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG-DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRL--  117 (887)
Q Consensus        41 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~--  117 (887)
                      .++...+++++|+..+.++++.+|.+..+|..++.++...| ++++++..++++++.+|++..+|...+.++.+.|+.  
T Consensus        45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~  124 (320)
T PLN02789         45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAA  124 (320)
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhh
Confidence            34455677888999999999999999999999999988888 678999999999999999999999888888888764  


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHc---CCH----HHHHH
Q 002729          118 NEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMES---GDL----NRALQ  190 (887)
Q Consensus       118 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~----~~A~~  190 (887)
                      ++++.+++++++.+|++..+|...+.++...|+++++++.+.++++.+|.+..+|+..+.+....   |.+    +++++
T Consensus       125 ~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~  204 (320)
T PLN02789        125 NKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELK  204 (320)
T ss_pred             HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence            67888888999999999999999999999999999999999999999999999998888887665   222    46777


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCC-hhHHhhHHHHHHH
Q 002729          191 YYKEAVKLKPTFPDAYLNLGNVYKA----LGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYE  248 (887)
Q Consensus       191 ~~~~~l~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~-~~~~~~la~~~~~  248 (887)
                      +..+++..+|++..+|..++.++..    .++..+|.+.+.+++...|+ ..++..++.+|..
T Consensus       205 y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~  267 (320)
T PLN02789        205 YTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE  267 (320)
T ss_pred             HHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence            7788888888888888888888877    34456677777777666555 6666666666664

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.68  E-value=1.5e-11  Score=129.59  Aligned_cols=449  Identities=15%  Similarity=0.180  Sum_probs=306.5

Q ss_pred             hhHHHHHHHhcCCHHHHHHHHHHHHhhCC--CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 002729            2 HMALAHQMYKSGSYKQALEHSNSVYERNP--LRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKE   79 (887)
Q Consensus         2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   79 (887)
                      ++.-...+..+|+...-...|++++..-|  .+..+|-.........+-.+-++..|++.++..|...+   .....+.+
T Consensus       105 wl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~e---eyie~L~~  181 (835)
T KOG2047|consen  105 WLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEARE---EYIEYLAK  181 (835)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHH---HHHHHHHh
Confidence            34445677788888888888888887766  34556666666666677777888888888888876533   33445667


Q ss_pred             cCCHHHHHHHHHHHHhcC------------------------CC---------------------cHHHHHHHHHHHHHc
Q 002729           80 KGDIDLAIRYYLVAIELR------------------------PN---------------------FADAWSNLASAYMRK  114 (887)
Q Consensus        80 ~g~~~~A~~~~~~al~~~------------------------p~---------------------~~~~~~~la~~~~~~  114 (887)
                      .+++++|.+.+...+..+                        |+                     -...|..||..|.+.
T Consensus       182 ~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~  261 (835)
T KOG2047|consen  182 SDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRS  261 (835)
T ss_pred             ccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHh
Confidence            777777777776665431                        11                     123577888888899


Q ss_pred             CChHHHHHHHHHHHHhCCC---CHHHH-----HHHHHHHHHcC-------------ChHHHHHHHHHHH-----------
Q 002729          115 GRLNEAAQCCRQALALNPL---LVDAH-----SNLGNLMKAQG-------------LVQEAYSCYLEAL-----------  162 (887)
Q Consensus       115 g~~~~A~~~~~~~l~~~p~---~~~~~-----~~la~~~~~~g-------------~~~~A~~~~~~al-----------  162 (887)
                      |.+++|...|++++..--.   -..++     +.-..+..+++             +.+-....|+..+           
T Consensus       262 g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVl  341 (835)
T KOG2047|consen  262 GLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVL  341 (835)
T ss_pred             hhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHH
Confidence            9999999999888765321   11111     11111111111             1222333344333           


Q ss_pred             -hhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 002729          163 -RIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL-KPTF-----PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN  235 (887)
Q Consensus       163 -~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  235 (887)
                       +.+|++...|.....+  ..|+..+-+..|.++++. +|..     ...|..++..|...|+.+.|..+|+++.+..-.
T Consensus       342 LRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~  419 (835)
T KOG2047|consen  342 LRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK  419 (835)
T ss_pred             HhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc
Confidence             3367777777665554  367788888888888763 4432     347889999999999999999999999876432


Q ss_pred             -----hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCC------------------CcHHHHHHHHHHHHHcCCHHHHHHH
Q 002729          236 -----AIAFGNLASTYYERGQADMAILYYKQAIGCDP------------------RFLEAYNNLGNALKDVGRVDEAIQC  292 (887)
Q Consensus       236 -----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p------------------~~~~~~~~la~~~~~~g~~~~A~~~  292 (887)
                           ...|..-|..-.+..+++.|.++.+++...-.                  .+..+|..++......|-++.....
T Consensus       420 ~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~v  499 (835)
T KOG2047|consen  420 TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAV  499 (835)
T ss_pred             chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHH
Confidence                 67788888888889999999999988873211                  1234677888888888999999999


Q ss_pred             HHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcc--CCCchhHhhHHHHHH---HcCCHHHHHHHHHHHHhc
Q 002729          293 YNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT--TGLSAPFNNLAVIYK---QQGNYADAISCYNEVLRI  367 (887)
Q Consensus       293 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~  367 (887)
                      |++++++.--.|.+..+.|..+.+..-++++.+.|++.+.+.  |...++|+..-..+.   ...+.+.|..+|+++++.
T Consensus       500 YdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~  579 (835)
T KOG2047|consen  500 YDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDG  579 (835)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence            999999888888999999999999999999999999988886  445566665444333   334789999999999998


Q ss_pred             CCCC-H-HHHHHHHHHHHHcCCHHHHHHHHHHH------------------------------------HhcCCCc--HH
Q 002729          368 DPLA-A-DGLVNRGNTYKEIGRVTDAIQDYIRA------------------------------------ITIRPTM--AE  407 (887)
Q Consensus       368 ~p~~-~-~~~~~l~~~~~~~g~~~~A~~~~~~a------------------------------------l~~~p~~--~~  407 (887)
                      .|.. . ..+...+..-.+-|....|+.+|+++                                    ++.-|+.  .+
T Consensus       580 Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~  659 (835)
T KOG2047|consen  580 CPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKARE  659 (835)
T ss_pred             CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHH
Confidence            7632 2 24445555555666666666655554                                    3333332  23


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CC-ChHHHHHHHHHhhhcCC
Q 002729          408 AHANLASAYKDSGHVEAAIKSYKQALLLR-PD-FPEATCNLLHTLQCVCS  455 (887)
Q Consensus       408 ~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~-~~~~~~~l~~~~~~~g~  455 (887)
                      .....+.+-.+.|..+.|+.+|.-.-++. |. +.+.|...-..-...|+
T Consensus       660 mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn  709 (835)
T KOG2047|consen  660 MCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN  709 (835)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence            34556777788888888888888887764 32 45556655555566666

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.68  E-value=1.2e-13  Score=150.50  Aligned_cols=205  Identities=14%  Similarity=0.028  Sum_probs=156.6

Q ss_pred             CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 002729           29 NPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF---AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWS  105 (887)
Q Consensus        29 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  105 (887)
                      +|+.+.++..+|..+...|+.+++.+.+.++.+..+.+   .+.....+..+...|++++|.+.++++++.+|++..++.
T Consensus         2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~   81 (355)
T cd05804           2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK   81 (355)
T ss_pred             CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence            68888888889988888888888888888887776644   456677788888889999999999998888888877666


Q ss_pred             HHHHHHHHcCC----hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHH
Q 002729          106 NLASAYMRKGR----LNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFME  181 (887)
Q Consensus       106 ~la~~~~~~g~----~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  181 (887)
                      . +..+...|+    ...+.+.+......+|........++.++..+|++++|+..++++++..|++..++..++.++..
T Consensus        82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~  160 (355)
T cd05804          82 L-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM  160 (355)
T ss_pred             H-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence            4 444444443    44444444433345566667777788888888888888888888888888888888888888888


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 002729          182 SGDLNRALQYYKEAVKLKPTFPD----AYLNLGNVYKALGMPQEAIMCYQRAVQTRP  234 (887)
Q Consensus       182 ~g~~~~A~~~~~~~l~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p  234 (887)
                      .|++++|+..+++.+...|.++.    .+..++.++...|++++|+..++++....|
T Consensus       161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            88888888888888887664332    455788888888888888888888765555

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional

Probab=99.67  E-value=2.3e-15  Score=164.97  Aligned_cols=156  Identities=14%  Similarity=0.131  Sum_probs=130.1

Q ss_pred             CcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccC
Q 002729          712 DKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSL  789 (887)
Q Consensus       712 ~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~  789 (887)
                      +.+++++++++  .|..+.+++++..+.++.|+.+|+|+|.++. ++.+++.+++.|+ .++|.|.|.++.++...+|+.
T Consensus       221 ~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G~~-~~~l~~~~~~~~l-~~~V~~~G~~~~~el~~~l~~  298 (406)
T PRK15427        221 TPLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIGPW-ERRLRTLIEQYQL-EDVVEMPGFKPSHEVKAMLDD  298 (406)
T ss_pred             CCeEEEEEeCcchhcCHHHHHHHHHHHHhhCCCEEEEEEECchh-HHHHHHHHHHcCC-CCeEEEeCCCCHHHHHHHHHh
Confidence            34567777776  5999999999999988889999999998876 7789999999999 589999999999999999999


Q ss_pred             CcEEecCCC------CCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhc-C
Q 002729          790 ADLFLDTPL------CNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLAL-D  859 (887)
Q Consensus       790 ~d~~ld~~~------~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~--~~~~~y~~~a~~l~~-d  859 (887)
                      +|+++-|+-      +.| +++++|||++|+|||+-......+-+..      |.++ +++  .|.+++.+...++.. |
T Consensus       299 aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g~~E~v~~------~~~G-~lv~~~d~~~la~ai~~l~~~d  371 (406)
T PRK15427        299 ADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSGIPELVEA------DKSG-WLVPENDAQALAQRLAAFSQLD  371 (406)
T ss_pred             CCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCCchhhhcC------CCce-EEeCCCCHHHHHHHHHHHHhCC
Confidence            999999864      255 8999999999999998765554443221      5556 554  589999999999999 9


Q ss_pred             HHHHHHHHHHHHhhccc
Q 002729          860 RQKLQALTNKLKSVRLT  876 (887)
Q Consensus       860 ~~~~~~~~~~~~~~~~~  876 (887)
                      ++.+++++++.|+....
T Consensus       372 ~~~~~~~~~~ar~~v~~  388 (406)
T PRK15427        372 TDELAPVVKRAREKVET  388 (406)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999998876543

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.66  E-value=2.4e-13  Score=147.97  Aligned_cols=204  Identities=20%  Similarity=0.083  Sum_probs=146.2

Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHH
Q 002729           63 EPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF---ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHS  139 (887)
Q Consensus        63 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~  139 (887)
                      +|+.+.++..+|..+...|+.++|.+.+.++.+..+.+   .+.....+..+...|++++|...++++++.+|++..++.
T Consensus         2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~   81 (355)
T cd05804           2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK   81 (355)
T ss_pred             CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence            67888888888888888888888888888877766543   445666777888888888888888888888888876665


Q ss_pred             HHHHHHHHcC----ChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002729          140 NLGNLMKAQG----LVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKA  215 (887)
Q Consensus       140 ~la~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~  215 (887)
                      . +..+...|    ....+.+.+......+|........++.++...|++++|+..++++++..|+++..+..++.++..
T Consensus        82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~  160 (355)
T cd05804          82 L-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM  160 (355)
T ss_pred             H-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence            4 44444433    334444444333345566666777777788888888888888888888888887778888888888


Q ss_pred             cCChHHHHHHHHHHHhhCCC-----hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCC
Q 002729          216 LGMPQEAIMCYQRAVQTRPN-----AIAFGNLASTYYERGQADMAILYYKQAIGCDP  267 (887)
Q Consensus       216 ~g~~~~A~~~~~~~~~~~p~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p  267 (887)
                      .|++++|+..+++.+...|.     ...+..++.++...|++++|+..+++++...|
T Consensus       161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            88888888888887776542     22345677777777777777777777664444

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases

Probab=99.65  E-value=8e-15  Score=160.20  Aligned_cols=319  Identities=13%  Similarity=0.189  Sum_probs=202.9

Q ss_pred             eeeeecCCCCCChhHHhhhHHhhcCCCCCcEEEEEecCCCCChHHHHHHHhhcCceEECCCC--C----HHHHHHHHHhC
Q 002729          538 RVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAM--S----SDMIAKLINED  611 (887)
Q Consensus       538 riGyvs~d~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~i~~~  611 (887)
                      ||-++.+++..--+..++..+.+.+.+.+++|+++....... .....+.....++..+...  .    ...+.+.++..
T Consensus         1 kIl~~~~~~~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (358)
T cd03812           1 KILHIVGTMNRGGIETFIMNYYRNLDRSKIQFDFLVTSKEEG-DYDDEIEKLGGKIYYIPARKKNPLKYFKKLYKLIKKN   79 (358)
T ss_pred             CEEEEeCCCCCccHHHHHHHHHHhcCccceEEEEEEeCCCCc-chHHHHHHcCCeEEEecCCCccHHHHHHHHHHHHhcC
Confidence            577888887222233677888889988889998888654432 2223333322222222111  1    24566677889


Q ss_pred             CCeEEEecCCcCCCCchhhhhcCCCceEEecc-ccCCCCCCCc----------ccEEEecCccCCCCcC--C----CCcc
Q 002729          612 KIQILINLNGYTKGARNEIFAMQPAPIQVSYM-GFPGTTGASY----------IDYLVTDEFVSPLRYA--H----IYSE  674 (887)
Q Consensus       612 ~~dil~~~~~~~~~~~~~~~~~r~apvq~~~~-g~~~t~g~~~----------~d~~~~d~~~~p~~~~--~----~~~e  674 (887)
                      ++||++-.+..+..--..+......|+.+.+. +...+.....          .-+..+|.++.+....  .    ...+
T Consensus        80 ~~Dvv~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~  159 (358)
T cd03812          80 KYDIVHVHGSSASGFILLAAKKAGVKVRIAHSHNTSDSHDKKKKILKYKVLRKLINRLATDYLACSEEAGKWLFGKVKNK  159 (358)
T ss_pred             CCCEEEEeCcchhHHHHHHHhhCCCCeEEEEeccccccccccchhhHHHHHHHHHHhcCCEEEEcCHHHHHHHHhCCCcc
Confidence            99999755444211111111123455544322 1111111110          0011234444443321  1    1235


Q ss_pred             ceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEecCCh
Q 002729          675 KLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPA  752 (887)
Q Consensus       675 ~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~~~  752 (887)
                      ++.-+|++.....+..      .+.....+...+.+++.+++++++++  .|..+.+++++..+.+..|+.+++++|.++
T Consensus       160 ~~~vi~ngvd~~~~~~------~~~~~~~~~~~~~~~~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~  233 (358)
T cd03812         160 KFKVIPNGIDLEKFIF------NEEIRKKRRELGILEDKFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLVGDGE  233 (358)
T ss_pred             cEEEEeccCcHHHcCC------CchhhhHHHHcCCCCCCEEEEEEeccccccChHHHHHHHHHHHHhCCCeEEEEEeCCc
Confidence            6777776543221110      01111124556677788888888876  699999999999999999999999999877


Q ss_pred             hhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHHH
Q 002729          753 AGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSL  831 (887)
Q Consensus       753 ~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~  831 (887)
                      . ...+++.+.+.|+ .++|.|.|.  .++...+|+.+|+++-|+-+.| |++.+|||++|+|||+.......+-++   
T Consensus       234 ~-~~~~~~~~~~~~~-~~~v~~~g~--~~~~~~~~~~adi~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~~~~~i~---  306 (358)
T cd03812         234 L-EEEIKKKVKELGL-EDKVIFLGV--RNDVPELLQAMDVFLFPSLYEGLPLVLIEAQASGLPCILSDTITKEVDLT---  306 (358)
T ss_pred             h-HHHHHHHHHhcCC-CCcEEEecc--cCCHHHHHHhcCEEEecccccCCCHHHHHHHHhCCCEEEEcCCchhhhhc---
Confidence            6 6678888888999 689999998  4566778999999999977777 999999999999999877666555333   


Q ss_pred             HHhcCCCCcccc-CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 002729          832 CLATGLGEEMIV-NSMKEYEERAVSLALDRQKLQALTNKLKSVR  874 (887)
Q Consensus       832 l~~~g~~~~~~~-~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~~  874 (887)
                        . |..- ++. ++++++.+...++.+|++.++.++...+...
T Consensus       307 --~-~~~~-~~~~~~~~~~a~~i~~l~~~~~~~~~~~~~~~~~~  346 (358)
T cd03812         307 --D-LVKF-LSLDESPEIWAEEILKLKSEDRRERSSESIKKKGL  346 (358)
T ss_pred             --c-CccE-EeCCCCHHHHHHHHHHHHhCcchhhhhhhhhhccc
Confidence              2 2222 444 4569999999999999999988887776554

capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.65  E-value=3e-11  Score=127.42  Aligned_cols=414  Identities=14%  Similarity=0.173  Sum_probs=229.4

Q ss_pred             HHHHHHHHhhCCCchhHHHHHHHHHHhc--------CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 002729           19 LEHSNSVYERNPLRTDNLLLLGAIYYQL--------HDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYY   90 (887)
Q Consensus        19 ~~~~~~~l~~~p~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~   90 (887)
                      .-+|+++++.-|.+...|+..-..-...        ..|..--..|++++-.-.+-+..|......+..+|+...-...|
T Consensus        46 ~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tf  125 (835)
T KOG2047|consen   46 NLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTF  125 (835)
T ss_pred             HHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHH
Confidence            3456666666666665555433221111        12344444455555444444555666666666666666666666


Q ss_pred             HHHHhcCCC--cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-----
Q 002729           91 LVAIELRPN--FADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALR-----  163 (887)
Q Consensus        91 ~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----  163 (887)
                      ++++..-|-  +...|-.........+-.+-++..|++.++.+|...   ......+...++.++|.+.+...+.     
T Consensus       126 drALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~---eeyie~L~~~d~~~eaa~~la~vln~d~f~  202 (835)
T KOG2047|consen  126 DRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAR---EEYIEYLAKSDRLDEAAQRLATVLNQDEFV  202 (835)
T ss_pred             HHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHH---HHHHHHHHhccchHHHHHHHHHhcCchhhh
Confidence            666655442  333444444444455555555555555555555432   2233344444555555444433332     


Q ss_pred             ---------------------------------------hCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---
Q 002729          164 ---------------------------------------IQPTF-AIAWSNLAGLFMESGDLNRALQYYKEAVKLKP---  200 (887)
Q Consensus       164 ---------------------------------------~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~---  200 (887)
                                                             ..++. ...|..|+..|.+.|.+++|...|++++..--   
T Consensus       203 sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvr  282 (835)
T KOG2047|consen  203 SKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVR  282 (835)
T ss_pred             hhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehh
Confidence                                                   22221 34677888888888888888888888876421   


Q ss_pred             CCHHHHHHHH-----HHHHH-------cC------ChHHHHHHHHHHHhh------------CCC-hhHHhhHHHHHHHc
Q 002729          201 TFPDAYLNLG-----NVYKA-------LG------MPQEAIMCYQRAVQT------------RPN-AIAFGNLASTYYER  249 (887)
Q Consensus       201 ~~~~~~~~l~-----~~~~~-------~g------~~~~A~~~~~~~~~~------------~p~-~~~~~~la~~~~~~  249 (887)
                      +...++...+     .+-.+       .+      +.+-....|+.++..            +|+ ...|....  -+..
T Consensus       283 DFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e  360 (835)
T KOG2047|consen  283 DFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRV--KLYE  360 (835)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhh--hhhc
Confidence            1111111111     00000       11      112233344444432            232 33443333  3345


Q ss_pred             CChHHHHHHHHHHH-hcCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----ChHHHHhHHHHHHHcCC
Q 002729          250 GQADMAILYYKQAI-GCDPRF-----LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS----HPQALTNLGNIYMEWNM  319 (887)
Q Consensus       250 g~~~~A~~~~~~~l-~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~g~  319 (887)
                      |+..+-+..|.+++ ..+|..     ...|..+|..|...|+.+.|..+|+++.+..-.    -..+|...|..-.+..+
T Consensus       361 ~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~  440 (835)
T KOG2047|consen  361 GNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHEN  440 (835)
T ss_pred             CChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhh
Confidence            66666677776666 334432     245677777777777777777777777765322    14567777777777777


Q ss_pred             hhHHHHHHHHHHhccCC------------------CchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 002729          320 LPAAASYYKATLAVTTG------------------LSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNT  381 (887)
Q Consensus       320 ~~~A~~~~~~~~~~~~~------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  381 (887)
                      ++.|.++.+.+......                  +...|..++......|-++.-...|++++++.--.|....+.|..
T Consensus       441 ~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmf  520 (835)
T KOG2047|consen  441 FEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMF  520 (835)
T ss_pred             HHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            77777777766543211                  233466677777777777777777777777776677777777777


Q ss_pred             HHHcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHH-h--CCCHHHHHHHHHHHHHcCC
Q 002729          382 YKEIGRVTDAIQDYIRAITIR--PTMAEAHANLASAYK-D--SGHVEAAIKSYKQALLLRP  437 (887)
Q Consensus       382 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~-~--~g~~~~A~~~~~~al~~~p  437 (887)
                      +....-++++.+.|++.+.+.  |.-.++|...-.-.. +  .-+.+.|+.+|+++++..|
T Consensus       521 LEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp  581 (835)
T KOG2047|consen  521 LEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP  581 (835)
T ss_pred             HHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence            777777777777777777764  444455544332222 2  2266777777777777665

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.64  E-value=3.6e-12  Score=139.78  Aligned_cols=296  Identities=18%  Similarity=0.151  Sum_probs=220.4

Q ss_pred             hhHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002729            2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG   81 (887)
Q Consensus         2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g   81 (887)
                      .+..+..+...|++++|++.+++....-.+....+-..|.++.++|++++|...|...++.+|++...+..+..+.....
T Consensus         7 lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~   86 (517)
T PF12569_consen    7 LLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQL   86 (517)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhc
Confidence            35567889999999999999999888888888999999999999999999999999999999999999999998884333


Q ss_pred             -----CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 002729           82 -----DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLN-EAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAY  155 (887)
Q Consensus        82 -----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~  155 (887)
                           +.+.-..+|++..+..|..... ..+...+..-..+. .+..++...+..+  -|..+..+-.+|....+..-..
T Consensus        87 ~~~~~~~~~~~~~y~~l~~~yp~s~~~-~rl~L~~~~g~~F~~~~~~yl~~~l~Kg--vPslF~~lk~Ly~d~~K~~~i~  163 (517)
T PF12569_consen   87 QLSDEDVEKLLELYDELAEKYPRSDAP-RRLPLDFLEGDEFKERLDEYLRPQLRKG--VPSLFSNLKPLYKDPEKAAIIE  163 (517)
T ss_pred             ccccccHHHHHHHHHHHHHhCccccch-hHhhcccCCHHHHHHHHHHHHHHHHhcC--CchHHHHHHHHHcChhHHHHHH
Confidence                 5677788888888888774322 22222222222333 3344445554443  4555666656665444433333


Q ss_pred             HHHHHHHhh---------------CCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 002729          156 SCYLEALRI---------------QPTFA--IAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGM  218 (887)
Q Consensus       156 ~~~~~al~~---------------~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~  218 (887)
                      .++......               .|...  .+++.+++.|...|++++|+++++++++..|..++.+...|.++...|+
T Consensus       164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~  243 (517)
T PF12569_consen  164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGD  243 (517)
T ss_pred             HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC
Confidence            333333221               12222  4567889999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhCCC-hhHHhhHHHHHHHcCChHHHHHHHHHHHhcC--CCc-------HHHHHHHHHHHHHcCCHHH
Q 002729          219 PQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCD--PRF-------LEAYNNLGNALKDVGRVDE  288 (887)
Q Consensus       219 ~~~A~~~~~~~~~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~-------~~~~~~la~~~~~~g~~~~  288 (887)
                      +.+|.+.++.+-+++.. -..-...+..+.+.|+.++|.+.+......+  |..       .......|.+|.+.|++..
T Consensus       244 ~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~  323 (517)
T PF12569_consen  244 LKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL  323 (517)
T ss_pred             HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            99999999999998887 4455566778889999999999988776543  211       1223456899999999999


Q ss_pred             HHHHHHHHHhcC
Q 002729          289 AIQCYNQCLSLQ  300 (887)
Q Consensus       289 A~~~~~~al~~~  300 (887)
                      |++.|..+.+..
T Consensus       324 ALk~~~~v~k~f  335 (517)
T PF12569_consen  324 ALKRFHAVLKHF  335 (517)
T ss_pred             HHHHHHHHHHHH
Confidence            999998887753

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.64  E-value=3.8e-13  Score=128.46  Aligned_cols=284  Identities=18%  Similarity=0.162  Sum_probs=206.7

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 002729            7 HQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLA   86 (887)
Q Consensus         7 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A   86 (887)
                      ..+.+..+|..|++++..-.+.+|.+...+..+|.||+...+|..|..+|++.-...|......+..+..+++.+.+.+|
T Consensus        18 y~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADA   97 (459)
T KOG4340|consen   18 YRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADA   97 (459)
T ss_pred             HHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHH
Confidence            45588899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 002729           87 IRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP  166 (887)
Q Consensus        87 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  166 (887)
                      +.+...+...+.-.......-+.+.+..+++..+..+.++.-  ..++.+...+.|.+.++.|++++|.+-|+.+++...
T Consensus        98 LrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsG  175 (459)
T KOG4340|consen   98 LRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSG  175 (459)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeeccccHHHHHHHHHHHHhhcC
Confidence            999888765422234455566677778888888877776642  125677888999999999999999999999999988


Q ss_pred             ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCC-------------------------HHHHHHHHHHHHHcC
Q 002729          167 TFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK----PTF-------------------------PDAYLNLGNVYKALG  217 (887)
Q Consensus       167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----~~~-------------------------~~~~~~l~~~~~~~g  217 (887)
                      -++..-++++.+.++.+++..|+++..+.++..    |..                         .++++..+-++++.+
T Consensus       176 yqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~  255 (459)
T KOG4340|consen  176 YQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLR  255 (459)
T ss_pred             CCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcc
Confidence            888888999999999999999999988887642    221                         113344445555566


Q ss_pred             ChHHHHHHHHHHHhhCC---ChhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 002729          218 MPQEAIMCYQRAVQTRP---NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY  293 (887)
Q Consensus       218 ~~~~A~~~~~~~~~~~p---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  293 (887)
                      +++.|.+.+..+.-...   ++.++.+++..-. .+++.+...-++-.++++|-..+++.++..+|++..-++-|..++
T Consensus       256 n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvL  333 (459)
T KOG4340|consen  256 NYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVL  333 (459)
T ss_pred             cHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHH
Confidence            66655555443322111   1334444433221 233444444455555556655555666666666555555555444

>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose

Probab=99.62  E-value=2.7e-14  Score=156.28  Aligned_cols=319  Identities=13%  Similarity=0.107  Sum_probs=196.3

Q ss_pred             eeeeecCCCCCChhHHhhhHHhhcCCCCCcEEEEEecCCCCCh-HHHHHHHhhc-CceEECCCCCHHH---H----HHH-
Q 002729          538 RVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGT-EWRQRTQSEA-EHFVDVSAMSSDM---I----AKL-  607 (887)
Q Consensus       538 riGyvs~d~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~---~----~~~-  607 (887)
                      ||.++++.+..--+...+..+.+.+++.++||.++...+..+. .....+.... ....   .++...   .    ... 
T Consensus         1 ki~~~~~~~~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~   77 (372)
T cd03792           1 KVLHVNSTPYGGGVAEILHSLVPLMRDLGVDTRWEVIKGDPEFFNVTKKFHNALQGADI---ELSEEEKEIYLEWNEENA   77 (372)
T ss_pred             CeEEEeCCCCCCcHHHHHHHHHHHHHHcCCCceEEecCCChhHHHHHHHhhHhhcCCCC---CCCHHHHHHHHHHHHHHh
Confidence            6888888875555667888889999998999888876553321 1112222211 1111   222211   1    111 


Q ss_pred             ---HHhCCCeEEEecCCcCCCCchhhhhcC-CCceEEeccccCCCC----------CCCcccEEEecCccCCCCcCCCCc
Q 002729          608 ---INEDKIQILINLNGYTKGARNEIFAMQ-PAPIQVSYMGFPGTT----------GASYIDYLVTDEFVSPLRYAHIYS  673 (887)
Q Consensus       608 ---i~~~~~dil~~~~~~~~~~~~~~~~~r-~apvq~~~~g~~~t~----------g~~~~d~~~~d~~~~p~~~~~~~~  673 (887)
                         +...++||++--+.+.  .-+..+..+ ..|+.+++-+...+.          .+...|.+++-.   +......+.
T Consensus        78 ~~~~~~~~~Dvv~~h~~~~--~~~~~~~~~~~~~~i~~~H~~~~~~~~~~~~~~~~~~~~~d~~i~~~---~~~~~~~~~  152 (372)
T cd03792          78 ERPLLDLDADVVVIHDPQP--LALPLFKKKRGRPWIWRCHIDLSSPNRRVWDFLQPYIEDYDAAVFHL---PEYVPPQVP  152 (372)
T ss_pred             ccccccCCCCEEEECCCCc--hhHHHhhhcCCCeEEEEeeeecCCCcHHHHHHHHHHHHhCCEEeecH---HHhcCCCCC
Confidence               2256899996432221  112222223 567655442222111          011233333211   111122222


Q ss_pred             cceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEecCC
Q 002729          674 EKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFP  751 (887)
Q Consensus       674 e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~~  751 (887)
                      .+...+|++.-......  ....+......|.++|++++.+++++++|+  .|..+.+++++..+.+..|+.+|+++|.+
T Consensus       153 ~~~~vipngvd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g  230 (372)
T cd03792         153 PRKVIIPPSIDPLSGKN--RELSPADIEYILEKYGIDPERPYITQVSRFDPWKDPFGVIDAYRKVKERVPDPQLVLVGSG  230 (372)
T ss_pred             CceEEeCCCCCCCcccc--CCCCHHHHHHHHHHhCCCCCCcEEEEEeccccccCcHHHHHHHHHHHhhCCCCEEEEEeCC
Confidence            22236776543211000  000000011246678998888888888887  59999999999999888899999999976


Q ss_pred             hhh----HHHHHHHHHHcCCCCCcEEEcCCC--CcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccchh
Q 002729          752 AAG----EMRLRAYAVAQGVQPDQIIFTDVA--MKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMA  824 (887)
Q Consensus       752 ~~~----~~~l~~~~~~~g~~~~r~~~~~~~--~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~  824 (887)
                      +..    ...+++..+..|+ .++|.|.|..  +..+...+|+.+|+++-|..++| |.+++|||++|+|||+.......
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~~~  309 (372)
T cd03792         231 ATDDPEGWIVYEEVLEYAEG-DPDIHVLTLPPVSDLEVNALQRASTVVLQKSIREGFGLTVTEALWKGKPVIAGPVGGIP  309 (372)
T ss_pred             CCCCchhHHHHHHHHHHhCC-CCCeEEEecCCCCHHHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcCCCEEEcCCCCch
Confidence            531    2223444445677 5789999876  67788889999999999988888 99999999999999986655444


Q ss_pred             hhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 002729          825 TRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVR  874 (887)
Q Consensus       825 ~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~~  874 (887)
                      .-+.      =|..+ +++.+.++......++.+|++.++.++++.++..
T Consensus       310 ~~i~------~~~~g-~~~~~~~~~a~~i~~ll~~~~~~~~~~~~a~~~~  352 (372)
T cd03792         310 LQIE------DGETG-FLVDTVEEAAVRILYLLRDPELRRKMGANAREHV  352 (372)
T ss_pred             hhcc------cCCce-EEeCCcHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence            3221      25666 7788888888888889999999999988887754

The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.

>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases

Probab=99.62  E-value=1.2e-14  Score=160.75  Aligned_cols=164  Identities=17%  Similarity=0.088  Sum_probs=134.1

Q ss_pred             CCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhc---CCceEEEecCChhh-------HHHHHHHHHH-cCCCCC
Q 002729          704 RSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRV---PNSALWLLRFPAAG-------EMRLRAYAVA-QGVQPD  770 (887)
Q Consensus       704 r~~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~---p~~~l~~~~~~~~~-------~~~l~~~~~~-~g~~~~  770 (887)
                      +...+.+++.++|++++++  .|..+.+++++.++.+..   |+.+|+++|.++..       .+.+++.+.+ .|+ .+
T Consensus       202 ~~~~~~~~~~~~i~~~grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l-~~  280 (392)
T cd03805         202 PGLLIPKSGKKTFLSINRFERKKNIALAIEAFAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLL-ED  280 (392)
T ss_pred             ccccccCCCceEEEEEeeecccCChHHHHHHHHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCC-Cc
Confidence            3445567778888888886  589999999999998886   89999999976431       2577888888 899 59


Q ss_pred             cEEEcCCCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCccccCCHHHH
Q 002729          771 QIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEY  849 (887)
Q Consensus       771 r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~~~~~~y  849 (887)
                      +|+|.|.++.++....|..+|++|-|..+.| |++.+|||++|+|||+.......+.+..      |-.+.++..|++++
T Consensus       281 ~V~f~g~~~~~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~~~e~i~~------~~~g~~~~~~~~~~  354 (392)
T cd03805         281 QVIFLPSISDSQKELLLSSARALLYTPSNEHFGIVPLEAMYAGKPVIACNSGGPLETVVD------GETGFLCEPTPEEF  354 (392)
T ss_pred             eEEEeCCCChHHHHHHHhhCeEEEECCCcCCCCchHHHHHHcCCCEEEECCCCcHHHhcc------CCceEEeCCCHHHH
Confidence            9999999999999999999999999877777 9999999999999998776655554432      33452444789999


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhhc
Q 002729          850 EERAVSLALDRQKLQALTNKLKSVR  874 (887)
Q Consensus       850 ~~~a~~l~~d~~~~~~~~~~~~~~~  874 (887)
                      .+....+..|++.+.+++++.++..
T Consensus       355 a~~i~~l~~~~~~~~~~~~~a~~~~  379 (392)
T cd03805         355 AEAMLKLANDPDLADRMGAAGRKRV  379 (392)
T ss_pred             HHHHHHHHhChHHHHHHHHHHHHHH
Confidence            9999999999999999998887654

ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.

>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases

Probab=99.62  E-value=1.1e-14  Score=160.75  Aligned_cols=311  Identities=10%  Similarity=0.069  Sum_probs=192.0

Q ss_pred             eeeeecCCCCCChhH--HhhhHHhhcCCCCCcEEEEEecCCCCChHHHHHHHhhcC-ceEECC-----------CCCHHH
Q 002729          538 RVGYVSSDFGNHPLS--HLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAE-HFVDVS-----------AMSSDM  603 (887)
Q Consensus       538 riGyvs~d~~~h~~~--~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----------~~~~~~  603 (887)
                      ||-+|+..+..+.-|  ..+..+.+.+.+.++||++++........ .......+. ++....           ......
T Consensus         1 kI~~v~~~~~p~~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~-~~~~~~~i~v~~~p~~~~~~~~~~~~~~~~~~~   79 (398)
T cd03796           1 RICMVSDFFYPNLGGVETHIYQLSQCLIKRGHKVVVITHAYGNRVG-IRYLTNGLKVYYLPFVVFYNQSTLPTFFGTFPL   79 (398)
T ss_pred             CeeEEeeccccccccHHHHHHHHHHHHHHcCCeeEEEeccCCcCCC-cccccCceeEEEecceeccCCccccchhhhHHH
Confidence            466777766555433  56777777887778999999854221100 000111000 111110           011345


Q ss_pred             HHHHHHhCCCeEEEecCCcCCCCchhhh--hcCCCceEEecccc---CCCCC----------CCcccEEEecC-c-cCCC
Q 002729          604 IAKLINEDKIQILINLNGYTKGARNEIF--AMQPAPIQVSYMGF---PGTTG----------ASYIDYLVTDE-F-VSPL  666 (887)
Q Consensus       604 ~~~~i~~~~~dil~~~~~~~~~~~~~~~--~~r~apvq~~~~g~---~~t~g----------~~~~d~~~~d~-~-~~p~  666 (887)
                      +.+.+...++||++--+.+....-..++  .....|+..+.-+.   +....          ....|.+++-. . ..-.
T Consensus        80 l~~~~~~~~~DiIh~~~~~~~~~~~~~~~~~~~~~~~v~t~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~  159 (398)
T cd03796          80 LRNILIRERITIVHGHQAFSALAHEALLHARTMGLKTVFTDHSLFGFADASSIHTNKLLRFSLADVDHVICVSHTSKENT  159 (398)
T ss_pred             HHHHHHhcCCCEEEECCCCchHHHHHHHHhhhcCCcEEEEecccccccchhhHHhhHHHHHhhccCCEEEEecHhHhhHH
Confidence            6777788899999533322211101112  22346776664332   11110          12344444311 1 1000


Q ss_pred             -CcCCCCccceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCc
Q 002729          667 -RYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNS  743 (887)
Q Consensus       667 -~~~~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~  743 (887)
                       .......+++..+|++.....+.        +....      .+++.+++++++++  .|..+.+++++..+.+..|+.
T Consensus       160 ~~~~~~~~~k~~vi~ngvd~~~f~--------~~~~~------~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~~  225 (398)
T cd03796         160 VLRASLDPERVSVIPNAVDSSDFT--------PDPSK------RDNDKITIVVISRLVYRKGIDLLVGIIPEICKKHPNV  225 (398)
T ss_pred             HHHhCCChhhEEEEcCccCHHHcC--------CCccc------CCCCceEEEEEeccchhcCHHHHHHHHHHHHhhCCCE
Confidence             00112245777788754321111        11000      23466788888876  599999999999998899999


Q ss_pred             eEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccc
Q 002729          744 ALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEK  822 (887)
Q Consensus       744 ~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~  822 (887)
                      +|+++|.++. .+.+++.+.+.|+ .++|.|.|..+.++....|..+|+++-|+.+.| |.+++|||+||+|||+-....
T Consensus       226 ~l~i~G~g~~-~~~l~~~~~~~~l-~~~v~~~G~~~~~~~~~~l~~ad~~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg  303 (398)
T cd03796         226 RFIIGGDGPK-RILLEEMREKYNL-QDRVELLGAVPHERVRDVLVQGHIFLNTSLTEAFCIAIVEAASCGLLVVSTRVGG  303 (398)
T ss_pred             EEEEEeCCch-HHHHHHHHHHhCC-CCeEEEeCCCCHHHHHHHHHhCCEEEeCChhhccCHHHHHHHHcCCCEEECCCCC
Confidence            9999998775 6788999999999 589999999999999999999999999976766 999999999999999876555


Q ss_pred             hhhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 002729          823 MATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKS  872 (887)
Q Consensus       823 ~~~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l~~d~~~~~~~~~~~~~  872 (887)
                      ..+-+..      |-.- ++..|.+++++...++..+......++.+.++
T Consensus       304 ~~e~i~~------~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~  346 (398)
T cd03796         304 IPEVLPP------DMIL-LAEPDVESIVRKLEEAISILRTGKHDPWSFHN  346 (398)
T ss_pred             chhheeC------Ccee-ecCCCHHHHHHHHHHHHhChhhhhhHHHHHHH
Confidence            5553331      2112 45578999999999998876655444444443

Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.

>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases

Probab=99.62  E-value=4.4e-14  Score=154.90  Aligned_cols=318  Identities=17%  Similarity=0.149  Sum_probs=198.4

Q ss_pred             eeeeecCCCC-CChhHHhhhHHhhcCCCCCcEEEEEecCCCCChHHHHHHHhhcCceEECCCCCHHHHHHHHHhCCCeEE
Q 002729          538 RVGYVSSDFG-NHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSDMIAKLINEDKIQIL  616 (887)
Q Consensus       538 riGyvs~d~~-~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dil  616 (887)
                      ||+||++... ..=+..++..+.+.+.+.+.+|.++...............................+.+.++..++||+
T Consensus         1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dii   80 (366)
T cd03822           1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAALYPSLLYGGEQEVVRVIVLDNPLDYRRAARAIRLSGPDVV   80 (366)
T ss_pred             CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcccCCCcccceeeeecCCchhHHHHHHHHhhcCCCEE
Confidence            6899987654 222446888888888888888877775543221111000000111111122235677889999999999


Q ss_pred             EecCCcCC--CCchhhhh----cCCCceEEecccc-CCCCCC--Ccc---cEEEecCccCCC-C-c----CCCCccceee
Q 002729          617 INLNGYTK--GARNEIFA----MQPAPIQVSYMGF-PGTTGA--SYI---DYLVTDEFVSPL-R-Y----AHIYSEKLVH  678 (887)
Q Consensus       617 ~~~~~~~~--~~~~~~~~----~r~apvq~~~~g~-~~t~g~--~~~---d~~~~d~~~~p~-~-~----~~~~~e~~~~  678 (887)
                      +-...+..  +.....+.    .+..|+.++.-+. +.....  ..+   -+..+|.++.++ . .    ...+.+++..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~  160 (366)
T cd03822          81 VIQHEYGIFGGEAGLYLLLLLRGLGIPVVVTLHTVLLHEPRPGDRALLRLLLRRADAVIVMSSELLRALLLRAYPEKIAV  160 (366)
T ss_pred             EEeeccccccchhhHHHHHHHhhcCCCEEEEEecCCccccchhhhHHHHHHHhcCCEEEEeeHHHHHHHHhhcCCCcEEE
Confidence            86542211  11111111    2557777766554 221111  000   011223333332 1 1    2223578888


Q ss_pred             cCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEecCChhhHH
Q 002729          679 VPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEM  756 (887)
Q Consensus       679 lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~  756 (887)
                      +|++.....+.        +  ...+...+.+.+.+++++++++  .|..+.+++++.++.++.|+.+|+++|.+.....
T Consensus       161 i~~~~~~~~~~--------~--~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~~~~~~~~~~l~i~G~~~~~~~  230 (366)
T cd03822         161 IPHGVPDPPAE--------P--PESLKALGGLDGRPVLLTFGLLRPYKGLELLLEALPLLVAKHPDVRLLVAGETHPDLE  230 (366)
T ss_pred             eCCCCcCcccC--------C--chhhHhhcCCCCCeEEEEEeeccCCCCHHHHHHHHHHHHhhCCCeEEEEeccCccchh
Confidence            88755322111        0  1111223344556666666665  5889999999999999899999999997654222


Q ss_pred             HHH----HHHHHcCCCCCcEEEcCC-CCcHHHHHhccCCcEEecCCCCC--C-chhHHHHHHhCCceeeecccchhhhhH
Q 002729          757 RLR----AYAVAQGVQPDQIIFTDV-AMKQEHIRRSSLADLFLDTPLCN--A-HTTGTDILWAGLPMITLPLEKMATRVA  828 (887)
Q Consensus       757 ~l~----~~~~~~g~~~~r~~~~~~-~~~~~~~~~~~~~d~~ld~~~~~--g-~~t~~eal~~gvPvvt~~g~~~~~r~~  828 (887)
                      ...    +.+.+.|+ .++|+|.|. ++.++....|+.+|+++-|+.+.  | |.+.+|||++|+|||+.+... ...+ 
T Consensus       231 ~~~~~~~~~i~~~~~-~~~v~~~~~~~~~~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-~~~i-  307 (366)
T cd03822         231 RYRGEAYALAERLGL-ADRVIFINRYLPDEELPELFSAADVVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-AEEV-  307 (366)
T ss_pred             hhhhhhHhHHHhcCC-CCcEEEecCcCCHHHHHHHHhhcCEEEecccccccccchHHHHHHHcCCCEEecCCCC-hhee-
Confidence            222    23778898 689999987 88999999999999999998777  6 899999999999999866543 2211 


Q ss_pred             HHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 002729          829 GSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVR  874 (887)
Q Consensus       829 ~~~l~~~g~~~~~~~--~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~~  874 (887)
                          .. +-.+ +++  .|.+++++....+.+|++.+.+++++.+...
T Consensus       308 ----~~-~~~g-~~~~~~d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  349 (366)
T cd03822         308 ----LD-GGTG-LLVPPGDPAALAEAIRRLLADPELAQALRARAREYA  349 (366)
T ss_pred             ----ee-CCCc-EEEcCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHH
Confidence                11 3334 444  5799999999999999999999999887754

ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.

>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases

Probab=99.61  E-value=6.1e-14  Score=154.71  Aligned_cols=206  Identities=11%  Similarity=0.076  Sum_probs=144.2

Q ss_pred             ecCccCCCCc-----CCCCccceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCC---CCCCCHHHH
Q 002729          659 TDEFVSPLRY-----AHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQ---LYKMDPEIF  730 (887)
Q Consensus       659 ~d~~~~p~~~-----~~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~---~~k~~~~~~  730 (887)
                      +|.++.|+..     ...+.+++..+|++.....+...     +......+...+++++.++++..+|   ..|..+.++
T Consensus       157 ad~vi~~s~~~~~~~~~~~~~ki~vI~ngvd~~~f~~~-----~~~~~~~~~~~~~~~~~~~i~~vgR~l~~~Kg~~~ll  231 (396)
T cd03818         157 ADAGVSPTRWQRSTFPAELRSRISVIHDGIDTDRLRPD-----PQARLRLPNGRVLTPGDEVITFVARNLEPYRGFHVFM  231 (396)
T ss_pred             CCEEECCCHHHHhhCcHhhccceEEeCCCccccccCCC-----chhhhcccccccCCCCCeEEEEECCCcccccCHHHHH
Confidence            3555555442     22345788888886643222110     0111112333445566666666665   469999999


Q ss_pred             HHHHHHHhhcCCceEEEecCCh--------hhHHHHHHHHHHcCC--CCCcEEEcCCCCcHHHHHhccCCcEEecC-CCC
Q 002729          731 NTWCNILRRVPNSALWLLRFPA--------AGEMRLRAYAVAQGV--QPDQIIFTDVAMKQEHIRRSSLADLFLDT-PLC  799 (887)
Q Consensus       731 ~~~~~il~~~p~~~l~~~~~~~--------~~~~~l~~~~~~~g~--~~~r~~~~~~~~~~~~~~~~~~~d~~ld~-~~~  799 (887)
                      +++.++.++.|+.+|+|+|.+.        ..........++.+.  +.++|+|+|.++.++...+|+.+|+++-| .|+
T Consensus       232 ~a~~~l~~~~~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e  311 (396)
T cd03818         232 RALPRLLRARPDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRLDLSRVHFLGRVPYDQYLALLQVSDVHVYLTYPF  311 (396)
T ss_pred             HHHHHHHHHCCCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhcccCcceEEEeCCCCHHHHHHHHHhCcEEEEcCccc
Confidence            9999999999999999998632        111122233334442  35899999999999999999999999998 555


Q ss_pred             CCchhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhccc
Q 002729          800 NAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVRLT  876 (887)
Q Consensus       800 ~g~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~--~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~~~~  876 (887)
                      +-|.+++|||+||+|||+.......+-+..      |.++ +++  .|++++.+...++.+|++.+.+++++.|+....
T Consensus       312 ~~~~~llEAmA~G~PVIas~~~g~~e~i~~------~~~G-~lv~~~d~~~la~~i~~ll~~~~~~~~l~~~ar~~~~~  383 (396)
T cd03818         312 VLSWSLLEAMACGCLVVGSDTAPVREVITD------GENG-LLVDFFDPDALAAAVIELLDDPARRARLRRAARRTALR  383 (396)
T ss_pred             ccchHHHHHHHCCCCEEEcCCCCchhhccc------CCce-EEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence            559999999999999998776655554432      5566 554  589999999999999999999999998876543

ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.61  E-value=1e-12  Score=125.58  Aligned_cols=385  Identities=15%  Similarity=0.080  Sum_probs=264.3

Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHH
Q 002729           43 YYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQ  122 (887)
Q Consensus        43 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  122 (887)
                      +.+..+|..|++++..-.+.+|++...+..+|.||+...+|..|..+|++.-...|.........++.+++.+.+..|+.
T Consensus        20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr   99 (459)
T KOG4340|consen   20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR   99 (459)
T ss_pred             HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence            46778899999999999999999999999999999999999999999999999999999888999999999999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002729          123 CCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF  202 (887)
Q Consensus       123 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~  202 (887)
                      +...+.....-.......-+.+.+..+++..+....++.-  ..++.....+.|.+.++.|++++|.+-|+.+++...-+
T Consensus       100 V~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq  177 (459)
T KOG4340|consen  100 VAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ  177 (459)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeeccccHHHHHHHHHHHHhhcCCC
Confidence            9887755422233455556677778888888777665532  12567788899999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhh----CCC--------------------------hhHHhhHHHHHHHcCCh
Q 002729          203 PDAYLNLGNVYKALGMPQEAIMCYQRAVQT----RPN--------------------------AIAFGNLASTYYERGQA  252 (887)
Q Consensus       203 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~--------------------------~~~~~~la~~~~~~g~~  252 (887)
                      +-.-++++.++++.+++..|+++..++++.    .|.                          .++++..+.++++.+++
T Consensus       178 pllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~  257 (459)
T KOG4340|consen  178 PLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNY  257 (459)
T ss_pred             chhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccH
Confidence            899999999999999999999999888763    221                          23445556777788888


Q ss_pred             HHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHH
Q 002729          253 DMAILYYKQAIGCDP--RFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT  330 (887)
Q Consensus       253 ~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  330 (887)
                      +.|.+.+..+-....  -++.++.+++..- ..+++.+..+-+.-.+.++|-.++.+-++-.+|++..-++-|...+.+ 
T Consensus       258 eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE-  335 (459)
T KOG4340|consen  258 EAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE-  335 (459)
T ss_pred             HHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh-
Confidence            888776665542111  1233444444332 235566677777777777887777888888888887777777665533 


Q ss_pred             HhccCCCc-----hhHhhHHHHH-HHcCCHHHHHHHHHHHHhcCCCCHHHHHHH-HHHHHH--c---CCHHHHHHHHHHH
Q 002729          331 LAVTTGLS-----APFNNLAVIY-KQQGNYADAISCYNEVLRIDPLAADGLVNR-GNTYKE--I---GRVTDAIQDYIRA  398 (887)
Q Consensus       331 ~~~~~~~~-----~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-~~~~~~--~---g~~~~A~~~~~~a  398 (887)
                         +++..     ...+.+-..+ ..+-..++|.+-+...-..-   ..-+..+ +.+...  .   ....+|++.|+.+
T Consensus       336 ---n~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l---~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~  409 (459)
T KOG4340|consen  336 ---NAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGML---TEKLRKLAIQVQEARHNRDDEAIRKAVNEYDET  409 (459)
T ss_pred             ---CcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence               22211     1112222222 22345555555444332210   0000000 111111  1   1123444555555


Q ss_pred             HhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCh
Q 002729          399 ITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFP  440 (887)
Q Consensus       399 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  440 (887)
                      +++.   ..+....+++|+...++..+.+.|++..+...++.
T Consensus       410 LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ehd  448 (459)
T KOG4340|consen  410 LEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDHD  448 (459)
T ss_pred             HHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhhhcccc
Confidence            5443   23556677777888888888888877776655443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.59  E-value=5.3e-12  Score=138.46  Aligned_cols=299  Identities=18%  Similarity=0.180  Sum_probs=159.3

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002729           33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM  112 (887)
Q Consensus        33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  112 (887)
                      .+.+.....++...|++++|++.+++..+.-.+........|.++.++|++++|...|...++.+|++...+..+..+..
T Consensus         4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g   83 (517)
T PF12569_consen    4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG   83 (517)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence            34555555566666666666666665555555555555666666666666666666666666666666555555555542


Q ss_pred             HcC-----ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHH
Q 002729          113 RKG-----RLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNR  187 (887)
Q Consensus       113 ~~g-----~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  187 (887)
                      ...     +.+.-..+|++.....|....... +...+..-..+..                                 .
T Consensus        84 ~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~r-l~L~~~~g~~F~~---------------------------------~  129 (517)
T PF12569_consen   84 LQLQLSDEDVEKLLELYDELAEKYPRSDAPRR-LPLDFLEGDEFKE---------------------------------R  129 (517)
T ss_pred             hhcccccccHHHHHHHHHHHHHhCccccchhH-hhcccCCHHHHHH---------------------------------H
Confidence            222     234444444444444443221111 1111111011111                                 1


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh----------------hCCC--hhHHhhHHHHHHHc
Q 002729          188 ALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ----------------TRPN--AIAFGNLASTYYER  249 (887)
Q Consensus       188 A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------~~p~--~~~~~~la~~~~~~  249 (887)
                      +..++...+..  .-|.+...+-.+|....+..-...++.....                ..|.  ..+++.++..|...
T Consensus       130 ~~~yl~~~l~K--gvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~  207 (517)
T PF12569_consen  130 LDEYLRPQLRK--GVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYL  207 (517)
T ss_pred             HHHHHHHHHhc--CCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHh
Confidence            12222222221  2233333333333322222212222222111                1122  23456667777777


Q ss_pred             CChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHH
Q 002729          250 GQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKA  329 (887)
Q Consensus       250 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  329 (887)
                      |++++|+++++++++..|..++.|...|.++...|++.+|.+.++.+.+++..|-.+....+..+.+.|+.++|.+.+..
T Consensus       208 g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~  287 (517)
T PF12569_consen  208 GDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASL  287 (517)
T ss_pred             CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777777666


Q ss_pred             HHhccCCCc-------hhH--hhHHHHHHHcCCHHHHHHHHHHHHhc
Q 002729          330 TLAVTTGLS-------APF--NNLAVIYKQQGNYADAISCYNEVLRI  367 (887)
Q Consensus       330 ~~~~~~~~~-------~~~--~~la~~~~~~g~~~~A~~~~~~al~~  367 (887)
                      ....+.+..       -.|  ...|.+|.+.|++..|++.|..+.+.
T Consensus       288 Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~  334 (517)
T PF12569_consen  288 FTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH  334 (517)
T ss_pred             hcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            554432110       112  23466667777777777766666554

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.58  E-value=1.5e-11  Score=123.54  Aligned_cols=292  Identities=15%  Similarity=0.085  Sum_probs=197.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCh
Q 002729           39 LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPN-FADAWSNLASAYMRKGRL  117 (887)
Q Consensus        39 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~  117 (887)
                      -|..-+..|+|.+|.+...+.-+..+....++..-+.+..+.|+++.|-.++.++-+..++ ........+......|++
T Consensus        90 egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~  169 (400)
T COG3071          90 EGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDY  169 (400)
T ss_pred             HHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCc
Confidence            3444455566666666666665555555555556666666666666666666666665332 234555666666666666


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC---ChH-----HHHHHHHHHHHHcCCHHHHH
Q 002729          118 NEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP---TFA-----IAWSNLAGLFMESGDLNRAL  189 (887)
Q Consensus       118 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~-----~~~~~la~~~~~~g~~~~A~  189 (887)
                      +.|.....++++..|.++.+......+|...|++.+...++.++.+..-   ...     .++..+-+-....+..+.-.
T Consensus       170 ~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~  249 (400)
T COG3071         170 PAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLK  249 (400)
T ss_pred             hhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence            6666666666666666666666666666666666666666665554321   111     12222222222223333333


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCc
Q 002729          190 QYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRF  269 (887)
Q Consensus       190 ~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~  269 (887)
                      ..++..-..-..++.+...++.-+..+|+.++|.+..+++++..-+.....  -.-....++...-++..++.++..|++
T Consensus       250 ~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~--~~~~l~~~d~~~l~k~~e~~l~~h~~~  327 (400)
T COG3071         250 TWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR--LIPRLRPGDPEPLIKAAEKWLKQHPED  327 (400)
T ss_pred             HHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH--HHhhcCCCCchHHHHHHHHHHHhCCCC
Confidence            455555445556678888888888999999999999999988766655221  122345678888888899999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhc
Q 002729          270 LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAV  333 (887)
Q Consensus       270 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  333 (887)
                      +..+..+|..+.+.+.+.+|.++|+.+++..|+ ...+..++.++.+.|+..+|.+.+++++..
T Consensus       328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         328 PLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL  390 (400)
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            999999999999999999999999998887665 566788899999999999999999988754

>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases

Probab=99.58  E-value=1e-13  Score=152.27  Aligned_cols=322  Identities=13%  Similarity=0.072  Sum_probs=197.4

Q ss_pred             eeeeecCCCCCCh--hHHhhhHHhhcCCCCCcEEEEEecCCCCChHHHHHHH-------hh---cCceEECCCCCHHHHH
Q 002729          538 RVGYVSSDFGNHP--LSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQ-------SE---AEHFVDVSAMSSDMIA  605 (887)
Q Consensus       538 riGyvs~d~~~h~--~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~-------~~---~~~~~~~~~~~~~~~~  605 (887)
                      ||-+|++.|....  ....+..+.+.+.+.+++|++++..............       ..   ...+............
T Consensus         1 kIl~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (375)
T cd03821           1 KILHVIPSFDPKYGGPVRVVLNLSKALAKLGHEVTVATTDAGGDPLLVALNGVPVKLFSINVAYGLNLARYLFPPSLLAW   80 (375)
T ss_pred             CeEEEcCCCCcccCCeehHHHHHHHHHHhcCCcEEEEecCCCCccchhhccCceeeecccchhhhhhhhhhccChhHHHH
Confidence            5777787774211  1245556666777778899888765443221111000       00   0000000111123344


Q ss_pred             HHHHhCCCeEEEecCCcCCCCch--hhhhcCCCceEEeccccCCCCC-----C--------------CcccEEEecCccC
Q 002729          606 KLINEDKIQILINLNGYTKGARN--EIFAMQPAPIQVSYMGFPGTTG-----A--------------SYIDYLVTDEFVS  664 (887)
Q Consensus       606 ~~i~~~~~dil~~~~~~~~~~~~--~~~~~r~apvq~~~~g~~~t~g-----~--------------~~~d~~~~d~~~~  664 (887)
                      ......++||++-.+..+.....  .+....-.|+.++.-|......     .              ...|.+++.....
T Consensus        81 ~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~  160 (375)
T cd03821          81 LRLNIREADIVHVHGLWSYPSLAAARAARKYGIPYVVSPHGMLDPWALPHKALKKRLAWFLFERRLLQAAAAVHATSEQE  160 (375)
T ss_pred             HHHhCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEccccccccccccchhhhHHHHHHHHHHHHhcCCEEEECCHHH
Confidence            45566789998643322111111  1111234677666544322211     1              1123333221000


Q ss_pred             C-CCcCCCCccceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcC
Q 002729          665 P-LRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVP  741 (887)
Q Consensus       665 p-~~~~~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p  741 (887)
                      - ......+.+++..+|++.....+..       ......|..++.+.+.+++++++++  .|..+.++++|.++.++.|
T Consensus       161 ~~~~~~~~~~~~~~vi~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~  233 (375)
T cd03821         161 AAEIRRLGLKAPIAVIPNGVDIPPFAA-------LPSRGRRRKFPILPDKRIILFLGRLHPKKGLDLLIEAFAKLAERFP  233 (375)
T ss_pred             HHHHHhhCCcccEEEcCCCcChhccCc-------chhhhhhhhccCCCCCcEEEEEeCcchhcCHHHHHHHHHHhhhhcC
Confidence            0 0012234567777887644322211       0001125667777788888888876  5999999999999998899


Q ss_pred             CceEEEecCChhh-HHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeec
Q 002729          742 NSALWLLRFPAAG-EMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLP  819 (887)
Q Consensus       742 ~~~l~~~~~~~~~-~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~  819 (887)
                      +.+|+++|.++.. ...+...+...|+ .++|.|.|.++.++....|..+|+++-|..++| |++.+|||++|+|||+..
T Consensus       234 ~~~l~i~G~~~~~~~~~~~~~~~~~~~-~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~  312 (375)
T cd03821         234 DWHLVIAGPDEGGYRAELKQIAAALGL-EDRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTD  312 (375)
T ss_pred             CeEEEEECCCCcchHHHHHHHHHhcCc-cceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcC
Confidence            9999999975443 3344555588898 589999999999999999999999999977666 999999999999999987


Q ss_pred             ccchhhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 002729          820 LEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVR  874 (887)
Q Consensus       820 g~~~~~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~~  874 (887)
                      ...+.+-+..      + .+.++..+.+++++...++..|++.++.++++.++..
T Consensus       313 ~~~~~~~~~~------~-~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~  360 (375)
T cd03821         313 KVPWQELIEY------G-CGWVVDDDVDALAAALRRALELPQRLKAMGENGRALV  360 (375)
T ss_pred             CCCHHHHhhc------C-ceEEeCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            7666654432      2 2214556679999999999999999999998887764

Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.58  E-value=2.3e-11  Score=122.23  Aligned_cols=294  Identities=15%  Similarity=0.067  Sum_probs=233.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Q 002729           70 YGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNP-LLVDAHSNLGNLMKAQ  148 (887)
Q Consensus        70 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~  148 (887)
                      ...-|..-...|+|.+|.+...+.-+..+.....+..-+.+..+.|+.+.|-.++.++-+..+ +........+.++...
T Consensus        87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~  166 (400)
T COG3071          87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR  166 (400)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence            344455567789999999999998888888777888888999999999999999999988843 3456788899999999


Q ss_pred             CChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH--------HHHHHHHHHHHcCChH
Q 002729          149 GLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD--------AYLNLGNVYKALGMPQ  220 (887)
Q Consensus       149 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~--------~~~~l~~~~~~~g~~~  220 (887)
                      |+++.|.....++++..|.++.+......+|...|++.+...++.++-+..--+.+        ++..+.+-....+..+
T Consensus       167 ~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~  246 (400)
T COG3071         167 RDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSE  246 (400)
T ss_pred             CCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccch
Confidence            99999999999999999999999999999999999999999999998875433221        2222222222222222


Q ss_pred             HHHHHHHHHHhhCC-ChhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002729          221 EAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL  299 (887)
Q Consensus       221 ~A~~~~~~~~~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  299 (887)
                      .-...++.....-. ++.....++.-+.+.|+.++|.+..+++++..-+.. ..  .-.-...-++...=++..++.++.
T Consensus       247 gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~--~~~~~l~~~d~~~l~k~~e~~l~~  323 (400)
T COG3071         247 GLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LC--RLIPRLRPGDPEPLIKAAEKWLKQ  323 (400)
T ss_pred             HHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HH--HHHhhcCCCCchHHHHHHHHHHHh
Confidence            22224443333222 267777888999999999999999999997654433 11  122234668889999999999999


Q ss_pred             CCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhc
Q 002729          300 QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI  367 (887)
Q Consensus       300 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  367 (887)
                      .|+++..+..+|.++.+.+.|.+|..+|+.+++..|+ ...+..+|.++.+.|+..+|.+.+++++..
T Consensus       324 h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         324 HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL  390 (400)
T ss_pred             CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999988765 456889999999999999999999999854

>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known

Probab=99.58  E-value=3.8e-14  Score=155.31  Aligned_cols=320  Identities=13%  Similarity=0.153  Sum_probs=209.3

Q ss_pred             eeeeecCCCCCC--hhHHhhhHHhhcCCCCCcEEEEEecCCCCChHHHHHHHhhcCc---eEE-----CCCCCHHHHHHH
Q 002729          538 RVGYVSSDFGNH--PLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEH---FVD-----VSAMSSDMIAKL  607 (887)
Q Consensus       538 riGyvs~d~~~h--~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----~~~~~~~~~~~~  607 (887)
                      ||.+++..+..+  -....+..+.+.+.+.+++|.++....................   +..     ........+...
T Consensus         1 kI~ii~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (374)
T cd03801           1 KILLVTPEYPPSVGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEVGGIVVVRPPPLLRVRRLLLLLLLALRLRRL   80 (374)
T ss_pred             CeeEEecccCCccCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeeecCcceecCCcccccchhHHHHHHHHHHHHH
Confidence            577888777655  2335777788888877899998887654432211100000000   000     001123556778


Q ss_pred             HHhCCCeEEEecCCcCCCCchhhhhcCCCceEEeccccCCCCC------------------CCcccEEEecCccCCCCcC
Q 002729          608 INEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTG------------------ASYIDYLVTDEFVSPLRYA  669 (887)
Q Consensus       608 i~~~~~dil~~~~~~~~~~~~~~~~~r~apvq~~~~g~~~t~g------------------~~~~d~~~~d~~~~p~~~~  669 (887)
                      +...++||++-...+...........+..|+.++..+......                  +...|.+++-.-..-....
T Consensus        81 ~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~  160 (374)
T cd03801          81 LRRERFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGRPGNELGLLLKLARALERRALRRADRIIAVSEATREELR  160 (374)
T ss_pred             hhhcCCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhhccccchhHHHHHHHHHHHHHHHhCCEEEEecHHHHHHHH
Confidence            8889999998777776544332333455777766554433221                  1234555542211111122


Q ss_pred             CCCc---cceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCce
Q 002729          670 HIYS---EKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSA  744 (887)
Q Consensus       670 ~~~~---e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~  744 (887)
                      ..+.   .++..+|+......+.        +.....+...+.+.+.++++.+++.  .|..+.++++|..+....|+.+
T Consensus       161 ~~~~~~~~~~~~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~  232 (374)
T cd03801         161 ELGGVPPEKITVIPNGVDTERFR--------PAPRAARRRLGIPEDEPVILFVGRLVPRKGVDLLLEALAKLRKEYPDVR  232 (374)
T ss_pred             hcCCCCCCcEEEecCcccccccC--------ccchHHHhhcCCcCCCeEEEEecchhhhcCHHHHHHHHHHHhhhcCCeE
Confidence            2222   4677777654322111        0001112333445566777777765  6999999999999999889999


Q ss_pred             EEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccch
Q 002729          745 LWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKM  823 (887)
Q Consensus       745 l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~  823 (887)
                      |++.|.++. ...+.+.+...+. .++|.|.|.++.++....+..+|+++.|..++| |++.+|||++|+|||+.....+
T Consensus       233 l~i~G~~~~-~~~~~~~~~~~~~-~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~~~~  310 (374)
T cd03801         233 LVIVGDGPL-REELEALAAELGL-GDRVTFLGFVPDEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGLPVVASDVGGI  310 (374)
T ss_pred             EEEEeCcHH-HHHHHHHHHHhCC-CcceEEEeccChhhHHHHHHhcCEEEecchhccccchHHHHHHcCCcEEEeCCCCh
Confidence            999996655 6677777778888 689999999999999999999999999977666 9999999999999999887766


Q ss_pred             hhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 002729          824 ATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVR  874 (887)
Q Consensus       824 ~~r~~~~~l~~~g~~~~~~~--~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~~  874 (887)
                      .+.+..      |-.+ ++.  .|.+++++...++..|++.+.++++..++..
T Consensus       311 ~~~~~~------~~~g-~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~  356 (374)
T cd03801         311 PEVVED------GETG-LLVPPGDPEALAEAILRLLDDPELRRRLGEAARERV  356 (374)
T ss_pred             hHHhcC------Ccce-EEeCCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHH
Confidence            664432      3334 444  3469999999999999999999998887443

Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.

>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases

Probab=99.58  E-value=1.3e-13  Score=149.67  Aligned_cols=305  Identities=14%  Similarity=0.166  Sum_probs=192.3

Q ss_pred             eeeeecCCCCC-ChhHHhhhHHhhcCCCCCcEEEEEecCCCCChHHHHHHHhhcCceEEC----------CCCCHHHHHH
Q 002729          538 RVGYVSSDFGN-HPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDV----------SAMSSDMIAK  606 (887)
Q Consensus       538 riGyvs~d~~~-h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~  606 (887)
                      ||.++++.+.. .=+...+..+.+.+.+.+++|.+++..+..... .. +...+ .+..+          .......+.+
T Consensus         1 kI~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~-~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   77 (348)
T cd03820           1 KILFVIPSLGNAGGAERVLSNLANALAEKGHEVTIISLDKGEPPF-YE-LDPKI-KVIDLGDKRDSKLLARFKKLRRLRK   77 (348)
T ss_pred             CeEEEeccccCCCChHHHHHHHHHHHHhCCCeEEEEecCCCCCCc-cc-cCCcc-ceeecccccccchhccccchHHHHH
Confidence            68888888863 223356666777777678899888766543110 00 11111 11111          2223577899


Q ss_pred             HHHhCCCeEEEecCCcCCCCchhhhhcCCCceEEeccccCCCCC------------CCcccEEEecCccCCCCcCCCCcc
Q 002729          607 LINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTG------------ASYIDYLVTDEFVSPLRYAHIYSE  674 (887)
Q Consensus       607 ~i~~~~~dil~~~~~~~~~~~~~~~~~r~apvq~~~~g~~~t~g------------~~~~d~~~~d~~~~p~~~~~~~~e  674 (887)
                      .|+..++|+++-..++ ...-+..+..+..|+.+..-+.+....            +...|.+++..-..-.........
T Consensus        78 ~l~~~~~d~i~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~  156 (348)
T cd03820          78 LLKNNKPDVVISFLTS-LLTFLASLGLKIVKLIVSEHNSPDAYKKRLRRLLLRRLLYRRADAVVVLTEEDRALYYKKFNK  156 (348)
T ss_pred             hhcccCCCEEEEcCch-HHHHHHHHhhccccEEEecCCCccchhhhhHHHHHHHHHHhcCCEEEEeCHHHHHHhhccCCC
Confidence            9999999999876655 111112222222255444333222221            334566555221110112233445


Q ss_pred             ceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCC--CCCCCHHHHHHHHHHHhhcCCceEEEecCCh
Q 002729          675 KLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQ--LYKMDPEIFNTWCNILRRVPNSALWLLRFPA  752 (887)
Q Consensus       675 ~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~--~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~  752 (887)
                      ++..+|++.......        +    .     .+.+.++++++++  ..|..+.++++|.++.+..|+.+|+++|.++
T Consensus       157 ~~~vi~~~~~~~~~~--------~----~-----~~~~~~~i~~~g~~~~~K~~~~l~~~~~~l~~~~~~~~l~i~G~~~  219 (348)
T cd03820         157 NVVVIPNPLPFPPEE--------P----S-----SDLKSKRILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRIVGDGP  219 (348)
T ss_pred             CeEEecCCcChhhcc--------c----c-----CCCCCcEEEEEEeeccccCHHHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence            666676643221100        0    0     1233445555554  4689999999999999889999999999776


Q ss_pred             hhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHHH
Q 002729          753 AGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSL  831 (887)
Q Consensus       753 ~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~  831 (887)
                      . ...+.+.....|+ .++|.|.|.  .++....|..+|+++-|..+.| |++++|||++|+|||+.........     
T Consensus       220 ~-~~~~~~~~~~~~~-~~~v~~~g~--~~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~-----  290 (348)
T cd03820         220 E-REALEALIKELGL-EDRVILLGF--TKNIEEYYAKASIFVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPSE-----  290 (348)
T ss_pred             C-HHHHHHHHHHcCC-CCeEEEcCC--cchHHHHHHhCCEEEeCccccccCHHHHHHHHcCCCEEEecCCCchHh-----
Confidence            5 6677778888898 688999997  5778888999999999977777 9999999999999998654332221     


Q ss_pred             HHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 002729          832 CLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSV  873 (887)
Q Consensus       832 l~~~g~~~~~~~--~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~  873 (887)
                      +..-|..+ ++.  .|.+++++...++..|++.++++++..+..
T Consensus       291 ~~~~~~~g-~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~  333 (348)
T cd03820         291 IIEDGVNG-LLVPNGDVEALAEALLRLMEDEELRKRMGANARES  333 (348)
T ss_pred             hhccCcce-EEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence            11113344 454  467999999999999999999999887554

AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.

>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases

Probab=99.58  E-value=3.8e-14  Score=155.73  Aligned_cols=322  Identities=15%  Similarity=0.163  Sum_probs=198.7

Q ss_pred             eeeeecCCCCCChh--HHhhhHHhhcCCCCCcEEEEEecCCCCChHHHHHHHhhcCc-----eE--ECCCCCHHHHHHHH
Q 002729          538 RVGYVSSDFGNHPL--SHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEH-----FV--DVSAMSSDMIAKLI  608 (887)
Q Consensus       538 riGyvs~d~~~h~~--~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~i  608 (887)
                      ||.+++..|..+..  +.....+.+.+.+.+.+|++++...................     +.  .........+.+.+
T Consensus         1 kil~~~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (374)
T cd03817           1 KIGIFTDTYLPQVNGVATSIRRLAEELEKRGHEVYVVAPSYPGAPEEEEVVVVRPFRVPTFKYPDFRLPLPIPRALIIIL   80 (374)
T ss_pred             CeeEeehhccCCCCCeehHHHHHHHHHHHcCCeEEEEeCCCCCCCcccccccccccccccchhhhhhccccHHHHHHHHH
Confidence            57777777644332  24556666776666788888876543221101000000000     00  00011134455568


Q ss_pred             HhCCCeEEEecCCcCCCCchh-hhhcCCCceEEeccccCC----------------------CCCCCcccEEEecCccCC
Q 002729          609 NEDKIQILINLNGYTKGARNE-IFAMQPAPIQVSYMGFPG----------------------TTGASYIDYLVTDEFVSP  665 (887)
Q Consensus       609 ~~~~~dil~~~~~~~~~~~~~-~~~~r~apvq~~~~g~~~----------------------t~g~~~~d~~~~d~~~~p  665 (887)
                      ...++||++-.+..+.+.... +......|+..++-..+.                      ...+...|++++..-...
T Consensus        81 ~~~~~Div~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~~~~  160 (374)
T cd03817          81 KELGPDIVHTHTPFSLGLLGLRVARKLGIPVVATYHTMYEDYTHYVPLGRLLARAVVRRKLSRRFYNRCDAVIAPSEKIA  160 (374)
T ss_pred             hhcCCCEEEECCchhhhhHHHHHHHHcCCCEEEEecCCHHHHHHHHhcccchhHHHHHHHHHHHHhhhCCEEEeccHHHH
Confidence            899999997655433322111 222345676654321110                      001123455444111000


Q ss_pred             CCcCC-CCccceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCC
Q 002729          666 LRYAH-IYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPN  742 (887)
Q Consensus       666 ~~~~~-~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~  742 (887)
                      ..... ....++..+|++.-.....       +......|..++++++.++++++++.  .|..+.++++|.++....|+
T Consensus       161 ~~~~~~~~~~~~~vi~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~  233 (374)
T cd03817         161 DLLREYGVKRPIEVIPTGIDLDRFE-------PVDGDDERRKLGIPEDEPVLLYVGRLAKEKNIDFLIRAFARLLKEEPD  233 (374)
T ss_pred             HHHHhcCCCCceEEcCCccchhccC-------ccchhHHHHhcCCCCCCeEEEEEeeeecccCHHHHHHHHHHHHHhCCC
Confidence            00011 1234466677654321111       01111224556677777777777765  58899999999999888899


Q ss_pred             ceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeeccc
Q 002729          743 SALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLE  821 (887)
Q Consensus       743 ~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~  821 (887)
                      .++.+.|.++. ...+++.+...++ .++|.|.|.++.++....|+.+|+++.|....| |++++|||+||+|||+....
T Consensus       234 ~~l~i~G~~~~-~~~~~~~~~~~~~-~~~v~~~g~~~~~~~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~~  311 (374)
T cd03817         234 VKLVIVGDGPE-REELEELARELGL-ADRVIFTGFVPREELPDYYKAADLFVFASTTETQGLVLLEAMAAGLPVVAVDAP  311 (374)
T ss_pred             eEEEEEeCCch-HHHHHHHHHHcCC-CCcEEEeccCChHHHHHHHHHcCEEEecccccCcChHHHHHHHcCCcEEEeCCC
Confidence            99999998765 6678888888898 589999999999999999999999999966555 99999999999999998776


Q ss_pred             chhhhhHHHHHHhcCCCCccccC-CHHHHHHHHHHHhcCHHHHHHHHHHHHhhcc
Q 002729          822 KMATRVAGSLCLATGLGEEMIVN-SMKEYEERAVSLALDRQKLQALTNKLKSVRL  875 (887)
Q Consensus       822 ~~~~r~~~~~l~~~g~~~~~~~~-~~~~y~~~a~~l~~d~~~~~~~~~~~~~~~~  875 (887)
                      .+.+.+..      |-.+ +++. +.+++++...++.+|++.++.+++..++...
T Consensus       312 ~~~~~i~~------~~~g-~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~  359 (374)
T cd03817         312 GLPDLVAD------GENG-FLFPPGDEALAEALLRLLQDPELRRRLSKNAEESAE  359 (374)
T ss_pred             Chhhheec------Ccee-EEeCCCCHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence            66553321      3445 5553 3339999999999999999999888876543

UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.

>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated

Probab=99.58  E-value=1.1e-13  Score=151.87  Aligned_cols=310  Identities=14%  Similarity=0.137  Sum_probs=193.2

Q ss_pred             ceeeeecCCCCCChhHHhhhHHhhcCCCCCcEEEEEecCCCCChHHHHHHHhhcCceEECCC--C----CHHHHHHHHHh
Q 002729          537 LRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSA--M----SSDMIAKLINE  610 (887)
Q Consensus       537 lriGyvs~d~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~i~~  610 (887)
                      .+|-++.+.|..-=+-.++..+...++..++++++++....+  .+...+...--.++.+..  .    ....+.+.++.
T Consensus         2 ~~il~ii~~~~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~   79 (374)
T TIGR03088         2 PLIVHVVYRFDVGGLENGLVNLINHLPADRYRHAVVALTEVS--AFRKRIQRPDVAFYALHKQPGKDVAVYPQLYRLLRQ   79 (374)
T ss_pred             ceEEEEeCCCCCCcHHHHHHHHHhhccccccceEEEEcCCCC--hhHHHHHhcCceEEEeCCCCCCChHHHHHHHHHHHH
Confidence            467777777743222367778888888888887666543222  334444333223333321  1    13557888999


Q ss_pred             CCCeEEEecCCcCCCCch---hhhhc-CCCceEE-eccccCCCC----CC----------CcccEEEecCccCCCCc-C-
Q 002729          611 DKIQILINLNGYTKGARN---EIFAM-QPAPIQV-SYMGFPGTT----GA----------SYIDYLVTDEFVSPLRY-A-  669 (887)
Q Consensus       611 ~~~dil~~~~~~~~~~~~---~~~~~-r~apvq~-~~~g~~~t~----g~----------~~~d~~~~d~~~~p~~~-~-  669 (887)
                      .++||++     +++...   .+++. ..-|+-+ +..|++...    +.          +..|.+++     .+.. . 
T Consensus        80 ~~~Divh-----~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----vs~~~~~  149 (374)
T TIGR03088        80 LRPDIVH-----TRNLAALEAQLPAALAGVPARIHGEHGRDVFDLDGSNWKYRWLRRLYRPLIHHYVA-----VSRDLED  149 (374)
T ss_pred             hCCCEEE-----EcchhHHHHHHHHHhcCCCeEEEeecCcccccchhhHHHHHHHHHHHHhcCCeEEE-----eCHHHHH
Confidence            9999994     432111   11221 1223322 111211100    00          12333332     2221 1 


Q ss_pred             ------CCCccceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcC
Q 002729          670 ------HIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVP  741 (887)
Q Consensus       670 ------~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p  741 (887)
                            ....+++..+|++.....+...     .......+.....+++.+++++++++  .|..+.+++++.+++++.|
T Consensus       150 ~~~~~~~~~~~~~~vi~ngvd~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~  224 (374)
T TIGR03088       150 WLRGPVKVPPAKIHQIYNGVDTERFHPS-----RGDRSPILPPDFFADESVVVGTVGRLQAVKDQPTLVRAFALLVRQLP  224 (374)
T ss_pred             HHHHhcCCChhhEEEeccCccccccCCC-----ccchhhhhHhhcCCCCCeEEEEEecCCcccCHHHHHHHHHHHHHhCc
Confidence                  1123456667765432111100     00011112233346677888888877  4899999999999998876


Q ss_pred             ----CceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCcee
Q 002729          742 ----NSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMI  816 (887)
Q Consensus       742 ----~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvv  816 (887)
                          +.+|+++|.++. .+.+++.+.+.|+ .++|.|.|.  ..+...+|+.+|+++-|+.++| |++++|||+||+|||
T Consensus       225 ~~~~~~~l~i~G~g~~-~~~~~~~~~~~~~-~~~v~~~g~--~~~~~~~~~~adi~v~pS~~Eg~~~~~lEAma~G~Pvv  300 (374)
T TIGR03088       225 EGAERLRLVIVGDGPA-RGACEQMVRAAGL-AHLVWLPGE--RDDVPALMQALDLFVLPSLAEGISNTILEAMASGLPVI  300 (374)
T ss_pred             ccccceEEEEecCCch-HHHHHHHHHHcCC-cceEEEcCC--cCCHHHHHHhcCEEEeccccccCchHHHHHHHcCCCEE
Confidence                679999998765 6788999999999 588999995  4567888999999999977777 999999999999999


Q ss_pred             eecccchhhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 002729          817 TLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVR  874 (887)
Q Consensus       817 t~~g~~~~~r~~~~~l~~~g~~~~~~~--~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~~  874 (887)
                      +-......+-+.      -|..+ ++.  .|.+++++....+..|++.+..++.+.|+..
T Consensus       301 ~s~~~g~~e~i~------~~~~g-~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~  353 (374)
T TIGR03088       301 ATAVGGNPELVQ------HGVTG-ALVPPGDAVALARALQPYVSDPAARRAHGAAGRARA  353 (374)
T ss_pred             EcCCCCcHHHhc------CCCce-EEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            865444444221      14445 444  6899999999999999999999988877654

Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.

>PLN02949 transferase, transferring glycosyl groups

Probab=99.58  E-value=3.4e-14  Score=156.29  Aligned_cols=165  Identities=13%  Similarity=0.089  Sum_probs=126.8

Q ss_pred             EEEEecCC--CCCCCHHHHHHHHHHHhh----cCCceEEEecCChh-----hHHHHHHHHHHcCCCCCcEEEcCCCCcHH
Q 002729          714 FIFACFNQ--LYKMDPEIFNTWCNILRR----VPNSALWLLRFPAA-----GEMRLRAYAVAQGVQPDQIIFTDVAMKQE  782 (887)
Q Consensus       714 ~~~~~~~~--~~k~~~~~~~~~~~il~~----~p~~~l~~~~~~~~-----~~~~l~~~~~~~g~~~~r~~~~~~~~~~~  782 (887)
                      .+|.++++  +.|.++.++++|++++++    .|+.+|+|+|+++.     ..+.|++.+++.|+ .++|.|.|..+.++
T Consensus       269 ~~il~vGR~~~~Kg~~llI~A~~~l~~~~~~~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L-~~~V~f~g~v~~~e  347 (463)
T PLN02949        269 PYIISVAQFRPEKAHALQLEAFALALEKLDADVPRPKLQFVGSCRNKEDEERLQKLKDRAKELGL-DGDVEFHKNVSYRD  347 (463)
T ss_pred             CEEEEEEeeeccCCHHHHHHHHHHHHHhccccCCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCC-CCcEEEeCCCCHHH
Confidence            44555665  469999999999998764    47889999997532     12578899999999 68999999999999


Q ss_pred             HHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccc-hhhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhc-C
Q 002729          783 HIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEK-MATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLAL-D  859 (887)
Q Consensus       783 ~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~-~~~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l~~-d  859 (887)
                      ...+|+.+|+++.|.-++| |++.+|||++|+|||+..... ..+-+...   .-|.++ +.+.|.+++.+...++.+ |
T Consensus       348 l~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~eIV~~~---~~g~tG-~l~~~~~~la~ai~~ll~~~  423 (463)
T PLN02949        348 LVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKMDIVLDE---DGQQTG-FLATTVEEYADAILEVLRMR  423 (463)
T ss_pred             HHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcceeeecC---CCCccc-ccCCCHHHHHHHHHHHHhCC
Confidence            9999999999999976666 999999999999999865221 11111100   014556 778899999999999998 6


Q ss_pred             HHHHHHHHHHHHhhcccCCCCCcCCcc
Q 002729          860 RQKLQALTNKLKSVRLTCPLFDTARWV  886 (887)
Q Consensus       860 ~~~~~~~~~~~~~~~~~~~l~d~~~~~  886 (887)
                      ++.+++|+++.|++..   -|+..+|+
T Consensus       424 ~~~r~~m~~~ar~~~~---~FS~e~~~  447 (463)
T PLN02949        424 ETERLEIAAAARKRAN---RFSEQRFN  447 (463)
T ss_pred             HHHHHHHHHHHHHHHH---HcCHHHHH
Confidence            7888899998887642   26665553

>PLN02846 digalactosyldiacylglycerol synthase

Probab=99.57  E-value=3.1e-14  Score=153.64  Aligned_cols=302  Identities=9%  Similarity=-0.037  Sum_probs=180.1

Q ss_pred             ccceeeeecCCCCCChhH--HhhhHHhhcCCCCC-cEEEEEecCCCC-------------------ChHHHHHHHhhcCc
Q 002729          535 RRLRVGYVSSDFGNHPLS--HLMGSVFGMHNKEN-VEVFCYALSPND-------------------GTEWRQRTQSEAEH  592 (887)
Q Consensus       535 ~~lriGyvs~d~~~h~~~--~~~~~~~~~~~~~~-~e~~~~~~~~~~-------------------~~~~~~~~~~~~~~  592 (887)
                      .++||++++.-|--..-|  .....+...+-+.+ .||+++......                   +...++.....+.+
T Consensus         3 ~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~heV~vvaP~~~~~~~~~~~~~~~~f~~~~~~e~~~~~~~~~~v~r   82 (462)
T PLN02846          3 KKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGDREVTLVIPWLSLKDQKLVYPNKITFSSPSEQEAYVRQWLEERISF   82 (462)
T ss_pred             CCCEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCCcEEEEEecCCccccccccccccccccCchhhhhhhhhhccCeEEE
Confidence            468999999877444322  23333444555666 589888764211                   01111111111111


Q ss_pred             e--------EE------CCCCCHHHHHHHHHhCCCeEEEecCCcCCCCc--hhhhhcCCCceEEeccccC-CC---CCC-
Q 002729          593 F--------VD------VSAMSSDMIAKLINEDKIQILINLNGYTKGAR--NEIFAMQPAPIQVSYMGFP-GT---TGA-  651 (887)
Q Consensus       593 ~--------~~------~~~~~~~~~~~~i~~~~~dil~~~~~~~~~~~--~~~~~~r~apvq~~~~g~~-~t---~g~-  651 (887)
                      +        ..      ...+...++.+.|++.++||++--+-.+-|.-  ..-.+.|.-++..++-..+ ..   .+. 
T Consensus        83 ~~s~~~p~yp~r~~~~~r~~~~~~~i~~~l~~~~pDVIHv~tP~~LG~~~~g~~~~~k~~~vV~tyHT~y~~Y~~~~~~g  162 (462)
T PLN02846         83 LPKFSIKFYPGKFSTDKRSILPVGDISETIPDEEADIAVLEEPEHLTWYHHGKRWKTKFRLVIGIVHTNYLEYVKREKNG  162 (462)
T ss_pred             ecccccccCcccccccccccCChHHHHHHHHhcCCCEEEEcCchhhhhHHHHHHHHhcCCcEEEEECCChHHHHHHhccc
Confidence            1        11      11224567999999999999964332222221  1112333334333432211 11   110 


Q ss_pred             --Cc-----ccEE----EecCccCCCCcCCCCccceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcE--EEEe
Q 002729          652 --SY-----IDYL----VTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKF--IFAC  718 (887)
Q Consensus       652 --~~-----~d~~----~~d~~~~p~~~~~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~--~~~~  718 (887)
                        ..     +..+    -+|.++.|+.....+.+..+..+++...        ....+.....+..++ +++.+  ++++
T Consensus       163 ~~~~~l~~~~~~~~~r~~~d~vi~pS~~~~~l~~~~i~~v~GVd~--------~~f~~~~~~~~~~~~-~~~~~~~~~l~  233 (462)
T PLN02846        163 RVKAFLLKYINSWVVDIYCHKVIRLSAATQDYPRSIICNVHGVNP--------KFLEIGKLKLEQQKN-GEQAFTKGAYY  233 (462)
T ss_pred             hHHHHHHHHHHHHHHHHhcCEEEccCHHHHHHhhCEEecCceech--------hhcCCCcccHhhhcC-CCCCcceEEEE
Confidence              10     1111    2577777876544344555554432211        111111111222222 34433  4566


Q ss_pred             cCCC--CCCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecC
Q 002729          719 FNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDT  796 (887)
Q Consensus       719 ~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~  796 (887)
                      .+|+  .|+.+.+++++.++.+..|+.+|+|+|+||. ++.|++.+.+.|++ .++ |.|....++   .|+.+|||+-|
T Consensus       234 vGRL~~eK~~~~Li~a~~~l~~~~~~~~l~ivGdGp~-~~~L~~~a~~l~l~-~~v-f~G~~~~~~---~~~~~DvFv~p  307 (462)
T PLN02846        234 IGKMVWSKGYKELLKLLHKHQKELSGLEVDLYGSGED-SDEVKAAAEKLELD-VRV-YPGRDHADP---LFHDYKVFLNP  307 (462)
T ss_pred             EecCcccCCHHHHHHHHHHHHhhCCCeEEEEECCCcc-HHHHHHHHHhcCCc-EEE-ECCCCCHHH---HHHhCCEEEEC
Confidence            6776  5999999999999988899999999999988 88999999999984 444 888765554   55667999999


Q ss_pred             CCCCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcC
Q 002729          797 PLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALD  859 (887)
Q Consensus       797 ~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l~~d  859 (887)
                      +.+.| |++++|||+||+|||+...+. .     .++.. |-+. +..+|.+++++.+..+..+
T Consensus       308 S~~Et~g~v~lEAmA~G~PVVa~~~~~-~-----~~v~~-~~ng-~~~~~~~~~a~ai~~~l~~  363 (462)
T PLN02846        308 STTDVVCTTTAEALAMGKIVVCANHPS-N-----EFFKQ-FPNC-RTYDDGKGFVRATLKALAE  363 (462)
T ss_pred             CCcccchHHHHHHHHcCCcEEEecCCC-c-----ceeec-CCce-EecCCHHHHHHHHHHHHcc
Confidence            88888 999999999999999875442 1     23333 5555 6778999999999988774

>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases

Probab=99.56  E-value=1.2e-13  Score=150.28  Aligned_cols=315  Identities=13%  Similarity=0.096  Sum_probs=198.6

Q ss_pred             eeeeecCCCCCChhHHhhhHHhhcCCCCCcEEEEEecCCCCChHHHHH--H--HhhcC--ceEECCCCCHHHHHHHHHhC
Q 002729          538 RVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQR--T--QSEAE--HFVDVSAMSSDMIAKLINED  611 (887)
Q Consensus       538 riGyvs~d~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~--~--~~~~~--~~~~~~~~~~~~~~~~i~~~  611 (887)
                      ||.+++..+...-+...+..+.+.+...+++|.++...+.........  .  .....  ............+.+.++..
T Consensus         1 kIl~~~~~~~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (353)
T cd03811           1 KILFVIPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELLPSNVKLIPVRVLKLKSLRDLLAILRLRRLLRKE   80 (353)
T ss_pred             CeEEEeecccCCCcchhHHHHHHHHHhcCceEEEEEcCCCCccccccccchhhhceeeeecccccchhHHHHHHHHHHhc
Confidence            678888888644445677778888877789999888665433210100  0  00000  01111112356789999999


Q ss_pred             CCeEEEecCCcCCCCchhhhhcC-CCceEEeccccCCCCCC-------------CcccEEEecCccCCCCcCCCC---cc
Q 002729          612 KIQILINLNGYTKGARNEIFAMQ-PAPIQVSYMGFPGTTGA-------------SYIDYLVTDEFVSPLRYAHIY---SE  674 (887)
Q Consensus       612 ~~dil~~~~~~~~~~~~~~~~~r-~apvq~~~~g~~~t~g~-------------~~~d~~~~d~~~~p~~~~~~~---~e  674 (887)
                      ++||++-... ....-...+..+ -.|+.++.-+.+.....             ...|.+++-.-..-......+   .+
T Consensus        81 ~~dii~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~  159 (353)
T cd03811          81 KPDVVISHLT-TTPNVLALLAARLGTKLIVWEHNSLSLELKRKLRLLLLIRKLYRRADKIVAVSEGVKEDLLKLLGIPPD  159 (353)
T ss_pred             CCCEEEEcCc-cchhHHHHHHhhcCCceEEEEcCcchhhhccchhHHHHHHhhccccceEEEeccchhhhHHHhhcCCcc
Confidence            9999987665 222222222221 24665553333222111             334444441111111112222   36


Q ss_pred             ceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEecCCh
Q 002729          675 KLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPA  752 (887)
Q Consensus       675 ~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~~~  752 (887)
                      ++..+|++.......        +.... +..++.+.+.++|++++++  .|..+.++++|..+....|+.+|+++|.++
T Consensus       160 ~~~vi~~~~~~~~~~--------~~~~~-~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~l~~~~~~~~l~i~G~~~  230 (353)
T cd03811         160 KIEVIYNPIDIEEIR--------ALAEE-PLELGIPPDGPVILAVGRLSPQKGFDTLIRAFALLRKEGPDARLVILGDGP  230 (353)
T ss_pred             ccEEecCCcChhhcC--------cccch-hhhcCCCCCceEEEEEecchhhcChHHHHHHHHHhhhcCCCceEEEEcCCc
Confidence            667777654322111        10000 0024556677888888876  589999999999998888999999999776


Q ss_pred             hhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHHH
Q 002729          753 AGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSL  831 (887)
Q Consensus       753 ~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~  831 (887)
                      . ...+.+.....|+ .++|.|.|..+  +....+..+|+++.|..+.| |++++|||++|+|||+.......+.+..  
T Consensus       231 ~-~~~~~~~~~~~~~-~~~v~~~g~~~--~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~~~~e~i~~--  304 (353)
T cd03811         231 L-REELEALAKELGL-ADRVHFLGFQS--NPYPYLKAADLFVLSSRYEGFPNVLLEAMALGTPVVATDCPGPREILED--  304 (353)
T ss_pred             c-HHHHHHHHHhcCC-CccEEEecccC--CHHHHHHhCCEEEeCcccCCCCcHHHHHHHhCCCEEEcCCCChHHHhcC--
Confidence            5 6677788888998 58999999854  45678999999999987777 9999999999999998776655554332  


Q ss_pred             HHhcCCCCcccc--CCHHHH---HHHHHHHhcCHHHHHHHHHHHHhh
Q 002729          832 CLATGLGEEMIV--NSMKEY---EERAVSLALDRQKLQALTNKLKSV  873 (887)
Q Consensus       832 l~~~g~~~~~~~--~~~~~y---~~~a~~l~~d~~~~~~~~~~~~~~  873 (887)
                          |-.+ ++.  .+.+++   +.....+..|++.+.+++...++.
T Consensus       305 ----~~~g-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  346 (353)
T cd03811         305 ----GENG-LLVPVGDEAALAAAALALLDLLLDPELRERLAAAARER  346 (353)
T ss_pred             ----CCce-EEECCCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence                4445 554  456666   677888888999999888855544

WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.

>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds

Probab=99.55  E-value=1.3e-13  Score=151.07  Aligned_cols=251  Identities=15%  Similarity=0.159  Sum_probs=165.0

Q ss_pred             HHHHHHHHHhCCCeEEEecCCcCCCCchhhhhcCCCceEEeccccCCCCCCCccc--------------EEEecCccCCC
Q 002729          601 SDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYID--------------YLVTDEFVSPL  666 (887)
Q Consensus       601 ~~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~~r~apvq~~~~g~~~t~g~~~~d--------------~~~~d~~~~p~  666 (887)
                      ...+...+++.++||++.-.+.+...-..+......|+.+++-|+..+......-              +.-+|.++.+.
T Consensus        71 ~~~~~~~~~~~~~dvvh~~~~~~~~~~~~~~~~~~~p~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s  150 (367)
T cd05844          71 APQLRRLLRRHRPDLVHAHFGFDGVYALPLARRLGVPLVVTFHGFDATTSLALLLRSRWALYARRRRRLARRAALFIAVS  150 (367)
T ss_pred             ccHHHHHHHhhCCCEEEeccCchHHHHHHHHHHcCCCEEEEEeCccccccchhhcccchhHHHHHHHHHHHhcCEEEECC
Confidence            3455667899999999754433211111222234578888766543332211100              00123333333


Q ss_pred             CcC-------CCCccceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHHHHHHhh
Q 002729          667 RYA-------HIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILRR  739 (887)
Q Consensus       667 ~~~-------~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~il~~  739 (887)
                      ...       +...+++..+|++.....+        .+....      .....++|.+-....|..+.+++++..+.++
T Consensus       151 ~~~~~~~~~~~~~~~~i~vi~~g~d~~~~--------~~~~~~------~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~  216 (367)
T cd05844         151 QFIRDRLLALGFPPEKVHVHPIGVDTAKF--------TPATPA------RRPPRILFVGRFVEKKGPLLLLEAFARLARR  216 (367)
T ss_pred             HHHHHHHHHcCCCHHHeEEecCCCCHHhc--------CCCCCC------CCCcEEEEEEeeccccChHHHHHHHHHHHHh
Confidence            221       1224566666654321100        010000      1112344444445679999999999999999


Q ss_pred             cCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCC-------CCCchhHHHHHHhC
Q 002729          740 VPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPL-------CNAHTTGTDILWAG  812 (887)
Q Consensus       740 ~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~-------~~g~~t~~eal~~g  812 (887)
                      .|+.+|+++|.++. .+.+++.+.+.|+ .++|.|.|.++.++...+|..+|+++-|+.       .+.|++.+|||++|
T Consensus       217 ~~~~~l~ivG~g~~-~~~~~~~~~~~~~-~~~v~~~g~~~~~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G  294 (367)
T cd05844         217 VPEVRLVIIGDGPL-LAALEALARALGL-GGRVTFLGAQPHAEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASG  294 (367)
T ss_pred             CCCeEEEEEeCchH-HHHHHHHHHHcCC-CCeEEECCCCCHHHHHHHHHhCCEEEECcccCCCCCccCCchHHHHHHHcC
Confidence            99999999998765 5678888899998 589999999999999999999999999864       23499999999999


Q ss_pred             CceeeecccchhhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 002729          813 LPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVR  874 (887)
Q Consensus       813 vPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~--~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~~  874 (887)
                      +|||+-......+-+..      |-.+ ++.  .|.+++++...++..|++.+.+++.+.++..
T Consensus       295 ~PvI~s~~~~~~e~i~~------~~~g-~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~a~~~~  351 (367)
T cd05844         295 VPVVATRHGGIPEAVED------GETG-LLVPEGDVAALAAALGRLLADPDLRARMGAAGRRRV  351 (367)
T ss_pred             CCEEEeCCCCchhheec------CCee-EEECCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence            99998776655543321      3334 444  5899999999999999999999988877654

The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center

>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases

Probab=99.55  E-value=2e-13  Score=149.87  Aligned_cols=308  Identities=16%  Similarity=0.182  Sum_probs=192.1

Q ss_pred             ceeeeecC-CCCCChhHHhhhHHhhcCCCCCcEEEEEecCCCCChHHHHHHHhhcCceEECCC--------C---CHHHH
Q 002729          537 LRVGYVSS-DFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSA--------M---SSDMI  604 (887)
Q Consensus       537 lriGyvs~-d~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~---~~~~~  604 (887)
                      +||.+++. ..+.  +...+..+.+.+.+.++||.+++.......  .........+...+..        .   ....+
T Consensus         1 mki~~~~~p~~gG--~~~~~~~la~~L~~~G~~v~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   76 (371)
T cd04962           1 MKIGIVCYPTYGG--SGVVATELGKALARRGHEVHFITSSRPFRL--DEYSPNIFFHEVEVPQYPLFQYPPYDLALASKI   76 (371)
T ss_pred             CceeEEEEeCCCC--ccchHHHHHHHHHhcCCceEEEecCCCcch--hhhccCeEEEEecccccchhhcchhHHHHHHHH
Confidence            35666652 1111  124566667777777888888875432110  0000000000011110        0   12566


Q ss_pred             HHHHHhCCCeEEEecCCcCCCCchhhhhc-----CCCceEEeccccCCC-CC------------CCcccEEEecCccCCC
Q 002729          605 AKLINEDKIQILINLNGYTKGARNEIFAM-----QPAPIQVSYMGFPGT-TG------------ASYIDYLVTDEFVSPL  666 (887)
Q Consensus       605 ~~~i~~~~~dil~~~~~~~~~~~~~~~~~-----r~apvq~~~~g~~~t-~g------------~~~~d~~~~d~~~~p~  666 (887)
                      .+.|+..++||++-...... ....+++.     +..|+.++..|.... .+            +...|.+++     ..
T Consensus        77 ~~~i~~~~~divh~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~-----~s  150 (371)
T cd04962          77 AEVAKRYKLDLLHVHYAVPH-AVAAYLAREILGKKDLPVVTTLHGTDITLVGQDPSFQPATRFSIEKSDGVTA-----VS  150 (371)
T ss_pred             HHHHhcCCccEEeecccCCc-cHHHHHHHHhcCcCCCcEEEEEcCCccccccccccchHHHHHHHhhCCEEEE-----cC
Confidence            77888999999963221110 11122221     145776665443211 11            122344443     22


Q ss_pred             Cc-----CCC--CccceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHH
Q 002729          667 RY-----AHI--YSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNIL  737 (887)
Q Consensus       667 ~~-----~~~--~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il  737 (887)
                      ..     ...  ..+++..+|+......+.       +......|..++++++.+++++++++  .|..+.++++|.++.
T Consensus       151 ~~~~~~~~~~~~~~~~i~vi~n~~~~~~~~-------~~~~~~~~~~~~~~~~~~~il~~g~l~~~K~~~~li~a~~~l~  223 (371)
T cd04962         151 ESLRQETYELFDITKEIEVIPNFVDEDRFR-------PKPDEALKRRLGAPEGEKVLIHISNFRPVKRIDDVIRIFAKVR  223 (371)
T ss_pred             HHHHHHHHHhcCCcCCEEEecCCcCHhhcC-------CCchHHHHHhcCCCCCCeEEEEecccccccCHHHHHHHHHHHH
Confidence            21     111  245677777654321111       11112345678888888888888886  599999999999886


Q ss_pred             hhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCcee
Q 002729          738 RRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMI  816 (887)
Q Consensus       738 ~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvv  816 (887)
                      ++ ++.+|+++|.++. ...+++.+.+.|+ .++|.|.|..+  +...+|..+|+++-|..++| |++++|||++|+|||
T Consensus       224 ~~-~~~~l~i~G~g~~-~~~~~~~~~~~~~-~~~v~~~g~~~--~~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g~PvI  298 (371)
T cd04962         224 KE-VPARLLLVGDGPE-RSPAERLARELGL-QDDVLFLGKQD--HVEELLSIADLFLLPSEKESFGLAALEAMACGVPVV  298 (371)
T ss_pred             hc-CCceEEEEcCCcC-HHHHHHHHHHcCC-CceEEEecCcc--cHHHHHHhcCEEEeCCCcCCCccHHHHHHHcCCCEE
Confidence            65 5589999998765 6678888899998 58899999654  56777899999999977777 999999999999999


Q ss_pred             eecccchhhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 002729          817 TLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSV  873 (887)
Q Consensus       817 t~~g~~~~~r~~~~~l~~~g~~~~~~~--~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~  873 (887)
                      +......++-+..      |..+ +++  .|.+++++....+..|++.+..++++.++.
T Consensus       299 ~s~~~~~~e~i~~------~~~G-~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~  350 (371)
T cd04962         299 ASNAGGIPEVVKH------GETG-FLVDVGDVEAMAEYALSLLEDDELWQEFSRAARNR  350 (371)
T ss_pred             EeCCCCchhhhcC------CCce-EEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            8766555543221      4455 555  489999999999999999999999988876

Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog

>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase

Probab=99.55  E-value=1.8e-13  Score=153.80  Aligned_cols=320  Identities=11%  Similarity=0.047  Sum_probs=190.9

Q ss_pred             CcccceeeeecC-CCCCChhH--HhhhHHhhcCCCCCcEEEEEecCCCCChHHHH-HH---HhhcCceE---ECCCCCHH
Q 002729          533 GLRRLRVGYVSS-DFGNHPLS--HLMGSVFGMHNKENVEVFCYALSPNDGTEWRQ-RT---QSEAEHFV---DVSAMSSD  602 (887)
Q Consensus       533 ~~~~lriGyvs~-d~~~h~~~--~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~-~~---~~~~~~~~---~~~~~~~~  602 (887)
                      ..+++||..+.. .+..|.-|  ..+..+.+.+.+.++||+++...+........ .+   ......+.   ........
T Consensus        55 ~~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~  134 (465)
T PLN02871         55 RSRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGVPQEFHGAKVIGSWSFPCPFYQKVPLSLALSP  134 (465)
T ss_pred             cCCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCCCccccCceeeccCCcCCccCCCceeeccCCH
Confidence            367899997753 33344433  46667788888888999988865432111100 00   00000000   00000123


Q ss_pred             HHHHHHHhCCCeEEEecCCcCCCC-chhhhhcCCCceEEeccccCCCC----CCCc----c----c--EEEecCccCCCC
Q 002729          603 MIAKLINEDKIQILINLNGYTKGA-RNEIFAMQPAPIQVSYMGFPGTT----GASY----I----D--YLVTDEFVSPLR  667 (887)
Q Consensus       603 ~~~~~i~~~~~dil~~~~~~~~~~-~~~~~~~r~apvq~~~~g~~~t~----g~~~----~----d--~~~~d~~~~p~~  667 (887)
                      .+.+.|++.++||++--+.+.... ...+......|+.+++-++....    +...    +    .  +..+|.++.++.
T Consensus       135 ~l~~~i~~~kpDiIh~~~~~~~~~~~~~~ak~~~ip~V~~~h~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ad~ii~~S~  214 (465)
T PLN02871        135 RIISEVARFKPDLIHASSPGIMVFGALFYAKLLCVPLVMSYHTHVPVYIPRYTFSWLVKPMWDIIRFLHRAADLTLVTSP  214 (465)
T ss_pred             HHHHHHHhCCCCEEEECCCchhHHHHHHHHHHhCCCEEEEEecCchhhhhcccchhhHHHHHHHHHHHHhhCCEEEECCH
Confidence            678899999999986432211110 01112234578888765442111    0000    0    0  012344444433


Q ss_pred             c-----CCCC---ccceeecCCccccCCCccccccCCCCCCCCCCCCCC-CCCCcEEEEecCCC--CCCCHHHHHHHHHH
Q 002729          668 Y-----AHIY---SEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYG-LPEDKFIFACFNQL--YKMDPEIFNTWCNI  736 (887)
Q Consensus       668 ~-----~~~~---~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~-l~~~~~~~~~~~~~--~k~~~~~~~~~~~i  736 (887)
                      .     ...+   .+++..+|++.....+.+.      ......|..++ .+++.+++++++++  .|..+.+++    +
T Consensus       215 ~~~~~l~~~~~~~~~kv~vi~nGvd~~~f~p~------~~~~~~~~~~~~~~~~~~~i~~vGrl~~~K~~~~li~----a  284 (465)
T PLN02871        215 ALGKELEAAGVTAANRIRVWNKGVDSESFHPR------FRSEEMRARLSGGEPEKPLIVYVGRLGAEKNLDFLKR----V  284 (465)
T ss_pred             HHHHHHHHcCCCCcCeEEEeCCccCccccCCc------cccHHHHHHhcCCCCCCeEEEEeCCCchhhhHHHHHH----H
Confidence            2     1112   4567777775443222110      00111222332 23456777777876  476655554    4


Q ss_pred             HhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCce
Q 002729          737 LRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPM  815 (887)
Q Consensus       737 l~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPv  815 (887)
                      ++..|+.+|+|+|.++. ++.+++.+.     ..+|+|+|.++.++...+|..+|+++-|..++| |.+++|||+||+||
T Consensus       285 ~~~~~~~~l~ivG~G~~-~~~l~~~~~-----~~~V~f~G~v~~~ev~~~~~~aDv~V~pS~~E~~g~~vlEAmA~G~PV  358 (465)
T PLN02871        285 MERLPGARLAFVGDGPY-REELEKMFA-----GTPTVFTGMLQGDELSQAYASGDVFVMPSESETLGFVVLEAMASGVPV  358 (465)
T ss_pred             HHhCCCcEEEEEeCChH-HHHHHHHhc-----cCCeEEeccCCHHHHHHHHHHCCEEEECCcccccCcHHHHHHHcCCCE
Confidence            55678999999998876 566666654     246999999999999999999999999977777 99999999999999


Q ss_pred             eeecccchhhhhHHHHHHh--cCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 002729          816 ITLPLEKMATRVAGSLCLA--TGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVR  874 (887)
Q Consensus       816 vt~~g~~~~~r~~~~~l~~--~g~~~~~~~--~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~~  874 (887)
                      |+-......+     ++..  .|-.+ ++.  .|.+++.+...++..|++.++++++..++..
T Consensus       359 I~s~~gg~~e-----iv~~~~~~~~G-~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~  415 (465)
T PLN02871        359 VAARAGGIPD-----IIPPDQEGKTG-FLYTPGDVDDCVEKLETLLADPELRERMGAAAREEV  415 (465)
T ss_pred             EEcCCCCcHh-----hhhcCCCCCce-EEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            9765444333     2222  25556 554  5899999999999999999999999888754

>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria

Probab=99.54  E-value=7.2e-14  Score=152.50  Aligned_cols=313  Identities=13%  Similarity=0.114  Sum_probs=197.4

Q ss_pred             eeeeecCCCCCChhHHhhhHHhhcCCCCCcEEEEEecCCCCChHHHHHHHhhcC--c--eEECCCC-CHHHHHHHHHhCC
Q 002729          538 RVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAE--H--FVDVSAM-SSDMIAKLINEDK  612 (887)
Q Consensus       538 riGyvs~d~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~-~~~~~~~~i~~~~  612 (887)
                      ||-||+..|..- ...++..+++.+.+.+++|.+++..+...............  .  ...+..+ ....+.+.+++.+
T Consensus         1 ki~~~~~~~~~~-~~~~~~~~~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (355)
T cd03799           1 KIAYLVKEFPRL-SETFILREILALEAAGHEVEIFSLRPPEDTLVHPEDRAELARTRYLARSLALLAQALVLARELRRLG   79 (355)
T ss_pred             CEEEECCCCCCc-chHHHHHHHHHHHhCCCeEEEEEecCcccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            578888877332 34566777777778889998888665432111000000000  0  0001111 1345667778899


Q ss_pred             CeEEEecCCcCCCCchhhhhcC--CCceEEeccccCCCCC---------CCcccEEEecCccCCCCcC---CCCccceee
Q 002729          613 IQILINLNGYTKGARNEIFAMQ--PAPIQVSYMGFPGTTG---------ASYIDYLVTDEFVSPLRYA---HIYSEKLVH  678 (887)
Q Consensus       613 ~dil~~~~~~~~~~~~~~~~~r--~apvq~~~~g~~~t~g---------~~~~d~~~~d~~~~p~~~~---~~~~e~~~~  678 (887)
                      +||++--.++... ....+..+  ..|+.++..|+.....         +...|.+++..-..-....   ....+++..
T Consensus        80 ~Dii~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~s~~~~~~l~~~~~~~~~~~~v  158 (355)
T cd03799          80 IDHIHAHFGTTPA-TVAMLASRLGGIPYSFTAHGKDIFRSPDAIDLDEKLARADFVVAISEYNRQQLIRLLGCDPDKIHV  158 (355)
T ss_pred             CCEEEECCCCchH-HHHHHHHHhcCCCEEEEEecccccccCchHHHHHHHhhCCEEEECCHHHHHHHHHhcCCCcccEEE
Confidence            9999754443211 12222222  2466665554432211         2335555542211111111   134566777


Q ss_pred             cCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCC--CCCCCHHHHHHHHHHHhhcCCceEEEecCChhhHH
Q 002729          679 VPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQ--LYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEM  756 (887)
Q Consensus       679 lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~--~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~  756 (887)
                      +|++.......        +..      ...+.+.+.++++++  ..|..+.+++++.++....|+.++.++|.++. ..
T Consensus       159 i~~~~d~~~~~--------~~~------~~~~~~~~~i~~~g~~~~~k~~~~l~~~~~~l~~~~~~~~l~i~G~~~~-~~  223 (355)
T cd03799         159 VHCGVDLERFP--------PRP------PPPPGEPLRILSVGRLVEKKGLDYLLEALALLKDRGIDFRLDIVGDGPL-RD  223 (355)
T ss_pred             EeCCcCHHHcC--------Ccc------ccccCCCeEEEEEeeeccccCHHHHHHHHHHHhhcCCCeEEEEEECCcc-HH
Confidence            77653221111        100      112233455555555  46999999999999888889999999998766 66


Q ss_pred             HHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCC------CC-chhHHHHHHhCCceeeecccchhhhhHH
Q 002729          757 RLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLC------NA-HTTGTDILWAGLPMITLPLEKMATRVAG  829 (887)
Q Consensus       757 ~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~------~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~  829 (887)
                      .+.+.+.+.++ .++|.|.|.++.++....|..+|++|-|+.+      .| |++++|||++|+|||+.......+.+. 
T Consensus       224 ~~~~~~~~~~~-~~~v~~~g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~i~-  301 (355)
T cd03799         224 ELEALIAELGL-EDRVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSGIPELVE-  301 (355)
T ss_pred             HHHHHHHHcCC-CCeEEECCcCChHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCCcchhhh-
Confidence            78888888888 6889999999999999999999999999776      45 999999999999999876655544322 


Q ss_pred             HHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcc
Q 002729          830 SLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVRL  875 (887)
Q Consensus       830 ~~l~~~g~~~~~~~--~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~~~  875 (887)
                          . |-.+ ++.  .|.+++++....+..|++.+..+++..++...
T Consensus       302 ----~-~~~g-~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~a~~~~~  343 (355)
T cd03799         302 ----D-GETG-LLVPPGDPEALADAIERLLDDPELRREMGEAGRARVE  343 (355)
T ss_pred             ----C-CCce-EEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence                1 3344 444  48999999999999999999999988887653

amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.54  E-value=7.4e-13  Score=134.54  Aligned_cols=185  Identities=19%  Similarity=0.140  Sum_probs=123.3

Q ss_pred             hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH---HHHh
Q 002729          236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFL---EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQ---ALTN  309 (887)
Q Consensus       236 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~  309 (887)
                      ...++.+|..+...|++++|+..+++++...|+++   .+++.+|.++...|++++|+..++++++..|+++.   +++.
T Consensus        33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~  112 (235)
T TIGR03302        33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL  112 (235)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence            56677777777777777777777777777776654   46677777777777777777777777777776654   5666


Q ss_pred             HHHHHHHc--------CChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 002729          310 LGNIYMEW--------NMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNT  381 (887)
Q Consensus       310 l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  381 (887)
                      +|.++...        |++++|.+.|++++..+|++...+..+..+...    ...             .......+|..
T Consensus       113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~----~~~-------------~~~~~~~~a~~  175 (235)
T TIGR03302       113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYL----RNR-------------LAGKELYVARF  175 (235)
T ss_pred             HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHH----HHH-------------HHHHHHHHHHH
Confidence            67776654        556666666666666666654443222211110    000             01123466777


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 002729          382 YKEIGRVTDAIQDYIRAITIRPTM---AEAHANLASAYKDSGHVEAAIKSYKQALLLRP  437 (887)
Q Consensus       382 ~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  437 (887)
                      +...|++.+|+..++++++..|+.   +.+++.+|.++.+.|++++|..+++.+....|
T Consensus       176 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       176 YLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             HHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            888888888888888888876553   57888888888888888888888777766554

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases

Probab=99.54  E-value=6.7e-13  Score=145.24  Aligned_cols=312  Identities=16%  Similarity=0.158  Sum_probs=198.4

Q ss_pred             eeeeecCCCCCChhHHhhhHHhhcCCCCCcEEEEEecCCCCChHHHHHHHhhcCceEEC--CC-----CCHHHHHHHHHh
Q 002729          538 RVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDV--SA-----MSSDMIAKLINE  610 (887)
Q Consensus       538 riGyvs~d~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~i~~  610 (887)
                      ||.+|.+.|..--+...+..+++.+.+.++++.++.......  ....+...--..+.+  ..     .....+.+.++.
T Consensus         1 ~i~~i~~~~~~gG~~~~~~~l~~~l~~~~~~v~~~~~~~~~~--~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~   78 (365)
T cd03807           1 KVLHVITGLDVGGAERMLVRLLKGLDRDRFEHVVISLTDRGE--LGEELEEAGVPVYCLGKRPGRPDPGALLRLYKLIRR   78 (365)
T ss_pred             CeEEEEeeccCccHHHHHHHHHHHhhhccceEEEEecCcchh--hhHHHHhcCCeEEEEecccccccHHHHHHHHHHHHh
Confidence            567777777543344677788888988888888777543321  222233211111111  11     113567888899


Q ss_pred             CCCeEEEecCCcCCCCchhhhhc-CCCceEEeccccCCCCC--------------CCcccEEEecCccCCCCc-------
Q 002729          611 DKIQILINLNGYTKGARNEIFAM-QPAPIQVSYMGFPGTTG--------------ASYIDYLVTDEFVSPLRY-------  668 (887)
Q Consensus       611 ~~~dil~~~~~~~~~~~~~~~~~-r~apvq~~~~g~~~t~g--------------~~~~d~~~~d~~~~p~~~-------  668 (887)
                      .++||++....++.......... +..|+..+..+.....+              ....|.+++     ++..       
T Consensus        79 ~~~div~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~s~~~~~~~~~  153 (365)
T cd03807          79 LRPDVVHTWMYHADLYGGLAARLAGVPPVIWGIRHSDLDLGKKSTRLVARLRRLLSSFIPLIVA-----NSAAAAEYHQA  153 (365)
T ss_pred             hCCCEEEeccccccHHHHHHHHhcCCCcEEEEecCCcccccchhHhHHHHHHHHhccccCeEEe-----ccHHHHHHHHH
Confidence            99999986554432211111111 34566555444333221              122333222     2221       


Q ss_pred             CCCCccceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEE
Q 002729          669 AHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALW  746 (887)
Q Consensus       669 ~~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~  746 (887)
                      .....+++..+|++.-...+..     ........|..+|++++.++++.+++.  .|..+.+++++.++.+..|+.+|+
T Consensus       154 ~~~~~~~~~vi~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~  228 (365)
T cd03807         154 IGYPPKKIVVIPNGVDTERFSP-----DLDARARLREELGLPEDTFLIGIVARLHPQKDHATLLRAAALLLKKFPNARLL  228 (365)
T ss_pred             cCCChhheeEeCCCcCHHhcCC-----cccchHHHHHhcCCCCCCeEEEEecccchhcCHHHHHHHHHHHHHhCCCeEEE
Confidence            1233456666776533211110     001112245678898888888888886  588999999999999889999999


Q ss_pred             EecCChhhHHHHHHHHH-HcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccchh
Q 002729          747 LLRFPAAGEMRLRAYAV-AQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMA  824 (887)
Q Consensus       747 ~~~~~~~~~~~l~~~~~-~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~  824 (887)
                      ++|.++. ...+..... ..|+ .++|.|.|..  .+...+|..+|+++-|..++| |++++|||++|+|||+.......
T Consensus       229 i~G~~~~-~~~~~~~~~~~~~~-~~~v~~~g~~--~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~~~~~  304 (365)
T cd03807         229 LVGDGPD-RANLELLALKELGL-EDKVILLGER--SDVPALLNALDVFVLSSLSEGFPNVLLEAMACGLPVVATDVGDNA  304 (365)
T ss_pred             EecCCcc-hhHHHHHHHHhcCC-CceEEEcccc--ccHHHHHHhCCEEEeCCccccCCcHHHHHHhcCCCEEEcCCCChH
Confidence            9987665 444555554 7788 5889999854  467788999999999977766 99999999999999986655444


Q ss_pred             hhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 002729          825 TRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVR  874 (887)
Q Consensus       825 ~r~~~~~l~~~g~~~~~~~--~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~~  874 (887)
                      +-+.     .   .+ ++.  .|.+++++....+..|++.+..++...++..
T Consensus       305 e~~~-----~---~g-~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~  347 (365)
T cd03807         305 ELVG-----D---TG-FLVPPGDPEALAEAIEALLADPALRQALGEAARERI  347 (365)
T ss_pred             HHhh-----c---CC-EEeCCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence            4322     2   23 333  6899999999999999999988888877654

WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.53  E-value=1.3e-12  Score=132.89  Aligned_cols=188  Identities=19%  Similarity=0.127  Sum_probs=128.0

Q ss_pred             CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH---H
Q 002729           30 PLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFA---ECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFAD---A  103 (887)
Q Consensus        30 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~  103 (887)
                      +..+..++.+|..++..|++++|+..+++++..+|.++   .+++.+|.++...|++++|+..|+++++..|+++.   +
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a  109 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA  109 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence            34577888888888888888888888888888887764   56788888888888888888888888888877654   5


Q ss_pred             HHHHHHHHHHc--------CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHH
Q 002729          104 WSNLASAYMRK--------GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNL  175 (887)
Q Consensus       104 ~~~la~~~~~~--------g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  175 (887)
                      ++.+|.++...        |++++|++.+++++..+|++......+..+....+    .             .......+
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~----~-------------~~~~~~~~  172 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN----R-------------LAGKELYV  172 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----H-------------HHHHHHHH
Confidence            77778777765        66777777777777777776554432222211100    0             01122355


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 002729          176 AGLFMESGDLNRALQYYKEAVKLKPTF---PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP  234 (887)
Q Consensus       176 a~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p  234 (887)
                      +..+...|++.+|+..++++++..|+.   +.++..++.++...|++++|..+++.+....|
T Consensus       173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            666777777777777777777665543   35667777777777777777776666655443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional

Probab=99.52  E-value=1.7e-13  Score=148.82  Aligned_cols=306  Identities=13%  Similarity=0.169  Sum_probs=180.7

Q ss_pred             ceeeeecCCCCC-ChhHHhhhHHhhcCCCC--CcEEEEEecCCCCChHHHHHHHhh--cC-ceEECCC--CCHHHHHHHH
Q 002729          537 LRVGYVSSDFGN-HPLSHLMGSVFGMHNKE--NVEVFCYALSPNDGTEWRQRTQSE--AE-HFVDVSA--MSSDMIAKLI  608 (887)
Q Consensus       537 lriGyvs~d~~~-h~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~--~~~~~~~~~i  608 (887)
                      +||.++...+.. .=+..++..+.+++.+.  ++|++++.........+.+.+...  .. .......  .....+.+.+
T Consensus         1 mkI~~~~~~~~~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l   80 (359)
T PRK09922          1 MKIAFIGEAVSGFGGMETVISNVINTFEESKINCEMFFFCRNDKMDKAWLKEIKYAQSFSNIKLSFLRRAKHVYNFSKWL   80 (359)
T ss_pred             CeeEEecccccCCCchhHHHHHHHHHhhhcCcceeEEEEecCCCCChHHHHhcchhcccccchhhhhcccHHHHHHHHHH
Confidence            478888765432 12336777888888887  799988886543322222222110  00 0001000  1135677899


Q ss_pred             HhCCCeEEEecCCcCCCCchhhhhcC--CCce-EEeccc--cCCCCCCCcccEEEecCccCCCCcC-------CCCccce
Q 002729          609 NEDKIQILINLNGYTKGARNEIFAMQ--PAPI-QVSYMG--FPGTTGASYIDYLVTDEFVSPLRYA-------HIYSEKL  676 (887)
Q Consensus       609 ~~~~~dil~~~~~~~~~~~~~~~~~r--~apv-q~~~~g--~~~t~g~~~~d~~~~d~~~~p~~~~-------~~~~e~~  676 (887)
                      ++.++||++..+...  ......+.+  -.|+ .++|..  .+.........+..+|.++.++...       ....+++
T Consensus        81 ~~~~~Dii~~~~~~~--~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~d~~i~~S~~~~~~~~~~~~~~~ki  158 (359)
T PRK09922         81 KETQPDIVICIDVIS--CLYANKARKKSGKQFKIFSWPHFSLDHKKHAECKKITCADYHLAISSGIKEQMMARGISAQRI  158 (359)
T ss_pred             HhcCCCEEEEcCHHH--HHHHHHHHHHhCCCCeEEEEecCcccccchhhhhhhhcCCEEEEcCHHHHHHHHHcCCCHHHE
Confidence            999999997543211  111111111  1233 233321  1111111111122334433333321       1123556


Q ss_pred             eecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCC----CCCCHHHHHHHHHHHhhcCCceEEEecCCh
Q 002729          677 VHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL----YKMDPEIFNTWCNILRRVPNSALWLLRFPA  752 (887)
Q Consensus       677 ~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~----~k~~~~~~~~~~~il~~~p~~~l~~~~~~~  752 (887)
                      ..+|++.......       .+  .+.      .++.+++++++++    .|....+++++.++.   ++.+|+++|.++
T Consensus       159 ~vi~N~id~~~~~-------~~--~~~------~~~~~~i~~~Grl~~~~~k~~~~l~~a~~~~~---~~~~l~ivG~g~  220 (359)
T PRK09922        159 SVIYNPVEIKTII-------IP--PPE------RDKPAVFLYVGRLKFEGQKNVKELFDGLSQTT---GEWQLHIIGDGS  220 (359)
T ss_pred             EEEcCCCCHHHcc-------CC--Ccc------cCCCcEEEEEEEEecccCcCHHHHHHHHHhhC---CCeEEEEEeCCc
Confidence            6666644211100       00  000      1234566666664    377888888887652   478999999887


Q ss_pred             hhHHHHHHHHHHcCCCCCcEEEcCCCCc--HHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeec-ccchhhhhH
Q 002729          753 AGEMRLRAYAVAQGVQPDQIIFTDVAMK--QEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLP-LEKMATRVA  828 (887)
Q Consensus       753 ~~~~~l~~~~~~~g~~~~r~~~~~~~~~--~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~-g~~~~~r~~  828 (887)
                      . .+.+++.+.+.|+ .++|.|.|..+.  ++....|..+|+++-|..+.| |.+++|||+||+|||+.. .....+   
T Consensus       221 ~-~~~l~~~~~~~~l-~~~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g~~e---  295 (359)
T PRK09922        221 D-FEKCKAYSRELGI-EQRIIWHGWQSQPWEVVQQKIKNVSALLLTSKFEGFPMTLLEAMSYGIPCISSDCMSGPRD---  295 (359)
T ss_pred             c-HHHHHHHHHHcCC-CCeEEEecccCCcHHHHHHHHhcCcEEEECCcccCcChHHHHHHHcCCCEEEeCCCCChHH---
Confidence            6 7788999999999 689999998743  566778899999999988888 999999999999999876 444443   


Q ss_pred             HHHHHhcCCCCccc--cCCHHHHHHHHHHHhcCHHH--HHHHHHHHH
Q 002729          829 GSLCLATGLGEEMI--VNSMKEYEERAVSLALDRQK--LQALTNKLK  871 (887)
Q Consensus       829 ~~~l~~~g~~~~~~--~~~~~~y~~~a~~l~~d~~~--~~~~~~~~~  871 (887)
                        ++.. |.++ ++  ..|.+++++....+.+|++.  ..+.+..++
T Consensus       296 --iv~~-~~~G-~lv~~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~  338 (359)
T PRK09922        296 --IIKP-GLNG-ELYTPGNIDEFVGKLNKVISGEVKYQHDAIPNSIE  338 (359)
T ss_pred             --HccC-CCce-EEECCCCHHHHHHHHHHHHhCcccCCHHHHHHHHH
Confidence              2222 5556 44  37899999999999999883  444444443

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.52  E-value=4.3e-12  Score=119.26  Aligned_cols=188  Identities=22%  Similarity=0.162  Sum_probs=169.1

Q ss_pred             cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhH
Q 002729          265 CDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNL  344 (887)
Q Consensus       265 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l  344 (887)
                      ..++....+-.+..+....|+.+-|..++++.....|.+..+....|..+...|++++|+++|+..++.+|.+..++...
T Consensus        47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRK  126 (289)
T KOG3060|consen   47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRK  126 (289)
T ss_pred             cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHH
Confidence            44555566777778888889999999999999888899999999999999999999999999999999999999999988


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCC---C
Q 002729          345 AVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG---H  421 (887)
Q Consensus       345 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~  421 (887)
                      ..+...+|+.-+|++.+.+.++..+.+.++|..++.+|...|++++|.-++++++-+.|.++..+..++.+++-+|   +
T Consensus       127 lAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN  206 (289)
T KOG3060|consen  127 LAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAEN  206 (289)
T ss_pred             HHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHH
Confidence            8888899999999999999999999999999999999999999999999999999999999999999999988877   6


Q ss_pred             HHHHHHHHHHHHHcCCCChHHHHHHHHHhhh
Q 002729          422 VEAAIKSYKQALLLRPDFPEATCNLLHTLQC  452 (887)
Q Consensus       422 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  452 (887)
                      ++-|.++|.++++++|.+..+++.+..+...
T Consensus       207 ~~~arkyy~~alkl~~~~~ral~GI~lc~~~  237 (289)
T KOG3060|consen  207 LELARKYYERALKLNPKNLRALFGIYLCGSA  237 (289)
T ss_pred             HHHHHHHHHHHHHhChHhHHHHHHHHHHHHH
Confidence            7889999999999999888888887665544

>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases

Probab=99.51  E-value=7.2e-13  Score=147.10  Aligned_cols=163  Identities=18%  Similarity=0.187  Sum_probs=131.2

Q ss_pred             CCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEecCChhh-----HHHHHHHHHHcCCCCCcEEEcC
Q 002729          704 RSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAG-----EMRLRAYAVAQGVQPDQIIFTD  776 (887)
Q Consensus       704 r~~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~-----~~~l~~~~~~~g~~~~r~~~~~  776 (887)
                      |..++.+.+.++|+.++++  .|..+.+++++.++.+..|+.+|+++|.++..     ...++......|+ .++|.|.|
T Consensus       211 ~~~~~~~~~~~~i~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~g  289 (398)
T cd03800         211 RARLLRDPDKPRILAVGRLDPRKGIDTLIRAYAELPELRERANLVIVGGPRDDILAMDEEELRELARELGV-IDRVDFPG  289 (398)
T ss_pred             HHhhccCCCCcEEEEEcccccccCHHHHHHHHHHHHHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCC-CceEEEec
Confidence            4556677777888888886  48899999999999888999999999865431     2346677788898 58999999


Q ss_pred             CCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCcccc--CCHHHHHHHH
Q 002729          777 VAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERA  853 (887)
Q Consensus       777 ~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~--~~~~~y~~~a  853 (887)
                      .++..+...++..+|++|-|.-+.| |++.+|||++|+|||+-......+-+.     . |-.+ +++  .|.+++++..
T Consensus       290 ~~~~~~~~~~~~~adi~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~~~e~i~-----~-~~~g-~~~~~~~~~~l~~~i  362 (398)
T cd03800         290 RVSREDLPALYRAADVFVNPALYEPFGLTALEAMACGLPVVATAVGGPRDIVV-----D-GVTG-LLVDPRDPEALAAAL  362 (398)
T ss_pred             cCCHHHHHHHHHhCCEEEecccccccCcHHHHHHhcCCCEEECCCCCHHHHcc-----C-CCCe-EEeCCCCHHHHHHHH
Confidence            9999999999999999999966666 999999999999999876655544332     1 3334 554  4799999999


Q ss_pred             HHHhcCHHHHHHHHHHHHhhc
Q 002729          854 VSLALDRQKLQALTNKLKSVR  874 (887)
Q Consensus       854 ~~l~~d~~~~~~~~~~~~~~~  874 (887)
                      ..+..|++.++.++.+.++..
T Consensus       363 ~~l~~~~~~~~~~~~~a~~~~  383 (398)
T cd03800         363 RRLLTDPALRRRLSRAGLRRA  383 (398)
T ss_pred             HHHHhCHHHHHHHHHHHHHHH
Confidence            999999999999998887653

The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.

>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases

Probab=99.51  E-value=3.1e-13  Score=147.50  Aligned_cols=305  Identities=12%  Similarity=0.099  Sum_probs=189.5

Q ss_pred             HhhhHHhhcCCCCCcEEEEEecCCCCChHHHHHHHhhcCceEECCC---------CCHHHHHHHHHhCCCeEEEecCCcC
Q 002729          553 HLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSA---------MSSDMIAKLINEDKIQILINLNGYT  623 (887)
Q Consensus       553 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~i~~~~~dil~~~~~~~  623 (887)
                      ..+..+.+.+.+.+++|++++.+...    ...+......++.+..         .....+.+.++..++||++.-+.++
T Consensus        14 ~~~~~l~~~L~~~g~~v~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dii~~~~~~~   89 (355)
T cd03819          14 RGTLELARALVERGHRSLVASAGGRL----VAELEAEGSRHIKLPFISKNPLRILLNVARLRRLIREEKVDIVHARSRAP   89 (355)
T ss_pred             HHHHHHHHHHHHcCCEEEEEcCCCch----HHHHHhcCCeEEEccccccchhhhHHHHHHHHHHHHHcCCCEEEECCCch
Confidence            45566677777778999888754321    1222222112222110         1235567888999999997644332


Q ss_pred             CCCchhhhhcCCCceEEeccccCCCCC-----CCcccEEEecCccCCCC---cCCCCccceeecCCccccCCCccccccC
Q 002729          624 KGARNEIFAMQPAPIQVSYMGFPGTTG-----ASYIDYLVTDEFVSPLR---YAHIYSEKLVHVPHCYFVNDYKQKNMDV  695 (887)
Q Consensus       624 ~~~~~~~~~~r~apvq~~~~g~~~t~g-----~~~~d~~~~d~~~~p~~---~~~~~~e~~~~lp~~~~~~~~~~~~~~~  695 (887)
                      .............|+..++.|+....+     +...|.+++-.-.....   .-....+++..+|++.-...+...    
T Consensus        90 ~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~vi~~s~~~~~~~~~~~~~~~~k~~~i~ngi~~~~~~~~----  165 (355)
T cd03819          90 AWSAYLAARRTRPPFVTTVHGFYSVNFRYNAIMARGDRVIAVSNFIADHIRENYGVDPDRIRVIPRGVDLDRFDPG----  165 (355)
T ss_pred             hHHHHHHHHhcCCCEEEEeCCchhhHHHHHHHHHhcCEEEEeCHHHHHHHHHhcCCChhhEEEecCCccccccCcc----
Confidence            111111111234677766655543221     23345554411000000   112234677778875432211100    


Q ss_pred             CCCCC--CCCCCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEecCChhh---HHHHHHHHHHcCCC
Q 002729          696 LDPNC--QPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAG---EMRLRAYAVAQGVQ  768 (887)
Q Consensus       696 ~~~~~--~~~r~~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~---~~~l~~~~~~~g~~  768 (887)
                      .....  ...|..++++++.++++..+++  .|..+.+++++..+....|+.+|+++|.++..   ...+.+.+.+.|+ 
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~-  244 (355)
T cd03819         166 AVPPERILALAREWPLPKGKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQGRRFYYAELLELIKRLGL-  244 (355)
T ss_pred             ccchHHHHHHHHHcCCCCCceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCcccchHHHHHHHHHHHcCC-
Confidence            00000  0034566777888888887775  69999999999999888789999999976542   2445667788888 


Q ss_pred             CCcEEEcCCCCcHHHHHhccCCcEEecCC-CCCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCcccc--C
Q 002729          769 PDQIIFTDVAMKQEHIRRSSLADLFLDTP-LCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--N  844 (887)
Q Consensus       769 ~~r~~~~~~~~~~~~~~~~~~~d~~ld~~-~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~--~  844 (887)
                      .++|.|.|.  .++...++..+|+++-|+ ...| |++++|||++|+|||+.......+.+..      |..+ ++.  .
T Consensus       245 ~~~v~~~g~--~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~~~~e~i~~------~~~g-~~~~~~  315 (355)
T cd03819         245 QDRVTFVGH--CSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHGGARETVRP------GETG-LLVPPG  315 (355)
T ss_pred             cceEEEcCC--cccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCCCcHHHHhC------CCce-EEeCCC
Confidence            589999998  567788899999999997 4555 9999999999999998776555554332      3345 443  6


Q ss_pred             CHHHHHHHHHHHh-cCHHHHHHHHHHHHhhcc
Q 002729          845 SMKEYEERAVSLA-LDRQKLQALTNKLKSVRL  875 (887)
Q Consensus       845 ~~~~y~~~a~~l~-~d~~~~~~~~~~~~~~~~  875 (887)
                      |.+++++....+. .|++.+.+++++.++...
T Consensus       316 ~~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~  347 (355)
T cd03819         316 DAEALAQALDQILSLLPEGRAKMFAKARMCVE  347 (355)
T ss_pred             CHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence            8888888775444 589999999999887653

WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.50  E-value=4.7e-13  Score=122.85  Aligned_cols=124  Identities=15%  Similarity=0.125  Sum_probs=104.3

Q ss_pred             HHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 002729          324 ASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRP  403 (887)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  403 (887)
                      ..+++++++.+|++   +..+|..+...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|+++++.+|
T Consensus        13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p   89 (144)
T PRK15359         13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA   89 (144)
T ss_pred             HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            45677777777764   556788888888888888888888888888888888899988889999999999999998888


Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Q 002729          404 TMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTL  450 (887)
Q Consensus       404 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  450 (887)
                      +++.+++++|.++...|++++|+..|+++++..|+++..+.+.....
T Consensus        90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~  136 (144)
T PRK15359         90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ  136 (144)
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            88889999999999999999999999999998888888887665544

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.50  E-value=6.4e-12  Score=143.51  Aligned_cols=243  Identities=12%  Similarity=0.064  Sum_probs=185.1

Q ss_pred             hCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHhhHH
Q 002729          164 IQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLA  243 (887)
Q Consensus       164 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~la  243 (887)
                      .+|.+..++..++..+...+++++|++.++..++..|+....++.+|.++.+.+++.++...  .++..           
T Consensus        26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~-----------   92 (906)
T PRK14720         26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS-----------   92 (906)
T ss_pred             CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh-----------
Confidence            46788888888888888888999999998888888888888888888888888887666555  44433           


Q ss_pred             HHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHH
Q 002729          244 STYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAA  323 (887)
Q Consensus       244 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  323 (887)
                        .....++ .+++++...+...+++..+++.+|.+|-++|+.++|...++++++.+|+++.+++++|..|... +.++|
T Consensus        93 --~~~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA  168 (906)
T PRK14720         93 --FSQNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKA  168 (906)
T ss_pred             --cccccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHH
Confidence              2333444 4555555555557777778999999999999999999999999999999999999999999988 99999


Q ss_pred             HHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 002729          324 ASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRP  403 (887)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  403 (887)
                      ++++.+++..              +...+++.++.+++.+.+..+|++.+.+..+-......-....+            
T Consensus       169 ~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~------------  222 (906)
T PRK14720        169 ITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRL------------  222 (906)
T ss_pred             HHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchh------------
Confidence            9999988754              66777999999999999999998877655443332222112222            


Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHhh
Q 002729          404 TMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ  451 (887)
Q Consensus       404 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  451 (887)
                        ...+.-+-..|...+++++++.+++.+++.+|++..+...++.+|.
T Consensus       223 --~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~  268 (906)
T PRK14720        223 --VGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK  268 (906)
T ss_pred             --HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence              3344555566777777778888888888888877777777777776

>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases

Probab=99.50  E-value=4.6e-13  Score=147.76  Aligned_cols=155  Identities=14%  Similarity=0.100  Sum_probs=123.9

Q ss_pred             CCcEEEEecCCC--CCCCHHHHHHHHHHHhh------cCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHH
Q 002729          711 EDKFIFACFNQL--YKMDPEIFNTWCNILRR------VPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQE  782 (887)
Q Consensus       711 ~~~~~~~~~~~~--~k~~~~~~~~~~~il~~------~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~  782 (887)
                      ++.+++++.+++  .|..+.+++++..+.+.      .|+.+|+|+|.|+. ++.+++.+++.|++ +.+.|.|.++.++
T Consensus       230 ~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G~~-~~~l~~~~~~~~l~-~~~~~~g~~~~~~  307 (415)
T cd03816         230 ERPALLVSSTSWTPDEDFGILLDALVAYEKSAATGPKLPKLLCIITGKGPL-KEKYLERIKELKLK-KVTIRTPWLSAED  307 (415)
T ss_pred             CCceEEEEeccccCCCCHHHHHHHHHHHHHhhcccccCCCEEEEEEecCcc-HHHHHHHHHHcCCC-cEEEEcCcCCHHH
Confidence            445667676765  59999999999988752      47899999998876 78999999999983 5555667889999


Q ss_pred             HHHhccCCcEEecCCC---CCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhc
Q 002729          783 HIRRSSLADLFLDTPL---CNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLAL  858 (887)
Q Consensus       783 ~~~~~~~~d~~ld~~~---~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l~~  858 (887)
                      ...+|..+|+++-+.+   ..| +++++|||+||+|||+.......+-+.     . |.++ ++..|.+++.+....|.+
T Consensus       308 ~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~~~~eiv~-----~-~~~G-~lv~d~~~la~~i~~ll~  380 (415)
T cd03816         308 YPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFKCIDELVK-----H-GENG-LVFGDSEELAEQLIDLLS  380 (415)
T ss_pred             HHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCCCHHHHhc-----C-CCCE-EEECCHHHHHHHHHHHHh
Confidence            9999999999985332   123 888999999999999876554444332     2 6667 667899999999999999


Q ss_pred             C---HHHHHHHHHHHHhhc
Q 002729          859 D---RQKLQALTNKLKSVR  874 (887)
Q Consensus       859 d---~~~~~~~~~~~~~~~  874 (887)
                      |   ++.+.+|+++.|+..
T Consensus       381 ~~~~~~~~~~m~~~~~~~~  399 (415)
T cd03816         381 NFPNRGKLNSLKKGAQEES  399 (415)
T ss_pred             cCCCHHHHHHHHHHHHHhh
Confidence            9   999999999888764

The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.

>PLN02501 digalactosyldiacylglycerol synthase

Probab=99.49  E-value=3.7e-13  Score=146.69  Aligned_cols=243  Identities=7%  Similarity=-0.003  Sum_probs=158.1

Q ss_pred             CHHHHHHHHHhCCCeEEEecCCcCCCCc--hhhhhcCCCceEEe----ccccCCCCCCCcccE--------EE----ecC
Q 002729          600 SSDMIAKLINEDKIQILINLNGYTKGAR--NEIFAMQPAPIQVS----YMGFPGTTGASYIDY--------LV----TDE  661 (887)
Q Consensus       600 ~~~~~~~~i~~~~~dil~~~~~~~~~~~--~~~~~~r~apvq~~----~~g~~~t~g~~~~d~--------~~----~d~  661 (887)
                      ....+.+.|.+.++||.+=-+-..-|..  -...+.|.-||..+    +..|-...+...+--        ++    +|.
T Consensus       422 p~gdI~~~L~~f~PDVVHLatP~~LGw~~~Glr~ArKl~PVVasyHTny~eYl~~y~~g~L~~~llk~l~~~v~r~hcD~  501 (794)
T PLN02501        422 PAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFNHVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCHK  501 (794)
T ss_pred             chHHHHHHhhccCCCEEEECCchhhccHHHHHHHHHHcCCeEEEEeCCcHHHHhHhcchhHHHHHHHHHHHHHHHhhCCE
Confidence            3577999999999999974332222222  22234455587655    233333233221111        11    577


Q ss_pred             ccCCCCcCCCCccceeecCCccccCCCccccccCCCCCCC-CCCCCCCCCC--CcEEEEecCCCCCCCHHHHHHHHHHHh
Q 002729          662 FVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQ-PKRSDYGLPE--DKFIFACFNQLYKMDPEIFNTWCNILR  738 (887)
Q Consensus       662 ~~~p~~~~~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~-~~r~~~~l~~--~~~~~~~~~~~~k~~~~~~~~~~~il~  738 (887)
                      ++.|+..........+...++..+        ....|... ..+..+|++.  ..++|.+--...|..+.++++|..+..
T Consensus       502 VIaPS~atq~L~~~vI~nVnGVDt--------e~F~P~~r~~~~r~lgi~~~~kgiLfVGRLa~EKGld~LLeAla~L~~  573 (794)
T PLN02501        502 VLRLSAATQDLPKSVICNVHGVNP--------KFLKIGEKVAEERELGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKN  573 (794)
T ss_pred             EEcCCHHHHHhcccceeecccccc--------cccCCcchhHHHHhcCCccccCceEEEEcccccCCHHHHHHHHHHHHh
Confidence            788876544332233322222111        11112111 1234566643  335565544557999999999999988


Q ss_pred             hcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceee
Q 002729          739 RVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMIT  817 (887)
Q Consensus       739 ~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt  817 (887)
                      ..|+.+|+|+|.||. ++.+++.+.+.|+   +|.|+|..+..  ...|+.+|||+-|+.+.| |++++|||+||+|||+
T Consensus       574 ~~pnvrLvIVGDGP~-reeLe~la~eLgL---~V~FLG~~dd~--~~lyasaDVFVlPS~sEgFGlVlLEAMA~GlPVVA  647 (794)
T PLN02501        574 ELDGFNLDVFGNGED-AHEVQRAAKRLDL---NLNFLKGRDHA--DDSLHGYKVFINPSISDVLCTATAEALAMGKFVVC  647 (794)
T ss_pred             hCCCeEEEEEcCCcc-HHHHHHHHHHcCC---EEEecCCCCCH--HHHHHhCCEEEECCCcccchHHHHHHHHcCCCEEE
Confidence            899999999999987 7789999998888   38999876544  256889999999988888 9999999999999998


Q ss_pred             ecccchhhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHH
Q 002729          818 LPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQ  864 (887)
Q Consensus       818 ~~g~~~~~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l~~d~~~~~  864 (887)
                      -..+.... +     . -|-+. ++..|.+++++.+.++..|++.+.
T Consensus       648 Td~pG~e~-V-----~-~g~nG-ll~~D~EafAeAI~~LLsd~~~rl  686 (794)
T PLN02501        648 ADHPSNEF-F-----R-SFPNC-LTYKTSEDFVAKVKEALANEPQPL  686 (794)
T ss_pred             ecCCCCce-E-----e-ecCCe-EecCCHHHHHHHHHHHHhCchhhh
Confidence            76543211 1     1 13344 667899999999999999877543

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.49  E-value=4.4e-12  Score=144.83  Aligned_cols=267  Identities=12%  Similarity=0.030  Sum_probs=157.6

Q ss_pred             hCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH------
Q 002729           28 RNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFA------  101 (887)
Q Consensus        28 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------  101 (887)
                      .+|.+..++..++..+...+++++|++.++..++.+|+....++.+|.++.+.+++.++...  .++...+.+.      
T Consensus        26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve  103 (906)
T PRK14720         26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVE  103 (906)
T ss_pred             CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHH
Confidence            34677888999999888999999999999999999999999999999988888887776655  4444433322      


Q ss_pred             -------------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh
Q 002729          102 -------------DAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF  168 (887)
Q Consensus       102 -------------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  168 (887)
                                   .+++.+|.||-++|+.++|...|+++++.+|+++.+++++|..|... +.++|++++.+++..    
T Consensus       104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~----  178 (906)
T PRK14720        104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR----  178 (906)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH----
Confidence                         45555555555555555555555555555555555555555555555 555555555554432    


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHhhHHHHHHH
Q 002729          169 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYE  248 (887)
Q Consensus       169 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~la~~~~~  248 (887)
                                +...+++.++.+++.+.+..+|++.+.+..+-......-....+             ...+.-+-..|..
T Consensus       179 ----------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~-------------~~~~~~l~~~y~~  235 (906)
T PRK14720        179 ----------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRL-------------VGLLEDLYEPYKA  235 (906)
T ss_pred             ----------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchh-------------HHHHHHHHHHHhh
Confidence                      33344555555555555555555444333322222111111111             2233344456667


Q ss_pred             cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHH
Q 002729          249 RGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYK  328 (887)
Q Consensus       249 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  328 (887)
                      .++|++++.+++.+++.+|.+..+...++.+|.  +.|.. ...+++.+++.           .+--...++..++.-|+
T Consensus       236 ~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s-----------~l~~~~~~~~~~i~~fe  301 (906)
T PRK14720        236 LEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMS-----------DIGNNRKPVKDCIADFE  301 (906)
T ss_pred             hhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHHHHh-----------ccccCCccHHHHHHHHH
Confidence            777788888888888887777777777777776  23322 33344433321           11111234566677777


Q ss_pred             HHHhccCCCc
Q 002729          329 ATLAVTTGLS  338 (887)
Q Consensus       329 ~~~~~~~~~~  338 (887)
                      +.+...+.+-
T Consensus       302 k~i~f~~G~y  311 (906)
T PRK14720        302 KNIVFDTGNF  311 (906)
T ss_pred             HHeeecCCCE
Confidence            7776665543

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.48  E-value=2.4e-10  Score=140.84  Aligned_cols=371  Identities=17%  Similarity=0.070  Sum_probs=260.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHH
Q 002729           69 CYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALA-LNPLLVDAHSNLGNLMKA  147 (887)
Q Consensus        69 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~~~la~~~~~  147 (887)
                      .+...+..+...|++.+|...+..+-.. +.-.......+......|++..+...++.+-. ....++......+.++..
T Consensus       343 lh~raa~~~~~~g~~~~Al~~a~~a~d~-~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~  421 (903)
T PRK04841        343 LHRAAAEAWLAQGFPSEAIHHALAAGDA-QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQS  421 (903)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHCCCH-HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHH
Confidence            3445566677788888877766554211 11123344456666777888877776655411 112234455667788888


Q ss_pred             cCChHHHHHHHHHHHhhCCC---------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHH
Q 002729          148 QGLVQEAYSCYLEALRIQPT---------FAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFP-----DAYLNLGNVY  213 (887)
Q Consensus       148 ~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~-----~~~~~l~~~~  213 (887)
                      .|++++|...+..+....+.         .......++.++...|++++|...+++++...+...     .+...++.++
T Consensus       422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~  501 (903)
T PRK04841        422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH  501 (903)
T ss_pred             CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence            99999999999887654221         123445567788889999999999999987544322     2456788888


Q ss_pred             HHcCChHHHHHHHHHHHhhCCC-------hhHHhhHHHHHHHcCChHHHHHHHHHHHhcC--------CCcHHHHHHHHH
Q 002729          214 KALGMPQEAIMCYQRAVQTRPN-------AIAFGNLASTYYERGQADMAILYYKQAIGCD--------PRFLEAYNNLGN  278 (887)
Q Consensus       214 ~~~g~~~~A~~~~~~~~~~~p~-------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~la~  278 (887)
                      ...|++++|...+++++.....       ...+..++.++...|++++|...+++++...        +.....+..++.
T Consensus       502 ~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  581 (903)
T PRK04841        502 HCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQ  581 (903)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence            9999999999999998865322       3456778889999999999999999887531        112234567788


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCC-----ChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCc--hhH-h----hHHH
Q 002729          279 ALKDVGRVDEAIQCYNQCLSLQPS-----HPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLS--APF-N----NLAV  346 (887)
Q Consensus       279 ~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~-~----~la~  346 (887)
                      ++...|++++|...+.+++.....     ....+..++.++...|++++|...+.++........  ..+ .    ....
T Consensus       582 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~  661 (903)
T PRK04841        582 LLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLI  661 (903)
T ss_pred             HHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHH
Confidence            889999999999999998775321     234566688899999999999999998876533211  111 1    1224


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCcHHHHHHHHHHH
Q 002729          347 IYKQQGNYADAISCYNEVLRIDPLAA----DGLVNRGNTYKEIGRVTDAIQDYIRAITIR------PTMAEAHANLASAY  416 (887)
Q Consensus       347 ~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~  416 (887)
                      .+...|+.++|..++.......+...    ..+..++.++...|++++|...+++++...      .....++..+|.++
T Consensus       662 ~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~  741 (903)
T PRK04841        662 YWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLY  741 (903)
T ss_pred             HHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence            45567899999999877655332222    125678899999999999999999998752      22345788899999


Q ss_pred             HhCCCHHHHHHHHHHHHHcCCCCh
Q 002729          417 KDSGHVEAAIKSYKQALLLRPDFP  440 (887)
Q Consensus       417 ~~~g~~~~A~~~~~~al~~~p~~~  440 (887)
                      ...|+.++|...+.+++++.....
T Consensus       742 ~~~G~~~~A~~~L~~Al~la~~~g  765 (903)
T PRK04841        742 WQQGRKSEAQRVLLEALKLANRTG  765 (903)
T ss_pred             HHcCCHHHHHHHHHHHHHHhCccc
Confidence            999999999999999999865543

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.47  E-value=1.3e-12  Score=119.98  Aligned_cols=124  Identities=14%  Similarity=0.098  Sum_probs=90.0

Q ss_pred             HHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002729           20 EHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPN   99 (887)
Q Consensus        20 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~   99 (887)
                      .+|+++++.+|++   +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|+++++.+|+
T Consensus        14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~   90 (144)
T PRK15359         14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS   90 (144)
T ss_pred             HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            4567777766643   4556777777777777777777777777777777777777777777777777777777777777


Q ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002729          100 FADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMK  146 (887)
Q Consensus       100 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~  146 (887)
                      ++.+++.+|.++...|++++|+..|+++++..|+++..+..++.+..
T Consensus        91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~  137 (144)
T PRK15359         91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI  137 (144)
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            77777777777777777777777777777777777777766665544

>PRK10307 putative glycosyl transferase; Provisional

Probab=99.47  E-value=9.2e-13  Score=146.27  Aligned_cols=185  Identities=18%  Similarity=0.202  Sum_probs=138.9

Q ss_pred             ccceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEecC
Q 002729          673 SEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRF  750 (887)
Q Consensus       673 ~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~  750 (887)
                      .+++..+|++.....+..    ...+.....|..+|++++.+++++.+++  .|..+.+++++.++ +..|+.+|+|+|.
T Consensus       193 ~~~i~vi~ngvd~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~kg~~~li~a~~~l-~~~~~~~l~ivG~  267 (412)
T PRK10307        193 AEKVIFFPNWSEVARFQP----VADADVDALRAQLGLPDGKKIVLYSGNIGEKQGLELVIDAARRL-RDRPDLIFVICGQ  267 (412)
T ss_pred             cccEEEECCCcCHhhcCC----CCccchHHHHHHcCCCCCCEEEEEcCccccccCHHHHHHHHHHh-ccCCCeEEEEECC
Confidence            467888888654322110    0011112356778999888888888876  58899999999766 5578899999998


Q ss_pred             ChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCC-----chhHHHHHHhCCceeeeccc--ch
Q 002729          751 PAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-----HTTGTDILWAGLPMITLPLE--KM  823 (887)
Q Consensus       751 ~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g-----~~t~~eal~~gvPvvt~~g~--~~  823 (887)
                      ++. .+.+++.+++.|++  +|.|+|.++.++...+|+.+|+++-|+-.++     ++..+|||+||+|||+-...  .+
T Consensus       268 g~~-~~~l~~~~~~~~l~--~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~~  344 (412)
T PRK10307        268 GGG-KARLEKMAQCRGLP--NVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTEL  344 (412)
T ss_pred             Chh-HHHHHHHHHHcCCC--ceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCchH
Confidence            876 67888899999983  7999999999999999999999999866554     23468999999999986422  12


Q ss_pred             hhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 002729          824 ATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVR  874 (887)
Q Consensus       824 ~~r~~~~~l~~~g~~~~~~~--~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~~  874 (887)
                      ..     ++.  + ++ +++  .|.+++.+...++..|++.+.+++++.++..
T Consensus       345 ~~-----~i~--~-~G-~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~  388 (412)
T PRK10307        345 GQ-----LVE--G-IG-VCVEPESVEALVAAIAALARQALLRPKLGTVAREYA  388 (412)
T ss_pred             HH-----HHh--C-Cc-EEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            22     232  3 34 443  6899999999999999999999999888754

>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional

Probab=99.47  E-value=3.1e-12  Score=139.52  Aligned_cols=161  Identities=14%  Similarity=0.134  Sum_probs=125.2

Q ss_pred             CCCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEecCChhh--------HHHHHHHHHHcCCCCCcE
Q 002729          703 KRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAG--------EMRLRAYAVAQGVQPDQI  772 (887)
Q Consensus       703 ~r~~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~--------~~~l~~~~~~~g~~~~r~  772 (887)
                      .|..+|++.+.+++++.+++  .|..+.++++|.++.++.|+.+|+|+|.++..        ...+++.+...|   ++|
T Consensus       183 ~~~~~~~~~~~~~il~~Grl~~~Kg~~~Li~A~~~l~~~~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~---~~v  259 (380)
T PRK15484        183 LRQQLNISPDETVLLYAGRISPDKGILLLMQAFEKLATAHSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIG---DRC  259 (380)
T ss_pred             HHHHhCCCCCCeEEEEeccCccccCHHHHHHHHHHHHHhCCCeEEEEEeCCccccccchhHHHHHHHHHHHhcC---CcE
Confidence            36678888777777777775  58999999999999999999999999976431        124444444444   579


Q ss_pred             EEcCCCCcHHHHHhccCCcEEecCCCC-CC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCcc-c--cCCHH
Q 002729          773 IFTDVAMKQEHIRRSSLADLFLDTPLC-NA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEM-I--VNSMK  847 (887)
Q Consensus       773 ~~~~~~~~~~~~~~~~~~d~~ld~~~~-~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~-~--~~~~~  847 (887)
                      +|.|.++.++...+|+.+|+++-|+.+ +| |++.+|||+||+|||+.....+.+-+..      |.++ + +  ..|.+
T Consensus       260 ~~~G~~~~~~l~~~~~~aDv~v~pS~~~E~f~~~~lEAma~G~PVI~s~~gg~~Eiv~~------~~~G-~~l~~~~d~~  332 (380)
T PRK15484        260 IMLGGQPPEKMHNYYPLADLVVVPSQVEEAFCMVAVEAMAAGKPVLASTKGGITEFVLE------GITG-YHLAEPMTSD  332 (380)
T ss_pred             EEeCCCCHHHHHHHHHhCCEEEeCCCCccccccHHHHHHHcCCCEEEeCCCCcHhhccc------CCce-EEEeCCCCHH
Confidence            999999999999999999999999764 55 8999999999999998776555553322      5555 4 4  25899


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 002729          848 EYEERAVSLALDRQKLQALTNKLKSVR  874 (887)
Q Consensus       848 ~y~~~a~~l~~d~~~~~~~~~~~~~~~  874 (887)
                      ++.+...++.+|++. .++.++.|+..
T Consensus       333 ~la~~I~~ll~d~~~-~~~~~~ar~~~  358 (380)
T PRK15484        333 SIISDINRTLADPEL-TQIAEQAKDFV  358 (380)
T ss_pred             HHHHHHHHHHcCHHH-HHHHHHHHHHH
Confidence            999999999999985 66777776543

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.46  E-value=3.3e-12  Score=123.81  Aligned_cols=125  Identities=15%  Similarity=0.135  Sum_probs=109.2

Q ss_pred             cCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHcCC--HHHHHH
Q 002729          317 WNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTY-KEIGR--VTDAIQ  393 (887)
Q Consensus       317 ~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~~~g~--~~~A~~  393 (887)
                      .++.++++..+++++..+|++...|..+|.+|...|++++|+..|+++++++|+++.++..+|.++ ...|+  +++|.+
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            566678888888888888888888888999999999999999999999999999999999999875 67777  589999


Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChH
Q 002729          394 DYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE  441 (887)
Q Consensus       394 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  441 (887)
                      .++++++.+|++..+++.+|..+.+.|++++|+..|+++++..|.+..
T Consensus       132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~  179 (198)
T PRK10370        132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN  179 (198)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            999999999999999999999999999999999999999998887653

>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli

Probab=99.46  E-value=1.5e-12  Score=142.42  Aligned_cols=312  Identities=11%  Similarity=0.125  Sum_probs=187.6

Q ss_pred             eeeecCCCCCChhHHhhhHHhhcCCCCCcEEEEEecCCCCChHHHHHHHhhcCceEECCC------CCHHHHHHHHHhCC
Q 002729          539 VGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSA------MSSDMIAKLINEDK  612 (887)
Q Consensus       539 iGyvs~d~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~i~~~~  612 (887)
                      |=++++.+...=+...+..+.+.+.+.++||.+++............... . ....+..      .....+.+.|+..+
T Consensus         2 il~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (360)
T cd04951           2 ILYVITGLGLGGAEKQVVDLADQFVAKGHQVAIISLTGESEVKPPIDATI-I-LNLNMSKNPLSFLLALWKLRKILRQFK   79 (360)
T ss_pred             eEEEecCCCCCCHHHHHHHHHHhcccCCceEEEEEEeCCCCccchhhccc-e-EEecccccchhhHHHHHHHHHHHHhcC
Confidence            45666665433333567778888888888888876543221111111000 0 0111110      11245677888999


Q ss_pred             CeEEEecCCcCCCCchhhhh--cCCCceEEeccccCCCCCCCcc----cEEEecCccCCCC--c-----C-CCCccceee
Q 002729          613 IQILINLNGYTKGARNEIFA--MQPAPIQVSYMGFPGTTGASYI----DYLVTDEFVSPLR--Y-----A-HIYSEKLVH  678 (887)
Q Consensus       613 ~dil~~~~~~~~~~~~~~~~--~r~apvq~~~~g~~~t~g~~~~----d~~~~d~~~~p~~--~-----~-~~~~e~~~~  678 (887)
                      +||++-...|+.-. ..++.  .+..|+.++.-+..........    -..+++.......  .     . ....+++..
T Consensus        80 pdiv~~~~~~~~~~-~~l~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  158 (360)
T cd04951          80 PDVVHAHMFHANIF-ARLLRLFLPSPPLICTAHSKNEGGRLRMLAYRLTDFLSDLTTNVSKEALDYFIASKAFNANKSFV  158 (360)
T ss_pred             CCEEEEcccchHHH-HHHHHhhCCCCcEEEEeeccCchhHHHHHHHHHHhhccCceEEEcHHHHHHHHhccCCCcccEEE
Confidence            99997544332100 01111  1234555443222211111000    0011111111111  0     1 123478888


Q ss_pred             cCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEecCChhhHH
Q 002729          679 VPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEM  756 (887)
Q Consensus       679 lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~  756 (887)
                      +|++.-+..+...     .......|..++++++.+++++.+++  .|..+.+++++.++.+..|+.+|+|+|.++. .+
T Consensus       159 i~ng~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~g~~~~~kg~~~li~a~~~l~~~~~~~~l~i~G~g~~-~~  232 (360)
T cd04951         159 VYNGIDTDRFRKD-----PARRLKIRNALGVKNDTFVILAVGRLVEAKDYPNLLKAFAKLLSDYLDIKLLIAGDGPL-RA  232 (360)
T ss_pred             EccccchhhcCcc-----hHHHHHHHHHcCcCCCCEEEEEEeeCchhcCcHHHHHHHHHHHhhCCCeEEEEEcCCCc-HH
Confidence            8876432211100     00111246677888888877777764  6999999999999999899999999998776 56


Q ss_pred             HHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhc
Q 002729          757 RLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLAT  835 (887)
Q Consensus       757 ~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~  835 (887)
                      .+++.+...|+ .++|.|.|..  .+...+|..+|+++-|..++| |.+++|||++|+|||+.....+.+-+.     ..
T Consensus       233 ~~~~~~~~~~~-~~~v~~~g~~--~~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~-----~~  304 (360)
T cd04951         233 TLERLIKALGL-SNRVKLLGLR--DDIAAYYNAADLFVLSSAWEGFGLVVAEAMACELPVVATDAGGVREVVG-----DS  304 (360)
T ss_pred             HHHHHHHhcCC-CCcEEEeccc--ccHHHHHHhhceEEecccccCCChHHHHHHHcCCCEEEecCCChhhEec-----CC
Confidence            78888888898 5899999964  466778999999999977777 999999999999999876655554332     11


Q ss_pred             CCCCccccCCHHHHHHHHHHHh-cCHHHHHHHHHH
Q 002729          836 GLGEEMIVNSMKEYEERAVSLA-LDRQKLQALTNK  869 (887)
Q Consensus       836 g~~~~~~~~~~~~y~~~a~~l~-~d~~~~~~~~~~  869 (887)
                      |. - +...|.+++++...++. .+++.+..++..
T Consensus       305 g~-~-~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~  337 (360)
T cd04951         305 GL-I-VPISDPEALANKIDEILKMSGEERDIIGAR  337 (360)
T ss_pred             ce-E-eCCCCHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            22 1 23488999999999998 566666666655

In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have

>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases

Probab=99.46  E-value=1.7e-12  Score=142.12  Aligned_cols=314  Identities=14%  Similarity=0.105  Sum_probs=186.3

Q ss_pred             eeeeecCCCCCCh--hHHhhhHHhhcCCCCCcEEEEEecCCCCChHHHH------HHHhhcCceEECCCCCHHHHHHHHH
Q 002729          538 RVGYVSSDFGNHP--LSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQ------RTQSEAEHFVDVSAMSSDMIAKLIN  609 (887)
Q Consensus       538 riGyvs~d~~~h~--~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~  609 (887)
                      ||.+|+..|....  +...+..+.+.+-..+.+|.++............      .+...........-.....+.+.++
T Consensus         1 kIl~i~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (364)
T cd03814           1 RIAIVTDTFLPQVNGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEGPARVVPVPSVPLPGYPEIRLALPPRRRVRRLLD   80 (364)
T ss_pred             CeEEEecccCccccceehHHHHHHHHHHHCCCEEEEEeCCchhhccCCCCceeecccccCcccceEecccchhhHHHHHH
Confidence            5667776663321  2245566666666667888888765322110000      0000000111111123456788888


Q ss_pred             hCCCeEEEecCCcCCCCchhhh-hcCCCceEEeccccCCCC----C---------------CCcccEEEecCccCCCCcC
Q 002729          610 EDKIQILINLNGYTKGARNEIF-AMQPAPIQVSYMGFPGTT----G---------------ASYIDYLVTDEFVSPLRYA  669 (887)
Q Consensus       610 ~~~~dil~~~~~~~~~~~~~~~-~~r~apvq~~~~g~~~t~----g---------------~~~~d~~~~d~~~~p~~~~  669 (887)
                      ..++||++-.+....+.....+ ..+..|+-+.+.+.....    +               ....|.+++..-.......
T Consensus        81 ~~~pdii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~~~~~~~~  160 (364)
T cd03814          81 AFAPDVVHIATPGPLGLAALRAARRLGIPVVTSYHTDFPEYLRYYGLGPLSWLAWAYLRWFHNRADRVLVPSPSLADELR  160 (364)
T ss_pred             hcCCCEEEEeccchhhHHHHHHHHHcCCCEEEEEecChHHHhhhcccchHhHhhHHHHHHHHHhCCEEEeCCHHHHHHHh
Confidence            9999999643322222111222 224567655432211100    0               0123444331111111112


Q ss_pred             CCCccceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEE
Q 002729          670 HIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWL  747 (887)
Q Consensus       670 ~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~  747 (887)
                      .....++..+|++.....+..      .......+..++ +.+.++++..+++  .|..+.+++++.++... |+.+|++
T Consensus       161 ~~~~~~~~~~~~g~~~~~~~~------~~~~~~~~~~~~-~~~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~-~~~~l~i  232 (364)
T cd03814         161 ARGFRRVRLWPRGVDTELFHP------RRRDEALRARLG-PPDRPVLLYVGRLAPEKNLEALLDADLPLRRR-PPVRLVI  232 (364)
T ss_pred             ccCCCceeecCCCccccccCc------ccccHHHHHHhC-CCCCeEEEEEeccccccCHHHHHHHHHHhhhc-CCceEEE
Confidence            233345555655432211110      001111233444 4455666666665  68899999999999888 9999999


Q ss_pred             ecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccchhhh
Q 002729          748 LRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATR  826 (887)
Q Consensus       748 ~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r  826 (887)
                      +|.++. ...++      +. .++|.|.|..+.++....|..+|++|.|....| |+|++|||++|+|||+.+...+.+.
T Consensus       233 ~G~~~~-~~~~~------~~-~~~v~~~g~~~~~~~~~~~~~~d~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~~~~~  304 (364)
T cd03814         233 VGDGPA-RARLE------AR-YPNVHFLGFLDGEELAAAYASADVFVFPSRTETFGLVVLEAMASGLPVVAPDAGGPADI  304 (364)
T ss_pred             EeCCch-HHHHh------cc-CCcEEEEeccCHHHHHHHHHhCCEEEECcccccCCcHHHHHHHcCCCEEEcCCCCchhh
Confidence            997765 33333      33 578999999999999999999999999976666 9999999999999999888777665


Q ss_pred             hHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 002729          827 VAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVR  874 (887)
Q Consensus       827 ~~~~~l~~~g~~~~~~~--~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~~  874 (887)
                      +..      +-.+ +++  .+.+++++....+..|++.+.++....++..
T Consensus       305 i~~------~~~g-~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~  347 (364)
T cd03814         305 VTD------GENG-LLVEPGDAEAFAAALAALLADPELRRRMAARARAEA  347 (364)
T ss_pred             hcC------Ccce-EEcCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence            432      3344 444  5677899999999999999999998887754

Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.46  E-value=3.5e-10  Score=139.37  Aligned_cols=370  Identities=15%  Similarity=0.037  Sum_probs=266.3

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHH
Q 002729           34 DNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIE-LRPNFADAWSNLASAYM  112 (887)
Q Consensus        34 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~  112 (887)
                      ..+...+..+...|++.+|+..+..+-.. +.-.......+......|++..+...+..+-. ....++......+.++.
T Consensus       342 ~lh~raa~~~~~~g~~~~Al~~a~~a~d~-~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~  420 (903)
T PRK04841        342 ELHRAAAEAWLAQGFPSEAIHHALAAGDA-QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQ  420 (903)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHCCCH-HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHH
Confidence            34455566777888888888766544211 11133445566777788888887777655411 11223445566778888


Q ss_pred             HcCChHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-----HHHHHHHHHH
Q 002729          113 RKGRLNEAAQCCRQALALNPL---------LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF-----AIAWSNLAGL  178 (887)
Q Consensus       113 ~~g~~~~A~~~~~~~l~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~  178 (887)
                      ..|++++|...+..+....+.         .......++.++...|++++|...+++++...+..     ..+...++.+
T Consensus       421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~  500 (903)
T PRK04841        421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV  500 (903)
T ss_pred             HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence            899999999999888654221         12344567788889999999999999998754432     2356778888


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-----C----hhHHhhHH
Q 002729          179 FMESGDLNRALQYYKEAVKLKPTF------PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-----N----AIAFGNLA  243 (887)
Q Consensus       179 ~~~~g~~~~A~~~~~~~l~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-----~----~~~~~~la  243 (887)
                      +...|++++|...+++++......      ...+..++.++...|++++|...+++++....     .    ...+..++
T Consensus       501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  580 (903)
T PRK04841        501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA  580 (903)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence            999999999999999998753321      23567789999999999999999999887521     1    23455778


Q ss_pred             HHHHHcCChHHHHHHHHHHHhcCC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hHHHH----hHH
Q 002729          244 STYYERGQADMAILYYKQAIGCDP-----RFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH---PQALT----NLG  311 (887)
Q Consensus       244 ~~~~~~g~~~~A~~~~~~~l~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~----~l~  311 (887)
                      .++...|++++|...+.+++....     .....+..++.++...|++++|...+.++.......   .....    ...
T Consensus       581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~  660 (903)
T PRK04841        581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL  660 (903)
T ss_pred             HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence            889999999999999999875422     124456678899999999999999999987753321   11111    122


Q ss_pred             HHHHHcCChhHHHHHHHHHHhccCCCch----hHhhHHHHHHHcCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHH
Q 002729          312 NIYMEWNMLPAAASYYKATLAVTTGLSA----PFNNLAVIYKQQGNYADAISCYNEVLRIDP------LAADGLVNRGNT  381 (887)
Q Consensus       312 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~  381 (887)
                      ..+...|+.+.|...+.......+....    .+..++.++...|++++|...+++++....      ....++..+|.+
T Consensus       661 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a  740 (903)
T PRK04841        661 IYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQL  740 (903)
T ss_pred             HHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence            4455688999999998776553322221    145788999999999999999999987621      234578889999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCC
Q 002729          382 YKEIGRVTDAIQDYIRAITIRPT  404 (887)
Q Consensus       382 ~~~~g~~~~A~~~~~~al~~~p~  404 (887)
                      +...|+.++|...+.++++....
T Consensus       741 ~~~~G~~~~A~~~L~~Al~la~~  763 (903)
T PRK04841        741 YWQQGRKSEAQRVLLEALKLANR  763 (903)
T ss_pred             HHHcCCHHHHHHHHHHHHHHhCc
Confidence            99999999999999999988654

>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases

Probab=99.45  E-value=5.9e-13  Score=145.83  Aligned_cols=309  Identities=12%  Similarity=0.054  Sum_probs=191.8

Q ss_pred             eeeeecCCCCC---ChhHHhhhHHhhcCCCCCcEEEEEecCCCCChHHHHHHHhhc------C--ceEECCCCCHHHHHH
Q 002729          538 RVGYVSSDFGN---HPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEA------E--HFVDVSAMSSDMIAK  606 (887)
Q Consensus       538 riGyvs~d~~~---h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~~~~~~  606 (887)
                      ||.+++..+..   .=++.++..+.+.+.+...+++++..................      .  .+... .........
T Consensus         1 ~ili~~~~~~~~~~gG~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   79 (365)
T cd03809           1 RILIDARFLASRRPTGIGRYARELLRALLKLDPEEVLLLLPGAPGLLLLPLRAALRLLLRLPRRLLWGLL-FLLRAGDRL   79 (365)
T ss_pred             CEEEechhhhcCCCCcHHHHHHHHHHHHHhcCCceEEEEecCccccccccchhccccccccccccccchh-hHHHHHHHH
Confidence            57788887766   234478888888888766666555544322211010000000      0  11111 111334455


Q ss_pred             HHHhCCCeEEEecCCcCCCCchhhhhcCCCceEEecc-----ccCCCCCC--------------CcccEEEecCccCCCC
Q 002729          607 LINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYM-----GFPGTTGA--------------SYIDYLVTDEFVSPLR  667 (887)
Q Consensus       607 ~i~~~~~dil~~~~~~~~~~~~~~~~~r~apvq~~~~-----g~~~t~g~--------------~~~d~~~~d~~~~p~~  667 (887)
                      .+...++||++-.+...     ..+.....|+.++.-     .+|...+.              ...|.+++     +..
T Consensus        80 ~~~~~~~Dii~~~~~~~-----~~~~~~~~~~i~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~-----~s~  149 (365)
T cd03809          80 LLLLLGLDLLHSPHNTA-----PLLRLRGVPVVVTIHDLIPLRFPEYFSPGFRRYFRRLLRRALRRADAIIT-----VSE  149 (365)
T ss_pred             HhhhcCCCeeeeccccc-----CcccCCCCCEEEEeccchhhhCcccCCHHHHHHHHHHHHHHHHHcCEEEE-----ccH
Confidence            66668899996555443     222344567766532     23332221              12344443     322


Q ss_pred             c-----CCCC---ccceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHH
Q 002729          668 Y-----AHIY---SEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNIL  737 (887)
Q Consensus       668 ~-----~~~~---~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il  737 (887)
                      .     ...+   .+++..+|++.......        +.....+...+.+.+.++++.++++  .|..+.+++++..+.
T Consensus       150 ~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~~l~~~~~~~  221 (365)
T cd03809         150 ATKRDLLRYLGVPPDKIVVIPLGVDPRFRP--------PPAEAEVLRALYLLPRPYFLYVGTIEPRKNLERLLEAFARLP  221 (365)
T ss_pred             HHHHHHHHHhCcCHHHEEeeccccCccccC--------CCchHHHHHHhcCCCCCeEEEeCCCccccCHHHHHHHHHHHH
Confidence            1     1122   46677777654322111        0000001112334445566666665  589999999999999


Q ss_pred             hhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCcee
Q 002729          738 RRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMI  816 (887)
Q Consensus       738 ~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvv  816 (887)
                      ...|+.+|.++|.++..........++.+. .++|.|.|.++..+....+..+|+++-|.-+.| |.+++|||++|+|||
T Consensus       222 ~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~-~~~v~~~g~~~~~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~pvI  300 (365)
T cd03809         222 AKGPDPKLVIVGKRGWLNEELLARLRELGL-GDRVRFLGYVSDEELAALYRGARAFVFPSLYEGFGLPVLEAMACGTPVI  300 (365)
T ss_pred             HhcCCCCEEEecCCccccHHHHHHHHHcCC-CCeEEECCCCChhHHHHHHhhhhhhcccchhccCCCCHHHHhcCCCcEE
Confidence            998889999998765434444444467777 689999999999999999999999999966655 999999999999999


Q ss_pred             eecccchhhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 002729          817 TLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSV  873 (887)
Q Consensus       817 t~~g~~~~~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~  873 (887)
                      +...+.+.+.++.     .|. - +...|.+++++...++..|++.+..+.+..++.
T Consensus       301 ~~~~~~~~e~~~~-----~~~-~-~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~  350 (365)
T cd03809         301 ASNISSLPEVAGD-----AAL-Y-FDPLDPEALAAAIERLLEDPALREELRERGLAR  350 (365)
T ss_pred             ecCCCCccceecC-----cee-e-eCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            9777666664431     121 1 334789999999999999999999999888743

mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.

>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases

Probab=99.44  E-value=1.4e-12  Score=143.62  Aligned_cols=167  Identities=17%  Similarity=0.148  Sum_probs=123.7

Q ss_pred             CcEEEEecCC--CCCCCHHHHHHHHHHHhhcCC-----ceEEEecCChh-----hHHHHHHHHHHcCCCCCcEEEcCCCC
Q 002729          712 DKFIFACFNQ--LYKMDPEIFNTWCNILRRVPN-----SALWLLRFPAA-----GEMRLRAYAVAQGVQPDQIIFTDVAM  779 (887)
Q Consensus       712 ~~~~~~~~~~--~~k~~~~~~~~~~~il~~~p~-----~~l~~~~~~~~-----~~~~l~~~~~~~g~~~~r~~~~~~~~  779 (887)
                      +.++++++++  +.|....++++|..+.++.|+     .+|+|+|.++.     ..+.|++.+.+.|+ .++|.|.|.++
T Consensus       236 ~~~~il~vgr~~~~K~~~~li~A~~~l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l-~~~V~f~g~v~  314 (419)
T cd03806         236 RENQILSIAQFRPEKNHPLQLRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGL-EDKVEFVVNAP  314 (419)
T ss_pred             CCcEEEEEEeecCCCCHHHHHHHHHHHHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCC-CCeEEEecCCC
Confidence            3345555555  569999999999999988765     89999987532     24578888999999 68999999999


Q ss_pred             cHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeec-ccchhhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHh
Q 002729          780 KQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLP-LEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLA  857 (887)
Q Consensus       780 ~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~-g~~~~~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l~  857 (887)
                      .++...+|+.+|++|-|....| |.+.+|||++|+|||+.. |....+-+...   .-|-++ +++.|++++.+.+.++.
T Consensus       315 ~~~l~~~l~~adv~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~~~iv~~~---~~g~~G-~l~~d~~~la~ai~~ll  390 (419)
T cd03806         315 FEELLEELSTASIGLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPLLDIVVPW---DGGPTG-FLASTAEEYAEAIEKIL  390 (419)
T ss_pred             HHHHHHHHHhCeEEEECCccCCcccHHHHHHHcCCcEEEEcCCCCchheeecc---CCCCce-EEeCCHHHHHHHHHHHH
Confidence            9999999999999999977677 999999999999999765 23222222100   015566 77889999999999999


Q ss_pred             cCHH-HHHHHHHHHHhhcccCCCCCcCCcc
Q 002729          858 LDRQ-KLQALTNKLKSVRLTCPLFDTARWV  886 (887)
Q Consensus       858 ~d~~-~~~~~~~~~~~~~~~~~l~d~~~~~  886 (887)
                      +|++ .++.+++.-+. .  .--|+..+|.
T Consensus       391 ~~~~~~~~~~~~~~~~-~--~~~fs~~~f~  417 (419)
T cd03806         391 SLSEEERLRIRRAARS-S--VKRFSDEEFE  417 (419)
T ss_pred             hCCHHHHHHHHHHHHH-H--HHhhCHHHhc
Confidence            8654 44444443333 2  2346666664

ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.44  E-value=1.4e-11  Score=117.43  Aligned_cols=176  Identities=19%  Similarity=0.161  Sum_probs=117.2

Q ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcc
Q 002729          255 AILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT  334 (887)
Q Consensus       255 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  334 (887)
                      +...+-+....+|++..+ ..++..+...|+-+.+..+..+.....|.+......+|......|++.+|+..++++....
T Consensus        52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~  130 (257)
T COG5010          52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA  130 (257)
T ss_pred             HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence            444444445566666666 6666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 002729          335 TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLAS  414 (887)
Q Consensus       335 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  414 (887)
                      |++..+|+.+|.+|.+.|++++|...|.+++++.|.++.+..++|..+.-.|+++.|..++..+....+.+..+..+|+.
T Consensus       131 p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl  210 (257)
T COG5010         131 PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLAL  210 (257)
T ss_pred             CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHhCCCHHHHHHHHHH
Q 002729          415 AYKDSGHVEAAIKSYKQ  431 (887)
Q Consensus       415 ~~~~~g~~~~A~~~~~~  431 (887)
                      +....|++.+|..+-.+
T Consensus       211 ~~~~~g~~~~A~~i~~~  227 (257)
T COG5010         211 VVGLQGDFREAEDIAVQ  227 (257)
T ss_pred             HHhhcCChHHHHhhccc
Confidence            66666666666665544

>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain

Probab=99.44  E-value=1.6e-12  Score=144.78  Aligned_cols=160  Identities=11%  Similarity=0.068  Sum_probs=120.6

Q ss_pred             CCCCCCCcEEEEecCCC--CCCCHHHHHHHHHH--HhhcCCceEEEecCChhh----------HHHHHHHHHHcCCCCCc
Q 002729          706 DYGLPEDKFIFACFNQL--YKMDPEIFNTWCNI--LRRVPNSALWLLRFPAAG----------EMRLRAYAVAQGVQPDQ  771 (887)
Q Consensus       706 ~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~i--l~~~p~~~l~~~~~~~~~----------~~~l~~~~~~~g~~~~r  771 (887)
                      .++++++.+++++++|+  .|..+.++++++++  ++..|+.. +++|.++..          .+.+...+.+.|+ .++
T Consensus       241 ~~~~~~~~~~i~~vGrl~~~Kg~~~li~A~~~l~~~~~~~~l~-li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l-~~~  318 (439)
T TIGR02472       241 PFLKDPEKPPILAISRPDRRKNIPSLVEAYGRSPKLQEMANLV-LVLGCRDDIRKMESQQREVLQKVLLLIDRYDL-YGK  318 (439)
T ss_pred             hhccccCCcEEEEEcCCcccCCHHHHHHHHHhChhhhhhccEE-EEeCCccccccccHHHHHHHHHHHHHHHHcCC-Cce
Confidence            35566666777777776  59999999999864  23334433 345655431          1234556778899 689


Q ss_pred             EEEcCCCCcHHHHHhccCC----cEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCcccc--C
Q 002729          772 IIFTDVAMKQEHIRRSSLA----DLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--N  844 (887)
Q Consensus       772 ~~~~~~~~~~~~~~~~~~~----d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~--~  844 (887)
                      |+|+|.++.++...+|+.+    |+|+-|+.++| |++++|||++|+|||+-......+-+..      |.++ +++  .
T Consensus       319 V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg~~eiv~~------~~~G-~lv~~~  391 (439)
T TIGR02472       319 VAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDGGPRDIIAN------CRNG-LLVDVL  391 (439)
T ss_pred             EEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCCCcHHHhcC------CCcE-EEeCCC
Confidence            9999999888888888866    99999988888 9999999999999997765555543321      4555 554  6


Q ss_pred             CHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 002729          845 SMKEYEERAVSLALDRQKLQALTNKLKSVR  874 (887)
Q Consensus       845 ~~~~y~~~a~~l~~d~~~~~~~~~~~~~~~  874 (887)
                      |++++.+...++..|++.++++.++.|+..
T Consensus       392 d~~~la~~i~~ll~~~~~~~~~~~~a~~~~  421 (439)
T TIGR02472       392 DLEAIASALEDALSDSSQWQLWSRNGIEGV  421 (439)
T ss_pred             CHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            899999999999999999999999888764

This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.

>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases

Probab=99.43  E-value=5.8e-12  Score=137.54  Aligned_cols=297  Identities=13%  Similarity=0.117  Sum_probs=183.0

Q ss_pred             HhhhHHhhcCCCCCcEEEEEecCCCCChHHHHHHHhhc----CceEECC--CCCHHHHH-HHHHhCCCeEEEecCCcCCC
Q 002729          553 HLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEA----EHFVDVS--AMSSDMIA-KLINEDKIQILINLNGYTKG  625 (887)
Q Consensus       553 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~--~~~~~~~~-~~i~~~~~dil~~~~~~~~~  625 (887)
                      .++..+.+.+.+.+++|.++...+..... ........    ..+....  .....-.. -.+...++||++--.....+
T Consensus        18 ~~~~~l~~~L~~~g~~v~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~   96 (357)
T cd03795          18 QVIRDLAEGLAARGIEVAVLCASPEPKGR-DEERNGHRVIRAPSLLNVASTPFSPSFFKQLKKLAKKADVIHLHFPNPLA   96 (357)
T ss_pred             HHHHHHHHHHHhCCCceEEEecCCCCcch-hhhccCceEEEeecccccccccccHHHHHHHHhcCCCCCEEEEecCcchH
Confidence            56667778888888999888876543321 11110000    0011111  11111111 11568899999754433322


Q ss_pred             CchhhhhcCCCceEEeccccCCCCCC-------------CcccEEEecCccCCCCc-------CCCCccceeecCCcccc
Q 002729          626 ARNEIFAMQPAPIQVSYMGFPGTTGA-------------SYIDYLVTDEFVSPLRY-------AHIYSEKLVHVPHCYFV  685 (887)
Q Consensus       626 ~~~~~~~~r~apvq~~~~g~~~t~g~-------------~~~d~~~~d~~~~p~~~-------~~~~~e~~~~lp~~~~~  685 (887)
                      .-...+..+..|+.++|-+.......             ...|.+++     +...       ...+.+++..+|++...
T Consensus        97 ~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~-----~s~~~~~~~~~~~~~~~~~~~i~~gi~~  171 (357)
T cd03795          97 DLALLLLPRKKPVVVHWHSDIVKQKLLLKLYRPLQRRFLRRADAIVA-----TSPNYAETSPVLRRFRDKVRVIPLGLDP  171 (357)
T ss_pred             HHHHHHhccCceEEEEEcChhhccchhhhhhhHHHHHHHHhcCEEEe-----CcHHHHHHHHHhcCCccceEEecCCCCh
Confidence            22233333456777776543222111             12333333     2221       12234778888876543


Q ss_pred             CCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHH
Q 002729          686 NDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAV  763 (887)
Q Consensus       686 ~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~  763 (887)
                      ....        +...........+.+.++++++++.  .|..+.+++++.++.    +.+|+++|.++. ...+.+.+.
T Consensus       172 ~~~~--------~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~----~~~l~i~G~g~~-~~~~~~~~~  238 (357)
T cd03795         172 ARYP--------RPDALEEAIWRRAAGRPFFLFVGRLVYYKGLDVLLEAAAALP----DAPLVIVGEGPL-EAELEALAA  238 (357)
T ss_pred             hhcC--------CcchhhhHhhcCCCCCcEEEEecccccccCHHHHHHHHHhcc----CcEEEEEeCChh-HHHHHHHHH
Confidence            2211        0000000112334555666666665  688888888888764    789999998765 567777777


Q ss_pred             HcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCC---CCCchhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCc
Q 002729          764 AQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPL---CNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEE  840 (887)
Q Consensus       764 ~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~---~~g~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~  840 (887)
                      ..+. .++|.|.|.++..+...+|+.+|+++-|..   .+.|++++|||++|+|||+-.......-+.     .-|-.+ 
T Consensus       239 ~~~~-~~~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~-----~~~~~g-  311 (357)
T cd03795         239 ALGL-LDRVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVN-----LHGVTG-  311 (357)
T ss_pred             hcCC-cceEEEcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHh-----hCCCce-
Confidence            8888 589999999999999999999999998864   344999999999999999865544443221     114444 


Q ss_pred             ccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcc
Q 002729          841 MIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVRL  875 (887)
Q Consensus       841 ~~~--~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~~~  875 (887)
                      +++  .|.+++++....+.+|++.++.++.+.++...
T Consensus       312 ~~~~~~d~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~  348 (357)
T cd03795         312 LVVPPGDPAALAEAIRRLLEDPELRERLGEAARERAE  348 (357)
T ss_pred             EEeCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence            444  68999999999999999999999999887653

Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.43  E-value=5.5e-11  Score=111.92  Aligned_cols=183  Identities=19%  Similarity=0.164  Sum_probs=142.5

Q ss_pred             hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHH
Q 002729          236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM  315 (887)
Q Consensus       236 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  315 (887)
                      ...+-.+..+....|+.+.|..++++.....|++..+-...|..+...|++++|+++|+..++-+|.+..++.....+..
T Consensus        52 w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilk  131 (289)
T KOG3060|consen   52 WTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILK  131 (289)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHH
Confidence            33444555666677788888888888777778887777777888888888888888888888888888777777777777


Q ss_pred             HcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHH
Q 002729          316 EWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIG---RVTDAI  392 (887)
Q Consensus       316 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~  392 (887)
                      .+|+.-+|++.+...++.++.+.++|..++.+|...|++++|.-++++++-.+|.++..+..+|.+++-+|   ++.-|.
T Consensus       132 a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar  211 (289)
T KOG3060|consen  132 AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR  211 (289)
T ss_pred             HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            78888888888888888888888888888888888888888888888888888888888888888777665   567788


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHh
Q 002729          393 QDYIRAITIRPTMAEAHANLASAYKD  418 (887)
Q Consensus       393 ~~~~~al~~~p~~~~~~~~la~~~~~  418 (887)
                      ++|.++++++|.+..+++.+-.+...
T Consensus       212 kyy~~alkl~~~~~ral~GI~lc~~~  237 (289)
T KOG3060|consen  212 KYYERALKLNPKNLRALFGIYLCGSA  237 (289)
T ss_pred             HHHHHHHHhChHhHHHHHHHHHHHHH
Confidence            88888888888777777666555443

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.42  E-value=2.9e-11  Score=115.39  Aligned_cols=176  Identities=23%  Similarity=0.181  Sum_probs=128.0

Q ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 002729           52 CIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALN  131 (887)
Q Consensus        52 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~  131 (887)
                      +...+-+....+|++..+ ..++..+...|+-+.+..+..++...+|.+......+|....+.|++.+|+..++++....
T Consensus        52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~  130 (257)
T COG5010          52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA  130 (257)
T ss_pred             HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence            455555555667777666 7777777777777777777777777777777776667777777777777777777777777


Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002729          132 PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGN  211 (887)
Q Consensus       132 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~  211 (887)
                      |++.+++..+|.+|.+.|++++|...|.+++++.|+++.+.++++..+.-.|+++.|..++..+....+.+..+..+++.
T Consensus       131 p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl  210 (257)
T COG5010         131 PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLAL  210 (257)
T ss_pred             CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence            77777777777777777777777777777777777777777777777777777777777777777766667777777777


Q ss_pred             HHHHcCChHHHHHHHHH
Q 002729          212 VYKALGMPQEAIMCYQR  228 (887)
Q Consensus       212 ~~~~~g~~~~A~~~~~~  228 (887)
                      +....|++.+|..+..+
T Consensus       211 ~~~~~g~~~~A~~i~~~  227 (257)
T COG5010         211 VVGLQGDFREAEDIAVQ  227 (257)
T ss_pred             HHhhcCChHHHHhhccc
Confidence            77777777777666544

>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase

Probab=99.42  E-value=2.5e-12  Score=142.75  Aligned_cols=186  Identities=15%  Similarity=0.201  Sum_probs=143.6

Q ss_pred             ccceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCC--ceEEEe
Q 002729          673 SEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPN--SALWLL  748 (887)
Q Consensus       673 ~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~--~~l~~~  748 (887)
                      .+++..+|++.....+.       +......|..+|++++.+++++++++  .|..+.+++++.++++..|+  .+|+++
T Consensus       186 ~~ki~vi~ngvd~~~~~-------~~~~~~~~~~~~~~~~~~~i~~~G~l~~~K~~~~li~a~~~l~~~~~~~~~~l~iv  258 (405)
T TIGR03449       186 PDRIDVVAPGADLERFR-------PGDRATERARLGLPLDTKVVAFVGRIQPLKAPDVLLRAVAELLDRDPDRNLRVIVV  258 (405)
T ss_pred             hhhEEEECCCcCHHHcC-------CCcHHHHHHhcCCCCCCcEEEEecCCCcccCHHHHHHHHHHHHhhCCCcceEEEEE
Confidence            46777788764321111       11112356778888888888888887  58899999999999998887  788888


Q ss_pred             cCCh----hhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccch
Q 002729          749 RFPA----AGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKM  823 (887)
Q Consensus       749 ~~~~----~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~  823 (887)
                      |.+.    ...+.+++..+..|+ .++|.|+|.++.++...+|+.+|+++-|+-.+| |++++|||++|+|||+......
T Consensus       259 G~~~~~g~~~~~~l~~~~~~~~l-~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~~~  337 (405)
T TIGR03449       259 GGPSGSGLATPDALIELAAELGI-ADRVRFLPPRPPEELVHVYRAADVVAVPSYNESFGLVAMEAQACGTPVVAARVGGL  337 (405)
T ss_pred             eCCCCCcchHHHHHHHHHHHcCC-CceEEECCCCCHHHHHHHHHhCCEEEECCCCCCcChHHHHHHHcCCCEEEecCCCc
Confidence            8532    225678888999999 589999999999999999999999999966666 9999999999999998765444


Q ss_pred             hhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 002729          824 ATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSV  873 (887)
Q Consensus       824 ~~r~~~~~l~~~g~~~~~~~--~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~  873 (887)
                      .+     ++.. |-++ +++  .|.+++.+...++.+|++.+..+++..++.
T Consensus       338 ~e-----~i~~-~~~g-~~~~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~  382 (405)
T TIGR03449       338 PV-----AVAD-GETG-LLVDGHDPADWADALARLLDDPRTRIRMGAAAVEH  382 (405)
T ss_pred             Hh-----hhcc-CCce-EECCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            43     2211 4445 554  489999999999999999999999888764

Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.42  E-value=3.8e-12  Score=126.90  Aligned_cols=113  Identities=27%  Similarity=0.358  Sum_probs=68.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCcHHHHHHH
Q 002729           38 LLGAIYYQLHDYDMCIARNEEALRLEPRF----AECYGNMANAWKEKGDIDLAIRYYLVAIEL------RPNFADAWSNL  107 (887)
Q Consensus        38 ~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l  107 (887)
                      .-|.-+++.|++...+..|+.+++...++    ..+|..+|++|+-+++|++|+++-..=+.+      .-..+.+.-++
T Consensus        22 lEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL  101 (639)
T KOG1130|consen   22 LEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL  101 (639)
T ss_pred             HHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc
Confidence            34556667777777777777777766554    345666777777777777777654322211      11223344556


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCC
Q 002729          108 ASAYMRKGRLNEAAQCCRQALALNP------LLVDAHSNLGNLMKAQGL  150 (887)
Q Consensus       108 a~~~~~~g~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~g~  150 (887)
                      |..+.-.|.+++|+.+..+-+....      ....+++++|.+|...|+
T Consensus       102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk  150 (639)
T KOG1130|consen  102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGK  150 (639)
T ss_pred             cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhccc
Confidence            7777777777777777666554321      134467777777776654

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.41  E-value=2.2e-11  Score=118.14  Aligned_cols=123  Identities=17%  Similarity=0.232  Sum_probs=61.9

Q ss_pred             cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC--hHHHHH
Q 002729           80 KGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLM-KAQGL--VQEAYS  156 (887)
Q Consensus        80 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~g~--~~~A~~  156 (887)
                      .++.++++..++++++.+|++...|..+|.+|...|++++|+..|+++++++|++..++..+|.++ ...|+  +++|..
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            334444555555555555555555555555555555555555555555555555555555555432 33343  245555


Q ss_pred             HHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002729          157 CYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF  202 (887)
Q Consensus       157 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~  202 (887)
                      .++++++.+|++..++..+|..+.+.|++++|+..++++++..|.+
T Consensus       132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~  177 (198)
T PRK10370        132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR  177 (198)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            5555555555555555555555555555555555555555544443

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.41  E-value=7.1e-12  Score=134.56  Aligned_cols=221  Identities=18%  Similarity=0.210  Sum_probs=197.4

Q ss_pred             hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHH
Q 002729          236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM  315 (887)
Q Consensus       236 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  315 (887)
                      ......++..+...|-..+|+..+++.        +.|-....+|...|+..+|..+..+-++ .|+++..|..+|++..
T Consensus       398 Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~  468 (777)
T KOG1128|consen  398 WQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLH  468 (777)
T ss_pred             chHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhcc
Confidence            445567899999999999999999885        4788889999999999999999999888 7788889999998888


Q ss_pred             HcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002729          316 EWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDY  395 (887)
Q Consensus       316 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  395 (887)
                      ...-+++|.++.+..-      ..+...+|......++++++.+.++..++++|-....|+.+|.+..++++++.|.+.|
T Consensus       469 d~s~yEkawElsn~~s------arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF  542 (777)
T KOG1128|consen  469 DPSLYEKAWELSNYIS------ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAF  542 (777)
T ss_pred             ChHHHHHHHHHhhhhh------HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHH
Confidence            8777777777776543      3355566666677899999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHhhhcCChhhHhHHHHHHHHHHH
Q 002729          396 IRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIR  471 (887)
Q Consensus       396 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  471 (887)
                      ..++.++|++.++|++++.+|.+.|+..+|...++++++.+-++..+|-|.+......|.|+++.+.+.++.++-+
T Consensus       543 ~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~  618 (777)
T KOG1128|consen  543 HRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK  618 (777)
T ss_pred             HHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999988877543

>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases

Probab=99.41  E-value=8.4e-12  Score=137.00  Aligned_cols=305  Identities=17%  Similarity=0.168  Sum_probs=188.8

Q ss_pred             eecCCCCC---ChhHHhhhHHhhcCCCCCcEEEEEecCCCCChHHHHHH-----------H-h--hcCceEECCCCCHHH
Q 002729          541 YVSSDFGN---HPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRT-----------Q-S--EAEHFVDVSAMSSDM  603 (887)
Q Consensus       541 yvs~d~~~---h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~-----------~-~--~~~~~~~~~~~~~~~  603 (887)
                      +++..+..   .-...++..+++.+.+.+++|++++.............           . .  ....+..........
T Consensus         3 ii~~~~p~~~~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (377)
T cd03798           3 VISSLYPPPNNGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLLKGRLVGVERLPVLLPVVPLLKGPLLYLLAARA   82 (377)
T ss_pred             EeccCCCCCCCchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhcccccccccccccCcchhhccccchhHHHHHHH
Confidence            45555543   33446777888888888899999886654332111000           0 0  000010111112456


Q ss_pred             HHHHHH--hCCCeEEEecCCcCCCCchhhhhc-CCCceEEeccccCCCCC-------------CCcccEEEecCccCCCC
Q 002729          604 IAKLIN--EDKIQILINLNGYTKGARNEIFAM-QPAPIQVSYMGFPGTTG-------------ASYIDYLVTDEFVSPLR  667 (887)
Q Consensus       604 ~~~~i~--~~~~dil~~~~~~~~~~~~~~~~~-r~apvq~~~~g~~~t~g-------------~~~~d~~~~d~~~~p~~  667 (887)
                      +.+.++  ..++||++-......+.....+.. ...|+.++..+......             +...|.+++..-.....
T Consensus        83 ~~~~l~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~  162 (377)
T cd03798          83 LLKLLKLKRFRPDLIHAHFAYPDGFAAALLKRKLGIPLVVTLHGSDVNLLPRKRLLRALLRRALRRADAVIAVSEALADE  162 (377)
T ss_pred             HHHHHhcccCCCCEEEEeccchHHHHHHHHHHhcCCCEEEEeecchhcccCchhhHHHHHHHHHhcCCeEEeCCHHHHHH
Confidence            788888  999999976643332222222222 23577666544332221             12345555422111111


Q ss_pred             cCC--CCccceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCc
Q 002729          668 YAH--IYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNS  743 (887)
Q Consensus       668 ~~~--~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~  743 (887)
                      ...  ....++..+|++.......        +.........+...+.++++++++.  .|..+.++++|..+....|+.
T Consensus       163 ~~~~~~~~~~~~~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~  234 (377)
T cd03798         163 LKALGIDPEKVTVIPNGVDTERFS--------PADRAEARKLGLPEDKKVILFVGRLVPRKGIDYLIEALARLLKKRPDV  234 (377)
T ss_pred             HHHhcCCCCceEEcCCCcCcccCC--------CcchHHHHhccCCCCceEEEEeccCccccCHHHHHHHHHHHHhcCCCe
Confidence            112  2456677777654321111        1000000122344566777777775  588999999999998888999


Q ss_pred             eEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccc
Q 002729          744 ALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEK  822 (887)
Q Consensus       744 ~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~  822 (887)
                      ++.+.|.++. ...+.+.....++ .++|.+.|.++.++....+..+|+++-|....| |++++|||++|+|||+.....
T Consensus       235 ~l~i~g~~~~-~~~~~~~~~~~~~-~~~v~~~g~~~~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~~  312 (377)
T cd03798         235 HLVIVGDGPL-REALEALAAELGL-EDRVTFLGAVPHEEVPAYYAAADVFVLPSLREGFGLVLLEAMACGLPVVATDVGG  312 (377)
T ss_pred             EEEEEcCCcc-hHHHHHHHHhcCC-cceEEEeCCCCHHHHHHHHHhcCeeecchhhccCChHHHHHHhcCCCEEEecCCC
Confidence            9999987665 5677777888888 588999999999999999999999999966555 999999999999999877665


Q ss_pred             hhhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHH
Q 002729          823 MATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQK  862 (887)
Q Consensus       823 ~~~r~~~~~l~~~g~~~~~~~--~~~~~y~~~a~~l~~d~~~  862 (887)
                      +.+.+..      +..+ ++.  .|.+++++....+..|++.
T Consensus       313 ~~~~~~~------~~~g-~~~~~~~~~~l~~~i~~~~~~~~~  347 (377)
T cd03798         313 IPEIITD------GENG-LLVPPGDPEALAEAILRLLADPWL  347 (377)
T ss_pred             hHHHhcC------Ccce-eEECCCCHHHHHHHHHHHhcCcHH
Confidence            5543321      3323 333  6899999999999999885

wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.

>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases

Probab=99.41  E-value=5.2e-12  Score=138.42  Aligned_cols=156  Identities=18%  Similarity=0.217  Sum_probs=120.0

Q ss_pred             CCCCCCCCCCcEE--EEecCCC--CCCCHHHHHHHHHHHhh-cCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCC
Q 002729          703 KRSDYGLPEDKFI--FACFNQL--YKMDPEIFNTWCNILRR-VPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDV  777 (887)
Q Consensus       703 ~r~~~~l~~~~~~--~~~~~~~--~k~~~~~~~~~~~il~~-~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~  777 (887)
                      .|..++++++.++  |++....  .|..+.++++|..+.+. .|+.+++++|.++....        .++ .++|.|.|.
T Consensus       181 ~~~~~~~~~~~~~i~~~~~~~~~~~K~~~~ll~a~~~l~~~~~~~~~~~i~G~~~~~~~--------~~~-~~~v~~~g~  251 (365)
T cd03825         181 ARKRLGLPADKKIILFGAVGGTDPRKGFDELIEALKRLAERWKDDIELVVFGASDPEIP--------PDL-PFPVHYLGS  251 (365)
T ss_pred             HHHHhCCCCCCeEEEEEecCCCccccCHHHHHHHHHHhhhccCCCeEEEEeCCCchhhh--------ccC-CCceEecCC
Confidence            4566777766544  5555554  79999999999877654 68899999887654211        145 578999999


Q ss_pred             CC-cHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCcccc--CCHHHHHHHH
Q 002729          778 AM-KQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERA  853 (887)
Q Consensus       778 ~~-~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~--~~~~~y~~~a  853 (887)
                      ++ .++...+|+.+|+++-|+-+.| |++++|||++|+|||+.....+.+-+..      +.++ ++.  .|.+++++..
T Consensus       252 ~~~~~~~~~~~~~ad~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~~~~e~~~~------~~~g-~~~~~~~~~~~~~~l  324 (365)
T cd03825         252 LNDDESLALIYSAADVFVVPSLQENFPNTAIEALACGTPVVAFDVGGIPDIVDH------GVTG-YLAKPGDPEDLAEGI  324 (365)
T ss_pred             cCCHHHHHHHHHhCCEEEeccccccccHHHHHHHhcCCCEEEecCCCChhheeC------CCce-EEeCCCCHHHHHHHH
Confidence            98 6678889999999999966666 9999999999999998877666664432      3344 444  4789999999


Q ss_pred             HHHhcCHHHHHHHHHHHHhhc
Q 002729          854 VSLALDRQKLQALTNKLKSVR  874 (887)
Q Consensus       854 ~~l~~d~~~~~~~~~~~~~~~  874 (887)
                      .++.+|++.+.+++.+.++..
T Consensus       325 ~~l~~~~~~~~~~~~~~~~~~  345 (365)
T cd03825         325 EWLLADPDEREELGEAARELA  345 (365)
T ss_pred             HHHHhCHHHHHHHHHHHHHHH
Confidence            999999999999998887654

wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.

>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases

Probab=99.40  E-value=2.9e-11  Score=131.77  Aligned_cols=153  Identities=15%  Similarity=0.142  Sum_probs=118.4

Q ss_pred             CCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHH-HHHHcCCCCCcEEEcCCCCcHHHHHhc
Q 002729          711 EDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRA-YAVAQGVQPDQIIFTDVAMKQEHIRRS  787 (887)
Q Consensus       711 ~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~-~~~~~g~~~~r~~~~~~~~~~~~~~~~  787 (887)
                      .+.++|+.++++  .|..+.+++++..+.+..|+.+|+++|.++.. ..... .+...+. .++|.|.|.  .++...+|
T Consensus       186 ~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~-~~~~~~~~~~~~~-~~~v~~~g~--~~~~~~~~  261 (359)
T cd03808         186 EDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEE-NPAAILEIEKLGL-EGRVEFLGF--RDDVPELL  261 (359)
T ss_pred             CCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcc-hhhHHHHHHhcCC-cceEEEeec--cccHHHHH
Confidence            445667766665  69999999999999888899999999977652 22222 2556666 588999998  55678889


Q ss_pred             cCCcEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHH
Q 002729          788 SLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQ  864 (887)
Q Consensus       788 ~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~--~~~~~y~~~a~~l~~d~~~~~  864 (887)
                      +.+|+++-|..+.| |++++|||++|+|||+........-+.     . |-.+ ++.  +|.+++++....+..|++.+.
T Consensus       262 ~~adi~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~~~~~i~-----~-~~~g-~~~~~~~~~~~~~~i~~l~~~~~~~~  334 (359)
T cd03808         262 AAADVFVLPSYREGLPRVLLEAMAMGRPVIATDVPGCREAVI-----D-GVNG-FLVPPGDAEALADAIERLIEDPELRA  334 (359)
T ss_pred             HhccEEEecCcccCcchHHHHHHHcCCCEEEecCCCchhhhh-----c-Ccce-EEECCCCHHHHHHHHHHHHhCHHHHH
Confidence            99999999976666 999999999999999976665544322     1 4445 554  478999999999999999999


Q ss_pred             HHHHHHHhhc
Q 002729          865 ALTNKLKSVR  874 (887)
Q Consensus       865 ~~~~~~~~~~  874 (887)
                      .++...++..
T Consensus       335 ~~~~~~~~~~  344 (359)
T cd03808         335 RMGQAARKRA  344 (359)
T ss_pred             HHHHHHHHHH
Confidence            9988877663

cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.

>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=99.40  E-value=1.6e-12  Score=125.17  Aligned_cols=160  Identities=16%  Similarity=0.199  Sum_probs=130.9

Q ss_pred             CCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhh-cCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcH
Q 002729          705 SDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRR-VPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQ  781 (887)
Q Consensus       705 ~~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~-~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~  781 (887)
                      ...+.+++.++++++++.  .|....+++++..+..+ .|+..|+++|.++. ...+...+...++ .++|.|.|..+..
T Consensus         7 ~~~~~~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~~-~~~~~~~~~~~~~-~~~i~~~~~~~~~   84 (172)
T PF00534_consen    7 EKLKIPDKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDGEY-KKELKNLIEKLNL-KENIIFLGYVPDD   84 (172)
T ss_dssp             HHTTT-TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHCCH-HHHHHHHHHHTTC-GTTEEEEESHSHH
T ss_pred             HHcCCCCCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEccccc-ccccccccccccc-ccccccccccccc
Confidence            344566777888888886  48999999999998875 89999999995544 5568888889998 6899999999988


Q ss_pred             HHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhc
Q 002729          782 EHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLAL  858 (887)
Q Consensus       782 ~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~--~~~~~y~~~a~~l~~  858 (887)
                      +...+|+.+|+++-|..+.| |++.+|||++|+|||+.....+.+-+..      |.++ ++.  .|.++.++...++..
T Consensus        85 ~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~~~~~e~~~~------~~~g-~~~~~~~~~~l~~~i~~~l~  157 (172)
T PF00534_consen   85 ELDELYKSSDIFVSPSRNEGFGLSLLEAMACGCPVIASDIGGNNEIIND------GVNG-FLFDPNDIEELADAIEKLLN  157 (172)
T ss_dssp             HHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEESSTHHHHHSGT------TTSE-EEESTTSHHHHHHHHHHHHH
T ss_pred             ccccccccceeccccccccccccccccccccccceeeccccCCceeecc------ccce-EEeCCCCHHHHHHHHHHHHC
Confidence            89999999999999977666 9999999999999999887777765543      4455 554  567999999999999


Q ss_pred             CHHHHHHHHHHHHhh
Q 002729          859 DRQKLQALTNKLKSV  873 (887)
Q Consensus       859 d~~~~~~~~~~~~~~  873 (887)
                      |++.++.|+++.|++
T Consensus       158 ~~~~~~~l~~~~~~~  172 (172)
T PF00534_consen  158 DPELRQKLGKNARER  172 (172)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhcCC
Confidence            999999999998864

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....

>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases

Probab=99.40  E-value=5.3e-12  Score=137.88  Aligned_cols=309  Identities=14%  Similarity=0.097  Sum_probs=185.5

Q ss_pred             eeeeecCCCCCChh---HHhhhHHhhcCCCCCcEEEEEecCCCCChHHHHH--HHhhcC----------------ceEEC
Q 002729          538 RVGYVSSDFGNHPL---SHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQR--TQSEAE----------------HFVDV  596 (887)
Q Consensus       538 riGyvs~d~~~h~~---~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~--~~~~~~----------------~~~~~  596 (887)
                      ||-+++..|..+..   ..++..+.+.+...++||.++.............  ......                .+...
T Consensus         1 kIl~i~~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (359)
T cd03823           1 RILVVNHLYPPRSVGGAEVVAHDLAEALAKRGHEVAVLTAGEDPPRQDKEVIGVVVYGRPIDEVLRSALPRDLFHLSDYD   80 (359)
T ss_pred             CeeEEcccCCcccccchHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccccceeeccccccccCCCchhhhhHHHhcc
Confidence            46677777755422   2466677777777788988887654332110000  000000                00000


Q ss_pred             CCCCHHHHHHHHHhCCCeEEEecCCcCCCCch-hhhhcCCCceEEecccc----CCCCC-CCcccEEEecCccCCCCcCC
Q 002729          597 SAMSSDMIAKLINEDKIQILINLNGYTKGARN-EIFAMQPAPIQVSYMGF----PGTTG-ASYIDYLVTDEFVSPLRYAH  670 (887)
Q Consensus       597 ~~~~~~~~~~~i~~~~~dil~~~~~~~~~~~~-~~~~~r~apvq~~~~g~----~~t~g-~~~~d~~~~d~~~~p~~~~~  670 (887)
                      .......+.+.|...++||++-......+... ........|+.++.-++    +.... ....|.+++-.-..-.....
T Consensus        81 ~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~hd~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~  160 (359)
T cd03823          81 NPAVVAEFARLLEDFRPDVVHFHHLQGLGVSILRAARDRGIPIVLTLHDYWLICPRQGLFKKGGDAVIAPSRFLLDRYVA  160 (359)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEECCccchHHHHHHHHHhcCCCEEEEEeeeeeecchhhhhccCCCEEEEeCHHHHHHHHH
Confidence            00113556788889999999755442211111 12233446877664322    11111 12225554411100000011


Q ss_pred             C--CccceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEE
Q 002729          671 I--YSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALW  746 (887)
Q Consensus       671 ~--~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~  746 (887)
                      .  ..+++..+|++.......        +.   .+   +.+++.++++.+++.  .|..+.+++++..+.+  |+.+|+
T Consensus       161 ~~~~~~~~~vi~n~~~~~~~~--------~~---~~---~~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~--~~~~l~  224 (359)
T cd03823         161 NGLFAEKISVIRNGIDLDRAK--------RP---RR---APPGGRLRFGFIGQLTPHKGVDLLLEAFKRLPR--GDIELV  224 (359)
T ss_pred             cCCCccceEEecCCcChhhcc--------cc---cc---CCCCCceEEEEEecCccccCHHHHHHHHHHHHh--cCcEEE
Confidence            1  125666666643321111        10   00   345566777777775  5889999999988776  889999


Q ss_pred             EecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCC--CCCchhHHHHHHhCCceeeecccchh
Q 002729          747 LLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPL--CNAHTTGTDILWAGLPMITLPLEKMA  824 (887)
Q Consensus       747 ~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~--~~g~~t~~eal~~gvPvvt~~g~~~~  824 (887)
                      ++|.++... ......   +. .++|.|.|.++..+...+|..+|+++-|..  .+.|++++|||++|+|||+.......
T Consensus       225 i~G~~~~~~-~~~~~~---~~-~~~v~~~g~~~~~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~  299 (359)
T cd03823         225 IVGNGLELE-EESYEL---EG-DPRVEFLGAYPQEEIDDFYAEIDVLVVPSIWPENFPLVIREALAAGVPVIASDIGGMA  299 (359)
T ss_pred             EEcCchhhh-HHHHhh---cC-CCeEEEeCCCCHHHHHHHHHhCCEEEEcCcccCCCChHHHHHHHCCCCEEECCCCCHH
Confidence            999766522 222222   44 578999999999999999999999999964  44499999999999999997766655


Q ss_pred             hhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 002729          825 TRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVR  874 (887)
Q Consensus       825 ~r~~~~~l~~~g~~~~~~~--~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~~  874 (887)
                      +.+..      |..+ ++.  .|.+++++....+.+|++.++.++++.++..
T Consensus       300 e~i~~------~~~g-~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~  344 (359)
T cd03823         300 ELVRD------GVNG-LLFPPGDAEDLAAALERLIDDPDLLERLRAGIEPPR  344 (359)
T ss_pred             HHhcC------CCcE-EEECCCCHHHHHHHHHHHHhChHHHHHHHHhHHHhh
Confidence            53322      3344 444  5689999999999999999999999888754

ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.39  E-value=7.8e-12  Score=128.22  Aligned_cols=256  Identities=16%  Similarity=0.098  Sum_probs=161.4

Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHhhHHHHHHHcCChHHHHH
Q 002729          179 FMESGDLNRALQYYKEAVKLKPT-FPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAIL  257 (887)
Q Consensus       179 ~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~  257 (887)
                      ++-.|+|.+++...+ ....++. .......+.+++..+|+++..+......  ..|...+...++..+...++.+.++.
T Consensus        11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~--~~~~l~av~~la~y~~~~~~~e~~l~   87 (290)
T PF04733_consen   11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKS--SSPELQAVRLLAEYLSSPSDKESALE   87 (290)
T ss_dssp             HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT--SSCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred             HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccC--CChhHHHHHHHHHHHhCccchHHHHH
Confidence            444566666665444 1122221 1234455566666666666554433221  13344444555554444445555555


Q ss_pred             HHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccC
Q 002729          258 YYKQAIGCD--PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTT  335 (887)
Q Consensus       258 ~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  335 (887)
                      .++..+...  +.+.......|.++...|++++|++.+.+.     .+.+.......++.+.++++.|.+.++.+.+.+.
T Consensus        88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~e  162 (290)
T PF04733_consen   88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDE  162 (290)
T ss_dssp             HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSC
T ss_pred             HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            555444221  123334455566666777777777776543     4566666777778888888888888887777766


Q ss_pred             CCchhHhhHHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 002729          336 GLSAPFNNLAVIYKQQG--NYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLA  413 (887)
Q Consensus       336 ~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  413 (887)
                      +...+....+.+....|  ++.+|...|+++.+..+.++..+..++.++..+|++++|.+.++++++.+|++++++.+++
T Consensus       163 D~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNli  242 (290)
T PF04733_consen  163 DSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLI  242 (290)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence            55544444455555544  5888888888888877788888888899999999999999999999888899999888998


Q ss_pred             HHHHhCCCH-HHHHHHHHHHHHcCCCChHH
Q 002729          414 SAYKDSGHV-EAAIKSYKQALLLRPDFPEA  442 (887)
Q Consensus       414 ~~~~~~g~~-~~A~~~~~~al~~~p~~~~~  442 (887)
                      .+....|+. +.+.+++.++...+|+++-.
T Consensus       243 v~~~~~gk~~~~~~~~l~qL~~~~p~h~~~  272 (290)
T PF04733_consen  243 VCSLHLGKPTEAAERYLSQLKQSNPNHPLV  272 (290)
T ss_dssp             HHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred             HHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence            888888887 66777888888888887644

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases

Probab=99.39  E-value=3e-11  Score=130.57  Aligned_cols=283  Identities=12%  Similarity=-0.000  Sum_probs=170.7

Q ss_pred             ceeeeecCCCC------CChhHHhhhHHhhcCCCCCcEEEEEecCCCCChHHHHHHHhhcC--ceEE--CC----CCCHH
Q 002729          537 LRVGYVSSDFG------NHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAE--HFVD--VS----AMSSD  602 (887)
Q Consensus       537 lriGyvs~d~~------~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~----~~~~~  602 (887)
                      +||.+|+..+.      ..-+..++..+.+.+.+.++||+++.........   .......  .+..  ..    .....
T Consensus         1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (335)
T cd03802           1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDSKTAA---PLVPVVPEPLRLDAPGRDRAEAEALA   77 (335)
T ss_pred             CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCCCccc---ceeeccCCCcccccchhhHhhHHHHH
Confidence            47888887762      2233367778888888888999998865432111   0111111  1110  00    01124


Q ss_pred             HHHHHHHhCCCeEEEecCCcCCCCchhhhhcCCCceEEeccccCCCCCC------CcccEEEecCccCCCCcCCCC---c
Q 002729          603 MIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGA------SYIDYLVTDEFVSPLRYAHIY---S  673 (887)
Q Consensus       603 ~~~~~i~~~~~dil~~~~~~~~~~~~~~~~~r~apvq~~~~g~~~t~g~------~~~d~~~~d~~~~p~~~~~~~---~  673 (887)
                      .+.+.++..++||++-.+......   +...+..|+.++..+.+.....      ...|.+++     ++......   .
T Consensus        78 ~~~~~~~~~~~Divh~~~~~~~~~---~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~-----~s~~~~~~~~~~  149 (335)
T cd03802          78 LAERALAAGDFDIVHNHSLHLPLP---FARPLPVPVVTTLHGPPDPELLKLYYAARPDVPFVS-----ISDAQRRPWPPL  149 (335)
T ss_pred             HHHHHHhcCCCCEEEecCcccchh---hhcccCCCEEEEecCCCCcccchHHHhhCcCCeEEE-----ecHHHHhhcccc
Confidence            567888889999996433332211   2334556877776655442221      12222322     22211111   0


Q ss_pred             cceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCChh
Q 002729          674 EKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA  753 (887)
Q Consensus       674 e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~  753 (887)
                      .++..+|++.....++        +  .+.      +...++|.+.-...|..+.++++..     .++.+|+++|.++.
T Consensus       150 ~~~~vi~ngvd~~~~~--------~--~~~------~~~~i~~~Gr~~~~Kg~~~li~~~~-----~~~~~l~i~G~~~~  208 (335)
T cd03802         150 PWVATVHNGIDLDDYP--------F--RGP------KGDYLLFLGRISPEKGPHLAIRAAR-----RAGIPLKLAGPVSD  208 (335)
T ss_pred             cccEEecCCcChhhCC--------C--CCC------CCCEEEEEEeeccccCHHHHHHHHH-----hcCCeEEEEeCCCC
Confidence            4566666644321111        1  000      1223444444456798888888653     25789999997764


Q ss_pred             hHHHHHHHHHHcC-CCCCcEEEcCCCCcHHHHHhccCCcEEecCCC--CCCchhHHHHHHhCCceeeecccchhhhhHHH
Q 002729          754 GEMRLRAYAVAQG-VQPDQIIFTDVAMKQEHIRRSSLADLFLDTPL--CNAHTTGTDILWAGLPMITLPLEKMATRVAGS  830 (887)
Q Consensus       754 ~~~~l~~~~~~~g-~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~--~~g~~t~~eal~~gvPvvt~~g~~~~~r~~~~  830 (887)
                       ...+........ + .++|+|.|.++..+....++.+|+++-|..  .+.|++++|||+||+|||+.......+-+.. 
T Consensus       209 -~~~~~~~~~~~~~~-~~~v~~~G~~~~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~~~~e~i~~-  285 (335)
T cd03802         209 -PDYFYREIAPELLD-GPDIEYLGEVGGAEKAELLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFRRGAVPEVVED-  285 (335)
T ss_pred             -HHHHHHHHHHhccc-CCcEEEeCCCCHHHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCCCchhheeC-
Confidence             444444444443 4 588999999999999999999999999865  3449999999999999998877666665443 


Q ss_pred             HHHhcCCCCccccCCHHHHHHHHHHHhcCH
Q 002729          831 LCLATGLGEEMIVNSMKEYEERAVSLALDR  860 (887)
Q Consensus       831 ~l~~~g~~~~~~~~~~~~y~~~a~~l~~d~  860 (887)
                           |.++ +++++.+++++....+..+.
T Consensus       286 -----~~~g-~l~~~~~~l~~~l~~l~~~~  309 (335)
T cd03802         286 -----GVTG-FLVDSVEELAAAVARADRLD  309 (335)
T ss_pred             -----CCcE-EEeCCHHHHHHHHHHHhccH
Confidence                 5567 77777999988888876543

aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.

>PLN02939 transferase, transferring glycosyl groups

Probab=99.39  E-value=7.4e-12  Score=142.66  Aligned_cols=164  Identities=12%  Similarity=0.008  Sum_probs=119.5

Q ss_pred             CCCCCCCCC---CcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEecCChh--hHHHHHHHHHHcCCCCCcEEEc
Q 002729          703 KRSDYGLPE---DKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAA--GEMRLRAYAVAQGVQPDQIIFT  775 (887)
Q Consensus       703 ~r~~~~l~~---~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~--~~~~l~~~~~~~g~~~~r~~~~  775 (887)
                      .|.++||+.   +.++||+++|+  .|..+.+++++.+++.  ++.+|+|+|.|+.  ....++..+...|+ .++|.|.
T Consensus       766 LRkelGL~~~d~d~pLIg~VGRL~~QKGiDlLleA~~~Ll~--~dvqLVIvGdGp~~~~e~eL~~La~~l~l-~drV~Fl  842 (977)
T PLN02939        766 LRKQLGLSSADASQPLVGCITRLVPQKGVHLIRHAIYKTAE--LGGQFVLLGSSPVPHIQREFEGIADQFQS-NNNIRLI  842 (977)
T ss_pred             HHHHhCCCcccccceEEEEeecCCcccChHHHHHHHHHHhh--cCCEEEEEeCCCcHHHHHHHHHHHHHcCC-CCeEEEE
Confidence            678899984   56899999997  4999999999998875  5789999998753  24677888888898 6899999


Q ss_pred             CCCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHH---HHHHhcCCCCcccc--CCHHHH
Q 002729          776 DVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAG---SLCLATGLGEEMIV--NSMKEY  849 (887)
Q Consensus       776 ~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~---~~l~~~g~~~~~~~--~~~~~y  849 (887)
                      |..+...-...|..+|+||-|+-+.+ |.|.+|||++|+|+|+..-.....-|..   ..+..-|-++ ++.  .|++++
T Consensus       843 G~~de~lah~IYAaADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NG-fLf~~~D~eaL  921 (977)
T PLN02939        843 LKYDEALSHSIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNG-FTFLTPDEQGL  921 (977)
T ss_pred             eccCHHHHHHHHHhCCEEEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCce-EEecCCCHHHH
Confidence            98776655678999999999988888 9999999999988775433223222110   0000013344 443  578887


Q ss_pred             HHHHHHHh----cCHHHHHHHHHHH
Q 002729          850 EERAVSLA----LDRQKLQALTNKL  870 (887)
Q Consensus       850 ~~~a~~l~----~d~~~~~~~~~~~  870 (887)
                      .+...++.    .|++.+.+++.+.
T Consensus       922 a~AL~rAL~~~~~dpe~~~~L~~~a  946 (977)
T PLN02939        922 NSALERAFNYYKRKPEVWKQLVQKD  946 (977)
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHH
Confidence            76655543    4899888887653

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.39  E-value=4.2e-12  Score=126.59  Aligned_cols=307  Identities=21%  Similarity=0.251  Sum_probs=145.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCCHHHHHHHH
Q 002729           73 MANAWKEKGDIDLAIRYYLVAIELRPNFA----DAWSNLASAYMRKGRLNEAAQCCRQALAL------NPLLVDAHSNLG  142 (887)
Q Consensus        73 la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~la  142 (887)
                      -|.-+++.|++...+.+|+.+++...++.    .+|..+|.+|+..++|++|+++-.-=+.+      .-......-++|
T Consensus        23 EGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG  102 (639)
T KOG1130|consen   23 EGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG  102 (639)
T ss_pred             HHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence            35566677777777777777777655542    24556666666666666666654322211      111223344556


Q ss_pred             HHHHHcCChHHHHHHHHHHHhhC------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 002729          143 NLMKAQGLVQEAYSCYLEALRIQ------PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKAL  216 (887)
Q Consensus       143 ~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~  216 (887)
                      +.+...|.+++|+.+..+-+...      -....++++++.+|...|+--....--    +....+.++.          
T Consensus       103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pe----e~g~f~~ev~----------  168 (639)
T KOG1130|consen  103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPE----EKGAFNAEVT----------  168 (639)
T ss_pred             chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChh----hcccccHHHH----------
Confidence            66666666666665555444321      111233444444444333211000000    0000000000          


Q ss_pred             CChHHHHHHHHHHHhhCC-------ChhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHc
Q 002729          217 GMPQEAIMCYQRAVQTRP-------NAIAFGNLASTYYERGQADMAILYYKQAIGCDPR------FLEAYNNLGNALKDV  283 (887)
Q Consensus       217 g~~~~A~~~~~~~~~~~p-------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~  283 (887)
                      ..++.|.++|..-+++..       ...++-++|..|+-.|+++.|+..-+.-+.+...      .-.++.++|+++.-.
T Consensus       169 ~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl  248 (639)
T KOG1130|consen  169 SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL  248 (639)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh
Confidence            001222333332222211       1334444555555555555555444443322111      112444455555555


Q ss_pred             CCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccC--CCchhHhhHHHHHHHcCCHHHHHHHH
Q 002729          284 GRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTT--GLSAPFNNLAVIYKQQGNYADAISCY  361 (887)
Q Consensus       284 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~  361 (887)
                      |+++.|+++|++.+.+.                              +++..  ..+...+.+|..|.-..++++|+.++
T Consensus       249 g~fe~A~ehYK~tl~LA------------------------------ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh  298 (639)
T KOG1130|consen  249 GNFELAIEHYKLTLNLA------------------------------IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYH  298 (639)
T ss_pred             cccHhHHHHHHHHHHHH------------------------------HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            55555555554443221                              01111  12233455666666666677777666


Q ss_pred             HHHHhcCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CC-cHHHHHHHHHHHHhCCCHH
Q 002729          362 NEVLRIDP------LAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR-----PT-MAEAHANLASAYKDSGHVE  423 (887)
Q Consensus       362 ~~al~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----p~-~~~~~~~la~~~~~~g~~~  423 (887)
                      ++-+.+..      ....+++.+|..+..+|..++|+.+.++.+++.     +. ...+..++...-...|..+
T Consensus       299 ~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~d  372 (639)
T KOG1130|consen  299 QRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQED  372 (639)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCc
Confidence            66555421      234567777788888888777777777666542     22 2345566666666666554

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.38  E-value=1.6e-11  Score=131.90  Aligned_cols=219  Identities=17%  Similarity=0.153  Sum_probs=151.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHhhHHHHHHH
Q 002729          169 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYE  248 (887)
Q Consensus       169 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~la~~~~~  248 (887)
                      ......++..+...|-...|+..+++.        ..|-....+|...|+..+|..+..+-++..|+...|..+|.+..+
T Consensus       398 Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d  469 (777)
T KOG1128|consen  398 WQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHD  469 (777)
T ss_pred             chHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccC
Confidence            344556677777777777777777653        445556677777777777777777777766666666666666666


Q ss_pred             cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHH
Q 002729          249 RGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYK  328 (887)
Q Consensus       249 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  328 (887)
                      ..-+++|.++.+..      +..+...+|......++++++.++++..++++|-....|+.+|.+..+.++++.|.+.|.
T Consensus       470 ~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~  543 (777)
T KOG1128|consen  470 PSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFH  543 (777)
T ss_pred             hHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence            65566665555443      223555556666666777777777777777777777777777777777777777777777


Q ss_pred             HHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002729          329 ATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI  401 (887)
Q Consensus       329 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  401 (887)
                      ..+...|++..+|++++..|.+.|+-.+|...++++++.+-.+...|-+.-.+..+.|.+++|++.+.+.+.+
T Consensus       544 rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~  616 (777)
T KOG1128|consen  544 RCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL  616 (777)
T ss_pred             HHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence            7777777777777777777777777777777777777777666777777777777777777777777776655

>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family

Probab=99.38  E-value=3.3e-12  Score=141.14  Aligned_cols=162  Identities=14%  Similarity=0.145  Sum_probs=124.9

Q ss_pred             CCCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEecCChh---hHHHHHHHHHHcCCCCCcEEEc-C
Q 002729          703 KRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAA---GEMRLRAYAVAQGVQPDQIIFT-D  776 (887)
Q Consensus       703 ~r~~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~---~~~~l~~~~~~~g~~~~r~~~~-~  776 (887)
                      .|.++|++++.+++++++++  .|..+.+++++.++.   ++.+++++|.++.   ..+.+++.+...+...++|+|. |
T Consensus       191 ~~~~~~~~~~~~~i~~~Grl~~~Kg~~~li~a~~~l~---~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  267 (388)
T TIGR02149       191 VLDRYGIDRSRPYILFVGRITRQKGVPHLLDAVHYIP---KDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINK  267 (388)
T ss_pred             HHHHhCCCCCceEEEEEcccccccCHHHHHHHHHHHh---hcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecC
Confidence            46778888888888888886  488999999998763   4677887765443   2356677777777765677765 6


Q ss_pred             CCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCcccc--CCH------H
Q 002729          777 VAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSM------K  847 (887)
Q Consensus       777 ~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~--~~~------~  847 (887)
                      .++.++...+|..+|++|-|+.+.| |++++|||++|+|||+.......+-+..      |..+ ++.  .+.      +
T Consensus       268 ~~~~~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~~~~e~i~~------~~~G-~~~~~~~~~~~~~~~  340 (388)
T TIGR02149       268 MLPKEELVELLSNAEVFVCPSIYEPLGIVNLEAMACGTPVVASATGGIPEVVVD------GETG-FLVPPDNSDADGFQA  340 (388)
T ss_pred             CCCHHHHHHHHHhCCEEEeCCccCCCChHHHHHHHcCCCEEEeCCCCHHHHhhC------CCce-EEcCCCCCcccchHH
Confidence            7889999999999999999977777 9999999999999998766555543321      4445 444  344      7


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 002729          848 EYEERAVSLALDRQKLQALTNKLKSVR  874 (887)
Q Consensus       848 ~y~~~a~~l~~d~~~~~~~~~~~~~~~  874 (887)
                      ++.+....+..|++.++++++..++..
T Consensus       341 ~l~~~i~~l~~~~~~~~~~~~~a~~~~  367 (388)
T TIGR02149       341 ELAKAINILLADPELAKKMGIAGRKRA  367 (388)
T ss_pred             HHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            899999999999999999988877654

This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.36  E-value=1.2e-10  Score=132.88  Aligned_cols=151  Identities=13%  Similarity=0.074  Sum_probs=136.1

Q ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCc
Q 002729          259 YKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLS  338 (887)
Q Consensus       259 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  338 (887)
                      +.......|.+.+++..||.+....|.+++|...++.+++..|++..+...++.++.+.+++++|+..+++++...|++.
T Consensus        75 ~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~  154 (694)
T PRK15179         75 LLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSA  154 (694)
T ss_pred             HHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCH
Confidence            33334567888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 002729          339 APFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAH  409 (887)
Q Consensus       339 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  409 (887)
                      ..++.+|.++.+.|++++|+.+|++++..+|+++.++..+|.++...|+.++|...|+++++...+-...+
T Consensus       155 ~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~  225 (694)
T PRK15179        155 REILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKL  225 (694)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence            99999999999999999999999999999999999999999999999999999999999998875544443

>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding

Probab=99.35  E-value=2.5e-11  Score=133.16  Aligned_cols=149  Identities=17%  Similarity=0.225  Sum_probs=119.7

Q ss_pred             EEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEE
Q 002729          714 FIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLF  793 (887)
Q Consensus       714 ~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~  793 (887)
                      ++|.+--...|..+.+++++.++....|+.+|.|+|.++. ...+.......++ .++|.|.|.  ..+....|+.+|++
T Consensus       207 i~~vgrl~~~K~~~~li~a~~~l~~~~~~~~l~i~G~g~~-~~~~~~~~~~~~~-~~~v~~~g~--~~~~~~~~~~ad~~  282 (372)
T cd04949         207 IITVARLAPEKQLDQLIKAFAKVVKQVPDATLDIYGYGDE-EEKLKELIEELGL-EDYVFLKGY--TRDLDEVYQKAQLS  282 (372)
T ss_pred             EEEEEccCcccCHHHHHHHHHHHHHhCCCcEEEEEEeCch-HHHHHHHHHHcCC-cceEEEcCC--CCCHHHHHhhhhEE
Confidence            3333333457999999999999999999999999998776 5677777888898 689999994  34567789999999


Q ss_pred             ecCCCCCC-chhHHHHHHhCCceeeeccc-chhhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHHhcCHHHHHHHHHH
Q 002729          794 LDTPLCNA-HTTGTDILWAGLPMITLPLE-KMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSLALDRQKLQALTNK  869 (887)
Q Consensus       794 ld~~~~~g-~~t~~eal~~gvPvvt~~g~-~~~~r~~~~~l~~~g~~~~~~~~--~~~~y~~~a~~l~~d~~~~~~~~~~  869 (887)
                      ++|..++| |.+.+|||++|+|||+.... ...+-+      .=|.++ ++++  |.+++.+....+.+|++.++.+++.
T Consensus       283 v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~g~~~~v------~~~~~G-~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~  355 (372)
T cd04949         283 LLTSQSEGFGLSLMEALSHGLPVISYDVNYGPSEII------EDGENG-YLVPKGDIEALAEAIIELLNDPKLLQKFSEA  355 (372)
T ss_pred             EecccccccChHHHHHHhCCCCEEEecCCCCcHHHc------ccCCCc-eEeCCCcHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            99987776 99999999999999986532 222211      115666 6665  9999999999999999999999998


Q ss_pred             HHhh
Q 002729          870 LKSV  873 (887)
Q Consensus       870 ~~~~  873 (887)
                      .++.
T Consensus       356 a~~~  359 (372)
T cd04949         356 AYEN  359 (372)
T ss_pred             HHHH
Confidence            8865

In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=99.35  E-value=3e-07  Score=101.96  Aligned_cols=449  Identities=14%  Similarity=0.099  Sum_probs=269.2

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 002729            7 HQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLA   86 (887)
Q Consensus         7 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A   86 (887)
                      .-....+++.+|++...+++++.|+...+....|.++.++|+.++|..+++..-...+++..++..+-.+|..+|++++|
T Consensus        17 ~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~   96 (932)
T KOG2053|consen   17 YDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA   96 (932)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence            34677899999999999999999999999999999999999999999888887777788889999999999999999999


Q ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCChH---------HHHH
Q 002729           87 IRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMK-AQGLVQ---------EAYS  156 (887)
Q Consensus        87 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~g~~~---------~A~~  156 (887)
                      ..+|+++...+|+ .+....+-.+|.+.++|.+-.+.--++.+..|+++..+.....+.. .....+         -|..
T Consensus        97 ~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~  175 (932)
T KOG2053|consen   97 VHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEK  175 (932)
T ss_pred             HHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence            9999999999999 8888999999999999988777777777788887765444444333 333222         3455


Q ss_pred             HHHHHHhhC-CChHH-HHHHHHHHHHHcCCHHHHHHHHHHH-Hh-hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002729          157 CYLEALRIQ-PTFAI-AWSNLAGLFMESGDLNRALQYYKEA-VK-LKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT  232 (887)
Q Consensus       157 ~~~~al~~~-p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~-l~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  232 (887)
                      ..++.++.. +-... -....-.++..+|++++|.+.+..- .+ ..+.+..........+...+++.+-.++..+++..
T Consensus       176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k  255 (932)
T KOG2053|consen  176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK  255 (932)
T ss_pred             HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence            556666554 21111 1222334566789999999998432 23 33444555566778888899999999999999988


Q ss_pred             CCCh-hHH----hhH---------HHHHHHcCChHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002729          233 RPNA-IAF----GNL---------ASTYYERGQADMAILYYKQAIGCDPRFL-EAYNNLGNALKDVGRVDEAIQCYNQCL  297 (887)
Q Consensus       233 ~p~~-~~~----~~l---------a~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al  297 (887)
                      .++. ..+    ..+         +..+...+..+..++..++.++.....+ -++..+-.-+...|+.+++...|-+-.
T Consensus       256 ~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kf  335 (932)
T KOG2053|consen  256 GNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKKF  335 (932)
T ss_pred             CCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHHh
Confidence            7773 121    111         1112222344445555555554422222 123333333345577777665554332


Q ss_pred             hcCCCC------------hHH------------------------HHhHHHHHHHcCChh-----HHHHHHHHHH-----
Q 002729          298 SLQPSH------------PQA------------------------LTNLGNIYMEWNMLP-----AAASYYKATL-----  331 (887)
Q Consensus       298 ~~~p~~------------~~~------------------------~~~l~~~~~~~g~~~-----~A~~~~~~~~-----  331 (887)
                      -..|-.            +.-                        +...-.+....|.+.     .-..++++..     
T Consensus       336 g~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~  415 (932)
T KOG2053|consen  336 GDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEK  415 (932)
T ss_pred             CCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhc
Confidence            221110            000                        000111111122111     1111221111     


Q ss_pred             --hcc----CC---CchhH-----hhHHHHHHHcCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002729          332 --AVT----TG---LSAPF-----NNLAVIYKQQGN---YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQD  394 (887)
Q Consensus       332 --~~~----~~---~~~~~-----~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  394 (887)
                        +..    |.   ....+     +.+...+.+.++   .-+|+.+++..+..+|.+...-..+..+|.-.|-+..|.+.
T Consensus       416 gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~  495 (932)
T KOG2053|consen  416 GLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYEL  495 (932)
T ss_pred             cccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHH
Confidence              110    10   11111     223344444443   34666666666666777776666666666666777666666


Q ss_pred             HHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHhhhcCCh
Q 002729          395 YIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSW  456 (887)
Q Consensus       395 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~  456 (887)
                      |...--.+-.....-+.+-..+...|++.-+...+...+...-++-.-...++......|.+
T Consensus       496 y~tLdIK~IQ~DTlgh~~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~y  557 (932)
T KOG2053|consen  496 YKTLDIKNIQTDTLGHLIFRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGAY  557 (932)
T ss_pred             HHhcchHHhhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCch
Confidence            65432111111112233344445556666666666666666544444444444444444443

>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases

Probab=99.35  E-value=1e-11  Score=135.97  Aligned_cols=309  Identities=10%  Similarity=0.085  Sum_probs=178.8

Q ss_pred             eeeeecCCCCCCh---hHHhhhHHhhcCCCCCcEEEEEecCCCCChHHHHHHHhhcCceEECCCC----------CHHHH
Q 002729          538 RVGYVSSDFGNHP---LSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAM----------SSDMI  604 (887)
Q Consensus       538 riGyvs~d~~~h~---~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~  604 (887)
                      ||.++++++.-+.   +..++..+.+.+.+.++||.+++........ ...... . +++.+...          ....+
T Consensus         1 ~i~~i~~~~~~~~~gG~~~~~~~la~~L~~~g~~v~v~~~~~~~~~~-~~~~~~-i-~~~~~~~~~~~~~~~~~~~~~~~   77 (363)
T cd04955           1 KIAIIGTRGIPAKYGGFETFVEELAPRLVARGHEVTVYCRSPYPKQK-ETEYNG-V-RLIHIPAPEIGGLGTIIYDILAI   77 (363)
T ss_pred             CeEEEecCcCCcccCcHHHHHHHHHHHHHhcCCCEEEEEccCCCCCc-ccccCC-c-eEEEcCCCCccchhhhHHHHHHH
Confidence            5788876643222   2356777788888888898888765433221 000111 1 11111110          01112


Q ss_pred             HHHH-HhCCCeEEEecCCcCCCCchhhhhcCCCceEEeccccCCCC---CCCc---------ccEEEecCccCCCCcCC-
Q 002729          605 AKLI-NEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTT---GASY---------IDYLVTDEFVSPLRYAH-  670 (887)
Q Consensus       605 ~~~i-~~~~~dil~~~~~~~~~~~~~~~~~r~apvq~~~~g~~~t~---g~~~---------~d~~~~d~~~~p~~~~~-  670 (887)
                      ...+ ...++|+++.....+ ..-..++..+..|+.++.-|..-..   +...         .-+..+|.++.++.... 
T Consensus        78 ~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~  156 (363)
T cd04955          78 LHALFVKRDIDHVHALGPAI-APFLPLLRLKGKKVVVNMDGLEWKRAKWGRPAKRYLKFGEKLAVKFADRLIADSPGIKE  156 (363)
T ss_pred             HHHHhccCCeEEEEecCccH-HHHHHHHHhcCCCEEEEccCcceeecccccchhHHHHHHHHHHHhhccEEEeCCHHHHH
Confidence            2222 256788887655443 1112334445678888765542111   0000         01123344444443221 


Q ss_pred             ----CCccceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCC--CCCCCHHHHHHHHHHHhhcCCce
Q 002729          671 ----IYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQ--LYKMDPEIFNTWCNILRRVPNSA  744 (887)
Q Consensus       671 ----~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~--~~k~~~~~~~~~~~il~~~p~~~  744 (887)
                          .|..+...+|++......        .+ ....+..++++++.+ ++++++  ..|..+.+++++.++..   +.+
T Consensus       157 ~~~~~~~~~~~~i~ngv~~~~~--------~~-~~~~~~~~~~~~~~~-i~~~G~~~~~Kg~~~li~a~~~l~~---~~~  223 (363)
T cd04955         157 YLKEKYGRDSTYIPYGADHVVS--------SE-EDEILKKYGLEPGRY-YLLVGRIVPENNIDDLIEAFSKSNS---GKK  223 (363)
T ss_pred             HHHHhcCCCCeeeCCCcChhhc--------ch-hhhhHHhcCCCCCcE-EEEEecccccCCHHHHHHHHHhhcc---Cce
Confidence                122222445543221110        00 011233455544432 334444  46999999999987643   689


Q ss_pred             EEEecCChhhHHHHHHHHH-HcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCC-CC-chhHHHHHHhCCceeeeccc
Q 002729          745 LWLLRFPAAGEMRLRAYAV-AQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLC-NA-HTTGTDILWAGLPMITLPLE  821 (887)
Q Consensus       745 l~~~~~~~~~~~~l~~~~~-~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~-~g-~~t~~eal~~gvPvvt~~g~  821 (887)
                      |+++|.++. ...+.+.+. ..+. .++|+|.|.++.++....+..+|+++-|... +| |++++|||++|+||||-...
T Consensus       224 l~ivG~~~~-~~~~~~~~~~~~~~-~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~  301 (363)
T cd04955         224 LVIVGNADH-NTPYGKLLKEKAAA-DPRIIFVGPIYDQELLELLRYAALFYLHGHSVGGTNPSLLEAMAYGCPVLASDNP  301 (363)
T ss_pred             EEEEcCCCC-cchHHHHHHHHhCC-CCcEEEccccChHHHHHHHHhCCEEEeCCccCCCCChHHHHHHHcCCCEEEecCC
Confidence            999997654 334444444 5677 5889999999999999999999999999666 66 99999999999999987655


Q ss_pred             chhhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 002729          822 KMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVR  874 (887)
Q Consensus       822 ~~~~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~~  874 (887)
                      ...+-+.        -.+ ++....+.+.+...++.+|++.+.+++.+.++..
T Consensus       302 ~~~e~~~--------~~g-~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~  345 (363)
T cd04955         302 FNREVLG--------DKA-IYFKVGDDLASLLEELEADPEEVSAMAKAARERI  345 (363)
T ss_pred             ccceeec--------CCe-eEecCchHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            4444332        233 4444445588999999999999999988887654

Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog

>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed

Probab=99.34  E-value=1.1e-11  Score=137.90  Aligned_cols=258  Identities=11%  Similarity=0.064  Sum_probs=155.1

Q ss_pred             CHHHHHHHHHhCCCeEEEecCCcCCCCchhhhhcCCCceEEeccccCCCC-------------CCCcccEEEecCccCCC
Q 002729          600 SSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTT-------------GASYIDYLVTDEFVSPL  666 (887)
Q Consensus       600 ~~~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~~r~apvq~~~~g~~~t~-------------g~~~~d~~~~d~~~~p~  666 (887)
                      ....+.+.|+..++||++-.....-.+-+.....+..|+.++.-.....+             -...+|.+++     ++
T Consensus       112 ~~~~~~~~l~~~~Pd~v~~~~~~~~~~~l~~~~~~~ip~vl~~~~~~~~s~~~~~~~~~~~r~~~~~~d~ii~-----~S  186 (425)
T PRK05749        112 LPGAVRRFLRFWRPKLVIIMETELWPNLIAELKRRGIPLVLANARLSERSFKRYQKFKRFYRLLFKNIDLVLA-----QS  186 (425)
T ss_pred             cHHHHHHHHHhhCCCEEEEEecchhHHHHHHHHHCCCCEEEEeccCChhhHHHHHHHHHHHHHHHHhCCEEEE-----CC
Confidence            35788888999999999865444333333333445678776421111100             0123455444     32


Q ss_pred             CcCCC-------CccceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHHHHHHhh
Q 002729          667 RYAHI-------YSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILRR  739 (887)
Q Consensus       667 ~~~~~-------~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~il~~  739 (887)
                      +....       -.+ +..+|+..+...+.    +.........|..++ ++ ..++++.++..|....++++|.++++.
T Consensus       187 ~~~~~~l~~~g~~~~-i~vi~n~~~d~~~~----~~~~~~~~~~r~~~~-~~-~~vil~~~~~~~~~~~ll~A~~~l~~~  259 (425)
T PRK05749        187 EEDAERFLALGAKNE-VTVTGNLKFDIEVP----PELAARAATLRRQLA-PN-RPVWIAASTHEGEEELVLDAHRALLKQ  259 (425)
T ss_pred             HHHHHHHHHcCCCCC-cEecccccccCCCC----hhhHHHHHHHHHHhc-CC-CcEEEEeCCCchHHHHHHHHHHHHHHh
Confidence            22111       112 44455421110000    000000011344555 43 344444556667778889999999988


Q ss_pred             cCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCC------------CcHHHHHhccCCcEEec-C-CCCCCchhH
Q 002729          740 VPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVA------------MKQEHIRRSSLADLFLD-T-PLCNAHTTG  805 (887)
Q Consensus       740 ~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~------------~~~~~~~~~~~~d~~ld-~-~~~~g~~t~  805 (887)
                      .|+.+|+|+|.++...+.+++.+++.|+.  .+.|.+..            ...+...+|+.+||++- + +..+||.+.
T Consensus       260 ~~~~~liivG~g~~r~~~l~~~~~~~gl~--~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~aDi~~v~~S~~e~~g~~~  337 (425)
T PRK05749        260 FPNLLLILVPRHPERFKEVEELLKKAGLS--YVRRSQGEPPSADTDVLLGDTMGELGLLYAIADIAFVGGSLVKRGGHNP  337 (425)
T ss_pred             CCCcEEEEcCCChhhHHHHHHHHHhCCCc--EEEccCCCCCCCCCcEEEEecHHHHHHHHHhCCEEEECCCcCCCCCCCH
Confidence            99999999998876346899999999984  24443311            23578889999999543 3 445679999


Q ss_pred             HHHHHhCCceeeeccc-chhhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcc
Q 002729          806 TDILWAGLPMITLPLE-KMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRL  875 (887)
Q Consensus       806 ~eal~~gvPvvt~~g~-~~~~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~~~  875 (887)
                      +|||++|+|||+-+.. .+.+-  ...+...|. - +...|.+++.+....|.+|++.++++.++.++...
T Consensus       338 lEAma~G~PVI~g~~~~~~~e~--~~~~~~~g~-~-~~~~d~~~La~~l~~ll~~~~~~~~m~~~a~~~~~  404 (425)
T PRK05749        338 LEPAAFGVPVISGPHTFNFKEI--FERLLQAGA-A-IQVEDAEDLAKAVTYLLTDPDARQAYGEAGVAFLK  404 (425)
T ss_pred             HHHHHhCCCEEECCCccCHHHH--HHHHHHCCC-e-EEECCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            9999999999974321 12221  112222243 1 23488999999999999999999999998887653

>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases

Probab=99.32  E-value=3.7e-11  Score=132.81  Aligned_cols=161  Identities=14%  Similarity=0.079  Sum_probs=125.1

Q ss_pred             CCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHH
Q 002729          705 SDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQE  782 (887)
Q Consensus       705 ~~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~  782 (887)
                      ...+.+.+.++++++++.  .|..+.+++++.++... |+.+|+++|.++. ...+.+.....+.  ++|.|.|.++.++
T Consensus       212 ~~~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~-~~~~l~i~G~~~~-~~~~~~~~~~~~~--~~v~~~g~~~~~~  287 (394)
T cd03794         212 RKELGLDDKFVVLYAGNIGRAQGLDTLLEAAALLKDR-PDIRFLIVGDGPE-KEELKELAKALGL--DNVTFLGRVPKEE  287 (394)
T ss_pred             hhccCCCCcEEEEEecCcccccCHHHHHHHHHHHhhc-CCeEEEEeCCccc-HHHHHHHHHHcCC--CcEEEeCCCChHH
Confidence            334455667777777776  68899999999998877 8999999997765 5566666666665  6799999999999


Q ss_pred             HHHhccCCcEEecCCCCCC------chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCcccc-CCHHHHHHHHHH
Q 002729          783 HIRRSSLADLFLDTPLCNA------HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV-NSMKEYEERAVS  855 (887)
Q Consensus       783 ~~~~~~~~d~~ld~~~~~g------~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~-~~~~~y~~~a~~  855 (887)
                      ....|..+|+++-|...++      +++++|||++|+|||+........-+..      |-.+.++. .|.+++++...+
T Consensus       288 ~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~~~~------~~~g~~~~~~~~~~l~~~i~~  361 (394)
T cd03794         288 LPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAELVEE------AGAGLVVPPGDPEALAAAILE  361 (394)
T ss_pred             HHHHHHhhCeeEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchhhhcc------CCcceEeCCCCHHHHHHHHHH
Confidence            9999999999998866553      4558999999999999877665553322      22231333 489999999999


Q ss_pred             HhcCHHHHHHHHHHHHhhcc
Q 002729          856 LALDRQKLQALTNKLKSVRL  875 (887)
Q Consensus       856 l~~d~~~~~~~~~~~~~~~~  875 (887)
                      +..|++.+++++++.++...
T Consensus       362 ~~~~~~~~~~~~~~~~~~~~  381 (394)
T cd03794         362 LLDDPEERAEMGENGRRYVE  381 (394)
T ss_pred             HHhChHHHHHHHHHHHHHHH
Confidence            99999999999988876543

wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.32  E-value=5.1e-11  Score=122.26  Aligned_cols=254  Identities=15%  Similarity=0.121  Sum_probs=110.1

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCC-CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 002729            6 AHQMYKSGSYKQALEHSNSVYERNP-LRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDID   84 (887)
Q Consensus         6 a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~   84 (887)
                      .+.+|-.|+|.+++...+ ....++ ...+....+.+++..+|+++..+.....   ..+....+...++..+...++-+
T Consensus         8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e   83 (290)
T PF04733_consen    8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKE   83 (290)
T ss_dssp             HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHH
T ss_pred             HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchH
Confidence            445566677777766555 222222 2344555666666666666655443322   11222333344444443333444


Q ss_pred             HHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002729           85 LAIRYYLVAIELR--PNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEAL  162 (887)
Q Consensus        85 ~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  162 (887)
                      .++..++..+...  +.++......|.++...|++++|++.+.+.     .+.+.......++...++++.|.+.++.+.
T Consensus        84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~  158 (290)
T PF04733_consen   84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQ  158 (290)
T ss_dssp             CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4444444333221  123333444445555555555555555432     334444445555555555555555555554


Q ss_pred             hhCCChHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHH
Q 002729          163 RIQPTFAIAWSNLAGLFMESG--DLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAF  239 (887)
Q Consensus       163 ~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~  239 (887)
                      +.+.+...+....+.+....|  ++.+|..+|+++.+..+.++..++.++.++..+|++++|.+.++++++.+|+ ..++
T Consensus       159 ~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L  238 (290)
T PF04733_consen  159 QIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL  238 (290)
T ss_dssp             CCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred             hcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence            444444333333333333332  3444444444444444444444444444444444444444444444444433 3344


Q ss_pred             hhHHHHHHHcCCh-HHHHHHHHHHHhcCCC
Q 002729          240 GNLASTYYERGQA-DMAILYYKQAIGCDPR  268 (887)
Q Consensus       240 ~~la~~~~~~g~~-~~A~~~~~~~l~~~p~  268 (887)
                      .+++.+....|+. +.+.+++.++...+|+
T Consensus       239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~  268 (290)
T PF04733_consen  239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPN  268 (290)
T ss_dssp             HHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence            4444444444433 3333333333333443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.31  E-value=4.9e-11  Score=109.39  Aligned_cols=118  Identities=20%  Similarity=0.248  Sum_probs=100.8

Q ss_pred             HHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002729          325 SYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT  404 (887)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  404 (887)
                      ..|++++..+|++......++..+...|++++|+..++++++.+|.++.++..+|.++...|++++|...++++++.+|+
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            35677777888887778888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHH
Q 002729          405 MAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA  442 (887)
Q Consensus       405 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  442 (887)
                      ++..++.+|.++...|++++|+..|+++++++|++...
T Consensus        84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  121 (135)
T TIGR02552        84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY  121 (135)
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence            88888888888888899999999999988888877653

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.31  E-value=2.3e-11  Score=118.12  Aligned_cols=109  Identities=32%  Similarity=0.483  Sum_probs=98.8

Q ss_pred             HhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCC
Q 002729          341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG  420 (887)
Q Consensus       341 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  420 (887)
                      +..-|.-+.+.++|.+|+..|.++++++|.++..|.+++.+|.++|.++.|++.++.++.++|....+|..||.+|..+|
T Consensus        84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g  163 (304)
T KOG0553|consen   84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG  163 (304)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC
Confidence            44557778888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCChHHHHHHHHH
Q 002729          421 HVEAAIKSYKQALLLRPDFPEATCNLLHT  449 (887)
Q Consensus       421 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~  449 (887)
                      ++++|++.|+++++++|++.....+|-.+
T Consensus       164 k~~~A~~aykKaLeldP~Ne~~K~nL~~A  192 (304)
T KOG0553|consen  164 KYEEAIEAYKKALELDPDNESYKSNLKIA  192 (304)
T ss_pred             cHHHHHHHHHhhhccCCCcHHHHHHHHHH
Confidence            99999999999999999998776665443

>PLN02316 synthase/transferase

Probab=99.30  E-value=2.3e-11  Score=141.60  Aligned_cols=169  Identities=12%  Similarity=-0.036  Sum_probs=115.7

Q ss_pred             CCCCCCCCC-CcEEEEecCCCC--CCCHHHHHHHHHHHhhcCCceEEEecCChhh--HHHHHHHHHHcCCC-CCcEEEcC
Q 002729          703 KRSDYGLPE-DKFIFACFNQLY--KMDPEIFNTWCNILRRVPNSALWLLRFPAAG--EMRLRAYAVAQGVQ-PDQIIFTD  776 (887)
Q Consensus       703 ~r~~~~l~~-~~~~~~~~~~~~--k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~--~~~l~~~~~~~g~~-~~r~~~~~  776 (887)
                      .|.++||+. +.+++++++|+.  |-.+.+++++.++++  ++.+|+|+|.||..  +..+++.+.++|+. ++||.|.+
T Consensus       829 Lr~~lGL~~~d~plVg~VGRL~~qKGvdlLi~Al~~ll~--~~~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g  906 (1036)
T PLN02316        829 LQQRLGLKQADLPLVGIITRLTHQKGIHLIKHAIWRTLE--RNGQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCL  906 (1036)
T ss_pred             HHHHhCCCcccCeEEEEEeccccccCHHHHHHHHHHHhh--cCcEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEe
Confidence            467899984 678999999984  899999999999986  47899999977542  46788888888874 68999987


Q ss_pred             CCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHH-------HHHhcCCCCcccc--CCH
Q 002729          777 VAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGS-------LCLATGLGEEMIV--NSM  846 (887)
Q Consensus       777 ~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~-------~l~~~g~~~~~~~--~~~  846 (887)
                      ..+...-..+|+.+|+||-|+-+.+ |+|.+|||++|+|+|+.....++.-|...       -....|-++ ++.  .|+
T Consensus       907 ~~de~lah~iyaaADiflmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tG-flf~~~d~  985 (1036)
T PLN02316        907 TYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNG-FSFDGADA  985 (1036)
T ss_pred             cCCHHHHHHHHHhCcEEEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCce-EEeCCCCH
Confidence            6543322368999999999988888 99999999999866643333333322110       000012344 444  367


Q ss_pred             HHHHHHHHHHhcC-HHHHHHHHHHHHhhc
Q 002729          847 KEYEERAVSLALD-RQKLQALTNKLKSVR  874 (887)
Q Consensus       847 ~~y~~~a~~l~~d-~~~~~~~~~~~~~~~  874 (887)
                      +++.....++..+ .+.+..+++..+..+
T Consensus       986 ~aLa~AL~raL~~~~~~~~~~~~~~r~~m 1014 (1036)
T PLN02316        986 AGVDYALNRAISAWYDGRDWFNSLCKRVM 1014 (1036)
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence            7777766666654 344444455554443

>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases

Probab=99.28  E-value=9.8e-11  Score=127.27  Aligned_cols=142  Identities=14%  Similarity=0.094  Sum_probs=105.3

Q ss_pred             CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCc
Q 002729          712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD  791 (887)
Q Consensus       712 ~~~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d  791 (887)
                      ..++|.+.-...|..+.+++++.++    | .+|+|+|.++. .+.+++     +. .++|.|.|.++.++...+|..+|
T Consensus       196 ~~il~~G~~~~~K~~~~li~a~~~~----~-~~l~ivG~g~~-~~~l~~-----~~-~~~V~~~g~~~~~~~~~~~~~ad  263 (351)
T cd03804         196 DYYLSVGRLVPYKRIDLAIEAFNKL----G-KRLVVIGDGPE-LDRLRA-----KA-GPNVTFLGRVSDEELRDLYARAR  263 (351)
T ss_pred             CEEEEEEcCccccChHHHHHHHHHC----C-CcEEEEECChh-HHHHHh-----hc-CCCEEEecCCCHHHHHHHHHhCC
Confidence            3455555555679999999988653    5 78999998765 445544     44 58999999999999999999999


Q ss_pred             EEecCCCCCCchhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCcccc-CCHHHHHHHHHHHhcCH-HHHHHHHHH
Q 002729          792 LFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV-NSMKEYEERAVSLALDR-QKLQALTNK  869 (887)
Q Consensus       792 ~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~-~~~~~y~~~a~~l~~d~-~~~~~~~~~  869 (887)
                      +++-|...+-|++.+|||+||+|||+.......+-+..      |-.+.++. .|.+++++....+.+|+ ..++++++.
T Consensus       264 ~~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~~~e~i~~------~~~G~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~  337 (351)
T cd03804         264 AFLFPAEEDFGIVPVEAMASGTPVIAYGKGGALETVID------GVTGILFEEQTVESLAAAVERFEKNEDFDPQAIRAH  337 (351)
T ss_pred             EEEECCcCCCCchHHHHHHcCCCEEEeCCCCCcceeeC------CCCEEEeCCCCHHHHHHHHHHHHhCcccCHHHHHHH
Confidence            99999774449999999999999998765444442221      33441332 68899999999999988 555666555


Q ss_pred             HH
Q 002729          870 LK  871 (887)
Q Consensus       870 ~~  871 (887)
                      .+
T Consensus       338 ~~  339 (351)
T cd03804         338 AE  339 (351)
T ss_pred             HH
Confidence            43

wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.28  E-value=1.1e-10  Score=106.92  Aligned_cols=116  Identities=15%  Similarity=0.161  Sum_probs=84.0

Q ss_pred             HHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 002729           21 HSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF  100 (887)
Q Consensus        21 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  100 (887)
                      .+++++..+|++....+.+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..++++++.+|.+
T Consensus         5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~   84 (135)
T TIGR02552         5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD   84 (135)
T ss_pred             hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            46666777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH
Q 002729          101 ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVD  136 (887)
Q Consensus       101 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~  136 (887)
                      +..++.+|.++...|++++|+..++++++.+|++..
T Consensus        85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552        85 PRPYFHAAECLLALGEPESALKALDLAIEICGENPE  120 (135)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence            777777777777777777777777777777766554

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases

Probab=99.28  E-value=3.8e-11  Score=134.99  Aligned_cols=161  Identities=13%  Similarity=0.152  Sum_probs=125.0

Q ss_pred             CCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEecCChh---hHHHHHHHHHHcCCCCCcEEEcCCCCcHHHH
Q 002729          710 PEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAA---GEMRLRAYAVAQGVQPDQIIFTDVAMKQEHI  784 (887)
Q Consensus       710 ~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~---~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~  784 (887)
                      +.+.++++.++++  .|..+.+++++..+.+..|+.+|+|+|.++.   ..+.+++.+++.|+ .++|.|.|   ..+..
T Consensus       290 ~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l-~~~V~f~G---~~~v~  365 (475)
T cd03813         290 EKEPPVVGLIGRVVPIKDIKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLGL-EDNVKFTG---FQNVK  365 (475)
T ss_pred             CCCCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhCC-CCeEEEcC---CccHH
Confidence            3455777777776  5889999999999999999999999997642   24577888899999 69999999   45667


Q ss_pred             HhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHH
Q 002729          785 RRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQ  861 (887)
Q Consensus       785 ~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~--~~~~~y~~~a~~l~~d~~  861 (887)
                      .+|+.+|+++-|+-..| |++++|||++|+|||+-....+.+-+...--...|-.+ ++.  .|.+++.+...++.+|++
T Consensus       366 ~~l~~aDv~vlpS~~Eg~p~~vlEAma~G~PVVatd~g~~~elv~~~~~~~~g~~G-~lv~~~d~~~la~ai~~ll~~~~  444 (475)
T cd03813         366 EYLPKLDVLVLTSISEGQPLVILEAMAAGIPVVATDVGSCRELIEGADDEALGPAG-EVVPPADPEALARAILRLLKDPE  444 (475)
T ss_pred             HHHHhCCEEEeCchhhcCChHHHHHHHcCCCEEECCCCChHHHhcCCcccccCCce-EEECCCCHHHHHHHHHHHhcCHH
Confidence            77899999999976666 99999999999999986554444432210000123455 444  689999999999999999


Q ss_pred             HHHHHHHHHHhhcc
Q 002729          862 KLQALTNKLKSVRL  875 (887)
Q Consensus       862 ~~~~~~~~~~~~~~  875 (887)
                      .++++++..+++..
T Consensus       445 ~~~~~~~~a~~~v~  458 (475)
T cd03813         445 LRRAMGEAGRKRVE  458 (475)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999998887654

Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog

>PRK13609 diacylglycerol glucosyltransferase; Provisional

Probab=99.27  E-value=1e-10  Score=128.31  Aligned_cols=248  Identities=13%  Similarity=0.058  Sum_probs=143.6

Q ss_pred             HHHHHHHHhCCCeEEEecCCcCCCCchhhh-hcC--CCceEE--eccccCCCCCCCcccEEEecCccCCCC--cCCCCcc
Q 002729          602 DMIAKLINEDKIQILINLNGYTKGARNEIF-AMQ--PAPIQV--SYMGFPGTTGASYIDYLVTDEFVSPLR--YAHIYSE  674 (887)
Q Consensus       602 ~~~~~~i~~~~~dil~~~~~~~~~~~~~~~-~~r--~apvq~--~~~g~~~t~g~~~~d~~~~d~~~~p~~--~~~~~~e  674 (887)
                      ..+.+.|++.++||+|-..+..   ..+.+ +.+  .-|+-.  |.+|.+...-.+..|.+++-.-..-..  ..+...+
T Consensus        94 ~~l~~~l~~~~pD~Vi~~~~~~---~~~~~~~~~~~~ip~~~~~td~~~~~~~~~~~ad~i~~~s~~~~~~l~~~gi~~~  170 (380)
T PRK13609         94 KRLKLLLQAEKPDIVINTFPII---AVPELKKQTGISIPTYNVLTDFCLHKIWVHREVDRYFVATDHVKKVLVDIGVPPE  170 (380)
T ss_pred             HHHHHHHHHhCcCEEEEcChHH---HHHHHHHhcCCCCCeEEEeCCCCCCcccccCCCCEEEECCHHHHHHHHHcCCChh
Confidence            5678899999999998432221   12222 222  245542  223333333345666665521100000  0112234


Q ss_pred             ceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCc-EEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEecC-
Q 002729          675 KLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDK-FIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRF-  750 (887)
Q Consensus       675 ~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~-~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~-  750 (887)
                      ++..++..... .+.      .+......|..+|++++. +++...++.  .|....+++.+.    ..|+.+++++++ 
T Consensus       171 ki~v~G~p~~~-~f~------~~~~~~~~~~~~~l~~~~~~il~~~G~~~~~k~~~~li~~l~----~~~~~~~viv~G~  239 (380)
T PRK13609        171 QVVETGIPIRS-SFE------LKINPDIIYNKYQLCPNKKILLIMAGAHGVLGNVKELCQSLM----SVPDLQVVVVCGK  239 (380)
T ss_pred             HEEEECcccCh-HHc------CcCCHHHHHHHcCCCCCCcEEEEEcCCCCCCcCHHHHHHHHh----hCCCcEEEEEeCC
Confidence            55544321100 000      001112256778997654 444433443  366666666553    348888877643 


Q ss_pred             ChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCCchhHHHHHHhCCceeeecccchhhhhHHH
Q 002729          751 PAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGS  830 (887)
Q Consensus       751 ~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~~~r~~~~  830 (887)
                      ++...+.+++.....+   ++|+|.|.++  +...+|..+|+++.   -+||.|++|||++|+|||+.....-.....+.
T Consensus       240 ~~~~~~~l~~~~~~~~---~~v~~~g~~~--~~~~l~~~aD~~v~---~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~  311 (380)
T PRK13609        240 NEALKQSLEDLQETNP---DALKVFGYVE--NIDELFRVTSCMIT---KPGGITLSEAAALGVPVILYKPVPGQEKENAM  311 (380)
T ss_pred             CHHHHHHHHHHHhcCC---CcEEEEechh--hHHHHHHhccEEEe---CCCchHHHHHHHhCCCEEECCCCCCcchHHHH
Confidence            3333567777666554   6899999875  34567889999983   46789999999999999985311111222223


Q ss_pred             HHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 002729          831 LCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSV  873 (887)
Q Consensus       831 ~l~~~g~~~~~~~~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~  873 (887)
                      .+...|. . ++..+.++..+...++.+|++.+++++++.++.
T Consensus       312 ~~~~~G~-~-~~~~~~~~l~~~i~~ll~~~~~~~~m~~~~~~~  352 (380)
T PRK13609        312 YFERKGA-A-VVIRDDEEVFAKTEALLQDDMKLLQMKEAMKSL  352 (380)
T ss_pred             HHHhCCc-E-EEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHh
Confidence            4444455 2 456899999999999999999999999888763

>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases

Probab=99.26  E-value=8.6e-11  Score=129.39  Aligned_cols=157  Identities=13%  Similarity=0.117  Sum_probs=123.9

Q ss_pred             CCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCc--eEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHh
Q 002729          711 EDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNS--ALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRR  786 (887)
Q Consensus       711 ~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~--~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~  786 (887)
                      ++.+++++++++  .|..+.+++++.++.+..|+.  ++.++|.++. ...+++.++..+. .++|.|+|.++..+....
T Consensus       228 ~~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g~~-~~~l~~~~~~~~~-~~~V~f~G~v~~~e~~~~  305 (407)
T cd04946         228 DDTLRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIKWTHIGGGPL-EDTLKELAESKPE-NISVNFTGELSNSEVYKL  305 (407)
T ss_pred             CCCEEEEEeeccccccCHHHHHHHHHHHHHhCCCceEEEEEEeCchH-HHHHHHHHHhcCC-CceEEEecCCChHHHHHH
Confidence            345667777765  588999999999999988755  4566777765 6678888877777 689999999999998888


Q ss_pred             ccC--CcEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHH
Q 002729          787 SSL--ADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQ  861 (887)
Q Consensus       787 ~~~--~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~--~~~~~y~~~a~~l~~d~~  861 (887)
                      |..  +|+++-|+.+.| |++++|||++|+|||+-......+-+..      |.++.++.  .|.+++++...++..|++
T Consensus       306 ~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vgg~~e~i~~------~~~G~l~~~~~~~~~la~~I~~ll~~~~  379 (407)
T cd04946         306 YKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVGGTPEIVDN------GGNGLLLSKDPTPNELVSSLSKFIDNEE  379 (407)
T ss_pred             HhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCCCcHHHhcC------CCcEEEeCCCCCHHHHHHHHHHHHhCHH
Confidence            864  899999988888 9999999999999997654444443322      43451333  378999999999999999


Q ss_pred             HHHHHHHHHHhhcc
Q 002729          862 KLQALTNKLKSVRL  875 (887)
Q Consensus       862 ~~~~~~~~~~~~~~  875 (887)
                      .+.+|+++.|+...
T Consensus       380 ~~~~m~~~ar~~~~  393 (407)
T cd04946         380 EYQTMREKAREKWE  393 (407)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999888654

AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.

>TIGR02470 sucr_synth sucrose synthase

Probab=99.26  E-value=8.3e-11  Score=133.79  Aligned_cols=162  Identities=14%  Similarity=0.112  Sum_probs=119.4

Q ss_pred             CCCCC--CCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEecCChh-----------hHHHHHHHHHHcCCCC
Q 002729          705 SDYGL--PEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAA-----------GEMRLRAYAVAQGVQP  769 (887)
Q Consensus       705 ~~~~l--~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~-----------~~~~l~~~~~~~g~~~  769 (887)
                      ..+|+  +.+.+++++.+|+  .|..+.++++|.++....+++.|+|+|+++.           ...++++.+.+.|+ .
T Consensus       540 ~~~G~l~d~~kpiIl~VGRL~~~KGid~LIeA~~~l~~l~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL-~  618 (784)
T TIGR02470       540 EHYGYLKDPNKPIIFSMARLDRVKNLTGLVECYGRSPKLRELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQL-H  618 (784)
T ss_pred             HHhCCCCCCCCcEEEEEeCCCccCCHHHHHHHHHHhHhhCCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCC-C
Confidence            45665  4566778888887  5999999999988765556789999986532           12467788899999 5


Q ss_pred             CcEEEcCCC-CcHH---HHHhcc-CCcEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCcccc
Q 002729          770 DQIIFTDVA-MKQE---HIRRSS-LADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV  843 (887)
Q Consensus       770 ~r~~~~~~~-~~~~---~~~~~~-~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~  843 (887)
                      ++|.|+|.. +..+   ....+. .+|||+-|..+.+ |.|.+|||+||+|||+-......+-+..      |.++ ++.
T Consensus       619 g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~GG~~EiV~d------g~tG-fLV  691 (784)
T TIGR02470       619 GQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRFGGPLEIIQD------GVSG-FHI  691 (784)
T ss_pred             CeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCCCCHHHHhcC------CCcE-EEe
Confidence            999999964 4433   343333 4689999988888 9999999999999996554444443321      6666 555


Q ss_pred             --CCHHHHHHHHHHHh----cCHHHHHHHHHHHHhhc
Q 002729          844 --NSMKEYEERAVSLA----LDRQKLQALTNKLKSVR  874 (887)
Q Consensus       844 --~~~~~y~~~a~~l~----~d~~~~~~~~~~~~~~~  874 (887)
                        .|.+++.+...++.    .|++.+.+++.+.+++.
T Consensus       692 dp~D~eaLA~aL~~ll~kll~dp~~~~~ms~~a~~rV  728 (784)
T TIGR02470       692 DPYHGEEAAEKIVDFFEKCDEDPSYWQKISQGGLQRI  728 (784)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence              47888888877664    79999999998877653

This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.

>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated

Probab=99.25  E-value=7.1e-11  Score=130.29  Aligned_cols=148  Identities=8%  Similarity=0.063  Sum_probs=108.1

Q ss_pred             CCcEEEEecCC--CCCCCHHHH----HHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHH
Q 002729          711 EDKFIFACFNQ--LYKMDPEIF----NTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHI  784 (887)
Q Consensus       711 ~~~~~~~~~~~--~~k~~~~~~----~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~  784 (887)
                      .+.++++..++  ..|+.+.++    ++|..+.+..|+.+|+|+|.++. . .    .++.+. .++|.|+|.++  +..
T Consensus       222 ~~~~~ilf~G~l~~~k~~~~l~~~~~~~~~~l~~~~p~~~l~ivG~g~~-~-~----~~~l~~-~~~V~~~G~v~--~~~  292 (397)
T TIGR03087       222 PGKRVLVFTGAMDYWPNIDAVVWFAERVFPAVRARRPAAEFYIVGAKPS-P-A----VRALAA-LPGVTVTGSVA--DVR  292 (397)
T ss_pred             CCCcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHCCCcEEEEECCCCh-H-H----HHHhcc-CCCeEEeeecC--CHH
Confidence            34445555555  468877776    67888888899999999998764 2 2    233444 46799999887  457


Q ss_pred             HhccCCcEEecCCCC-CC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHH
Q 002729          785 RRSSLADLFLDTPLC-NA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQK  862 (887)
Q Consensus       785 ~~~~~~d~~ld~~~~-~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l~~d~~~  862 (887)
                      .+|+.+|+++-|+.. +| +++++|||+||+|||+....       ...+...+-.+.++..|.+++++...++.+|++.
T Consensus       293 ~~~~~adv~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~-------~~~i~~~~~~g~lv~~~~~~la~ai~~ll~~~~~  365 (397)
T TIGR03087       293 PYLAHAAVAVAPLRIARGIQNKVLEAMAMAKPVVASPEA-------AEGIDALPGAELLVAADPADFAAAILALLANPAE  365 (397)
T ss_pred             HHHHhCCEEEecccccCCcccHHHHHHHcCCCEEecCcc-------cccccccCCcceEeCCCHHHHHHHHHHHHcCHHH
Confidence            788999999999753 44 77899999999999986531       0011111112315668999999999999999999


Q ss_pred             HHHHHHHHHhhc
Q 002729          863 LQALTNKLKSVR  874 (887)
Q Consensus       863 ~~~~~~~~~~~~  874 (887)
                      +++++++.|+..
T Consensus       366 ~~~~~~~ar~~v  377 (397)
T TIGR03087       366 REELGQAARRRV  377 (397)
T ss_pred             HHHHHHHHHHHH
Confidence            999999888764

Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.

>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant

Probab=99.25  E-value=8.8e-11  Score=136.30  Aligned_cols=159  Identities=10%  Similarity=0.032  Sum_probs=123.1

Q ss_pred             CCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhh--cCCceEEEecCChhh----------HHHHHHHHHHcCCCCCcE
Q 002729          707 YGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRR--VPNSALWLLRFPAAG----------EMRLRAYAVAQGVQPDQI  772 (887)
Q Consensus       707 ~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~--~p~~~l~~~~~~~~~----------~~~l~~~~~~~g~~~~r~  772 (887)
                      ++.+.+.+++++++|+  .|..+.+++++..+...  .|+.+ +|+|.++..          ...+...+...|+ .++|
T Consensus       473 ~~~~pdkpvIL~VGRL~p~KGi~~LIeAf~~L~~l~~~~nL~-LIiG~gdd~d~l~~~~~~~l~~L~~li~~lgL-~g~V  550 (1050)
T TIGR02468       473 FFTNPRKPMILALARPDPKKNITTLVKAFGECRPLRELANLT-LIMGNRDDIDEMSSGSSSVLTSVLKLIDKYDL-YGQV  550 (1050)
T ss_pred             hcccCCCcEEEEEcCCccccCHHHHHHHHHHhHhhccCCCEE-EEEecCchhhhhhccchHHHHHHHHHHHHhCC-CCeE
Confidence            3445566677777776  59999999999988653  45555 345654321          2467788899999 6999


Q ss_pred             EEcCCCCcHHHHHhccCC----cEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCcccc--CC
Q 002729          773 IFTDVAMKQEHIRRSSLA----DLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NS  845 (887)
Q Consensus       773 ~~~~~~~~~~~~~~~~~~----d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~--~~  845 (887)
                      .|.|..+..+...+|+.+    |||+-|..+.| |+|++|||+||+|||+-......+-+      .-|.++ +++  .|
T Consensus       551 ~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG~~EII------~~g~nG-lLVdP~D  623 (1050)
T TIGR02468       551 AYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGGPVDIH------RVLDNG-LLVDPHD  623 (1050)
T ss_pred             EecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCCcHHHh------ccCCcE-EEECCCC
Confidence            999999999998999877    69999988888 99999999999999976544444322      125666 555  58


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 002729          846 MKEYEERAVSLALDRQKLQALTNKLKSVR  874 (887)
Q Consensus       846 ~~~y~~~a~~l~~d~~~~~~~~~~~~~~~  874 (887)
                      .+++.+...++..|++.++++++..+++.
T Consensus       624 ~eaLA~AL~~LL~Dpelr~~m~~~gr~~v  652 (1050)
T TIGR02468       624 QQAIADALLKLVADKQLWAECRQNGLKNI  652 (1050)
T ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence            99999999999999999999998887664

Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.

>TIGR02918 accessory Sec system glycosylation protein GtfA

Probab=99.24  E-value=9.7e-11  Score=130.49  Aligned_cols=147  Identities=12%  Similarity=0.096  Sum_probs=115.7

Q ss_pred             EEEEecCC--CCCCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCc
Q 002729          714 FIFACFNQ--LYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD  791 (887)
Q Consensus       714 ~~~~~~~~--~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d  791 (887)
                      +++++++|  ..|..+.++++|.++.+..|+.+|.|+|.++. .+.|++.+++.|+ .++|.|.|..+   ....|+.+|
T Consensus       320 ~~il~vGrl~~~Kg~~~li~A~~~l~~~~p~~~l~i~G~G~~-~~~l~~~i~~~~l-~~~V~f~G~~~---~~~~~~~ad  394 (500)
T TIGR02918       320 FSIITASRLAKEKHIDWLVKAVVKAKKSVPELTFDIYGEGGE-KQKLQKIINENQA-QDYIHLKGHRN---LSEVYKDYE  394 (500)
T ss_pred             eEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEECchh-HHHHHHHHHHcCC-CCeEEEcCCCC---HHHHHHhCC
Confidence            34445555  46999999999999999999999999998876 6789999999999 68999999764   445678899


Q ss_pred             EEecCCCCCC-chhHHHHHHhCCceeeeccc-chhhhhHHHHHHhcCCCCccccC------C----HHHHHHHHHHHhcC
Q 002729          792 LFLDTPLCNA-HTTGTDILWAGLPMITLPLE-KMATRVAGSLCLATGLGEEMIVN------S----MKEYEERAVSLALD  859 (887)
Q Consensus       792 ~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~-~~~~r~~~~~l~~~g~~~~~~~~------~----~~~y~~~a~~l~~d  859 (887)
                      +++-|+-+.| |+|++|||++|+|||+..-. ..++-+.      -|.++ +++.      |    .+++.+...+|.+ 
T Consensus       395 v~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~G~~eiI~------~g~nG-~lv~~~~~~~d~~~~~~~la~~I~~ll~-  466 (500)
T TIGR02918       395 LYLSASTSEGFGLTLMEAVGSGLGMIGFDVNYGNPTFIE------DNKNG-YLIPIDEEEDDEDQIITALAEKIVEYFN-  466 (500)
T ss_pred             EEEEcCccccccHHHHHHHHhCCCEEEecCCCCCHHHcc------CCCCE-EEEeCCccccchhHHHHHHHHHHHHHhC-
Confidence            9999987788 99999999999999986522 2333221      27777 6654      2    7788888888884 


Q ss_pred             HHHHHHHHHHHHhh
Q 002729          860 RQKLQALTNKLKSV  873 (887)
Q Consensus       860 ~~~~~~~~~~~~~~  873 (887)
                      ++.+.++++..++.
T Consensus       467 ~~~~~~~~~~a~~~  480 (500)
T TIGR02918       467 SNDIDAFHEYSYQI  480 (500)
T ss_pred             hHHHHHHHHHHHHH
Confidence            55688888888764

Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.24  E-value=9.3e-11  Score=114.03  Aligned_cols=120  Identities=26%  Similarity=0.385  Sum_probs=106.9

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002729           33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM  112 (887)
Q Consensus        33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  112 (887)
                      .+.+-.-|.-+.+.++|++|+..|.++|+++|.++..|.+++.+|.++|.++.|++..+.++.++|.+..+|..||.+|.
T Consensus        81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~  160 (304)
T KOG0553|consen   81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL  160 (304)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            45566778888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 002729          113 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQ  152 (887)
Q Consensus       113 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~  152 (887)
                      .+|++++|++.|+++++++|++......|..+-.+.++.+
T Consensus       161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999988888888777777666

>PLN02605 monogalactosyldiacylglycerol synthase

Probab=99.24  E-value=2.5e-10  Score=124.77  Aligned_cols=253  Identities=12%  Similarity=0.016  Sum_probs=154.0

Q ss_pred             HHHHHHHHhCCCeEEEecCCcCCCCchh--hhh-c-----CCCceEEe---ccccCCCCCCCcccEEEecC-ccCCC-Cc
Q 002729          602 DMIAKLINEDKIQILINLNGYTKGARNE--IFA-M-----QPAPIQVS---YMGFPGTTGASYIDYLVTDE-FVSPL-RY  668 (887)
Q Consensus       602 ~~~~~~i~~~~~dil~~~~~~~~~~~~~--~~~-~-----r~apvq~~---~~g~~~t~g~~~~d~~~~d~-~~~p~-~~  668 (887)
                      ..+.+.|++.++||+|-.  |...++.+  +++ +     ...|+-++   ++..-.....+.+|++++-. .+... ..
T Consensus        90 ~~l~~~i~~~~pDvIi~t--hp~~~~~~~~~l~~~~~~~~~~~p~~~~~tD~~~~~~~w~~~~~d~~~~~s~~~~~~l~~  167 (382)
T PLN02605         90 REVAKGLMKYKPDIIVSV--HPLMQHVPLRVLRWQGKELGKKIPFTTVVTDLGTCHPTWFHKGVTRCFCPSEEVAKRALK  167 (382)
T ss_pred             HHHHHHHHhcCcCEEEEe--CcCcccCHHHHHHHHhhccCCCCCEEEEECCCCCcCcccccCCCCEEEECCHHHHHHHHH
Confidence            467889999999999852  33323322  222 1     24666433   11111123346778777521 11000 01


Q ss_pred             CCCCccceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHh----hcCC
Q 002729          669 AHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILR----RVPN  742 (887)
Q Consensus       669 ~~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~----~~p~  742 (887)
                      .+...+++...|...-. .+.    . ........|.++|++++.++++.+++.  .|....+++.+..++.    ..|+
T Consensus       168 ~g~~~~ki~v~g~~v~~-~f~----~-~~~~~~~~r~~~gl~~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~  241 (382)
T PLN02605        168 RGLEPSQIRVYGLPIRP-SFA----R-AVRPKDELRRELGMDEDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPI  241 (382)
T ss_pred             cCCCHHHEEEECcccCH-hhc----c-CCCCHHHHHHHcCCCCCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCC
Confidence            12233566555432110 000    0 001122367889999887776666654  5778888888877652    2355


Q ss_pred             ce-EEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCCchhHHHHHHhCCceeeeccc
Q 002729          743 SA-LWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLE  821 (887)
Q Consensus       743 ~~-l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g~  821 (887)
                      .+ +++.|.++...+.|++    .+. .++|.|.|.++  +...+|+.+|+++.+   +||.|++|||++|+|||+..-.
T Consensus       242 ~~~~vi~G~~~~~~~~L~~----~~~-~~~v~~~G~~~--~~~~l~~aaDv~V~~---~g~~ti~EAma~g~PvI~~~~~  311 (382)
T PLN02605        242 GQVVVICGRNKKLQSKLES----RDW-KIPVKVRGFVT--NMEEWMGACDCIITK---AGPGTIAEALIRGLPIILNGYI  311 (382)
T ss_pred             ceEEEEECCCHHHHHHHHh----hcc-cCCeEEEeccc--cHHHHHHhCCEEEEC---CCcchHHHHHHcCCCEEEecCC
Confidence            54 5566655433344443    332 35799999985  567789999999963   3788999999999999987532


Q ss_pred             chhhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcC-HHHHHHHHHHHHhhc
Q 002729          822 KMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALD-RQKLQALTNKLKSVR  874 (887)
Q Consensus       822 ~~~~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l~~d-~~~~~~~~~~~~~~~  874 (887)
                      ...+..++..+...|..  +...|+++..+...++..| ++.+++|++..++..
T Consensus       312 pgqe~gn~~~i~~~g~g--~~~~~~~~la~~i~~ll~~~~~~~~~m~~~~~~~~  363 (382)
T PLN02605        312 PGQEEGNVPYVVDNGFG--AFSESPKEIARIVAEWFGDKSDELEAMSENALKLA  363 (382)
T ss_pred             CccchhhHHHHHhCCce--eecCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            22333344455555663  3458999999999999988 999999999888754

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.23  E-value=1.6e-10  Score=103.23  Aligned_cols=105  Identities=20%  Similarity=0.151  Sum_probs=95.6

Q ss_pred             hcc-CCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 002729          332 AVT-TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHA  410 (887)
Q Consensus       332 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  410 (887)
                      ... ++.-+..+.+|..+...|++++|.+.|+-+...+|.+...|+++|.++..+|++++|+..|.+++.++|+++..++
T Consensus        28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~  107 (157)
T PRK15363         28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW  107 (157)
T ss_pred             CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence            344 5556667888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHcC
Q 002729          411 NLASAYKDSGHVEAAIKSYKQALLLR  436 (887)
Q Consensus       411 ~la~~~~~~g~~~~A~~~~~~al~~~  436 (887)
                      ++|.++...|+.+.|++.|+.++...
T Consensus       108 ~ag~c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        108 AAAECYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999998875

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=99.22  E-value=1.8e-06  Score=90.45  Aligned_cols=413  Identities=15%  Similarity=0.099  Sum_probs=246.5

Q ss_pred             HHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 002729           23 NSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFAD  102 (887)
Q Consensus        23 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  102 (887)
                      ++-++.+|.+..+|+.+..-+..+ .+++..+.|++.+...|..+.+|...+......++|+.-.++|.+++...-+ .+
T Consensus        10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lD   87 (656)
T KOG1914|consen   10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LD   87 (656)
T ss_pred             HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-Hh
Confidence            566788999999999999877666 9999999999999999999999999999999999999999999999875433 55


Q ss_pred             HHHHHHHH-HHHcCChHHHHHHHHHH----HH---hCCCCHHHHHHHHHHHH---------HcCChHHHHHHHHHHHhhC
Q 002729          103 AWSNLASA-YMRKGRLNEAAQCCRQA----LA---LNPLLVDAHSNLGNLMK---------AQGLVQEAYSCYLEALRIQ  165 (887)
Q Consensus       103 ~~~~la~~-~~~~g~~~~A~~~~~~~----l~---~~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~~al~~~  165 (887)
                      .|...... -...|+...+....-++    +.   .++.....|...+..+.         .+.+.+.-.+.|++++..-
T Consensus        88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP  167 (656)
T KOG1914|consen   88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP  167 (656)
T ss_pred             HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence            55544332 22344444433333333    22   24555556666655543         2335566677788887543


Q ss_pred             CChH-HHHHHH-----------H--HHHHHcCCHHHHHHHHHHHHhh-------CCC----C-------HHHHHHHHHHH
Q 002729          166 PTFA-IAWSNL-----------A--GLFMESGDLNRALQYYKEAVKL-------KPT----F-------PDAYLNLGNVY  213 (887)
Q Consensus       166 p~~~-~~~~~l-----------a--~~~~~~g~~~~A~~~~~~~l~~-------~~~----~-------~~~~~~l~~~~  213 (887)
                      -.+. ..|...           |  .+-.....|..|...+++....       +|.    .       .+.|.++...-
T Consensus       168 m~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wE  247 (656)
T KOG1914|consen  168 MHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWE  247 (656)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHH
Confidence            2221 122211           1  1112233455666666555432       111    0       11333333332


Q ss_pred             HHcCCh--------HHHHHHHHHHHhhCCC-hhHHhhHHHHHHHcCC--------------hHHHHHHHHHHHhc-CCCc
Q 002729          214 KALGMP--------QEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQ--------------ADMAILYYKQAIGC-DPRF  269 (887)
Q Consensus       214 ~~~g~~--------~~A~~~~~~~~~~~p~-~~~~~~la~~~~~~g~--------------~~~A~~~~~~~l~~-~p~~  269 (887)
                      ...+--        ....-.+++++...+- ++.|+..+..+...++              -+++..+|++++.. ...+
T Consensus       248 ksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~  327 (656)
T KOG1914|consen  248 KSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKEN  327 (656)
T ss_pred             hcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence            222111        1122234444443332 4444443333333333              45666666666632 2223


Q ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCh-HHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHH
Q 002729          270 LEAYNNLGNALKDVG---RVDEAIQCYNQCLSLQPSHP-QALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLA  345 (887)
Q Consensus       270 ~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la  345 (887)
                      ...++.++..-...-   +++..-..+++++.....++ -++..+...-.+..-.+.|..+|.++-+.......++..-|
T Consensus       328 ~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A  407 (656)
T KOG1914|consen  328 KLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAA  407 (656)
T ss_pred             HHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHH
Confidence            334444444333222   25566666777666543333 35555566666666677777788777665433323333222


Q ss_pred             HH-HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC-cHHHHHHHHHHHHhCCC
Q 002729          346 VI-YKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI--RPT-MAEAHANLASAYKDSGH  421 (887)
Q Consensus       346 ~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~-~~~~~~~la~~~~~~g~  421 (887)
                      .+ |..+++.+-|...|+-.++..++.+..-......+..+++-..|...|++++..  .|+ ..++|..+...-..-|+
T Consensus       408 ~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGd  487 (656)
T KOG1914|consen  408 LMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGD  487 (656)
T ss_pred             HHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhccc
Confidence            22 345677888888888888888888777777777778888888888888888776  332 34677777777777788


Q ss_pred             HHHHHHHHHHHHHcCC
Q 002729          422 VEAAIKSYKQALLLRP  437 (887)
Q Consensus       422 ~~~A~~~~~~al~~~p  437 (887)
                      .+..+++=++.....|
T Consensus       488 L~si~~lekR~~~af~  503 (656)
T KOG1914|consen  488 LNSILKLEKRRFTAFP  503 (656)
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            8887777777766666

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=99.20  E-value=1.3e-06  Score=91.46  Aligned_cols=413  Identities=11%  Similarity=0.063  Sum_probs=279.5

Q ss_pred             HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH
Q 002729           57 EEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVD  136 (887)
Q Consensus        57 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~  136 (887)
                      ++-++.+|.+..+|+.+.+-+..+ -+++..+.|++.+...|..+.+|...+...+..++++....+|.+.+..-- +.+
T Consensus        10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL-nlD   87 (656)
T KOG1914|consen   10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL-NLD   87 (656)
T ss_pred             HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hHh
Confidence            567889999999999999988777 999999999999999999999999999999999999999999999986532 244


Q ss_pred             HHHH-HHHHHHHcCChHHHHH----HHHHHHh---hCCChHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHhhC
Q 002729          137 AHSN-LGNLMKAQGLVQEAYS----CYLEALR---IQPTFAIAWSNLAGLFM---------ESGDLNRALQYYKEAVKLK  199 (887)
Q Consensus       137 ~~~~-la~~~~~~g~~~~A~~----~~~~al~---~~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~~~l~~~  199 (887)
                      .|.. +..+-...++...+..    .|+-++.   .++.+...|...+..+.         .+.+.+...+.|++++..-
T Consensus        88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP  167 (656)
T KOG1914|consen   88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP  167 (656)
T ss_pred             HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence            4433 3333344444444333    3333333   35666677777665533         3446667788888888643


Q ss_pred             CCCHH-HHHHH-----------H--HHHHHcCChHHHHHHHHHHHhhC-------CC------------hhHHhhHHHHH
Q 002729          200 PTFPD-AYLNL-----------G--NVYKALGMPQEAIMCYQRAVQTR-------PN------------AIAFGNLASTY  246 (887)
Q Consensus       200 ~~~~~-~~~~l-----------~--~~~~~~g~~~~A~~~~~~~~~~~-------p~------------~~~~~~la~~~  246 (887)
                      -.+.+ .|...           |  .+-.+...|..|...+++.....       |.            ...|.++...-
T Consensus       168 m~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wE  247 (656)
T KOG1914|consen  168 MHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWE  247 (656)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHH
Confidence            33322 22111           1  11223345667777777665421       11            12233333322


Q ss_pred             HHcCC--------hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhcC-CCC
Q 002729          247 YERGQ--------ADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGR--------------VDEAIQCYNQCLSLQ-PSH  303 (887)
Q Consensus       247 ~~~g~--------~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~-p~~  303 (887)
                      ...+-        -....-.+++++..-+-.++.|+..+..+...++              -+++..+++++++.. ..+
T Consensus       248 ksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~  327 (656)
T KOG1914|consen  248 KSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKEN  327 (656)
T ss_pred             hcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence            22111        1123345666666666777788777666666555              677888888877643 223


Q ss_pred             hHHHHhHHHHHHHcC---ChhHHHHHHHHHHhccCC-CchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002729          304 PQALTNLGNIYMEWN---MLPAAASYYKATLAVTTG-LSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRG  379 (887)
Q Consensus       304 ~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  379 (887)
                      ...++.++..-...-   +.+.....+++++..... ..-+|..+...-.+..-.+.|..+|.++-+..-....++..-|
T Consensus       328 ~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A  407 (656)
T KOG1914|consen  328 KLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAA  407 (656)
T ss_pred             HHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHH
Confidence            444555554433333   367777888888876544 3445777777777888899999999999876544445555444


Q ss_pred             H-HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCC-ChHHHHHHHHHhhhcCC
Q 002729          380 N-TYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLL--RPD-FPEATCNLLHTLQCVCS  455 (887)
Q Consensus       380 ~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~-~~~~~~~l~~~~~~~g~  455 (887)
                      . -|...++.+-|.++|+-.++..++.+..-......+...|+-..|+.+|++++..  .|+ ...+|..++.--.+.|+
T Consensus       408 ~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGd  487 (656)
T KOG1914|consen  408 LMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGD  487 (656)
T ss_pred             HHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhccc
Confidence            3 3556799999999999999999999999999999999999999999999999987  332 34677777777778888


Q ss_pred             hhhHhHHHHHHHHHHH
Q 002729          456 WEDRDRMFSEVEGIIR  471 (887)
Q Consensus       456 ~~~a~~~~~~~~~~~~  471 (887)
                      .....++-++.-..++
T Consensus       488 L~si~~lekR~~~af~  503 (656)
T KOG1914|consen  488 LNSILKLEKRRFTAFP  503 (656)
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            7776666665555444

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.20  E-value=4.4e-09  Score=109.06  Aligned_cols=153  Identities=23%  Similarity=0.166  Sum_probs=113.4

Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002729           64 PRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGN  143 (887)
Q Consensus        64 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~  143 (887)
                      |....+++..+..++..|++++|+..++..+...|+|+..+...+.++...++.++|.+.+++++..+|+.......+|.
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~  382 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ  382 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence            56677777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHH
Q 002729          144 LMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAI  223 (887)
Q Consensus       144 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~  223 (887)
                      .+.+.|++++|+..++..+..+|+++..|..|++.|..+|+..++...                 .+..|...|++++|+
T Consensus       383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~  445 (484)
T COG4783         383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAI  445 (484)
T ss_pred             HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHH
Confidence            777777777777777777777777777777777777777766555433                 344555667777777


Q ss_pred             HHHHHHHhhC
Q 002729          224 MCYQRAVQTR  233 (887)
Q Consensus       224 ~~~~~~~~~~  233 (887)
                      ..+..+.+..
T Consensus       446 ~~l~~A~~~~  455 (484)
T COG4783         446 IFLMRASQQV  455 (484)
T ss_pred             HHHHHHHHhc
Confidence            7777666653

>PRK00654 glgA glycogen synthase; Provisional

Probab=99.20  E-value=1.7e-10  Score=129.43  Aligned_cols=162  Identities=18%  Similarity=0.090  Sum_probs=112.9

Q ss_pred             CCCCCCCCC-CcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEecCChh-hHHHHHHHHHHcCCCCCcEEE-cCC
Q 002729          703 KRSDYGLPE-DKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAA-GEMRLRAYAVAQGVQPDQIIF-TDV  777 (887)
Q Consensus       703 ~r~~~~l~~-~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~-~~~~l~~~~~~~g~~~~r~~~-~~~  777 (887)
                      .|.++|+++ +.+++++++|+  .|..+.+++++.++++.  +.+|+|+|.++. ..+.+++...+.|   +++.| .|.
T Consensus       271 l~~~~gl~~~~~~~i~~vGRl~~~KG~~~li~a~~~l~~~--~~~lvivG~g~~~~~~~l~~l~~~~~---~~v~~~~g~  345 (466)
T PRK00654        271 LQERFGLPDDDAPLFAMVSRLTEQKGLDLVLEALPELLEQ--GGQLVLLGTGDPELEEAFRALAARYP---GKVGVQIGY  345 (466)
T ss_pred             HHHHhCCCCCCCcEEEEeeccccccChHHHHHHHHHHHhc--CCEEEEEecCcHHHHHHHHHHHHHCC---CcEEEEEeC
Confidence            467789985 67888888886  59999999999998764  688999987653 3567787777776   45665 454


Q ss_pred             CCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCcccc--CCHHHHHHHHH
Q 002729          778 AMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAV  854 (887)
Q Consensus       778 ~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~--~~~~~y~~~a~  854 (887)
                       +.+.....|+.+|++|-|+.++| |++.+|||++|+|+|+.....+.+-+...--..-+-++ ++.  .|.+++.+...
T Consensus       346 -~~~~~~~~~~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~~~G-~lv~~~d~~~la~~i~  423 (466)
T PRK00654        346 -DEALAHRIYAGADMFLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGEATG-FVFDDFNAEDLLRALR  423 (466)
T ss_pred             -CHHHHHHHHhhCCEEEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCCCce-EEeCCCCHHHHHHHHH
Confidence             43444567899999999988888 99999999999998865443333322110000001334 443  57888887777


Q ss_pred             HHhc---CHHHHHHHHHHHH
Q 002729          855 SLAL---DRQKLQALTNKLK  871 (887)
Q Consensus       855 ~l~~---d~~~~~~~~~~~~  871 (887)
                      ++..   |++.+.+++.+..
T Consensus       424 ~~l~~~~~~~~~~~~~~~~~  443 (466)
T PRK00654        424 RALELYRQPPLWRALQRQAM  443 (466)
T ss_pred             HHHHHhcCHHHHHHHHHHHh
Confidence            6654   7777777765553

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=99.20  E-value=1.8e-06  Score=95.99  Aligned_cols=431  Identities=13%  Similarity=0.061  Sum_probs=276.8

Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHH
Q 002729           43 YYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQ  122 (887)
Q Consensus        43 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  122 (887)
                      ....+++.+|++...+.++..|+...+....|..+.++|+.++|..+++..-...+++...+..+-.+|..+|++++|..
T Consensus        19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~   98 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH   98 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence            35668899999999999999999999999999999999999999988888877888888899999999999999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHc-CCH---------HHHHHHH
Q 002729          123 CCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMES-GDL---------NRALQYY  192 (887)
Q Consensus       123 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~---------~~A~~~~  192 (887)
                      +|++++..+|+ .+....+=.+|.+.+.|.+-.+.--+..+..|+++..+-....++++. ...         .-|....
T Consensus        99 ~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~  177 (932)
T KOG2053|consen   99 LYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMV  177 (932)
T ss_pred             HHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHH
Confidence            99999999999 888888888999999988877777777778888776544444444432 222         2355566


Q ss_pred             HHHHhhC-CCCHH-HHHHHHHHHHHcCChHHHHHHHH-HHHhhCCC--hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCC
Q 002729          193 KEAVKLK-PTFPD-AYLNLGNVYKALGMPQEAIMCYQ-RAVQTRPN--AIAFGNLASTYYERGQADMAILYYKQAIGCDP  267 (887)
Q Consensus       193 ~~~l~~~-~~~~~-~~~~l~~~~~~~g~~~~A~~~~~-~~~~~~p~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p  267 (887)
                      ++.++.. +-... -....-.++..+|++++|.+.+. ...+..+.  ...-......+...+++.+-.++..+++...+
T Consensus       178 ~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~  257 (932)
T KOG2053|consen  178 QKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN  257 (932)
T ss_pred             HHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence            6666655 22111 12233356677899999999994 44444444  33334566778888999999999999998888


Q ss_pred             CcHHHHHH-HHHHH------------HHcCCHHHHHHHHHHHHhcCCCChH-HHHhHHHHHHHcCChhHHHHHHHHHHhc
Q 002729          268 RFLEAYNN-LGNAL------------KDVGRVDEAIQCYNQCLSLQPSHPQ-ALTNLGNIYMEWNMLPAAASYYKATLAV  333 (887)
Q Consensus       268 ~~~~~~~~-la~~~------------~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~  333 (887)
                      ++..++.. .-.++            ...+..+...+..++.+......+. ++..+-.-+..-|+.+++...|-+-+..
T Consensus       258 Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kfg~  337 (932)
T KOG2053|consen  258 DDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKKFGD  337 (932)
T ss_pred             cchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHHhCC
Confidence            87322221 11111            1112233333333333332222222 2233333334567777766555443322


Q ss_pred             cCC------------------------------Cc---hh---HhhHHHHHHHcCCH-----HHHHHHHHHHHh------
Q 002729          334 TTG------------------------------LS---AP---FNNLAVIYKQQGNY-----ADAISCYNEVLR------  366 (887)
Q Consensus       334 ~~~------------------------------~~---~~---~~~la~~~~~~g~~-----~~A~~~~~~al~------  366 (887)
                      .|-                              ..   ..   +.....+....|.+     +.-..++++...      
T Consensus       338 kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gl  417 (932)
T KOG2053|consen  338 KPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGL  417 (932)
T ss_pred             CcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccc
Confidence            111                              00   00   11111111122311     122222222211      


Q ss_pred             -c----CCC---CHHHHHHH-----HHHHHHcCC---HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHH
Q 002729          367 -I----DPL---AADGLVNR-----GNTYKEIGR---VTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYK  430 (887)
Q Consensus       367 -~----~p~---~~~~~~~l-----~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  430 (887)
                       .    .|.   ..+.+..+     -..+.+.++   +-+|+-.++..+..+|.+......+..+|.-.|-+..|.+.|+
T Consensus       418 s~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~  497 (932)
T KOG2053|consen  418 SLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYK  497 (932)
T ss_pred             cccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHH
Confidence             1    111   12222222     234444444   5578888888888889888888888899988899888888888


Q ss_pred             HHHHcCCCChHHHHHHHHHhhhcCChhhHhHHHHHHHHHHHHHh
Q 002729          431 QALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQV  474 (887)
Q Consensus       431 ~al~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  474 (887)
                      .+--.+-.....-+.+..-+...|+|..+...+.....++....
T Consensus       498 tLdIK~IQ~DTlgh~~~~~~~t~g~~~~~s~~~~~~lkfy~~~~  541 (932)
T KOG2053|consen  498 TLDIKNIQTDTLGHLIFRRAETSGRSSFASNTFNEHLKFYDSSL  541 (932)
T ss_pred             hcchHHhhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhhhh
Confidence            66544444444555556666667888888888777777665544

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.20  E-value=5.9e-09  Score=108.16  Aligned_cols=125  Identities=26%  Similarity=0.254  Sum_probs=65.3

Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHH
Q 002729          267 PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAV  346 (887)
Q Consensus       267 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~  346 (887)
                      |....+++..+..+...|++++|+..+...+...|+|+..+...+.++.+.++..+|.+.+++++...|+....+.++|.
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~  382 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ  382 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence            34444455555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 002729          347 IYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDA  391 (887)
Q Consensus       347 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  391 (887)
                      .|.+.|++.+|+..++..+..+|+++..|..++..|..+|+..+|
T Consensus       383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a  427 (484)
T COG4783         383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEA  427 (484)
T ss_pred             HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHH
Confidence            555555555555555555555555555555555555555544333

>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase

Probab=99.19  E-value=6.3e-10  Score=121.23  Aligned_cols=301  Identities=12%  Similarity=0.155  Sum_probs=180.1

Q ss_pred             eeeeecCCCCCChhHHhhhHHhhcCCCC-CcEEEEEecCCCCChHHHHHHHhhcC----ceEECCC--CC--------HH
Q 002729          538 RVGYVSSDFGNHPLSHLMGSVFGMHNKE-NVEVFCYALSPNDGTEWRQRTQSEAE----HFVDVSA--MS--------SD  602 (887)
Q Consensus       538 riGyvs~d~~~h~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~--~~--------~~  602 (887)
                      ||.++.+   ..|-...+.++++.+.+. .|++.+..+|... .. ...+.....    ....+..  -+        ..
T Consensus         2 ~i~~~~g---tr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~-~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~   76 (365)
T TIGR00236         2 KVSIVLG---TRPEAIKMAPLIRALKKYPEIDSYVIVTAQHR-EM-LDQVLDLFHLPPDYDLNIMSPGQTLGEITSNMLE   76 (365)
T ss_pred             eEEEEEe---cCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCH-HH-HHHHHHhcCCCCCeeeecCCCCCCHHHHHHHHHH
Confidence            5666554   566666888998888764 6888888888764 22 233333332    2222322  11        15


Q ss_pred             HHHHHHHhCCCeEEEecCCcCCCCchhhh------hcCCCceEEeccccCCCCCC----Cc-c-c---EEEecCccCCCC
Q 002729          603 MIAKLINEDKIQILINLNGYTKGARNEIF------AMQPAPIQVSYMGFPGTTGA----SY-I-D---YLVTDEFVSPLR  667 (887)
Q Consensus       603 ~~~~~i~~~~~dil~~~~~~~~~~~~~~~------~~r~apvq~~~~g~~~t~g~----~~-~-d---~~~~d~~~~p~~  667 (887)
                      ++++.+++.++||+     |++|.+...+      .....|+-.+.-|- .|.+.    +. + .   ..++|.++.|.+
T Consensus        77 ~l~~~l~~~~pDiv-----~~~gd~~~~la~a~aa~~~~ipv~h~~~g~-~s~~~~~~~~~~~~r~~~~~~ad~~~~~s~  150 (365)
T TIGR00236        77 GLEELLLEEKPDIV-----LVQGDTTTTLAGALAAFYLQIPVGHVEAGL-RTGDRYSPMPEEINRQLTGHIADLHFAPTE  150 (365)
T ss_pred             HHHHHHHHcCCCEE-----EEeCCchHHHHHHHHHHHhCCCEEEEeCCC-CcCCCCCCCccHHHHHHHHHHHHhccCCCH
Confidence            67888999999999     5555443222      22446774332222 22221    10 0 0   013465666655


Q ss_pred             c-------CCCCccceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCC---CCCCHHHHHHHHHHH
Q 002729          668 Y-------AHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL---YKMDPEIFNTWCNIL  737 (887)
Q Consensus       668 ~-------~~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~---~k~~~~~~~~~~~il  737 (887)
                      .       .+...+++..+++.........   . ........+..+|. ++.+++++.++.   .|..+.+++++.++.
T Consensus       151 ~~~~~l~~~G~~~~~I~vign~~~d~~~~~---~-~~~~~~~~~~~~~~-~~~~vl~~~hr~~~~~k~~~~ll~a~~~l~  225 (365)
T TIGR00236       151 QAKDNLLRENVKADSIFVTGNTVIDALLTN---V-EIAYSSPVLSEFGE-DKRYILLTLHRRENVGEPLENIFKAIREIV  225 (365)
T ss_pred             HHHHHHHHcCCCcccEEEeCChHHHHHHHH---H-hhccchhHHHhcCC-CCCEEEEecCchhhhhhHHHHHHHHHHHHH
Confidence            3       1223346666666532110000   0 00011223455663 345666676653   377899999999998


Q ss_pred             hhcCCceEEEecCC-hhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCCchhHHHHHHhCCcee
Q 002729          738 RRVPNSALWLLRFP-AAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMI  816 (887)
Q Consensus       738 ~~~p~~~l~~~~~~-~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvv  816 (887)
                      ++.|+.++++.+.+ +.....+   ....+. .++|.|.+.+++.+++.++..+|+++-++    |..++|||++|+|||
T Consensus       226 ~~~~~~~~vi~~~~~~~~~~~~---~~~~~~-~~~v~~~~~~~~~~~~~~l~~ad~vv~~S----g~~~~EA~a~g~PvI  297 (365)
T TIGR00236       226 EEFEDVQIVYPVHLNPVVREPL---HKHLGD-SKRVHLIEPLEYLDFLNLAANSHLILTDS----GGVQEEAPSLGKPVL  297 (365)
T ss_pred             HHCCCCEEEEECCCChHHHHHH---HHHhCC-CCCEEEECCCChHHHHHHHHhCCEEEECC----hhHHHHHHHcCCCEE
Confidence            88899888876543 3322223   233455 57899999999999999999999998543    344799999999999


Q ss_pred             eec--ccchhhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002729          817 TLP--LEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKL  870 (887)
Q Consensus       817 t~~--g~~~~~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l~~d~~~~~~~~~~~  870 (887)
                      +..  |+. ..     +. ..|..- ++..|+++..+...++..|++.+++++...
T Consensus       298 ~~~~~~~~-~e-----~~-~~g~~~-lv~~d~~~i~~ai~~ll~~~~~~~~~~~~~  345 (365)
T TIGR00236       298 VLRDTTER-PE-----TV-EAGTNK-LVGTDKENITKAAKRLLTDPDEYKKMSNAS  345 (365)
T ss_pred             ECCCCCCC-hH-----HH-hcCceE-EeCCCHHHHHHHHHHHHhChHHHHHhhhcC
Confidence            964  322 11     11 135443 556799999998889999998887776543

Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.

>PLN00142 sucrose synthase

Probab=99.18  E-value=3.3e-10  Score=128.90  Aligned_cols=162  Identities=13%  Similarity=0.067  Sum_probs=120.8

Q ss_pred             CCCCC--CCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEecCChh-----h------HHHHHHHHHHcCCCC
Q 002729          705 SDYGL--PEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAA-----G------EMRLRAYAVAQGVQP  769 (887)
Q Consensus       705 ~~~~l--~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~-----~------~~~l~~~~~~~g~~~  769 (887)
                      ..+|+  +.+..++++.+|+  .|..+.++++++++.+..|+.+|+|+|++..     .      ..++.+.+.+.|+ .
T Consensus       563 e~lg~l~~~~kpvIl~VGRL~~~KGid~LIeA~a~l~~l~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL-~  641 (815)
T PLN00142        563 EHIGYLKDRKKPIIFSMARLDRVKNLTGLVEWYGKNKRLRELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNL-K  641 (815)
T ss_pred             HHhCCccCCCCcEEEEEecCcccCCHHHHHHHHHHHHHhCCCcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCC-C
Confidence            34565  3445677788887  5999999999999877778899999986521     0      1357778889999 6


Q ss_pred             CcEEEcCCC----CcHHHHHhcc-CCcEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCcccc
Q 002729          770 DQIIFTDVA----MKQEHIRRSS-LADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV  843 (887)
Q Consensus       770 ~r~~~~~~~----~~~~~~~~~~-~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~  843 (887)
                      ++|.|.|..    +..+...++. .+|||+-|+.++| |+|++|||+||+|||+-......+-+..      |.++ +++
T Consensus       642 ~~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPVVATdvGG~~EIV~d------G~tG-~LV  714 (815)
T PLN00142        642 GQFRWIAAQTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCQGGPAEIIVD------GVSG-FHI  714 (815)
T ss_pred             CcEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCEEEcCCCCHHHHhcC------CCcE-EEe
Confidence            999999853    3356666555 4799999988888 9999999999999997554444442221      6777 655


Q ss_pred             --CCHHHHHHHHHH----HhcCHHHHHHHHHHHHhhc
Q 002729          844 --NSMKEYEERAVS----LALDRQKLQALTNKLKSVR  874 (887)
Q Consensus       844 --~~~~~y~~~a~~----l~~d~~~~~~~~~~~~~~~  874 (887)
                        .|.+++.+....    +..|++.+.++++..+++.
T Consensus       715 ~P~D~eaLA~aI~~lLekLl~Dp~lr~~mg~~Ar~rv  751 (815)
T PLN00142        715 DPYHGDEAANKIADFFEKCKEDPSYWNKISDAGLQRI  751 (815)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence              578888777654    4579999999998877664

>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis

Probab=99.17  E-value=4.9e-10  Score=121.75  Aligned_cols=245  Identities=15%  Similarity=0.168  Sum_probs=143.6

Q ss_pred             HHHHHHHhCCCeEEEecCCcCCCCchhhhh-cCCCceEEecc-ccCCCCCC-CcccEEEecCccCCCCcCC--CCcccee
Q 002729          603 MIAKLINEDKIQILINLNGYTKGARNEIFA-MQPAPIQVSYM-GFPGTTGA-SYIDYLVTDEFVSPLRYAH--IYSEKLV  677 (887)
Q Consensus       603 ~~~~~i~~~~~dil~~~~~~~~~~~~~~~~-~r~apvq~~~~-g~~~t~g~-~~~d~~~~d~~~~p~~~~~--~~~e~~~  677 (887)
                      .+.+.|++.++||++..++... --..+.+ ....|+.+.-. .+|   +. ..+-+..+|.++.+.....  ...+++.
T Consensus        80 ~~~~~i~~~~pDvI~~~~~~~~-~~~~~~a~~~~~p~v~~~~~~~~---~~~~~~~~~~~~~vi~~s~~~~~~~~~~~~~  155 (350)
T cd03785          80 QARKILKKFKPDVVVGFGGYVS-GPVGLAAKLLGIPLVIHEQNAVP---GLANRLLARFADRVALSFPETAKYFPKDKAV  155 (350)
T ss_pred             HHHHHHHhcCCCEEEECCCCcc-hHHHHHHHHhCCCEEEEcCCCCc---cHHHHHHHHhhCEEEEcchhhhhcCCCCcEE
Confidence            4678889999999975433221 0011112 23457654211 111   11 0111223455544443322  2246676


Q ss_pred             ecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCCC--CCCHHHH-HHHHHHHhhcCCce-EEEecCChh
Q 002729          678 HVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQLY--KMDPEIF-NTWCNILRRVPNSA-LWLLRFPAA  753 (887)
Q Consensus       678 ~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~--k~~~~~~-~~~~~il~~~p~~~-l~~~~~~~~  753 (887)
                      .+|+......        ..+  .+.|..++++++.++++.+.+..  |...+++ ++...+. + ++.. ++++|.+  
T Consensus       156 ~i~n~v~~~~--------~~~--~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~-~-~~~~~~~i~G~g--  221 (350)
T cd03785         156 VTGNPVREEI--------LAL--DRERARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELL-R-KRLQVIHQTGKG--  221 (350)
T ss_pred             EECCCCchHH--------hhh--hhhHHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhh-c-cCeEEEEEcCCc--
Confidence            6665432111        111  11267788888777666655432  4333333 5554443 2 4454 4455655  


Q ss_pred             hHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCCchhHHHHHHhCCceeeecccch---hhhhHHH
Q 002729          754 GEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKM---ATRVAGS  830 (887)
Q Consensus       754 ~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~---~~r~~~~  830 (887)
                      ..+.+++..++.   .++|+|.|..  .+...+|..+|+++-+   +|++|++|||++|+|||+.+-...   .....+.
T Consensus       222 ~~~~l~~~~~~~---~~~v~~~g~~--~~~~~~l~~ad~~v~~---sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~  293 (350)
T cd03785         222 DLEEVKKAYEEL---GVNYEVFPFI--DDMAAAYAAADLVISR---AGASTVAELAALGLPAILIPLPYAADDHQTANAR  293 (350)
T ss_pred             cHHHHHHHHhcc---CCCeEEeehh--hhHHHHHHhcCEEEEC---CCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHH
Confidence            356777777665   3789999987  6778889999999953   367899999999999998653221   1111233


Q ss_pred             HHHhcCCCCccccC---CHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 002729          831 LCLATGLGEEMIVN---SMKEYEERAVSLALDRQKLQALTNKLKSVR  874 (887)
Q Consensus       831 ~l~~~g~~~~~~~~---~~~~y~~~a~~l~~d~~~~~~~~~~~~~~~  874 (887)
                      .+...|..- ++-.   |.+++.+....+..|++.++.++.+.++..
T Consensus       294 ~l~~~g~g~-~v~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~  339 (350)
T cd03785         294 ALVKAGAAV-LIPQEELTPERLAAALLELLSDPERLKAMAEAARSLA  339 (350)
T ss_pred             HHHhCCCEE-EEecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            455556543 4432   799999999999999999999999887653

It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.

>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc)

Probab=99.17  E-value=7.3e-10  Score=121.05  Aligned_cols=303  Identities=13%  Similarity=0.122  Sum_probs=177.4

Q ss_pred             eeeeecCCCCCChhHHhhhHHhhcCCCC-CcEEEEEecCCCCChHHHHHHHh-----hcCceEECCCCC----------H
Q 002729          538 RVGYVSSDFGNHPLSHLMGSVFGMHNKE-NVEVFCYALSPNDGTEWRQRTQS-----EAEHFVDVSAMS----------S  601 (887)
Q Consensus       538 riGyvs~d~~~h~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~----------~  601 (887)
                      ||.+|.+   .-|---.+.|+++.+... ++++.++.++...+..+..-+..     ..+....+.+-+          .
T Consensus         1 ~i~~~~g---tr~~~~~~~pl~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   77 (363)
T cd03786           1 KILVVTG---TRPEYIKLAPLIRALKKDPGFELVLVVTGQHYDMEMGVTFFEILFIIKPDYDLLLGSDSQSLGAQTAGLL   77 (363)
T ss_pred             CEEEEEe---cCHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCChhhhHHHHHhhCCCCCCEEEecCCCCCCHHHHHHHHH
Confidence            3555553   234334667777777665 79999888887665443322222     223333333321          2


Q ss_pred             HHHHHHHHhCCCeEEEecCCcCCCCchh----hhh--cCCCceEEeccccCC-CCCCCc--cc---EEEecCccCCCCcC
Q 002729          602 DMIAKLINEDKIQILINLNGYTKGARNE----IFA--MQPAPIQVSYMGFPG-TTGASY--ID---YLVTDEFVSPLRYA  669 (887)
Q Consensus       602 ~~~~~~i~~~~~dil~~~~~~~~~~~~~----~~~--~r~apvq~~~~g~~~-t~g~~~--~d---~~~~d~~~~p~~~~  669 (887)
                      ..+.+.+++.++||++     ++|.+..    ..+  ..--|+-.+.-|... ..+.+.  .-   ..++|.++.|.+..
T Consensus        78 ~~l~~~l~~~~pDvV~-----~~g~~~~~~~~~~aa~~~~iPvv~~~~g~~s~~~~~~~~~~r~~~~~~ad~~~~~s~~~  152 (363)
T cd03786          78 IGLEAVLLEEKPDLVL-----VLGDTNETLAAALAAFKLGIPVAHVEAGLRSFDRGMPDEENRHAIDKLSDLHFAPTEEA  152 (363)
T ss_pred             HHHHHHHHHhCCCEEE-----EeCCchHHHHHHHHHHHcCCCEEEEecccccCCCCCCchHHHHHHHHHhhhccCCCHHH
Confidence            5567788889999995     4443322    112  123466543323110 001110  00   11346666665532


Q ss_pred             CC-------CccceeecCCccccCCCccccccCCCCCC-CCCCCCCCCCCCcEEEEecCCC-----CCCCHHHHHHHHHH
Q 002729          670 HI-------YSEKLVHVPHCYFVNDYKQKNMDVLDPNC-QPKRSDYGLPEDKFIFACFNQL-----YKMDPEIFNTWCNI  736 (887)
Q Consensus       670 ~~-------~~e~~~~lp~~~~~~~~~~~~~~~~~~~~-~~~r~~~~l~~~~~~~~~~~~~-----~k~~~~~~~~~~~i  736 (887)
                      ..       -.+++..+|+.........     .+... ...|..+|++++.++++++++.     .|..+.+++++.++
T Consensus       153 ~~~l~~~G~~~~kI~vign~v~d~~~~~-----~~~~~~~~~~~~~~~~~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l  227 (363)
T cd03786         153 RRNLLQEGEPPERIFVVGNTMIDALLRL-----LELAKKELILELLGLLPKKYILVTLHRVENVDDGEQLEEILEALAEL  227 (363)
T ss_pred             HHHHHHcCCCcccEEEECchHHHHHHHH-----HHhhccchhhhhcccCCCCEEEEEeCCccccCChHHHHHHHHHHHHH
Confidence            21       2345655655421110000     00011 1134567888777777777765     46778888888877


Q ss_pred             HhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCCchhHHHHHHhCCcee
Q 002729          737 LRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMI  816 (887)
Q Consensus       737 l~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvv  816 (887)
                      ...  +..+++.+.++. +..+++.+.+.+...++|.|.|.....+...+|..+|+++-++.   | .+.||+++|+|||
T Consensus       228 ~~~--~~~vi~~~~~~~-~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ad~~v~~Sg---g-i~~Ea~~~g~PvI  300 (363)
T cd03786         228 AEE--DVPVVFPNHPRT-RPRIREAGLEFLGHHPNVLLISPLGYLYFLLLLKNADLVLTDSG---G-IQEEASFLGVPVL  300 (363)
T ss_pred             Hhc--CCEEEEECCCCh-HHHHHHHHHhhccCCCCEEEECCcCHHHHHHHHHcCcEEEEcCc---c-HHhhhhhcCCCEE
Confidence            543  455555554443 67888888888874578999998888888888999999996642   3 5799999999999


Q ss_pred             eecccc-hhhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHH
Q 002729          817 TLPLEK-MATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALT  867 (887)
Q Consensus       817 t~~g~~-~~~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l~~d~~~~~~~~  867 (887)
                      +..... .+.      +..-|..- ++.++.++.++...++..|++.+..++
T Consensus       301 ~~~~~~~~~~------~~~~g~~~-~~~~~~~~i~~~i~~ll~~~~~~~~~~  345 (363)
T cd03786         301 NLRDRTERPE------TVESGTNV-LVGTDPEAILAAIEKLLSDEFAYSLMS  345 (363)
T ss_pred             eeCCCCccch------hhheeeEE-ecCCCHHHHHHHHHHHhcCchhhhcCC
Confidence            986432 222      22235544 455578999999999999988776664

The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st

>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type

Probab=99.16  E-value=8.4e-10  Score=124.52  Aligned_cols=163  Identities=16%  Similarity=0.019  Sum_probs=119.2

Q ss_pred             CCCCCCCCC--CcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEecCCh-hhHHHHHHHHHHcCCCCCcEEEcCC
Q 002729          703 KRSDYGLPE--DKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPA-AGEMRLRAYAVAQGVQPDQIIFTDV  777 (887)
Q Consensus       703 ~r~~~~l~~--~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~~~-~~~~~l~~~~~~~g~~~~r~~~~~~  777 (887)
                      .|.++|++.  +.+++++++|+  .|..+.+++++.++.+.  +.+|+|+|.++ ...+.+++...+.+   +++.|.+.
T Consensus       279 l~~~~gl~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~--~~~lvi~G~g~~~~~~~l~~~~~~~~---~~v~~~~~  353 (473)
T TIGR02095       279 LQEELGLPVDDDVPLFGVISRLTQQKGVDLLLAALPELLEL--GGQLVVLGTGDPELEEALRELAERYP---GNVRVIIG  353 (473)
T ss_pred             HHHHcCCCccCCCCEEEEEecCccccChHHHHHHHHHHHHc--CcEEEEECCCCHHHHHHHHHHHHHCC---CcEEEEEc
Confidence            567789986  77888888887  59999999999988764  48999999774 33556666666543   67888887


Q ss_pred             CCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCcccc--CCHHHHHHHHH
Q 002729          778 AMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAV  854 (887)
Q Consensus       778 ~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~--~~~~~y~~~a~  854 (887)
                      .+.++....|+.+|++|-|+-++| |++.+|||++|+|||+.....+.+-+...--...+-++ ++.  .|++++.+...
T Consensus       354 ~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~~~G-~l~~~~d~~~la~~i~  432 (473)
T TIGR02095       354 YDEALAHLIYAGADFILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAESGTG-FLFEEYDPGALLAALS  432 (473)
T ss_pred             CCHHHHHHHHHhCCEEEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCCCce-EEeCCCCHHHHHHHHH
Confidence            777777788999999999988888 99999999999999976554444433210000001334 443  57888888877


Q ss_pred             HHhc----CHHHHHHHHHHHH
Q 002729          855 SLAL----DRQKLQALTNKLK  871 (887)
Q Consensus       855 ~l~~----d~~~~~~~~~~~~  871 (887)
                      ++..    |++.+++++.+..
T Consensus       433 ~~l~~~~~~~~~~~~~~~~~~  453 (473)
T TIGR02095       433 RALRLYRQDPSLWEALQKNAM  453 (473)
T ss_pred             HHHHHHhcCHHHHHHHHHHHh
Confidence            6665    8888888877654

This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.15  E-value=1e-09  Score=98.14  Aligned_cols=102  Identities=17%  Similarity=0.122  Sum_probs=72.5

Q ss_pred             CCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 002729          301 PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGN  380 (887)
Q Consensus       301 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  380 (887)
                      ++.-+..+.+|..+...|++++|.+.|+.+...+|.+...|++||.++..+|++++|+..|.+++.++|+++..+.+.|.
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~  111 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE  111 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence            44555666666666666777777777776666777777777777777777777777777777777777777777777777


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcC
Q 002729          381 TYKEIGRVTDAIQDYIRAITIR  402 (887)
Q Consensus       381 ~~~~~g~~~~A~~~~~~al~~~  402 (887)
                      |+...|+.+.|++.|+.++...
T Consensus       112 c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        112 CYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHh
Confidence            7777777777777777777654

>PRK14099 glycogen synthase; Provisional

Probab=99.14  E-value=5.7e-10  Score=124.55  Aligned_cols=160  Identities=21%  Similarity=0.175  Sum_probs=110.6

Q ss_pred             CCCCCCCCC--CcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEecCChh-hHHHHHHHHHHcCCCCCcE-EEcC
Q 002729          703 KRSDYGLPE--DKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAA-GEMRLRAYAVAQGVQPDQI-IFTD  776 (887)
Q Consensus       703 ~r~~~~l~~--~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~-~~~~l~~~~~~~g~~~~r~-~~~~  776 (887)
                      .|.++|++.  +.++|++++|+  .|..+.++++..++++.  +.+|+|+|.++. .++.+++...+.+   +++ .|+|
T Consensus       283 l~~~~gl~~~~~~~li~~VgRL~~~KG~d~Li~A~~~l~~~--~~~lvivG~G~~~~~~~l~~l~~~~~---~~v~~~~G  357 (485)
T PRK14099        283 LQARFGLDPDPDALLLGVISRLSWQKGLDLLLEALPTLLGE--GAQLALLGSGDAELEARFRAAAQAYP---GQIGVVIG  357 (485)
T ss_pred             HHHHcCCCcccCCcEEEEEecCCccccHHHHHHHHHHHHhc--CcEEEEEecCCHHHHHHHHHHHHHCC---CCEEEEeC
Confidence            466789974  56788888886  59999999999988753  688999997653 3556777666654   555 6888


Q ss_pred             CCCcHHHHHhc-cCCcEEecCCCCCC-chhHHHHHHhCC-ceeeecccchhhhhHHH--HHHhcC-CCCcccc--CCHHH
Q 002729          777 VAMKQEHIRRS-SLADLFLDTPLCNA-HTTGTDILWAGL-PMITLPLEKMATRVAGS--LCLATG-LGEEMIV--NSMKE  848 (887)
Q Consensus       777 ~~~~~~~~~~~-~~~d~~ld~~~~~g-~~t~~eal~~gv-Pvvt~~g~~~~~r~~~~--~l~~~g-~~~~~~~--~~~~~  848 (887)
                      .  .++...+| ..+|++|-|+-++| |++.+|||++|+ ||||-.|. ..+-+...  .....| -++ +++  .|.++
T Consensus       358 ~--~~~l~~~~~a~aDifv~PS~~E~fGl~~lEAma~G~ppVvs~~GG-l~d~V~~~~~~~~~~~~~~G-~l~~~~d~~~  433 (485)
T PRK14099        358 Y--DEALAHLIQAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGG-LADTVVDANEMAIATGVATG-VQFSPVTADA  433 (485)
T ss_pred             C--CHHHHHHHHhcCCEEEECCccCCCcHHHHHHHHCCCCcEEeCCCC-ccceeecccccccccCCCce-EEeCCCCHHH
Confidence            6  45556655 57999999988888 999999999995 55553332 22211100  000001 234 443  57888


Q ss_pred             HHHHHHH---HhcCHHHHHHHHHHHH
Q 002729          849 YEERAVS---LALDRQKLQALTNKLK  871 (887)
Q Consensus       849 y~~~a~~---l~~d~~~~~~~~~~~~  871 (887)
                      +.+...+   +.+|++.+++++++.+
T Consensus       434 La~ai~~a~~l~~d~~~~~~l~~~~~  459 (485)
T PRK14099        434 LAAALRKTAALFADPVAWRRLQRNGM  459 (485)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHhh
Confidence            8777664   7789998888887664

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.14  E-value=5.1e-07  Score=98.34  Aligned_cols=270  Identities=17%  Similarity=0.213  Sum_probs=155.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCh
Q 002729           38 LLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRL  117 (887)
Q Consensus        38 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  117 (887)
                      ..+....++|-.++|+.+|.+.-+        +-.+-..|...|.+++|.++-+.--.+.  -...|+..+..+...++.
T Consensus       805 kvAvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di  874 (1416)
T KOG3617|consen  805 KVAVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDI  874 (1416)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhccH
Confidence            344555667777777777776543        2344556667777777766654321111  133567777777777777


Q ss_pred             HHHHHHHHHH----------HHhCC----------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHH
Q 002729          118 NEAAQCCRQA----------LALNP----------LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAG  177 (887)
Q Consensus       118 ~~A~~~~~~~----------l~~~p----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  177 (887)
                      +.|+++|+++          +..+|          .+...|...|..+...|+.+.|+..|..+..        |+.+.+
T Consensus       875 ~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------~fs~Vr  946 (1416)
T KOG3617|consen  875 EAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--------YFSMVR  946 (1416)
T ss_pred             HHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--------hhhhee
Confidence            7777777764          22233          2445666777777888888888888877543        455556


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC------C--C--h-----------
Q 002729          178 LFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR------P--N--A-----------  236 (887)
Q Consensus       178 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p--~--~-----------  236 (887)
                      +.+-+|+.++|-.+.++.     .+..+.+.+++.|...|+..+|+..|.++-...      .  +  .           
T Consensus       947 I~C~qGk~~kAa~iA~es-----gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~ 1021 (1416)
T KOG3617|consen  947 IKCIQGKTDKAARIAEES-----GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGG 1021 (1416)
T ss_pred             eEeeccCchHHHHHHHhc-----ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCc
Confidence            666666666665555432     445566667777777777777777666553311      0  0  0           


Q ss_pred             hHHhhHHHHHHHcC-ChHHHHHHHHHH------H-----------------hcCC-CcHHHHHHHHHHHHHcCCHHHHHH
Q 002729          237 IAFGNLASTYYERG-QADMAILYYKQA------I-----------------GCDP-RFLEAYNNLGNALKDVGRVDEAIQ  291 (887)
Q Consensus       237 ~~~~~la~~~~~~g-~~~~A~~~~~~~------l-----------------~~~p-~~~~~~~~la~~~~~~g~~~~A~~  291 (887)
                      .-....+..|...| ..+.|..+|.++      +                 .++| .++.....-+..+....+|++|..
T Consensus      1022 ~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~ 1101 (1416)
T KOG3617|consen 1022 SDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVN 1101 (1416)
T ss_pred             hhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHH
Confidence            11112233333333 444444444332      0                 1233 245566666777777777777766


Q ss_pred             HHHHH------HhcC----------------CCC---------hHHHHhHHHHHHHcCChhHHHHHHHHH
Q 002729          292 CYNQC------LSLQ----------------PSH---------PQALTNLGNIYMEWNMLPAAASYYKAT  330 (887)
Q Consensus       292 ~~~~a------l~~~----------------p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~  330 (887)
                      ++-.+      +.+.                |..         ..++..++.++.++|.|..|-+-|.++
T Consensus      1102 lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1102 LLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred             HHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence            55433      2221                110         235667788888888887777766554

>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]

Probab=99.13  E-value=3e-10  Score=112.34  Aligned_cols=160  Identities=16%  Similarity=0.224  Sum_probs=121.2

Q ss_pred             CCcccEEEecCccCCCCc---CCCCccceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCC--CCC
Q 002729          651 ASYIDYLVTDEFVSPLRY---AHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKM  725 (887)
Q Consensus       651 ~~~~d~~~~d~~~~p~~~---~~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~k~  725 (887)
                      +..+|-.|.=....-++.   ...-.+++.-+|+....-.+.+.      +...++       .+..+....+|+  .|-
T Consensus       143 L~~id~~IcVshtskentvlr~~L~p~kvsvIPnAv~~~~f~P~------~~~~~S-------~~i~~ivv~sRLvyrKG  209 (426)
T KOG1111|consen  143 LANIDRIICVSHTSKENTVLRGALAPAKVSVIPNAVVTHTFTPD------AADKPS-------ADIITIVVASRLVYRKG  209 (426)
T ss_pred             ecCCCcEEEEeecCCCceEEEeccCHhHeeeccceeeccccccC------ccccCC-------CCeeEEEEEeeeeeccc
Confidence            344555554333332221   33456888889987655444321      111111       233566666666  599


Q ss_pred             CHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCC-chh
Q 002729          726 DPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTT  804 (887)
Q Consensus       726 ~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t  804 (887)
                      .|-++++-.+|.+..|+.++++.|+||. +..+++..++.-+ .+||.|+|.++.++.-+.|...||||.|+--+. |++
T Consensus       210 iDll~~iIp~vc~~~p~vrfii~GDGPk-~i~lee~lEk~~l-~~rV~~lG~v~h~~Vr~vl~~G~IFlntSlTEafc~~  287 (426)
T KOG1111|consen  210 IDLLLEIIPSVCDKHPEVRFIIIGDGPK-RIDLEEMLEKLFL-QDRVVMLGTVPHDRVRDVLVRGDIFLNTSLTEAFCMV  287 (426)
T ss_pred             hHHHHHHHHHHHhcCCCeeEEEecCCcc-cchHHHHHHHhhc-cCceEEecccchHHHHHHHhcCcEEeccHHHHHHHHH
Confidence            9999999999999999999999999997 7778888888888 799999999999999999999999999966666 999


Q ss_pred             HHHHHHhCCceeeecccchhhhhHHHHHHhcCCCC
Q 002729          805 GTDILWAGLPMITLPLEKMATRVAGSLCLATGLGE  839 (887)
Q Consensus       805 ~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~  839 (887)
                      .+||+.||+|||       +.|+|       |+||
T Consensus       288 ivEAaScGL~VV-------sTrVG-------GIpe  308 (426)
T KOG1111|consen  288 IVEAASCGLPVV-------STRVG-------GIPE  308 (426)
T ss_pred             HHHHHhCCCEEE-------EeecC-------Cccc
Confidence            999999999999       67888       7777

>PHA01633 putative glycosyl transferase group 1

Probab=99.12  E-value=7.5e-10  Score=115.19  Aligned_cols=107  Identities=11%  Similarity=0.144  Sum_probs=86.7

Q ss_pred             CcEEEEecCCC--CCCCHHHHHHHHHHHhhcCC----ceEEEecCChhhHHHHHHHHHHcCCCCCcEEEc---CCCCcHH
Q 002729          712 DKFIFACFNQL--YKMDPEIFNTWCNILRRVPN----SALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFT---DVAMKQE  782 (887)
Q Consensus       712 ~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~----~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~---~~~~~~~  782 (887)
                      +.++|++++|+  .|..+.++++|.++.++.|+    .+|+++|.         ..+.+.++ +++|.|.   |..+.++
T Consensus       147 ~~~~i~~vGRl~~~KG~~~LI~A~~~L~~~~p~~~~~i~l~ivG~---------~~~~~l~l-~~~V~f~g~~G~~~~~d  216 (335)
T PHA01633        147 DTIKFGIVSGLTKRKNMDLMLQVFNELNTKYPDIAKKIHFFVISH---------KQFTQLEV-PANVHFVAEFGHNSREY  216 (335)
T ss_pred             CCeEEEEEeCCccccCHHHHHHHHHHHHHhCCCccccEEEEEEcH---------HHHHHcCC-CCcEEEEecCCCCCHHH
Confidence            45677777775  69999999999999888875    46776652         12356777 6899998   4556788


Q ss_pred             HHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhH
Q 002729          783 HIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVA  828 (887)
Q Consensus       783 ~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~  828 (887)
                      ....|+.+|++|-|+-++| |++.+|||+||+|||+-..+.+.+-+|
T Consensus       217 l~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g  263 (335)
T PHA01633        217 IFAFYGAMDFTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTS  263 (335)
T ss_pred             HHHHHHhCCEEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecC
Confidence            8999999999999987888 999999999999999987777666555

>PLN02275 transferase, transferring glycosyl groups

Probab=99.12  E-value=7.3e-10  Score=120.58  Aligned_cols=133  Identities=11%  Similarity=0.047  Sum_probs=101.0

Q ss_pred             EEEEecCCC--CCCCHHHHHHHHHHH-----------------hhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEE
Q 002729          714 FIFACFNQL--YKMDPEIFNTWCNIL-----------------RRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIF  774 (887)
Q Consensus       714 ~~~~~~~~~--~k~~~~~~~~~~~il-----------------~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~  774 (887)
                      +++++.+++  .|..+.+++++..+.                 +..|+.+|+|+|+|+. ++.+++.+++.|++ + ++|
T Consensus       214 ~~i~~~grl~~~k~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~i~l~ivG~G~~-~~~l~~~~~~~~l~-~-v~~  290 (371)
T PLN02275        214 ALVVSSTSWTPDEDFGILLEAAVMYDRRVAARLNESDSASGKQSLYPRLLFIITGKGPQ-KAMYEEKISRLNLR-H-VAF  290 (371)
T ss_pred             EEEEEeCceeccCCHHHHHHHHHHHHhhhhhccccccccccccccCCCeEEEEEeCCCC-HHHHHHHHHHcCCC-c-eEE
Confidence            455565664  589999999987664                 2358999999999987 78999999999994 4 777


Q ss_pred             cC-CCCcHHHHHhccCCcEEecCCC--C-CC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCccccCCHHHH
Q 002729          775 TD-VAMKQEHIRRSSLADLFLDTPL--C-NA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEY  849 (887)
Q Consensus       775 ~~-~~~~~~~~~~~~~~d~~ld~~~--~-~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~~~~~~y  849 (887)
                      .+ .++.++...+|+.+|+++-+.+  . .| +++++|||+||+|||+......++-+..      |.++ ++..+.+++
T Consensus       291 ~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~gg~~eiv~~------g~~G-~lv~~~~~l  363 (371)
T PLN02275        291 RTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIGELVKD------GKNG-LLFSSSSEL  363 (371)
T ss_pred             EcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEEecCCChHHHccC------CCCe-EEECCHHHH
Confidence            55 6889999999999999996422  1 33 7889999999999998765444443321      6677 777788887


Q ss_pred             HHHHHHH
Q 002729          850 EERAVSL  856 (887)
Q Consensus       850 ~~~a~~l  856 (887)
                      .+...+|
T Consensus       364 a~~i~~l  370 (371)
T PLN02275        364 ADQLLEL  370 (371)
T ss_pred             HHHHHHh
Confidence            7766554

>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional

Probab=99.11  E-value=2.5e-09  Score=116.35  Aligned_cols=304  Identities=14%  Similarity=0.136  Sum_probs=169.1

Q ss_pred             ceeeeecCCCCCChhHHhhhHHhhcCCCCCcEEEEEecCCCCChHHHHHHHhhcCce--EECCCC---C-----------
Q 002729          537 LRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHF--VDVSAM---S-----------  600 (887)
Q Consensus       537 lriGyvs~d~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~-----------  600 (887)
                      .||=+++...+.|-.  ....+.+.+...++||++........   ...++..--++  .+....   +           
T Consensus         2 ~~i~i~~~g~gG~~~--~~~~la~~L~~~g~ev~vv~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~   76 (357)
T PRK00726          2 KKILLAGGGTGGHVF--PALALAEELKKRGWEVLYLGTARGME---ARLVPKAGIEFHFIPSGGLRRKGSLANLKAPFKL   76 (357)
T ss_pred             cEEEEEcCcchHhhh--HHHHHHHHHHhCCCEEEEEECCCchh---hhccccCCCcEEEEeccCcCCCChHHHHHHHHHH
Confidence            356666655555543  33345556666678988876533111   11222211122  222111   1           


Q ss_pred             ---HHHHHHHHHhCCCeEEEecCCcCCCCchhhhhc--CCCceEEeccc-cCCCCCCCcccEEEecCccCCCCcC--CCC
Q 002729          601 ---SDMIAKLINEDKIQILINLNGYTKGARNEIFAM--QPAPIQVSYMG-FPGTTGASYIDYLVTDEFVSPLRYA--HIY  672 (887)
Q Consensus       601 ---~~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~~--r~apvq~~~~g-~~~t~g~~~~d~~~~d~~~~p~~~~--~~~  672 (887)
                         ...+.+.|++.++||+|--+.++.  -...++.  ...|+.++-.. .|+  ....+-|..+|.++......  ...
T Consensus        77 ~~~~~~~~~~ik~~~pDvv~~~~~~~~--~~~~~~~~~~~~p~v~~~~~~~~~--~~~r~~~~~~d~ii~~~~~~~~~~~  152 (357)
T PRK00726         77 LKGVLQARKILKRFKPDVVVGFGGYVS--GPGGLAARLLGIPLVIHEQNAVPG--LANKLLARFAKKVATAFPGAFPEFF  152 (357)
T ss_pred             HHHHHHHHHHHHhcCCCEEEECCCcch--hHHHHHHHHcCCCEEEEcCCCCcc--HHHHHHHHHhchheECchhhhhccC
Confidence               134567788899999975543331  1112222  33566543111 111  01112233344443322111  122


Q ss_pred             ccceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCCC--CCCHHHH-HHHHHHHhhcCCceEEEec
Q 002729          673 SEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQLY--KMDPEIF-NTWCNILRRVPNSALWLLR  749 (887)
Q Consensus       673 ~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~--k~~~~~~-~~~~~il~~~p~~~l~~~~  749 (887)
                      ..++..+|+......+        .+  ...+..++++++.++++.+++..  |....++ +++.++... | -++++.|
T Consensus       153 ~~~i~vi~n~v~~~~~--------~~--~~~~~~~~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~~~~~-~-~~~~~~G  220 (357)
T PRK00726        153 KPKAVVTGNPVREEIL--------AL--AAPPARLAGREGKPTLLVVGGSQGARVLNEAVPEALALLPEA-L-QVIHQTG  220 (357)
T ss_pred             CCCEEEECCCCChHhh--------cc--cchhhhccCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhhC-c-EEEEEcC
Confidence            3566666664322111        01  11234567776666666666543  4333444 777766543 4 4566777


Q ss_pred             CChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCCchhHHHHHHhCCceeeecccch---hhh
Q 002729          750 FPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKM---ATR  826 (887)
Q Consensus       750 ~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~---~~r  826 (887)
                      .++  .+.+.+... .|+.   |.|.|.+  .++..++..+|+++-+   +|+.|++|||++|+|||+.+....   ...
T Consensus       221 ~g~--~~~~~~~~~-~~~~---v~~~g~~--~~~~~~~~~~d~~i~~---~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~  289 (357)
T PRK00726        221 KGD--LEEVRAAYA-AGIN---AEVVPFI--DDMAAAYAAADLVICR---AGASTVAELAAAGLPAILVPLPHAADDHQT  289 (357)
T ss_pred             CCc--HHHHHHHhh-cCCc---EEEeehH--hhHHHHHHhCCEEEEC---CCHHHHHHHHHhCCCEEEecCCCCCcCcHH
Confidence            765  345555555 7773   9999987  5677888999999953   357889999999999998864211   111


Q ss_pred             hHHHHHHhcCCCCcccc-CC--HHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 002729          827 VAGSLCLATGLGEEMIV-NS--MKEYEERAVSLALDRQKLQALTNKLKSV  873 (887)
Q Consensus       827 ~~~~~l~~~g~~~~~~~-~~--~~~y~~~a~~l~~d~~~~~~~~~~~~~~  873 (887)
                      .-+..+...|..- ++. .+  ++++.+...++.+|++.++++++..++.
T Consensus       290 ~~~~~i~~~~~g~-~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~  338 (357)
T PRK00726        290 ANARALVDAGAAL-LIPQSDLTPEKLAEKLLELLSDPERLEAMAEAARAL  338 (357)
T ss_pred             HHHHHHHHCCCEE-EEEcccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhc
Confidence            1234455556633 443 34  8999999999999999999999988765

>PRK13608 diacylglycerol glucosyltransferase; Provisional

Probab=99.09  E-value=1e-09  Score=120.05  Aligned_cols=157  Identities=15%  Similarity=0.098  Sum_probs=110.3

Q ss_pred             CCCCCCCCCCc-EEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEec-CChhhHHHHHHHHHHcCCCCCcEEEcCCC
Q 002729          703 KRSDYGLPEDK-FIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLR-FPAAGEMRLRAYAVAQGVQPDQIIFTDVA  778 (887)
Q Consensus       703 ~r~~~~l~~~~-~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~-~~~~~~~~l~~~~~~~g~~~~r~~~~~~~  778 (887)
                      .|..+|++++. +++...+++  .|....+++.+   ++..|+.++++++ .++...+.+.+.   .+. .++|.|.|++
T Consensus       192 ~~~~~~l~~~~~~ilv~~G~lg~~k~~~~li~~~---~~~~~~~~~vvv~G~~~~l~~~l~~~---~~~-~~~v~~~G~~  264 (391)
T PRK13608        192 WLIDNNLDPDKQTILMSAGAFGVSKGFDTMITDI---LAKSANAQVVMICGKSKELKRSLTAK---FKS-NENVLILGYT  264 (391)
T ss_pred             HHHHcCCCCCCCEEEEECCCcccchhHHHHHHHH---HhcCCCceEEEEcCCCHHHHHHHHHH---hcc-CCCeEEEecc
Confidence            45678887654 344445554  47777777765   3455777776654 333223444433   233 3579999987


Q ss_pred             CcHHHHHhccCCcEEecCCCCCCchhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhc
Q 002729          779 MKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLAL  858 (887)
Q Consensus       779 ~~~~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l~~  858 (887)
                      .  +...+|..+|+++-   -+||+|+.|||++|+|+|+..-..-.+...+-++...|..  ++..|.++.++....|.+
T Consensus       265 ~--~~~~~~~~aDl~I~---k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G~g--~~~~~~~~l~~~i~~ll~  337 (391)
T PRK13608        265 K--HMNEWMASSQLMIT---KPGGITISEGLARCIPMIFLNPAPGQELENALYFEEKGFG--KIADTPEEAIKIVASLTN  337 (391)
T ss_pred             c--hHHHHHHhhhEEEe---CCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhCCcE--EEeCCHHHHHHHHHHHhc
Confidence            3  56778899999985   2578999999999999998742222344555667777774  456899999999999999


Q ss_pred             CHHHHHHHHHHHHhh
Q 002729          859 DRQKLQALTNKLKSV  873 (887)
Q Consensus       859 d~~~~~~~~~~~~~~  873 (887)
                      |++.+++|+++.++.
T Consensus       338 ~~~~~~~m~~~~~~~  352 (391)
T PRK13608        338 GNEQLTNMISTMEQD  352 (391)
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999999875

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=99.08  E-value=4.3e-08  Score=112.62  Aligned_cols=218  Identities=12%  Similarity=0.167  Sum_probs=180.7

Q ss_pred             hHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCC----HHHHHHHHHHHHHcCChHHHHHH
Q 002729          151 VQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL-KPTF----PDAYLNLGNVYKALGMPQEAIMC  225 (887)
Q Consensus       151 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~----~~~~~~l~~~~~~~g~~~~A~~~  225 (887)
                      -.+..+.|++.+..+|+....|..+.....+.++.++|.+..++++.. ++..    ..+|..+.++...-|.-+...+.
T Consensus      1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred             CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence            344566788888889999999999999999999999999999998874 3322    23666666666667777888889


Q ss_pred             HHHHHhhCCChhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--C
Q 002729          226 YQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS--H  303 (887)
Q Consensus       226 ~~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~  303 (887)
                      |+++.+.......+..|..+|...+++++|.++++.+++...+....|..++..+++.++-+.|..+++++++.-|.  +
T Consensus      1520 FeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH 1599 (1710)
T KOG1070|consen 1520 FERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH 1599 (1710)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh
Confidence            99988877667888888999999999999999999999877777888999999999998888999999999988777  6


Q ss_pred             hHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002729          304 PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRID  368 (887)
Q Consensus       304 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  368 (887)
                      .+.....+.+.++.|+.+.+..+|+..+...|...+.|+-++..-.++|+.+.+..+|++++.+.
T Consensus      1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred             HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence            77778888888888888888888888888888888888888888888888888888888887764

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.07  E-value=1.1e-06  Score=95.85  Aligned_cols=269  Identities=17%  Similarity=0.182  Sum_probs=155.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 002729            5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDID   84 (887)
Q Consensus         5 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~   84 (887)
                      .|....+.|..++|+.+|.+.-.        +-.+-..|...|.+++|.++.+.--++.  -...|+..+..+...++.+
T Consensus       806 vAvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di~  875 (1416)
T KOG3617|consen  806 VAVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDIE  875 (1416)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhccHH
Confidence            34556667778888888877643        2345566777888888888766432221  2457888899999999999


Q ss_pred             HHHHHHHHH----------HhcCCC----------cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002729           85 LAIRYYLVA----------IELRPN----------FADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNL  144 (887)
Q Consensus        85 ~A~~~~~~a----------l~~~p~----------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~  144 (887)
                      .|+++|+++          +..+|.          +...|...|..+...|+.+.|+.+|..+-.        |+.+..+
T Consensus       876 ~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------~fs~VrI  947 (1416)
T KOG3617|consen  876 AALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--------YFSMVRI  947 (1416)
T ss_pred             HHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--------hhhheee
Confidence            999999875          222332          455677778888889999999999987743        3334444


Q ss_pred             HHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCC--------------HH
Q 002729          145 MKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL------KPTF--------------PD  204 (887)
Q Consensus       145 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~~~~--------------~~  204 (887)
                      .+-+|+.++|..+.++     ..+..+.+.+++.|...|++.+|+..|.++...      ...+              +.
T Consensus       948 ~C~qGk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~ 1022 (1416)
T KOG3617|consen  948 KCIQGKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGS 1022 (1416)
T ss_pred             EeeccCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCch
Confidence            4444444444433322     233344444445555555554444444443221      0000              00


Q ss_pred             HHHHHH--------------HHHHHcCChHHHHHHHHHH--------H--hhCC--ChhHHhhHHHHHHHcCChHHHHHH
Q 002729          205 AYLNLG--------------NVYKALGMPQEAIMCYQRA--------V--QTRP--NAIAFGNLASTYYERGQADMAILY  258 (887)
Q Consensus       205 ~~~~l~--------------~~~~~~g~~~~A~~~~~~~--------~--~~~p--~~~~~~~la~~~~~~g~~~~A~~~  258 (887)
                      -....+              .+|.+.|.+.+|+++--+.        +  .+++  ++.....-+..+....+|++|..+
T Consensus      1023 d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~l 1102 (1416)
T KOG3617|consen 1023 DLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNL 1102 (1416)
T ss_pred             hHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHH
Confidence            011111              2333334444443321110        0  1122  366666777777777777777766


Q ss_pred             HHHHH------hc----------------CC------C---cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002729          259 YKQAI------GC----------------DP------R---FLEAYNNLGNALKDVGRVDEAIQCYNQC  296 (887)
Q Consensus       259 ~~~~l------~~----------------~p------~---~~~~~~~la~~~~~~g~~~~A~~~~~~a  296 (887)
                      +-.+.      ++                .|      +   ....+..+|.++.++|.|..|-+-|.++
T Consensus      1103 L~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1103 LCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred             HHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence            54332      11                11      1   1246778899999999998888877665

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.07  E-value=2.6e-09  Score=114.18  Aligned_cols=107  Identities=13%  Similarity=0.161  Sum_probs=55.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 002729            4 ALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDI   83 (887)
Q Consensus         4 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~   83 (887)
                      ..|..++..|+|++|+..|++++..+|.++.+++.+|.++...|++++|+..++++++++|.++.+++.+|.++...|++
T Consensus         7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~   86 (356)
T PLN03088          7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY   86 (356)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence            34455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 002729           84 DLAIRYYLVAIELRPNFADAWSNLASA  110 (887)
Q Consensus        84 ~~A~~~~~~al~~~p~~~~~~~~la~~  110 (887)
                      ++|+..|+++++++|++..+...++.+
T Consensus        87 ~eA~~~~~~al~l~P~~~~~~~~l~~~  113 (356)
T PLN03088         87 QTAKAALEKGASLAPGDSRFTKLIKEC  113 (356)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            555555555555555544444444333

>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase

Probab=99.06  E-value=3.7e-09  Score=114.74  Aligned_cols=158  Identities=18%  Similarity=0.235  Sum_probs=105.5

Q ss_pred             CCCCCCCCCcEEEEecCCCC--CCCHH-HHHHHHHHHhhcCCceEEE-ecCChhhHHHHHHHHHHcCCCCCcEEEcCCCC
Q 002729          704 RSDYGLPEDKFIFACFNQLY--KMDPE-IFNTWCNILRRVPNSALWL-LRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAM  779 (887)
Q Consensus       704 r~~~~l~~~~~~~~~~~~~~--k~~~~-~~~~~~~il~~~p~~~l~~-~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~  779 (887)
                      +..+|++++.++++++++..  |.... +++++.++...  +.++++ .|.++  .+.+++.+.+.|+ .++|.|..   
T Consensus       170 ~~~~~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~l~~~--~~~~~~~~g~~~--~~~l~~~~~~~~l-~~~v~~~~---  241 (348)
T TIGR01133       170 RERFGLREGKPTILVLGGSQGAKILNELVPKALAKLAEK--GIQIVHQTGKND--LEKVKNVYQELGI-EAIVTFID---  241 (348)
T ss_pred             hhhcCCCCCCeEEEEECCchhHHHHHHHHHHHHHHHhhc--CcEEEEECCcch--HHHHHHHHhhCCc-eEEecCcc---
Confidence            44678888888877776543  44333 33566555432  334433 34332  4678888888887 46666662   


Q ss_pred             cHHHHHhccCCcEEecCCCCCCchhHHHHHHhCCceeeecccchhh--hhHHHHHHhcCCCCcccc-C--CHHHHHHHHH
Q 002729          780 KQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMAT--RVAGSLCLATGLGEEMIV-N--SMKEYEERAV  854 (887)
Q Consensus       780 ~~~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~~~--r~~~~~l~~~g~~~~~~~-~--~~~~y~~~a~  854 (887)
                       .+...+|..+|+++-+   +|++|++|||++|+|+|+.+-+...+  +....++...|..- ++- .  +.+++.+...
T Consensus       242 -~~~~~~l~~ad~~v~~---~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~-~~~~~~~~~~~l~~~i~  316 (348)
T TIGR01133       242 -ENMAAAYAAADLVISR---AGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGL-VIRQKELLPEKLLEALL  316 (348)
T ss_pred             -cCHHHHHHhCCEEEEC---CChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHCCCEE-EEecccCCHHHHHHHHH
Confidence             2667788999999953   46788999999999999875432222  22334566644433 332 2  4899999999


Q ss_pred             HHhcCHHHHHHHHHHHHhhc
Q 002729          855 SLALDRQKLQALTNKLKSVR  874 (887)
Q Consensus       855 ~l~~d~~~~~~~~~~~~~~~  874 (887)
                      .+..|++.++++++..++..
T Consensus       317 ~ll~~~~~~~~~~~~~~~~~  336 (348)
T TIGR01133       317 KLLLDPANLEAMAEAARKLA  336 (348)
T ss_pred             HHHcCHHHHHHHHHHHHhcC
Confidence            99999999999999887653

RL J Bacteriol 1993 Mar;175(6):1841-3

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=99.05  E-value=4.5e-08  Score=96.88  Aligned_cols=300  Identities=16%  Similarity=0.196  Sum_probs=197.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHhh----CCC---hhHHhhHHH
Q 002729          175 LAGLFMESGDLNRALQYYKEAVKLKPTFP---DAYLNLGNVYKALGMPQEAIMCYQRAVQT----RPN---AIAFGNLAS  244 (887)
Q Consensus       175 la~~~~~~g~~~~A~~~~~~~l~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~---~~~~~~la~  244 (887)
                      .|.-++...++++|+..+.+.+..-.+..   ..+-.+..+...+|.+++++..--..++.    ...   -+++.+++.
T Consensus        12 ~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar   91 (518)
T KOG1941|consen   12 KGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLAR   91 (518)
T ss_pred             HHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555566666666665554332221   13334455666666666665543333221    111   566777777


Q ss_pred             HHHHcCChHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------hHHHHhHHHH
Q 002729          245 TYYERGQADMAILYYKQAIGCDPR-----FLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH------PQALTNLGNI  313 (887)
Q Consensus       245 ~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~  313 (887)
                      .+.+..++.+++.+-+..++....     -......++.++..++.++++++.|+++++...++      -.++..+|..
T Consensus        92 ~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgsl  171 (518)
T KOG1941|consen   92 SNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSL  171 (518)
T ss_pred             HHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHH
Confidence            777777777877777766643221     12455667888888888888888888888764332      2467788888


Q ss_pred             HHHcCChhHHHHHHHHHHhccCC----C------chhHhhHHHHHHHcCCHHHHHHHHHHHHhcC------CCCHHHHHH
Q 002729          314 YMEWNMLPAAASYYKATLAVTTG----L------SAPFNNLAVIYKQQGNYADAISCYNEVLRID------PLAADGLVN  377 (887)
Q Consensus       314 ~~~~g~~~~A~~~~~~~~~~~~~----~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~  377 (887)
                      +....++++|.-+..++.++...    +      ..+.+.++..+..+|....|.++.+++.++.      +.....+..
T Consensus       172 f~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~  251 (518)
T KOG1941|consen  172 FAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLC  251 (518)
T ss_pred             HHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence            88888888888888887766432    1      2346678888889999999999999887763      234557778


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHhCCCHHH-----HHHHHHHHHHcCCCC------h
Q 002729          378 RGNTYKEIGRVTDAIQDYIRAITIRPT------MAEAHANLASAYKDSGHVEA-----AIKSYKQALLLRPDF------P  440 (887)
Q Consensus       378 l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~-----A~~~~~~al~~~p~~------~  440 (887)
                      +|.+|...|+.+.|..-|+++......      ..+++...+.++....-..+     |++.-++++++...-      -
T Consensus       252 ~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vl  331 (518)
T KOG1941|consen  252 FADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVL  331 (518)
T ss_pred             HHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHH
Confidence            899999999999999999988765321      24566666666665544444     777777777653321      1


Q ss_pred             HHHHHHHHHhhhcCChhhHhHHHHHHHHHHHHHh
Q 002729          441 EATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQV  474 (887)
Q Consensus       441 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  474 (887)
                      ..+..+...|...|.-++-...+.++.+..+++.
T Consensus       332 K~hcrla~iYrs~gl~d~~~~h~~ra~~~~~e~~  365 (518)
T KOG1941|consen  332 KLHCRLASIYRSKGLQDELRAHVVRAHECVEETE  365 (518)
T ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence            2345677778777877777777777777666653

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.04  E-value=4.2e-08  Score=98.34  Aligned_cols=182  Identities=14%  Similarity=0.030  Sum_probs=137.3

Q ss_pred             CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHH
Q 002729           31 LRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAE---CYGNMANAWKEKGDIDLAIRYYLVAIELRPNF---ADAW  104 (887)
Q Consensus        31 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~  104 (887)
                      .++..++..|..++..|++++|++.|++++...|..+.   +.+.+|.++++.+++++|+..+++.++.+|++   +.++
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~  109 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL  109 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence            35777889999999999999999999999999998754   45889999999999999999999999998875   4577


Q ss_pred             HHHHHHHHHcC---------------C---hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 002729          105 SNLASAYMRKG---------------R---LNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP  166 (887)
Q Consensus       105 ~~la~~~~~~g---------------~---~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  166 (887)
                      +.+|.++...+               +   ..+|+..|++.++..|+...+-              +|...+..+.   .
T Consensus       110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~--------------~A~~rl~~l~---~  172 (243)
T PRK10866        110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTT--------------DATKRLVFLK---D  172 (243)
T ss_pred             HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHH--------------HHHHHHHHHH---H
Confidence            88887754443               1   3568889999999999875321              1111111110   0


Q ss_pred             ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002729          167 TFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF---PDAYLNLGNVYKALGMPQEAIMCYQRA  229 (887)
Q Consensus       167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~  229 (887)
                      .-..--...+..|.+.|.+..|+.-++.+++..|+.   .+++..++..|...|..++|......+
T Consensus       173 ~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l  238 (243)
T PRK10866        173 RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII  238 (243)
T ss_pred             HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            111223467888889999999999999999888775   457888889999999999988876654

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.04  E-value=3e-05  Score=80.34  Aligned_cols=403  Identities=17%  Similarity=0.116  Sum_probs=223.5

Q ss_pred             HHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcC---CCc----H
Q 002729           35 NLLLLGAIYYQLH--DYDMCIARNEEALRLEPRF---AECYGNMANAWK-EKGDIDLAIRYYLVAIELR---PNF----A  101 (887)
Q Consensus        35 ~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~---p~~----~  101 (887)
                      ++..+|..+...|  +..+++++++......|.+   +.+...+|..++ -..+++.|...++++..+.   |+.    .
T Consensus         9 aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf   88 (629)
T KOG2300|consen    9 ALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKF   88 (629)
T ss_pred             HHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhh
Confidence            4444555555555  5556666666555555443   334445554433 3455666666666655432   221    2


Q ss_pred             HHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHhh-CCC---hHHHH
Q 002729          102 DAWSNLASAYMRKG-RLNEAAQCCRQALALNPLLVD----AHSNLGNLMKAQGLVQEAYSCYLEALRI-QPT---FAIAW  172 (887)
Q Consensus       102 ~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~---~~~~~  172 (887)
                      ++...++.+|.... .+..|...+++++++....+.    ..+.++++..-..++..|.+.+.-..+. ++.   .....
T Consensus        89 ~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~  168 (629)
T KOG2300|consen   89 QAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRML  168 (629)
T ss_pred             HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHH
Confidence            34455566665555 556666666666666544332    3445566666666666666653221111 110   01111


Q ss_pred             HHH--HHHHHHcCC---HHHHHHHHHHHHhhCCCCHH-------HHHHHH-HHHHHcCChHHHHHHHHHHHhh----C--
Q 002729          173 SNL--AGLFMESGD---LNRALQYYKEAVKLKPTFPD-------AYLNLG-NVYKALGMPQEAIMCYQRAVQT----R--  233 (887)
Q Consensus       173 ~~l--a~~~~~~g~---~~~A~~~~~~~l~~~~~~~~-------~~~~l~-~~~~~~g~~~~A~~~~~~~~~~----~--  233 (887)
                      +.+  +.+.....+   ...+.....++.+....++.       .|..+- ..|...|+...+...++++-..    .  
T Consensus       169 ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~  248 (629)
T KOG2300|consen  169 FTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTS  248 (629)
T ss_pred             HHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCC
Confidence            111  122222222   23333333444433322221       222222 2233446655555555443321    0  


Q ss_pred             -----------CChh--HHhhH----HHHH-------HHcCChHHHHHHHHHHHhc------CCCcHH--------HHHH
Q 002729          234 -----------PNAI--AFGNL----ASTY-------YERGQADMAILYYKQAIGC------DPRFLE--------AYNN  275 (887)
Q Consensus       234 -----------p~~~--~~~~l----a~~~-------~~~g~~~~A~~~~~~~l~~------~p~~~~--------~~~~  275 (887)
                                 |...  .|.-.    +.+|       ...|-+++|.++-++++..      .+....        .+..
T Consensus       249 ~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~  328 (629)
T KOG2300|consen  249 SRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEH  328 (629)
T ss_pred             CCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHH
Confidence                       1111  11000    1111       2345567777777776632      111111        2334


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcC---CC-------ChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCC-C--chhHh
Q 002729          276 LGNALKDVGRVDEAIQCYNQCLSLQ---PS-------HPQALTNLGNIYMEWNMLPAAASYYKATLAVTTG-L--SAPFN  342 (887)
Q Consensus       276 la~~~~~~g~~~~A~~~~~~al~~~---p~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~--~~~~~  342 (887)
                      +..+-.-.|++.+|++....+.+..   |.       .+.+.+.+|......+.++.|...|..+.+.... +  .....
T Consensus       329 iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nl  408 (629)
T KOG2300|consen  329 IVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNL  408 (629)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            4556666799999999888887753   43       2446777888888889999999999998877543 2  23355


Q ss_pred             hHHHHHHHcCCHHHHHHHHHHHHhcCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------cH
Q 002729          343 NLAVIYKQQGNYADAISCYNEVLRIDPLA----------ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT------MA  406 (887)
Q Consensus       343 ~la~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~  406 (887)
                      ++|..|...|+-+.-.+.++..   +|.+          ..+++..|...+..+++.||...+.+.+++...      ..
T Consensus       409 nlAi~YL~~~~~ed~y~~ld~i---~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a  485 (629)
T KOG2300|consen  409 NLAISYLRIGDAEDLYKALDLI---GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTA  485 (629)
T ss_pred             hHHHHHHHhccHHHHHHHHHhc---CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHH
Confidence            7899999988766655554443   4432          236777888889999999999999999987521      12


Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCh
Q 002729          407 EAHANLASAYKDSGHVEAAIKSYKQALLLRPDFP  440 (887)
Q Consensus       407 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  440 (887)
                      -.+..|+.+....|+..++.+..+-++++..+.+
T Consensus       486 ~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~  519 (629)
T KOG2300|consen  486 CSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIP  519 (629)
T ss_pred             HHHHHHHHHHHHhcchHHHHhccchHHHHHhcCC
Confidence            3456688888999999999999988887654433

>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A

Probab=99.03  E-value=3.3e-10  Score=103.88  Aligned_cols=129  Identities=17%  Similarity=0.180  Sum_probs=87.8

Q ss_pred             cEEEEecCCCC--CCCHHHHH-HHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccC
Q 002729          713 KFIFACFNQLY--KMDPEIFN-TWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSL  789 (887)
Q Consensus       713 ~~~~~~~~~~~--k~~~~~~~-~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~  789 (887)
                      .++||++++..  |....+++ +|.++.++.|+..|.|.|.++.   ++++.      ..++|.|.|.+  +++.+.++.
T Consensus         2 ~~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~~~---~l~~~------~~~~v~~~g~~--~e~~~~l~~   70 (135)
T PF13692_consen    2 ILYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNGPD---ELKRL------RRPNVRFHGFV--EELPEILAA   70 (135)
T ss_dssp             -EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECESS----HHCCH------HHCTEEEE-S---HHHHHHHHC
T ss_pred             cccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCCHH---HHHHh------cCCCEEEcCCH--HHHHHHHHh
Confidence            46788888875  88899999 9999999999999999997655   23333      24689999998  589999999


Q ss_pred             CcEEecCCCCC-C-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcC
Q 002729          790 ADLFLDTPLCN-A-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALD  859 (887)
Q Consensus       790 ~d~~ld~~~~~-g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l~~d  859 (887)
                      +||++.|+..+ + +++++|+|++|+|||+... .+.+     +....|..- ++..|.+++++...+|.+|
T Consensus        71 ~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-~~~~-----~~~~~~~~~-~~~~~~~~l~~~i~~l~~d  135 (135)
T PF13692_consen   71 ADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-GAEG-----IVEEDGCGV-LVANDPEELAEAIERLLND  135 (135)
T ss_dssp             -SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-HCHC-----HS---SEEE-E-TT-HHHHHHHHHHHHH-
T ss_pred             CCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-chhh-----heeecCCeE-EECCCHHHHHHHHHHHhcC
Confidence            99999997643 3 6889999999999999776 2221     122224444 6689999999999999876

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.02  E-value=4.7e-09  Score=112.15  Aligned_cols=109  Identities=20%  Similarity=0.265  Sum_probs=99.7

Q ss_pred             HhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCC
Q 002729          341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG  420 (887)
Q Consensus       341 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  420 (887)
                      +...|..++..|++++|+.+|+++++++|.++.+++.+|.++..+|++++|+..++++++++|+++.+++.+|.+|..+|
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            34557778889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCChHHHHHHHHH
Q 002729          421 HVEAAIKSYKQALLLRPDFPEATCNLLHT  449 (887)
Q Consensus       421 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~  449 (887)
                      ++++|+..|+++++++|+++.+...+..+
T Consensus        85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~  113 (356)
T PLN03088         85 EYQTAKAALEKGASLAPGDSRFTKLIKEC  113 (356)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            99999999999999999998877665443

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.01  E-value=3.4e-08  Score=96.76  Aligned_cols=171  Identities=20%  Similarity=0.215  Sum_probs=114.2

Q ss_pred             hhHHHHHHHhcCCHHHHHHHHHHHHhhCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHH
Q 002729            2 HMALAHQMYKSGSYKQALEHSNSVYERNPLR---TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF---AECYGNMAN   75 (887)
Q Consensus         2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~   75 (887)
                      ++..|..+++.|+|.+|+..|+++....|.+   ..+.+.+|.++++.|++++|+..+++.++..|++   +.+++.+|.
T Consensus         8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~   87 (203)
T PF13525_consen    8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL   87 (203)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence            4678889999999999999999998887754   6788889999999999999999999999888875   467888888


Q ss_pred             HHHHcC-----------CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002729           76 AWKEKG-----------DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNL  144 (887)
Q Consensus        76 ~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~  144 (887)
                      +++...           ...+|+..|+..++..|++..+              .+|...+..+..   ....--+.+|..
T Consensus        88 ~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~--------------~~A~~~l~~l~~---~la~~e~~ia~~  150 (203)
T PF13525_consen   88 SYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYA--------------EEAKKRLAELRN---RLAEHELYIARF  150 (203)
T ss_dssp             HHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTH--------------HHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred             HHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHH--------------HHHHHHHHHHHH---HHHHHHHHHHHH
Confidence            766543           2346777777777777774321              111111111100   011223456777


Q ss_pred             HHHcCChHHHHHHHHHHHhhCCChH---HHHHHHHHHHHHcCCHHHHH
Q 002729          145 MKAQGLVQEAYSCYLEALRIQPTFA---IAWSNLAGLFMESGDLNRAL  189 (887)
Q Consensus       145 ~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~  189 (887)
                      |.+.|.+..|+..++.+++..|+..   .++..++..|.+.|..+.|.
T Consensus       151 Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  151 YYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            8888888888888888888777653   46677778888888777443

>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases

Probab=99.00  E-value=3.2e-09  Score=120.49  Aligned_cols=158  Identities=16%  Similarity=0.082  Sum_probs=115.1

Q ss_pred             CCCCCCCC--CCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEecCChh-hHHHHHHHHHHcCCCCCcEEEcCC
Q 002729          703 KRSDYGLP--EDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAA-GEMRLRAYAVAQGVQPDQIIFTDV  777 (887)
Q Consensus       703 ~r~~~~l~--~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~-~~~~l~~~~~~~g~~~~r~~~~~~  777 (887)
                      .|..+|++  ++.+++++++|+  .|..+.+++++.++.+.  +.+|+++|.++. ..+.+++.....   .++++|.+.
T Consensus       284 l~~~~g~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~--~~~lvi~G~g~~~~~~~~~~~~~~~---~~~v~~~~~  358 (476)
T cd03791         284 LQEELGLPVDPDAPLFGFVGRLTEQKGIDLLLEALPELLEL--GGQLVILGSGDPEYEEALRELAARY---PGRVAVLIG  358 (476)
T ss_pred             HHHHcCCCcCCCCCEEEEEeeccccccHHHHHHHHHHHHHc--CcEEEEEecCCHHHHHHHHHHHHhC---CCcEEEEEe
Confidence            46778886  677888888887  58899999999988764  388999987643 234555555554   578888766


Q ss_pred             CCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCC------CCcccc--CCHHH
Q 002729          778 AMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGL------GEEMIV--NSMKE  848 (887)
Q Consensus       778 ~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~------~~~~~~--~~~~~  848 (887)
                      .+.+.....|+.+|++|-|+.++| |++.+|||++|+|||+.....+.+-+..      |.      ++ ++.  .|.++
T Consensus       359 ~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~------~~~~~~~~~G-~~~~~~~~~~  431 (476)
T cd03791         359 YDEALAHLIYAGADFFLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVID------YNEDTGEGTG-FVFEGYNADA  431 (476)
T ss_pred             CCHHHHHHHHHhCCEEECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeC------CcCCCCCCCe-EEeCCCCHHH
Confidence            665556678999999999988887 9999999999999997665555543332      22      34 443  56788


Q ss_pred             HHHHHHHHh---cCHHHHHHHHHHHHh
Q 002729          849 YEERAVSLA---LDRQKLQALTNKLKS  872 (887)
Q Consensus       849 y~~~a~~l~---~d~~~~~~~~~~~~~  872 (887)
                      +.+...++.   .+++.+.+++++..+
T Consensus       432 l~~~i~~~l~~~~~~~~~~~~~~~~~~  458 (476)
T cd03791         432 LLAALRRALALYRDPEAWRKLQRNAMA  458 (476)
T ss_pred             HHHHHHHHHHHHcCHHHHHHHHHHHhc
Confidence            877777665   477777777766554

Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.

>PRK14098 glycogen synthase; Provisional

Probab=99.00  E-value=3.8e-09  Score=118.09  Aligned_cols=159  Identities=11%  Similarity=0.070  Sum_probs=114.7

Q ss_pred             CCCCCCCC--CCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEecCChh-hHHHHHHHHHHcCCCCCcEEEcCC
Q 002729          703 KRSDYGLP--EDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAA-GEMRLRAYAVAQGVQPDQIIFTDV  777 (887)
Q Consensus       703 ~r~~~~l~--~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~-~~~~l~~~~~~~g~~~~r~~~~~~  777 (887)
                      .+..+|++  ++.+++++++|+  .|..+.+++++.+++.  ++.+|+|+|.++. .++.+++.+++.   +++|.|.|.
T Consensus       295 l~~~lgl~~~~~~~~i~~vgRl~~~KG~d~li~a~~~l~~--~~~~lvivG~G~~~~~~~l~~l~~~~---~~~V~~~g~  369 (489)
T PRK14098        295 LLEEVGLPFDEETPLVGVIINFDDFQGAELLAESLEKLVE--LDIQLVICGSGDKEYEKRFQDFAEEH---PEQVSVQTE  369 (489)
T ss_pred             HHHHhCCCCccCCCEEEEeccccccCcHHHHHHHHHHHHh--cCcEEEEEeCCCHHHHHHHHHHHHHC---CCCEEEEEe
Confidence            34567886  356888998887  5999999999999875  4799999997764 256777777766   478999999


Q ss_pred             CCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCcccc--CCHHHHHHHHH
Q 002729          778 AMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAV  854 (887)
Q Consensus       778 ~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~--~~~~~y~~~a~  854 (887)
                      .+..+....|+.+|++|-|+-+++ |++.+|||++|+|+|+.......+-+..  +..-|-++ ++.  .|.+++.+...
T Consensus       370 ~~~~~~~~~~a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~--~~~~~~~G-~l~~~~d~~~la~ai~  446 (489)
T PRK14098        370 FTDAFFHLAIAGLDMLLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE--VSEDKGSG-FIFHDYTPEALVAKLG  446 (489)
T ss_pred             cCHHHHHHHHHhCCEEEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec--CCCCCCce-eEeCCCCHHHHHHHHH
Confidence            888888889999999999988888 9999999999987665443333221100  00002334 443  57788777655


Q ss_pred             H---HhcCHHHHHHHHHH
Q 002729          855 S---LALDRQKLQALTNK  869 (887)
Q Consensus       855 ~---l~~d~~~~~~~~~~  869 (887)
                      +   +..|++.+++++.+
T Consensus       447 ~~l~~~~~~~~~~~~~~~  464 (489)
T PRK14098        447 EALALYHDEERWEELVLE  464 (489)
T ss_pred             HHHHHHcCHHHHHHHHHH
Confidence            4   44788877777654

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.97  E-value=1.6e-07  Score=94.17  Aligned_cols=181  Identities=15%  Similarity=0.043  Sum_probs=145.4

Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH---HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH---HHH
Q 002729           65 RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADA---WSNLASAYMRKGRLNEAAQCCRQALALNPLLV---DAH  138 (887)
Q Consensus        65 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~  138 (887)
                      ..+..++..|..+...|++++|++.|++++...|..+.+   .+.+|.++++.+++++|+..+++.++..|+++   .++
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~  109 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL  109 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence            467788899999999999999999999999999987654   48899999999999999999999999988754   477


Q ss_pred             HHHHHHHHHcC------------------ChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002729          139 SNLGNLMKAQG------------------LVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKP  200 (887)
Q Consensus       139 ~~la~~~~~~g------------------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~  200 (887)
                      +.+|.++...+                  ...+|+..|++.++..|++..+              .+|...+..+..   
T Consensus       110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------~~A~~rl~~l~~---  172 (243)
T PRK10866        110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------TDATKRLVFLKD---  172 (243)
T ss_pred             HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------HHHHHHHHHHHH---
Confidence            88887754443                  1357889999999999987543              223222222211   


Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC----hhHHhhHHHHHHHcCChHHHHHHHHHH
Q 002729          201 TFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN----AIAFGNLASTYYERGQADMAILYYKQA  262 (887)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~la~~~~~~g~~~~A~~~~~~~  262 (887)
                      .-..--+..+..|.+.|.+..|+.-++.+++..|+    .+++..+..+|...|..++|.......
T Consensus       173 ~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l  238 (243)
T PRK10866        173 RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII  238 (243)
T ss_pred             HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            11333457889999999999999999999999887    788999999999999999998877654

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.97  E-value=2.8e-07  Score=106.24  Aligned_cols=215  Identities=15%  Similarity=0.091  Sum_probs=144.6

Q ss_pred             HHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCC----cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002729           18 ALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRL-EPR----FAECYGNMANAWKEKGDIDLAIRYYLV   92 (887)
Q Consensus        18 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~   92 (887)
                      ..+-|++.+..+|++...|........+.++.++|.+.+++++.. ++.    ....|..+-+....-|.-+.-.+.|++
T Consensus      1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred             CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence            345566666677777777777777777777777777777777653 332    123444444444445555666666777


Q ss_pred             HHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--hHH
Q 002729           93 AIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT--FAI  170 (887)
Q Consensus        93 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~  170 (887)
                      +.+... ....+..|..+|.+.+.+++|.++++.+++...+....|..++..+.++++-+.|...+.++++.-|.  +..
T Consensus      1523 Acqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~ 1601 (1710)
T KOG1070|consen 1523 ACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVE 1601 (1710)
T ss_pred             HHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHH
Confidence            666432 24466667777777777777777777777776666677777777777777777777777777776666  556


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 002729          171 AWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR  233 (887)
Q Consensus       171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  233 (887)
                      .....+.+-++.|+.+.+..+|+..+..+|.-.+.|.-+++.-.+.|+.+.+..+|++++...
T Consensus      1602 ~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1602 FISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred             HHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence            666667777777777777777777777777777777777777777777777777777776653

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.95  E-value=9.8e-07  Score=84.48  Aligned_cols=253  Identities=17%  Similarity=0.104  Sum_probs=132.3

Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHhhHHHHHHHcCChHHHHHH
Q 002729          179 FMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILY  258 (887)
Q Consensus       179 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~  258 (887)
                      ++-.|+|..++..-++..... ........+.+.|..+|++...+.......  .|...+...++......++.++-+.-
T Consensus        18 ~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~--~~~lqAvr~~a~~~~~e~~~~~~~~~   94 (299)
T KOG3081|consen   18 YFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK--ATPLQAVRLLAEYLELESNKKSILAS   94 (299)
T ss_pred             HHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc--CChHHHHHHHHHHhhCcchhHHHHHH
Confidence            334455555554444433322 334444455555555555543332222111  11122333333333333333333333


Q ss_pred             HHHHH-hc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCC
Q 002729          259 YKQAI-GC-DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTG  336 (887)
Q Consensus       259 ~~~~l-~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  336 (887)
                      +.+.+ .. ...+......-+.++.+.+++++|++.....     .+.++...-..++.+..+.+-|.+.++++.+.+.+
T Consensus        95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided  169 (299)
T KOG3081|consen   95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED  169 (299)
T ss_pred             HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH
Confidence            22222 11 1122223333445566666666666655542     22334444445555666666666666666555433


Q ss_pred             CchhHhhHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 002729          337 LSAPFNNLAVIYKQ----QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANL  412 (887)
Q Consensus       337 ~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  412 (887)
                      .  +...||..+.+    .+++.+|.-+|+++-+..|..+..+...+.+...+|++++|...++.++..++++++++.++
T Consensus       170 ~--tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl  247 (299)
T KOG3081|consen  170 A--TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL  247 (299)
T ss_pred             H--HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence            2  22233333322    24577777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHhCCCHHHH-HHHHHHHHHcCCCChH
Q 002729          413 ASAYKDSGHVEAA-IKSYKQALLLRPDFPE  441 (887)
Q Consensus       413 a~~~~~~g~~~~A-~~~~~~al~~~p~~~~  441 (887)
                      ..+-...|...++ .+...+.....|+.+-
T Consensus       248 iv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~  277 (299)
T KOG3081|consen  248 IVLALHLGKDAEVTERNLSQLKLSHPEHPF  277 (299)
T ss_pred             HHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence            7777777765444 3444555556666553

>PRK10125 putative glycosyl transferase; Provisional

Probab=98.93  E-value=6.4e-08  Score=105.87  Aligned_cols=265  Identities=9%  Similarity=0.025  Sum_probs=149.1

Q ss_pred             ceeeeecCCCCCChhHHhhhHHhhcCCCCCcEEE-EEecCCCCCh-----H----------HHHHHHhhcCceEECCC-C
Q 002729          537 LRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVF-CYALSPNDGT-----E----------WRQRTQSEAEHFVDVSA-M  599 (887)
Q Consensus       537 lriGyvs~d~~~h~~~~~~~~~~~~~~~~~~e~~-~~~~~~~~~~-----~----------~~~~~~~~~~~~~~~~~-~  599 (887)
                      +||=+|...++.-..+..+..+...+...++|+. +|..+.....     .          ....+-..-.+..+..+ .
T Consensus         1 mkil~i~~~l~~GGaeri~~~L~~~l~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (405)
T PRK10125          1 MNILQFNVRLAEGGAAGVALDLHQRALQQGLASHFVYGYGKGGKESVSHQNYPQVIKHTPRMTAMANIALFRLFNRDLFG   80 (405)
T ss_pred             CeEEEEEeeecCCchhHHHHHHHHHHHhcCCeEEEEEecCCCcccccccCCcceEEEecccHHHHHHHHHHHhcchhhcc
Confidence            4677777777777788888899999988899974 4554432211     0          01111111112233333 2


Q ss_pred             CHHHHHHHH-HhCCCeEEEecCCcCCCCch-hhh--------hcCCCceEEeccccCCCC--------------CC---C
Q 002729          600 SSDMIAKLI-NEDKIQILINLNGYTKGARN-EIF--------AMQPAPIQVSYMGFPGTT--------------GA---S  652 (887)
Q Consensus       600 ~~~~~~~~i-~~~~~dil~~~~~~~~~~~~-~~~--------~~r~apvq~~~~g~~~t~--------------g~---~  652 (887)
                      +-..+.+.| ...++||++-=..|...-.+ .++        ..+-.||..|.-.+..-|              +.   |
T Consensus        81 ~~~~~~~~i~~~~~pDviHlH~~~~~~~~~~~l~~~~~~~~~~~~~~piV~TlHd~~~~tg~c~~~~~C~~~~~~c~~Cp  160 (405)
T PRK10125         81 NFNELYRTITRTPGPVVLHFHVLHSYWLNLKSVVRFCEKVKNHKPDVTLVWTLHDHWSVTGRCAFTDGCEGWKTGCQKCP  160 (405)
T ss_pred             hHHHHHHHHhhccCCCEEEEecccCceecHHHHHHHHhhhhcccCCCCEEEecccccccCCCcCCCcccccccccCCCCC
Confidence            456777778 68899999422222110012 122        112369988832211111              00   1


Q ss_pred             c--------ccE-----------E-----EecCccCCCCc-----CCC-CccceeecCCccccCCCccccccCCCCCCCC
Q 002729          653 Y--------IDY-----------L-----VTDEFVSPLRY-----AHI-YSEKLVHVPHCYFVNDYKQKNMDVLDPNCQP  702 (887)
Q Consensus       653 ~--------~d~-----------~-----~~d~~~~p~~~-----~~~-~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~  702 (887)
                      .        +|.           +     ..+.++.|+..     ... -.+++..+|++........     . +...+
T Consensus       161 ~l~~~~~~~~d~~~~~~~~k~~~~~~~~~~~~~iV~~S~~l~~~~~~~~~~~~i~vI~NGid~~~~~~-----~-~~~~~  234 (405)
T PRK10125        161 TLNNYPPVKVDRAHQLVAGKRQLFREMLALGCQFISPSQHVADAFNSLYGPGRCRIINNGIDMATEAI-----L-AELPP  234 (405)
T ss_pred             CccCCCCCccchHHHHHHHHHHHHHHHhhcCcEEEEcCHHHHHHHHHHcCCCCEEEeCCCcCcccccc-----c-ccccc
Confidence            1        121           0     11334445442     001 1256666776543211100     0 00011


Q ss_pred             CCCCCCCCCCcEEEEecCC----CCCCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCC
Q 002729          703 KRSDYGLPEDKFIFACFNQ----LYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVA  778 (887)
Q Consensus       703 ~r~~~~l~~~~~~~~~~~~----~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~  778 (887)
                      .|    .+++.++++++++    ..|..+.+++++.++   .++.+|+++|.++...             .++|.+.|..
T Consensus       235 ~~----~~~~~~~il~v~~~~~~~~Kg~~~li~A~~~l---~~~~~L~ivG~g~~~~-------------~~~v~~~g~~  294 (405)
T PRK10125        235 VR----ETQGKPKIAVVAHDLRYDGKTDQQLVREMMAL---GDKIELHTFGKFSPFT-------------AGNVVNHGFE  294 (405)
T ss_pred             cc----cCCCCCEEEEEEeccccCCccHHHHHHHHHhC---CCCeEEEEEcCCCccc-------------ccceEEecCc
Confidence            11    1234445555554    347778888888764   3578999998754311             3568888876


Q ss_pred             C-cHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhh
Q 002729          779 M-KQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRV  827 (887)
Q Consensus       779 ~-~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~  827 (887)
                      . ..+....|+.+|+|+-|+.+.| |++++|||+||+|||+-.-...++-+
T Consensus       295 ~~~~~l~~~y~~aDvfV~pS~~Egfp~vilEAmA~G~PVVat~~gG~~Eiv  345 (405)
T PRK10125        295 TDKRKLMSALNQMDALVFSSRVDNYPLILCEALSIGVPVIATHSDAAREVL  345 (405)
T ss_pred             CCHHHHHHHHHhCCEEEECCccccCcCHHHHHHHcCCCEEEeCCCChHHhE
Confidence            4 4678889999999999988888 99999999999999976655555533

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.93  E-value=2.4e-08  Score=89.11  Aligned_cols=105  Identities=22%  Similarity=0.378  Sum_probs=87.2

Q ss_pred             hhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHHHH
Q 002729          339 APFNNLAVIYKQQGNYADAISCYNEVLRIDPLA---ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM---AEAHANL  412 (887)
Q Consensus       339 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l  412 (887)
                      ..++.+|..+...|++++|++.|+++++.+|++   ..+++.+|.++.+.|++++|+..|++++...|++   +.++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~   82 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL   82 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence            456777888888888888888888888887765   5678888888888899999999998888887774   5678888


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHHcCCCChHHH
Q 002729          413 ASAYKDSGHVEAAIKSYKQALLLRPDFPEAT  443 (887)
Q Consensus       413 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  443 (887)
                      |.++.+.|++++|...++++++..|+++.+.
T Consensus        83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  113 (119)
T TIGR02795        83 GMSLQELGDKEKAKATLQQVIKRYPGSSAAK  113 (119)
T ss_pred             HHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence            8999999999999999999999888876544

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.92  E-value=1.3e-07  Score=92.64  Aligned_cols=83  Identities=25%  Similarity=0.247  Sum_probs=63.4

Q ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHH
Q 002729           32 RTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF---AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF---ADAWS  105 (887)
Q Consensus        32 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~  105 (887)
                      ++..++..|..++..|+|.+|++.|++++...|..   ..+.+.+|.++++.|++++|+..+++.++..|++   +.+++
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y   83 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY   83 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence            46778888999999999999999999998887764   6788888999999999999999999998888775   34677


Q ss_pred             HHHHHHHHc
Q 002729          106 NLASAYMRK  114 (887)
Q Consensus       106 ~la~~~~~~  114 (887)
                      .+|.+++..
T Consensus        84 ~~g~~~~~~   92 (203)
T PF13525_consen   84 MLGLSYYKQ   92 (203)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            777766544

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=3.5e-08  Score=97.30  Aligned_cols=122  Identities=20%  Similarity=0.192  Sum_probs=106.0

Q ss_pred             hhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHH
Q 002729          320 LPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIG---RVTDAIQDYI  396 (887)
Q Consensus       320 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~  396 (887)
                      .+....-++.-+..+|++.+-|..||.+|..+|++..|...|.+++++.|++++.+..+|.++....   ...++...++
T Consensus       138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~  217 (287)
T COG4235         138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR  217 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence            3444556677778889999999999999999999999999999999999999999999998887653   4678899999


Q ss_pred             HHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChH
Q 002729          397 RAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE  441 (887)
Q Consensus       397 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  441 (887)
                      +++..+|++..+.+.||..++..|++.+|...++.+++..|.+..
T Consensus       218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~  262 (287)
T COG4235         218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP  262 (287)
T ss_pred             HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence            999999999999999999999999999999999999999887654

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.91  E-value=2.9e-08  Score=88.66  Aligned_cols=99  Identities=18%  Similarity=0.253  Sum_probs=51.4

Q ss_pred             hHHHHHHHhcCCHHHHHHHHHHHHhhCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHH
Q 002729            3 MALAHQMYKSGSYKQALEHSNSVYERNPLR---TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF---AECYGNMANA   76 (887)
Q Consensus         3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~   76 (887)
                      +.+|..+.+.|++++|++.|++++..+|++   ..+++.+|.++...|++++|+..|++++..+|++   +.++..+|.+
T Consensus         6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~   85 (119)
T TIGR02795         6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS   85 (119)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence            445555555555555555555555554433   3445555555555555555555555555544442   3445555555


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCcH
Q 002729           77 WKEKGDIDLAIRYYLVAIELRPNFA  101 (887)
Q Consensus        77 ~~~~g~~~~A~~~~~~al~~~p~~~  101 (887)
                      +...|++++|+..++++++..|++.
T Consensus        86 ~~~~~~~~~A~~~~~~~~~~~p~~~  110 (119)
T TIGR02795        86 LQELGDKEKAKATLQQVIKRYPGSS  110 (119)
T ss_pred             HHHhCChHHHHHHHHHHHHHCcCCh
Confidence            5555555555555555555555443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=98.91  E-value=2.7e-07  Score=91.48  Aligned_cols=229  Identities=18%  Similarity=0.183  Sum_probs=131.5

Q ss_pred             hHHHHHHHhcCCHHHHHHHHHHHHhhCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC--cHHHHHHH
Q 002729            3 MALAHQMYKSGSYKQALEHSNSVYERNPLR---TDNLLLLGAIYYQLHDYDMCIARNEEALRL----EPR--FAECYGNM   73 (887)
Q Consensus         3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~--~~~~~~~l   73 (887)
                      +..|..++.+.++++|+....+.+.+-.+.   ...+-.+..+...+|.|++++..--..+..    +..  ..+++.++
T Consensus        10 ~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnl   89 (518)
T KOG1941|consen   10 IEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNL   89 (518)
T ss_pred             HHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456777888888888888888877654322   223334556677778877776654433322    111  24567777


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHHHHHH
Q 002729           74 ANAWKEKGDIDLAIRYYLVAIELRPNF-----ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLL------VDAHSNLG  142 (887)
Q Consensus        74 a~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la  142 (887)
                      ++.+.+..++.+++.+-+..+......     ......++.++..++.++++++.|+++++...++      ..++..++
T Consensus        90 ar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lg  169 (518)
T KOG1941|consen   90 ARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLG  169 (518)
T ss_pred             HHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHH
Confidence            777777777777777776666553221     2455566777777777777777777776653222      12556666


Q ss_pred             HHHHHcCChHHHHHHHHHHHhhCC----Ch------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHH
Q 002729          143 NLMKAQGLVQEAYSCYLEALRIQP----TF------AIAWSNLAGLFMESGDLNRALQYYKEAVKLK------PTFPDAY  206 (887)
Q Consensus       143 ~~~~~~g~~~~A~~~~~~al~~~p----~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~------~~~~~~~  206 (887)
                      ..+....++++|.-+..++.++-.    ++      ..+++.++..+..+|..-.|.++.+++.++.      +-.....
T Consensus       170 slf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~  249 (518)
T KOG1941|consen  170 SLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCL  249 (518)
T ss_pred             HHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHH
Confidence            677777777777666666655421    11      1234444555555555555555555554431      1112233


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHh
Q 002729          207 LNLGNVYKALGMPQEAIMCYQRAVQ  231 (887)
Q Consensus       207 ~~l~~~~~~~g~~~~A~~~~~~~~~  231 (887)
                      ..++++|...|+.+.|..-|+++..
T Consensus       250 ~~~aDIyR~~gd~e~af~rYe~Am~  274 (518)
T KOG1941|consen  250 LCFADIYRSRGDLERAFRRYEQAMG  274 (518)
T ss_pred             HHHHHHHHhcccHhHHHHHHHHHHH
Confidence            4445555555555555555555443

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.90  E-value=1.6e-05  Score=85.82  Aligned_cols=409  Identities=15%  Similarity=0.160  Sum_probs=204.5

Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh--------------------cCCCcHH
Q 002729            9 MYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR--------------------LEPRFAE   68 (887)
Q Consensus         9 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------------------~~p~~~~   68 (887)
                      ....|+|+.|...++.. ...|+....|..++...+..|+.--|..+|...-.                    ...+-..
T Consensus       454 aid~~df~ra~afles~-~~~~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdgt~  532 (1636)
T KOG3616|consen  454 AIDDGDFDRATAFLESL-EMGPDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDGTD  532 (1636)
T ss_pred             ccccCchHHHHHHHHhh-ccCccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCch
Confidence            45679999998877764 66787777888888877777776655555533211                    1112233


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002729           69 CYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQ  148 (887)
Q Consensus        69 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~  148 (887)
                      .|...+.......+|.+|...|-+-     +..+   .-.-.|....++++|+.+.+..  -.|.........-..+...
T Consensus       533 fykvra~lail~kkfk~ae~ifleq-----n~te---~aigmy~~lhkwde~i~lae~~--~~p~~eklk~sy~q~l~dt  602 (1636)
T KOG3616|consen  533 FYKVRAMLAILEKKFKEAEMIFLEQ-----NATE---EAIGMYQELHKWDEAIALAEAK--GHPALEKLKRSYLQALMDT  602 (1636)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHhc-----ccHH---HHHHHHHHHHhHHHHHHHHHhc--CChHHHHHHHHHHHHHHhc
Confidence            4444555555555566665555321     1111   1122344445555555443211  1222222222222333334


Q ss_pred             CChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHc
Q 002729          149 GLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPT------------FPDAYLNLGNVYKAL  216 (887)
Q Consensus       149 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~------------~~~~~~~l~~~~~~~  216 (887)
                      |+-++|-++-     ....+.   ..-..+|.+.|...+|......--.+..+            ..+.|-.-|.+|.+.
T Consensus       603 ~qd~ka~elk-----~sdgd~---laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki  674 (1636)
T KOG3616|consen  603 GQDEKAAELK-----ESDGDG---LAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKI  674 (1636)
T ss_pred             Cchhhhhhhc-----cccCcc---HHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHh
Confidence            4444332211     011110   11233444555544443322111010000            012344445555555


Q ss_pred             CChHHHHHHHHHH------Hhh----CCC--hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002729          217 GMPQEAIMCYQRA------VQT----RPN--AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVG  284 (887)
Q Consensus       217 g~~~~A~~~~~~~------~~~----~p~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g  284 (887)
                      .++++|+++|++-      +++    .|.  ...-...|.-+...|+++.|+..|-++-        ....-..+....+
T Consensus       675 ~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~--------~~~kaieaai~ak  746 (1636)
T KOG3616|consen  675 HDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN--------CLIKAIEAAIGAK  746 (1636)
T ss_pred             hCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh--------hHHHHHHHHhhhh
Confidence            6666666665532      221    222  1122233455566667777766665442        1122233344455


Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHH
Q 002729          285 RVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEV  364 (887)
Q Consensus       285 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  364 (887)
                      ++.+|+.+++..-... .....|-.++.-|...|+++.|.++|.++-        ....-...|.+.|++++|.++-++.
T Consensus       747 ew~kai~ildniqdqk-~~s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da~kla~e~  817 (1636)
T KOG3616|consen  747 EWKKAISILDNIQDQK-TASGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLAEEC  817 (1636)
T ss_pred             hhhhhHhHHHHhhhhc-cccccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHHHHHHHHh
Confidence            6666666665443321 122344556667777777777777776542        2334456666777777776666555


Q ss_pred             HhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHH-------------HHH------H----hcCCCc-HHHHHHHHHHHHhC
Q 002729          365 LRIDPLA-ADGLVNRGNTYKEIGRVTDAIQDY-------------IRA------I----TIRPTM-AEAHANLASAYKDS  419 (887)
Q Consensus       365 l~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~-------------~~a------l----~~~p~~-~~~~~~la~~~~~~  419 (887)
                      ..  |+. ...|...+.-+-+.|++.+|.+.|             .+.      +    +..|+. .+.+..++.-|...
T Consensus       818 ~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~  895 (1636)
T KOG3616|consen  818 HG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAE  895 (1636)
T ss_pred             cC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhc
Confidence            32  322 223444455555555555444433             221      1    112322 45788899999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCChHHHHHHHHHhhhcCChhhHhHHH
Q 002729          420 GHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMF  463 (887)
Q Consensus       420 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~  463 (887)
                      |+...|.+.|-++-+.        ..-.++|...+-|++|.++-
T Consensus       896 g~lkaae~~flea~d~--------kaavnmyk~s~lw~dayria  931 (1636)
T KOG3616|consen  896 GDLKAAEEHFLEAGDF--------KAAVNMYKASELWEDAYRIA  931 (1636)
T ss_pred             cChhHHHHHHHhhhhH--------HHHHHHhhhhhhHHHHHHHH
Confidence            9999999999876432        23344566666677765543

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.90  E-value=1.9e-06  Score=86.57  Aligned_cols=288  Identities=19%  Similarity=0.089  Sum_probs=218.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHcC
Q 002729            5 LAHQMYKSGSYKQALEHSNSVYERNPLR--TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF-AECYGNMANAWKEKG   81 (887)
Q Consensus         5 la~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g   81 (887)
                      -|....-.|+-..|.++-.+.-+.-..+  +-+...-++...-.|+++.|.+-|+.++.. |.. .-.+..+-......|
T Consensus        90 tGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~G  168 (531)
T COG3898          90 TGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLG  168 (531)
T ss_pred             hhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcc
Confidence            3455667788899998888776544333  455566677888899999999999998853 322 222333333446789


Q ss_pred             CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHH---HHHHHHHH-HHHcCChHHH
Q 002729           82 DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALAL---NPLLVD---AHSNLGNL-MKAQGLVQEA  154 (887)
Q Consensus        82 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~p~~~~---~~~~la~~-~~~~g~~~~A  154 (887)
                      +.+.|+.+-+.+-+..|.-+.++.......+..|+++.|+++.+.....   .++..+   +-..-+.. -.-..+...|
T Consensus       169 areaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~A  248 (531)
T COG3898         169 AREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASA  248 (531)
T ss_pred             cHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHH
Confidence            9999999999999999999999999999999999999999999876543   222211   22222222 2223457889


Q ss_pred             HHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH---Hh
Q 002729          155 YSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRA---VQ  231 (887)
Q Consensus       155 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~  231 (887)
                      ...-.++.++.|+...+-..-+..+++.|+..++-.+++.+.+..|. +++    +..|....--+.++.-++++   .+
T Consensus       249 r~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~i----a~lY~~ar~gdta~dRlkRa~~L~s  323 (531)
T COG3898         249 RDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDI----ALLYVRARSGDTALDRLKRAKKLES  323 (531)
T ss_pred             HHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHH----HHHHHHhcCCCcHHHHHHHHHHHHh
Confidence            99999999999999999899999999999999999999999998876 333    33444443334444444444   44


Q ss_pred             hCCC-hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhc
Q 002729          232 TRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDV-GRVDEAIQCYNQCLSL  299 (887)
Q Consensus       232 ~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~  299 (887)
                      +.|+ .+.....+..-+..|++..|..--+.+....|... ++..++.+-... |+-.++...+.++++-
T Consensus       324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres-~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRES-AYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhh-HHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence            5666 88889999999999999999999999999998866 788888887665 9999999999999874

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.88  E-value=7.8e-08  Score=88.81  Aligned_cols=116  Identities=28%  Similarity=0.201  Sum_probs=65.2

Q ss_pred             hcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCChH
Q 002729           45 QLHDYDMCIARNEEALRLEPRF---AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF---ADAWSNLASAYMRKGRLN  118 (887)
Q Consensus        45 ~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~  118 (887)
                      ..++...+...++++++.+|+.   ..+.+.+|.++...|++++|...|++++...|+.   ..+...++.++...|+++
T Consensus        23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d  102 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD  102 (145)
T ss_pred             HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            4555555555556665555554   3445556666666666666666666666554332   234555666666666666


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002729          119 EAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEA  161 (887)
Q Consensus       119 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  161 (887)
                      +|+..++.. ...+..+.++..+|.++...|++++|...|+++
T Consensus       103 ~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen  103 EALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            666666442 223334445556666666666666666666554

>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor

Probab=98.87  E-value=8e-09  Score=114.86  Aligned_cols=167  Identities=16%  Similarity=0.154  Sum_probs=115.7

Q ss_pred             CCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCC----ceEEEecCCh----hhHHHHHHHHH----Hc----CC-
Q 002729          707 YGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPN----SALWLLRFPA----AGEMRLRAYAV----AQ----GV-  767 (887)
Q Consensus       707 ~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~----~~l~~~~~~~----~~~~~l~~~~~----~~----g~-  767 (887)
                      .+++.+.+++++.+|+  .|..+..++++.+++++.|+    .+|+++|.+.    .....+++.+.    +.    |. 
T Consensus       258 ~~~~~~~~~il~vgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~  337 (460)
T cd03788         258 RERLGGRKLIVGVDRLDYSKGIPERLLAFERLLERYPEWRGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTL  337 (460)
T ss_pred             HHhcCCCEEEEEecCccccCCHHHHHHHHHHHHHhChhhcCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCC
Confidence            3455677888888887  49999999999999999997    4677776432    11233443333    22    21 


Q ss_pred             CCCcEEE-cCCCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCc----eeeecccchhhhhHHHHHHhcCCCCcc
Q 002729          768 QPDQIIF-TDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLP----MITLPLEKMATRVAGSLCLATGLGEEM  841 (887)
Q Consensus       768 ~~~r~~~-~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvP----vvt~~g~~~~~r~~~~~l~~~g~~~~~  841 (887)
                      +-..|+| .|.++.++..++|+.+|+++-|+...| |++++|||+||+|    ||+-..      .|.+-.   |.++ +
T Consensus       338 ~~~~v~~~~g~v~~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~------~G~~~~---~~~g-~  407 (460)
T cd03788         338 DWTPVRYLYRSLPREELAALYRAADVALVTPLRDGMNLVAKEYVACQDDDPGVLILSEF------AGAAEE---LSGA-L  407 (460)
T ss_pred             CceeEEEEeCCCCHHHHHHHHHhccEEEeCccccccCcccceeEEEecCCCceEEEecc------ccchhh---cCCC-E
Confidence            1133554 577899999999999999999988888 9999999999999    553211      121111   3445 5


Q ss_pred             cc--CCHHHHHHHHHHHhcC-HHHHHHHHHHHHhhcccCCCCCcCCcc
Q 002729          842 IV--NSMKEYEERAVSLALD-RQKLQALTNKLKSVRLTCPLFDTARWV  886 (887)
Q Consensus       842 ~~--~~~~~y~~~a~~l~~d-~~~~~~~~~~~~~~~~~~~l~d~~~~~  886 (887)
                      ++  .|.+++.+...++.++ ++.++.+.++.++...   -||..+|+
T Consensus       408 lv~p~d~~~la~ai~~~l~~~~~e~~~~~~~~~~~v~---~~~~~~w~  452 (460)
T cd03788         408 LVNPYDIDEVADAIHRALTMPLEERRERHRKLREYVR---THDVQAWA  452 (460)
T ss_pred             EECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCHHHHH
Confidence            54  5899999988888874 5677777777777653   36655553

It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.87  E-value=6.2e-08  Score=95.58  Aligned_cols=121  Identities=26%  Similarity=0.262  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---hHHHHHHHH
Q 002729           83 IDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGL---VQEAYSCYL  159 (887)
Q Consensus        83 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~  159 (887)
                      .++-+.-++.-+..+|++.+-|..||.+|..+|++..|...|.+++++.|++++.+..++.++..+..   ..++...++
T Consensus       138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~  217 (287)
T COG4235         138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR  217 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence            34455556666677777777777777777777777777777777777777777777777777665433   456777777


Q ss_pred             HHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 002729          160 EALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFP  203 (887)
Q Consensus       160 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~  203 (887)
                      ++++.+|.+..+.+.++..+++.|++.+|...++.+++..|.+.
T Consensus       218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~  261 (287)
T COG4235         218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD  261 (287)
T ss_pred             HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence            77777777777777777777777777777777777777766543

>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed

Probab=98.85  E-value=1.3e-08  Score=111.73  Aligned_cols=158  Identities=15%  Similarity=0.138  Sum_probs=107.1

Q ss_pred             CCCCCCCCCCcEE-EEecC-CCC---CCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHc-CCCCCcEEEcC
Q 002729          703 KRSDYGLPEDKFI-FACFN-QLY---KMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQ-GVQPDQIIFTD  776 (887)
Q Consensus       703 ~r~~~~l~~~~~~-~~~~~-~~~---k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~-g~~~~r~~~~~  776 (887)
                      .|.++|++++.++ +...+ +..   ++.+.+++++..+.++.|+.++++++.++..++.+++...+. |+.   +.+..
T Consensus       176 ~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~---v~~~~  252 (380)
T PRK00025        176 ARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNPKRREQIEEALAEYAGLE---VTLLD  252 (380)
T ss_pred             HHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCChhhHHHHHHHHhhcCCCC---eEEEc
Confidence            4667899876554 33333 322   457888899988888889988888876444466777777777 663   55543


Q ss_pred             CCCcHHHHHhccCCcEEecCCCCCCchhHHHHHHhCCceeeecccchhhhhHHHHHH---hcCC----------CCcccc
Q 002729          777 VAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCL---ATGL----------GEEMIV  843 (887)
Q Consensus       777 ~~~~~~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~---~~g~----------~~~~~~  843 (887)
                          .+...+|+.+|+++-+    +|++++|||++|+|||+.+.-..-....+..+.   ..|+          ++ ++.
T Consensus       253 ----~~~~~~~~~aDl~v~~----sG~~~lEa~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~  323 (380)
T PRK00025        253 ----GQKREAMAAADAALAA----SGTVTLELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPE-LLQ  323 (380)
T ss_pred             ----ccHHHHHHhCCEEEEC----ccHHHHHHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchh-hcC
Confidence                3567789999999965    477788999999999987443222211111111   1122          23 333


Q ss_pred             --CCHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 002729          844 --NSMKEYEERAVSLALDRQKLQALTNKLKS  872 (887)
Q Consensus       844 --~~~~~y~~~a~~l~~d~~~~~~~~~~~~~  872 (887)
                        .|+++..+....+.+|++.++.+++.+++
T Consensus       324 ~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~  354 (380)
T PRK00025        324 EEATPEKLARALLPLLADGARRQALLEGFTE  354 (380)
T ss_pred             CCCCHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence              46789999999999999999999988643

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.85  E-value=1.4e-08  Score=80.24  Aligned_cols=67  Identities=37%  Similarity=0.535  Sum_probs=51.0

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCC
Q 002729          371 AADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG-HVEAAIKSYKQALLLRP  437 (887)
Q Consensus       371 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p  437 (887)
                      ++..|..+|.++...|++++|+..|+++++.+|+++.+++.+|.++..+| ++++|++.++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            45677777777777777777777777777777777777777777777777 57777777777777766

...

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.85  E-value=1.8e-05  Score=79.75  Aligned_cols=290  Identities=17%  Similarity=0.043  Sum_probs=222.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHc
Q 002729           38 LLGAIYYQLHDYDMCIARNEEALRLEPRF--AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF-ADAWSNLASAYMRK  114 (887)
Q Consensus        38 ~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~  114 (887)
                      .-|.+....|+-..|.+.-.+.-++-..+  +-+...-++.-.-.|++++|.+-|+.++. +|.. .--+..|-.--.+.
T Consensus        89 StGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~  167 (531)
T COG3898          89 STGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRL  167 (531)
T ss_pred             hhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhc
Confidence            44666777899999999988887654444  44556667778889999999999999986 3331 11233333344578


Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh---CCChH-----HHHHHHHHHHHHcCCHH
Q 002729          115 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI---QPTFA-----IAWSNLAGLFMESGDLN  186 (887)
Q Consensus       115 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~-----~~~~~la~~~~~~g~~~  186 (887)
                      |..+.|+.+-+.+....|....++...-...+..|+++.|+++.+.....   .++..     ..+...+... -.-+..
T Consensus       168 GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~-ldadp~  246 (531)
T COG3898         168 GAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL-LDADPA  246 (531)
T ss_pred             ccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH-hcCChH
Confidence            99999999999999999999999988889999999999999999876543   22221     1222222222 234688


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHhhHHHHHHHcCChHHHHHHHHHH---H
Q 002729          187 RALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQA---I  263 (887)
Q Consensus       187 ~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~~---l  263 (887)
                      .|...-.++.++.|+....-..-+..+.+.|+..++-.+++.+.+..|....+    ..|....--+.++.-++++   .
T Consensus       247 ~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gdta~dRlkRa~~L~  322 (531)
T COG3898         247 SARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGDTALDRLKRAKKLE  322 (531)
T ss_pred             HHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCCcHHHHHHHHHHHH
Confidence            89999999999999999988999999999999999999999999998885543    3344433334444444444   4


Q ss_pred             hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHc-CChhHHHHHHHHHHhcc
Q 002729          264 GCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEW-NMLPAAASYYKATLAVT  334 (887)
Q Consensus       264 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~  334 (887)
                      .+.|++.+.....+...+..|++..|..--+.+....|. ..++..++++.... |+-.++..++.+++..-
T Consensus       323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~AP  393 (531)
T COG3898         323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKAP  393 (531)
T ss_pred             hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence            679999999999999999999999999999999988876 45666777776655 99999999999998753

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.84  E-value=3.2e-06  Score=81.07  Aligned_cols=235  Identities=15%  Similarity=0.088  Sum_probs=98.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHH
Q 002729           40 GAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNE  119 (887)
Q Consensus        40 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  119 (887)
                      .+-++..|+|..++..-++..... ...+....+.+.|..+|.+..-+......-   .....+...++.....-++.++
T Consensus        15 iRn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~   90 (299)
T KOG3081|consen   15 IRNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKS   90 (299)
T ss_pred             HHHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHH
Confidence            344566677777766665544332 455556666666666666654433322211   1112333334444333344333


Q ss_pred             HHHHHHHHHHh-C-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002729          120 AAQCCRQALAL-N-PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVK  197 (887)
Q Consensus       120 A~~~~~~~l~~-~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~  197 (887)
                      -+.-..+.+.. . ..+......-+.++...|++++|++...+.     .+.++...-..++.+..+.+-|.+.++++.+
T Consensus        91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~  165 (299)
T KOG3081|consen   91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQ  165 (299)
T ss_pred             HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            33332222221 1 112223333344455555555555544431     1223333333444444455555555555444


Q ss_pred             hCCCCHHHHHHHHHHHHHc----CChHHHHHHHHHHHh-hCCChhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHH
Q 002729          198 LKPTFPDAYLNLGNVYKAL----GMPQEAIMCYQRAVQ-TRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEA  272 (887)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~-~~p~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~  272 (887)
                      .+.+  .++..|+..+.+.    +++.+|.-+|+++-+ ..|+....+..+.+...++++++|...++.++..+++++++
T Consensus       166 ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpet  243 (299)
T KOG3081|consen  166 IDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPET  243 (299)
T ss_pred             cchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHH
Confidence            3322  2233333333221    233344444444433 22223344444444444444444444444444444444444


Q ss_pred             HHHHHHHHHHcCC
Q 002729          273 YNNLGNALKDVGR  285 (887)
Q Consensus       273 ~~~la~~~~~~g~  285 (887)
                      +.++..+-...|.
T Consensus       244 L~Nliv~a~~~Gk  256 (299)
T KOG3081|consen  244 LANLIVLALHLGK  256 (299)
T ss_pred             HHHHHHHHHHhCC
Confidence            4444333333333

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.84  E-value=5e-06  Score=85.91  Aligned_cols=459  Identities=15%  Similarity=0.092  Sum_probs=269.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHH-HHhcCCHHHHHHHHHHHHhc-----CC----------CcH
Q 002729            4 ALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAI-YYQLHDYDMCIARNEEALRL-----EP----------RFA   67 (887)
Q Consensus         4 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~-----~p----------~~~   67 (887)
                      ..+...+..++|+..++++..+-..+..+...++..+.+ +++.|... -...+++...+     .|          +..
T Consensus        22 ~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq-~~~ll~el~aL~~~~~~~~~~~~gld~~~~t  100 (696)
T KOG2471|consen   22 CQAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQ-HSVLLKELEALTADADAPGDVSSGLSLKQGT  100 (696)
T ss_pred             HHHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccch-hHHHHHHHHHHHHhhccccchhcchhhhcch
Confidence            456667788999999999998887776665555555544 44444432 22222222111     11          235


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----cH-HHHHHHHHHHHHcCChHHHHHHHH---HHHHhC---C--C-
Q 002729           68 ECYGNMANAWKEKGDIDLAIRYYLVAIELRPN----FA-DAWSNLASAYMRKGRLNEAAQCCR---QALALN---P--L-  133 (887)
Q Consensus        68 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~-~~~~~la~~~~~~g~~~~A~~~~~---~~l~~~---p--~-  133 (887)
                      ..++..|.+++....+..|++........-..    .+ ..-...-..+....+.++|+.++.   +++...   +  + 
T Consensus       101 ~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~  180 (696)
T KOG2471|consen  101 VMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNH  180 (696)
T ss_pred             HHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence            67778888888888888888776665543211    11 112223334445556666665543   222210   0  0 


Q ss_pred             ------------------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHH
Q 002729          134 ------------------------LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRAL  189 (887)
Q Consensus       134 ------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  189 (887)
                                              ...+.......+....+...+..-.+.+.....+.+.+....+..++..|++.+|.
T Consensus       181 ~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~  260 (696)
T KOG2471|consen  181 IPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAM  260 (696)
T ss_pred             cchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHH
Confidence                                    01123333444555566666666666666666778888888899999999999998


Q ss_pred             HHHHHHH-hhCCC---C-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhh---------CC----------ChhHHhh
Q 002729          190 QYYKEAV-KLKPT---F-----PDAYLNLGNVYKALGMPQEAIMCYQRAVQT---------RP----------NAIAFGN  241 (887)
Q Consensus       190 ~~~~~~l-~~~~~---~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~p----------~~~~~~~  241 (887)
                      +.+...- ...+.   .     --.++++|.++++.|.|.-+..+|.++++.         .|          ..+..++
T Consensus       261 KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYN  340 (696)
T KOG2471|consen  261 KLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYN  340 (696)
T ss_pred             HHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHh
Confidence            8876542 12222   1     125688999999999999999999998851         11          2567788


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc---CCHHHHHHHHHH--H--------------Hhc---
Q 002729          242 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDV---GRVDEAIQCYNQ--C--------------LSL---  299 (887)
Q Consensus       242 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~--a--------------l~~---  299 (887)
                      .|..|...|++-.|.++|.++....-.++..|..++.++...   |-.++......+  .              ++.   
T Consensus       341 cG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~  420 (696)
T KOG2471|consen  341 CGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTY  420 (696)
T ss_pred             hhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccce
Confidence            899999999999999999999988888888999999888643   222222211111  0              000   


Q ss_pred             --CCC---ChHHHHhHHHHHHHcCCh-----hHHHHHHHHHHhc----------------------------cC-CC---
Q 002729          300 --QPS---HPQALTNLGNIYMEWNML-----PAAASYYKATLAV----------------------------TT-GL---  337 (887)
Q Consensus       300 --~p~---~~~~~~~l~~~~~~~g~~-----~~A~~~~~~~~~~----------------------------~~-~~---  337 (887)
                        .+.   -+..-..++.+..+.+-+     ..--..+.-+...                            .| ..   
T Consensus       421 ~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~  500 (696)
T KOG2471|consen  421 VELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSA  500 (696)
T ss_pred             eccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcch
Confidence              000   011111222222211100     0000001000000                            00 01   


Q ss_pred             --------chhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH-----HHHHcCCHHHHHHHHHHHH-----
Q 002729          338 --------SAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGN-----TYKEIGRVTDAIQDYIRAI-----  399 (887)
Q Consensus       338 --------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~al-----  399 (887)
                              ..++-.++.+-...|+.-.|+..-++.++.. +-..++..+|.     ++.-+.+..+|...+.--+     
T Consensus       501 ~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~~-~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~  579 (696)
T KOG2471|consen  501 FEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQLA-DLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDD  579 (696)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhhh-hhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcc
Confidence                    1124456677778899999999999988753 44445555544     4455677777776554311     


Q ss_pred             -h-----------------cCCC----------c-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--CChHHHH
Q 002729          400 -T-----------------IRPT----------M-----AEAHANLASAYKDSGHVEAAIKSYKQALLLRP--DFPEATC  444 (887)
Q Consensus       400 -~-----------------~~p~----------~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~  444 (887)
                       .                 ++|.          .     ...+++||.++.-+|++++|..++..+..+-+  .++.+..
T Consensus       580 f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~  659 (696)
T KOG2471|consen  580 FKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATV  659 (696)
T ss_pred             cccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHH
Confidence             0                 0111          1     23578899999999999999999999888877  5555555


Q ss_pred             HHHHHhhhcCChhhHhHHHH
Q 002729          445 NLLHTLQCVCSWEDRDRMFS  464 (887)
Q Consensus       445 ~l~~~~~~~g~~~~a~~~~~  464 (887)
                      .-...-...|+..++...++
T Consensus       660 lavyidL~~G~~q~al~~lk  679 (696)
T KOG2471|consen  660 LAVYIDLMLGRSQDALARLK  679 (696)
T ss_pred             HHHHHHHhcCCCcchHHHHH
Confidence            44444555666666554443

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.84  E-value=3.5e-08  Score=83.87  Aligned_cols=99  Identities=34%  Similarity=0.619  Sum_probs=82.8

Q ss_pred             hHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhC
Q 002729          340 PFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDS  419 (887)
Q Consensus       340 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  419 (887)
                      ++..+|..+...|++++|+..++++++..|.+..++..+|.++...|++++|++.++++++..|.+..++..++.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            35677788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCHHHHHHHHHHHHHcCCC
Q 002729          420 GHVEAAIKSYKQALLLRPD  438 (887)
Q Consensus       420 g~~~~A~~~~~~al~~~p~  438 (887)
                      |++++|...++++++..|+
T Consensus        82 ~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          82 GKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HhHHHHHHHHHHHHccCCC
Confidence            8888888888888877663

>PHA01630 putative group 1 glycosyl transferase

Probab=98.84  E-value=2.9e-08  Score=104.95  Aligned_cols=141  Identities=10%  Similarity=0.065  Sum_probs=99.9

Q ss_pred             EEEEecCC--CCCCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCc
Q 002729          714 FIFACFNQ--LYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD  791 (887)
Q Consensus       714 ~~~~~~~~--~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d  791 (887)
                      ++++..++  ..|..+.++++|..+.++.|+.+++++|.++. ..++      .++. .   +.+.++.++...+|+.+|
T Consensus       143 ~vl~~~g~~~~~Kg~d~Li~A~~~l~~~~~~~~llivG~~~~-~~~l------~~~~-~---~~~~v~~~~l~~~y~~aD  211 (331)
T PHA01630        143 CVLAILPHSWDRKGGDIVVKIFHELQNEGYDFYFLIKSSNML-DPRL------FGLN-G---VKTPLPDDDIYSLFAGCD  211 (331)
T ss_pred             EEEEEeccccccCCHHHHHHHHHHHHhhCCCEEEEEEeCccc-chhh------cccc-c---eeccCCHHHHHHHHHhCC
Confidence            45444444  57999999999999998889999999985443 2111      2331 1   245578889999999999


Q ss_pred             EEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCC--------------------CccccCCHHHHH
Q 002729          792 LFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLG--------------------EEMIVNSMKEYE  850 (887)
Q Consensus       792 ~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~--------------------~~~~~~~~~~y~  850 (887)
                      +++-|+.++| |++.+|||++|+|||+.....+.+-+..      |.+                    +.++..+.++..
T Consensus       212 v~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~------~~ng~lv~~~~~~~~~~~~~~~~G~~v~~~~~~~~  285 (331)
T PHA01630        212 ILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLS------NLDVYWIKSGRKPKLWYTNPIHVGYFLDPDIEDAY  285 (331)
T ss_pred             EEEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccC------CCceEEeeecccccccccCCcccccccCCCHHHHH
Confidence            9999988888 9999999999999998766555443322      211                    213445778888


Q ss_pred             HHHHHHhcC---HHHHHHHHHHHH
Q 002729          851 ERAVSLALD---RQKLQALTNKLK  871 (887)
Q Consensus       851 ~~a~~l~~d---~~~~~~~~~~~~  871 (887)
                      +.++++..|   ++.++.++...+
T Consensus       286 ~~ii~~l~~~~~~~~~~~~~~~~~  309 (331)
T PHA01630        286 QKLLEALANWTPEKKKENLEGRAI  309 (331)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHH
Confidence            888888887   455555555443

>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds

Probab=98.83  E-value=1.2e-07  Score=95.76  Aligned_cols=108  Identities=17%  Similarity=0.144  Sum_probs=83.6

Q ss_pred             EEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHH-hccCCcEE
Q 002729          715 IFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIR-RSSLADLF  793 (887)
Q Consensus       715 ~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~-~~~~~d~~  793 (887)
                      .+|.+ ...|..+.+++++.++.++.|+.+++++|.+.. ...........+. .++|.+.|..+..+... ++..+|++
T Consensus       109 ~~g~~-~~~k~~~~~~~a~~~l~~~~~~~~~~i~G~~~~-~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~di~  185 (229)
T cd01635         109 FVGRL-APEKGLDDLIEAFALLKERGPDLKLVIAGDGPE-REYLEELLAALLL-LDRVIFLGGLDPEELLALLLAAADVF  185 (229)
T ss_pred             EEEee-cccCCHHHHHHHHHHHHHhCCCeEEEEEeCCCC-hHHHHHHHHhcCC-cccEEEeCCCCcHHHHHHHhhcCCEE
Confidence            34443 445999999999999999899999999997665 4344444566676 58999999986555444 45559999


Q ss_pred             ecCCCCCC-chhHHHHHHhCCceeeecccchhh
Q 002729          794 LDTPLCNA-HTTGTDILWAGLPMITLPLEKMAT  825 (887)
Q Consensus       794 ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~  825 (887)
                      +-|...+| |++++|||++|+|||+.....+.+
T Consensus       186 l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~~e  218 (229)
T cd01635         186 VLPSLREGFGLVVLEAMACGLPVIATDVGGPPE  218 (229)
T ss_pred             EecccccCcChHHHHHHhCCCCEEEcCCCCcce
Confidence            99976666 999999999999999877766554

The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.83  E-value=0.00029  Score=73.34  Aligned_cols=426  Identities=14%  Similarity=0.103  Sum_probs=270.0

Q ss_pred             hhHHHHHHHhcC--CHHHHHHHHHHHHhhCCCc---hhHHHHHHHHH-HhcCCHHHHHHHHHHHHhcC---CCc----HH
Q 002729            2 HMALAHQMYKSG--SYKQALEHSNSVYERNPLR---TDNLLLLGAIY-YQLHDYDMCIARNEEALRLE---PRF----AE   68 (887)
Q Consensus         2 ~~~la~~~~~~g--~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~---p~~----~~   68 (887)
                      ++.+|..+-..|  +..+++++++.++...|.+   +.....+|..+ ....+.+.|...++++..+.   |..    .+
T Consensus        10 LlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~   89 (629)
T KOG2300|consen   10 LLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQ   89 (629)
T ss_pred             HHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhH
Confidence            456788888888  9999999999998877643   34556677665 45689999999999997653   332    46


Q ss_pred             HHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CC---CHHHHH
Q 002729           69 CYGNMANAWKEKG-DIDLAIRYYLVAIELRPNFA----DAWSNLASAYMRKGRLNEAAQCCRQALALN-PL---LVDAHS  139 (887)
Q Consensus        69 ~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~---~~~~~~  139 (887)
                      ++..++.+|.... .+..|...+.++++...+.+    ...+.+++.+.-..++..|.+.+.-..+.. +.   .....+
T Consensus        90 a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~f  169 (629)
T KOG2300|consen   90 AASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLF  169 (629)
T ss_pred             HHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHH
Confidence            7788899998877 88999999999999876654    356778889989999999998743322111 11   111222


Q ss_pred             H--HHHHHHHcCChHHHHH---HHHHHHhhCCChH---H----HHHHHH-HHHHHcCCHHHHHHHHHHHHhh----CCC-
Q 002729          140 N--LGNLMKAQGLVQEAYS---CYLEALRIQPTFA---I----AWSNLA-GLFMESGDLNRALQYYKEAVKL----KPT-  201 (887)
Q Consensus       140 ~--la~~~~~~g~~~~A~~---~~~~al~~~p~~~---~----~~~~la-~~~~~~g~~~~A~~~~~~~l~~----~~~-  201 (887)
                      .  .+.++....+..+...   ...++.+....|+   +    .+..+- ..|...|+...+...+++..+.    .+. 
T Consensus       170 tls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~  249 (629)
T KOG2300|consen  170 TLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSS  249 (629)
T ss_pred             HHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCC
Confidence            2  2233333334333333   3344443322221   1    222222 2344557766666655544321    110 


Q ss_pred             -----------CHH-----------HHHHHHHH--HHHcCChHHHHHHHHHHHhhCC-------C--------hhHHhhH
Q 002729          202 -----------FPD-----------AYLNLGNV--YKALGMPQEAIMCYQRAVQTRP-------N--------AIAFGNL  242 (887)
Q Consensus       202 -----------~~~-----------~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~p-------~--------~~~~~~l  242 (887)
                                 .+.           ++..+...  -...|-+++|.++-++++....       .        ...+..+
T Consensus       250 ~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~i  329 (629)
T KOG2300|consen  250 RGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHI  329 (629)
T ss_pred             CCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence                       011           11111111  1134667777777777765311       1        1233345


Q ss_pred             HHHHHHcCChHHHHHHHHHHHh---cCCC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-C--hHHHHh
Q 002729          243 ASTYYERGQADMAILYYKQAIG---CDPR-------FLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS-H--PQALTN  309 (887)
Q Consensus       243 a~~~~~~g~~~~A~~~~~~~l~---~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~--~~~~~~  309 (887)
                      +.+-.-.|++.+|++....+.+   ..|.       .+.....+|......+.++.|...|..+.+.... +  .....+
T Consensus       330 v~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nln  409 (629)
T KOG2300|consen  330 VMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLN  409 (629)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence            5566678999999998888874   3343       2346777888888889999999999999887433 2  234567


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHhccCCC----------chhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCC-C-----HH
Q 002729          310 LGNIYMEWNMLPAAASYYKATLAVTTGL----------SAPFNNLAVIYKQQGNYADAISCYNEVLRIDPL-A-----AD  373 (887)
Q Consensus       310 l~~~~~~~g~~~~A~~~~~~~~~~~~~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~-----~~  373 (887)
                      ++..|.+.++-+.-.+.++.   +.|.+          ..+++..|...+.++++.||...+.+.++.... +     .-
T Consensus       410 lAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~  486 (629)
T KOG2300|consen  410 LAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTAC  486 (629)
T ss_pred             HHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHH
Confidence            88999997776655555444   34442          234566677788999999999999999987521 1     23


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCcHHH---HHHHHHHHHhCCC--HHHHHHHHH
Q 002729          374 GLVNRGNTYKEIGRVTDAIQDYIRAITIR---PTMAEA---HANLASAYKDSGH--VEAAIKSYK  430 (887)
Q Consensus       374 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~---~~~la~~~~~~g~--~~~A~~~~~  430 (887)
                      .+..++.+....|+..++.+...-+++..   |+.+..   ...+-.+|...|+  .+...+.|.
T Consensus       487 ~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~  551 (629)
T KOG2300|consen  487 SLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAFR  551 (629)
T ss_pred             HHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence            66778899999999999999888877653   444332   2334455666665  444444444

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.82  E-value=6.5e-06  Score=83.80  Aligned_cols=222  Identities=28%  Similarity=0.405  Sum_probs=149.0

Q ss_pred             CChHHHHHHHHHHHhhCCC---hhHHhhHHHHHHHcCChHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 002729          217 GMPQEAIMCYQRAVQTRPN---AIAFGNLASTYYERGQADMAILYYKQAIG--CDPRFLEAYNNLGNALKDVGRVDEAIQ  291 (887)
Q Consensus       217 g~~~~A~~~~~~~~~~~p~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~  291 (887)
                      +....+...+.......+.   .......+..+...+++..+...+.....  ..+.....+...+..+...+++.++..
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (291)
T COG0457          37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE  116 (291)
T ss_pred             hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence            3444444444444444433   34555555556666666666666666554  455555566666666666666666666


Q ss_pred             HHHHHHhcCCCChHHHHhHHH-HHHHcCChhHHHHHHHHHHhccC---CCchhHhhHHHHHHHcCCHHHHHHHHHHHHhc
Q 002729          292 CYNQCLSLQPSHPQALTNLGN-IYMEWNMLPAAASYYKATLAVTT---GLSAPFNNLAVIYKQQGNYADAISCYNEVLRI  367 (887)
Q Consensus       292 ~~~~al~~~p~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  367 (887)
                      .+.++....+.+......... ++...|+++.|...+++++...+   .....+...+..+...+++++|+..+.+++..
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  196 (291)
T COG0457         117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL  196 (291)
T ss_pred             HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence            666666655555444444444 66667777777777777665444   23444555555567778888888888888888


Q ss_pred             CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 002729          368 DPL-AADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD  438 (887)
Q Consensus       368 ~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  438 (887)
                      .+. ....+..++..+...+++++|+..+..++...|.....+..++..+...++.+++...+.++++..|.
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         197 NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            877 67788888888888888888888888888888876667777777777777788888888888888876

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.82  E-value=1.2e-07  Score=90.47  Aligned_cols=94  Identities=28%  Similarity=0.314  Sum_probs=51.3

Q ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 002729           32 RTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF---AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLA  108 (887)
Q Consensus        32 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  108 (887)
                      ....++.+|..+...|++++|+..|+++++..|+.   ..++..+|.++...|++++|+..++++++..|++...+..+|
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg  113 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA  113 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            34455556666666666666666666665544432   345555555555555555555555555555555555555555


Q ss_pred             HHHHHcCChHHHHHHHH
Q 002729          109 SAYMRKGRLNEAAQCCR  125 (887)
Q Consensus       109 ~~~~~~g~~~~A~~~~~  125 (887)
                      .++...|+...+...++
T Consensus       114 ~~~~~~g~~~~a~~~~~  130 (172)
T PRK02603        114 VIYHKRGEKAEEAGDQD  130 (172)
T ss_pred             HHHHHcCChHhHhhCHH
Confidence            55555555444443333

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.82  E-value=1.1e-08  Score=84.34  Aligned_cols=82  Identities=23%  Similarity=0.346  Sum_probs=61.4

Q ss_pred             hcCCHHHHHHHHHHHHhhCCC--chhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 002729           11 KSGSYKQALEHSNSVYERNPL--RTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIR   88 (887)
Q Consensus        11 ~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~   88 (887)
                      .+|+|++|+..++++++.+|.  +...++.+|.++++.|++++|+..+++ .+.++.+....+.+|.++.++|++++|++
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            367888888888888887774  455666778888888888888888887 66777777777777888888888888888


Q ss_pred             HHHHH
Q 002729           89 YYLVA   93 (887)
Q Consensus        89 ~~~~a   93 (887)
                      .|+++
T Consensus        80 ~l~~~   84 (84)
T PF12895_consen   80 ALEKA   84 (84)
T ss_dssp             HHHHH
T ss_pred             HHhcC
Confidence            77764

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.82  E-value=1.9e-05  Score=80.34  Aligned_cols=223  Identities=33%  Similarity=0.388  Sum_probs=148.0

Q ss_pred             cCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCChHHHH
Q 002729           46 LHDYDMCIARNEEALRLEPR--FAECYGNMANAWKEKGDIDLAIRYYLVAIE--LRPNFADAWSNLASAYMRKGRLNEAA  121 (887)
Q Consensus        46 ~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~  121 (887)
                      .+.+..+...+.......+.  ........+..+...+++..+...+.....  ..+.....+...+..+...+++.++.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (291)
T COG0457          36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL  115 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence            45666777777777766665  366677777777777777777777777776  56666677777777777777777777


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHH-HHHHcCChHHHHHHHHHHHhhCC---ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002729          122 QCCRQALALNPLLVDAHSNLGN-LMKAQGLVQEAYSCYLEALRIQP---TFAIAWSNLAGLFMESGDLNRALQYYKEAVK  197 (887)
Q Consensus       122 ~~~~~~l~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~  197 (887)
                      ..+.+++...+........... ++...|++++|...+.+++...|   .........+..+...+++++++..+.+++.
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  195 (291)
T COG0457         116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK  195 (291)
T ss_pred             HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence            7777777766665444444444 67777777777777777766554   3444455555556666777777777777777


Q ss_pred             hCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 002729          198 LKPT-FPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPR  268 (887)
Q Consensus       198 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~  268 (887)
                      ..+. ....+..++..+...+++++|...+..++...|. ...+..++..+...+..+++...+.+.+...|.
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            7666 4666666667777666667777776666666665 444445555555555566666666666655554

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.81  E-value=1.2e-07  Score=90.30  Aligned_cols=108  Identities=18%  Similarity=0.193  Sum_probs=86.2

Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHcCC
Q 002729            8 QMYKSGSYKQALEHSNSVYERNPLR--TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR---FAECYGNMANAWKEKGD   82 (887)
Q Consensus         8 ~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~   82 (887)
                      -++-.++|..+...+.++++..+.+  ...++.+|.++...|++++|+..|++++...|+   .+.++..+|.++...|+
T Consensus         8 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~   87 (168)
T CHL00033          8 DNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGE   87 (168)
T ss_pred             ccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCC
Confidence            3455666788888887776655544  667788899999999999999999999887665   34588889999999999


Q ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002729           83 IDLAIRYYLVAIELRPNFADAWSNLASAYMRKG  115 (887)
Q Consensus        83 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  115 (887)
                      +++|+..++++++.+|.....+..++.++...|
T Consensus        88 ~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~  120 (168)
T CHL00033         88 HTKALEYYFQALERNPFLPQALNNMAVICHYRG  120 (168)
T ss_pred             HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence            999999999999888888888888888887433

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.81  E-value=1.1e-06  Score=91.26  Aligned_cols=178  Identities=25%  Similarity=0.364  Sum_probs=86.9

Q ss_pred             CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--C----cHHHHHHHHHHHHHcCChHHHH
Q 002729           48 DYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP--N----FADAWSNLASAYMRKGRLNEAA  121 (887)
Q Consensus        48 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~----~~~~~~~la~~~~~~g~~~~A~  121 (887)
                      ++++|...|+++              |.+|...|++++|...|.++.+..-  +    -...+...+.+|.+. ++++|+
T Consensus        30 ~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai   94 (282)
T PF14938_consen   30 DYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAI   94 (282)
T ss_dssp             HHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHH
T ss_pred             CHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHH
Confidence            566666555554              4455556666666666655543210  0    112233334444333 666666


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCC
Q 002729          122 QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMES-GDLNRALQYYKEAVKLKP  200 (887)
Q Consensus       122 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~~  200 (887)
                      .++++++.              +|...|++..|...              +..+|.+|... |++++|++.|+++.+...
T Consensus        95 ~~~~~A~~--------------~y~~~G~~~~aA~~--------------~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~  146 (282)
T PF14938_consen   95 ECYEKAIE--------------IYREAGRFSQAAKC--------------LKELAEIYEEQLGDYEKAIEYYQKAAELYE  146 (282)
T ss_dssp             HHHHHHHH--------------HHHHCT-HHHHHHH--------------HHHHHHHHCCTT--HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH--------------HHHhcCcHHHHHHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            66666543              33344444443322              33345555555 566666666666655421


Q ss_pred             CC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--------hhHHhhHHHHHHHcCChHHHHHHHHHHHhcC
Q 002729          201 TF------PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN--------AIAFGNLASTYYERGQADMAILYYKQAIGCD  266 (887)
Q Consensus       201 ~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~  266 (887)
                      ..      ...+..++.++...|+|++|++.|++.....-+        ...+...+.+++..|+...|...+++....+
T Consensus       147 ~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~  226 (282)
T PF14938_consen  147 QEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQD  226 (282)
T ss_dssp             HTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTS
T ss_pred             HCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            11      124455666666666666666666666553211        1223444555556666666666666666555


Q ss_pred             CC
Q 002729          267 PR  268 (887)
Q Consensus       267 p~  268 (887)
                      |.
T Consensus       227 ~~  228 (282)
T PF14938_consen  227 PS  228 (282)
T ss_dssp             TT
T ss_pred             CC
Confidence            53

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.81  E-value=5.2e-08  Score=82.80  Aligned_cols=95  Identities=34%  Similarity=0.523  Sum_probs=50.7

Q ss_pred             hHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002729            3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD   82 (887)
Q Consensus         3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~   82 (887)
                      +.+|..++..|++++|+..++++++..|.+..++..+|.++...+++++|++.++++++..|.+...+..++.++...|+
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (100)
T cd00189           4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK   83 (100)
T ss_pred             HHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence            44555555555555555555555555555545555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHhcC
Q 002729           83 IDLAIRYYLVAIELR   97 (887)
Q Consensus        83 ~~~A~~~~~~al~~~   97 (887)
                      +++|...+.++++..
T Consensus        84 ~~~a~~~~~~~~~~~   98 (100)
T cd00189          84 YEEALEAYEKALELD   98 (100)
T ss_pred             HHHHHHHHHHHHccC
Confidence            555555555554443

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=6.1e-08  Score=98.91  Aligned_cols=95  Identities=27%  Similarity=0.396  Sum_probs=55.3

Q ss_pred             HhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCC
Q 002729          341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG  420 (887)
Q Consensus       341 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  420 (887)
                      +++++.++.+++++.+|+...+++|+++|+|..+++..|.++..+|+++.|+..|++++++.|+|..+...|..+-.+..
T Consensus       260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~  339 (397)
T KOG0543|consen  260 HLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIR  339 (397)
T ss_pred             hhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence            45556666666666666666666666666666666666666666666666666666666666666555555555555544


Q ss_pred             CHHH-HHHHHHHHHHc
Q 002729          421 HVEA-AIKSYKQALLL  435 (887)
Q Consensus       421 ~~~~-A~~~~~~al~~  435 (887)
                      ++.+ ..+.|.+++..
T Consensus       340 ~~~~kekk~y~~mF~k  355 (397)
T KOG0543|consen  340 EYEEKEKKMYANMFAK  355 (397)
T ss_pred             HHHHHHHHHHHHHhhc
Confidence            4333 25555555544

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.80  E-value=4.3e-07  Score=83.73  Aligned_cols=102  Identities=20%  Similarity=0.213  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 002729           68 ECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKA  147 (887)
Q Consensus        68 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~  147 (887)
                      ..++..|..|-..|-+.-|.-.|.+++.+.|+-+++++.+|..+...|+++.|.+.|...++++|...-+..+.|..++-
T Consensus        66 ~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY  145 (297)
T COG4785          66 QLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY  145 (297)
T ss_pred             HHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeee
Confidence            34445555555555555555555555555665555555565555555666666666666666665555555555555555


Q ss_pred             cCChHHHHHHHHHHHhhCCChH
Q 002729          148 QGLVQEAYSCYLEALRIQPTFA  169 (887)
Q Consensus       148 ~g~~~~A~~~~~~al~~~p~~~  169 (887)
                      -|+++-|.+.+.+..+.+|+++
T Consensus       146 ~gR~~LAq~d~~~fYQ~D~~DP  167 (297)
T COG4785         146 GGRYKLAQDDLLAFYQDDPNDP  167 (297)
T ss_pred             cCchHhhHHHHHHHHhcCCCCh
Confidence            5566655555555555555554

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.80  E-value=1.3e-07  Score=90.13  Aligned_cols=102  Identities=26%  Similarity=0.366  Sum_probs=62.0

Q ss_pred             hhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 002729          339 APFNNLAVIYKQQGNYADAISCYNEVLRIDPLA---ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASA  415 (887)
Q Consensus       339 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  415 (887)
                      ..+..+|.++..+|++++|+..|++++.+.|+.   +.++.++|.++...|++++|++.+++++++.|.....+..++.+
T Consensus        36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i  115 (168)
T CHL00033         36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVI  115 (168)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence            334555666666666666666666666554432   23566666666666666666666666666666666655555555


Q ss_pred             HH-------hCCCHH-------HHHHHHHHHHHcCCCCh
Q 002729          416 YK-------DSGHVE-------AAIKSYKQALLLRPDFP  440 (887)
Q Consensus       416 ~~-------~~g~~~-------~A~~~~~~al~~~p~~~  440 (887)
                      +.       ..|+++       +|..+|++++..+|++.
T Consensus       116 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033        116 CHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            55       555554       66666777777777654

>TIGR00215 lpxB lipid-A-disaccharide synthase

Probab=98.79  E-value=3.7e-08  Score=107.10  Aligned_cols=163  Identities=13%  Similarity=0.052  Sum_probs=112.3

Q ss_pred             CCCCCCCCCCcEEEEec--CCC---CCCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCC
Q 002729          703 KRSDYGLPEDKFIFACF--NQL---YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDV  777 (887)
Q Consensus       703 ~r~~~~l~~~~~~~~~~--~~~---~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~  777 (887)
                      .|+.+|++++.++++.+  ++.   .|+.+.++++...+.+..|+.++++.+.+......+.+.....|. ..+|.+.+.
T Consensus       181 ~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~  259 (385)
T TIGR00215       181 AREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFKRRLQFEQIKAEYGP-DLQLHLIDG  259 (385)
T ss_pred             HHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCchhHHHHHHHHHHhCC-CCcEEEECc
Confidence            56778998776655433  243   368899999988888888998887655443335566666666776 457766643


Q ss_pred             CCcHHHHHhccCCcEEecCCCCCCchhHHHHHHhCCceeeecccchhhhhHHHH------------HHhcC-CCCcccc-
Q 002729          778 AMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSL------------CLATG-LGEEMIV-  843 (887)
Q Consensus       778 ~~~~~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~~~r~~~~~------------l~~~g-~~~~~~~-  843 (887)
                          +....|..+|+++-++    |++|+|++++|+|+|....-..-+...+..            +..-| .+| ++- 
T Consensus       260 ----~~~~~l~aADl~V~~S----Gt~tlEa~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~~~~pe-l~q~  330 (385)
T TIGR00215       260 ----DARKAMFAADAALLAS----GTAALEAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANRLLVPE-LLQE  330 (385)
T ss_pred             ----hHHHHHHhCCEEeecC----CHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCCccchh-hcCC
Confidence                2235789999999665    777889999999988874333333332222            22222 233 553 


Q ss_pred             -CCHHHHHHHHHHHhcCH----HHHHHHHHHHHhhcc
Q 002729          844 -NSMKEYEERAVSLALDR----QKLQALTNKLKSVRL  875 (887)
Q Consensus       844 -~~~~~y~~~a~~l~~d~----~~~~~~~~~~~~~~~  875 (887)
                       .+++...+.+.+|..|+    +.++.+++.+++.+.
T Consensus       331 ~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~  367 (385)
T TIGR00215       331 ECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELRQ  367 (385)
T ss_pred             CCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHH
Confidence             46888999999999999    999999998887653

Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.79  E-value=2.3e-07  Score=85.43  Aligned_cols=195  Identities=19%  Similarity=0.186  Sum_probs=141.0

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHH
Q 002729          101 ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFM  180 (887)
Q Consensus       101 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  180 (887)
                      +..++..|..|-..|-+.-|.--|.+++.+.|+.+++++.+|..+...|+++.|.+.|+..++++|.+..+..+.|..++
T Consensus        65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y  144 (297)
T COG4785          65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY  144 (297)
T ss_pred             HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence            44666778888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHH-HHHhhCCChhHHhhHHHHHHHcCChHHHHHHH
Q 002729          181 ESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQ-RAVQTRPNAIAFGNLASTYYERGQADMAILYY  259 (887)
Q Consensus       181 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~~  259 (887)
                      --|++.-|.+-+.+..+.+|++|.--..+- +-...-++.+|...+. ++...+.+...|.. ...|...=..+   ..+
T Consensus       145 Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLY-l~E~k~dP~~A~tnL~qR~~~~d~e~WG~~i-V~~yLgkiS~e---~l~  219 (297)
T COG4785         145 YGGRYKLAQDDLLAFYQDDPNDPFRSLWLY-LNEQKLDPKQAKTNLKQRAEKSDKEQWGWNI-VEFYLGKISEE---TLM  219 (297)
T ss_pred             ecCchHhhHHHHHHHHhcCCCChHHHHHHH-HHHhhCCHHHHHHHHHHHHHhccHhhhhHHH-HHHHHhhccHH---HHH
Confidence            999999999999999999999875322221 1123345666665544 34333323222222 22222111111   223


Q ss_pred             HHHHhcCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002729          260 KQAIGCDPRF-------LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ  300 (887)
Q Consensus       260 ~~~l~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  300 (887)
                      +++.....++       .++++.+|..+...|+.++|...|+-++..+
T Consensus       220 ~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann  267 (297)
T COG4785         220 ERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN  267 (297)
T ss_pred             HHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence            3333222222       3578888888999999999999988887654

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=9.8e-08  Score=97.42  Aligned_cols=109  Identities=22%  Similarity=0.289  Sum_probs=55.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCC----Cc-----------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q 002729            5 LAHQMYKSGSYKQALEHSNSVYERNP----LR-----------TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAEC   69 (887)
Q Consensus         5 la~~~~~~g~~~~A~~~~~~~l~~~p----~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~   69 (887)
                      .|+.+++.|+|..|...|++++..-.    .+           ..++++++.|+.++++|.+|+..+++++..+|+|..+
T Consensus       214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KA  293 (397)
T KOG0543|consen  214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKA  293 (397)
T ss_pred             hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhH
Confidence            45667777777777777777654221    00           1233444445555555555555555555555555555


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 002729           70 YGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMR  113 (887)
Q Consensus        70 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  113 (887)
                      ++..|.++...|+|+.|+..|+++++..|+|..+...+..+..+
T Consensus       294 LyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k  337 (397)
T KOG0543|consen  294 LYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK  337 (397)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            55555555555555555555555555555444444444444433

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.79  E-value=2.1e-07  Score=88.89  Aligned_cols=118  Identities=25%  Similarity=0.292  Sum_probs=94.7

Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 002729           65 RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF---ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNL  141 (887)
Q Consensus        65 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l  141 (887)
                      .....++.+|..+...|++++|+.+|+++++..|+.   ..++..+|.++...|++++|+..++++++..|.+...+..+
T Consensus        33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  112 (172)
T PRK02603         33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI  112 (172)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            456778899999999999999999999998876653   46888899999999999999999999999888888888888


Q ss_pred             HHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002729          142 GNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF  202 (887)
Q Consensus       142 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~  202 (887)
                      |.++...|+...+...+++++.                    .+++|++.+++++..+|++
T Consensus       113 g~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        113 AVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence            8888888887776665555432                    2567777777777777665

>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]

Probab=98.79  E-value=4.7e-08  Score=107.65  Aligned_cols=162  Identities=17%  Similarity=0.185  Sum_probs=113.2

Q ss_pred             CcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCc----eEEEecCCh----hhHHHHHHHHHHc--------CC-CCCcE
Q 002729          712 DKFIFACFNQL--YKMDPEIFNTWCNILRRVPNS----ALWLLRFPA----AGEMRLRAYAVAQ--------GV-QPDQI  772 (887)
Q Consensus       712 ~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~----~l~~~~~~~----~~~~~l~~~~~~~--------g~-~~~r~  772 (887)
                      +..++++..|+  .|..+..++++.+++++.|+.    +|++++.+.    .....+++.+++.        |- +-.-|
T Consensus       258 ~~~vIl~VgRLd~~KGi~~ll~A~~~ll~~~p~~~~~v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv  337 (456)
T TIGR02400       258 GRKLIIGVDRLDYSKGLPERLLAFERFLEEHPEWRGKVVLVQIAVPSRGDVPEYQQLRRQVEELVGRINGRFGTLDWTPI  337 (456)
T ss_pred             CCeEEEEccccccccCHHHHHHHHHHHHHhCccccCceEEEEEecCCccCchHHHHHHHHHHHHHHHHHhccCCCCCccE
Confidence            56788888887  499999999999999999974    466665321    1134565555543        21 11114


Q ss_pred             EE-cCCCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCc----eeeecccchhhhhHHHHHHhcCCCCcccc--C
Q 002729          773 IF-TDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLP----MITLPLEKMATRVAGSLCLATGLGEEMIV--N  844 (887)
Q Consensus       773 ~~-~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvP----vvt~~g~~~~~r~~~~~l~~~g~~~~~~~--~  844 (887)
                      ++ .+.++.++..++|+.+||+|-|+-..| |++++|||+||+|    ||.-.....+.     .+   + +. +++  .
T Consensus       338 ~~l~~~~~~~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~-----~l---~-~g-llVnP~  407 (456)
T TIGR02400       338 RYLNRSYDREELMALYRAADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQ-----EL---N-GA-LLVNPY  407 (456)
T ss_pred             EEEcCCCCHHHHHHHHHhCcEEEECccccccCccHHHHHHhcCCCCceEEEeCCCCChH-----Hh---C-Cc-EEECCC
Confidence            44 557788999999999999999988899 9999999999999    66432211111     12   2 33 443  6


Q ss_pred             CHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcccCCCCCcCCcc
Q 002729          845 SMKEYEERAVSLAL-DRQKLQALTNKLKSVRLTCPLFDTARWV  886 (887)
Q Consensus       845 ~~~~y~~~a~~l~~-d~~~~~~~~~~~~~~~~~~~l~d~~~~~  886 (887)
                      |.++..+...++.+ +++.+++..++++++...   +|..+|+
T Consensus       408 d~~~lA~aI~~aL~~~~~er~~r~~~~~~~v~~---~~~~~W~  447 (456)
T TIGR02400       408 DIDGMADAIARALTMPLEEREERHRAMMDKLRK---NDVQRWR  447 (456)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh---CCHHHHH
Confidence            88888887777776 678888888888887543   5655553

This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.77  E-value=3e-08  Score=78.27  Aligned_cols=67  Identities=36%  Similarity=0.561  Sum_probs=39.8

Q ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 002729           32 RTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG-DIDLAIRYYLVAIELRP   98 (887)
Q Consensus        32 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p   98 (887)
                      ++..|..+|.+++..|++++|+..|+++++.+|+++.+++.+|.++...| ++++|++.++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            34555556666666666666666666666666666666666666666665 45666666666655554

...

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.77  E-value=2.6e-08  Score=77.48  Aligned_cols=63  Identities=35%  Similarity=0.593  Sum_probs=41.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 002729            4 ALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF   66 (887)
Q Consensus         4 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~   66 (887)
                      .+|..+++.|+|++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            456666666666666666666666666666666666666666666666666666666666654

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.77  E-value=3.8e-07  Score=84.20  Aligned_cols=123  Identities=23%  Similarity=0.182  Sum_probs=75.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHH
Q 002729            4 ALAHQMYKSGSYKQALEHSNSVYERNPLR---TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF---AECYGNMANAW   77 (887)
Q Consensus         4 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~   77 (887)
                      ..+...+..++..++...++++.+.+|++   ..+.+.+|.+++..|++++|+..|++++...|+.   ..+.+.++.++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~   95 (145)
T PF09976_consen   16 EQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARIL   95 (145)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence            33444455666666666666666666655   4455666666666666666666666666655443   34566666666


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002729           78 KEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQA  127 (887)
Q Consensus        78 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~  127 (887)
                      ...|++++|+..++.. ...+..+.++..+|.++...|++++|+..|+++
T Consensus        96 ~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen   96 LQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            6666666666666552 223334556666666666666666666666655

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.76  E-value=4.9e-07  Score=93.84  Aligned_cols=126  Identities=21%  Similarity=0.253  Sum_probs=68.9

Q ss_pred             HHHHHHHc-CChhHHHHHHHHHHhccCCC------chhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------HHHH
Q 002729          310 LGNIYMEW-NMLPAAASYYKATLAVTTGL------SAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA-------ADGL  375 (887)
Q Consensus       310 l~~~~~~~-g~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~  375 (887)
                      +|.+|... |++++|+++|+++.+.....      ...+..++.++.+.|+|++|++.|++.....-++       ...+
T Consensus       120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~  199 (282)
T PF14938_consen  120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF  199 (282)
T ss_dssp             HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence            44444444 55555555555555442111      2234556777777777777777777776542111       1244


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-----HHHHHHHHHHHHhC--CCHHHHHHHHHHHHHc
Q 002729          376 VNRGNTYKEIGRVTDAIQDYIRAITIRPTM-----AEAHANLASAYKDS--GHVEAAIKSYKQALLL  435 (887)
Q Consensus       376 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~--g~~~~A~~~~~~al~~  435 (887)
                      +..+.|+...|+...|.+.+++....+|..     ......|..++...  ..+++|+.-|.++..+
T Consensus       200 l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~l  266 (282)
T PF14938_consen  200 LKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRL  266 (282)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS--
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCcc
Confidence            556667777777777777777777776642     33455555555543  3566666666655444

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.75  E-value=4.2e-08  Score=76.34  Aligned_cols=64  Identities=27%  Similarity=0.376  Sum_probs=44.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCh
Q 002729          377 NRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFP  440 (887)
Q Consensus       377 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  440 (887)
                      .+|..+.+.|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|++|
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            4566677777777777777777777777777777777777777777777777777777777654

>PRK11906 transcriptional regulator; Provisional

Probab=98.75  E-value=9.3e-07  Score=92.85  Aligned_cols=132  Identities=11%  Similarity=0.033  Sum_probs=65.8

Q ss_pred             HHHHHHHHhcCC---HHHHHHHHHHHH---hcCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCcH
Q 002729           37 LLLGAIYYQLHD---YDMCIARNEEAL---RLEPRFAECYGNMANAWKEK---------GDIDLAIRYYLVAIELRPNFA  101 (887)
Q Consensus        37 ~~la~~~~~~g~---~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~  101 (887)
                      +..|...+..+.   .+.|+.+|.+++   ..+|..+.+|..++.|+...         .+..+|.+..+++++++|.++
T Consensus       259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da  338 (458)
T PRK11906        259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG  338 (458)
T ss_pred             HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence            444444433332   244555555555   55555555555555555432         122344444455555555555


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh
Q 002729          102 DAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF  168 (887)
Q Consensus       102 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  168 (887)
                      .+...+|.++...++++.|...|++++.++|+...+++..|.+....|+.++|.+.++++++++|.-
T Consensus       339 ~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~  405 (458)
T PRK11906        339 KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR  405 (458)
T ss_pred             HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence            5555555555555555555555555555555555555555555555555555555555555555443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.74  E-value=3.1e-08  Score=81.61  Aligned_cols=81  Identities=32%  Similarity=0.513  Sum_probs=59.0

Q ss_pred             cCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHH
Q 002729          351 QGNYADAISCYNEVLRIDPL--AADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKS  428 (887)
Q Consensus       351 ~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  428 (887)
                      +|++++|+.+++++++..|.  +...++.+|.++.+.|++++|+..+++ .+.++.+....+.+|.++.++|++++|++.
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            56777777777777777774  345666678888888888888888777 667777777777778888888888888877


Q ss_pred             HHHH
Q 002729          429 YKQA  432 (887)
Q Consensus       429 ~~~a  432 (887)
                      |+++
T Consensus        81 l~~~   84 (84)
T PF12895_consen   81 LEKA   84 (84)
T ss_dssp             HHHH
T ss_pred             HhcC
Confidence            7764

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.73  E-value=2.7e-07  Score=93.11  Aligned_cols=106  Identities=17%  Similarity=0.103  Sum_probs=75.7

Q ss_pred             chhHHHHHHHHH-HhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---cHHHH
Q 002729           32 RTDNLLLLGAIY-YQLHDYDMCIARNEEALRLEPRF---AECYGNMANAWKEKGDIDLAIRYYLVAIELRPN---FADAW  104 (887)
Q Consensus        32 ~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~  104 (887)
                      +....+..+..+ +..|+|++|+..|++.++..|++   +.+++.+|.+|+..|++++|+..|+++++..|+   .++++
T Consensus       141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl  220 (263)
T PRK10803        141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM  220 (263)
T ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence            345556666655 45677777777777777777776   467777777777777777777777777776665   46677


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHH
Q 002729          105 SNLASAYMRKGRLNEAAQCCRQALALNPLLVDA  137 (887)
Q Consensus       105 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~  137 (887)
                      +.+|.++...|++++|...|+++++..|+...+
T Consensus       221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a  253 (263)
T PRK10803        221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA  253 (263)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence            777777777777777777777777777776543

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.71  E-value=4.4e-07  Score=100.98  Aligned_cols=121  Identities=16%  Similarity=0.106  Sum_probs=92.8

Q ss_pred             hhHHHHHHHHHHhccCCCchhHhhHHHHHHHc--------CCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHH
Q 002729          320 LPAAASYYKATLAVTTGLSAPFNNLAVIYKQQ--------GNYADAISCYNEVLRI--DPLAADGLVNRGNTYKEIGRVT  389 (887)
Q Consensus       320 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~  389 (887)
                      ..+|+.+|+++++.+|+++.++-.++.++...        .+..++.+..++++.+  +|.++.++..+|..+...|+++
T Consensus       358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~  437 (517)
T PRK10153        358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTD  437 (517)
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHH
Confidence            44555555555555555555555444444322        2345666666676664  6777888999999999999999


Q ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChH
Q 002729          390 DAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE  441 (887)
Q Consensus       390 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  441 (887)
                      +|...+++++.++|+ ..+|..+|.++...|+.++|.+.|++++.++|.++.
T Consensus       438 ~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        438 EAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             HHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            999999999999995 789999999999999999999999999999999884

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.71  E-value=7.3e-07  Score=99.26  Aligned_cols=121  Identities=20%  Similarity=0.196  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc--------CChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChH
Q 002729           83 IDLAIRYYLVAIELRPNFADAWSNLASAYMRK--------GRLNEAAQCCRQALAL--NPLLVDAHSNLGNLMKAQGLVQ  152 (887)
Q Consensus        83 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~  152 (887)
                      ..+|+.+|+++++.+|++..++..++.++...        .+..++.+..++++..  ++.++.++..+|..+...|+++
T Consensus       358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~  437 (517)
T PRK10153        358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTD  437 (517)
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHH
Confidence            44555555555555555555555444444322        1233444444454443  4555566666666666667777


Q ss_pred             HHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 002729          153 EAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD  204 (887)
Q Consensus       153 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~  204 (887)
                      +|...+++++.++| +..+|..+|.++...|+.++|++.|++++.++|.++.
T Consensus       438 ~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        438 EAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             HHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            77777777777666 3566666677777777777777777777776666654

>PRK11906 transcriptional regulator; Provisional

Probab=98.71  E-value=7.4e-07  Score=93.60  Aligned_cols=149  Identities=14%  Similarity=0.099  Sum_probs=128.5

Q ss_pred             CHHHHHHHHHHHH---hhCCCchhHHHHHHHHHHhc---------CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002729           14 SYKQALEHSNSVY---ERNPLRTDNLLLLGAIYYQL---------HDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG   81 (887)
Q Consensus        14 ~~~~A~~~~~~~l---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g   81 (887)
                      ..+.|+.+|.+++   ..+|....++-.++.|++..         .+..+|.+..+++++.+|.++.++..+|.+....+
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~  352 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG  352 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence            3568899999999   88899999999999998765         24578999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCChHHHHHHHHH
Q 002729           82 DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNL-MKAQGLVQEAYSCYLE  160 (887)
Q Consensus        82 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~  160 (887)
                      +++.|...|++++.++|+.+.+|+..|....-.|+.++|.+.++++++++|....+-...-.+ .+-....++|+..|-+
T Consensus       353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (458)
T PRK11906        353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYK  432 (458)
T ss_pred             chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhh
Confidence            999999999999999999999999999999999999999999999999999876654433333 3445567777777765


Q ss_pred             HH
Q 002729          161 AL  162 (887)
Q Consensus       161 al  162 (887)
                      -.
T Consensus       433 ~~  434 (458)
T PRK11906        433 ET  434 (458)
T ss_pred             cc
Confidence            43

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.70  E-value=1.5e-08  Score=99.32  Aligned_cols=226  Identities=15%  Similarity=0.098  Sum_probs=142.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002729           36 LLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKG  115 (887)
Q Consensus        36 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  115 (887)
                      +-..|+.|+++|.|++|+.+|.+.+..+|.++..+.+.+.+|++.+.+..|...+..++.++.....+|...+.+-..+|
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            45567777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHH---------HHHHHHHHHHcCCHH
Q 002729          116 RLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA---------WSNLAGLFMESGDLN  186 (887)
Q Consensus       116 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---------~~~la~~~~~~g~~~  186 (887)
                      +..+|.+-++.++++.|++.+....++.+..    ..++.- .   .+..|....+         .-.-|..+...|.++
T Consensus       180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S----l~E~~I-~---~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~  251 (536)
T KOG4648|consen  180 NNMEAKKDCETVLALEPKNIELKKSLARINS----LRERKI-A---TKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRS  251 (536)
T ss_pred             hHHHHHHhHHHHHhhCcccHHHHHHHHHhcc----hHhhhH-H---hhcCCCCCccccchhhhccccCcchhhhhhhccc
Confidence            7777777777777777776655444433322    211111 0   0111111111         112244566667777


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHhhHHHHHHHcCChHHHHHHHHHHHhc
Q 002729          187 RALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGC  265 (887)
Q Consensus       187 ~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  265 (887)
                      .++..+..-+.....+...-.+ +..+.+..++++++.-..+.....|. ......-+.+---.|...++...++.++..
T Consensus       252 ~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~  330 (536)
T KOG4648|consen  252 VPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKV  330 (536)
T ss_pred             cceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeee
Confidence            7777776655544333333333 55666677777777777776665554 333333344444456677777778888877


Q ss_pred             CCCcH
Q 002729          266 DPRFL  270 (887)
Q Consensus       266 ~p~~~  270 (887)
                      .|.+.
T Consensus       331 ~P~~~  335 (536)
T KOG4648|consen  331 APAVE  335 (536)
T ss_pred             ccccc
Confidence            77654

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=98.70  E-value=0.001  Score=72.02  Aligned_cols=398  Identities=11%  Similarity=0.046  Sum_probs=251.4

Q ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-HcCChHHHHHHHHHH
Q 002729           49 YDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM-RKGRLNEAAQCCRQA  127 (887)
Q Consensus        49 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~~  127 (887)
                      .+.+...|...+...|..-..|...|..-.+.|..+++.++|++.+..-|-....|..+..... ..|+.+.-...|+++
T Consensus        61 ~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A  140 (577)
T KOG1258|consen   61 VDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERA  140 (577)
T ss_pred             HHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence            3666677777777788877888888888888888888888888888888877777766554443 346677777777777


Q ss_pred             HHhCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhh
Q 002729          128 LALNPL---LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMES------GDLNRALQYYKEAVKL  198 (887)
Q Consensus       128 l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------g~~~~A~~~~~~~l~~  198 (887)
                      ......   ....|-........++++..-..+|++.++..-.....++..-.-+.+.      ...+++.+.-......
T Consensus       141 ~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~  220 (577)
T KOG1258|consen  141 KSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAER  220 (577)
T ss_pred             HHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhh
Confidence            765433   2335555555566777788888888887765333222222211111111      1112222111111100


Q ss_pred             --CCCC---HHHH-HHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHhhHHHHHHHcCChHHHHHHHHHHHh--------
Q 002729          199 --KPTF---PDAY-LNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIG--------  264 (887)
Q Consensus       199 --~~~~---~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--------  264 (887)
                        .+..   .+.+ ...-.+-...+..+++...+.+...         ..-.++.......+.+..++..++        
T Consensus       221 ~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~---------~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkp  291 (577)
T KOG1258|consen  221 SKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVS---------IHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKP  291 (577)
T ss_pred             hhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHH---------HHHHHHHhhHhHHHHHHhhhhhccccccccCc
Confidence              0000   0000 0000000001111112211111111         111222233334444444554442        


Q ss_pred             cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcc-CCCchhHhh
Q 002729          265 CDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT-TGLSAPFNN  343 (887)
Q Consensus       265 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~  343 (887)
                      .++.....|..........|+++...-.+++++--.....+.|...+......|+.+-|...+..+.+.. +..+.+...
T Consensus       292 l~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~  371 (577)
T KOG1258|consen  292 LDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLL  371 (577)
T ss_pred             ccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHH
Confidence            2333456788888888899999999999999998888888999999999999999999998888887775 556666777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH---HHHHHHhcCCC---cHHHHHHHHHHHH
Q 002729          344 LAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQ---DYIRAITIRPT---MAEAHANLASAYK  417 (887)
Q Consensus       344 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~---~~~~al~~~p~---~~~~~~~la~~~~  417 (887)
                      -+..-..+|++..|...++...+..|....+-........+.|+.+.+..   .+....+-..+   ....+...+....
T Consensus       372 ~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~  451 (577)
T KOG1258|consen  372 EARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY  451 (577)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence            77777788999999999999998888888888888888888999988884   33333222111   1334445555444


Q ss_pred             h-CCCHHHHHHHHHHHHHcCCCChHHHHHHHHHhhhcCC
Q 002729          418 D-SGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCS  455 (887)
Q Consensus       418 ~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  455 (887)
                      + .++.+.|...+.++.+..|++...+..++......+.
T Consensus       452 ~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~  490 (577)
T KOG1258|consen  452 KIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS  490 (577)
T ss_pred             HHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence            4 6789999999999999999999998888887766553

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.69  E-value=3.9e-07  Score=88.94  Aligned_cols=101  Identities=20%  Similarity=0.252  Sum_probs=61.5

Q ss_pred             hHHHHHHHhcCCHHHHHHHHHHHHhhCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHH
Q 002729            3 MALAHQMYKSGSYKQALEHSNSVYERNPLR---TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF---AECYGNMANA   76 (887)
Q Consensus         3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~   76 (887)
                      |..|..+++.|+|.+|...|...++..|++   +.++++||.+++.+|+|++|...|..+.+..|++   +++++.+|.+
T Consensus       145 Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~  224 (262)
T COG1729         145 YNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVS  224 (262)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHH
Confidence            455566666666666666666666666543   4566666666666666666666666666655543   4556666666


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 002729           77 WKEKGDIDLAIRYYLVAIELRPNFADA  103 (887)
Q Consensus        77 ~~~~g~~~~A~~~~~~al~~~p~~~~~  103 (887)
                      ...+|+.++|...|+++++..|+...+
T Consensus       225 ~~~l~~~d~A~atl~qv~k~YP~t~aA  251 (262)
T COG1729         225 LGRLGNTDEACATLQQVIKRYPGTDAA  251 (262)
T ss_pred             HHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence            666666666666666666666654443

>PRK15331 chaperone protein SicA; Provisional

Probab=98.67  E-value=2.7e-07  Score=83.02  Aligned_cols=104  Identities=12%  Similarity=0.003  Sum_probs=88.9

Q ss_pred             CCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 002729          335 TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLAS  414 (887)
Q Consensus       335 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  414 (887)
                      ++.-+..+..|.-+.+.|++++|..+|+-....+|.+++.+..+|.++..+|++++|+..|..+..++++++...+..|.
T Consensus        34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq  113 (165)
T PRK15331         34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQ  113 (165)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence            33445566778888889999999999998888899999999999999999999999999999999998888888999999


Q ss_pred             HHHhCCCHHHHHHHHHHHHHcCCCC
Q 002729          415 AYKDSGHVEAAIKSYKQALLLRPDF  439 (887)
Q Consensus       415 ~~~~~g~~~~A~~~~~~al~~~p~~  439 (887)
                      ||..+|+.++|+..|+.+++ .|.+
T Consensus       114 C~l~l~~~~~A~~~f~~a~~-~~~~  137 (165)
T PRK15331        114 CQLLMRKAAKARQCFELVNE-RTED  137 (165)
T ss_pred             HHHHhCCHHHHHHHHHHHHh-Ccch
Confidence            99999999999999998888 3443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.66  E-value=4.8e-07  Score=91.28  Aligned_cols=104  Identities=19%  Similarity=0.230  Sum_probs=88.4

Q ss_pred             hhHhhHHHHH-HHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---cHHHHHH
Q 002729          339 APFNNLAVIY-KQQGNYADAISCYNEVLRIDPLA---ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT---MAEAHAN  411 (887)
Q Consensus       339 ~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~  411 (887)
                      ..++..+..+ .+.|++++|+..|++.++..|++   +.+++.+|.+|...|++++|+..|+++++..|+   .+++++.
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            4445555554 56789999999999999999887   579999999999999999999999999988776   4778899


Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHHcCCCChHH
Q 002729          412 LASAYKDSGHVEAAIKSYKQALLLRPDFPEA  442 (887)
Q Consensus       412 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  442 (887)
                      +|.++...|+.++|++.|+++++..|+...+
T Consensus       223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a  253 (263)
T PRK10803        223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA  253 (263)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence            9999999999999999999999999987654

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.65  E-value=6e-07  Score=95.18  Aligned_cols=117  Identities=17%  Similarity=0.134  Sum_probs=73.4

Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHH
Q 002729           42 IYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA  121 (887)
Q Consensus        42 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  121 (887)
                      .+...++++.|+..+++..+.+|+   +...++.++...++-.+|++.+.++++..|.+...+...+..+.+.++++.|+
T Consensus       178 ~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL  254 (395)
T PF09295_consen  178 YLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELAL  254 (395)
T ss_pred             HHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence            334445666666666666655543   34456666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002729          122 QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEA  161 (887)
Q Consensus       122 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  161 (887)
                      ++.+++.+..|++...|..|+.+|...|++++|+..++.+
T Consensus       255 ~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  255 EIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            6666666666666666666666666666666666555543

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=98.64  E-value=0.0006  Score=70.34  Aligned_cols=389  Identities=13%  Similarity=0.068  Sum_probs=197.2

Q ss_pred             HHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 002729           21 HSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF  100 (887)
Q Consensus        21 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  100 (887)
                      -++.-++.+|.+...|+.+..-+..++.+++-.+.++++..-.|-.+.+|......-...+++......|.+++...-+ 
T Consensus        30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~-  108 (660)
T COG5107          30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN-  108 (660)
T ss_pred             HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-
Confidence            3455567788888888888888888888888888888888888877777777666666777888888888888765433 


Q ss_pred             HHHHHHHHHHHHHcCC---------hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---------cCChHHHHHHHHHHH
Q 002729          101 ADAWSNLASAYMRKGR---------LNEAAQCCRQALALNPLLVDAHSNLGNLMKA---------QGLVQEAYSCYLEAL  162 (887)
Q Consensus       101 ~~~~~~la~~~~~~g~---------~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~---------~g~~~~A~~~~~~al  162 (887)
                      .+.|......-.+.++         .-+|.+..-...-.+|.....|...+..+..         +.+.+.-...|.+++
T Consensus       109 ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral  188 (660)
T COG5107         109 LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRAL  188 (660)
T ss_pred             HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH
Confidence            5555544433333221         1122222222222345555666666555432         233444455566665


Q ss_pred             hhCCChH-HHHHHHHHHHHH-------------cCCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHcCChHH
Q 002729          163 RIQPTFA-IAWSNLAGLFME-------------SGDLNRALQYYKEAVKLK-------PTFPDAYLNLGNVYKALGMPQE  221 (887)
Q Consensus       163 ~~~p~~~-~~~~~la~~~~~-------------~g~~~~A~~~~~~~l~~~-------~~~~~~~~~l~~~~~~~g~~~~  221 (887)
                      ...-++. ..|...-..-..             .--|-.|...+++...+.       |-+...+.              
T Consensus       189 ~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~n--------------  254 (660)
T COG5107         189 QTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTAN--------------  254 (660)
T ss_pred             cCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhc--------------
Confidence            4432221 111111100000             001122222222222110       00000000              


Q ss_pred             HHHHHHHHHhhCCChhHHhhHHHHHHHc-----CC-h-HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002729          222 AIMCYQRAVQTRPNAIAFGNLASTYYER-----GQ-A-DMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN  294 (887)
Q Consensus       222 A~~~~~~~~~~~p~~~~~~~la~~~~~~-----g~-~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  294 (887)
                            ++...  ...-|.+....-...     ++ . +.---.+++++...+-.++.|+.....+...++-+.|+...+
T Consensus       255 ------K~~r~--s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~  326 (660)
T COG5107         255 ------KAART--SDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVE  326 (660)
T ss_pred             ------ccccc--ccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHH
Confidence                  00000  001122221111111     01 1 112223445555555556666666666666666666666665


Q ss_pred             HHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcc------------------C------------CCchhHhhH
Q 002729          295 QCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT------------------T------------GLSAPFNNL  344 (887)
Q Consensus       295 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------------~------------~~~~~~~~l  344 (887)
                      +.+...|.   ....++..|...++-++...+|+++.+.-                  +            ....+|..+
T Consensus       327 rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~  403 (660)
T COG5107         327 RGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVH  403 (660)
T ss_pred             hcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHH
Confidence            55544433   44455555555555444444444433210                  0            111223333


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHH
Q 002729          345 AVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGN-TYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVE  423 (887)
Q Consensus       345 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  423 (887)
                      ...-.+..-.+.|.++|-++-+..-...+++..-|. -+...|++..|...|+-.+...|+++...+..-..+...++-+
T Consensus       404 ~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~  483 (660)
T COG5107         404 LNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEE  483 (660)
T ss_pred             HHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHH
Confidence            333344455666777777766554233333333332 2445677777777777777777777666666666677777777


Q ss_pred             HHHHHHHHHHHc
Q 002729          424 AAIKSYKQALLL  435 (887)
Q Consensus       424 ~A~~~~~~al~~  435 (887)
                      .|..+|+++++.
T Consensus       484 naraLFetsv~r  495 (660)
T COG5107         484 NARALFETSVER  495 (660)
T ss_pred             HHHHHHHHhHHH
Confidence            777777766654

>PRK15331 chaperone protein SicA; Provisional

Probab=98.61  E-value=6.8e-07  Score=80.49  Aligned_cols=99  Identities=15%  Similarity=0.012  Sum_probs=80.3

Q ss_pred             CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 002729           31 LRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASA  110 (887)
Q Consensus        31 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  110 (887)
                      +..+..+..|.-++..|++++|...|+-+...+|.++..++.+|.++..+++|++|+..|..+..++++++...+..|.|
T Consensus        35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC  114 (165)
T PRK15331         35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQC  114 (165)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHH
Confidence            34566777788888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHcCChHHHHHHHHHHHH
Q 002729          111 YMRKGRLNEAAQCCRQALA  129 (887)
Q Consensus       111 ~~~~g~~~~A~~~~~~~l~  129 (887)
                      +...|+.++|+..|+.++.
T Consensus       115 ~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        115 QLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             HHHhCCHHHHHHHHHHHHh
Confidence            8888888888888888776

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.60  E-value=9.5e-07  Score=93.70  Aligned_cols=120  Identities=18%  Similarity=0.137  Sum_probs=99.3

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 002729          310 LGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVT  389 (887)
Q Consensus       310 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~  389 (887)
                      +...+...++++.|+.++++..+.+|+   ....++.++...++..+|++.++++++.+|.+...+...+..+.+.++++
T Consensus       175 Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~  251 (395)
T PF09295_consen  175 LLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYE  251 (395)
T ss_pred             HHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence            344455566777777777777766654   45567888888888889999999999989999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 002729          390 DAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQA  432 (887)
Q Consensus       390 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  432 (887)
                      .|++..+++++..|++...|+.|+.+|.+.|++++|+..++.+
T Consensus       252 lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  252 LALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            9999999999999999999999999999999999998777654

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.59  E-value=4.6e-08  Score=96.01  Aligned_cols=226  Identities=18%  Similarity=0.175  Sum_probs=134.1

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHhhCC-ChhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 002729          208 NLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRV  286 (887)
Q Consensus       208 ~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~  286 (887)
                      ..|+-|+++|+|++|+.+|.+.+...| +...+.+.+.+|++.+.+..|..-+..++.++..+..+|...+.+-..+|+.
T Consensus       102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~  181 (536)
T KOG4648|consen  102 ERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN  181 (536)
T ss_pred             HhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence            345555555555555555555555555 3555555555555555555666666666655555566666666666666666


Q ss_pred             HHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchh---------HhhHHHHHHHcCCHHHH
Q 002729          287 DEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAP---------FNNLAVIYKQQGNYADA  357 (887)
Q Consensus       287 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------~~~la~~~~~~g~~~~A  357 (887)
                      .+|.+.++.++++.|++.+....++.+-.    ..++.-    +.+..|....+         ...-|..+...|.++.+
T Consensus       182 ~EAKkD~E~vL~LEP~~~ELkK~~a~i~S----l~E~~I----~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~  253 (536)
T KOG4648|consen  182 MEAKKDCETVLALEPKNIELKKSLARINS----LRERKI----ATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVP  253 (536)
T ss_pred             HHHHHhHHHHHhhCcccHHHHHHHHHhcc----hHhhhH----HhhcCCCCCccccchhhhccccCcchhhhhhhccccc
Confidence            66666666666666665544333332211    111110    01111111111         22335666777788888


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 002729          358 ISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRP  437 (887)
Q Consensus       358 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  437 (887)
                      +.++..-+.....+...-.+ +..+.+.-++++|+....+++..+|........-+.+-.-.|...++...++.++.+.|
T Consensus       254 i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P  332 (536)
T KOG4648|consen  254 VVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAP  332 (536)
T ss_pred             eeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeecc
Confidence            88777666554444443333 67778888889999888888888776555555555555566777888888888888888


Q ss_pred             CChHH
Q 002729          438 DFPEA  442 (887)
Q Consensus       438 ~~~~~  442 (887)
                      .+...
T Consensus       333 ~~~~~  337 (536)
T KOG4648|consen  333 AVETP  337 (536)
T ss_pred             ccccc
Confidence            76443

>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds

Probab=98.58  E-value=2.6e-07  Score=100.81  Aligned_cols=131  Identities=12%  Similarity=0.053  Sum_probs=89.8

Q ss_pred             CCcEEEEecCCCC-CCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccC
Q 002729          711 EDKFIFACFNQLY-KMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSL  789 (887)
Q Consensus       711 ~~~~~~~~~~~~~-k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~  789 (887)
                      .+.+++|.++++. |...+   +..++.+..|+..|+|+|.++... ...   ...+  .++|.|+|.+++++...+++.
T Consensus       203 ~~~~~i~y~G~l~~~~d~~---ll~~la~~~p~~~~vliG~~~~~~-~~~---~~~~--~~nV~~~G~~~~~~l~~~l~~  273 (373)
T cd04950         203 LPRPVIGYYGAIAEWLDLE---LLEALAKARPDWSFVLIGPVDVSI-DPS---ALLR--LPNVHYLGPKPYKELPAYLAG  273 (373)
T ss_pred             CCCCEEEEEeccccccCHH---HHHHHHHHCCCCEEEEECCCcCcc-Chh---Hhcc--CCCEEEeCCCCHHHHHHHHHh
Confidence            3456777777765 44444   445666788999999999762211 111   1111  478999999999999999999


Q ss_pred             CcEEecCCCCC------CchhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCccccCCHHHHHHHHHHH-hcC
Q 002729          790 ADLFLDTPLCN------AHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSL-ALD  859 (887)
Q Consensus       790 ~d~~ld~~~~~------g~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l-~~d  859 (887)
                      +||++-|+-.+      .++.++|+|+||+|||+...+...        ...+ ...++..|.+++++...+. ..+
T Consensus       274 ~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~~~~~--------~~~~-~~~~~~~d~~~~~~ai~~~l~~~  341 (373)
T cd04950         274 FDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPLPEVR--------RYED-EVVLIADDPEEFVAAIEKALLED  341 (373)
T ss_pred             CCEEecCCccchhhhcCCcchHHHHhccCCCEEecCcHHHH--------hhcC-cEEEeCCCHHHHHHHHHHHHhcC
Confidence            99999887533      156689999999999976543222        2222 2214457899999999984 444

The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.57  E-value=0.00084  Score=75.85  Aligned_cols=330  Identities=13%  Similarity=0.098  Sum_probs=141.3

Q ss_pred             HHHHHHHhhC---CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002729           20 EHSNSVYERN---PLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP---RFAECYGNMANAWKEKGDIDLAIRYYLVA   93 (887)
Q Consensus        20 ~~~~~~l~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~a   93 (887)
                      .+.++++...   ..+++....-..++...+-..+-++++++.+-.+.   .+......+.....+ -+.....++.++.
T Consensus       968 qLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rL 1046 (1666)
T KOG0985|consen  968 QLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRL 1046 (1666)
T ss_pred             HHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHh
Confidence            3455554422   23455555555666677777777777777653322   122222222222222 1223333333333


Q ss_pred             HhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHh----------------------CCCCHHHHHHHHHHHHHcCCh
Q 002729           94 IELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALAL----------------------NPLLVDAHSNLGNLMKAQGLV  151 (887)
Q Consensus        94 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----------------------~p~~~~~~~~la~~~~~~g~~  151 (887)
                      -..+..      .++.+....+-+++|...|++--..                      .-+.+..|..+|....+.|..
T Consensus      1047 dnyDa~------~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1047 DNYDAP------DIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred             ccCCch------hHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCch
Confidence            222211      1334444444555555555442100                      002334444455555555555


Q ss_pred             HHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002729          152 QEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ  231 (887)
Q Consensus       152 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  231 (887)
                      .+|++.|-++     +++..+........+.|+|++-+.++..+.+... .+.+-..+..+|.+.++..+-.+..     
T Consensus      1121 ~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~-E~~id~eLi~AyAkt~rl~elE~fi----- 1189 (1666)
T KOG0985|consen 1121 KDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR-EPYIDSELIFAYAKTNRLTELEEFI----- 1189 (1666)
T ss_pred             HHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc-CccchHHHHHHHHHhchHHHHHHHh-----
Confidence            5554444332     3334444444444444555544444444333221 1223333334444444433322221     


Q ss_pred             hCCChhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHH
Q 002729          232 TRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLG  311 (887)
Q Consensus       232 ~~p~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  311 (887)
                      ..|+..-....|.-++..+.|+.|.-+|...        .-|..++..+..+|+|+.|...-+++     ++..+|...+
T Consensus      1190 ~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~aRKA-----ns~ktWK~Vc 1256 (1666)
T KOG0985|consen 1190 AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDAARKA-----NSTKTWKEVC 1256 (1666)
T ss_pred             cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhhhc-----cchhHHHHHH
Confidence            1233333344444444555555444444322        23444555555555555555544443     2233444444


Q ss_pred             HHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 002729          312 NIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKE  384 (887)
Q Consensus       312 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  384 (887)
                      .++...+.+.-|.-+=-..    --.++-+-.+...|...|-+++-+.+++.++-+....-..+..+|..|.+
T Consensus      1257 faCvd~~EFrlAQiCGL~i----ivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1257 FACVDKEEFRLAQICGLNI----IVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred             HHHhchhhhhHHHhcCceE----EEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence            4444433333222110000    00112233455556666666666666666665554444445555555443

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.56  E-value=1.9e-05  Score=76.46  Aligned_cols=170  Identities=19%  Similarity=0.158  Sum_probs=98.2

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH---HHHH
Q 002729           33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF---AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFAD---AWSN  106 (887)
Q Consensus        33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~  106 (887)
                      +..|+.-|...++.|++++|++.|+.+....|..   ..+...++.++++.+++++|+...++-+...|.++.   +++.
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl  113 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL  113 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence            4455555555555555555555555555555443   345555555555555555555555555555554322   3444


Q ss_pred             HHHHHHHc--------CChHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCChHHHHHHHHHH
Q 002729          107 LASAYMRK--------GRLNEAAQCCRQALALNPLLV-----------------DAHSNLGNLMKAQGLVQEAYSCYLEA  161 (887)
Q Consensus       107 la~~~~~~--------g~~~~A~~~~~~~l~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~a  161 (887)
                      .|.+++..        .-..+|...|+..++..|++.                 .--...|..|.+.|.+..|+.-++.+
T Consensus       114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v  193 (254)
T COG4105         114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEV  193 (254)
T ss_pred             HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence            44443322        112344555555555555421                 12245777888888888888888888


Q ss_pred             HhhCCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002729          162 LRIQPTF---AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF  202 (887)
Q Consensus       162 l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~  202 (887)
                      ++..|+.   .+++..+..+|...|-.++|...-.-+-...|++
T Consensus       194 ~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s  237 (254)
T COG4105         194 LENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS  237 (254)
T ss_pred             HhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence            8775543   4566777778888888888776655544444544

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.55  E-value=7.6e-05  Score=77.47  Aligned_cols=427  Identities=15%  Similarity=0.078  Sum_probs=237.2

Q ss_pred             hhHHHHHHHhcCCHHHHHHHHHHHHhhCC----Cc-hhHHHHHHHHHHhcCCHHHHHHHHH---HHHhc---CC------
Q 002729            2 HMALAHQMYKSGSYKQALEHSNSVYERNP----LR-TDNLLLLGAIYYQLHDYDMCIARNE---EALRL---EP------   64 (887)
Q Consensus         2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p----~~-~~~~~~la~~~~~~g~~~~A~~~~~---~al~~---~p------   64 (887)
                      ++..|..++....+.+|++...+....-.    .. ...-+..-..+....+-++|+.++.   +++..   .+      
T Consensus       103 ~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~~~  182 (696)
T KOG2471|consen  103 DYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNHIP  182 (696)
T ss_pred             hhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Confidence            45667777777788888877776654321    11 1111222233444445555554433   22211   00      


Q ss_pred             ----------C-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHH
Q 002729           65 ----------R-----------FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQC  123 (887)
Q Consensus        65 ----------~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  123 (887)
                                .           ...+.......+.+..+...+..-.+.+.....+.+.+....++.++..|++.+|.+.
T Consensus       183 ~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~Kl  262 (696)
T KOG2471|consen  183 ANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKL  262 (696)
T ss_pred             hhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHH
Confidence                      0           0123344445566667777777777777777777788888888888889999988887


Q ss_pred             HHHHH-HhCCC--------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhh------------------CCChHHHHHHHH
Q 002729          124 CRQAL-ALNPL--------LVDAHSNLGNLMKAQGLVQEAYSCYLEALRI------------------QPTFAIAWSNLA  176 (887)
Q Consensus       124 ~~~~l-~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~la  176 (887)
                      +...- ...+.        .--.++++|.++++.|.+.-+..+|.++++.                  ........++.|
T Consensus       263 L~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG  342 (696)
T KOG2471|consen  263 LLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCG  342 (696)
T ss_pred             HHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhh
Confidence            75541 11222        1224678888888899998888888888851                  123356778888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHH--H--------------HhhC----
Q 002729          177 GLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGM---PQEAIMCYQR--A--------------VQTR----  233 (887)
Q Consensus       177 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~--~--------------~~~~----  233 (887)
                      ..|...|+.-.|.++|.++......+|..|..++.+.....+   .++......+  +              ++.+    
T Consensus       343 ~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~  422 (696)
T KOG2471|consen  343 LLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVE  422 (696)
T ss_pred             HHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceec
Confidence            889999999999999999988888888899888887654321   1111111111  0              0000    


Q ss_pred             -CC----hhHHhhHHHHHHHcC-----ChHHHHHHHHHHH---------h-------------------cCC-CcH----
Q 002729          234 -PN----AIAFGNLASTYYERG-----QADMAILYYKQAI---------G-------------------CDP-RFL----  270 (887)
Q Consensus       234 -p~----~~~~~~la~~~~~~g-----~~~~A~~~~~~~l---------~-------------------~~p-~~~----  270 (887)
                       +.    +..-..++.++.+.+     .-..--..+.-+.         +                   ..| ..+    
T Consensus       423 ~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e  502 (696)
T KOG2471|consen  423 LAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFE  502 (696)
T ss_pred             cccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHH
Confidence             00    111111222222111     0000000000000         0                   001 111    


Q ss_pred             -------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHH-----HcCChhHHHHHHHHHHhccCCCc
Q 002729          271 -------EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM-----EWNMLPAAASYYKATLAVTTGLS  338 (887)
Q Consensus       271 -------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~~~~~~~~~  338 (887)
                             .++...+.+-..+|+.-.|+..-.+.++. |+-..++..+|.+|.     ...+..+|...+.--.--+.+..
T Consensus       503 ~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~-~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~  581 (696)
T KOG2471|consen  503 DLENMRQAIFANMAYVELELGDPIKALSAATKLLQL-ADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFK  581 (696)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhh-hhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccc
Confidence                   13445566677888888888888888764 455666666666654     34455555544433111110100


Q ss_pred             hhHhhHHHHHHHcCCHHHHHHHHHHH----HhcCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CcHH
Q 002729          339 APFNNLAVIYKQQGNYADAISCYNEV----LRIDPLA-----ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRP--TMAE  407 (887)
Q Consensus       339 ~~~~~la~~~~~~g~~~~A~~~~~~a----l~~~p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~  407 (887)
                      ..++.     ...+.+.+--+.++-.    .+..|..     ...++++|.++.-+|++++|..++..+..+-+  .+++
T Consensus       582 ~~~n~-----~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~  656 (696)
T KOG2471|consen  582 LPYNQ-----EDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQ  656 (696)
T ss_pred             cccch-----hhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHH
Confidence            00000     0001100000000000    0001111     23678999999999999999999999988876  4455


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 002729          408 AHANLASAYKDSGHVEAAIKSYKQALL  434 (887)
Q Consensus       408 ~~~~la~~~~~~g~~~~A~~~~~~al~  434 (887)
                      +......+-.++|+...|...+++.--
T Consensus       657 A~~lavyidL~~G~~q~al~~lk~~~~  683 (696)
T KOG2471|consen  657 ATVLAVYIDLMLGRSQDALARLKQCTH  683 (696)
T ss_pred             HHHHHHHHHHhcCCCcchHHHHHhccc
Confidence            665556666778999999988887543

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.54  E-value=9.1e-07  Score=80.54  Aligned_cols=107  Identities=27%  Similarity=0.324  Sum_probs=93.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002729          343 NLAVIYKQQGNYADAISCYNEVLRIDPLAA-----DGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYK  417 (887)
Q Consensus       343 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  417 (887)
                      .-|.-++..|+|++|..-|..+++..|..+     -.|.+.|.++.+++.++.|++...++++++|.+..++...+.+|.
T Consensus       100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye  179 (271)
T KOG4234|consen  100 KEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE  179 (271)
T ss_pred             HHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence            446777888999999999999999887654     377888999999999999999999999999999999999999999


Q ss_pred             hCCCHHHHHHHHHHHHHcCCCChHHHHHHHHH
Q 002729          418 DSGHVEAAIKSYKQALLLRPDFPEATCNLLHT  449 (887)
Q Consensus       418 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  449 (887)
                      ++.++++|++.|+++++.+|....+.-.++..
T Consensus       180 k~ek~eealeDyKki~E~dPs~~ear~~i~rl  211 (271)
T KOG4234|consen  180 KMEKYEEALEDYKKILESDPSRREAREAIARL  211 (271)
T ss_pred             hhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence            99999999999999999999987776655543

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.54  E-value=0.0011  Score=75.08  Aligned_cols=285  Identities=14%  Similarity=0.136  Sum_probs=149.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 002729            5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDID   84 (887)
Q Consensus         5 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~   84 (887)
                      .|......+-|++|..+|++.- .   +..+...+.   -..++.+.|.++.++.     +.+..|..+|.+..+.|...
T Consensus      1054 ia~iai~~~LyEEAF~ifkkf~-~---n~~A~~VLi---e~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~ 1121 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFD-M---NVSAIQVLI---ENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVK 1121 (1666)
T ss_pred             HHHHHhhhhHHHHHHHHHHHhc-c---cHHHHHHHH---HHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchH
Confidence            5667777888888888887641 1   222222211   2334555555555443     34566666666666666666


Q ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------
Q 002729           85 LAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGL--------------  150 (887)
Q Consensus        85 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--------------  150 (887)
                      +|++.|-++     +++..|........+.|.|++-.+++.-+.+... .+..-..+...|.+.++              
T Consensus      1122 dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~-E~~id~eLi~AyAkt~rl~elE~fi~gpN~A 1195 (1666)
T KOG0985|consen 1122 DAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR-EPYIDSELIFAYAKTNRLTELEEFIAGPNVA 1195 (1666)
T ss_pred             HHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc-CccchHHHHHHHHHhchHHHHHHHhcCCCch
Confidence            666666543     3455566666666666666666666655543321 11222233334444444              


Q ss_pred             --------------hHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 002729          151 --------------VQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKAL  216 (887)
Q Consensus       151 --------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~  216 (887)
                                    |+.|.-+|..        ..-|..++..+...|+|..|....+++     ++..+|.....+....
T Consensus      1196 ~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKA-----ns~ktWK~VcfaCvd~ 1262 (1666)
T KOG0985|consen 1196 NIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKA-----NSTKTWKEVCFACVDK 1262 (1666)
T ss_pred             hHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhc-----cchhHHHHHHHHHhch
Confidence                          4444333322        122444455555555555555544443     2233333333333332


Q ss_pred             CChHHHHHHHHHHHhhCCChhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002729          217 GMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQC  296 (887)
Q Consensus       217 g~~~~A~~~~~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  296 (887)
                      +.+.-|.-+=   +.+--...-+-.+...|...|-+++-+.+++..+++.......+..++.+|.+- ++++-.+.++-.
T Consensus      1263 ~EFrlAQiCG---L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LF 1338 (1666)
T KOG0985|consen 1263 EEFRLAQICG---LNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLF 1338 (1666)
T ss_pred             hhhhHHHhcC---ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHH
Confidence            2222221100   000001344556677788888888888888888887777776777777776654 455555555433


Q ss_pred             HhcC--------CCChHHHHhHHHHHHHcCChhHHH
Q 002729          297 LSLQ--------PSHPQALTNLGNIYMEWNMLPAAA  324 (887)
Q Consensus       297 l~~~--------p~~~~~~~~l~~~~~~~g~~~~A~  324 (887)
                      ...-        -+....|..+..+|.+-..|+.|.
T Consensus      1339 wsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1339 WSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred             HHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence            3210        122345666777777666666654

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.52  E-value=3.1e-07  Score=72.20  Aligned_cols=66  Identities=29%  Similarity=0.409  Sum_probs=45.2

Q ss_pred             HhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 002729           10 YKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMAN   75 (887)
Q Consensus        10 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~   75 (887)
                      ++.|+|++|++.|++++..+|++..+++.++.++.+.|++++|...+++++..+|+++..+..++.
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            556777777777777777777777777777777777777777777777777777776665555543

...

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.51  E-value=2.4e-06  Score=75.34  Aligned_cols=81  Identities=23%  Similarity=0.398  Sum_probs=53.9

Q ss_pred             hhHHHHHHHhcCCHHHHHHHHHHHHhhCCC---chhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHH
Q 002729            2 HMALAHQMYKSGSYKQALEHSNSVYERNPL---RTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF---AECYGNMAN   75 (887)
Q Consensus         2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~   75 (887)
                      ++..|...++.|+|++|++.|+.+....|.   ...+.+.++.+|++.+++++|+..+++.++++|.+   ..+++..|.
T Consensus        13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL   92 (142)
T PF13512_consen   13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL   92 (142)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence            355667777777777777777777666653   35566777777777777777777777777777665   345666666


Q ss_pred             HHHHcCC
Q 002729           76 AWKEKGD   82 (887)
Q Consensus        76 ~~~~~g~   82 (887)
                      +++.+..
T Consensus        93 ~~~~~~~   99 (142)
T PF13512_consen   93 SYYEQDE   99 (142)
T ss_pred             HHHHHhh
Confidence            6665544

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.50  E-value=1.9e-06  Score=84.17  Aligned_cols=104  Identities=19%  Similarity=0.263  Sum_probs=92.4

Q ss_pred             HhhHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHH
Q 002729          341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLA---ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM---AEAHANLAS  414 (887)
Q Consensus       341 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~  414 (887)
                      .+..+.-+++.|+|.+|...|...++..|++   ++++++||.+++.+|++++|...|..+.+..|++   +++++.||.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            5667777888899999999999999998876   5799999999999999999999999999987665   788999999


Q ss_pred             HHHhCCCHHHHHHHHHHHHHcCCCChHHHH
Q 002729          415 AYKDSGHVEAAIKSYKQALLLRPDFPEATC  444 (887)
Q Consensus       415 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  444 (887)
                      +...+|+.++|...|+++.+..|+.+.+..
T Consensus       224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~  253 (262)
T COG1729         224 SLGRLGNTDEACATLQQVIKRYPGTDAAKL  253 (262)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence            999999999999999999999999876653

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.49  E-value=0.00031  Score=76.30  Aligned_cols=31  Identities=39%  Similarity=0.517  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 002729          406 AEAHANLASAYKDSGHVEAAIKSYKQALLLR  436 (887)
Q Consensus       406 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  436 (887)
                      ++++..++..+...|++++|-+.|-++++++
T Consensus       995 ~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen  995 GEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred             ccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence            3455555666666666666666666655554

>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]

Probab=98.49  E-value=1.3e-06  Score=93.27  Aligned_cols=169  Identities=13%  Similarity=0.088  Sum_probs=130.4

Q ss_pred             CCCCCCCCCCCCcEEEEecCCCC--CCCHHHHHHHHHHHhhcC-----CceEEEecCC------hh---hHHHHHHHHHH
Q 002729          701 QPKRSDYGLPEDKFIFACFNQLY--KMDPEIFNTWCNILRRVP-----NSALWLLRFP------AA---GEMRLRAYAVA  764 (887)
Q Consensus       701 ~~~r~~~~l~~~~~~~~~~~~~~--k~~~~~~~~~~~il~~~p-----~~~l~~~~~~------~~---~~~~l~~~~~~  764 (887)
                      .+.|...|+....+.|.++|+..  |...-.+..+.+.....|     .-++.+.|..      ..   ....|++...+
T Consensus       261 ~~~r~~~~v~~~d~~~~siN~~~pgkd~~l~l~a~~~~~~~i~~~~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~  340 (495)
T KOG0853|consen  261 LPVRLYRGVSGIDRFFPSINRFEPGKDQDLALPAFTLLHDSIPEPSISSEHLVVAGSRGYDERDSENVEYLKELLSLIEE  340 (495)
T ss_pred             cccceeeeecccceEeeeeeecCCCCCceeehhhHHhhhcccCCCCCCceEEEEecCCCccccchhhHHHHHHHHHHHHH
Confidence            45677778888789999999964  777778888877776664     4466666622      11   12467888999


Q ss_pred             cCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeee-cccchhhhhHHHHHHhcCCCCccc
Q 002729          765 QGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITL-PLEKMATRVAGSLCLATGLGEEMI  842 (887)
Q Consensus       765 ~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~-~g~~~~~r~~~~~l~~~g~~~~~~  842 (887)
                      .++..+.|.|+...+..+-..++..+...+-+...+. |.|++|||++|+|||.. .|.+....+.       |.++.++
T Consensus       341 ~~l~g~~v~~~~s~~~~~~yrl~adt~~v~~qPa~E~FGiv~IEAMa~glPvvAt~~GGP~EiV~~-------~~tG~l~  413 (495)
T KOG0853|consen  341 YDLLGQFVWFLPSTTRVAKYRLAADTKGVLYQPANEHFGIVPIEAMACGLPVVATNNGGPAEIVVH-------GVTGLLI  413 (495)
T ss_pred             hCccCceEEEecCCchHHHHHHHHhcceEEecCCCCCccceeHHHHhcCCCEEEecCCCceEEEEc-------CCcceee
Confidence            9998889999998888777888899999999977777 99999999999999865 4544443333       6777355


Q ss_pred             cCCHH---HHHHHHHHHhcCHHHHHHHHHHHHhhccc
Q 002729          843 VNSMK---EYEERAVSLALDRQKLQALTNKLKSVRLT  876 (887)
Q Consensus       843 ~~~~~---~y~~~a~~l~~d~~~~~~~~~~~~~~~~~  876 (887)
                      ..+.+   .+....+++.+|++.+.+++++-+++...
T Consensus       414 dp~~e~~~~~a~~~~kl~~~p~l~~~~~~~G~~rV~e  450 (495)
T KOG0853|consen  414 DPGQEAVAELADALLKLRRDPELWARMGKNGLKRVKE  450 (495)
T ss_pred             CCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            56555   49999999999999999999998887654

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.48  E-value=0.00011  Score=70.35  Aligned_cols=185  Identities=21%  Similarity=0.329  Sum_probs=123.8

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHhhCCChhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 002729          208 NLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVD  287 (887)
Q Consensus       208 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~  287 (887)
                      ..+.+....|+..+.+.-+......-      ..+..........+..++.+++-++      .+.+.+..++...|.|.
T Consensus       127 lhAe~~~~lgnpqesLdRl~~L~~~V------~~ii~~~e~~~~~ESsv~lW~KRl~------~Vmy~~~~~llG~kEy~  194 (366)
T KOG2796|consen  127 LHAELQQYLGNPQESLDRLHKLKTVV------SKILANLEQGLAEESSIRLWRKRLG------RVMYSMANCLLGMKEYV  194 (366)
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHH------HHHHHHHHhccchhhHHHHHHHHHH------HHHHHHHHHHhcchhhh
Confidence            34555566677777666655544321      1122222333333556666666543      35677788888888888


Q ss_pred             HHHHHHHHHHhcC-CCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcc------CCCchhHhhHHHHHHHcCCHHHHHHH
Q 002729          288 EAIQCYNQCLSLQ-PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT------TGLSAPFNNLAVIYKQQGNYADAISC  360 (887)
Q Consensus       288 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~  360 (887)
                      -....+++.++.+ |.++.....+|.+.++.|+.+.|..+|+...+..      ..+.....+.+.++.-.+++.+|...
T Consensus       195 iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~  274 (366)
T KOG2796|consen  195 LSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRF  274 (366)
T ss_pred             hhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHH
Confidence            8888998888887 5677788888888888888888888888554332      12233445566666667777777777


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002729          361 YNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT  404 (887)
Q Consensus       361 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  404 (887)
                      +.+++..+|.++.+.++.+.|+.-.|+..+|++.++.+++..|.
T Consensus       275 ~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~  318 (366)
T KOG2796|consen  275 FTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR  318 (366)
T ss_pred             HhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence            77777777777777777777777777777777777777777665

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=98.48  E-value=0.0061  Score=70.86  Aligned_cols=179  Identities=17%  Similarity=0.077  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHHhhCC----CchhHHHHHHHHHH-hcCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCCHH
Q 002729           16 KQALEHSNSVYERNP----LRTDNLLLLGAIYY-QLHDYDMCIARNEEALRLEPRF------AECYGNMANAWKEKGDID   84 (887)
Q Consensus        16 ~~A~~~~~~~l~~~p----~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~   84 (887)
                      ..|+++++-+++..+    ....+.+.+|.+++ ...++++|..++++++.+..++      ..+.+.++.++.+.+...
T Consensus        38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~  117 (608)
T PF10345_consen   38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA  117 (608)
T ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence            445666776664322    23456777887776 6778888888888887665332      234556677777777766


Q ss_pred             HHHHHHHHHHhcCCC---cHH-HHHHH--HHHHHHcCChHHHHHHHHHHHHhC--CCCHHH----HHHHHHHHHHcCChH
Q 002729           85 LAIRYYLVAIELRPN---FAD-AWSNL--ASAYMRKGRLNEAAQCCRQALALN--PLLVDA----HSNLGNLMKAQGLVQ  152 (887)
Q Consensus        85 ~A~~~~~~al~~~p~---~~~-~~~~l--a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~----~~~la~~~~~~g~~~  152 (887)
                       |...+++.++...+   ... ..+.+  +..+...+++..|.+.++......  ..++.+    ....+.+....+..+
T Consensus       118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~  196 (608)
T PF10345_consen  118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD  196 (608)
T ss_pred             -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence             88888887775433   111 11112  222223368888888888877654  344332    223345555667677


Q ss_pred             HHHHHHHHHHhhC----------CChHHHHHHHHHH--HHHcCCHHHHHHHHHHH
Q 002729          153 EAYSCYLEALRIQ----------PTFAIAWSNLAGL--FMESGDLNRALQYYKEA  195 (887)
Q Consensus       153 ~A~~~~~~al~~~----------p~~~~~~~~la~~--~~~~g~~~~A~~~~~~~  195 (887)
                      ++++..+++....          +....+|..+..+  +...|+++.+...++++
T Consensus       197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l  251 (608)
T PF10345_consen  197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL  251 (608)
T ss_pred             hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            7777776664321          1223444444433  34556655655544443

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=98.46  E-value=0.0031  Score=65.65  Aligned_cols=431  Identities=14%  Similarity=0.040  Sum_probs=240.0

Q ss_pred             hHHHHHHHhcCCHHHHHHHHHHHHhhCCCch-----hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 002729            3 MALAHQMYKSGSYKQALEHSNSVYERNPLRT-----DNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAW   77 (887)
Q Consensus         3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   77 (887)
                      ...|-.+-+++++.+|.++|.++.+...+++     +.+..+....+-+++.+.-...+...-+..|+.+......|...
T Consensus        10 c~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~   89 (549)
T PF07079_consen   10 CFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVA   89 (549)
T ss_pred             HHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence            4567788899999999999999987655442     34444555556677888777777777778888888888899999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCC---------------cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-C----CCHHH
Q 002729           78 KEKGDIDLAIRYYLVAIELRPN---------------FADAWSNLASAYMRKGRLNEAAQCCRQALALN-P----LLVDA  137 (887)
Q Consensus        78 ~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p----~~~~~  137 (887)
                      ++.+++.+|++.+....+.-..               +...-...+.++...|++.++...+++++..- +    -+.+.
T Consensus        90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~  169 (549)
T PF07079_consen   90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM  169 (549)
T ss_pred             HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence            9999999999988766554111               11122346788899999999999999987652 2    24444


Q ss_pred             HHH----HHHHHHH----cCChHHHHHHHHHHH-------hh--------CCChHHHHHHHHHHHH----HcCCHHHHHH
Q 002729          138 HSN----LGNLMKA----QGLVQEAYSCYLEAL-------RI--------QPTFAIAWSNLAGLFM----ESGDLNRALQ  190 (887)
Q Consensus       138 ~~~----la~~~~~----~g~~~~A~~~~~~al-------~~--------~p~~~~~~~~la~~~~----~~g~~~~A~~  190 (887)
                      +..    +|..|.-    ....+-+..+|+.++       ..        .|.+.-.-..+-.++.    +.--+-++++
T Consensus       170 yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~  249 (549)
T PF07079_consen  170 YDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILE  249 (549)
T ss_pred             HHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHH
Confidence            444    3333321    111111122221111       11        1111000000000000    0000111111


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-----CC-hhHHhhHHHHHHHcCChHHHHHHHHHHHh
Q 002729          191 YYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR-----PN-AIAFGNLASTYYERGQADMAILYYKQAIG  264 (887)
Q Consensus       191 ~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~  264 (887)
                      .+++- -.+|+..-+...+..-...  +.+++....+.+....     .. ...+..+-....+.++..+|.+++.-...
T Consensus       250 ~We~~-yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~  326 (549)
T PF07079_consen  250 NWENF-YVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI  326 (549)
T ss_pred             HHHhh-ccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence            11110 1133332222222222222  4444444444333221     11 34445555566777888888888887777


Q ss_pred             cCCCcHHHHHH------HHHHHH-HcCCH---HHHHHHHHHHHhcCCCCh---HHHHhHHHHHHHcCC-hhHHHHHHHHH
Q 002729          265 CDPRFLEAYNN------LGNALK-DVGRV---DEAIQCYNQCLSLQPSHP---QALTNLGNIYMEWNM-LPAAASYYKAT  330 (887)
Q Consensus       265 ~~p~~~~~~~~------la~~~~-~~g~~---~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~-~~~A~~~~~~~  330 (887)
                      .+|+.....-.      +-.+.+ ....+   ..=+..++.+-..+-+..   .-+..-+.-+.+.|. -++|+.+++.+
T Consensus       327 ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~i  406 (549)
T PF07079_consen  327 LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLI  406 (549)
T ss_pred             cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence            88876521111      111111 11111   122223333322333322   233445666777777 88899999999


Q ss_pred             HhccCCCchhHhhHHHHHHHcCCHHHHHH--HHHHHHh---------cCC---CCHHHHHHH--HHHHHHcCCHHHHHHH
Q 002729          331 LAVTTGLSAPFNNLAVIYKQQGNYADAIS--CYNEVLR---------IDP---LAADGLVNR--GNTYKEIGRVTDAIQD  394 (887)
Q Consensus       331 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~---------~~p---~~~~~~~~l--~~~~~~~g~~~~A~~~  394 (887)
                      ++..+.+...-+..-.. . ...|.+|+.  .+.+.++         +.|   .+.+.-+.+  |..++..|+|.++.-+
T Consensus       407 l~ft~yD~ec~n~v~~f-v-Kq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~y  484 (549)
T PF07079_consen  407 LQFTNYDIECENIVFLF-V-KQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLY  484 (549)
T ss_pred             HHhccccHHHHHHHHHH-H-HHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence            98888776543322111 1 112333322  1222222         122   223333333  5567788999999988


Q ss_pred             HHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHH
Q 002729          395 YIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEAT  443 (887)
Q Consensus       395 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  443 (887)
                      -.=..+..| ++.++..+|.++...++|++|..++...    |.+.+.+
T Consensus       485 s~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L----P~n~~~~  528 (549)
T PF07079_consen  485 SSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL----PPNERMR  528 (549)
T ss_pred             HHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC----CCchhhH
Confidence            888889999 7999999999999999999999998764    4454443

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.44  E-value=5.8e-05  Score=73.22  Aligned_cols=176  Identities=22%  Similarity=0.205  Sum_probs=105.8

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH---HHH
Q 002729           66 FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPN---FADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVD---AHS  139 (887)
Q Consensus        66 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~  139 (887)
                      .+..++.-|....+.|++++|+..|+.+....|.   ...+...++.++++.+++++|+..+++.+.+.|.++.   +++
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y  112 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY  112 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence            4677888889999999999999999999888766   3567888899999999999999999999998877654   455


Q ss_pred             HHHHHHHHcC--------ChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002729          140 NLGNLMKAQG--------LVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGN  211 (887)
Q Consensus       140 ~la~~~~~~g--------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~  211 (887)
                      ..|.++...=        -..+|...|+..+...|++.-+-.....           +..+...      ...--..+++
T Consensus       113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~-----------i~~~~d~------LA~~Em~Iar  175 (254)
T COG4105         113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKAR-----------IVKLNDA------LAGHEMAIAR  175 (254)
T ss_pred             HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHH-----------HHHHHHH------HHHHHHHHHH
Confidence            5555543321        1234445555555555554322111000           0000000      0112234455


Q ss_pred             HHHHcCChHHHHHHHHHHHhhCCC----hhHHhhHHHHHHHcCChHHHHHH
Q 002729          212 VYKALGMPQEAIMCYQRAVQTRPN----AIAFGNLASTYYERGQADMAILY  258 (887)
Q Consensus       212 ~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~la~~~~~~g~~~~A~~~  258 (887)
                      .|.+.|.+..|+.-++.+++..|+    .+++..+..+|...|-.++|...
T Consensus       176 yY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~  226 (254)
T COG4105         176 YYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKT  226 (254)
T ss_pred             HHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHH
Confidence            556666666666666665555444    34445555555555555555443

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.44  E-value=3.1e-06  Score=77.16  Aligned_cols=113  Identities=27%  Similarity=0.314  Sum_probs=83.7

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 002729           33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF-----AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNL  107 (887)
Q Consensus        33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  107 (887)
                      ...+-.-|.-++..|+|++|..-|..++...|..     ...|.+.|.+..+++.++.|+....++++++|.+..++...
T Consensus        95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR  174 (271)
T KOG4234|consen   95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR  174 (271)
T ss_pred             HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence            3444556777777888888888888888777753     34667777778888888888888888888888777777777


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002729          108 ASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLM  145 (887)
Q Consensus       108 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~  145 (887)
                      +.+|.+...+++|++-|+++++.+|....+.-..+.+-
T Consensus       175 Aeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~  212 (271)
T KOG4234|consen  175 AEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLP  212 (271)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcC
Confidence            88888888888888888888888877766655555443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.42  E-value=8.3e-07  Score=69.76  Aligned_cols=63  Identities=22%  Similarity=0.321  Sum_probs=32.1

Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 002729          350 QQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANL  412 (887)
Q Consensus       350 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  412 (887)
                      +.|++++|++.|+++++.+|++..+++.++.++.+.|++++|...+++++..+|+++.++..+
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~   65 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL   65 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            345555555555555555555555555555555555555555555555555555544444433

...

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.41  E-value=6.9e-06  Score=71.46  Aligned_cols=95  Identities=23%  Similarity=0.251  Sum_probs=64.8

Q ss_pred             hHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---cHHHHHHHH
Q 002729          340 PFNNLAVIYKQQGNYADAISCYNEVLRIDPLA---ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT---MAEAHANLA  413 (887)
Q Consensus       340 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la  413 (887)
                      +++.++.++-..|+.++|+.+|++++......   ..++..+|..+..+|++++|+..+++.+...|+   +..+...++
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A   82 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA   82 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence            45566667777777777777777777654333   346677777777777777777777777776666   556666677


Q ss_pred             HHHHhCCCHHHHHHHHHHHHH
Q 002729          414 SAYKDSGHVEAAIKSYKQALL  434 (887)
Q Consensus       414 ~~~~~~g~~~~A~~~~~~al~  434 (887)
                      .++...|+.++|++.+-.++.
T Consensus        83 l~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   83 LALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHCCCHHHHHHHHHHHHH
Confidence            777777777777777766554

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.41  E-value=4.1e-05  Score=69.22  Aligned_cols=124  Identities=21%  Similarity=0.238  Sum_probs=72.2

Q ss_pred             HHhHHHHHHHcCChhHHHHHHHHHHh-ccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHH
Q 002729          307 LTNLGNIYMEWNMLPAAASYYKATLA-VTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP--LAADGLVNRGNTYK  383 (887)
Q Consensus       307 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~  383 (887)
                      .+.++..+.+.|++.+|...|++++. ..-.++.....++...+..+++.+|...+++..+.+|  ..++....+|..+.
T Consensus        92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~la  171 (251)
T COG4700          92 RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLA  171 (251)
T ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHH
Confidence            34455555555555555555555443 2344455555566666666666666666666666655  23556666666666


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 002729          384 EIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ  431 (887)
Q Consensus       384 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  431 (887)
                      ..|++.+|...|+.++...|+ +.+....+..+.++|+..+|..-+..
T Consensus       172 a~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~  218 (251)
T COG4700         172 AQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVA  218 (251)
T ss_pred             hcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHH
Confidence            666666666666666666665 45555566666666666555544433

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.40  E-value=8.8e-06  Score=70.79  Aligned_cols=91  Identities=23%  Similarity=0.108  Sum_probs=37.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---cHHHHHHHHH
Q 002729           36 LLLLGAIYYQLHDYDMCIARNEEALRLEPRF---AECYGNMANAWKEKGDIDLAIRYYLVAIELRPN---FADAWSNLAS  109 (887)
Q Consensus        36 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~  109 (887)
                      ++.+|.++-..|+.++|+..|++++......   ..++..+|..+...|++++|+..+++.+...|+   +..+...++.
T Consensus         4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al   83 (120)
T PF12688_consen    4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLAL   83 (120)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence            3344444444444444444444444432221   233444444444444444444444444443333   3333333444


Q ss_pred             HHHHcCChHHHHHHHHH
Q 002729          110 AYMRKGRLNEAAQCCRQ  126 (887)
Q Consensus       110 ~~~~~g~~~~A~~~~~~  126 (887)
                      ++...|+.++|+..+-.
T Consensus        84 ~L~~~gr~~eAl~~~l~  100 (120)
T PF12688_consen   84 ALYNLGRPKEALEWLLE  100 (120)
T ss_pred             HHHHCCCHHHHHHHHHH
Confidence            44444444444444433

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.40  E-value=4.5e-05  Score=68.98  Aligned_cols=147  Identities=20%  Similarity=0.222  Sum_probs=75.8

Q ss_pred             hHHHHHHHHHHHhhCCChhHHhhHHHHHHHcCChHHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002729          219 PQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAI-GCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCL  297 (887)
Q Consensus       219 ~~~A~~~~~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~~l-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  297 (887)
                      ++....-..+.++..|.....+.++..+.+.|++.+|...|++++ +..-.+......+++..+..+++..|...+++..
T Consensus        72 P~R~~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~  151 (251)
T COG4700          72 PERHLREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLM  151 (251)
T ss_pred             hhHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence            333333344444444555555555555555555555555555555 3444445555555555555555555555555555


Q ss_pred             hcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 002729          298 SLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVN  377 (887)
Q Consensus       298 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  377 (887)
                      +.+|..                                ..+.....++..+..+|++.+|...|+.++...|. +.+...
T Consensus       152 e~~pa~--------------------------------r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~  198 (251)
T COG4700         152 EYNPAF--------------------------------RSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIY  198 (251)
T ss_pred             hcCCcc--------------------------------CCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHH
Confidence            554431                                12333444455555555555555555555555443 344445


Q ss_pred             HHHHHHHcCCHHHHHHHHHHH
Q 002729          378 RGNTYKEIGRVTDAIQDYIRA  398 (887)
Q Consensus       378 l~~~~~~~g~~~~A~~~~~~a  398 (887)
                      .+..+.++|+..+|..-+...
T Consensus       199 Y~e~La~qgr~~ea~aq~~~v  219 (251)
T COG4700         199 YAEMLAKQGRLREANAQYVAV  219 (251)
T ss_pred             HHHHHHHhcchhHHHHHHHHH
Confidence            555666666555555444433

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.39  E-value=4.1e-06  Score=70.64  Aligned_cols=109  Identities=19%  Similarity=0.289  Sum_probs=78.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHhC
Q 002729          344 LAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM----AEAHANLASAYKDS  419 (887)
Q Consensus       344 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~  419 (887)
                      -|..+...|+.+.|++.|.+++.+.|..+.+|++.+..+.-+|+.++|++.+++++++..+.    -.++...|.+|...
T Consensus        49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~  128 (175)
T KOG4555|consen   49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL  128 (175)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence            35566677777778888887777777777778888888777788888888888877775432    34677788888888


Q ss_pred             CCHHHHHHHHHHHHHcCCCChHHHHHHHHHhhh
Q 002729          420 GHVEAAIKSYKQALLLRPDFPEATCNLLHTLQC  452 (887)
Q Consensus       420 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  452 (887)
                      |+-+.|...|+.+-+++.....-....++-|..
T Consensus       129 g~dd~AR~DFe~AA~LGS~FAr~QLV~lNPYAA  161 (175)
T KOG4555|consen  129 GNDDAARADFEAAAQLGSKFAREQLVELNPYAA  161 (175)
T ss_pred             CchHHHHHhHHHHHHhCCHHHHHHHHhcChHHH
Confidence            888888888888888876655444444444443

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=98.37  E-value=0.0056  Score=64.64  Aligned_cols=426  Identities=13%  Similarity=0.077  Sum_probs=214.1

Q ss_pred             HHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhc
Q 002729           18 ALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD-IDLAIRYYLVAIEL   96 (887)
Q Consensus        18 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~   96 (887)
                      -..+|+.+..+.+.+...|........+.+.+.+-..+|.+++..+|+++..|..-|.-.+.-+. .+.|...|.+.+..
T Consensus        90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~  169 (568)
T KOG2396|consen   90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRF  169 (568)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence            34566677777777777777776666666667777777777777777777777777766666554 77777777777777


Q ss_pred             CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------C---Ch--------HHH--
Q 002729           97 RPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQ---------G---LV--------QEA--  154 (887)
Q Consensus        97 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---------g---~~--------~~A--  154 (887)
                      +|+++..|...-..-..-   -+=...-++.+..+..+.+.-...+......         +   ..        +..  
T Consensus       170 npdsp~Lw~eyfrmEL~~---~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~ke  246 (568)
T KOG2396|consen  170 NPDSPKLWKEYFRMELMY---AEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKE  246 (568)
T ss_pred             CCCChHHHHHHHHHHHHH---HHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHH
Confidence            777777665443332110   0000000111111111110000000000000         0   00        000  


Q ss_pred             --HHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002729          155 --YSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT  232 (887)
Q Consensus       155 --~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  232 (887)
                        ....+......|.++..|..++.-..            +-..+..-.   -..+......---+-+-...+|+.+++.
T Consensus       247 l~k~i~d~~~~~~~~np~~~~~laqr~l------------~i~~~tdl~---~~~~~~~~~~~~~k~s~~~~v~ee~v~~  311 (568)
T KOG2396|consen  247 LQKNIIDDLQSKAPDNPLLWDDLAQREL------------EILSQTDLQ---HTDNQAKAVEVGSKESRCCAVYEEAVKT  311 (568)
T ss_pred             HHHHHHHHHhccCCCCCccHHHHHHHHH------------HHHHHhhcc---chhhhhhchhcchhHHHHHHHHHHHHHH
Confidence              00001111123334433333332111            100000000   0000000111111122334666666665


Q ss_pred             CCChhHHhhHHHHHHHc-----C-ChHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCC
Q 002729          233 RPNAIAFGNLASTYYER-----G-QADMAILYYKQAIG---CDPRFLEAYNNLGNALKDVGRVDEAI-QCYNQCLSLQPS  302 (887)
Q Consensus       233 ~p~~~~~~~la~~~~~~-----g-~~~~A~~~~~~~l~---~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~  302 (887)
                      -+....|......+...     | ....-..+++++.+   ..+....-|..+..++.....-.++. .....   ...+
T Consensus       312 l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e---~f~~  388 (568)
T KOG2396|consen  312 LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTE---LFRD  388 (568)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHH---Hhcc
Confidence            55543333322222211     1 23334444555543   34555666666666666655433322 22222   2345


Q ss_pred             ChHHHHhHHHHHHHcCChhHHHHHHHH---HHhccCCC--chhHhhHHHHHHHcCC-HHHHHH--HHHHHHhc-CCCCHH
Q 002729          303 HPQALTNLGNIYMEWNMLPAAASYYKA---TLAVTTGL--SAPFNNLAVIYKQQGN-YADAIS--CYNEVLRI-DPLAAD  373 (887)
Q Consensus       303 ~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~--~~~~~~la~~~~~~g~-~~~A~~--~~~~al~~-~p~~~~  373 (887)
                      +...|............  .+.-.|..   .++..+.+  ...|..-.     .++ ......  .+...... .++...
T Consensus       389 s~k~~~~kl~~~~~s~s--D~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~~~~~~~t  461 (568)
T KOG2396|consen  389 SGKMWQLKLQVLIESKS--DFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSVIGADSVT  461 (568)
T ss_pred             hHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHhcCCceee
Confidence            55555544444432211  11111111   11111111  11121111     222 222221  11112221 345555


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHcCCCChHHHHHHHHHhh
Q 002729          374 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDS--GHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ  451 (887)
Q Consensus       374 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  451 (887)
                      .-..+-..+.+.|-+.+|.+.|.+...+.|-....+..+...-..+  -+...++++|+.++.....+++.|.+.+..-.
T Consensus       462 l~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~  541 (568)
T KOG2396|consen  462 LKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEEL  541 (568)
T ss_pred             hhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhc
Confidence            5666777888899999999999999999998888777777654442  24888999999999988899999999999888


Q ss_pred             hcCChhhHhHHHHHHHHHHH
Q 002729          452 CVCSWEDRDRMFSEVEGIIR  471 (887)
Q Consensus       452 ~~g~~~~a~~~~~~~~~~~~  471 (887)
                      ..|..+.+..++.++.+.++
T Consensus       542 ~~g~~en~~~~~~ra~ktl~  561 (568)
T KOG2396|consen  542 PLGRPENCGQIYWRAMKTLQ  561 (568)
T ss_pred             cCCCcccccHHHHHHHHhhC
Confidence            99999999988888877543

>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional

Probab=98.36  E-value=1.7e-06  Score=101.74  Aligned_cols=154  Identities=10%  Similarity=0.083  Sum_probs=106.5

Q ss_pred             CcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCce--E--EEecCCh----hhHHHHHHHHHHcC--CCC--C-----cE
Q 002729          712 DKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSA--L--WLLRFPA----AGEMRLRAYAVAQG--VQP--D-----QI  772 (887)
Q Consensus       712 ~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~--l--~~~~~~~----~~~~~l~~~~~~~g--~~~--~-----r~  772 (887)
                      +..++++..|+  .|..+..+++|.++++..|+.+  +  ++++.+.    ...+.+++.+.+.+  |..  .     -|
T Consensus       278 ~~~lIl~VgRLd~~KGi~~lL~Afe~lL~~~P~~~~kvvLvqia~psr~~~~~y~~l~~~v~~l~g~In~~~g~~~~~pv  357 (797)
T PLN03063        278 GRKVILGVDRLDMIKGIPQKYLAFEKFLEENPEWRDKVMLVQIAVPTRNDVPEYQKLKSQVHELVGRINGRFGSVSSVPI  357 (797)
T ss_pred             CCeEEEEecccccccCHHHHHHHHHHHHHhCccccCcEEEEEEecCCCCchHHHHHHHHHHHHHHHHhhcccccCCCcee
Confidence            45677788876  5999999999999999999863  3  3333221    11346777776664  321  1     13


Q ss_pred             EEc-CCCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCc----eeeecccchhhhhHHHHHHhcCCCCcccc--C
Q 002729          773 IFT-DVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLP----MITLPLEKMATRVAGSLCLATGLGEEMIV--N  844 (887)
Q Consensus       773 ~~~-~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvP----vvt~~g~~~~~r~~~~~l~~~g~~~~~~~--~  844 (887)
                      ++. +.++.++..++|+.+||||-|+-+.| |++.+|||+||+|    +|.-.-...+.     .   +|-.. +++  .
T Consensus       358 ~~l~~~v~~~el~aly~~ADvfvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G~~~-----~---l~~~a-llVnP~  428 (797)
T PLN03063        358 HHLDCSVDFNYLCALYAITDVMLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAGAGQ-----S---LGAGA-LLVNPW  428 (797)
T ss_pred             EEecCCCCHHHHHHHHHhCCEEEeCccccccCcchhhHheeecCCCCCEEeeCCcCchh-----h---hcCCe-EEECCC
Confidence            333 36788999999999999999998989 9999999999998    55321111111     1   23334 443  7


Q ss_pred             CHHHHHHHHHHHhc-CHHHHHHHHHHHHhhc
Q 002729          845 SMKEYEERAVSLAL-DRQKLQALTNKLKSVR  874 (887)
Q Consensus       845 ~~~~y~~~a~~l~~-d~~~~~~~~~~~~~~~  874 (887)
                      |.++..+...++.+ +++.+++..+++++..
T Consensus       429 D~~~lA~AI~~aL~m~~~er~~r~~~~~~~v  459 (797)
T PLN03063        429 NITEVSSAIKEALNMSDEERETRHRHNFQYV  459 (797)
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence            88998888888888 7777777777676654

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.35  E-value=2.3e-06  Score=68.29  Aligned_cols=62  Identities=29%  Similarity=0.537  Sum_probs=30.6

Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 002729          347 IYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEA  408 (887)
Q Consensus       347 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  408 (887)
                      +|.+.+++++|+++++++++.+|+++..+..+|.++...|++++|++.++++++..|+++.+
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~   65 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA   65 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence            44444555555555555555555555555555555555555555555555555444444433

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.33  E-value=1.3e-05  Score=70.72  Aligned_cols=85  Identities=21%  Similarity=0.212  Sum_probs=68.4

Q ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH---HHH
Q 002729           32 RTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF---AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFAD---AWS  105 (887)
Q Consensus        32 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~  105 (887)
                      .+..++..|...++.|+|++|++.|+.+....|..   ..+...++.+|++.+++++|+..+++.++++|.++.   +++
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y   88 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY   88 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence            46778888888899999999999999888887753   578888888999999999999999998888887643   667


Q ss_pred             HHHHHHHHcCC
Q 002729          106 NLASAYMRKGR  116 (887)
Q Consensus       106 ~la~~~~~~g~  116 (887)
                      ..|.+++.+..
T Consensus        89 ~~gL~~~~~~~   99 (142)
T PF13512_consen   89 MRGLSYYEQDE   99 (142)
T ss_pred             HHHHHHHHHhh
Confidence            77777666544

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.33  E-value=3.1e-06  Score=67.61  Aligned_cols=67  Identities=22%  Similarity=0.291  Sum_probs=40.3

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 002729            6 AHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGN   72 (887)
Q Consensus         6 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   72 (887)
                      ...++++++|++|++.+++++..+|.++..+..+|.++...|++++|++.++++++..|++..+...
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~   68 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL   68 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence            3455666666666666666666666666666666666666666666666666666666655544433

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=98.31  E-value=0.00013  Score=77.36  Aligned_cols=108  Identities=26%  Similarity=0.372  Sum_probs=95.5

Q ss_pred             hHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCC
Q 002729          343 NLAVIYKQQGNYADAISCYNEVLRIDPLAA-DGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGH  421 (887)
Q Consensus       343 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  421 (887)
                      ..|......|+...|++++..++...|... ..+.+++.++.+.|...+|-..+.+++.+....+-.++.+|.+|..+.+
T Consensus       612 ~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~  691 (886)
T KOG4507|consen  612 EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKN  691 (886)
T ss_pred             cccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhh
Confidence            334555678999999999999999988654 4788999999999999999999999999998888999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCChHHHHHHHHHh
Q 002729          422 VEAAIKSYKQALLLRPDFPEATCNLLHTL  450 (887)
Q Consensus       422 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~  450 (887)
                      .+.|++.|+++++++|+++..-..|....
T Consensus       692 i~~a~~~~~~a~~~~~~~~~~~~~l~~i~  720 (886)
T KOG4507|consen  692 ISGALEAFRQALKLTTKCPECENSLKLIR  720 (886)
T ss_pred             hHHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence            99999999999999999998887765543

>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1

Probab=98.30  E-value=7.9e-06  Score=91.28  Aligned_cols=150  Identities=13%  Similarity=0.054  Sum_probs=116.7

Q ss_pred             cEEEEecCC-CCCCCHHHHHHHHHHHhhcCCceEEEecCChh--hHHHHHHHHHHcCCC---------------------
Q 002729          713 KFIFACFNQ-LYKMDPEIFNTWCNILRRVPNSALWLLRFPAA--GEMRLRAYAVAQGVQ---------------------  768 (887)
Q Consensus       713 ~~~~~~~~~-~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~--~~~~l~~~~~~~g~~---------------------  768 (887)
                      .+++...-| +.|-.+..++++.+++..+|++.|.+.|.+..  ....+++...+.+..                     
T Consensus       321 ~~I~v~idrL~ek~~~~~I~av~~~~~~~p~~~L~~~gy~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (519)
T TIGR03713       321 TEIGFWIDGLSDEELQQILQQLLQYILKNPDYELKILTYNNDNDITQLLEDILEQINEEYNQDKNFFSLSEQDENQPILQ  400 (519)
T ss_pred             eEEEEEcCCCChHHHHHHHHHHHHHHhhCCCeEEEEEEecCchhHHHHHHHHHHHHHhhhchhhhccccchhhhhhhccc
Confidence            355555334 57999999999999999999999999886642  235666665555543                     


Q ss_pred             -------CCcEEEcCCCCcHHHHHhccCCcEEecCCCCCCchhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCcc
Q 002729          769 -------PDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEM  841 (887)
Q Consensus       769 -------~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~  841 (887)
                             .++|.|.|.....+....|..+.+++|+....|-.|.+||+..|||+|-.....+..         =|.++ +
T Consensus       401 ~~~~~~~~~~v~f~gy~~e~dl~~~~~~arl~id~s~~eg~~~~ieAiS~GiPqInyg~~~~V~---------d~~NG-~  470 (519)
T TIGR03713       401 TDEEQKEKERIAFTTLTNEEDLISALDKLRLIIDLSKEPDLYTQISGISAGIPQINKVETDYVE---------HNKNG-Y  470 (519)
T ss_pred             chhhcccccEEEEEecCCHHHHHHHHhhheEEEECCCCCChHHHHHHHHcCCCeeecCCceeeE---------cCCCc-E
Confidence                   179999998887788999999999999998888449999999999999322222221         17888 8


Q ss_pred             ccCCHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 002729          842 IVNSMKEYEERAVSLALDRQKLQALTNKLKS  872 (887)
Q Consensus       842 ~~~~~~~y~~~a~~l~~d~~~~~~~~~~~~~  872 (887)
                      +..+.++..+.++.+..|++..+++....-+
T Consensus       471 li~d~~~l~~al~~~L~~~~~wn~~~~~sy~  501 (519)
T TIGR03713       471 IIDDISELLKALDYYLDNLKNWNYSLAYSIK  501 (519)
T ss_pred             EeCCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            8899999999999999999888887765443

This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.

>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional

Probab=98.29  E-value=2.6e-06  Score=100.69  Aligned_cols=154  Identities=14%  Similarity=0.120  Sum_probs=104.3

Q ss_pred             CCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCC----ceEEEecCCh----hhHHHHHHHHHHc--------CC-CCC-
Q 002729          711 EDKFIFACFNQL--YKMDPEIFNTWCNILRRVPN----SALWLLRFPA----AGEMRLRAYAVAQ--------GV-QPD-  770 (887)
Q Consensus       711 ~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~----~~l~~~~~~~----~~~~~l~~~~~~~--------g~-~~~-  770 (887)
                      .+..++++..|+  .|..+..++++.++++..|+    .+|++++.+.    ...+.+++.+.+.        |. +-. 
T Consensus       263 ~~~~~il~VgRl~~~Kgi~~~l~A~~~ll~~~p~~~~~v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~~~p  342 (726)
T PRK14501        263 RGRKIILSIDRLDYTKGIPRRLLAFERFLEKNPEWRGKVRLVQVAVPSRTGVPQYQEMKREIDELVGRINGEFGTVDWTP  342 (726)
T ss_pred             CCCEEEEEecCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHhhcCCCCcce
Confidence            355788888887  49999999999999999996    5788876331    1123455544433        22 111 


Q ss_pred             cEEEcCCCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHh-----CCceeeecccchhhhhHHHHHHhcCCCCcccc-
Q 002729          771 QIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWA-----GLPMITLPLEKMATRVAGSLCLATGLGEEMIV-  843 (887)
Q Consensus       771 r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~-----gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~-  843 (887)
                      .+.|.+.++.++..++|+.+|||+-|+-..| |++++|||+|     |+||++-......+      |.. |+   +|- 
T Consensus       343 v~~~~~~~~~~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~------l~~-~l---lv~P  412 (726)
T PRK14501        343 IHYFYRSLPFEELVALYRAADVALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAAE------LAE-AL---LVNP  412 (726)
T ss_pred             EEEEeCCCCHHHHHHHHHhccEEEecccccccCcccceEEEEcCCCCceEEEecccchhHH------hCc-Ce---EECC
Confidence            2457788999999999999999999988888 9999999999     55666433222221      110 22   333 


Q ss_pred             CCHHHHHHHHHHHhcCH-HHHHHHHHHHHhhc
Q 002729          844 NSMKEYEERAVSLALDR-QKLQALTNKLKSVR  874 (887)
Q Consensus       844 ~~~~~y~~~a~~l~~d~-~~~~~~~~~~~~~~  874 (887)
                      .|.++..+...++.+++ +.+....+++++..
T Consensus       413 ~d~~~la~ai~~~l~~~~~e~~~r~~~~~~~v  444 (726)
T PRK14501        413 NDIEGIAAAIKRALEMPEEEQRERMQAMQERL  444 (726)
T ss_pred             CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            68889888888887743 34433334555553

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=98.29  E-value=0.011  Score=64.33  Aligned_cols=394  Identities=11%  Similarity=0.011  Sum_probs=257.5

Q ss_pred             HHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH-HHcCCHHHHHHHHHHHH
Q 002729           16 KQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAW-KEKGDIDLAIRYYLVAI   94 (887)
Q Consensus        16 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~al   94 (887)
                      +.+...|...+...|.....|...|..-.+.|..+.+.+.|++.+..-|.+...|...-... ...|+.+.-...|+++.
T Consensus        62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~  141 (577)
T KOG1258|consen   62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAK  141 (577)
T ss_pred             HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence            55667788888889988889999999999999999999999999999998888777654443 35677888888899988


Q ss_pred             hcCCC---cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------CChHHHHHHHHHHHhh-
Q 002729           95 ELRPN---FADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQ------GLVQEAYSCYLEALRI-  164 (887)
Q Consensus        95 ~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~-  164 (887)
                      .....   ....|-.....-..++++..-..+|++.++.-......++..=.-+.++      -..+++.+.-....+. 
T Consensus       142 ~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~  221 (577)
T KOG1258|consen  142 SYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERS  221 (577)
T ss_pred             HhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhh
Confidence            76544   3457777777778889999999999999876433222222111111111      1122222211111100 


Q ss_pred             -CCC---hHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-----CC
Q 002729          165 -QPT---FAIAWSNLA-GLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT-----RP  234 (887)
Q Consensus       165 -~p~---~~~~~~~la-~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p  234 (887)
                       .+.   ..+.+..-+ .+-...+.++++...+.+.          ....-.++.......+.+..++..+..     .|
T Consensus       222 ~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~----------~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkp  291 (577)
T KOG1258|consen  222 KITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRI----------VSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKP  291 (577)
T ss_pred             hcccccChhHHHHHHHhhccCccchhhHHHHHHHHH----------HHHHHHHHHhhHhHHHHHHhhhhhccccccccCc
Confidence             000   000000000 0000001111111111111          111112333333444455555555542     12


Q ss_pred             C----hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCChHHHHh
Q 002729          235 N----AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL-QPSHPQALTN  309 (887)
Q Consensus       235 ~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~  309 (887)
                      .    ...|......-...|+++...-.+++++--.....+.|...+......|+.+-|...+..+.+. .|..+.+...
T Consensus       292 l~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~  371 (577)
T KOG1258|consen  292 LDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLL  371 (577)
T ss_pred             ccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHH
Confidence            1    4566777777788899999999999998777777889999999999999999998888888776 4566777777


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHH---HHHHHHhcCCCC----HHHHHHHHHHH
Q 002729          310 LGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAIS---CYNEVLRIDPLA----ADGLVNRGNTY  382 (887)
Q Consensus       310 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~---~~~~al~~~p~~----~~~~~~l~~~~  382 (887)
                      -+......|++..|..++++..+..|+...+-...+.....+|+.+.+..   ++..... ...+    ...+...++..
T Consensus       372 ~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~~~~~~i~~~l~~~~~r~~  450 (577)
T KOG1258|consen  372 EARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-GKENNGILEKLYVKFARLR  450 (577)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-cccCcchhHHHHHHHHHHH
Confidence            77778888899999999999998888888887777888888888888884   3332222 1122    22344444433


Q ss_pred             -HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCC
Q 002729          383 -KEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG  420 (887)
Q Consensus       383 -~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  420 (887)
                       .-.++.+.|...+.++++..|.+...+..+.......+
T Consensus       451 ~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~  489 (577)
T KOG1258|consen  451 YKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP  489 (577)
T ss_pred             HHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence             34578999999999999999999888888777766654

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=98.27  E-value=0.0084  Score=62.25  Aligned_cols=428  Identities=12%  Similarity=0.050  Sum_probs=248.3

Q ss_pred             hhHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002729            2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG   81 (887)
Q Consensus         2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g   81 (887)
                      ++++...+-.+|.+++-.+.++++....|--+.+|......-+..+++.....+|.+++...-+ ...|......-.+.+
T Consensus        45 ~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~-ldLW~lYl~YIRr~n  123 (660)
T COG5107          45 YFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN-LDLWMLYLEYIRRVN  123 (660)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-HhHHHHHHHHHHhhC
Confidence            5788899999999999999999999888888888888777778888999999999999875433 444433332222222


Q ss_pred             ---------CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH---------cCChHHHHHHHHHHHHhCCCCHH-HHHHHH
Q 002729           82 ---------DIDLAIRYYLVAIELRPNFADAWSNLASAYMR---------KGRLNEAAQCCRQALALNPLLVD-AHSNLG  142 (887)
Q Consensus        82 ---------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---------~g~~~~A~~~~~~~l~~~p~~~~-~~~~la  142 (887)
                               ..-+|.+..-...-.+|.....|...+..+..         +.+.+.-...|.+++...-.+.+ .|...-
T Consensus       124 ~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nleklW~dy~  203 (660)
T COG5107         124 NLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLEKLWKDYE  203 (660)
T ss_pred             cccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHH
Confidence                     12233333333333467767777776665532         34556667778888765433322 221111


Q ss_pred             H---------HHHHcC----ChHHHHHHHHHHHhh-------CCChHHH-----------HHHHHHHHHHc-----CC-H
Q 002729          143 N---------LMKAQG----LVQEAYSCYLEALRI-------QPTFAIA-----------WSNLAGLFMES-----GD-L  185 (887)
Q Consensus       143 ~---------~~~~~g----~~~~A~~~~~~al~~-------~p~~~~~-----------~~~la~~~~~~-----g~-~  185 (887)
                      .         .-.-.|    -|-.|...+++...+       +|-+...           |.+....-...     |+ .
T Consensus       204 ~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~  283 (660)
T COG5107         204 NFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPH  283 (660)
T ss_pred             HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcH
Confidence            1         111111    234555555554433       2222111           22222221111     11 1


Q ss_pred             H-HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHhhHHHHHHHcCChHHHHHHHHHHHh
Q 002729          186 N-RALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIG  264 (887)
Q Consensus       186 ~-~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~~l~  264 (887)
                      . .---.+++++...+-.+++|+.....+...++-+.|+...++.....|.  ....++..|...++-++...+|+++..
T Consensus       284 ~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps--L~~~lse~yel~nd~e~v~~~fdk~~q  361 (660)
T COG5107         284 EQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS--LTMFLSEYYELVNDEEAVYGCFDKCTQ  361 (660)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc--hheeHHHHHhhcccHHHHhhhHHHHHH
Confidence            1 1122344555555555666666666666666666666666666655554  333445555555555555555554432


Q ss_pred             cCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhH
Q 002729          265 CDPRFLEAYNNLGNALKD---VGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPF  341 (887)
Q Consensus       265 ~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  341 (887)
                      .    ..-.+..+..-..   .|+++...+++-+-..   .-.-++......-.+..-.+.|..+|-++-+..--...+|
T Consensus       362 ~----L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~---k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vy  434 (660)
T COG5107         362 D----LKRKYSMGESESASKVDNNFEYSKELLLKRIN---KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVY  434 (660)
T ss_pred             H----HHHHHhhhhhhhhccccCCccccHHHHHHHHh---hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCccee
Confidence            0    0000000100000   1222222222211111   2223444444555566667888888888876652323333


Q ss_pred             hhHH-HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHh
Q 002729          342 NNLA-VIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM--AEAHANLASAYKD  418 (887)
Q Consensus       342 ~~la-~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~  418 (887)
                      ..-| .-+...|++.-|-..|+-.+...|+++......-..+...++-+.|...|+++++.-...  ..+|..+...-.+
T Consensus       435 i~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~  514 (660)
T COG5107         435 IYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESM  514 (660)
T ss_pred             eeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHh
Confidence            2222 224567899999999999999999998888888888899999999999999887653332  5577777777788


Q ss_pred             CCCHHHHHHHHHHHHHcCCCC
Q 002729          419 SGHVEAAIKSYKQALLLRPDF  439 (887)
Q Consensus       419 ~g~~~~A~~~~~~al~~~p~~  439 (887)
                      -|+...+..+=++..+..|..
T Consensus       515 ~G~lN~v~sLe~rf~e~~pQe  535 (660)
T COG5107         515 VGSLNNVYSLEERFRELVPQE  535 (660)
T ss_pred             hcchHHHHhHHHHHHHHcCcH
Confidence            888888888888888887764

>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]

Probab=98.19  E-value=2.2e-05  Score=85.19  Aligned_cols=149  Identities=17%  Similarity=0.190  Sum_probs=111.1

Q ss_pred             EEEEecCC--CCCCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCc
Q 002729          714 FIFACFNQ--LYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD  791 (887)
Q Consensus       714 ~~~~~~~~--~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d  791 (887)
                      +.++++++  ..|..+.+++++..+....|+..++++|.++.....+...+...+. .+.|.|.|.++..+....+..+|
T Consensus       200 ~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~v~~~g~~~~~~~~~~~~~~~  278 (381)
T COG0438         200 FVVLYVGRLDPEKGLDLLIEAAAKLKKRGPDIKLVIVGDGPERREELEKLAKKLGL-EDNVKFLGYVPDEELAELLASAD  278 (381)
T ss_pred             eEEEEeeccChhcCHHHHHHHHHHhhhhcCCeEEEEEcCCCccHHHHHHHHHHhCC-CCcEEEecccCHHHHHHHHHhCC
Confidence            44555554  3589999999999988888878888888766533455667777776 68899999998777777888899


Q ss_pred             EEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCcccc-C-CHHHHHHHHHHHhcCHHHHHHHHH
Q 002729          792 LFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV-N-SMKEYEERAVSLALDRQKLQALTN  868 (887)
Q Consensus       792 ~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~-~-~~~~y~~~a~~l~~d~~~~~~~~~  868 (887)
                      +++-|+.+.| |.+++|||++|+|||+...+....-+..      |..+ ++. . +.++++.....+..+.+.++.+..
T Consensus       279 ~~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~~~~e~~~~------~~~g-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  351 (381)
T COG0438         279 VFVLPSLSEGFGLVLLEAMAAGTPVIASDVGGIPEVVED------GETG-LLVPPGDVEELADALEQLLEDPELREELGE  351 (381)
T ss_pred             EEEeccccccchHHHHHHHhcCCcEEECCCCChHHHhcC------CCce-EecCCCCHHHHHHHHHHHhcCHHHHHHHHH
Confidence            9999977655 8899999999999997766555543332      1123 333 2 579999999999998877777766


Q ss_pred             HH
Q 002729          869 KL  870 (887)
Q Consensus       869 ~~  870 (887)
                      ..
T Consensus       352 ~~  353 (381)
T COG0438         352 AA  353 (381)
T ss_pred             HH
Confidence            33

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.17  E-value=7.6e-05  Score=63.23  Aligned_cols=97  Identities=21%  Similarity=0.262  Sum_probs=77.7

Q ss_pred             HhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHH
Q 002729          308 TNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA----ADGLVNRGNTYK  383 (887)
Q Consensus       308 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~  383 (887)
                      -.-|.++.+.|+.+.|++.|.+++...|..+.+|++.+..+.-+|+.++|+..+++++++....    -.++...|.+|.
T Consensus        47 El~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR  126 (175)
T KOG4555|consen   47 ELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR  126 (175)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence            3446677778888888888888888888888888888888888888888888888888875433    347788888888


Q ss_pred             HcCCHHHHHHHHHHHHhcCCC
Q 002729          384 EIGRVTDAIQDYIRAITIRPT  404 (887)
Q Consensus       384 ~~g~~~~A~~~~~~al~~~p~  404 (887)
                      ..|+-+.|...|+.+-++...
T Consensus       127 l~g~dd~AR~DFe~AA~LGS~  147 (175)
T KOG4555|consen  127 LLGNDDAARADFEAAAQLGSK  147 (175)
T ss_pred             HhCchHHHHHhHHHHHHhCCH
Confidence            899999999888888777654

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.17  E-value=0.0021  Score=61.79  Aligned_cols=223  Identities=13%  Similarity=0.068  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-------------------HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002729           67 AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF-------------------ADAWSNLASAYMRKGRLNEAAQCCRQA  127 (887)
Q Consensus        67 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------------------~~~~~~la~~~~~~g~~~~A~~~~~~~  127 (887)
                      ...|...-.++.+....++|..-+...-+.+..+                   .......+.+....|+..+.+.-+...
T Consensus        69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L  148 (366)
T KOG2796|consen   69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKL  148 (366)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence            4556666666667777776666555544432110                   011222344444555555555444433


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHH
Q 002729          128 LALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK-PTFPDAY  206 (887)
Q Consensus       128 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~  206 (887)
                      ...       ...+..........+..++.+++-+      ..+.+.++.++.-.+.|.-....+.+.++.+ |..+...
T Consensus       149 ~~~-------V~~ii~~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~  215 (366)
T KOG2796|consen  149 KTV-------VSKILANLEQGLAEESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLL  215 (366)
T ss_pred             HHH-------HHHHHHHHHhccchhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHH
Confidence            211       1111122222222244444444433      2345566666666777777777777777766 4556666


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhhCC-------ChhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 002729          207 LNLGNVYKALGMPQEAIMCYQRAVQTRP-------NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNA  279 (887)
Q Consensus       207 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p-------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~  279 (887)
                      ..++.+-.+.|+.+.|..+|+..-+...       ......+.+.++.-.+++.+|...+.+++..+|.++.+.++.+.+
T Consensus       216 s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALc  295 (366)
T KOG2796|consen  216 SGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALC  295 (366)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHH
Confidence            6777777777777777777764433211       133444555566666666666666666666666666666666666


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCC
Q 002729          280 LKDVGRVDEAIQCYNQCLSLQPS  302 (887)
Q Consensus       280 ~~~~g~~~~A~~~~~~al~~~p~  302 (887)
                      +...|+...|++..+.+++..|.
T Consensus       296 llYlg~l~DAiK~~e~~~~~~P~  318 (366)
T KOG2796|consen  296 LLYLGKLKDALKQLEAMVQQDPR  318 (366)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCc
Confidence            66667777777766666666654

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.16  E-value=9.1e-06  Score=85.47  Aligned_cols=68  Identities=28%  Similarity=0.268  Sum_probs=48.9

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH---HHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 002729          368 DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEA---HANLASAYKDSGHVEAAIKSYKQALLL  435 (887)
Q Consensus       368 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~  435 (887)
                      +|+++..++++|.+|.++|++++|+..|+++++++|++.++   |+++|.+|..+|+.++|++.+++++++
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            56666777777777777777777777777777777776643   777777777777777777777777775

>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis

Probab=98.15  E-value=8.1e-06  Score=89.36  Aligned_cols=98  Identities=11%  Similarity=0.018  Sum_probs=64.1

Q ss_pred             EEEcCCC-C------cHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCccc-
Q 002729          772 IIFTDVA-M------KQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMI-  842 (887)
Q Consensus       772 ~~~~~~~-~------~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~-  842 (887)
                      |+|.|.. +      ..++.++++.||+++-|+.|.| |.|.+|||+||+||||-....|.+=+-. +...-+-.+-+| 
T Consensus       450 vif~P~~L~~~~~~~g~~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~E-~v~~~~~~gi~V~  528 (590)
T cd03793         450 VVFHPEFLSSTNPLLGLDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFMEE-HIEDPESYGIYIV  528 (590)
T ss_pred             EEEcccccCCCCCcCCcchHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhHH-HhccCCCceEEEe
Confidence            7887731 1      2356777899999999999999 9999999999999999887766321110 111000011033 


Q ss_pred             -------cCCHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002729          843 -------VNSMKEYEERAVSLALDRQKLQALTNKLK  871 (887)
Q Consensus       843 -------~~~~~~y~~~a~~l~~d~~~~~~~~~~~~  871 (887)
                             ..+.++..+...+++++ +.++++.++-+
T Consensus       529 ~r~~~~~~e~v~~La~~m~~~~~~-~~r~~~~~r~~  563 (590)
T cd03793         529 DRRFKSPDESVQQLTQYMYEFCQL-SRRQRIIQRNR  563 (590)
T ss_pred             cCCccchHHHHHHHHHHHHHHhCC-cHHHHHHHHHH
Confidence                   34677888888888754 45555555543

GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.12  E-value=0.00069  Score=64.40  Aligned_cols=193  Identities=15%  Similarity=0.148  Sum_probs=119.4

Q ss_pred             hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHh
Q 002729          236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFL------EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTN  309 (887)
Q Consensus       236 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  309 (887)
                      ...|..-+.+|...+++++|...+.++.+...++.      .++-..+.+..+...+.|+..+++++             
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKA-------------   97 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKA-------------   97 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-------------
Confidence            33444455566666777777777777664333322      23333444444555555555555554             


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHH
Q 002729          310 LGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA------ADGLVNRGNTYK  383 (887)
Q Consensus       310 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~  383 (887)
                       ...|.+.|..+-|-..++++-+.               .+..++++|+++|++++.+-..+      .+.+-..++++.
T Consensus        98 -s~lY~E~GspdtAAmaleKAak~---------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lV  161 (308)
T KOG1585|consen   98 -SELYVECGSPDTAAMALEKAAKA---------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLV  161 (308)
T ss_pred             -HHHHHHhCCcchHHHHHHHHHHH---------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhh
Confidence             34566666666666666655432               34567777788887776653221      235556677888


Q ss_pred             HcCCHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCChHHHHHHHHHhhhc
Q 002729          384 EIGRVTDAIQDYIRAITI------RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLL----RPDFPEATCNLLHTLQCV  453 (887)
Q Consensus       384 ~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~  453 (887)
                      +..++++|...+.+-...      .++....+.....+|.-..++..|..+|+...++    .|++..+..+|+..|-. 
T Consensus       162 rl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~-  240 (308)
T KOG1585|consen  162 RLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDE-  240 (308)
T ss_pred             hhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhcc-
Confidence            888888888777765432      3444556666677777788999999999987775    45666677777776654 


Q ss_pred             CChhh
Q 002729          454 CSWED  458 (887)
Q Consensus       454 g~~~~  458 (887)
                      |+.++
T Consensus       241 gD~E~  245 (308)
T KOG1585|consen  241 GDIEE  245 (308)
T ss_pred             CCHHH
Confidence            44443

>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]

Probab=98.12  E-value=2.9e-05  Score=77.07  Aligned_cols=153  Identities=13%  Similarity=0.099  Sum_probs=116.2

Q ss_pred             EEecCCCCCCCHHHHHHHHHHHhhcC------CceEEEecCC--hhhH---HHHHHHHHHcCCCCCcEEEcCCCCcHHHH
Q 002729          716 FACFNQLYKMDPEIFNTWCNILRRVP------NSALWLLRFP--AAGE---MRLRAYAVAQGVQPDQIIFTDVAMKQEHI  784 (887)
Q Consensus       716 ~~~~~~~~k~~~~~~~~~~~il~~~p------~~~l~~~~~~--~~~~---~~l~~~~~~~g~~~~r~~~~~~~~~~~~~  784 (887)
                      ...--|+.|+++ ++++++--+.+.|      +.+|.|+|.-  ..+.   ..|+..+.++.|+ +.|.|.--+|+++..
T Consensus       274 ~l~Q~RPEKnH~-~Lql~Al~~~~~pl~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L~i~-~~v~F~~N~Py~~lv  351 (465)
T KOG1387|consen  274 SLAQFRPEKNHK-ILQLFALYLKNEPLEASVSPIKLIIVGSCRNEEDEERVKSLKDLAEELKIP-KHVQFEKNVPYEKLV  351 (465)
T ss_pred             EEeecCcccccH-HHHHHHHHHhcCchhhccCCceEEEEeccCChhhHHHHHHHHHHHHhcCCc-cceEEEecCCHHHHH
Confidence            334446789999 8998887776554      4789998842  2222   4678899999994 669999999999999


Q ss_pred             HhccCCcEEecC-CCCCCchhHHHHHHhCC-ceeeecccchhhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhc-CHH
Q 002729          785 RRSSLADLFLDT-PLCNAHTTGTDILWAGL-PMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLAL-DRQ  861 (887)
Q Consensus       785 ~~~~~~d~~ld~-~~~~g~~t~~eal~~gv-Pvvt~~g~~~~~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l~~-d~~  861 (887)
                      .+++.|-+-+.+ .-..=|.+++|+|++|+ ||+--.|...-.-|...    .|-+-.+.+.|.+||++..++... |.+
T Consensus       352 ~lL~~a~iGvh~MwNEHFGIsVVEyMAAGlIpi~h~SgGP~lDIV~~~----~G~~tGFla~t~~EYaE~iLkIv~~~~~  427 (465)
T KOG1387|consen  352 ELLGKATIGVHTMWNEHFGISVVEYMAAGLIPIVHNSGGPLLDIVTPW----DGETTGFLAPTDEEYAEAILKIVKLNYD  427 (465)
T ss_pred             HHhccceeehhhhhhhhcchhHHHHHhcCceEEEeCCCCCceeeeecc----CCccceeecCChHHHHHHHHHHHHcCHH
Confidence            999999999999 55555999999999997 55544454443333322    243333889999999999999886 888


Q ss_pred             HHHHHHHHHHhhc
Q 002729          862 KLQALTNKLKSVR  874 (887)
Q Consensus       862 ~~~~~~~~~~~~~  874 (887)
                      .|..+|...|...
T Consensus       428 ~r~~~r~~AR~s~  440 (465)
T KOG1387|consen  428 ERNMMRRNARKSL  440 (465)
T ss_pred             HHHHHHHHHHHHH
Confidence            8999998888764

>TIGR02919 accessory Sec system glycosyltransferase GtfB

Probab=98.09  E-value=4.4e-05  Score=83.17  Aligned_cols=130  Identities=11%  Similarity=0.143  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCC-chhH
Q 002729          727 PEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTG  805 (887)
Q Consensus       727 ~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~  805 (887)
                      +..++.+.++.+++|+..|-| |.+......|.+. .+.   ++-+.+.|..+ .+.-..|..||++||+...+| +.++
T Consensus       291 s~~I~~i~~Lv~~lPd~~f~I-ga~te~s~kL~~L-~~y---~nvvly~~~~~-~~l~~ly~~~dlyLdin~~e~~~~al  364 (438)
T TIGR02919       291 SDQIEHLEEIVQALPDYHFHI-AALTEMSSKLMSL-DKY---DNVKLYPNITT-QKIQELYQTCDIYLDINHGNEILNAV  364 (438)
T ss_pred             HHHHHHHHHHHHhCCCcEEEE-EecCcccHHHHHH-Hhc---CCcEEECCcCh-HHHHHHHHhccEEEEccccccHHHHH
Confidence            999999999999999999998 6544434667666 555   34455555554 455678999999999999988 9999


Q ss_pred             HHHHHhCCceeeecccchhhhhHHHHHHhcCCCCccc-cCCHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002729          806 TDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMI-VNSMKEYEERAVSLALDRQKLQALTNKL  870 (887)
Q Consensus       806 ~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~-~~~~~~y~~~a~~l~~d~~~~~~~~~~~  870 (887)
                      .||+..|+|||+..-.........        ++.++ ..+.++++++.+.+..|++.++..-..-
T Consensus       365 ~eA~~~G~pI~afd~t~~~~~~i~--------~g~l~~~~~~~~m~~~i~~lL~d~~~~~~~~~~q  422 (438)
T TIGR02919       365 RRAFEYNLLILGFEETAHNRDFIA--------SENIFEHNEVDQLISKLKDLLNDPNQFRELLEQQ  422 (438)
T ss_pred             HHHHHcCCcEEEEecccCCccccc--------CCceecCCCHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            999999999998876544332211        12133 3789999999999999998655543333

Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.

>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase

Probab=98.05  E-value=6e-05  Score=82.70  Aligned_cols=158  Identities=18%  Similarity=0.147  Sum_probs=107.3

Q ss_pred             CCCCCCCCCCcEEEEecCCCC--CCCHHHHHHHHHHHhhcCC----ceEEEecCChh--------hHHHHHHHHHH----
Q 002729          703 KRSDYGLPEDKFIFACFNQLY--KMDPEIFNTWCNILRRVPN----SALWLLRFPAA--------GEMRLRAYAVA----  764 (887)
Q Consensus       703 ~r~~~~l~~~~~~~~~~~~~~--k~~~~~~~~~~~il~~~p~----~~l~~~~~~~~--------~~~~l~~~~~~----  764 (887)
                      .|+.+|   +..++.+..|+.  |..+.-++++.++|++.|+    .+|++++.+..        -+..+.+.+.+    
T Consensus       278 lr~~~~---~~kiIl~VDRLDy~KGI~~kl~Afe~~L~~~Pe~~gkv~Lvqi~~psr~~v~~y~~l~~~v~~~v~~IN~~  354 (487)
T TIGR02398       278 IRSELA---GVKLILSAERVDYTKGILEKLNAYERLLERRPELLGKVTLVTACVPAASGMTIYDELQGQIEQAVGRINGR  354 (487)
T ss_pred             HHHHcC---CceEEEEecccccccCHHHHHHHHHHHHHhCccccCceEEEEEeCCCcccchHHHHHHHHHHHHHHHHhhc
Confidence            455665   567888999984  9999999999999999996    58888875531        12233333322    


Q ss_pred             ---cCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCC----ceeeecccchhhhhHHHHHHhcC
Q 002729          765 ---QGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGL----PMITLPLEKMATRVAGSLCLATG  836 (887)
Q Consensus       765 ---~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gv----Pvvt~~g~~~~~r~~~~~l~~~g  836 (887)
                         .|. ..-+.|.+.++.++..++|+.+||+|.|.-..| ++++.|.++|+.    |+|.       |+.+++. ..  
T Consensus       355 fg~~~~-~pv~~~~~~v~~~el~alYr~ADV~lvT~lrDGmNLVa~Eyva~~~~~~GvLIL-------SefaGaa-~~--  423 (487)
T TIGR02398       355 FARIGW-TPLQFFTRSLPYEEVSAWFAMADVMWITPLRDGLNLVAKEYVAAQGLLDGVLVL-------SEFAGAA-VE--  423 (487)
T ss_pred             cCCCCC-ccEEEEcCCCCHHHHHHHHHhCCEEEECccccccCcchhhHHhhhcCCCCCEEE-------eccccch-hh--
Confidence               244 344677889999999999999999999998888 999999999988    6663       3333221 11  


Q ss_pred             CCCcccc--CCHHHHHHHHHHHhc-CHHHHHHHHHHHHhhc
Q 002729          837 LGEEMIV--NSMKEYEERAVSLAL-DRQKLQALTNKLKSVR  874 (887)
Q Consensus       837 ~~~~~~~--~~~~~y~~~a~~l~~-d~~~~~~~~~~~~~~~  874 (887)
                      +.+.+++  .|.++..+...+..+ ..+.+++--+++++..
T Consensus       424 l~~AllVNP~d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v  464 (487)
T TIGR02398       424 LKGALLTNPYDPVRMDETIYVALAMPKAEQQARMREMFDAV  464 (487)
T ss_pred             cCCCEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            1221333  677777666555555 4444444444555443

Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.04  E-value=6.9e-05  Score=79.01  Aligned_cols=68  Identities=21%  Similarity=0.178  Sum_probs=46.4

Q ss_pred             CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002729           29 NPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAEC---YGNMANAWKEKGDIDLAIRYYLVAIEL   96 (887)
Q Consensus        29 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~   96 (887)
                      +|+++.+++.+|.+|+.+|+|++|+..|+++++++|++.++   |+++|.+|..+|++++|+.+++++++.
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            45566667777777777777777777777777777766643   677777777777777777777776665

>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin

Probab=98.04  E-value=0.00085  Score=74.30  Aligned_cols=141  Identities=12%  Similarity=0.132  Sum_probs=90.6

Q ss_pred             CcEEEEecCCCC-CCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCC
Q 002729          712 DKFIFACFNQLY-KMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLA  790 (887)
Q Consensus       712 ~~~~~~~~~~~~-k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~  790 (887)
                      ..++|.++++.. +....+.+...+.+...+.-.++..|......         ..+ +++|.+.++++..++   +..|
T Consensus       239 ~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~g~~~~~~---------~~~-~~~v~~~~~~p~~~l---l~~~  305 (401)
T cd03784         239 RPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILSLGWGGLGA---------EDL-PDNVRVVDFVPHDWL---LPRC  305 (401)
T ss_pred             CCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEEccCccccc---------cCC-CCceEEeCCCCHHHH---hhhh
Confidence            456777887764 34456667666667666555555555433211         233 688999999876655   4669


Q ss_pred             cEEecCCCCCCchhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCccccC---CHHHHHHHHHHHhcCHHHHHHHH
Q 002729          791 DLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVN---SMKEYEERAVSLALDRQKLQALT  867 (887)
Q Consensus       791 d~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~~---~~~~y~~~a~~l~~d~~~~~~~~  867 (887)
                      |+++   ..+|..|+.|||++|||+|.++-..= .-.-+..+...|..- .+..   +.++..+...++.+| +.+++.+
T Consensus       306 d~~I---~hgG~~t~~eal~~GvP~v~~P~~~d-Q~~~a~~~~~~G~g~-~l~~~~~~~~~l~~al~~~l~~-~~~~~~~  379 (401)
T cd03784         306 AAVV---HHGGAGTTAAALRAGVPQLVVPFFGD-QPFWAARVAELGAGP-ALDPRELTAERLAAALRRLLDP-PSRRRAA  379 (401)
T ss_pred             heee---ecCCchhHHHHHHcCCCEEeeCCCCC-cHHHHHHHHHCCCCC-CCCcccCCHHHHHHHHHHHhCH-HHHHHHH
Confidence            9998   56667999999999999998865421 222344556667655 4432   577766666666665 4455555


Q ss_pred             HHHH
Q 002729          868 NKLK  871 (887)
Q Consensus       868 ~~~~  871 (887)
                      +..+
T Consensus       380 ~~~~  383 (401)
T cd03784         380 ALLR  383 (401)
T ss_pred             HHHH
Confidence            4444

Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=98.03  E-value=0.00077  Score=71.23  Aligned_cols=213  Identities=19%  Similarity=0.150  Sum_probs=103.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 002729            5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDID   84 (887)
Q Consensus         5 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~   84 (887)
                      +.....+..+.++-++.-.++++.+|+.+.+|..++.-  ......+|.++++++++......    .........|..-
T Consensus       174 IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~l----g~s~~~~~~g~~~  247 (539)
T PF04184_consen  174 IMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASL----GKSQFLQHHGHFW  247 (539)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhh----chhhhhhcccchh
Confidence            34456677788888888888888888888888777642  23345667777777665422110    0000000000000


Q ss_pred             HHHHHHHHHHhcCCC--cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 002729           85 LAIRYYLVAIELRPN--FADAWSNLASAYMRKGRLNEAAQCCRQALALNPL--LVDAHSNLGNLMKAQGLVQEAYSCYLE  160 (887)
Q Consensus        85 ~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~  160 (887)
                      +       .......  ...+...++.+..+.|+.++|++.++.+++..|.  +..++.++..++...+.+.++...+.+
T Consensus       248 e-------~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k  320 (539)
T PF04184_consen  248 E-------AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK  320 (539)
T ss_pred             h-------hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            0       0000000  1223345555666666666666666666555443  334555566666666666666555555


Q ss_pred             HHhh-CCChHHHHHHHHHHHHHc-CC---------------HHHHHHHHHHHHhhCCCCHHHHHHHH------HHHHHcC
Q 002729          161 ALRI-QPTFAIAWSNLAGLFMES-GD---------------LNRALQYYKEAVKLKPTFPDAYLNLG------NVYKALG  217 (887)
Q Consensus       161 al~~-~p~~~~~~~~la~~~~~~-g~---------------~~~A~~~~~~~l~~~~~~~~~~~~l~------~~~~~~g  217 (887)
                      .-+. -|+++...+..+.+..+. ++               -..|.+.+.++++.+|..+..+..+-      .-+.+.|
T Consensus       321 YdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilPPehilkrG  400 (539)
T PF04184_consen  321 YDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRG  400 (539)
T ss_pred             hccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCChHHhcCCC
Confidence            4322 233443333333322211 11               12355666677776666554333211      1233444


Q ss_pred             ChHHHHHHHHHHHh
Q 002729          218 MPQEAIMCYQRAVQ  231 (887)
Q Consensus       218 ~~~~A~~~~~~~~~  231 (887)
                      + .||+.+---.+.
T Consensus       401 D-SEAiaYAf~hL~  413 (539)
T PF04184_consen  401 D-SEAIAYAFFHLQ  413 (539)
T ss_pred             c-HHHHHHHHHHHH
Confidence            3 555555444444

The molecular function of this protein is uncertain.

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.03  E-value=3.4e-05  Score=70.21  Aligned_cols=91  Identities=25%  Similarity=0.302  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCC----
Q 002729          355 ADAISCYNEVLRIDPLAADGLVNRGNTYKEI----------GRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG----  420 (887)
Q Consensus       355 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----  420 (887)
                      +.|.+.++.....+|.+++.+++-|.++..+          ..+++|+.-|++++.++|+..++++.+|.+|...+    
T Consensus         8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~   87 (186)
T PF06552_consen    8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTP   87 (186)
T ss_dssp             HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcC
Confidence            4444444444445555555554444444433          12345555666666666666666666666665544    


Q ss_pred             -------CHHHHHHHHHHHHHcCCCChHHHHH
Q 002729          421 -------HVEAAIKSYKQALLLRPDFPEATCN  445 (887)
Q Consensus       421 -------~~~~A~~~~~~al~~~p~~~~~~~~  445 (887)
                             .+++|..+|+++.+.+|++......
T Consensus        88 d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ks  119 (186)
T PF06552_consen   88 DTAEAEEYFEKATEYFQKAVDEDPNNELYRKS  119 (186)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence                   2678888999999999998654433

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.00  E-value=8.7e-06  Score=65.94  Aligned_cols=64  Identities=31%  Similarity=0.507  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCC---cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 002729          372 ADGLVNRGNTYKEIGRVTDAIQDYIRAITI----RPT---MAEAHANLASAYKDSGHVEAAIKSYKQALLL  435 (887)
Q Consensus       372 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  435 (887)
                      ..++.++|.+|..+|++++|+.+|++++++    .++   ...++.++|.++...|++++|++++++++++
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            445666666666666666666666666644    111   2456777777777777777777777777664

...

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.99  E-value=0.0011  Score=70.72  Aligned_cols=107  Identities=18%  Similarity=0.218  Sum_probs=94.4

Q ss_pred             HHHHHHcCChhHHHHHHHHHHhccCCC-chhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 002729          311 GNIYMEWNMLPAAASYYKATLAVTTGL-SAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVT  389 (887)
Q Consensus       311 ~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~  389 (887)
                      |......|+...|.+++..++...|.. .....+++.++.+.|-..+|-.++.+++.++...+-.++.+|+.+..+.+.+
T Consensus       614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~  693 (886)
T KOG4507|consen  614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS  693 (886)
T ss_pred             cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence            333446899999999999999988864 3457899999999999999999999999999888899999999999999999


Q ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002729          390 DAIQDYIRAITIRPTMAEAHANLASAYK  417 (887)
Q Consensus       390 ~A~~~~~~al~~~p~~~~~~~~la~~~~  417 (887)
                      .|++.|+++++.+|++++.-..|-.+-+
T Consensus       694 ~a~~~~~~a~~~~~~~~~~~~~l~~i~c  721 (886)
T KOG4507|consen  694 GALEAFRQALKLTTKCPECENSLKLIRC  721 (886)
T ss_pred             HHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence            9999999999999999988777766554

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.98  E-value=0.00018  Score=74.26  Aligned_cols=136  Identities=15%  Similarity=0.068  Sum_probs=85.2

Q ss_pred             HHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHH-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 002729          306 ALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQ-QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKE  384 (887)
Q Consensus       306 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  384 (887)
                      +|..+.....+.+..+.|..+|.++.+..+....+|...|.+-.. .++.+.|.++|+.+++..|.+...|......+..
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~   82 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK   82 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            344444555555556666666666654444455556666666444 3444457777777777777777777777777777


Q ss_pred             cCCHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChH
Q 002729          385 IGRVTDAIQDYIRAITIRPTMA---EAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE  441 (887)
Q Consensus       385 ~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  441 (887)
                      .|+.+.|..+|++++..-|...   .+|......-.+.|+.+...++.+++.+..|++..
T Consensus        83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~  142 (280)
T PF05843_consen   83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS  142 (280)
T ss_dssp             TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred             hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence            7777777777777776655443   57777777888888888888888888888777443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.95  E-value=0.0042  Score=58.87  Aligned_cols=120  Identities=15%  Similarity=0.141  Sum_probs=52.6

Q ss_pred             CHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHc-CChHHHHHHHHHHHhhCCC-------hhHHhhHHHHHHHc
Q 002729          184 DLNRALQYYKEAVKLKPTFP------DAYLNLGNVYKAL-GMPQEAIMCYQRAVQTRPN-------AIAFGNLASTYYER  249 (887)
Q Consensus       184 ~~~~A~~~~~~~l~~~~~~~------~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p~-------~~~~~~la~~~~~~  249 (887)
                      +.++|...+++++++..+-.      ..+..++.+|... .++++|+..|+++-+....       ...+...+..-...
T Consensus        88 ~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~l  167 (288)
T KOG1586|consen   88 DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQL  167 (288)
T ss_pred             ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHH
Confidence            44555555554444332211      1223445555443 5566666666665543222       22233334444445


Q ss_pred             CChHHHHHHHHHHHhcCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 002729          250 GQADMAILYYKQAIGCDPRFL-------EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH  303 (887)
Q Consensus       250 g~~~~A~~~~~~~l~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  303 (887)
                      +++.+|+..|++.....-++.       +.++.-|.+++-..+.-.+...+++..+.+|..
T Consensus       168 eqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F  228 (288)
T KOG1586|consen  168 EQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF  228 (288)
T ss_pred             HHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence            555555555555543222221       112223333343344444444444444455543

>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]

Probab=97.94  E-value=0.0027  Score=69.26  Aligned_cols=141  Identities=16%  Similarity=0.194  Sum_probs=93.6

Q ss_pred             CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCc
Q 002729          712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD  791 (887)
Q Consensus       712 ~~~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d  791 (887)
                      ..++|.+++...-. .++++...+.+...|...++-.+.  . +.      ...++ ++.+...++.|..+.+   ..+|
T Consensus       237 ~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~--~-~~------~~~~~-p~n~~v~~~~p~~~~l---~~ad  302 (406)
T COG1819         237 RPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGG--A-RD------TLVNV-PDNVIVADYVPQLELL---PRAD  302 (406)
T ss_pred             CCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEeccc--c-cc------ccccC-CCceEEecCCCHHHHh---hhcC
Confidence            45677787777633 677776666676776444443332  1 10      12445 7889999998877654   7799


Q ss_pred             EEecCCCCCCchhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCcccc---CCHHHHHHHHHHHhcCHHHHHHHHH
Q 002729          792 LFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV---NSMKEYEERAVSLALDRQKLQALTN  868 (887)
Q Consensus       792 ~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~---~~~~~y~~~a~~l~~d~~~~~~~~~  868 (887)
                      +++   ..+|.+||.|||..|||+|.+++. +-.-.-+.-+..+|... .+-   .+++.-.+...++.+|+..+++.+.
T Consensus       303 ~vI---~hGG~gtt~eaL~~gvP~vv~P~~-~DQ~~nA~rve~~G~G~-~l~~~~l~~~~l~~av~~vL~~~~~~~~~~~  377 (406)
T COG1819         303 AVI---HHGGAGTTSEALYAGVPLVVIPDG-ADQPLNAERVEELGAGI-ALPFEELTEERLRAAVNEVLADDSYRRAAER  377 (406)
T ss_pred             EEE---ecCCcchHHHHHHcCCCEEEecCC-cchhHHHHHHHHcCCce-ecCcccCCHHHHHHHHHHHhcCHHHHHHHHH
Confidence            997   567799999999999999999876 22223344566678876 444   4566666666667777776666554


Q ss_pred             HHH
Q 002729          869 KLK  871 (887)
Q Consensus       869 ~~~  871 (887)
                      -.+
T Consensus       378 ~~~  380 (406)
T COG1819         378 LAE  380 (406)
T ss_pred             HHH
Confidence            443

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.94  E-value=0.0047  Score=58.52  Aligned_cols=85  Identities=14%  Similarity=0.214  Sum_probs=39.4

Q ss_pred             HcCChHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHc-CChHHHHHHHHHHHhhCCCh------HHHHHHHHHHH
Q 002729          113 RKGRLNEAAQCCRQALALNPLLVD------AHSNLGNLMKAQ-GLVQEAYSCYLEALRIQPTF------AIAWSNLAGLF  179 (887)
Q Consensus       113 ~~g~~~~A~~~~~~~l~~~p~~~~------~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~  179 (887)
                      +.++.++|..++++++++..+...      .+..+|.+|... .++++|+.+|+++-+.....      -..+...+...
T Consensus        85 kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ya  164 (288)
T KOG1586|consen   85 KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYA  164 (288)
T ss_pred             hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHH
Confidence            344777777777776654322111      223444444443 45555555555554432111      11222333334


Q ss_pred             HHcCCHHHHHHHHHHHHh
Q 002729          180 MESGDLNRALQYYKEAVK  197 (887)
Q Consensus       180 ~~~g~~~~A~~~~~~~l~  197 (887)
                      ...++|.+|+..|++...
T Consensus       165 a~leqY~~Ai~iyeqva~  182 (288)
T KOG1586|consen  165 AQLEQYSKAIDIYEQVAR  182 (288)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            444555555555555444

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.92  E-value=9.4e-05  Score=67.41  Aligned_cols=67  Identities=27%  Similarity=0.480  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002729           15 YKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHD----------YDMCIARNEEALRLEPRFAECYGNMANAWKEKG   81 (887)
Q Consensus        15 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g   81 (887)
                      |+.|.+.++.....+|.+.+.++.-|.++..+.+          +++|+.-|++++.++|+...+++.+|.+|...+
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A   83 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA   83 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence            6778888888888999999988888888776643          456666777777777777777777777776544

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.91  E-value=0.0004  Score=71.81  Aligned_cols=132  Identities=14%  Similarity=0.103  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002729           70 YGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMR-KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQ  148 (887)
Q Consensus        70 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~  148 (887)
                      |..+.....+.+..+.|..+|.++.+..+....+|...|.+.+. .++.+.|..+|+.+++..|.+...|......+...
T Consensus         4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~   83 (280)
T PF05843_consen    4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKL   83 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence            34444444444445555555555554333344455555555444 23333355555555555555555555555555555


Q ss_pred             CChHHHHHHHHHHHhhCCChH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002729          149 GLVQEAYSCYLEALRIQPTFA---IAWSNLAGLFMESGDLNRALQYYKEAVKLKPT  201 (887)
Q Consensus       149 g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~  201 (887)
                      ++.+.|..+|++++..-+...   ..|......-.+.|+.+...++.+++.+..|+
T Consensus        84 ~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~  139 (280)
T PF05843_consen   84 NDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE  139 (280)
T ss_dssp             T-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred             CcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence            555555555555554433332   34444444444445555555555555444444

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=97.91  E-value=0.043  Score=68.87  Aligned_cols=149  Identities=17%  Similarity=0.117  Sum_probs=98.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHh-hCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 002729            4 ALAHQMYKSGSYKQALEHSNSVYE-RNPLR--TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEK   80 (887)
Q Consensus         4 ~la~~~~~~g~~~~A~~~~~~~l~-~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~   80 (887)
                      .+|.+-++.+.|.+|+-.+++-.. ..+.+  ...+..+-.+|...++++........ ....|    ............
T Consensus      1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~-r~a~~----sl~~qil~~e~~ 1462 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR-RFADP----SLYQQILEHEAS 1462 (2382)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH-hhcCc----cHHHHHHHHHhh
Confidence            467888899999999999998411 11111  23344455588888888877666653 11222    244555667788


Q ss_pred             CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHcCChHHHHHH
Q 002729           81 GDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLG-NLMKAQGLVQEAYSC  157 (887)
Q Consensus        81 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la-~~~~~~g~~~~A~~~  157 (887)
                      |++..|..+|+++++.+|+....+...-......|.++..+...+-.....++..+-++.++ .+..+.++++.-...
T Consensus      1463 g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred             ccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence            99999999999999999988877777777778888888887766666555444444444333 233555665554444

>PLN03004 UDP-glycosyltransferase

Probab=97.91  E-value=0.00027  Score=77.62  Aligned_cols=145  Identities=17%  Similarity=0.222  Sum_probs=95.9

Q ss_pred             CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCChh-------hHHHHHHHHHHcCCCCCcEEEcCCCCcHHHH
Q 002729          712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA-------GEMRLRAYAVAQGVQPDQIIFTDVAMKQEHI  784 (887)
Q Consensus       712 ~~~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~-------~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~  784 (887)
                      ..++|.||+....+.++.++-.+.-|...+...||.+..+..       ....+-+-|.+. +....+++.++.|..+.|
T Consensus       270 ~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~~~~~~~~~~~~lp~gf~er-~~~~g~~v~~W~PQ~~iL  348 (451)
T PLN03004        270 KSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPELEKTELDLKSLLPEGFLSR-TEDKGMVVKSWAPQVPVL  348 (451)
T ss_pred             CceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCccccccccchhhhCChHHHHh-ccCCcEEEEeeCCHHHHh
Confidence            459999999999999999999999999999999999874311       011122222222 223558889999988876


Q ss_pred             HhccCCcE--EecCCCCCCchhHHHHHHhCCceeeecccchhhhhHHHHHH-hcCCCCcccc------CCHHHHHHHHHH
Q 002729          785 RRSSLADL--FLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCL-ATGLGEEMIV------NSMKEYEERAVS  855 (887)
Q Consensus       785 ~~~~~~d~--~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~-~~g~~~~~~~------~~~~~y~~~a~~  855 (887)
                         ...+|  |+   ..+|-+|++||+++|||+|+++--.= ...-+..+. ..|..- -+.      -+.++..+...+
T Consensus       349 ---~H~~v~~Fv---TH~G~nS~lEal~~GVP~v~~P~~~D-Q~~na~~~~~~~g~g~-~l~~~~~~~~~~e~l~~av~~  420 (451)
T PLN03004        349 ---NHKAVGGFV---THCGWNSILEAVCAGVPMVAWPLYAE-QRFNRVMIVDEIKIAI-SMNESETGFVSSTEVEKRVQE  420 (451)
T ss_pred             ---CCCccceEe---ccCcchHHHHHHHcCCCEEecccccc-chhhHHHHHHHhCceE-EecCCcCCccCHHHHHHHHHH
Confidence               44555  75   57788999999999999999874211 111122332 234443 221      266777776667


Q ss_pred             HhcCHHHHHH
Q 002729          856 LALDRQKLQA  865 (887)
Q Consensus       856 l~~d~~~~~~  865 (887)
                      +..|+..+++
T Consensus       421 vm~~~~~r~~  430 (451)
T PLN03004        421 IIGECPVRER  430 (451)
T ss_pred             HhcCHHHHHH
Confidence            7777554443

>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing

Probab=97.90  E-value=0.00032  Score=75.64  Aligned_cols=315  Identities=11%  Similarity=0.020  Sum_probs=156.2

Q ss_pred             eeeeecCCCCCChhHHhhhHHhhcCCC-CCcEEEEEecCCCCChH----HHHHHHhhc----CceEECCC---CC-----
Q 002729          538 RVGYVSSDFGNHPLSHLMGSVFGMHNK-ENVEVFCYALSPNDGTE----WRQRTQSEA----EHFVDVSA---MS-----  600 (887)
Q Consensus       538 riGyvs~d~~~h~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~----~~~~~~~~~----~~~~~~~~---~~-----  600 (887)
                      ||.+|.+   .-|-.-.+.+++..+.+ ..||+.+..+|+..++.    ........+    +....+..   -+     
T Consensus         2 ki~~v~G---tRpe~iklapv~~~l~~~~~~~~~lv~tGqH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (365)
T TIGR03568         2 KICVVTG---TRADYGLLRPLLKALQDDPDLELQLIVTGMHLSPEYGNTVNEIEKDGFDIDEKIEILLDSDSNAGMAKSM   78 (365)
T ss_pred             eEEEEEe---cChhHHHHHHHHHHHhcCCCCcEEEEEeCCCCChhhccHHHHHHHcCCCCCCccccccCCCCCCCHHHHH
Confidence            4555553   34544567788887776 46999998899876543    222222222    22222321   11     


Q ss_pred             ---HHHHHHHHHhCCCeEEEecC-CcCCCCchhhhhcCCCceEEeccccCCCCCC-CcccEE----EecCccCCCCcCC-
Q 002729          601 ---SDMIAKLINEDKIQILINLN-GYTKGARNEIFAMQPAPIQVSYMGFPGTTGA-SYIDYL----VTDEFVSPLRYAH-  670 (887)
Q Consensus       601 ---~~~~~~~i~~~~~dil~~~~-~~~~~~~~~~~~~r~apvq~~~~g~~~t~g~-~~~d~~----~~d~~~~p~~~~~-  670 (887)
                         ..++.+.+.+.++|+++-.. +.+.-.-.-.....--||-=.--|- -|.|. ..+.-.    +++-.+.|.+... 
T Consensus        79 ~~~~~~~~~~~~~~~Pd~vlv~GD~~~~la~alaA~~~~IPv~HveaG~-rs~~~~eE~~r~~i~~la~l~f~~t~~~~~  157 (365)
T TIGR03568        79 GLTIIGFSDAFERLKPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHGGE-VTEGAIDESIRHAITKLSHLHFVATEEYRQ  157 (365)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHhCCcEEEEECCc-cCCCCchHHHHHHHHHHHhhccCCCHHHHH
Confidence               15667788899999886433 2211111112222345665221121 11111 111111    2233334433211 


Q ss_pred             ------CCccceeecCCccccCCCccccccCCCCCCCCCCCCCCCCC-CcEEEEecCCCC--CCC-H-HHHHHHHHHHhh
Q 002729          671 ------IYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPE-DKFIFACFNQLY--KMD-P-EIFNTWCNILRR  739 (887)
Q Consensus       671 ------~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~-~~~~~~~~~~~~--k~~-~-~~~~~~~~il~~  739 (887)
                            .-.++++..-+..+..-.     ...........+++|++. ..+++..+++..  |.. . .+..+...+...
T Consensus       158 ~L~~eg~~~~~i~~tG~~~iD~l~-----~~~~~~~~~~~~~lgl~~~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~  232 (365)
T TIGR03568       158 RVIQMGEDPDRVFNVGSPGLDNIL-----SLDLLSKEELEEKLGIDLDKPYALVTFHPVTLEKESAEEQIKELLKALDEL  232 (365)
T ss_pred             HHHHcCCCCCcEEEECCcHHHHHH-----hhhccCHHHHHHHhCCCCCCCEEEEEeCCCcccccCchHHHHHHHHHHHHh
Confidence                  112233322211110000     000011123456678863 367777777764  443 2 233333333222


Q ss_pred             cCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCCchhHHHHHHhCCceeeec
Q 002729          740 VPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLP  819 (887)
Q Consensus       740 ~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~  819 (887)
                      ..+..+++...++. ...+.+.+.+..-..++|.+.+.+++.+++.++..||+++    -+++..+-||..+|+|||++.
T Consensus       233 ~~~~~vi~P~~~p~-~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~Ll~~a~~vi----tdSSggi~EA~~lg~Pvv~l~  307 (365)
T TIGR03568       233 NKNYIFTYPNADAG-SRIINEAIEEYVNEHPNFRLFKSLGQERYLSLLKNADAVI----GNSSSGIIEAPSFGVPTINIG  307 (365)
T ss_pred             ccCCEEEEeCCCCC-chHHHHHHHHHhcCCCCEEEECCCChHHHHHHHHhCCEEE----EcChhHHHhhhhcCCCEEeec
Confidence            22332322222232 2223333333321146799999999999999999999999    444455589999999999885


Q ss_pred             ccchhhhhHHHHHHhcCCCCcc-ccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCCc
Q 002729          820 LEKMATRVAGSLCLATGLGEEM-IVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDT  882 (887)
Q Consensus       820 g~~~~~r~~~~~l~~~g~~~~~-~~~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~~~~~~l~d~  882 (887)
                       +...+|..       |-+- + |-.+.++.++.+.+ +.|++.++.+    ..  ...|..|+
T Consensus       308 -~R~e~~~~-------g~nv-l~vg~~~~~I~~a~~~-~~~~~~~~~~----~~--~~~pygdg  355 (365)
T TIGR03568       308 -TRQKGRLR-------ADSV-IDVDPDKEEIVKAIEK-LLDPAFKKSL----KN--VKNPYGDG  355 (365)
T ss_pred             -CCchhhhh-------cCeE-EEeCCCHHHHHHHHHH-HhChHHHHHH----hh--CCCCCCCC
Confidence             34444432       3333 3 55688988887777 4555433332    21  24667776

This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.90  E-value=0.0012  Score=65.71  Aligned_cols=157  Identities=14%  Similarity=0.072  Sum_probs=109.8

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhc-cCCC---chhHhhHHHHHHHcC
Q 002729          277 GNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAV-TTGL---SAPFNNLAVIYKQQG  352 (887)
Q Consensus       277 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~---~~~~~~la~~~~~~g  352 (887)
                      +.++...|++.+|...+++.++..|.+.-++..--.++...|+...-...+++.+.. +++.   ....-.++-.+.+.|
T Consensus       110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g  189 (491)
T KOG2610|consen  110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG  189 (491)
T ss_pred             HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence            344556677777777777777777777777666667777777777777777777765 4443   233445666777788


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHhCCCHHHHHHH
Q 002729          353 NYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM----AEAHANLASAYKDSGHVEAAIKS  428 (887)
Q Consensus       353 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~  428 (887)
                      -|++|.+.-++++++|+.+.-+....+.++...|+..++.+...+--..-...    ..-|...+.++...+.++.|+++
T Consensus       190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI  269 (491)
T KOG2610|consen  190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI  269 (491)
T ss_pred             cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence            88888888888888888888888888888888888888887776543321111    22355677788888888888888


Q ss_pred             HHHHH
Q 002729          429 YKQAL  433 (887)
Q Consensus       429 ~~~al  433 (887)
                      |.+-+
T Consensus       270 yD~ei  274 (491)
T KOG2610|consen  270 YDREI  274 (491)
T ss_pred             HHHHH
Confidence            87544

>TIGR01426 MGT glycosyltransferase, MGT family

Probab=97.89  E-value=0.00029  Score=77.63  Aligned_cols=139  Identities=14%  Similarity=0.258  Sum_probs=95.1

Q ss_pred             CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCc
Q 002729          712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD  791 (887)
Q Consensus       712 ~~~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d  791 (887)
                      ..++|.+++......+..++...+.+...|-..++..|.+.. ...+.      .+ +++|.+.++++..+.   +..+|
T Consensus       225 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~-~~~~~------~~-~~~v~~~~~~p~~~l---l~~~~  293 (392)
T TIGR01426       225 RPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVD-PADLG------EL-PPNVEVRQWVPQLEI---LKKAD  293 (392)
T ss_pred             CCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCC-hhHhc------cC-CCCeEEeCCCCHHHH---HhhCC
Confidence            447889999987777777776666777776545555554332 21221      23 578999999886544   56799


Q ss_pred             EEecCCCCCCchhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCcccc---CCHHHHHHHHHHHhcCHHHHHHH
Q 002729          792 LFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV---NSMKEYEERAVSLALDRQKLQAL  866 (887)
Q Consensus       792 ~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~---~~~~~y~~~a~~l~~d~~~~~~~  866 (887)
                      +++   ..+|..|++|||.+|+|+|.++...-.. .-+..+...|... .+-   -+.++..+...++..|++.++++
T Consensus       294 ~~I---~hgG~~t~~Eal~~G~P~v~~p~~~dq~-~~a~~l~~~g~g~-~l~~~~~~~~~l~~ai~~~l~~~~~~~~~  366 (392)
T TIGR01426       294 AFI---THGGMNSTMEALFNGVPMVAVPQGADQP-MTARRIAELGLGR-HLPPEEVTAEKLREAVLAVLSDPRYAERL  366 (392)
T ss_pred             EEE---ECCCchHHHHHHHhCCCEEecCCcccHH-HHHHHHHHCCCEE-EeccccCCHHHHHHHHHHHhcCHHHHHHH
Confidence            998   3566678999999999999987553333 3344566778765 443   25678788777888998766655

This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.87  E-value=1.3e-05  Score=64.91  Aligned_cols=64  Identities=33%  Similarity=0.628  Sum_probs=46.0

Q ss_pred             chhHhhHHHHHHHcCCHHHHHHHHHHHHhc----CC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002729          338 SAPFNNLAVIYKQQGNYADAISCYNEVLRI----DP---LAADGLVNRGNTYKEIGRVTDAIQDYIRAITI  401 (887)
Q Consensus       338 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  401 (887)
                      ..++.++|.+|..+|++++|+++|++++++    .+   ....++.++|.++...|++++|++++++++++
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            345667777777777777777777777754    11   22457788888888888888888888888764

...

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.85  E-value=0.0013  Score=65.34  Aligned_cols=156  Identities=15%  Similarity=0.016  Sum_probs=96.5

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-CCCh---HHHHHHHHHHHHHcC
Q 002729          108 ASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI-QPTF---AIAWSNLAGLFMESG  183 (887)
Q Consensus       108 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~~~g  183 (887)
                      +......|+..+|....++.++..|.+.-++..--..+...|+...-...+++++.. +++.   ..+.-.++-.+...|
T Consensus       110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g  189 (491)
T KOG2610|consen  110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG  189 (491)
T ss_pred             HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence            334445666666666666776666666666666666666666666666666666654 3333   333444555666667


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-----hhHHhhHHHHHHHcCChHHHHHH
Q 002729          184 DLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-----AIAFGNLASTYYERGQADMAILY  258 (887)
Q Consensus       184 ~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~la~~~~~~g~~~~A~~~  258 (887)
                      -|++|.+..++++++++.+.-+...++.++...|+.+++.+...+.-..-..     ...|...+..+.+.+.++.|+++
T Consensus       190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI  269 (491)
T KOG2610|consen  190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI  269 (491)
T ss_pred             cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence            7777777777777777776666666777777777777777666554332111     23344456666666777777777


Q ss_pred             HHHHH
Q 002729          259 YKQAI  263 (887)
Q Consensus       259 ~~~~l  263 (887)
                      |..-+
T Consensus       270 yD~ei  274 (491)
T KOG2610|consen  270 YDREI  274 (491)
T ss_pred             HHHHH
Confidence            76654

>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional

Probab=97.84  E-value=0.00012  Score=78.30  Aligned_cols=131  Identities=16%  Similarity=0.065  Sum_probs=91.0

Q ss_pred             EEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEE
Q 002729          714 FIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLF  793 (887)
Q Consensus       714 ~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~  793 (887)
                      ++++..+++.|...        +....|+.+|.+.|.++...          +. .++|+|.|+++.++....|+. |+.
T Consensus       170 ~~i~yaG~l~k~~~--------l~~~~~~~~l~i~G~g~~~~----------~~-~~~V~f~G~~~~eel~~~l~~-~~g  229 (333)
T PRK09814        170 KKINFAGNLEKSPF--------LKNWSQGIKLTVFGPNPEDL----------EN-SANISYKGWFDPEELPNELSK-GFG  229 (333)
T ss_pred             ceEEEecChhhchH--------HHhcCCCCeEEEECCCcccc----------cc-CCCeEEecCCCHHHHHHHHhc-CcC
Confidence            45666677776421        11135788999999876522          23 578999999999999888876 544


Q ss_pred             ecCC------------CCCCchhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHH
Q 002729          794 LDTP------------LCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQ  861 (887)
Q Consensus       794 ld~~------------~~~g~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l~~d~~  861 (887)
                      |=+.            .++...-+.++|++|+|||+.....+..-+..      +-.+ +++++.++..+....+  +++
T Consensus       230 Lv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~~~~~~~~V~~------~~~G-~~v~~~~el~~~l~~~--~~~  300 (333)
T PRK09814        230 LVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWSKAAIADFIVE------NGLG-FVVDSLEELPEIIDNI--TEE  300 (333)
T ss_pred             eEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECCCccHHHHHHh------CCce-EEeCCHHHHHHHHHhc--CHH
Confidence            4221            34455558899999999998777665554432      4445 6778989988887775  467


Q ss_pred             HHHHHHHHHHhh
Q 002729          862 KLQALTNKLKSV  873 (887)
Q Consensus       862 ~~~~~~~~~~~~  873 (887)
                      .+.+|+++.+..
T Consensus       301 ~~~~m~~n~~~~  312 (333)
T PRK09814        301 EYQEMVENVKKI  312 (333)
T ss_pred             HHHHHHHHHHHH
Confidence            788888888764

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.84  E-value=0.0043  Score=59.19  Aligned_cols=198  Identities=16%  Similarity=0.122  Sum_probs=98.9

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 002729           33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF------AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSN  106 (887)
Q Consensus        33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  106 (887)
                      ...+..-+.+|...+++++|...+.++.+-..++      +.++-..+........+.++..+|+++..           
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~-----------   99 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASE-----------   99 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----------
Confidence            3455566677777888888888888887554433      23444555555556666666666666544           


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC------hHHHHHHHHHHHH
Q 002729          107 LASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT------FAIAWSNLAGLFM  180 (887)
Q Consensus       107 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~  180 (887)
                         .|...|..+.|-..++++-+               ....-+.++|+++|++++.+-..      -.+.+...+.++.
T Consensus       100 ---lY~E~GspdtAAmaleKAak---------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lV  161 (308)
T KOG1585|consen  100 ---LYVECGSPDTAAMALEKAAK---------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLV  161 (308)
T ss_pred             ---HHHHhCCcchHHHHHHHHHH---------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhh
Confidence               33334444433333333321               12223344444444444443111      1223334455555


Q ss_pred             HcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC----C-hhHHhhHHHHHHHc
Q 002729          181 ESGDLNRALQYYKEAVKL------KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP----N-AIAFGNLASTYYER  249 (887)
Q Consensus       181 ~~g~~~~A~~~~~~~l~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p----~-~~~~~~la~~~~~~  249 (887)
                      +..++++|-..+.+-...      .++....+.....++....+|..|...++...+...    + ..+..+|...| ..
T Consensus       162 rl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~  240 (308)
T KOG1585|consen  162 RLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DE  240 (308)
T ss_pred             hhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-cc
Confidence            556666555544443221      222223444455555555666666666666544311    1 33344443333 45


Q ss_pred             CChHHHHHHHH
Q 002729          250 GQADMAILYYK  260 (887)
Q Consensus       250 g~~~~A~~~~~  260 (887)
                      |+.++..+.+.
T Consensus       241 gD~E~~~kvl~  251 (308)
T KOG1585|consen  241 GDIEEIKKVLS  251 (308)
T ss_pred             CCHHHHHHHHc
Confidence            56555555443

>TIGR03492 conserved hypothetical protein

Probab=97.84  E-value=0.0003  Score=76.74  Aligned_cols=141  Identities=14%  Similarity=0.049  Sum_probs=92.0

Q ss_pred             CCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCC-------------cEEEcCCCCcHHHHHhccCC
Q 002729          724 KMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPD-------------QIIFTDVAMKQEHIRRSSLA  790 (887)
Q Consensus       724 k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~-------------r~~~~~~~~~~~~~~~~~~~  790 (887)
                      +..|.++++..++.++ |+..+++.-.+....+.+++...+.|+...             .+.+.+.  ..+....|+.+
T Consensus       221 ~~lp~~l~al~~L~~~-~~~~~v~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~l~~A  297 (396)
T TIGR03492       221 RNLKLLLRALEALPDS-QPFVFLAAIVPSLSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLG--RGAFAEILHWA  297 (396)
T ss_pred             ccHHHHHHHHHHHhhC-CCeEEEEEeCCCCCHHHHHHHHHhcCceecCCccccchhhccCceEEEec--hHhHHHHHHhC
Confidence            4556888888777655 777666544233335667776766676421             2444432  24567789999


Q ss_pred             cEEecCCCCCCchhHHHHHHhCCceeeecccchhhhhHHHHHHhc----CCCCccccCCHHHHHHHHHHHhcCHHHHHHH
Q 002729          791 DLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLAT----GLGEEMIVNSMKEYEERAVSLALDRQKLQAL  866 (887)
Q Consensus       791 d~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~----g~~~~~~~~~~~~y~~~a~~l~~d~~~~~~~  866 (887)
                      |++|-.    +||+|.|++.+|+|+|..+++...  ..+.++...    |-.-.++-.+.+...+...++..|++.+.++
T Consensus       298 DlvI~r----SGt~T~E~a~lg~P~Ilip~~~~q--~na~~~~~~~~l~g~~~~l~~~~~~~l~~~l~~ll~d~~~~~~~  371 (396)
T TIGR03492       298 DLGIAM----AGTATEQAVGLGKPVIQLPGKGPQ--FTYGFAEAQSRLLGGSVFLASKNPEQAAQVVRQLLADPELLERC  371 (396)
T ss_pred             CEEEEC----cCHHHHHHHHhCCCEEEEeCCCCH--HHHHHHHhhHhhcCCEEecCCCCHHHHHHHHHHHHcCHHHHHHH
Confidence            999954    567779999999999999854321  233333331    4333122355788888888999999999888


Q ss_pred             HHHHHhh
Q 002729          867 TNKLKSV  873 (887)
Q Consensus       867 ~~~~~~~  873 (887)
                      ++..+..
T Consensus       372 ~~~~~~~  378 (396)
T TIGR03492       372 RRNGQER  378 (396)
T ss_pred             HHHHHHh
Confidence            8655443

This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.78  E-value=0.0002  Score=67.81  Aligned_cols=91  Identities=26%  Similarity=0.325  Sum_probs=70.4

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHH
Q 002729          345 AVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEA  424 (887)
Q Consensus       345 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  424 (887)
                      |..+...++|..|+..|.+++.++|..+..+.+.+.++.+.++++.+.....+++++.|+....++.+|........+++
T Consensus        17 gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e   96 (284)
T KOG4642|consen   17 GNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE   96 (284)
T ss_pred             cccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence            34455556777788888888888888777788888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHc
Q 002729          425 AIKSYKQALLL  435 (887)
Q Consensus       425 A~~~~~~al~~  435 (887)
                      |+..+.++..+
T Consensus        97 aI~~Lqra~sl  107 (284)
T KOG4642|consen   97 AIKVLQRAYSL  107 (284)
T ss_pred             HHHHHHHHHHH
Confidence            88888877554

>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG

Probab=97.76  E-value=0.00072  Score=69.97  Aligned_cols=232  Identities=14%  Similarity=0.106  Sum_probs=115.5

Q ss_pred             hcCCCCCcEEEEEecCCCCChHHHHHHHhhcCceEECCCCC-----HHHHHHHHHhCCCeEEEecCCcCCCCchhhhhcC
Q 002729          560 GMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMS-----SDMIAKLINEDKIQILINLNGYTKGARNEIFAMQ  634 (887)
Q Consensus       560 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~~r  634 (887)
                      +.+...+++|+.+......  ...+.++...-....+.+-+     ..++.+.|.+.++|++|--...+...-...+. .
T Consensus        25 ~~l~~~g~~v~f~~~~~~~--~~~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~vV~D~y~~~~~~~~~~k-~  101 (279)
T TIGR03590        25 RALHAQGAEVAFACKPLPG--DLIDLLLSAGFPVYELPDESSRYDDALELINLLEEEKFDILIVDHYGLDADWEKLIK-E  101 (279)
T ss_pred             HHHHHCCCEEEEEeCCCCH--HHHHHHHHcCCeEEEecCCCchhhhHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHH-H
Confidence            3343346788877754322  23445555544444444322     34688999999999998544333222112221 1


Q ss_pred             CCceEEeccccCCCCCCCcccEEEecCccCCCCcCCCCccceeecC-CccccCCCc--cccccCCCCCC-CCCCCCCCCC
Q 002729          635 PAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVP-HCYFVNDYK--QKNMDVLDPNC-QPKRSDYGLP  710 (887)
Q Consensus       635 ~apvq~~~~g~~~t~g~~~~d~~~~d~~~~p~~~~~~~~e~~~~lp-~~~~~~~~~--~~~~~~~~~~~-~~~r~~~~l~  710 (887)
                      ..| .+..+.-.+..+. ..|++|-.... . . ...|.+.   .| ++-....+.  ...+.+....+ ...|.     
T Consensus       102 ~~~-~l~~iDD~~~~~~-~~D~vin~~~~-~-~-~~~y~~~---~~~~~~~l~G~~Y~~lr~eF~~~~~~~~~~~-----  168 (279)
T TIGR03590       102 FGR-KILVIDDLADRPH-DCDLLLDQNLG-A-D-ASDYQGL---VPANCRLLLGPSYALLREEFYQLATANKRRK-----  168 (279)
T ss_pred             hCC-eEEEEecCCCCCc-CCCEEEeCCCC-c-C-HhHhccc---CcCCCeEEecchHHhhhHHHHHhhHhhhccc-----
Confidence            233 2233333322222 56887754321 1 1 1111110   22 111111110  00011110000 01111     


Q ss_pred             CCcEEEEecCC--CCCCCHHHHHHHHHHHhhcCCc-eEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhc
Q 002729          711 EDKFIFACFNQ--LYKMDPEIFNTWCNILRRVPNS-ALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS  787 (887)
Q Consensus       711 ~~~~~~~~~~~--~~k~~~~~~~~~~~il~~~p~~-~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~  787 (887)
                      +...++.+++.  ..+++..++++..++.   ++. ..++.|.+....+++++.....    .+|.+.+.++  +...++
T Consensus       169 ~~~~iLi~~GG~d~~~~~~~~l~~l~~~~---~~~~i~vv~G~~~~~~~~l~~~~~~~----~~i~~~~~~~--~m~~lm  239 (279)
T TIGR03590       169 PLRRVLVSFGGADPDNLTLKLLSALAESQ---INISITLVTGSSNPNLDELKKFAKEY----PNIILFIDVE--NMAELM  239 (279)
T ss_pred             ccCeEEEEeCCcCCcCHHHHHHHHHhccc---cCceEEEEECCCCcCHHHHHHHHHhC----CCEEEEeCHH--HHHHHH
Confidence            11234555553  3456677776665432   232 3345565433355676665543    3688877654  556778


Q ss_pred             cCCcEEecCCCCCCchhHHHHHHhCCceeeecc
Q 002729          788 SLADLFLDTPLCNAHTTGTDILWAGLPMITLPL  820 (887)
Q Consensus       788 ~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g  820 (887)
                      ..+|+++-    .||+|+.|++++|+|+|.++-
T Consensus       240 ~~aDl~Is----~~G~T~~E~~a~g~P~i~i~~  268 (279)
T TIGR03590       240 NEADLAIG----AAGSTSWERCCLGLPSLAICL  268 (279)
T ss_pred             HHCCEEEE----CCchHHHHHHHcCCCEEEEEe
Confidence            99999995    577999999999999997643

This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.

>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]

Probab=97.75  E-value=0.0016  Score=69.15  Aligned_cols=246  Identities=15%  Similarity=0.129  Sum_probs=143.0

Q ss_pred             HHHHHHHHHhCCCeEEEecCCcCCCCchhhhhcCCCceEEe----ccccCCCCCCCcccEEEecCccCCCCcCCCCccce
Q 002729          601 SDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVS----YMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKL  676 (887)
Q Consensus       601 ~~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~~r~apvq~~----~~g~~~t~g~~~~d~~~~d~~~~p~~~~~~~~e~~  676 (887)
                      -.++-+.|++.++|++|-..|+-.+.-.-......-|+-+.    ..|--+-...+..+.+.+. +..  .......++.
T Consensus        80 ~~~a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~~~G~ank~~~~~a~~V~~~-f~~--~~~~~~~~~~  156 (357)
T COG0707          80 VLQARKILKKLKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNAVPGLANKILSKFAKKVASA-FPK--LEAGVKPENV  156 (357)
T ss_pred             HHHHHHHHHHcCCCEEEecCCccccHHHHHHHhCCCCEEEEecCCCcchhHHHhHHhhceeeec-ccc--ccccCCCCce
Confidence            46788899999999999888877553222222233566543    2232222222333433331 110  0111111222


Q ss_pred             eecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEE---EEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCChh
Q 002729          677 VHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFI---FACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA  753 (887)
Q Consensus       677 ~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~---~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~  753 (887)
                      ...-      .|-  .+++..-.....|.....  +.++   +|.-+-..+++..+-+++....+   +..++...+...
T Consensus       157 ~~tG------~Pv--r~~~~~~~~~~~~~~~~~--~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~---~~~v~~~~G~~~  223 (357)
T COG0707         157 VVTG------IPV--RPEFEELPAAEVRKDGRL--DKKTILVTGGSQGAKALNDLVPEALAKLAN---RIQVIHQTGKND  223 (357)
T ss_pred             EEec------Ccc--cHHhhccchhhhhhhccC--CCcEEEEECCcchhHHHHHHHHHHHHHhhh---CeEEEEEcCcch
Confidence            2111      100  011111001112222212  2232   33322234566666665554443   344443333323


Q ss_pred             hHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCCchhHHHHHHhCCceeeecccch---hhhhHHH
Q 002729          754 GEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKM---ATRVAGS  830 (887)
Q Consensus       754 ~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~---~~r~~~~  830 (887)
                       .+.++....+.|+    +.+.+...  +...+|+.+|+++   .-.|++|..|.+++|+|+|-.+=+.-   ....-+-
T Consensus       224 -~~~~~~~~~~~~~----~~v~~f~~--dm~~~~~~ADLvI---sRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~  293 (357)
T COG0707         224 -LEELKSAYNELGV----VRVLPFID--DMAALLAAADLVI---SRAGALTIAELLALGVPAILVPYPPGADGHQEYNAK  293 (357)
T ss_pred             -HHHHHHHHhhcCc----EEEeeHHh--hHHHHHHhccEEE---eCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHH
Confidence             6677888888887    66666653  4677899999997   57789999999999999998876655   5556678


Q ss_pred             HHHhcCCCCccccC---CHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 002729          831 LCLATGLGEEMIVN---SMKEYEERAVSLALDRQKLQALTNKLKSV  873 (887)
Q Consensus       831 ~l~~~g~~~~~~~~---~~~~y~~~a~~l~~d~~~~~~~~~~~~~~  873 (887)
                      .|...|..- ++.+   +.+..++...++.++++.+++|+...+..
T Consensus       294 ~l~~~gaa~-~i~~~~lt~~~l~~~i~~l~~~~~~l~~m~~~a~~~  338 (357)
T COG0707         294 FLEKAGAAL-VIRQSELTPEKLAELILRLLSNPEKLKAMAENAKKL  338 (357)
T ss_pred             HHHhCCCEE-EeccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            888888876 4442   46799999999999999999999998865

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=97.74  E-value=0.17  Score=58.95  Aligned_cols=416  Identities=16%  Similarity=0.071  Sum_probs=240.4

Q ss_pred             HHHHHHHHHHHhcCCC----cHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCC--CcH----HHHHHHHHHHHHcCChH
Q 002729           50 DMCIARNEEALRLEPR----FAECYGNMANAWK-EKGDIDLAIRYYLVAIELRP--NFA----DAWSNLASAYMRKGRLN  118 (887)
Q Consensus        50 ~~A~~~~~~al~~~p~----~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p--~~~----~~~~~la~~~~~~g~~~  118 (887)
                      ..|+++++-+++..+-    .+.+++.+|.++. ...+++.|..++++++.+..  +..    .+...++.++.+.+...
T Consensus        38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~  117 (608)
T PF10345_consen   38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA  117 (608)
T ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence            5678888887743221    3678899999988 78999999999999987653  322    24556788888888777


Q ss_pred             HHHHHHHHHHHhCCC----CHHHHHHH--HHHHHHcCChHHHHHHHHHHHhhC--CChHHH--H--HHHHHHHHHcCCHH
Q 002729          119 EAAQCCRQALALNPL----LVDAHSNL--GNLMKAQGLVQEAYSCYLEALRIQ--PTFAIA--W--SNLAGLFMESGDLN  186 (887)
Q Consensus       119 ~A~~~~~~~l~~~p~----~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~--~--~~la~~~~~~g~~~  186 (887)
                       |...+++.++....    .....+.+  .......+++..|.+.++......  ..++.+  .  ...+.+....+..+
T Consensus       118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~  196 (608)
T PF10345_consen  118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD  196 (608)
T ss_pred             -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence             99999998876543    12222222  223333479999999999888764  344332  2  22345556667778


Q ss_pred             HHHHHHHHHHhhCC------C----CHHHHHHHHH--HHHHcCChHHHHHHHHHHHh---h---CC-------C------
Q 002729          187 RALQYYKEAVKLKP------T----FPDAYLNLGN--VYKALGMPQEAIMCYQRAVQ---T---RP-------N------  235 (887)
Q Consensus       187 ~A~~~~~~~l~~~~------~----~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~---~---~p-------~------  235 (887)
                      ++++.++++.....      +    ...++..+..  ++...|+++.+...++++-+   .   .+       +      
T Consensus       197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~  276 (608)
T PF10345_consen  197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLN  276 (608)
T ss_pred             hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEee
Confidence            88888877744221      1    1224444433  34556776666665544332   1   11       0      


Q ss_pred             ------------------------hhHHhhHHHHHHHcCChHHHHHHHHHHHhc----C---CCc----H----------
Q 002729          236 ------------------------AIAFGNLASTYYERGQADMAILYYKQAIGC----D---PRF----L----------  270 (887)
Q Consensus       236 ------------------------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~---p~~----~----------  270 (887)
                                              ...|..-+......+..++|.++++++++.    .   +..    .          
T Consensus       277 ~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~  356 (608)
T PF10345_consen  277 IGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWL  356 (608)
T ss_pred             cccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHH
Confidence                                    011122234445566666888888877632    1   110    0          


Q ss_pred             -----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CC------ChHHHHhHHHHHHHcCChhHHHHHHH--------
Q 002729          271 -----EAYNNLGNALKDVGRVDEAIQCYNQCLSLQ---PS------HPQALTNLGNIYMEWNMLPAAASYYK--------  328 (887)
Q Consensus       271 -----~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~------~~~~~~~l~~~~~~~g~~~~A~~~~~--------  328 (887)
                           ......+....-.+++.+|....+.+.+..   |.      .+..++..|..+...|+.+.|+..|.        
T Consensus       357 ~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~  436 (608)
T PF10345_consen  357 RYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCE  436 (608)
T ss_pred             HHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhh
Confidence                 123344566677799999999988877653   22      36678889999999999999999998        


Q ss_pred             HHHhccCCCch---hHhhHHHHHHHcCCHHH----HHHHHHHHHhcCCCCHHHHHHHHHH-----HH--HcCCHHHHHHH
Q 002729          329 ATLAVTTGLSA---PFNNLAVIYKQQGNYAD----AISCYNEVLRIDPLAADGLVNRGNT-----YK--EIGRVTDAIQD  394 (887)
Q Consensus       329 ~~~~~~~~~~~---~~~~la~~~~~~g~~~~----A~~~~~~al~~~p~~~~~~~~l~~~-----~~--~~g~~~~A~~~  394 (887)
                      .+....+.+..   +..++..++...+.-..    +.+.++..-....+.+..++..+.+     +.  ..-...++...
T Consensus       437 ~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~  516 (608)
T PF10345_consen  437 AANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRH  516 (608)
T ss_pred             hhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHH
Confidence            33333333222   23345555554444332    3444443322211222222222222     21  12234477777


Q ss_pred             HHHHHhcC-C---Cc---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---hHHHH------HHHHHhhhcCChhh
Q 002729          395 YIRAITIR-P---TM---AEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF---PEATC------NLLHTLQCVCSWED  458 (887)
Q Consensus       395 ~~~al~~~-p---~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~------~l~~~~~~~g~~~~  458 (887)
                      +..+++.. .   +.   .-++..++..+. .|+..+..+....+..+....   .....      -+...+...|+.++
T Consensus       517 l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~k  595 (608)
T PF10345_consen  517 LQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDK  595 (608)
T ss_pred             HHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHH
Confidence            77776654 1   11   223455555555 788888777776666654433   33322      22334666777777


Q ss_pred             HhHHHHHHH
Q 002729          459 RDRMFSEVE  467 (887)
Q Consensus       459 a~~~~~~~~  467 (887)
                      +.....+..
T Consensus       596 a~~~~~~~~  604 (608)
T PF10345_consen  596 AEEARQQLD  604 (608)
T ss_pred             HHHHHHHHH
Confidence            766655544

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=97.74  E-value=0.057  Score=56.68  Aligned_cols=128  Identities=9%  Similarity=0.028  Sum_probs=104.1

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 002729            7 HQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLA   86 (887)
Q Consensus         7 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A   86 (887)
                      ......|+...|-+-+..++...|.++......+.+...+|+|+.+...+..+-+.-.....+...+.......|++++|
T Consensus       297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a  376 (831)
T PRK15180        297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA  376 (831)
T ss_pred             HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence            45567899999998888999999999999999999999999999999888766555444455666677788889999999


Q ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 002729           87 IRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLL  134 (887)
Q Consensus        87 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~  134 (887)
                      ...-.-++...-.+++....-+-.....|-++++...+++.+.++|..
T Consensus       377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~  424 (831)
T PRK15180        377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET  424 (831)
T ss_pred             HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence            999888887766667776666666777888999999999999888653

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.74  E-value=0.0037  Score=66.23  Aligned_cols=144  Identities=19%  Similarity=0.151  Sum_probs=68.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChH
Q 002729           39 LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLN  118 (887)
Q Consensus        39 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  118 (887)
                      +.....+..+.++-++...++++++|+.+.+|..++.-  ......+|.++|+++++.....    ..........|..-
T Consensus       174 IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~----lg~s~~~~~~g~~~  247 (539)
T PF04184_consen  174 IMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEAS----LGKSQFLQHHGHFW  247 (539)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHh----hchhhhhhcccchh
Confidence            33444455556666666666666666666666555542  1223455555665555432110    00000000111100


Q ss_pred             HHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--hHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002729          119 EAAQCCRQALALNPL--LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT--FAIAWSNLAGLFMESGDLNRALQYYKE  194 (887)
Q Consensus       119 ~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~  194 (887)
                      +       .......  ...+...++.+..+.|+.++|++.++.+++.+|.  +..+..++..++...+.+.++..++.+
T Consensus       248 e-------~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k  320 (539)
T PF04184_consen  248 E-------AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK  320 (539)
T ss_pred             h-------hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            0       0000001  1223345666666666666666666666655443  344556666666666666666666655


Q ss_pred             H
Q 002729          195 A  195 (887)
Q Consensus       195 ~  195 (887)
                      .
T Consensus       321 Y  321 (539)
T PF04184_consen  321 Y  321 (539)
T ss_pred             h
Confidence            4

The molecular function of this protein is uncertain.

>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein

Probab=97.73  E-value=0.0005  Score=75.79  Aligned_cols=139  Identities=14%  Similarity=0.141  Sum_probs=92.3

Q ss_pred             CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCCh----hhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhc
Q 002729          712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPA----AGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS  787 (887)
Q Consensus       712 ~~~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~----~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~  787 (887)
                      +.++|.||+...+++.+.+.-.+.-|+..+...||.+..+.    .....|-.-|.+. + .+|....++.|..+.+. .
T Consensus       264 ~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~~~~~~lp~~f~er-~-~~~g~v~~w~PQ~~iL~-h  340 (451)
T PLN02410        264 NSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVRGSEWIESLPKEFSKI-I-SGRGYIVKWAPQKEVLS-H  340 (451)
T ss_pred             CcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCcccccchhhcCChhHHHh-c-cCCeEEEccCCHHHHhC-C
Confidence            55999999999999999999999999999999999887431    1111133333332 3 47777779999888774 3


Q ss_pred             cCCcEEecCCCCCCchhHHHHHHhCCceeeecc--cchhhhhHHHHHHhc-CCCCccc--cCCHHHHHHHHHHHhcCH
Q 002729          788 SLADLFLDTPLCNAHTTGTDILWAGLPMITLPL--EKMATRVAGSLCLAT-GLGEEMI--VNSMKEYEERAVSLALDR  860 (887)
Q Consensus       788 ~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g--~~~~~r~~~~~l~~~-g~~~~~~--~~~~~~y~~~a~~l~~d~  860 (887)
                      ..+..|+   ..+|-+|++||+++|||+|+++-  +.+.   -+..+... |+.- -+  .-+.++..+...++..|+
T Consensus       341 ~~v~~fv---tH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~---na~~~~~~~~~G~-~~~~~~~~~~v~~av~~lm~~~  411 (451)
T PLN02410        341 PAVGGFW---SHCGWNSTLESIGEGVPMICKPFSSDQKV---NARYLECVWKIGI-QVEGDLDRGAVERAVKRLMVEE  411 (451)
T ss_pred             CccCeee---ecCchhHHHHHHHcCCCEEeccccccCHH---HHHHHHHHhCeeE-EeCCcccHHHHHHHHHHHHcCC
Confidence            4466676   57788999999999999999873  3222   11222211 3321 11  125667655555666664

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=97.73  E-value=0.029  Score=66.60  Aligned_cols=100  Identities=16%  Similarity=0.159  Sum_probs=79.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCc---hhHHHHHHHHHHhc----C---CHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 002729            5 LAHQMYKSGSYKQALEHSNSVYERNPLR---TDNLLLLGAIYYQL----H---DYDMCIARNEEALRLEPRFAECYGNMA   74 (887)
Q Consensus         5 la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~la   74 (887)
                      .-.+++..+.|++|+..|+++-...|..   .++.+..|.....+    |   .+++|+..|++. ...|.-+--|...|
T Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  559 (932)
T PRK13184        481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKA  559 (932)
T ss_pred             CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHH
Confidence            3467888899999999999999888854   56778888776654    2   467788888764 34566677888999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 002729           75 NAWKEKGDIDLAIRYYLVAIELRPNFADAWS  105 (887)
Q Consensus        75 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  105 (887)
                      .+|.+.|++++-+++|.-+++..|+++..-.
T Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  590 (932)
T PRK13184        560 LVYQRLGEYNEEIKSLLLALKRYSQHPEISR  590 (932)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhcCCCCccHH
Confidence            9999999999999999999999988776443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.71  E-value=0.13  Score=56.62  Aligned_cols=241  Identities=17%  Similarity=0.050  Sum_probs=141.4

Q ss_pred             HhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002729           26 YERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR--------FAECYGNMANAWKEKGDIDLAIRYYLVAIELR   97 (887)
Q Consensus        26 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~   97 (887)
                      ++.+| ++..|..++......-.++.|...|-+.-...--        -..--...+.+-.--|++++|.+.|-.+-..+
T Consensus       686 iEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD  764 (1189)
T KOG2041|consen  686 IEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD  764 (1189)
T ss_pred             HhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh
Confidence            34455 6888888888888877777777777654221100        00011234444455678888888875543221


Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHH
Q 002729           98 PNFADAWSNLASAYMRKGRLNEAAQCCRQALALN--PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNL  175 (887)
Q Consensus        98 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  175 (887)
                              .-...+.+.|++-...++++..-.-.  .....++..+|..+.....+++|.++|.+.-.        .-++
T Consensus       765 --------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~  828 (1189)
T KOG2041|consen  765 --------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQ  828 (1189)
T ss_pred             --------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhH
Confidence                    22345566777766666554421111  11234788888888888888888888876432        2345


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHhhHHHHHHHcCChHHH
Q 002729          176 AGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMA  255 (887)
Q Consensus       176 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~la~~~~~~g~~~~A  255 (887)
                      +.+++...++++-..+    ...-|++...+-.++.++...|.-++|.+.|-+.-  .|..     ....+...++|.+|
T Consensus       829 ~ecly~le~f~~LE~l----a~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s--~pka-----Av~tCv~LnQW~~a  897 (1189)
T KOG2041|consen  829 IECLYRLELFGELEVL----ARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS--LPKA-----AVHTCVELNQWGEA  897 (1189)
T ss_pred             HHHHHHHHhhhhHHHH----HHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc--CcHH-----HHHHHHHHHHHHHH
Confidence            6667776666654433    33456777788888888888888888888776532  1221     12334556677777


Q ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002729          256 ILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQC  296 (887)
Q Consensus       256 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  296 (887)
                      .++.++..  -|.-.......+.-+...++..+|++..+++
T Consensus       898 velaq~~~--l~qv~tliak~aaqll~~~~~~eaIe~~Rka  936 (1189)
T KOG2041|consen  898 VELAQRFQ--LPQVQTLIAKQAAQLLADANHMEAIEKDRKA  936 (1189)
T ss_pred             HHHHHhcc--chhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence            77665432  1222222223334445556666666666654

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.70  E-value=0.016  Score=64.45  Aligned_cols=118  Identities=14%  Similarity=0.043  Sum_probs=74.3

Q ss_pred             CChHHHHHHHHHHHhhCCC-hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHH
Q 002729          217 GMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRF----LEAYNNLGNALKDVGRVDEAIQ  291 (887)
Q Consensus       217 g~~~~A~~~~~~~~~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~  291 (887)
                      ...+.|.++++...+..|+ .......|.++...|+.++|++.+++++.....-    .-.++.++.++.-+.+|++|.+
T Consensus       247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~  326 (468)
T PF10300_consen  247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE  326 (468)
T ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence            3456667777777777776 4455566667777777777777777666322211    1246667777777777777777


Q ss_pred             HHHHHHhcCCCChH-HHHhHHHHHHHcCCh-------hHHHHHHHHHHhcc
Q 002729          292 CYNQCLSLQPSHPQ-ALTNLGNIYMEWNML-------PAAASYYKATLAVT  334 (887)
Q Consensus       292 ~~~~al~~~p~~~~-~~~~l~~~~~~~g~~-------~~A~~~~~~~~~~~  334 (887)
                      ++.+..+.+.-+.. ..+..|.++...++.       ++|.++|.++-...
T Consensus       327 ~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~  377 (468)
T PF10300_consen  327 YFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK  377 (468)
T ss_pred             HHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence            77777765544332 334556666677776       77777777665543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PLN02670 transferase, transferring glycosyl groups

Probab=97.69  E-value=0.00053  Score=75.69  Aligned_cols=140  Identities=14%  Similarity=0.101  Sum_probs=93.0

Q ss_pred             CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCChhh----HHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhc
Q 002729          712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAG----EMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS  787 (887)
Q Consensus       712 ~~~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~----~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~  787 (887)
                      ..++|.||+....++++.++-.+.-|...|...||.+..+...    ...+-+-|.+. +....+++.++.|..+.|. .
T Consensus       278 ~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~lp~~f~~~-~~~rG~vv~~W~PQ~~IL~-H  355 (472)
T PLN02670        278 NSVVYVALGTEASLRREEVTELALGLEKSETPFFWVLRNEPGTTQNALEMLPDGFEER-VKGRGMIHVGWVPQVKILS-H  355 (472)
T ss_pred             CceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCcccccchhhcCChHHHHh-ccCCCeEEeCcCCHHHHhc-C
Confidence            4599999999999999999999999999999999988743211    11222222222 1112278889999888774 2


Q ss_pred             cCCcEEecCCCCCCchhHHHHHHhCCceeeec--ccchhhhhHHHHHHhcCCCCcccc-------CCHHHHHHHHHHHhc
Q 002729          788 SLADLFLDTPLCNAHTTGTDILWAGLPMITLP--LEKMATRVAGSLCLATGLGEEMIV-------NSMKEYEERAVSLAL  858 (887)
Q Consensus       788 ~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~--g~~~~~r~~~~~l~~~g~~~~~~~-------~~~~~y~~~a~~l~~  858 (887)
                      ..+..|+   ...|-+|++||+++|||+|+++  ++.+.   -+..+...|+.- -+.       -+.++..+...++..
T Consensus       356 ~~v~~Fv---tHcGwnS~~Eai~~GVP~l~~P~~~DQ~~---Na~~v~~~g~Gv-~l~~~~~~~~~~~e~i~~av~~vm~  428 (472)
T PLN02670        356 ESVGGFL---THCGWNSVVEGLGFGRVLILFPVLNEQGL---NTRLLHGKKLGL-EVPRDERDGSFTSDSVAESVRLAMV  428 (472)
T ss_pred             cccceee---ecCCcchHHHHHHcCCCEEeCcchhccHH---HHHHHHHcCeeE-EeeccccCCcCcHHHHHHHHHHHhc
Confidence            4455575   5788999999999999999997  33322   222334456543 231       256676666666666


Q ss_pred             CH
Q 002729          859 DR  860 (887)
Q Consensus       859 d~  860 (887)
                      |+
T Consensus       429 ~~  430 (472)
T PLN02670        429 DD  430 (472)
T ss_pred             Cc
Confidence            64

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.69  E-value=0.00031  Score=66.53  Aligned_cols=92  Identities=22%  Similarity=0.241  Sum_probs=57.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChH
Q 002729           39 LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLN  118 (887)
Q Consensus        39 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  118 (887)
                      -|..++....|..|+..|.+++.++|..+..|.+.+.++++..+++.+.....++++++|+.+...+.+|.+......++
T Consensus        16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~   95 (284)
T KOG4642|consen   16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD   95 (284)
T ss_pred             ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence            34555555666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHh
Q 002729          119 EAAQCCRQALAL  130 (887)
Q Consensus       119 ~A~~~~~~~l~~  130 (887)
                      +|+..+.++..+
T Consensus        96 eaI~~Lqra~sl  107 (284)
T KOG4642|consen   96 EAIKVLQRAYSL  107 (284)
T ss_pred             HHHHHHHHHHHH
Confidence            666666666443

>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]

Probab=97.69  E-value=0.00095  Score=69.74  Aligned_cols=256  Identities=14%  Similarity=0.091  Sum_probs=156.1

Q ss_pred             HHHHHHHHHhCCCeEEEecCCcCCCCchhhhhcCCCceEEe-----------c--cccCCCCCCCcccEEEecCccCCCC
Q 002729          601 SDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVS-----------Y--MGFPGTTGASYIDYLVTDEFVSPLR  667 (887)
Q Consensus       601 ~~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~~r~apvq~~-----------~--~g~~~t~g~~~~d~~~~d~~~~p~~  667 (887)
                      ...+-+-++.-++|++|-..+--=.|.+.-..++-+|+.+.           |  ++...-.-+..+|.+++-.-.    
T Consensus       112 ~~~v~rFl~~~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaRLS~rS~~~y~k~~~~~~~~~~~i~li~aQse~----  187 (419)
T COG1519         112 PIAVRRFLRKWRPKLLIIMETELWPNLINELKRRGIPLVLVNARLSDRSFARYAKLKFLARLLFKNIDLILAQSEE----  187 (419)
T ss_pred             hHHHHHHHHhcCCCEEEEEeccccHHHHHHHHHcCCCEEEEeeeechhhhHHHHHHHHHHHHHHHhcceeeecCHH----
Confidence            55678888899999999887666666666667788888764           1  222222234667888773211    


Q ss_pred             cCCCCccceeecCCcc--ccCCCccccccCCCCC---CCCCCCCCCCCCCcEEEEecCCCCCCCHH-HHHHHHHHHhhcC
Q 002729          668 YAHIYSEKLVHVPHCY--FVNDYKQKNMDVLDPN---CQPKRSDYGLPEDKFIFACFNQLYKMDPE-IFNTWCNILRRVP  741 (887)
Q Consensus       668 ~~~~~~e~~~~lp~~~--~~~~~~~~~~~~~~~~---~~~~r~~~~l~~~~~~~~~~~~~~k~~~~-~~~~~~~il~~~p  741 (887)
                          ..|+...|=-.-  .+..-+....+ ++..   ....|..++.+...++++|.   ..--++ .++++.+++++.|
T Consensus       188 ----D~~Rf~~LGa~~v~v~GNlKfd~~~-~~~~~~~~~~~r~~l~~~r~v~iaaST---H~GEeei~l~~~~~l~~~~~  259 (419)
T COG1519         188 ----DAQRFRSLGAKPVVVTGNLKFDIEP-PPQLAAELAALRRQLGGHRPVWVAAST---HEGEEEIILDAHQALKKQFP  259 (419)
T ss_pred             ----HHHHHHhcCCcceEEecceeecCCC-ChhhHHHHHHHHHhcCCCCceEEEecC---CCchHHHHHHHHHHHHhhCC
Confidence                123333321110  11111110000 0000   01256666666555566665   333344 8899999999999


Q ss_pred             CceEEEecCChhhHHHHHHHHHHcCCCC------------CcEEEcCCCCcHHHHHhccCCcEEecC--CCCCCchhHHH
Q 002729          742 NSALWLLRFPAAGEMRLRAYAVAQGVQP------------DQIIFTDVAMKQEHIRRSSLADLFLDT--PLCNAHTTGTD  807 (887)
Q Consensus       742 ~~~l~~~~~~~~~~~~l~~~~~~~g~~~------------~r~~~~~~~~~~~~~~~~~~~d~~ld~--~~~~g~~t~~e  807 (887)
                      |..|+++--.|.--..+.+.+...|+.-            ..|.+...  ..|...+|..+||+.=-  |--.||--.+|
T Consensus       260 ~~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~Dt--mGEL~l~y~~adiAFVGGSlv~~GGHN~LE  337 (419)
T COG1519         260 NLLLILVPRHPERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDT--MGELGLLYGIADIAFVGGSLVPIGGHNPLE  337 (419)
T ss_pred             CceEEEecCChhhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEec--HhHHHHHHhhccEEEECCcccCCCCCChhh
Confidence            9999988766664556777777776531            13333322  35678889999998743  33377777899


Q ss_pred             HHHhCCceeeecccchhhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhc-CHHHHHHHHHHHHhhc
Q 002729          808 ILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLAL-DRQKLQALTNKLKSVR  874 (887)
Q Consensus       808 al~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l~~-d~~~~~~~~~~~~~~~  874 (887)
                      ++++|+|||+=+-..--+-....++.+=|.   +++++ ++.+..++.+.. |++.+.++.+...+..
T Consensus       338 pa~~~~pvi~Gp~~~Nf~ei~~~l~~~ga~---~~v~~-~~~l~~~v~~l~~~~~~r~~~~~~~~~~v  401 (419)
T COG1519         338 PAAFGTPVIFGPYTFNFSDIAERLLQAGAG---LQVED-ADLLAKAVELLLADEDKREAYGRAGLEFL  401 (419)
T ss_pred             HHHcCCCEEeCCccccHHHHHHHHHhcCCe---EEECC-HHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            999999999855444333333344433233   56677 777777777775 6999998877766543

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.67  E-value=0.0055  Score=59.13  Aligned_cols=166  Identities=17%  Similarity=0.186  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChH-HHHHHHHHH
Q 002729           50 DMCIARNEEALRLEPRFAECYGNMANAWKEKG-DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLN-EAAQCCRQA  127 (887)
Q Consensus        50 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~~  127 (887)
                      ..|+++-+.++..+|.+..+|...-.++...+ +..+-++++..+++.+|++-++|...-.+....|++. .-++..+.+
T Consensus        60 ~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~  139 (318)
T KOG0530|consen   60 PRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLM  139 (318)
T ss_pred             HHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHH
Confidence            33444444555555555555544444443332 3445555555666666666666555555555555555 555555566


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHH-cC-----CHHHHHHHHHHHHhhCCC
Q 002729          128 LALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFME-SG-----DLNRALQYYKEAVKLKPT  201 (887)
Q Consensus       128 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g-----~~~~A~~~~~~~l~~~~~  201 (887)
                      +..+.++..+|...-.+...-+.++.-+.+..++++.+-.+-.+|+..--+... .|     ..+.-+.+..+.+...|+
T Consensus       140 l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~  219 (318)
T KOG0530|consen  140 LDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPN  219 (318)
T ss_pred             HhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCC
Confidence            655555555555555555555556665555555555554444444432211111 11     122334455555566666


Q ss_pred             CHHHHHHHHHHHHH
Q 002729          202 FPDAYLNLGNVYKA  215 (887)
Q Consensus       202 ~~~~~~~l~~~~~~  215 (887)
                      +..+|+.|.-++..
T Consensus       220 NeSaWnYL~G~l~~  233 (318)
T KOG0530|consen  220 NESAWNYLKGLLEL  233 (318)
T ss_pred             CccHHHHHHHHHHh
Confidence            66666665555554

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.66  E-value=0.0025  Score=63.18  Aligned_cols=161  Identities=18%  Similarity=0.131  Sum_probs=100.1

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHH
Q 002729           33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF-ADAWSNLASAY  111 (887)
Q Consensus        33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~  111 (887)
                      .+.-+..+.-....|++.+|...|..++...|++..+...++.+|...|+.+.|...+...-...... ..........+
T Consensus       134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll  213 (304)
T COG3118         134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELL  213 (304)
T ss_pred             HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence            34455566667777777777777777777777777777777777777777777777776644332221 11111122333


Q ss_pred             HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--CChHHHHHHHHHHHHHcCCHHHHH
Q 002729          112 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ--PTFAIAWSNLAGLFMESGDLNRAL  189 (887)
Q Consensus       112 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~  189 (887)
                      .+.....+.. .+++.+..+|++.++.+.++..+...|+.++|.+.+-..++.+  -++..+...+..++...|.-+.+.
T Consensus       214 ~qaa~~~~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~  292 (304)
T COG3118         214 EQAAATPEIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLV  292 (304)
T ss_pred             HHHhcCCCHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHH
Confidence            3333333322 2344456678888888888888888888888888777777664  334556666667776666555444


Q ss_pred             HHHHH
Q 002729          190 QYYKE  194 (887)
Q Consensus       190 ~~~~~  194 (887)
                      ..+++
T Consensus       293 ~~~RR  297 (304)
T COG3118         293 LAYRR  297 (304)
T ss_pred             HHHHH
Confidence            44443

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.65  E-value=0.015  Score=61.03  Aligned_cols=99  Identities=21%  Similarity=0.204  Sum_probs=49.6

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHH-hcCCCcHHHH
Q 002729           33 TDNLLLLGAIYYQLHDYDMCIARNEEALRL----EPRFAECYGNMANAWKE---KGDIDLAIRYYLVAI-ELRPNFADAW  104 (887)
Q Consensus        33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al-~~~p~~~~~~  104 (887)
                      ++....+-.+|....+|+.-+++.+.+-..    .++.....+..|.++.+   .|+.++|+..+..++ ...+.+++++
T Consensus       141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~  220 (374)
T PF13281_consen  141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL  220 (374)
T ss_pred             hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence            344444555555555666555555555443    22344455555555555   556666666655532 2334455555


Q ss_pred             HHHHHHHHHc---------CChHHHHHHHHHHHHhC
Q 002729          105 SNLASAYMRK---------GRLNEAAQCCRQALALN  131 (887)
Q Consensus       105 ~~la~~~~~~---------g~~~~A~~~~~~~l~~~  131 (887)
                      -.+|.+|...         ...++|+..|.++.+.+
T Consensus       221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~  256 (374)
T PF13281_consen  221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE  256 (374)
T ss_pred             HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC
Confidence            5555555321         12444555555555444

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.65  E-value=0.00087  Score=63.65  Aligned_cols=97  Identities=22%  Similarity=0.219  Sum_probs=73.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHh--------hCCCc----------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002729            4 ALAHQMYKSGSYKQALEHSNSVYE--------RNPLR----------TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR   65 (887)
Q Consensus         4 ~la~~~~~~g~~~~A~~~~~~~l~--------~~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~   65 (887)
                      +.|+.+++.|+|.+|...|..++.        ..|.+          ...+.+..+|++..|+|-++++....++..+|.
T Consensus       183 q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~  262 (329)
T KOG0545|consen  183 QEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPG  262 (329)
T ss_pred             HhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCc
Confidence            568889999999999998888753        23433          234566777777777777888888777777777


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 002729           66 FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF  100 (887)
Q Consensus        66 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  100 (887)
                      +..+++..|.+....-+.++|...|.++++++|.-
T Consensus       263 nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl  297 (329)
T KOG0545|consen  263 NVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL  297 (329)
T ss_pred             hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence            77788877777777777777777777777777763

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=97.65  E-value=0.39  Score=60.92  Aligned_cols=385  Identities=15%  Similarity=0.103  Sum_probs=209.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 002729           38 LLGAIYYQLHDYDMCIARNEEALRLEPR----FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMR  113 (887)
Q Consensus        38 ~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  113 (887)
                      .++.+-++.+.|..|+-++++- ...+.    ....++.+-.+|...++++.-...... ...+|+    ..........
T Consensus      1388 tLa~aSfrc~~y~RalmylEs~-~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~-r~a~~s----l~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESH-RSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR-RFADPS----LYQQILEHEA 1461 (2382)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH-hhcCcc----HHHHHHHHHh
Confidence            6788889999999999999985 22222    123444455589999999887766653 122232    4455566778


Q ss_pred             cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHH-HHHHHcCCHHHHHHHH
Q 002729          114 KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLA-GLFMESGDLNRALQYY  192 (887)
Q Consensus       114 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~~~g~~~~A~~~~  192 (887)
                      .|++..|..+|+++++.+|+....+...-......|.++..+...+-.....++...-|+.++ .+..+.++++.-.++.
T Consensus      1462 ~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred             hccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence            899999999999999999998888888888888889999888877776665555555555543 3446677777666554


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHcCChHHHH--HHHHHHHhh--CC--------C-hhHHhhHHHHHHHcCChHHHHHHH
Q 002729          193 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAI--MCYQRAVQT--RP--------N-AIAFGNLASTYYERGQADMAILYY  259 (887)
Q Consensus       193 ~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~--~~~~~~~~~--~p--------~-~~~~~~la~~~~~~g~~~~A~~~~  259 (887)
                      .   ..+-.+..+.. +|.+.....+-+.-.  +..+.+.+.  .|        + ...|..+...+... +.+...+.+
T Consensus      1542 ~---~~n~e~w~~~~-~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~~~~~l 1616 (2382)
T KOG0890|consen 1542 S---DRNIEYWSVES-IGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELENSIEEL 1616 (2382)
T ss_pred             h---cccccchhHHH-HHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence            4   11112212211 444444433222111  111111110  00        0 11111111111110 111111111


Q ss_pred             HHHHhcCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cC----CCChHHHHhHHHHHHHcCChhHHHHHH
Q 002729          260 KQAIGCDPR-----FLEAYNNLGNALKDVGRVDEAIQCYNQCLS---LQ----PSHPQALTNLGNIYMEWNMLPAAASYY  327 (887)
Q Consensus       260 ~~~l~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~  327 (887)
                      .+   ..++     +.+-|.+....-....+..+-+-.+++..-   .+    ..-.+.|...+++....|+++.|...+
T Consensus      1617 ~~---~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nal 1693 (2382)
T KOG0890|consen 1617 KK---VSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNAL 1693 (2382)
T ss_pred             hc---cCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHH
Confidence            11   1111     111222222211111223333333333221   12    223567777777777777777777777


Q ss_pred             HHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcC-CC----------C------HHHHHHHHHHHHHcCCH--
Q 002729          328 KATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRID-PL----------A------ADGLVNRGNTYKEIGRV--  388 (887)
Q Consensus       328 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~----------~------~~~~~~l~~~~~~~g~~--  388 (887)
                      -++.+..  -+.++...|..+.+.|+-..|+..+++.++.+ |+          .      ..+...++.-....|++  
T Consensus      1694 l~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s 1771 (2382)
T KOG0890|consen 1694 LNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFES 1771 (2382)
T ss_pred             Hhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhH
Confidence            7666655  45666777777777777777777777777543 21          1      01233333444444442  


Q ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHH------------hCCCHHH---HHHHHHHHHHcCCC
Q 002729          389 TDAIQDYIRAITIRPTMAEAHANLASAYK------------DSGHVEA---AIKSYKQALLLRPD  438 (887)
Q Consensus       389 ~~A~~~~~~al~~~p~~~~~~~~la~~~~------------~~g~~~~---A~~~~~~al~~~p~  438 (887)
                      ++-++.|+.+.+..|....-++.+|..|.            +.|++..   ++..|.+++..+..
T Consensus      1772 ~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg~~ 1836 (2382)
T KOG0890|consen 1772 KDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYGNQ 1836 (2382)
T ss_pred             HHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhcch
Confidence            34566777777777766555666654332            3444444   55555666665543

>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1

Probab=97.64  E-value=0.0001  Score=61.85  Aligned_cols=77  Identities=13%  Similarity=0.141  Sum_probs=58.1

Q ss_pred             EEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002729          792 LFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKL  870 (887)
Q Consensus       792 ~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l~~d~~~~~~~~~~~  870 (887)
                      |+|.|...+| +...+|+|++|+|||+-.-..+..-.      .-|... +.++|.++.+++...+.+|++.+++++++.
T Consensus         1 i~Ln~~~~~~~~~r~~E~~a~G~~vi~~~~~~~~~~~------~~~~~~-~~~~~~~el~~~i~~ll~~~~~~~~ia~~a   73 (92)
T PF13524_consen    1 INLNPSRSDGPNMRIFEAMACGTPVISDDSPGLREIF------EDGEHI-ITYNDPEELAEKIEYLLENPEERRRIAKNA   73 (92)
T ss_pred             CEeeCCCCCCCchHHHHHHHCCCeEEECChHHHHHHc------CCCCeE-EEECCHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence            3566655556 78899999999999986553333211      114334 566899999999999999999999999999


Q ss_pred             Hhhcc
Q 002729          871 KSVRL  875 (887)
Q Consensus       871 ~~~~~  875 (887)
                      ++...
T Consensus        74 ~~~v~   78 (92)
T PF13524_consen   74 RERVL   78 (92)
T ss_pred             HHHHH
Confidence            88764

>PLN02562 UDP-glycosyltransferase

Probab=97.63  E-value=0.0012  Score=72.92  Aligned_cols=144  Identities=15%  Similarity=0.133  Sum_probs=92.9

Q ss_pred             CcEEEEecCCCC-CCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCC
Q 002729          712 DKFIFACFNQLY-KMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLA  790 (887)
Q Consensus       712 ~~~~~~~~~~~~-k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~  790 (887)
                      +.++|.||+... .+.++.++.....++..+.-.||.++.+..  ..+.+-+.+. + ++|+.+.++.|+.+.+.- ..+
T Consensus       273 ~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~~~--~~l~~~~~~~-~-~~~~~v~~w~PQ~~iL~h-~~v  347 (448)
T PLN02562        273 NSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPVWR--EGLPPGYVER-V-SKQGKVVSWAPQLEVLKH-QAV  347 (448)
T ss_pred             CceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCCch--hhCCHHHHHH-h-ccCEEEEecCCHHHHhCC-Ccc
Confidence            348999999865 789999999999999999988887753211  1121112211 2 478888899998887742 334


Q ss_pred             cEEecCCCCCCchhHHHHHHhCCceeeec--ccch--hhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHH
Q 002729          791 DLFLDTPLCNAHTTGTDILWAGLPMITLP--LEKM--ATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQAL  866 (887)
Q Consensus       791 d~~ld~~~~~g~~t~~eal~~gvPvvt~~--g~~~--~~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l~~d~~~~~~~  866 (887)
                      -.|+   ..+|-+|++||+++|||+|+++  ++.+  +.|+..    .+|+.=.+-.-+.++..+...++..|++.+++.
T Consensus       348 ~~fv---tH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~----~~g~g~~~~~~~~~~l~~~v~~~l~~~~~r~~a  420 (448)
T PLN02562        348 GCYL---THCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVD----VWKIGVRISGFGQKEVEEGLRKVMEDSGMGERL  420 (448)
T ss_pred             ceEE---ecCcchhHHHHHHcCCCEEeCCcccchHHHHHHHHH----HhCceeEeCCCCHHHHHHHHHHHhCCHHHHHHH
Confidence            4565   5778999999999999999886  3333  222221    123322111236677555555666787766654


Q ss_pred             H
Q 002729          867 T  867 (887)
Q Consensus       867 ~  867 (887)
                      +
T Consensus       421 ~  421 (448)
T PLN02562        421 M  421 (448)
T ss_pred             H
Confidence            4

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.63  E-value=0.00013  Score=50.96  Aligned_cols=41  Identities=39%  Similarity=0.465  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHHHHHH
Q 002729          407 EAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLL  447 (887)
Q Consensus       407 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  447 (887)
                      .++..+|.+|...|++++|++.|+++++.+|+++.++..++
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            34555666666666666666666666666666666655543

>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed

Probab=97.62  E-value=0.00081  Score=72.19  Aligned_cols=80  Identities=14%  Similarity=0.190  Sum_probs=59.4

Q ss_pred             HHHHhccCCcEEecCCCCCCchhHHHHHHhCCceeeecccc----hhhhhHHHHHHhcCCCCccccC---CHHHHHHHHH
Q 002729          782 EHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEK----MATRVAGSLCLATGLGEEMIVN---SMKEYEERAV  854 (887)
Q Consensus       782 ~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~----~~~r~~~~~l~~~g~~~~~~~~---~~~~y~~~a~  854 (887)
                      +...+|..+|+++   .-+|++|+.|++++|+|.|..+-..    .....-+..+...|... .+.+   +.+...+...
T Consensus       245 ~m~~~~~~adlvI---sr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~g~~~-~l~~~~~~~~~l~~~l~  320 (352)
T PRK12446        245 ELPDILAITDFVI---SRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQGYAS-VLYEEDVTVNSLIKHVE  320 (352)
T ss_pred             hHHHHHHhCCEEE---ECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHCCCEE-EcchhcCCHHHHHHHHH
Confidence            4556789999997   4568999999999999999886432    23445566788888876 4432   5678888888


Q ss_pred             HHhcCHHHHHH
Q 002729          855 SLALDRQKLQA  865 (887)
Q Consensus       855 ~l~~d~~~~~~  865 (887)
                      .+.+|++.+++
T Consensus       321 ~ll~~~~~~~~  331 (352)
T PRK12446        321 ELSHNNEKYKT  331 (352)
T ss_pred             HHHcCHHHHHH
Confidence            88889877654

>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=97.62  E-value=0.00075  Score=71.61  Aligned_cols=161  Identities=16%  Similarity=0.179  Sum_probs=103.6

Q ss_pred             CCCCCCCCCCcEEEEe--cCCC---CCCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCC
Q 002729          703 KRSDYGLPEDKFIFAC--FNQL---YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDV  777 (887)
Q Consensus       703 ~r~~~~l~~~~~~~~~--~~~~---~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~  777 (887)
                      .|..+ ++.+..+++-  .+|.   .++.|.++++-.++.++.|+.++++...+......+.+.....+.+.. +++.. 
T Consensus       175 ~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~~~~~~~i~~~~~~~~~~~~-~~~~~-  251 (373)
T PF02684_consen  175 AREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVAPEVHEELIEEILAEYPPDVS-IVIIE-  251 (373)
T ss_pred             HHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHHhhCCCCe-EEEcC-
Confidence            34445 7666655443  3333   366799999999999999999998876665544556666666655322 33321 


Q ss_pred             CCcHHHHHhccCCcEEecCCCCCCchhHHHHHHhCCceee-ecccchhhhhHHHHH--HhcCCCC---------cccc--
Q 002729          778 AMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMIT-LPLEKMATRVAGSLC--LATGLGE---------EMIV--  843 (887)
Q Consensus       778 ~~~~~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt-~~g~~~~~r~~~~~l--~~~g~~~---------~~~~--  843 (887)
                         .+-...++.+|++|    -.+||.|+|+.-+|+|.|. -....+.-.++--++  .-.||+-         |++-  
T Consensus       252 ---~~~~~~m~~ad~al----~~SGTaTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~  324 (373)
T PF02684_consen  252 ---GESYDAMAAADAAL----AASGTATLEAALLGVPMVVAYKVSPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQED  324 (373)
T ss_pred             ---CchHHHHHhCcchh----hcCCHHHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcCCEeechhhhcCCCcchhhhccc
Confidence               12345678899998    7789999999999999554 454444444443332  2235544         1332  


Q ss_pred             CCHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 002729          844 NSMKEYEERAVSLALDRQKLQALTNKLKSV  873 (887)
Q Consensus       844 ~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~  873 (887)
                      .+++...+.+..+..|.+.+...+...+..
T Consensus       325 ~~~~~i~~~~~~ll~~~~~~~~~~~~~~~~  354 (373)
T PF02684_consen  325 ATPENIAAELLELLENPEKRKKQKELFREI  354 (373)
T ss_pred             CCHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            367887888888999998766655555443

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process

>PLN02554 UDP-glycosyltransferase family protein

Probab=97.61  E-value=0.00092  Score=74.83  Aligned_cols=103  Identities=21%  Similarity=0.279  Sum_probs=75.7

Q ss_pred             CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCChh-----------h-HHHHHHHHHHcCCCCCcEEEcCCCC
Q 002729          712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA-----------G-EMRLRAYAVAQGVQPDQIIFTDVAM  779 (887)
Q Consensus       712 ~~~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~-----------~-~~~l~~~~~~~g~~~~r~~~~~~~~  779 (887)
                      +.++|.||+.....+++.++..+.-++..+.-.||.++.+..           . ...+-.-+.+. + .+|+.+.++.|
T Consensus       274 ~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r-~-~~~g~v~~W~P  351 (481)
T PLN02554        274 KSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDR-T-KDIGKVIGWAP  351 (481)
T ss_pred             CcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEEEEcCCcccccccccccccchhhhCChHHHHH-h-ccCceEEeeCC
Confidence            458999999999999999999999999999888898764210           0 01111122211 2 46777789999


Q ss_pred             cHHHHHhccCCcEEecCCCCCCchhHHHHHHhCCceeeecc
Q 002729          780 KQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPL  820 (887)
Q Consensus       780 ~~~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g  820 (887)
                      ..+.|. ...+..|+   ..+|-+|++||+++|||+|+++-
T Consensus       352 Q~~iL~-H~~v~~Fv---tH~G~nS~~Ea~~~GVP~l~~P~  388 (481)
T PLN02554        352 QVAVLA-KPAIGGFV---THCGWNSILESLWFGVPMAAWPL  388 (481)
T ss_pred             HHHHhC-CcccCccc---ccCccchHHHHHHcCCCEEecCc
Confidence            887774 36677775   57778999999999999999873

>PLN00414 glycosyltransferase family protein

Probab=97.61  E-value=0.00092  Score=73.62  Aligned_cols=156  Identities=10%  Similarity=0.083  Sum_probs=92.1

Q ss_pred             CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCChh---hHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhcc
Q 002729          712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA---GEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSS  788 (887)
Q Consensus       712 ~~~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~---~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~  788 (887)
                      +.++|.||+....++.+-+.-.+.=|...-.-.||++..+..   ....+-+-|.+. +....+++.++.|..+.+. ..
T Consensus       252 ~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~~~~~~~~~lp~~f~~r-~~~~g~vv~~w~PQ~~vL~-h~  329 (446)
T PLN00414        252 GSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPKGSSTVQEALPEGFEER-VKGRGIVWEGWVEQPLILS-HP  329 (446)
T ss_pred             CceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCCCcccchhhCChhHHHH-hcCCCeEEeccCCHHHHhc-CC
Confidence            459999999999887554443333344444456788864211   011122222222 1112267789999888774 35


Q ss_pred             CCcEEecCCCCCCchhHHHHHHhCCceeeecccchhhhhHHHHH-HhcCCCCcccc------CCHHHHHHHHHHHhcCH-
Q 002729          789 LADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLC-LATGLGEEMIV------NSMKEYEERAVSLALDR-  860 (887)
Q Consensus       789 ~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l-~~~g~~~~~~~------~~~~~y~~~a~~l~~d~-  860 (887)
                      .++.||   ...|.+|++||+++|||+|+++--.= ....+.++ ..+|+.- -+.      -+.++..+...++..|. 
T Consensus       330 ~v~~fv---tH~G~nS~~Ea~~~GvP~l~~P~~~d-Q~~na~~~~~~~g~g~-~~~~~~~~~~~~~~i~~~v~~~m~~~~  404 (446)
T PLN00414        330 SVGCFV---NHCGFGSMWESLVSDCQIVFIPQLAD-QVLITRLLTEELEVSV-KVQREDSGWFSKESLRDTVKSVMDKDS  404 (446)
T ss_pred             ccceEE---ecCchhHHHHHHHcCCCEEecCcccc-hHHHHHHHHHHhCeEE-EeccccCCccCHHHHHHHHHHHhcCCh
Confidence            567786   57889999999999999999974211 12223344 3455543 221      26667666666666553 


Q ss_pred             HHHHHHHHHHHhhc
Q 002729          861 QKLQALTNKLKSVR  874 (887)
Q Consensus       861 ~~~~~~~~~~~~~~  874 (887)
                      +..+++|++.++..
T Consensus       405 e~g~~~r~~a~~~~  418 (446)
T PLN00414        405 EIGNLVKRNHKKLK  418 (446)
T ss_pred             hhHHHHHHHHHHHH
Confidence            55666776666543

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.61  E-value=0.00014  Score=50.91  Aligned_cols=42  Identities=24%  Similarity=0.370  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 002729          373 DGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLAS  414 (887)
Q Consensus       373 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  414 (887)
                      .++..+|..|...|++++|++.|+++++.+|+++.++..++.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            345556666666666666666666666666666666665553

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.60  E-value=0.015  Score=64.86  Aligned_cols=120  Identities=12%  Similarity=-0.005  Sum_probs=82.2

Q ss_pred             cCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHHH
Q 002729          317 WNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPL----AADGLVNRGNTYKEIGRVTDAI  392 (887)
Q Consensus       317 ~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~g~~~~A~  392 (887)
                      ....+.|.++++...+..|+........|.++...|+.++|++.|++++.....    ..-.++.+++++.-+.+|++|.
T Consensus       246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~  325 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA  325 (468)
T ss_pred             CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence            344556666666666667766666666677777777777777777766643221    1236677888888888888888


Q ss_pred             HHHHHHHhcCCCc-HHHHHHHHHHHHhCCCH-------HHHHHHHHHHHHcC
Q 002729          393 QDYIRAITIRPTM-AEAHANLASAYKDSGHV-------EAAIKSYKQALLLR  436 (887)
Q Consensus       393 ~~~~~al~~~p~~-~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~  436 (887)
                      +.|.+..+.+.-. .-..+..|.++...|+.       ++|.++|+++-...
T Consensus       326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~  377 (468)
T PF10300_consen  326 EYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK  377 (468)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence            8888888766543 33445567777778877       88888888876654

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PLN02173 UDP-glucosyl transferase family protein

Probab=97.60  E-value=0.00089  Score=73.50  Aligned_cols=149  Identities=12%  Similarity=0.202  Sum_probs=91.8

Q ss_pred             CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCc
Q 002729          712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD  791 (887)
Q Consensus       712 ~~~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d  791 (887)
                      +.++|.||+....++++.++..+.-|...|  .||.+..+..  ..+-+-+.+. +..+++.+.++.|..+.|. ...+.
T Consensus       264 ~svvyvsfGS~~~~~~~~~~ela~gLs~~~--flWvvr~~~~--~~lp~~~~~~-~~~~~~~i~~W~PQ~~iL~-H~~v~  337 (449)
T PLN02173        264 GSVVYIAFGSMAKLSSEQMEEIASAISNFS--YLWVVRASEE--SKLPPGFLET-VDKDKSLVLKWSPQLQVLS-NKAIG  337 (449)
T ss_pred             CceEEEEecccccCCHHHHHHHHHHhcCCC--EEEEEeccch--hcccchHHHh-hcCCceEEeCCCCHHHHhC-CCccc
Confidence            458999999999999999998888886666  6788763211  1121122221 2257788889999887774 34456


Q ss_pred             EEecCCCCCCchhHHHHHHhCCceeeecccchhhhhHHHHHH-hcCCCCcccc------CCHHHHHHHHHHHhcCHHHHH
Q 002729          792 LFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCL-ATGLGEEMIV------NSMKEYEERAVSLALDRQKLQ  864 (887)
Q Consensus       792 ~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~-~~g~~~~~~~------~~~~~y~~~a~~l~~d~~~~~  864 (887)
                      .||   ...|.+|++||+++|||+|+++--.=.. .-+-++. .+|+.-.+-.      -+.++..+...++..|.+ -+
T Consensus       338 ~Fv---tHcGwnS~~Eai~~GVP~l~~P~~~DQ~-~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~-~~  412 (449)
T PLN02173        338 CFM---THCGWNSTMEGLSLGVPMVAMPQWTDQP-MNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGEK-SK  412 (449)
T ss_pred             eEE---ecCccchHHHHHHcCCCEEecCchhcch-HHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcCCh-HH
Confidence            775   5778999999999999999987321111 1122232 2133221110      156776666666666643 24


Q ss_pred             HHHHHHH
Q 002729          865 ALTNKLK  871 (887)
Q Consensus       865 ~~~~~~~  871 (887)
                      ++|.+.+
T Consensus       413 ~~r~~a~  419 (449)
T PLN02173        413 EMKENAG  419 (449)
T ss_pred             HHHHHHH
Confidence            4554444

>PLN00164 glucosyltransferase; Provisional

Probab=97.60  E-value=0.00075  Score=75.26  Aligned_cols=153  Identities=20%  Similarity=0.266  Sum_probs=93.6

Q ss_pred             CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCChh----------hHHHHHHHHHHcCCCCCcEEEcCCCCcH
Q 002729          712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA----------GEMRLRAYAVAQGVQPDQIIFTDVAMKQ  781 (887)
Q Consensus       712 ~~~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~----------~~~~l~~~~~~~g~~~~r~~~~~~~~~~  781 (887)
                      ..++|.||+....++.+.++..+.-|+..+.-.||.+..+..          ....+-+-+.+. +....+++.++.|..
T Consensus       272 ~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~-~~~~g~~v~~w~PQ~  350 (480)
T PLN00164        272 ASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWVLRGPPAAGSRHPTDADLDELLPEGFLER-TKGRGLVWPTWAPQK  350 (480)
T ss_pred             CceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEEEcCCcccccccccccchhhhCChHHHHH-hcCCCeEEeecCCHH
Confidence            448999999998898888998888999988888999874321          011121122211 111236778999988


Q ss_pred             HHHHhccCCcEEecCCCCCCchhHHHHHHhCCceeeec--ccchhhhhHHHHHHhcCCCCcccc--------CCHHHHHH
Q 002729          782 EHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLP--LEKMATRVAGSLCLATGLGEEMIV--------NSMKEYEE  851 (887)
Q Consensus       782 ~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~--g~~~~~r~~~~~l~~~g~~~~~~~--------~~~~~y~~  851 (887)
                      +.|.- ..+-.||   ..+|-+|++||+++|||+|+++  ++.+..  +.-+...+|+.- .+.        -+.++..+
T Consensus       351 ~iL~h-~~vg~fv---tH~GwnS~~Eai~~GVP~l~~P~~~DQ~~N--a~~~~~~~gvG~-~~~~~~~~~~~~~~e~l~~  423 (480)
T PLN00164        351 EILAH-AAVGGFV---THCGWNSVLESLWHGVPMAPWPLYAEQHLN--AFELVADMGVAV-AMKVDRKRDNFVEAAELER  423 (480)
T ss_pred             HHhcC-cccCeEE---eecccchHHHHHHcCCCEEeCCccccchhH--HHHHHHHhCeEE-EeccccccCCcCcHHHHHH
Confidence            77742 3344565   5778899999999999999987  333322  111223345543 221        14566555


Q ss_pred             HHHHHhcCHH-HHHHHHHHHHh
Q 002729          852 RAVSLALDRQ-KLQALTNKLKS  872 (887)
Q Consensus       852 ~a~~l~~d~~-~~~~~~~~~~~  872 (887)
                      ...++..|.+ ..+++|++.++
T Consensus       424 av~~vm~~~~~~~~~~r~~a~~  445 (480)
T PLN00164        424 AVRSLMGGGEEEGRKAREKAAE  445 (480)
T ss_pred             HHHHHhcCCchhHHHHHHHHHH
Confidence            5556666543 24445544443

>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein

Probab=97.59  E-value=0.00099  Score=74.05  Aligned_cols=103  Identities=17%  Similarity=0.271  Sum_probs=76.0

Q ss_pred             CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCChhh---HHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhcc
Q 002729          712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAG---EMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSS  788 (887)
Q Consensus       712 ~~~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~---~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~  788 (887)
                      ..++|.||+.....+++.++-.++-|...+...||.++.+...   ...+-.-+.+. +....+++.++.|..+.+. ..
T Consensus       283 ~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r-~~~~g~~v~~w~PQ~~vL~-h~  360 (477)
T PLN02863        283 HKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIWCVKEPVNEESDYSNIPSGFEDR-VAGRGLVIRGWAPQVAILS-HR  360 (477)
T ss_pred             CceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEEEECCCcccccchhhCCHHHHHH-hccCCEEecCCCCHHHHhc-CC
Confidence            4489999999999999999988888999998889988743211   11122222211 1134578889999887774 34


Q ss_pred             CCcEEecCCCCCCchhHHHHHHhCCceeeec
Q 002729          789 LADLFLDTPLCNAHTTGTDILWAGLPMITLP  819 (887)
Q Consensus       789 ~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~  819 (887)
                      .++.|+   ..+|-+|++||+++|||+|+++
T Consensus       361 ~v~~fv---tH~G~nS~~Eal~~GvP~l~~P  388 (477)
T PLN02863        361 AVGAFL---THCGWNSVLEGLVAGVPMLAWP  388 (477)
T ss_pred             CcCeEE---ecCCchHHHHHHHcCCCEEeCC
Confidence            588886   5788899999999999999986

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.59  E-value=0.00011  Score=77.00  Aligned_cols=103  Identities=23%  Similarity=0.262  Sum_probs=53.3

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHH
Q 002729           40 GAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNE  119 (887)
Q Consensus        40 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  119 (887)
                      +...+.-+.++.|+..|.++++++|+++..+-..+.++.+.+++..|+..+.++++.+|....+|...|.+....+.+.+
T Consensus        11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~   90 (476)
T KOG0376|consen   11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK   90 (476)
T ss_pred             HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence            33444445555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHH
Q 002729          120 AAQCCRQALALNPLLVDAHSNLG  142 (887)
Q Consensus       120 A~~~~~~~l~~~p~~~~~~~~la  142 (887)
                      |...|++.....|+++.+...+.
T Consensus        91 A~~~l~~~~~l~Pnd~~~~r~~~  113 (476)
T KOG0376|consen   91 ALLDLEKVKKLAPNDPDATRKID  113 (476)
T ss_pred             HHHHHHHhhhcCcCcHHHHHHHH
Confidence            55555555555555554444333

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.59  E-value=0.027  Score=61.05  Aligned_cols=165  Identities=21%  Similarity=0.275  Sum_probs=82.9

Q ss_pred             ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC----hhH
Q 002729          167 TFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKP----TFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN----AIA  238 (887)
Q Consensus       167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~  238 (887)
                      .....|...+.+..+.|+++.|...+.++...++    ..+.+....+..+...|+..+|+..++..++....    ...
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~  223 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS  223 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence            3445666667777777777777777666665431    13456666667777777777777776666652111    000


Q ss_pred             HhhHHHHHHH--cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCCCChHHHHhH
Q 002729          239 FGNLASTYYE--RGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDV------GRVDEAIQCYNQCLSLQPSHPQALTNL  310 (887)
Q Consensus       239 ~~~la~~~~~--~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~l  310 (887)
                      ...+......  ...........     .......++..+|......      +..+++...|+++.+..|.....+..+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~  298 (352)
T PF02259_consen  224 NAELKSGLLESLEVISSTNLDKE-----SKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSW  298 (352)
T ss_pred             HHHHhhccccccccccccchhhh-----hHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHH
Confidence            0000000000  00000000000     0001123445555555555      566666666666666666666666665


Q ss_pred             HHHHHHcC-----------------ChhHHHHHHHHHHhccCC
Q 002729          311 GNIYMEWN-----------------MLPAAASYYKATLAVTTG  336 (887)
Q Consensus       311 ~~~~~~~g-----------------~~~~A~~~~~~~~~~~~~  336 (887)
                      |..+.+.-                 -...|+..|-+++...++
T Consensus       299 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  299 ALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             HHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence            55544221                 123477777777777766

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PLN02764 glycosyltransferase family protein

Probab=97.59  E-value=0.0009  Score=73.24  Aligned_cols=155  Identities=9%  Similarity=0.053  Sum_probs=95.1

Q ss_pred             CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCChh---hHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhcc
Q 002729          712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA---GEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSS  788 (887)
Q Consensus       712 ~~~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~---~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~  788 (887)
                      +.++|.||+....++++-+.-.+.=|...-.-.+|++..+..   ....|-+-|.+. +...-+++.++.|..+.+. ..
T Consensus       257 ~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~~~~~~~~~~lp~~f~~r-~~grG~v~~~W~PQ~~vL~-h~  334 (453)
T PLN02764        257 DSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPPRGSSTIQEALPEGFEER-VKGRGVVWGGWVQQPLILS-HP  334 (453)
T ss_pred             CceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCCCCCcchhhhCCcchHhh-hccCCcEEeCCCCHHHHhc-Cc
Confidence            559999999999887776665555555555557888874221   011222222222 1112368889999988874 35


Q ss_pred             CCcEEecCCCCCCchhHHHHHHhCCceeeecccchhhhhHHHHH-HhcCCCCccc------cCCHHHHHHHHHHHhcCH-
Q 002729          789 LADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLC-LATGLGEEMI------VNSMKEYEERAVSLALDR-  860 (887)
Q Consensus       789 ~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l-~~~g~~~~~~------~~~~~~y~~~a~~l~~d~-  860 (887)
                      .++.|+   ..+|.+|++||+++|||+|+++--.= ...-+..+ ..+|+.- -+      .-+.++..+...++..+. 
T Consensus       335 ~v~~Fv---tH~G~nS~~Eal~~GVP~l~~P~~~D-Q~~na~~l~~~~g~gv-~~~~~~~~~~~~e~i~~av~~vm~~~~  409 (453)
T PLN02764        335 SVGCFV---SHCGFGSMWESLLSDCQIVLVPQLGD-QVLNTRLLSDELKVSV-EVAREETGWFSKESLRDAINSVMKRDS  409 (453)
T ss_pred             ccCeEE---ecCCchHHHHHHHcCCCEEeCCcccc-hHHHHHHHHHHhceEE-EeccccCCccCHHHHHHHHHHHhcCCc
Confidence            577786   57889999999999999999874211 11112233 2334432 11      126677666666666664 


Q ss_pred             HHHHHHHHHHHhh
Q 002729          861 QKLQALTNKLKSV  873 (887)
Q Consensus       861 ~~~~~~~~~~~~~  873 (887)
                      +..+++|.+.++-
T Consensus       410 ~~g~~~r~~a~~~  422 (453)
T PLN02764        410 EIGNLVKKNHTKW  422 (453)
T ss_pred             hhHHHHHHHHHHH
Confidence            5566677666654

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.58  E-value=0.0013  Score=62.58  Aligned_cols=104  Identities=16%  Similarity=0.136  Sum_probs=82.1

Q ss_pred             HhhHHHHHHHcCCHHHHHHHHHHHHh--------cCCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002729          341 FNNLAVIYKQQGNYADAISCYNEVLR--------IDPLAA----------DGLVNRGNTYKEIGRVTDAIQDYIRAITIR  402 (887)
Q Consensus       341 ~~~la~~~~~~g~~~~A~~~~~~al~--------~~p~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  402 (887)
                      +..-|+-+++.|+|.+|...|+.++.        ..|..+          ..+.++..|+...|+|-++++.....+...
T Consensus       181 l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~  260 (329)
T KOG0545|consen  181 LHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH  260 (329)
T ss_pred             HHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence            33445555566666666666655543        234333          378889999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHHH
Q 002729          403 PTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATC  444 (887)
Q Consensus       403 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  444 (887)
                      |.+..+++..|.+....=+.++|.+.|.++++++|.-..+..
T Consensus       261 ~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVs  302 (329)
T KOG0545|consen  261 PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVS  302 (329)
T ss_pred             CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHH
Confidence            999999999999999999999999999999999997655543

>PLN02992 coniferyl-alcohol glucosyltransferase

Probab=97.57  E-value=0.0012  Score=72.88  Aligned_cols=139  Identities=17%  Similarity=0.219  Sum_probs=91.2

Q ss_pred             CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCChhh------------------HHHHHHHHHHcCCCCCcEE
Q 002729          712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAG------------------EMRLRAYAVAQGVQPDQII  773 (887)
Q Consensus       712 ~~~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~------------------~~~l~~~~~~~g~~~~r~~  773 (887)
                      +.++|.||+....++.+.++-.+.-|...|...||.+..+...                  .+.+-+-|.+. +....++
T Consensus       263 ~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR-~~~rg~v  341 (481)
T PLN02992        263 ESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSR-THDRGFV  341 (481)
T ss_pred             CceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCcccccccccccCcccccccchhhhCCHHHHHH-hcCCCEE
Confidence            4599999999999999999999999999999999998532100                  11121222221 2223488


Q ss_pred             EcCCCCcHHHHHhccCCcEEecCCCCCCchhHHHHHHhCCceeeecc--cchhhhhHHHHH-HhcCCCCcccc-----CC
Q 002729          774 FTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPL--EKMATRVAGSLC-LATGLGEEMIV-----NS  845 (887)
Q Consensus       774 ~~~~~~~~~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g--~~~~~r~~~~~l-~~~g~~~~~~~-----~~  845 (887)
                      +.++.|+.+.+.- ..+..|+   ..+|.+|++||+++|||+|+++-  +.+..   +..+ ..+|+.- .+.     -+
T Consensus       342 v~~W~PQ~~iL~h-~~vg~Fi---tH~G~nS~~Eal~~GVP~l~~P~~~DQ~~n---a~~~~~~~g~gv-~~~~~~~~~~  413 (481)
T PLN02992        342 VPSWAPQAEILAH-QAVGGFL---THCGWSSTLESVVGGVPMIAWPLFAEQNMN---AALLSDELGIAV-RSDDPKEVIS  413 (481)
T ss_pred             EeecCCHHHHhCC-cccCeeE---ecCchhHHHHHHHcCCCEEecCccchhHHH---HHHHHHHhCeeE-EecCCCCccc
Confidence            8999998877742 3344464   57789999999999999999873  22211   1222 2445543 232     25


Q ss_pred             HHHHHHHHHHHhcC
Q 002729          846 MKEYEERAVSLALD  859 (887)
Q Consensus       846 ~~~y~~~a~~l~~d  859 (887)
                      .++..+...++..+
T Consensus       414 ~~~l~~av~~vm~~  427 (481)
T PLN02992        414 RSKIEALVRKVMVE  427 (481)
T ss_pred             HHHHHHHHHHHhcC
Confidence            66666666676665

>PLN02208 glycosyltransferase family protein

Probab=97.54  E-value=0.0014  Score=72.02  Aligned_cols=153  Identities=10%  Similarity=0.088  Sum_probs=93.8

Q ss_pred             CCcEEEEecCCCCCCCHH-HHHHHHHH-HhhcCCceEEEecCChh---hHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHH
Q 002729          711 EDKFIFACFNQLYKMDPE-IFNTWCNI-LRRVPNSALWLLRFPAA---GEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIR  785 (887)
Q Consensus       711 ~~~~~~~~~~~~~k~~~~-~~~~~~~i-l~~~p~~~l~~~~~~~~---~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~  785 (887)
                      ++.++|.||+...++.++ +.++...+ ....|-  +|+...+..   ....+-+-|.+. +....+++.++.|..+.|.
T Consensus       250 ~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf--~wv~r~~~~~~~~~~~lp~~f~~r-~~~~g~~v~~W~PQ~~iL~  326 (442)
T PLN02208        250 PKSVVFCSLGSQIILEKDQFQELCLGMELTGLPF--LIAVKPPRGSSTVQEGLPEGFEER-VKGRGVVWGGWVQQPLILD  326 (442)
T ss_pred             CCcEEEEeccccccCCHHHHHHHHHHHHhCCCcE--EEEEeCCCcccchhhhCCHHHHHH-HhcCCcEeeccCCHHHHhc
Confidence            356999999999988887 77766665 666775  676653211   011122222222 1124468889999988774


Q ss_pred             hccCCcEEecCCCCCCchhHHHHHHhCCceeeecc--cchhhhhHHHHH-HhcCCCCcccc------CCHHHHHHHHHHH
Q 002729          786 RSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPL--EKMATRVAGSLC-LATGLGEEMIV------NSMKEYEERAVSL  856 (887)
Q Consensus       786 ~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g--~~~~~r~~~~~l-~~~g~~~~~~~------~~~~~y~~~a~~l  856 (887)
                       ...+..|+   ...|-++++||+++|||+|+++-  +.+..   +.++ ..+|+.- -+-      -+.++..+...++
T Consensus       327 -H~~v~~Fv---tHcG~nS~~Eai~~GVP~l~~P~~~DQ~~n---a~~~~~~~g~gv-~~~~~~~~~~~~~~l~~ai~~~  398 (442)
T PLN02208        327 -HPSIGCFV---NHCGPGTIWESLVSDCQMVLIPFLSDQVLF---TRLMTEEFEVSV-EVSREKTGWFSKESLSNAIKSV  398 (442)
T ss_pred             -CCccCeEE---ccCCchHHHHHHHcCCCEEecCcchhhHHH---HHHHHHHhceeE-EeccccCCcCcHHHHHHHHHHH
Confidence             35566676   57788999999999999999873  33321   1222 2245543 221      2556655555555


Q ss_pred             hcCH-HHHHHHHHHHHhhc
Q 002729          857 ALDR-QKLQALTNKLKSVR  874 (887)
Q Consensus       857 ~~d~-~~~~~~~~~~~~~~  874 (887)
                      ..|+ +..+++|++.++.+
T Consensus       399 m~~~~e~g~~~r~~~~~~~  417 (442)
T PLN02208        399 MDKDSDLGKLVRSNHTKLK  417 (442)
T ss_pred             hcCCchhHHHHHHHHHHHH
Confidence            5554 55667777666544

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.54  E-value=0.023  Score=54.99  Aligned_cols=124  Identities=13%  Similarity=0.084  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH-HHHHHHHH
Q 002729           15 YKQALEHSNSVYERNPLRTDNLLLLGAIYYQLH-DYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDID-LAIRYYLV   92 (887)
Q Consensus        15 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~   92 (887)
                      -..|+++-+.++..+|.+..+|...-.++..++ +..+-++++.+++..+|++...|...-.+....|+.. .-++..+.
T Consensus        59 S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~  138 (318)
T KOG0530|consen   59 SPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKL  138 (318)
T ss_pred             CHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHH
Confidence            344444444444444444444444443333322 3344444444444445555444444444444444444 44444444


Q ss_pred             HHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHH
Q 002729           93 AIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAH  138 (887)
Q Consensus        93 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~  138 (887)
                      ++..+.++-.+|...--+...-+.++.-+.+..++++.+-.+-.+|
T Consensus       139 ~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAW  184 (318)
T KOG0530|consen  139 MLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAW  184 (318)
T ss_pred             HHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchh
Confidence            4444444444444444444444445554444444444443333333

>PLN02448 UDP-glycosyltransferase family protein

Probab=97.53  E-value=0.0016  Score=72.56  Aligned_cols=96  Identities=19%  Similarity=0.300  Sum_probs=71.3

Q ss_pred             CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCc
Q 002729          712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD  791 (887)
Q Consensus       712 ~~~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d  791 (887)
                      ..++|.||+......++.++....-|+..+.-.+|.+..+..   .+.+      +..+|+++.++.|..+.|. ...+.
T Consensus       274 ~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~~~---~~~~------~~~~~~~v~~w~pQ~~iL~-h~~v~  343 (459)
T PLN02448        274 GSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGEAS---RLKE------ICGDMGLVVPWCDQLKVLC-HSSVG  343 (459)
T ss_pred             CceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcCchh---hHhH------hccCCEEEeccCCHHHHhc-cCccc
Confidence            458999999988888999988888898888777875543211   1111      1246788889999888775 23444


Q ss_pred             EEecCCCCCCchhHHHHHHhCCceeeecc
Q 002729          792 LFLDTPLCNAHTTGTDILWAGLPMITLPL  820 (887)
Q Consensus       792 ~~ld~~~~~g~~t~~eal~~gvPvvt~~g  820 (887)
                      .|+   ..+|.+|++||+++|||+|+++-
T Consensus       344 ~fv---tHgG~nS~~eal~~GvP~l~~P~  369 (459)
T PLN02448        344 GFW---THCGWNSTLEAVFAGVPMLTFPL  369 (459)
T ss_pred             eEE---ecCchhHHHHHHHcCCCEEeccc
Confidence            575   57788999999999999999874

>PLN02167 UDP-glycosyltransferase family protein

Probab=97.52  E-value=0.0011  Score=74.20  Aligned_cols=102  Identities=21%  Similarity=0.279  Sum_probs=73.3

Q ss_pred             CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCChhh----HHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhc
Q 002729          712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAG----EMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS  787 (887)
Q Consensus       712 ~~~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~----~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~  787 (887)
                      ..++|.||+....+.++.++-.+.-|+..+...||.++.+...    ...+-+-+.+. + .+|..+.++.|+.+.+. .
T Consensus       280 ~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~flw~~~~~~~~~~~~~~~lp~~~~er-~-~~rg~v~~w~PQ~~iL~-h  356 (475)
T PLN02167        280 SSVVFLCFGSLGSLPAPQIKEIAQALELVGCRFLWSIRTNPAEYASPYEPLPEGFMDR-V-MGRGLVCGWAPQVEILA-H  356 (475)
T ss_pred             CceEEEeecccccCCHHHHHHHHHHHHhCCCcEEEEEecCcccccchhhhCChHHHHH-h-ccCeeeeccCCHHHHhc-C
Confidence            4589999999888888888888999999998889987643210    11121111111 2 25566779999887774 3


Q ss_pred             cCCcEEecCCCCCCchhHHHHHHhCCceeeec
Q 002729          788 SLADLFLDTPLCNAHTTGTDILWAGLPMITLP  819 (887)
Q Consensus       788 ~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~  819 (887)
                      ..++.||   ..+|-+|++||+++|||+|+++
T Consensus       357 ~~vg~fv---tH~G~nS~~Eal~~GvP~l~~P  385 (475)
T PLN02167        357 KAIGGFV---SHCGWNSVLESLWFGVPIATWP  385 (475)
T ss_pred             cccCeEE---eeCCcccHHHHHHcCCCEEecc
Confidence            4467776   5777889999999999999986

>PLN03015 UDP-glucosyl transferase

Probab=97.51  E-value=0.0015  Score=71.72  Aligned_cols=104  Identities=18%  Similarity=0.217  Sum_probs=75.6

Q ss_pred             CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCChh-----------hHHHHHHHHHHcCCCCCcEEEcCCCCc
Q 002729          712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA-----------GEMRLRAYAVAQGVQPDQIIFTDVAMK  780 (887)
Q Consensus       712 ~~~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~-----------~~~~l~~~~~~~g~~~~r~~~~~~~~~  780 (887)
                      ..++|.||+....++++.++-.+.-|...+...||.+..+..           ..+.+-+-|.+. +....+++.++.|.
T Consensus       267 ~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~~~~~~~~lp~~f~er-~~~rGl~v~~W~PQ  345 (470)
T PLN03015        267 RSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRPASYLGASSSDDDQVSASLPEGFLDR-TRGVGLVVTQWAPQ  345 (470)
T ss_pred             CCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecCccccccccccccchhhcCChHHHHh-hccCceEEEecCCH
Confidence            459999999999999999999999999999999999863210           011111111111 11112678899999


Q ss_pred             HHHHHhccCCcEEecCCCCCCchhHHHHHHhCCceeeecc
Q 002729          781 QEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPL  820 (887)
Q Consensus       781 ~~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g  820 (887)
                      .+.+. ...+..|+   ...|-+|++||+++|||+|+++-
T Consensus       346 ~~vL~-h~~vg~fv---tH~GwnS~~Eai~~GvP~v~~P~  381 (470)
T PLN03015        346 VEILS-HRSIGGFL---SHCGWSSVLESLTKGVPIVAWPL  381 (470)
T ss_pred             HHHhc-cCccCeEE---ecCCchhHHHHHHcCCCEEeccc
Confidence            88875 35566675   57788999999999999999873

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.50  E-value=0.012  Score=61.71  Aligned_cols=165  Identities=18%  Similarity=0.065  Sum_probs=76.0

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhh----CCChHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHhhCCCCHHHHHHHH
Q 002729          139 SNLGNLMKAQGLVQEAYSCYLEALRI----QPTFAIAWSNLAGLFME---SGDLNRALQYYKE-AVKLKPTFPDAYLNLG  210 (887)
Q Consensus       139 ~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~-~l~~~~~~~~~~~~l~  210 (887)
                      ..+-..|....+|+.-+++.+.+-..    -++...+...+|.++.+   .|+.++|+..+.. .....+.+++++..+|
T Consensus       145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G  224 (374)
T PF13281_consen  145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG  224 (374)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence            33334444444444444444444333    22233333444444444   4555555555544 2233334444454444


Q ss_pred             HHHHHc---------CChHHHHHHHHHHHhhCCChhHHhhHHHHHHHcCChHHHHHHHHHHH--------h----cCCCc
Q 002729          211 NVYKAL---------GMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAI--------G----CDPRF  269 (887)
Q Consensus       211 ~~~~~~---------g~~~~A~~~~~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~~l--------~----~~p~~  269 (887)
                      .+|...         ...++|+..|.++.+..|+...-.+++.++...|...+...-+++..        +    ..-.+
T Consensus       225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~d  304 (374)
T PF13281_consen  225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQD  304 (374)
T ss_pred             HHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccccc
Confidence            444321         12455666666666666554444455555544443222221111111        0    01122


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 002729          270 LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH  303 (887)
Q Consensus       270 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  303 (887)
                      ...+..++.+..-.|++++|.+.++++++..|..
T Consensus       305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~  338 (374)
T PF13281_consen  305 YWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA  338 (374)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence            2334455555666677777777777777665544

>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule

Probab=97.50  E-value=0.0012  Score=75.42  Aligned_cols=138  Identities=12%  Similarity=0.278  Sum_probs=90.9

Q ss_pred             CCcEEEEecCCCCCCCH-HHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccC
Q 002729          711 EDKFIFACFNQLYKMDP-EIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSL  789 (887)
Q Consensus       711 ~~~~~~~~~~~~~k~~~-~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~  789 (887)
                      ++.++|.||+...+..| +..+...+.+++.|...||-......  ..         + ++.+.+..++|..+.|+ ...
T Consensus       275 ~~~vv~vsfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~~~--~~---------l-~~n~~~~~W~PQ~~lL~-hp~  341 (500)
T PF00201_consen  275 KKGVVYVSFGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGEPP--EN---------L-PKNVLIVKWLPQNDLLA-HPR  341 (500)
T ss_dssp             TTEEEEEE-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCSHG--CH---------H-HTTEEEESS--HHHHHT-STT
T ss_pred             CCCEEEEecCcccchhHHHHHHHHHHHHhhCCCccccccccccc--cc---------c-cceEEEeccccchhhhh-ccc
Confidence            35689999999876444 44888899999999988887654221  11         2 46788999999888875 556


Q ss_pred             CcEEecCCCCCCchhHHHHHHhCCceeeec--ccchhhhhHHHHHHhcCCCCcccc---CCHHHHHHHHHHHhcCHHHHH
Q 002729          790 ADLFLDTPLCNAHTTGTDILWAGLPMITLP--LEKMATRVAGSLCLATGLGEEMIV---NSMKEYEERAVSLALDRQKLQ  864 (887)
Q Consensus       790 ~d~~ld~~~~~g~~t~~eal~~gvPvvt~~--g~~~~~r~~~~~l~~~g~~~~~~~---~~~~~y~~~a~~l~~d~~~~~  864 (887)
                      +++|+   ..+|-+|+.||+++|||+|++|  ||.+..   +..+...|... .+-   -+.++..+...++..|+..++
T Consensus       342 v~~fi---tHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~n---a~~~~~~G~g~-~l~~~~~~~~~l~~ai~~vl~~~~y~~  414 (500)
T PF00201_consen  342 VKLFI---THGGLNSTQEALYHGVPMLGIPLFGDQPRN---AARVEEKGVGV-VLDKNDLTEEELRAAIREVLENPSYKE  414 (500)
T ss_dssp             EEEEE---ES--HHHHHHHHHCT--EEE-GCSTTHHHH---HHHHHHTTSEE-EEGGGC-SHHHHHHHHHHHHHSHHHHH
T ss_pred             ceeee---eccccchhhhhhhccCCccCCCCcccCCcc---ceEEEEEeeEE-EEEecCCcHHHHHHHHHHHHhhhHHHH
Confidence            78886   5777899999999999999987  343322   23355567644 222   267888888888888987666


Q ss_pred             HHHH
Q 002729          865 ALTN  868 (887)
Q Consensus       865 ~~~~  868 (887)
                      +.++
T Consensus       415 ~a~~  418 (500)
T PF00201_consen  415 NAKR  418 (500)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6553

This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.49  E-value=0.13  Score=56.61  Aligned_cols=78  Identities=21%  Similarity=0.243  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002729          205 AYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVG  284 (887)
Q Consensus       205 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g  284 (887)
                      ++.++|..+..+..+++|.++|.+.-..       .+.+.+++...++++-..+.    ..-|++.+..-.++..+...|
T Consensus       798 A~r~ig~~fa~~~~We~A~~yY~~~~~~-------e~~~ecly~le~f~~LE~la----~~Lpe~s~llp~~a~mf~svG  866 (1189)
T KOG2041|consen  798 AFRNIGETFAEMMEWEEAAKYYSYCGDT-------ENQIECLYRLELFGELEVLA----RTLPEDSELLPVMADMFTSVG  866 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccch-------HhHHHHHHHHHhhhhHHHHH----HhcCcccchHHHHHHHHHhhc
Confidence            5555555555555555555555543221       12333444444443322222    222344444445555555555


Q ss_pred             CHHHHHHHH
Q 002729          285 RVDEAIQCY  293 (887)
Q Consensus       285 ~~~~A~~~~  293 (887)
                      .-++|.+.|
T Consensus       867 MC~qAV~a~  875 (1189)
T KOG2041|consen  867 MCDQAVEAY  875 (1189)
T ss_pred             hHHHHHHHH
Confidence            555555444

>PLN02207 UDP-glycosyltransferase

Probab=97.48  E-value=0.0014  Score=72.26  Aligned_cols=102  Identities=18%  Similarity=0.310  Sum_probs=76.6

Q ss_pred             CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCChh-hHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCC
Q 002729          712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA-GEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLA  790 (887)
Q Consensus       712 ~~~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~-~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~  790 (887)
                      +.++|.||+....+..+.++..+.-+...+...||.++.+.. ..+.+-+-+.+. + .+|+.+.++.|+.+.+.- ..+
T Consensus       275 ~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~~r~~~~~~~~~lp~~f~er-~-~~~g~i~~W~PQ~~IL~H-~~v  351 (468)
T PLN02207        275 ASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWSLRTEEVTNDDLLPEGFLDR-V-SGRGMICGWSPQVEILAH-KAV  351 (468)
T ss_pred             CcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEEEeCCCccccccCCHHHHhh-c-CCCeEEEEeCCHHHHhcc-ccc
Confidence            569999999999999999999999999999999998874221 011121222221 2 467777799999888753 456


Q ss_pred             cEEecCCCCCCchhHHHHHHhCCceeeec
Q 002729          791 DLFLDTPLCNAHTTGTDILWAGLPMITLP  819 (887)
Q Consensus       791 d~~ld~~~~~g~~t~~eal~~gvPvvt~~  819 (887)
                      ..|+   ...|-++++||+++|||+|+++
T Consensus       352 g~Fv---TH~GwnS~~Eai~~GVP~l~~P  377 (468)
T PLN02207        352 GGFV---SHCGWNSIVESLWFGVPIVTWP  377 (468)
T ss_pred             ceee---ecCccccHHHHHHcCCCEEecC
Confidence            6675   5777889999999999999987

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.48  E-value=0.00012  Score=47.66  Aligned_cols=32  Identities=47%  Similarity=0.662  Sum_probs=17.6

Q ss_pred             HHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHH
Q 002729          395 YIRAITIRPTMAEAHANLASAYKDSGHVEAAI  426 (887)
Q Consensus       395 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  426 (887)
                      |+++++++|+++.+|+++|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            44555555555555555555555555555553

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.47  E-value=0.034  Score=60.28  Aligned_cols=148  Identities=13%  Similarity=0.146  Sum_probs=88.7

Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----CChHHHHhHHHHHHHcCChhHHHHHHHHHHhcc-CCC--ch
Q 002729          267 PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP----SHPQALTNLGNIYMEWNMLPAAASYYKATLAVT-TGL--SA  339 (887)
Q Consensus       267 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~  339 (887)
                      ......|...+.+..+.|+++.|...+.++....+    ..+.+....+.+....|+..+|+..++..+... ...  ..
T Consensus       143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~  222 (352)
T PF02259_consen  143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI  222 (352)
T ss_pred             hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence            34456777888888888888888888888776542    245677777888888888888888887777621 111  00


Q ss_pred             hHhhHHHHHHH--cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCCCcHHHHHH
Q 002729          340 PFNNLAVIYKQ--QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEI------GRVTDAIQDYIRAITIRPTMAEAHAN  411 (887)
Q Consensus       340 ~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~  411 (887)
                      ....+......  ............     ......++..+|......      +..+++.+.|.++.+.+|+...+|+.
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~  297 (352)
T PF02259_consen  223 SNAELKSGLLESLEVISSTNLDKES-----KELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHS  297 (352)
T ss_pred             cHHHHhhccccccccccccchhhhh-----HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHH
Confidence            00000000000  000000000000     001134566667666666      78888888999999888888888888


Q ss_pred             HHHHHHhC
Q 002729          412 LASAYKDS  419 (887)
Q Consensus       412 la~~~~~~  419 (887)
                      +|..+.+.
T Consensus       298 ~a~~~~~~  305 (352)
T PF02259_consen  298 WALFNDKL  305 (352)
T ss_pred             HHHHHHHH
Confidence            88876654

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional

Probab=97.47  E-value=0.0024  Score=75.46  Aligned_cols=153  Identities=14%  Similarity=0.122  Sum_probs=106.2

Q ss_pred             CcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCce--EEEe--cCC-----hhhHHHHHHHHH--------HcCCC-CCc
Q 002729          712 DKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSA--LWLL--RFP-----AAGEMRLRAYAV--------AQGVQ-PDQ  771 (887)
Q Consensus       712 ~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~--l~~~--~~~-----~~~~~~l~~~~~--------~~g~~-~~r  771 (887)
                      +..++.+..++  .|..+.-+.+|.++|+..|+-+  ++++  ..+     +. -+.++..+.        ..|-. -.=
T Consensus       362 g~kiIlgVDRLD~~KGI~~kL~AfE~fL~~~Pe~r~kVVLvQIa~psr~~v~e-Y~~l~~~V~~~V~rIN~~fg~~~w~P  440 (934)
T PLN03064        362 GRKVMLGVDRLDMIKGIPQKILAFEKFLEENPEWRDKVVLLQIAVPTRTDVPE-YQKLTSQVHEIVGRINGRFGTLTAVP  440 (934)
T ss_pred             CceEEEEeeccccccCHHHHHHHHHHHHHhCccccCCEEEEEEcCCCCCCcHH-HHHHHHHHHHHHHHHhhhccCCCcce
Confidence            45678888887  4999999999999999999853  4444  221     22 233443332        23321 112


Q ss_pred             EEEcC-CCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHh-----CCceeeecccchhhhhHHH-HHHhcCCCCcccc
Q 002729          772 IIFTD-VAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWA-----GLPMITLPLEKMATRVAGS-LCLATGLGEEMIV  843 (887)
Q Consensus       772 ~~~~~-~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~-----gvPvvt~~g~~~~~r~~~~-~l~~~g~~~~~~~  843 (887)
                      |++.. .++.++++++|..+||+|.|.-..| ++++.|+++|     |++|++       +-.|++ .|   |-.. +++
T Consensus       441 v~~~~~~l~~eeL~AlY~~ADV~lvTslrDGmNLva~Eyva~~~~~~GvLILS-------EfaGaa~~L---~~~A-llV  509 (934)
T PLN03064        441 IHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDSKKGVLILS-------EFAGAAQSL---GAGA-ILV  509 (934)
T ss_pred             EEEeccCCCHHHHHHHHHhCCEEEeCccccccCchHHHHHHhhcCCCCCeEEe-------CCCchHHHh---CCce-EEE
Confidence            55554 4788999999999999999988888 9999999999     677772       333332 22   3223 343


Q ss_pred             --CCHHHHHHHHHHHhc-CHHHHHHHHHHHHhhccc
Q 002729          844 --NSMKEYEERAVSLAL-DRQKLQALTNKLKSVRLT  876 (887)
Q Consensus       844 --~~~~~y~~~a~~l~~-d~~~~~~~~~~~~~~~~~  876 (887)
                        .|.++..+...+.++ +++.+++..+++++....
T Consensus       510 NP~D~~~vA~AI~~AL~M~~~Er~~r~~~~~~~V~~  545 (934)
T PLN03064        510 NPWNITEVAASIAQALNMPEEEREKRHRHNFMHVTT  545 (934)
T ss_pred             CCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccc
Confidence              688888887777777 888888888888877543

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.46  E-value=0.014  Score=57.95  Aligned_cols=161  Identities=17%  Similarity=0.101  Sum_probs=102.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH-HHHHHHHHHH
Q 002729           67 AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLV-DAHSNLGNLM  145 (887)
Q Consensus        67 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~  145 (887)
                      .+.-+..+.-....|++.+|...|..++...|++.++...++.+|...|+.+.|...+...-....... .........+
T Consensus       134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll  213 (304)
T COG3118         134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELL  213 (304)
T ss_pred             HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence            344455566667788888888888888888888888888888888888888888777765432222111 1111122333


Q ss_pred             HHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCChHHHH
Q 002729          146 KAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKP--TFPDAYLNLGNVYKALGMPQEAI  223 (887)
Q Consensus       146 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~--~~~~~~~~l~~~~~~~g~~~~A~  223 (887)
                      .+.....+. ..+++.+..+|++..+-+.++..+...|+.++|.+.+-.+++.+.  .+..+...+..++...|..+.+.
T Consensus       214 ~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~  292 (304)
T COG3118         214 EQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLV  292 (304)
T ss_pred             HHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHH
Confidence            333333322 224445566788888888888888888888888888877777643  34456677777777777555554


Q ss_pred             HHHHH
Q 002729          224 MCYQR  228 (887)
Q Consensus       224 ~~~~~  228 (887)
                      ..+++
T Consensus       293 ~~~RR  297 (304)
T COG3118         293 LAYRR  297 (304)
T ss_pred             HHHHH
Confidence            44443

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.46  E-value=0.21  Score=52.60  Aligned_cols=417  Identities=11%  Similarity=0.006  Sum_probs=226.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 002729           35 NLLLLGAIYYQLHDYDMCIARNEEALRLEPRFA-----ECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLAS  109 (887)
Q Consensus        35 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  109 (887)
                      .+...|.++.+++++.+|.++|.++.+...+.+     +.+..+....+-+++.+.-.......-+..|+.+....-.+.
T Consensus         8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L   87 (549)
T PF07079_consen    8 LLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKAL   87 (549)
T ss_pred             HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence            455678889999999999999999987655442     344444444455667777666666666778888888888889


Q ss_pred             HHHHcCChHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-C----ChH
Q 002729          110 AYMRKGRLNEAAQCCRQALALNPL---------------LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ-P----TFA  169 (887)
Q Consensus       110 ~~~~~g~~~~A~~~~~~~l~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p----~~~  169 (887)
                      ..++.+.+.+|++.+......-..               +...-...+.++...|++.++...+++.+..- +    -+.
T Consensus        88 ~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~  167 (549)
T PF07079_consen   88 VAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNS  167 (549)
T ss_pred             HHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccH
Confidence            999999999999988776544111               11122346788899999999999999887642 2    344


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHc-----C----C------------------hHH
Q 002729          170 IAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF-PDAYLNLGNVYKAL-----G----M------------------PQE  221 (887)
Q Consensus       170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~l~~~~~~~-----g----~------------------~~~  221 (887)
                      ..+..+...+.+        .+|-++.+....+ ..-|+.++..|.+.     .    .                  +++
T Consensus       168 d~yd~~vlmlsr--------SYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e  239 (549)
T PF07079_consen  168 DMYDRAVLMLSR--------SYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKE  239 (549)
T ss_pred             HHHHHHHHHHhH--------HHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHh
Confidence            444443322211        1111111111000 00111111111111     0    0                  001


Q ss_pred             HHHHHHHHHh------hCCC-hhHHhhHHHHHHHcCChHHHHHHHHHHHhc-----CCCcHHHHHHHHHHHHHcCCHHHH
Q 002729          222 AIMCYQRAVQ------TRPN-AIAFGNLASTYYERGQADMAILYYKQAIGC-----DPRFLEAYNNLGNALKDVGRVDEA  289 (887)
Q Consensus       222 A~~~~~~~~~------~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~la~~~~~~g~~~~A  289 (887)
                      -+..+-++++      .+|+ ......+..-..  .+.+++....+.....     ...-......+-....+.++..+|
T Consensus       240 ~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~--~~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a  317 (549)
T PF07079_consen  240 RLPPLMQILENWENFYVHPNYDLVIEPLKQQFM--SDPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEA  317 (549)
T ss_pred             hccHHHHHHHHHHhhccCCchhHHHHHHHHHHh--cChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            1111111111      1222 111111111111  1334444444333221     111223444445556677888889


Q ss_pred             HHHHHHHHhcCCCChHHHHh------HHHHHH-HcCChh---HHHHHHHHHHhccCCCc---hhHhhHHHHHHHcCC-HH
Q 002729          290 IQCYNQCLSLQPSHPQALTN------LGNIYM-EWNMLP---AAASYYKATLAVTTGLS---APFNNLAVIYKQQGN-YA  355 (887)
Q Consensus       290 ~~~~~~al~~~p~~~~~~~~------l~~~~~-~~g~~~---~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~g~-~~  355 (887)
                      .+++.-....+|+.......      +-++.+ .-..+.   .=+.+++..-..+-+..   .-...-|.-+.+.|+ -+
T Consensus       318 ~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~de  397 (549)
T PF07079_consen  318 KQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDE  397 (549)
T ss_pred             HHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccH
Confidence            88888887788876421111      111111 111111   11222333222222221   123334555666676 88


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHh---------cCC---CcHHHHHHHHH--HHHhC
Q 002729          356 DAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQ--DYIRAIT---------IRP---TMAEAHANLAS--AYKDS  419 (887)
Q Consensus       356 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~--~~~~al~---------~~p---~~~~~~~~la~--~~~~~  419 (887)
                      +|+.+++.+++..+.+...-+..-...  ...|.+|+.  .+-+.+.         +.|   .+.+..+.|+.  .+...
T Consensus       398 kalnLLk~il~ft~yD~ec~n~v~~fv--Kq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysq  475 (549)
T PF07079_consen  398 KALNLLKLILQFTNYDIECENIVFLFV--KQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQ  475 (549)
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHH--HHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhc
Confidence            999999999999887765433221111  112222221  1111111         122   23455555554  57789


Q ss_pred             CCHHHHHHHHHHHHHcCCCChHHHHHHHHHhhhcCChhhHhHHHH
Q 002729          420 GHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFS  464 (887)
Q Consensus       420 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~  464 (887)
                      |++.++.-+-.-..++.| ++.++..++.++....++++|.+.+.
T Consensus       476 gey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~  519 (549)
T PF07079_consen  476 GEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQ  519 (549)
T ss_pred             ccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            999999999999999999 78888888888888777777766554

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.45  E-value=0.0002  Score=75.19  Aligned_cols=102  Identities=23%  Similarity=0.286  Sum_probs=90.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHH
Q 002729          344 LAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVE  423 (887)
Q Consensus       344 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  423 (887)
                      -+.-...-+.++.|+..|.++++++|+++..+.+++..+.+.+++..|+..+.++++.+|....+|+..|.++.+.+++.
T Consensus        10 ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~   89 (476)
T KOG0376|consen   10 EANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFK   89 (476)
T ss_pred             HHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHH
Confidence            34556677889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCChHHHHH
Q 002729          424 AAIKSYKQALLLRPDFPEATCN  445 (887)
Q Consensus       424 ~A~~~~~~al~~~p~~~~~~~~  445 (887)
                      +|...|++...+.|+++.+.-.
T Consensus        90 ~A~~~l~~~~~l~Pnd~~~~r~  111 (476)
T KOG0376|consen   90 KALLDLEKVKKLAPNDPDATRK  111 (476)
T ss_pred             HHHHHHHHhhhcCcCcHHHHHH
Confidence            9999999999999998876544

>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional

Probab=97.45  E-value=0.0026  Score=71.49  Aligned_cols=139  Identities=14%  Similarity=0.231  Sum_probs=96.3

Q ss_pred             cEEEEecCCCC---CCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccC
Q 002729          713 KFIFACFNQLY---KMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSL  789 (887)
Q Consensus       713 ~~~~~~~~~~~---k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~  789 (887)
                      .++|.+|+...   +..++.++...+.+++.|.-.+|-.+.... .         .++ +++|.+.+++|..+.++ ...
T Consensus       297 g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~~-~---------~~~-p~Nv~i~~w~Pq~~lL~-hp~  364 (507)
T PHA03392        297 GVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEVE-A---------INL-PANVLTQKWFPQRAVLK-HKN  364 (507)
T ss_pred             cEEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCcC-c---------ccC-CCceEEecCCCHHHHhc-CCC
Confidence            47888888765   457889999888888999755554432111 0         244 68999999999887773 366


Q ss_pred             CcEEecCCCCCCchhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCcccc---CCHHHHHHHHHHHhcCHHHHHHH
Q 002729          790 ADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV---NSMKEYEERAVSLALDRQKLQAL  866 (887)
Q Consensus       790 ~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~---~~~~~y~~~a~~l~~d~~~~~~~  866 (887)
                      +++|+   ..+|..|+.||++.|||+|.++--.=.-+ -+..+...|... .+-   -+.++..+...++.+|+..+++.
T Consensus       365 v~~fI---tHGG~~s~~Eal~~GvP~v~iP~~~DQ~~-Na~rv~~~G~G~-~l~~~~~t~~~l~~ai~~vl~~~~y~~~a  439 (507)
T PHA03392        365 VKAFV---TQGGVQSTDEAIDALVPMVGLPMMGDQFY-NTNKYVELGIGR-ALDTVTVSAAQLVLAIVDVIENPKYRKNL  439 (507)
T ss_pred             CCEEE---ecCCcccHHHHHHcCCCEEECCCCccHHH-HHHHHHHcCcEE-EeccCCcCHHHHHHHHHHHhCCHHHHHHH
Confidence            99996   67788999999999999999874321111 222345557654 332   26778777777888998777665


Q ss_pred             HH
Q 002729          867 TN  868 (887)
Q Consensus       867 ~~  868 (887)
                      ++
T Consensus       440 ~~  441 (507)
T PHA03392        440 KE  441 (507)
T ss_pred             HH
Confidence            53

>PLN02555 limonoid glucosyltransferase

Probab=97.45  E-value=0.0025  Score=70.73  Aligned_cols=152  Identities=13%  Similarity=0.173  Sum_probs=95.3

Q ss_pred             CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCChh----hHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhc
Q 002729          712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA----GEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS  787 (887)
Q Consensus       712 ~~~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~----~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~  787 (887)
                      ..++|.||+....+.++.+.-.+.-+...+...||.++.+..    ....+-+-+.+ .+ .+|+.+.++.|..+.+. .
T Consensus       277 ~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~~~~~~~~~~~~~~lp~~~~~-~~-~~~g~v~~W~PQ~~iL~-H  353 (480)
T PLN02555        277 SSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVMRPPHKDSGVEPHVLPEEFLE-KA-GDKGKIVQWCPQEKVLA-H  353 (480)
T ss_pred             CceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEEecCcccccchhhcCChhhhh-hc-CCceEEEecCCHHHHhC-C
Confidence            348999999988888888888888888888888888763211    01112222222 23 47788889999877664 4


Q ss_pred             cCCcEEecCCCCCCchhHHHHHHhCCceeeecc--cchhhhhHHHHHHhcCCCCccc--------cCCHHHHHHHHHHHh
Q 002729          788 SLADLFLDTPLCNAHTTGTDILWAGLPMITLPL--EKMATRVAGSLCLATGLGEEMI--------VNSMKEYEERAVSLA  857 (887)
Q Consensus       788 ~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g--~~~~~r~~~~~l~~~g~~~~~~--------~~~~~~y~~~a~~l~  857 (887)
                      ..+..|+   ..+|-+|++||+++|||+|+++-  +.+..  +.-+...+|+.- -+        .-+.++..+...++.
T Consensus       354 ~~v~~Fv---tH~G~nS~~Eai~~GVP~l~~P~~~DQ~~N--a~~~~~~~gvGv-~l~~~~~~~~~v~~~~v~~~v~~vm  427 (480)
T PLN02555        354 PSVACFV---THCGWNSTMEALSSGVPVVCFPQWGDQVTD--AVYLVDVFKTGV-RLCRGEAENKLITREEVAECLLEAT  427 (480)
T ss_pred             CccCeEE---ecCCcchHHHHHHcCCCEEeCCCccccHHH--HHHHHHHhCceE-EccCCccccCcCcHHHHHHHHHHHh
Confidence            6688886   57789999999999999999863  33321  111122224443 22        115666665555666


Q ss_pred             cCHHHHHHHHHHHHhh
Q 002729          858 LDRQKLQALTNKLKSV  873 (887)
Q Consensus       858 ~d~~~~~~~~~~~~~~  873 (887)
                      .+++ -+.+|++.++.
T Consensus       428 ~~~~-g~~~r~ra~~l  442 (480)
T PLN02555        428 VGEK-AAELKQNALKW  442 (480)
T ss_pred             cCch-HHHHHHHHHHH
Confidence            5532 34555555543

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.42  E-value=0.076  Score=60.76  Aligned_cols=80  Identities=23%  Similarity=0.211  Sum_probs=47.1

Q ss_pred             hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHc---CChhHHH
Q 002729          252 ADMAILYYKQAIGCDPRFLEAYNNLGNALKDV----GRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEW---NMLPAAA  324 (887)
Q Consensus       252 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---g~~~~A~  324 (887)
                      .+.+...+.++..  ..+..+...++.+|..-    .+++.|...|.++....   ....+++|.++..-   ..+..|.
T Consensus       455 ~~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~  529 (552)
T KOG1550|consen  455 LERAFSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAK  529 (552)
T ss_pred             hhHHHHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHH
Confidence            3444444444432  23444566666666543    34777777777776655   66777777776541   1256777


Q ss_pred             HHHHHHHhccCC
Q 002729          325 SYYKATLAVTTG  336 (887)
Q Consensus       325 ~~~~~~~~~~~~  336 (887)
                      .++.++.+.+..
T Consensus       530 ~~~~~~~~~~~~  541 (552)
T KOG1550|consen  530 RYYDQASEEDSR  541 (552)
T ss_pred             HHHHHHHhcCch
Confidence            777777665443

>PLN02152 indole-3-acetate beta-glucosyltransferase

Probab=97.42  E-value=0.0032  Score=69.31  Aligned_cols=103  Identities=14%  Similarity=0.258  Sum_probs=75.5

Q ss_pred             CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCChh--------hHHHH--HHHHHHcCCCCCcEEEcCCCCcH
Q 002729          712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA--------GEMRL--RAYAVAQGVQPDQIIFTDVAMKQ  781 (887)
Q Consensus       712 ~~~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~--------~~~~l--~~~~~~~g~~~~r~~~~~~~~~~  781 (887)
                      +.++|.||+....++.+.++-.+.-|...|...||.+..+..        ....+  -+-+.+. + .+|..+.++.|..
T Consensus       261 ~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~-~-~~~g~v~~W~PQ~  338 (455)
T PLN02152        261 SSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKLNREAKIEGEEETEIEKIAGFRHE-L-EEVGMIVSWCSQI  338 (455)
T ss_pred             CceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCcccccccccccccccccchhHHHh-c-cCCeEEEeeCCHH
Confidence            459999999999999999999999999999999998864211        00011  1122221 3 5777778999988


Q ss_pred             HHHHhccCCcEEecCCCCCCchhHHHHHHhCCceeeecc
Q 002729          782 EHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPL  820 (887)
Q Consensus       782 ~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g  820 (887)
                      +.|. ...+-.|+   ..+|.+|++||+++|||+|+++-
T Consensus       339 ~iL~-h~~vg~fv---tH~G~nS~~Ea~~~GvP~l~~P~  373 (455)
T PLN02152        339 EVLR-HRAVGCFV---THCGWSSSLESLVLGVPVVAFPM  373 (455)
T ss_pred             HHhC-CcccceEE---eeCCcccHHHHHHcCCCEEeccc
Confidence            7663 23344565   57889999999999999999873

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.39  E-value=0.00017  Score=46.90  Aligned_cols=32  Identities=28%  Similarity=0.514  Sum_probs=23.6

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002729          361 YNEVLRIDPLAADGLVNRGNTYKEIGRVTDAI  392 (887)
Q Consensus       361 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~  392 (887)
                      |+++++++|+++.+|+++|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            56777777777777777777777777777765

>PLN03007 UDP-glucosyltransferase family protein

Probab=97.39  E-value=0.0027  Score=71.22  Aligned_cols=104  Identities=18%  Similarity=0.192  Sum_probs=72.1

Q ss_pred             CCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCChhh---HHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhc
Q 002729          711 EDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAG---EMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS  787 (887)
Q Consensus       711 ~~~~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~---~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~  787 (887)
                      +..++|.||+....++..-+.-.+.-|...+...||.++.+...   ...+-+-+.+.-. +.+|++.++.|..+.|.- 
T Consensus       284 ~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~-~~g~~v~~w~PQ~~iL~h-  361 (482)
T PLN03007        284 PDSVIYLSFGSVASFKNEQLFEIAAGLEGSGQNFIWVVRKNENQGEKEEWLPEGFEERTK-GKGLIIRGWAPQVLILDH-  361 (482)
T ss_pred             CCceEEEeecCCcCCCHHHHHHHHHHHHHCCCCEEEEEecCCcccchhhcCCHHHHHHhc-cCCEEEecCCCHHHHhcc-
Confidence            34589999999988867666666666788888889988743210   1112222322222 467899999998876632 


Q ss_pred             cCCcEEecCCCCCCchhHHHHHHhCCceeeec
Q 002729          788 SLADLFLDTPLCNAHTTGTDILWAGLPMITLP  819 (887)
Q Consensus       788 ~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~  819 (887)
                      ..+..|+   ..+|-+|++||+++|||+|+++
T Consensus       362 ~~v~~fv---tH~G~nS~~Eal~~GVP~v~~P  390 (482)
T PLN03007        362 QATGGFV---THCGWNSLLEGVAAGLPMVTWP  390 (482)
T ss_pred             Cccceee---ecCcchHHHHHHHcCCCeeecc
Confidence            3344575   5777899999999999999987

>PLN02210 UDP-glucosyl transferase

Probab=97.38  E-value=0.0032  Score=69.75  Aligned_cols=138  Identities=13%  Similarity=0.209  Sum_probs=89.0

Q ss_pred             CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCc
Q 002729          712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD  791 (887)
Q Consensus       712 ~~~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d  791 (887)
                      ..++|.||+...+..++.++..+.-|+..+...+|.++.+.. ... ...+.+. +..+|.++.++.|..+.|.- ..+.
T Consensus       269 ~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~~~-~~~-~~~~~~~-~~~~~g~v~~w~PQ~~iL~h-~~vg  344 (456)
T PLN02210        269 SSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPKEK-AQN-VQVLQEM-VKEGQGVVLEWSPQEKILSH-MAIS  344 (456)
T ss_pred             CceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCCcc-ccc-hhhHHhh-ccCCCeEEEecCCHHHHhcC-cCcC
Confidence            458999999999999999999999999999888898764211 011 1112222 11255566799998887742 3455


Q ss_pred             EEecCCCCCCchhHHHHHHhCCceeeecc--cchhhhhHHHHHHh-cCCCCcccc-------CCHHHHHHHHHHHhcCH
Q 002729          792 LFLDTPLCNAHTTGTDILWAGLPMITLPL--EKMATRVAGSLCLA-TGLGEEMIV-------NSMKEYEERAVSLALDR  860 (887)
Q Consensus       792 ~~ld~~~~~g~~t~~eal~~gvPvvt~~g--~~~~~r~~~~~l~~-~g~~~~~~~-------~~~~~y~~~a~~l~~d~  860 (887)
                      .||   ..+|-+|++||++.|||+|+++-  +.+.   -+..+.. +|..- .+.       -+.++..+...++..|+
T Consensus       345 ~Fi---tH~G~nS~~Eai~~GVP~v~~P~~~DQ~~---na~~~~~~~g~G~-~l~~~~~~~~~~~~~l~~av~~~m~~~  416 (456)
T PLN02210        345 CFV---THCGWNSTIETVVAGVPVVAYPSWTDQPI---DARLLVDVFGIGV-RMRNDAVDGELKVEEVERCIEAVTEGP  416 (456)
T ss_pred             eEE---eeCCcccHHHHHHcCCCEEecccccccHH---HHHHHHHHhCeEE-EEeccccCCcCCHHHHHHHHHHHhcCc
Confidence            776   57778899999999999999973  3332   1222332 34432 221       25566555555555554

>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5

Probab=97.37  E-value=0.00088  Score=71.45  Aligned_cols=150  Identities=15%  Similarity=0.151  Sum_probs=93.0

Q ss_pred             CCCcEEEEecCCCCCCC-H----HHHHHHHHHHhhcCCceEEEecC-ChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHH
Q 002729          710 PEDKFIFACFNQLYKMD-P----EIFNTWCNILRRVPNSALWLLRF-PAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEH  783 (887)
Q Consensus       710 ~~~~~~~~~~~~~~k~~-~----~~~~~~~~il~~~p~~~l~~~~~-~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~  783 (887)
                      +.+.+++.++.+..... +    .+.++..++.+. ++..+++... .|.....+.+.+.+.    ++|.+.+.+++.+|
T Consensus       178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~-~~~~vi~~~hn~p~~~~~i~~~l~~~----~~v~~~~~l~~~~~  252 (346)
T PF02350_consen  178 APKPYILVTLHPVTNEDNPERLEQILEALKALAER-QNVPVIFPLHNNPRGSDIIIEKLKKY----DNVRLIEPLGYEEY  252 (346)
T ss_dssp             TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHH-TTEEEEEE--S-HHHHHHHHHHHTT-----TTEEEE----HHHH
T ss_pred             cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhc-CCCcEEEEecCCchHHHHHHHHhccc----CCEEEECCCCHHHH
Confidence            56778889999988777 5    444555555555 6665555443 355566776666554    29999999999999


Q ss_pred             HHhccCCcEEecCCCCCCchhHH-HHHHhCCceeeec--ccchhhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCH
Q 002729          784 IRRSSLADLFLDTPLCNAHTTGT-DILWAGLPMITLP--LEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDR  860 (887)
Q Consensus       784 ~~~~~~~d~~ld~~~~~g~~t~~-eal~~gvPvvt~~--g~~~~~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l~~d~  860 (887)
                      +.+++.+++++    -++| ++. ||.++|+|||++.  |+...+|..       |-+- +|..+.++..+.+.+...+.
T Consensus       253 l~ll~~a~~vv----gdSs-GI~eEa~~lg~P~v~iR~~geRqe~r~~-------~~nv-lv~~~~~~I~~ai~~~l~~~  319 (346)
T PF02350_consen  253 LSLLKNADLVV----GDSS-GIQEEAPSLGKPVVNIRDSGERQEGRER-------GSNV-LVGTDPEAIIQAIEKALSDK  319 (346)
T ss_dssp             HHHHHHESEEE----ESSH-HHHHHGGGGT--EEECSSS-S-HHHHHT-------TSEE-EETSSHHHHHHHHHHHHH-H
T ss_pred             HHHHhcceEEE----EcCc-cHHHHHHHhCCeEEEecCCCCCHHHHhh-------cceE-EeCCCHHHHHHHHHHHHhCh
Confidence            99999999998    6667 888 9999999999995  666666654       5555 66678888777777777774


Q ss_pred             HHHHHHHHHHHhhcccCCCCCcC
Q 002729          861 QKLQALTNKLKSVRLTCPLFDTA  883 (887)
Q Consensus       861 ~~~~~~~~~~~~~~~~~~l~d~~  883 (887)
                      +.+..+..      ...|..|+.
T Consensus       320 ~~~~~~~~------~~npYgdG~  336 (346)
T PF02350_consen  320 DFYRKLKN------RPNPYGDGN  336 (346)
T ss_dssp             HHHHHHHC------S--TT-SS-
T ss_pred             HHHHhhcc------CCCCCCCCc
Confidence            54444332      235666653

1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.

>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed

Probab=97.37  E-value=0.0032  Score=69.93  Aligned_cols=160  Identities=14%  Similarity=0.068  Sum_probs=96.0

Q ss_pred             CCCCCCCCCCcEEEEe-cCCC----CCCCHHHHHHHH-HHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcC
Q 002729          703 KRSDYGLPEDKFIFAC-FNQL----YKMDPEIFNTWC-NILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTD  776 (887)
Q Consensus       703 ~r~~~~l~~~~~~~~~-~~~~----~k~~~~~~~~~~-~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~  776 (887)
                      .|+++|++++..+.+- +++-    .++.|.++++-. +.++  ++.++++...++..++.+++.....++-+-+ ++.+
T Consensus       403 ~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~--~~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~-ii~~  479 (608)
T PRK01021        403 WKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLA--STHQLLVSSANPKYDHLILEVLQQEGCLHSH-IVPS  479 (608)
T ss_pred             HHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhc--cCeEEEEecCchhhHHHHHHHHhhcCCCCeE-EecC
Confidence            5778899766554443 2222    356777777765 1222  2455655444444345566655443310111 2223


Q ss_pred             CCCcHHHHHhccCCcEEecCCCCCCchhHHHHHHhCCceeee-cccchhhhhHHHHHH----hcC----------CCCcc
Q 002729          777 VAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITL-PLEKMATRVAGSLCL----ATG----------LGEEM  841 (887)
Q Consensus       777 ~~~~~~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~-~g~~~~~r~~~~~l~----~~g----------~~~~~  841 (887)
                      .    +-...++.||++|    -..||.|+|++-+|+|.|.. ....+.-.++--+++    -+|          .|| +
T Consensus       480 ~----~~~~~m~aaD~aL----aaSGTaTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPE-l  550 (608)
T PRK01021        480 Q----FRYELMRECDCAL----AKCGTIVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPE-F  550 (608)
T ss_pred             c----chHHHHHhcCeee----ecCCHHHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchh-h
Confidence            2    1246778899999    77899999999999996654 444333333333333    122          355 7


Q ss_pred             c----cCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcc
Q 002729          842 I----VNSMKEYEERAVSLALDRQKLQALTNKLKSVRL  875 (887)
Q Consensus       842 ~----~~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~~~  875 (887)
                      +    ..+++.-.+. +.+..|++.++++++.+++.+.
T Consensus       551 lqgQ~~~tpe~La~~-l~lL~d~~~r~~~~~~l~~lr~  587 (608)
T PRK01021        551 IGGKKDFQPEEVAAA-LDILKTSQSKEKQKDACRDLYQ  587 (608)
T ss_pred             cCCcccCCHHHHHHH-HHHhcCHHHHHHHHHHHHHHHH
Confidence            7    3466776654 7999999999999998887654

>PLN02534 UDP-glycosyltransferase

Probab=97.34  E-value=0.0035  Score=69.69  Aligned_cols=102  Identities=19%  Similarity=0.315  Sum_probs=73.0

Q ss_pred             CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCCh---hhHHHH-HHHHHHcCCCCCcEEEcCCCCcHHHHHhc
Q 002729          712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPA---AGEMRL-RAYAVAQGVQPDQIIFTDVAMKQEHIRRS  787 (887)
Q Consensus       712 ~~~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~---~~~~~l-~~~~~~~g~~~~r~~~~~~~~~~~~~~~~  787 (887)
                      ..++|.||+....++++-+.-.+.-|+..+...||.+..+.   .....+ -+-|.+. +...++++.++.|..+.+.  
T Consensus       283 ~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~r~~~~~~~~~~~~~p~gf~~~-~~~~g~~v~~w~pq~~iL~--  359 (491)
T PLN02534        283 RSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVIKTGEKHSELEEWLVKENFEER-IKGRGLLIKGWAPQVLILS--  359 (491)
T ss_pred             CceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCccccchhhhcCchhhHHh-hccCCeeccCCCCHHHHhc--
Confidence            45999999999888887777777888899999999987421   101111 1222222 2245688899999877663  


Q ss_pred             cCCcE--EecCCCCCCchhHHHHHHhCCceeeecc
Q 002729          788 SLADL--FLDTPLCNAHTTGTDILWAGLPMITLPL  820 (887)
Q Consensus       788 ~~~d~--~ld~~~~~g~~t~~eal~~gvPvvt~~g  820 (887)
                       ..++  |+   ..+|.+|++||+++|||+|+++.
T Consensus       360 -h~~v~~fv---tH~G~ns~~ea~~~GvP~v~~P~  390 (491)
T PLN02534        360 -HPAIGGFL---THCGWNSTIEGICSGVPMITWPL  390 (491)
T ss_pred             -CCccceEE---ecCccHHHHHHHHcCCCEEeccc
Confidence             3444  64   67789999999999999999975

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=97.30  E-value=0.16  Score=53.52  Aligned_cols=129  Identities=12%  Similarity=-0.025  Sum_probs=106.2

Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHH
Q 002729           42 IYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA  121 (887)
Q Consensus        42 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  121 (887)
                      -....|+.-.|-+-...++...|.++......+.+....|+|+.|...+..+-..-..-..+...+.......|++++|.
T Consensus       298 k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~  377 (831)
T PRK15180        298 KQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL  377 (831)
T ss_pred             HHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence            34567889999999999999999999999999999999999999998887665544444456666777888899999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHH
Q 002729          122 QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAI  170 (887)
Q Consensus       122 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  170 (887)
                      ...+-++...-++++....-+......|-++++...+++.+.++|....
T Consensus       378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~  426 (831)
T PRK15180        378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQS  426 (831)
T ss_pred             HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcc
Confidence            9999998887778887777777777888999999999999988775433

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=97.28  E-value=0.53  Score=53.49  Aligned_cols=417  Identities=12%  Similarity=0.026  Sum_probs=238.2

Q ss_pred             CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH---cCChHHHHHH
Q 002729           47 HDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMR---KGRLNEAAQC  123 (887)
Q Consensus        47 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~  123 (887)
                      +.-++=+..++.-+.+++.+...+..|..++.+.|++++-...-.++.++.|.++..|.....-...   .++..++...
T Consensus        93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~  172 (881)
T KOG0128|consen   93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEEL  172 (881)
T ss_pred             ccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHH
Confidence            3444556666777777888888888888899999999888888888888888888877766554432   3667778888


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHH-------HHcCChHHHHHHHHHHHhhCC-------ChHHHHHHHHHHHHHcCCHHHHH
Q 002729          124 CRQALALNPLLVDAHSNLGNLM-------KAQGLVQEAYSCYLEALRIQP-------TFAIAWSNLAGLFMESGDLNRAL  189 (887)
Q Consensus       124 ~~~~l~~~p~~~~~~~~la~~~-------~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~la~~~~~~g~~~~A~  189 (887)
                      |++++... +.+..|...+...       ...++++.-...|.++++.-.       .....+..+-..|...-..++.+
T Consensus       173 ~ekal~dy-~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~  251 (881)
T KOG0128|consen  173 FEKALGDY-NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVI  251 (881)
T ss_pred             HHHHhccc-ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            88887543 3444444444443       334567777778888776421       12334444555555555556667


Q ss_pred             HHHHHHHhhCCCCHHH----HHHHH---HHHHHcCChHHHHHHHHHHH-------hhCCC-hhHHhhHHHHHHHcCChHH
Q 002729          190 QYYKEAVKLKPTFPDA----YLNLG---NVYKALGMPQEAIMCYQRAV-------QTRPN-AIAFGNLASTYYERGQADM  254 (887)
Q Consensus       190 ~~~~~~l~~~~~~~~~----~~~l~---~~~~~~g~~~~A~~~~~~~~-------~~~p~-~~~~~~la~~~~~~g~~~~  254 (887)
                      .++...+... -+.++    +....   .......+++.|..-+.+.+       +..+. ...|..+.......|....
T Consensus       252 a~~~~el~~~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~r  330 (881)
T KOG0128|consen  252 ALFVRELKQP-LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVR  330 (881)
T ss_pred             HHHHHHHhcc-chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchH
Confidence            7777666543 22221    11111   11122334444444433332       22332 4556666777777788877


Q ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCC-hhHHHHHHHHHHh
Q 002729          255 AILYYKQAIGCDPRFLEAYNNLGNALK-DVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNM-LPAAASYYKATLA  332 (887)
Q Consensus       255 A~~~~~~~l~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~  332 (887)
                      -...++++....+.+...|...+...- .++-.+.+...+.++++.+|-...+|...-..+.+.+. ...-...+.+.+.
T Consensus       331 i~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls  410 (881)
T KOG0128|consen  331 IQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLS  410 (881)
T ss_pred             HHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHH
Confidence            777888887666666667766665442 23444555666677777776655555433333333222 2222333333332


Q ss_pred             ccCCCchhHhhHHHHHHHcC------CHHHHHHHHHHHHh-------c-CCCCHHHHHHHHHHHH-HcCCHHHHHHHHHH
Q 002729          333 VTTGLSAPFNNLAVIYKQQG------NYADAISCYNEVLR-------I-DPLAADGLVNRGNTYK-EIGRVTDAIQDYIR  397 (887)
Q Consensus       333 ~~~~~~~~~~~la~~~~~~g------~~~~A~~~~~~al~-------~-~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~  397 (887)
                      ..-.   .++.........+      +++.-.+.|+.+..       . -......+-..|.... .+++.+.+..++..
T Consensus       411 ~~~~---l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~  487 (881)
T KOG0128|consen  411 MTVE---LHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNF  487 (881)
T ss_pred             HHHH---HHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhc
Confidence            2111   1111111112222      33333344444433       2 1111233444444444 45788889988888


Q ss_pred             HHhcCCCcHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCh---HHHHHHHHHhhhcCChhhHhHHHHHHHH
Q 002729          398 AITIRPTMAE-AHANLASAYKDSGHVEAAIKSYKQALLLRPDFP---EATCNLLHTLQCVCSWEDRDRMFSEVEG  468 (887)
Q Consensus       398 al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~  468 (887)
                      .+.....+.. .|.....+-...|+...++.++++++..--++.   .++..+.....+.|.|+.......+...
T Consensus       488 imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~~~~~~p  562 (881)
T KOG0128|consen  488 IMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDLCPEKVLP  562 (881)
T ss_pred             cccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhhhHHhhcc
Confidence            8877666555 788888888889999999998888887533332   2233334445556677665555444443

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.26  E-value=0.13  Score=58.79  Aligned_cols=276  Identities=21%  Similarity=0.213  Sum_probs=149.5

Q ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhc-----CCCcHHHHHHHHHHHHHcC---
Q 002729           49 YDMCIARNEEALRLEPRFAECYGNMANAWKEK-----GDIDLAIRYYLVAIEL-----RPNFADAWSNLASAYMRKG---  115 (887)
Q Consensus        49 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g---  115 (887)
                      ...|.++++.+.+.  .+..+...+|.+|..-     .|.+.|+.+|+.+.+.     .-.++.+.+.+|.+|.+..   
T Consensus       228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~  305 (552)
T KOG1550|consen  228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE  305 (552)
T ss_pred             hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence            35677777666544  3455666666666543     5777777777777651     0113335556666666532   


Q ss_pred             --ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHc----CCHH
Q 002729          116 --RLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQG---LVQEAYSCYLEALRIQPTFAIAWSNLAGLFMES----GDLN  186 (887)
Q Consensus       116 --~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~  186 (887)
                        +.+.|..++.++-+.+  ++.+.+.+|.++....   ++..|.++|..+.+.  .+..+.+.++.+|..-    .+..
T Consensus       306 ~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~  381 (552)
T KOG1550|consen  306 KIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLE  381 (552)
T ss_pred             cccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHH
Confidence              4555666666665543  3445555555555443   345566666555432  2334444555444432    3455


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHhhCCChhHHhhHHHHHHHcCChHHHHHHHHHHHhc
Q 002729          187 RALQYYKEAVKLKPTFPDAYLNLGNVYKAL-GMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGC  265 (887)
Q Consensus       187 ~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  265 (887)
                      .|..++.++.+.+  .+.+...++..+... +.+..+...+....+.                                 
T Consensus       382 ~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~---------------------------------  426 (552)
T KOG1550|consen  382 LAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAEL---------------------------------  426 (552)
T ss_pred             HHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHh---------------------------------
Confidence            5555555555544  223233332222211 3343333333332221                                 


Q ss_pred             CCCcHH---HHH-HHHHHHHH----cCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHc----CChhHHHHHHHHHHhc
Q 002729          266 DPRFLE---AYN-NLGNALKD----VGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEW----NMLPAAASYYKATLAV  333 (887)
Q Consensus       266 ~p~~~~---~~~-~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~  333 (887)
                      .-....   ++. ........    ..+...+...+.++..  ..+..+...++++|..-    .+++.|...|.++...
T Consensus       427 g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~  504 (552)
T KOG1550|consen  427 GYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQ  504 (552)
T ss_pred             hhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHh
Confidence            111100   000 00000000    1244556666666543  45677788888887754    4588999999998887


Q ss_pred             cCCCchhHhhHHHHHHHc---CCHHHHHHHHHHHHhcCCC
Q 002729          334 TTGLSAPFNNLAVIYKQQ---GNYADAISCYNEVLRIDPL  370 (887)
Q Consensus       334 ~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~  370 (887)
                      .   .....++|.++..-   .....|..++.++.+.+..
T Consensus       505 ~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~~  541 (552)
T KOG1550|consen  505 G---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDSR  541 (552)
T ss_pred             h---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCch
Confidence            7   78888899888642   1278999999998876644

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=97.20  E-value=0.32  Score=50.37  Aligned_cols=123  Identities=11%  Similarity=0.030  Sum_probs=78.8

Q ss_pred             HHhcCCHHHHHHHHHHHHhhC----CCc----hhHHHHHHHHHHhcC-CHHHHHHHHHHHHhc----CCC----------
Q 002729            9 MYKSGSYKQALEHSNSVYERN----PLR----TDNLLLLGAIYYQLH-DYDMCIARNEEALRL----EPR----------   65 (887)
Q Consensus         9 ~~~~g~~~~A~~~~~~~l~~~----p~~----~~~~~~la~~~~~~g-~~~~A~~~~~~al~~----~p~----------   65 (887)
                      ..++|+++.|..++.++-...    |+.    ...++..|......+ ++++|...++++.+.    .+.          
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            467889999999998876543    222    345677777777788 888888888888765    111          


Q ss_pred             cHHHHHHHHHHHHHcCCHH---HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 002729           66 FAECYGNMANAWKEKGDID---LAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALN  131 (887)
Q Consensus        66 ~~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~  131 (887)
                      ...++..++.+|...+.++   +|....+.+-+..|+.+..+.....+..+.++.+++.+.+.+++..-
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~  151 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV  151 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence            1245566666776666544   34444455555556666666555555555667777777777776543

It is also involved in sporulation [].

>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1

Probab=97.18  E-value=0.0053  Score=65.46  Aligned_cols=107  Identities=19%  Similarity=0.211  Sum_probs=76.1

Q ss_pred             CCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCC
Q 002729          711 EDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLA  790 (887)
Q Consensus       711 ~~~~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~  790 (887)
                      +...++++++....-     +++ ++++..|+..+.++|.+.. ..           ..++|.+.+.. ..++.+.+..|
T Consensus       191 ~~~~iLv~~gg~~~~-----~~~-~~l~~~~~~~~~v~g~~~~-~~-----------~~~ni~~~~~~-~~~~~~~m~~a  251 (318)
T PF13528_consen  191 DEPKILVYFGGGGPG-----DLI-EALKALPDYQFIVFGPNAA-DP-----------RPGNIHVRPFS-TPDFAELMAAA  251 (318)
T ss_pred             CCCEEEEEeCCCcHH-----HHH-HHHHhCCCCeEEEEcCCcc-cc-----------cCCCEEEeecC-hHHHHHHHHhC
Confidence            345677777766433     443 5677788877777765421 10           15778888754 25667778899


Q ss_pred             cEEecCCCCCCchhHHHHHHhCCceeeecccc-hhhhhHHHHHHhcCCCC
Q 002729          791 DLFLDTPLCNAHTTGTDILWAGLPMITLPLEK-MATRVAGSLCLATGLGE  839 (887)
Q Consensus       791 d~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~-~~~r~~~~~l~~~g~~~  839 (887)
                      |+++-   -+|.+|++||+++|+|+|.++-+. ...+.-+..|..+|+..
T Consensus       252 d~vIs---~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~  298 (318)
T PF13528_consen  252 DLVIS---KGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGI  298 (318)
T ss_pred             CEEEE---CCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeE
Confidence            99983   466777999999999999998764 45566688899999977

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.18  E-value=0.00093  Score=43.61  Aligned_cols=33  Identities=39%  Similarity=0.516  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 002729          407 EAHANLASAYKDSGHVEAAIKSYKQALLLRPDF  439 (887)
Q Consensus       407 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  439 (887)
                      ++++.+|.++..+|++++|++.|+++++++|++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            456666666666666666666666666666653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.17  E-value=0.011  Score=59.33  Aligned_cols=101  Identities=23%  Similarity=0.312  Sum_probs=87.8

Q ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 002729           32 RTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR----FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNL  107 (887)
Q Consensus        32 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  107 (887)
                      .+..+-.-|+-|++.++|..|...|.+.++..-.    ++..|.+.+.+....|+|..|+....+++..+|.+..+++.-
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~  159 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG  159 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence            4666777899999999999999999999987543    467888999999999999999999999999999999999999


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhCC
Q 002729          108 ASAYMRKGRLNEAAQCCRQALALNP  132 (887)
Q Consensus       108 a~~~~~~g~~~~A~~~~~~~l~~~p  132 (887)
                      +.+++.+.++.+|...++..+..+.
T Consensus       160 Akc~~eLe~~~~a~nw~ee~~~~d~  184 (390)
T KOG0551|consen  160 AKCLLELERFAEAVNWCEEGLQIDD  184 (390)
T ss_pred             hHHHHHHHHHHHHHHHHhhhhhhhH
Confidence            9999999999999999988876553

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.17  E-value=0.00072  Score=44.16  Aligned_cols=32  Identities=47%  Similarity=0.635  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 002729          407 EAHANLASAYKDSGHVEAAIKSYKQALLLRPD  438 (887)
Q Consensus       407 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  438 (887)
                      .+|+.+|.+|..+|++++|+..|+++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            35555666666666666666666666666554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length

Probab=97.16  E-value=0.053  Score=56.91  Aligned_cols=278  Identities=15%  Similarity=0.136  Sum_probs=142.7

Q ss_pred             cCCCCCChhHHhhhHHhhcCCCCCcEEEEEecCCCCChHHHHHHHhhcCceEECCC--CC-----------HHHHHHHHH
Q 002729          543 SSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSA--MS-----------SDMIAKLIN  609 (887)
Q Consensus       543 s~d~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----------~~~~~~~i~  609 (887)
                      +-|..+.|..+|+.++++.+...+.||++.+-..   +...+-++..--.+..+..  -+           ..++.+.++
T Consensus         4 wiDi~~p~hvhfFk~~I~eL~~~GheV~it~R~~---~~~~~LL~~yg~~y~~iG~~g~~~~~Kl~~~~~R~~~l~~~~~   80 (335)
T PF04007_consen    4 WIDITHPAHVHFFKNIIRELEKRGHEVLITARDK---DETEELLDLYGIDYIVIGKHGDSLYGKLLESIERQYKLLKLIK   80 (335)
T ss_pred             EEECCCchHHHHHHHHHHHHHhCCCEEEEEEecc---chHHHHHHHcCCCeEEEcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            4466666788999999999999999999876432   2223333322222222211  11           356788888


Q ss_pred             hCCCeEEEecCCcCCCCchhhhhcCCCceEEeccccCCCCCCCcccEEEecCccCCCCcCC----CCcc--ceeecCCcc
Q 002729          610 EDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAH----IYSE--KLVHVPHCY  683 (887)
Q Consensus       610 ~~~~dil~~~~~~~~~~~~~~~~~r~apvq~~~~g~~~t~g~~~~d~~~~d~~~~p~~~~~----~~~e--~~~~lp~~~  683 (887)
                      +.++||+|-  ++. ..-..+....-.|+.+. .-.+.+.-...+-+=++|.++.|.....    .+..  ++.+-|+..
T Consensus        81 ~~~pDv~is--~~s-~~a~~va~~lgiP~I~f-~D~e~a~~~~~Lt~Pla~~i~~P~~~~~~~~~~~G~~~~i~~y~G~~  156 (335)
T PF04007_consen   81 KFKPDVAIS--FGS-PEAARVAFGLGIPSIVF-NDTEHAIAQNRLTLPLADVIITPEAIPKEFLKRFGAKNQIRTYNGYK  156 (335)
T ss_pred             hhCCCEEEe--cCc-HHHHHHHHHhCCCeEEE-ecCchhhccceeehhcCCeeECCcccCHHHHHhcCCcCCEEEECCee
Confidence            899999983  222 11111222223454332 1122222222222225666666755321    1222  465565521


Q ss_pred             -ccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEec---CCCC-CCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHH
Q 002729          684 -FVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACF---NQLY-KMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRL  758 (887)
Q Consensus       684 -~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~---~~~~-k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l  758 (887)
                       +.+-++      ..| .+....++|+.++.+++.=+   +..+ +-+...+.-..+.|....+..+++...... . .+
T Consensus       157 E~ayl~~------F~P-d~~vl~~lg~~~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~~~-~-~~  227 (335)
T PF04007_consen  157 ELAYLHP------FKP-DPEVLKELGLDDEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYEDQ-R-EL  227 (335)
T ss_pred             eEEeecC------CCC-ChhHHHHcCCCCCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCcch-h-hH
Confidence             111111      112 23456778886555554322   2221 223333333334444555554444333222 1 12


Q ss_pred             HHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCCchhHHHHHHhCCceeee-cccchhhhhHHHHHHhcCC
Q 002729          759 RAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITL-PLEKMATRVAGSLCLATGL  837 (887)
Q Consensus       759 ~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~-~g~~~~~r~~~~~l~~~g~  837 (887)
                         ++..+     +.+.+.  .-+.+.++.-||+++    -+|||.+.||-.+|+|+|+. +|..+.  + .-.|...|+
T Consensus       228 ---~~~~~-----~~i~~~--~vd~~~Ll~~a~l~I----g~ggTMa~EAA~LGtPaIs~~~g~~~~--v-d~~L~~~Gl  290 (335)
T PF04007_consen  228 ---FEKYG-----VIIPPE--PVDGLDLLYYADLVI----GGGGTMAREAALLGTPAISCFPGKLLA--V-DKYLIEKGL  290 (335)
T ss_pred             ---HhccC-----ccccCC--CCCHHHHHHhcCEEE----eCCcHHHHHHHHhCCCEEEecCCcchh--H-HHHHHHCCC
Confidence               22222     344332  123345566799998    78899999999999999974 444211  1 134666687


Q ss_pred             CCccccCCHHHHHHHHHH
Q 002729          838 GEEMIVNSMKEYEERAVS  855 (887)
Q Consensus       838 ~~~~~~~~~~~y~~~a~~  855 (887)
                       = +-..|.++-++...+
T Consensus       291 -l-~~~~~~~ei~~~v~~  306 (335)
T PF04007_consen  291 -L-YHSTDPDEIVEYVRK  306 (335)
T ss_pred             -e-EecCCHHHHHHHHHH
Confidence             2 455888887774444

They are found in archaea and some bacteria and have no known function.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=97.15  E-value=0.3  Score=50.50  Aligned_cols=25  Identities=24%  Similarity=0.182  Sum_probs=15.1

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHH
Q 002729          409 HANLASAYKDSGHVEAAIKSYKQAL  433 (887)
Q Consensus       409 ~~~la~~~~~~g~~~~A~~~~~~al  433 (887)
                      ..+.|.-.++.++|++|.++|+-++
T Consensus       249 LW~~~~~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  249 LWNKGKKHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            3444566666666666666666554

It is also involved in sporulation [].

>PRK11619 lytic murein transglycosylase; Provisional

Probab=97.12  E-value=0.87  Score=52.82  Aligned_cols=403  Identities=11%  Similarity=0.013  Sum_probs=221.9

Q ss_pred             hHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCcHHHHHHHHHH---H
Q 002729            3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLH--DYDMCIARNEEALRLEPRFAECYGNMANA---W   77 (887)
Q Consensus         3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~---~   77 (887)
                      |..|...++.|++.++..+..++ ...|-  ..|..........+  .++    .+...++.+|+.+..-......   +
T Consensus        37 f~~A~~a~~~g~~~~~~~~~~~l-~d~pL--~~yl~y~~L~~~l~~~~~~----ev~~Fl~~~~~~P~~~~Lr~~~l~~L  109 (644)
T PRK11619         37 YQQIKQAWDNRQMDVVEQLMPTL-KDYPL--YPYLEYRQLTQDLMNQPAV----QVTNFIRANPTLPPARSLQSRFVNEL  109 (644)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhc-cCCCc--HhHHHHHHHHhccccCCHH----HHHHHHHHCCCCchHHHHHHHHHHHH
Confidence            56677888888888876666654 33443  22222222222222  333    3444455667665444433333   2


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 002729           78 KEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSC  157 (887)
Q Consensus        78 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~  157 (887)
                      .+.+++..-+.++    ...|.+.......+......|+.++|....+++.......+.....+-..+.+.|........
T Consensus       110 a~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d~w  185 (644)
T PRK11619        110 ARREDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPLAYL  185 (644)
T ss_pred             HHccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHHHHH
Confidence            3455666555532    234777777788888888899988888888887766655555555555555555544333221


Q ss_pred             HHHHHhhCCChHHHHHHHHHHH-----------HH-cCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCChHHHHH
Q 002729          158 YLEALRIQPTFAIAWSNLAGLF-----------ME-SGDLNRALQYYKEAVKLKPTF-PDAYLNLGNVYKALGMPQEAIM  224 (887)
Q Consensus       158 ~~~al~~~p~~~~~~~~la~~~-----------~~-~g~~~~A~~~~~~~l~~~~~~-~~~~~~l~~~~~~~g~~~~A~~  224 (887)
                      -+--+....++......+...+           .. ..+...+...+..   ..+.. ......++.......+.+.|..
T Consensus       186 ~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~---~~~~~~~~~~~~~~l~Rlar~d~~~A~~  262 (644)
T PRK11619        186 ERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART---TGPTDFTRQMAAVAFASVARQDAENARL  262 (644)
T ss_pred             HHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc---cCCChhhHHHHHHHHHHHHHhCHHHHHH
Confidence            1111111111111111111111           00 0111111111111   11111 1122223333445567788888


Q ss_pred             HHHHHHhhCC---C--hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002729          225 CYQRAVQTRP---N--AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL  299 (887)
Q Consensus       225 ~~~~~~~~~p---~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  299 (887)
                      .+.+......   .  ...+..++......+...+|...+..+..... +.+............++++.+...+..+-..
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~-~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~  341 (644)
T PRK11619        263 MIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ-STSLLERRVRMALGTGDRRGLNTWLARLPME  341 (644)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC-CcHHHHHHHHHHHHccCHHHHHHHHHhcCHh
Confidence            8887644332   1  33444555444444336677777776653322 2233444444556888998888888776554


Q ss_pred             CCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCH-H--HH-HHHHHHHHhcCCCCHHHH
Q 002729          300 QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNY-A--DA-ISCYNEVLRIDPLAADGL  375 (887)
Q Consensus       300 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~--~A-~~~~~~al~~~p~~~~~~  375 (887)
                      ........+-+|..+...|+.++|...|+++..  +.  ..|-.++.-.  .|.. .  .. ...-...+.     ....
T Consensus       342 ~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~~--~fYG~LAa~~--Lg~~~~~~~~~~~~~~~~~~-----~~~~  410 (644)
T PRK11619        342 AKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--QR--GFYPMVAAQR--LGEEYPLKIDKAPKPDSALT-----QGPE  410 (644)
T ss_pred             hccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--CC--CcHHHHHHHH--cCCCCCCCCCCCCchhhhhc-----cChH
Confidence            455677888999998889999999999999754  21  1222333221  2211 0  00 000000111     1234


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 002729          376 VNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQAL  433 (887)
Q Consensus       376 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  433 (887)
                      ...+..+...|+..+|...+..++..  .+..-...++....+.|.++.++....+..
T Consensus       411 ~~ra~~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~~~ai~~~~~~~  466 (644)
T PRK11619        411 MARVRELMYWNMDNTARSEWANLVAS--RSKTEQAQLARYAFNQQWWDLSVQATIAGK  466 (644)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCHHHHHHHHhhch
Confidence            66788889999999999999988875  235667788888889999999988776554

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.08  E-value=0.012  Score=54.35  Aligned_cols=119  Identities=20%  Similarity=0.176  Sum_probs=77.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHH
Q 002729          345 AVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEA  424 (887)
Q Consensus       345 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  424 (887)
                      +......++.+.++..+++++.+.....-.-...      ..-.......++...      ..+...++..+...|++++
T Consensus        13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~------~~W~~~~r~~l~~~~------~~~~~~l~~~~~~~~~~~~   80 (146)
T PF03704_consen   13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDD------EEWVEPERERLRELY------LDALERLAEALLEAGDYEE   80 (146)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT------STTHHHHHHHHHHHH------HHHHHHHHHHHHHTT-HHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc------cHHHHHHHHHHHHHH------HHHHHHHHHHHHhccCHHH
Confidence            4445567788888888888887642211000000      000111111222211      3566778888889999999


Q ss_pred             HHHHHHHHHHcCCCChHHHHHHHHHhhhcCChhhHhHHHHHHHHHHHHHhc
Q 002729          425 AIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVN  475 (887)
Q Consensus       425 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  475 (887)
                      |+..+++++..+|-+..++..++.++...|+..+|.+.|+++...+.+.++
T Consensus        81 a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg  131 (146)
T PF03704_consen   81 ALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELG  131 (146)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999888876653

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.06  E-value=0.026  Score=52.39  Aligned_cols=117  Identities=20%  Similarity=0.111  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHcCChHHHHHHH
Q 002729           51 MCIARNEEALRLEPRF---AECYGNMANAWKEKGDIDLAIRYYLVAIELRPN---FADAWSNLASAYMRKGRLNEAAQCC  124 (887)
Q Consensus        51 ~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~  124 (887)
                      +.....++....++.+   ..+-..++..+...|++++|+..++.++....+   ...+-..++.+...+|.+++|+..+
T Consensus        70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L  149 (207)
T COG2976          70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL  149 (207)
T ss_pred             hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            4444455555555444   345567788888899999999999888865333   1335667888888999999998887


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh
Q 002729          125 RQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF  168 (887)
Q Consensus       125 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  168 (887)
                      ......+ -........|+++...|+-++|...|+++++..+..
T Consensus       150 ~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         150 DTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASP  192 (207)
T ss_pred             hcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence            7653211 122345678889999999999999999998886443

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.06  E-value=0.0012  Score=43.01  Aligned_cols=32  Identities=31%  Similarity=0.640  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002729          373 DGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT  404 (887)
Q Consensus       373 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  404 (887)
                      .+|+.+|.++..+|++++|+..|+++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            45666666666666666666666666666665

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=97.04  E-value=0.23  Score=52.10  Aligned_cols=79  Identities=20%  Similarity=0.213  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCC----------
Q 002729          355 ADAISCYNEVLRIDPLAADGLVNRGNTYKE----IGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG----------  420 (887)
Q Consensus       355 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----------  420 (887)
                      ..|...|.++....  ++.+...+|.+|..    ..++.+|..+|.++.+...  ..+.+.++ ++...|          
T Consensus       172 ~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~  246 (292)
T COG0790         172 KKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLT  246 (292)
T ss_pred             HhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcc
Confidence            46777777776654  66777777777755    2477888888888887766  67777777 555555          


Q ss_pred             -----CHHHHHHHHHHHHHcCCC
Q 002729          421 -----HVEAAIKSYKQALLLRPD  438 (887)
Q Consensus       421 -----~~~~A~~~~~~al~~~p~  438 (887)
                           +...|..++.++....+.
T Consensus       247 ~~~~~~~~~a~~~~~~~~~~~~~  269 (292)
T COG0790         247 AAKEEDKKQALEWLQKACELGFD  269 (292)
T ss_pred             cccCCCHHHHHHHHHHHHHcCCh
Confidence                 556666666666555443

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=97.02  E-value=0.49  Score=56.55  Aligned_cols=398  Identities=12%  Similarity=0.015  Sum_probs=202.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHc----C---CHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 002729           39 LGAIYYQLHDYDMCIARNEEALRLEPRF---AECYGNMANAWKEK----G---DIDLAIRYYLVAIELRPNFADAWSNLA  108 (887)
Q Consensus        39 la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~la  108 (887)
                      ...++...+.|+.|+..|++.-...|..   .++.+..|.....+    |   .+++|+..|++.-. .|.-+--|...+
T Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  559 (932)
T PRK13184        481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKA  559 (932)
T ss_pred             CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHH
Confidence            3456777888999999999998888864   46667777665532    2   46777777776543 455566788888


Q ss_pred             HHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcC
Q 002729          109 SAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQ-----GLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESG  183 (887)
Q Consensus       109 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  183 (887)
                      .+|.++|++++-++++.-+++..|..+..-...-.+..++     .+-..|....--++..-|.....-           
T Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  628 (932)
T PRK13184        560 LVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSR-----------  628 (932)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccch-----------
Confidence            8999999999999999999998887765433222222211     112233333333344444332211           


Q ss_pred             CHHHHHHHHHHHHh---------hCCCCHHHH---HHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHhhHHHHHHHcCC
Q 002729          184 DLNRALQYYKEAVK---------LKPTFPDAY---LNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQ  251 (887)
Q Consensus       184 ~~~~A~~~~~~~l~---------~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~la~~~~~~g~  251 (887)
                         +-...++....         .++......   +.+-.. .-.|..---.++++++.+..+ ..+..+.-.+....|+
T Consensus       629 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  703 (932)
T PRK13184        629 ---EEEKFLEILYHKQQATLFCQLDKTPLQFRSSKMELFLS-FWSGFTPFLPELFQRAWDLRD-YRALADIFYVACDLGN  703 (932)
T ss_pred             ---HHHHHHHHHHhhccCCceeeccCchhhhhhhhHHHHHH-HHhcCchhhHHHHHHHhhccc-HHHHHHHHHHHHHhcc
Confidence               11111111111         111111111   111111 112333344455555555433 3555555566677788


Q ss_pred             hHHHHHHHHHHHhc-----CCCcH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH-HHHhHHHHHHHc
Q 002729          252 ADMAILYYKQAIGC-----DPRFL--------EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQ-ALTNLGNIYMEW  317 (887)
Q Consensus       252 ~~~A~~~~~~~l~~-----~p~~~--------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~  317 (887)
                      ++-+.+......+.     .|.+.        ..+..-..++.....++++.+.+.+   ..|.... +....+.-....
T Consensus       704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  780 (932)
T PRK13184        704 WEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDN---TDPTLILYAFDLFAIQALLD  780 (932)
T ss_pred             HHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhh---CCHHHHHHHHHHHHHHHHHh
Confidence            77666555444311     11111        1122223333444455555543322   2222111 111111111122


Q ss_pred             CChhHHHHHHHHHHhc---cCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002729          318 NMLPAAASYYKATLAV---TTGLSAPFNNLAVIYKQQGNYADAISCYNEVLR--IDPLAADGLVNRGNTYKEIGRVTDAI  392 (887)
Q Consensus       318 g~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~  392 (887)
                      ++.+.-....+.....   .............+|....++++|-+++...-.  ...+...++...|.-+.-.++-+-|.
T Consensus       781 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  860 (932)
T PRK13184        781 EEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDREAAK  860 (932)
T ss_pred             ccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHHHHhcCchhHHH
Confidence            2222222222222221   112233344556777788888888888744311  22355667788888888888888888


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHhhhcCChhhHhHHHHHHHH
Q 002729          393 QDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEG  468 (887)
Q Consensus       393 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  468 (887)
                      ..|..+.+-.+- +.  ...+..+.-.|...+...++++-        .....+...+.|.|+-++. ..++.+-.
T Consensus       861 ~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~-~~~~~~~~  924 (932)
T PRK13184        861 AHFSGCREDALF-PR--SLDGDIFDYLGKISDNLSWWEKK--------QLLRQKFLYFHCLGDSEER-DKYRQAYL  924 (932)
T ss_pred             HHHhhccccccC-cc--hhhccccchhccccccccHHHHH--------HHHHHHHHHHHHhCChhHh-HHHHHHHH
Confidence            888777632211 11  22344455556666665555542        2233445556677776655 44444433

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.02  E-value=0.0007  Score=67.87  Aligned_cols=92  Identities=25%  Similarity=0.237  Sum_probs=60.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHH
Q 002729           40 GAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNE  119 (887)
Q Consensus        40 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  119 (887)
                      +.-.+..|++++|++.|..++.++|.....+...+.++.++++...|+..+..+++++|+...-|...+.....+|++++
T Consensus       121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~  200 (377)
T KOG1308|consen  121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEE  200 (377)
T ss_pred             HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHH
Confidence            33445566666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHhC
Q 002729          120 AAQCCRQALALN  131 (887)
Q Consensus       120 A~~~~~~~l~~~  131 (887)
                      |...+..+.+++
T Consensus       201 aa~dl~~a~kld  212 (377)
T KOG1308|consen  201 AAHDLALACKLD  212 (377)
T ss_pred             HHHHHHHHHhcc
Confidence            666666666654

>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins

Probab=96.98  E-value=0.017  Score=60.09  Aligned_cols=211  Identities=12%  Similarity=0.099  Sum_probs=118.3

Q ss_pred             HHhCCCeEEEecCCcCCCCchhhhhcCCCceEEeccccCCCCCCCcccEEEecCccCCCCcCCC-CccceeecCCccccC
Q 002729          608 INEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHI-YSEKLVHVPHCYFVN  686 (887)
Q Consensus       608 i~~~~~dil~~~~~~~~~~~~~~~~~r~apvq~~~~g~~~t~g~~~~d~~~~d~~~~p~~~~~~-~~e~~~~lp~~~~~~  686 (887)
                      +....+|++|-..+.|...-+-+-.....++.+..++.|..- ...+|++|+-..      +.. -..+++..++.--..
T Consensus        53 ~~~~~pdLiIsaGr~t~~~~~~l~r~~gg~~~~V~i~~P~~~-~~~FDlvi~p~H------D~~~~~~Nvl~t~ga~~~i  125 (311)
T PF06258_consen   53 LEPPWPDLIISAGRRTAPAALALRRASGGRTKTVQIMDPRLP-PRPFDLVIVPEH------DRLPRGPNVLPTLGAPNRI  125 (311)
T ss_pred             ccCCCCcEEEECCCchHHHHHHHHHHcCCCceEEEEcCCCCC-ccccCEEEECcc------cCcCCCCceEecccCCCcC
Confidence            444679999866666644333333334566788888999755 788999887222      221 234455554321111


Q ss_pred             CCccccccCCCCCCCCCCCCC-CCCC--CcEEEEecCCCCCCCHH----HHHHHHHHHhhcCCceEEEecC---ChhhHH
Q 002729          687 DYKQKNMDVLDPNCQPKRSDY-GLPE--DKFIFACFNQLYKMDPE----IFNTWCNILRRVPNSALWLLRF---PAAGEM  756 (887)
Q Consensus       687 ~~~~~~~~~~~~~~~~~r~~~-~l~~--~~~~~~~~~~~~k~~~~----~~~~~~~il~~~p~~~l~~~~~---~~~~~~  756 (887)
                      ++.....     .......++ .+|.  -.+++|.-++.++++++    +++...++.+..+ ..++|...   ++....
T Consensus       126 ~~~~l~~-----a~~~~~~~~~~l~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~vttSRRTp~~~~~  199 (311)
T PF06258_consen  126 TPERLAE-----AAAAWAPRLAALPRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYG-GSLLVTTSRRTPPEAEA  199 (311)
T ss_pred             CHHHHHH-----HHHhhhhhhccCCCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCC-CeEEEEcCCCCcHHHHH
Confidence            1110000     000000001 1233  34678888889999998    3444445555666 55666543   233334


Q ss_pred             HHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCC-chh-HHHHHHhCCceeeecccchhhhhHH--HHH
Q 002729          757 RLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTT-GTDILWAGLPMITLPLEKMATRVAG--SLC  832 (887)
Q Consensus       757 ~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t-~~eal~~gvPvvt~~g~~~~~r~~~--~~l  832 (887)
                      .|++.+.    +...+.+....+..-|.+++..||.++    .++ +.+ +.||++.|.||.+++-+.-.+|+.-  ..|
T Consensus       200 ~L~~~~~----~~~~~~~~~~~~~nPy~~~La~ad~i~----VT~DSvSMvsEA~~tG~pV~v~~l~~~~~r~~r~~~~L  271 (311)
T PF06258_consen  200 ALRELLK----DNPGVYIWDGTGENPYLGFLAAADAIV----VTEDSVSMVSEAAATGKPVYVLPLPGRSGRFRRFHQSL  271 (311)
T ss_pred             HHHHhhc----CCCceEEecCCCCCcHHHHHHhCCEEE----EcCccHHHHHHHHHcCCCEEEecCCCcchHHHHHHHHH
Confidence            4444443    345663334444445888889999998    555 444 4699999999998877764455543  334


Q ss_pred             HhcCCCC
Q 002729          833 LATGLGE  839 (887)
Q Consensus       833 ~~~g~~~  839 (887)
                      ...|.--
T Consensus       272 ~~~g~~r  278 (311)
T PF06258_consen  272 EERGAVR  278 (311)
T ss_pred             HHCCCEE
Confidence            4445543

The function of this family is unknown.

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.97  E-value=0.027  Score=56.48  Aligned_cols=101  Identities=23%  Similarity=0.216  Sum_probs=90.2

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 002729           66 FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPN----FADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNL  141 (887)
Q Consensus        66 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l  141 (887)
                      .+..+..-|+-|++.++|..|+..|.+.++..-.    +...|.+.+.+....|+|..|+.-..+++..+|.+..+++.-
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~  159 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG  159 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence            3566777899999999999999999999987433    566899999999999999999999999999999999999999


Q ss_pred             HHHHHHcCChHHHHHHHHHHHhhCC
Q 002729          142 GNLMKAQGLVQEAYSCYLEALRIQP  166 (887)
Q Consensus       142 a~~~~~~g~~~~A~~~~~~al~~~p  166 (887)
                      +.++..+.++.+|..+.+..+..+.
T Consensus       160 Akc~~eLe~~~~a~nw~ee~~~~d~  184 (390)
T KOG0551|consen  160 AKCLLELERFAEAVNWCEEGLQIDD  184 (390)
T ss_pred             hHHHHHHHHHHHHHHHHhhhhhhhH
Confidence            9999999999999999988876543

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.95  E-value=0.002  Score=42.04  Aligned_cols=32  Identities=22%  Similarity=0.526  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002729          373 DGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT  404 (887)
Q Consensus       373 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  404 (887)
                      .+++.+|.++...|++++|++.|+++++++|+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            45566666666666666666666666666665

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=96.94  E-value=0.059  Score=56.97  Aligned_cols=165  Identities=11%  Similarity=0.077  Sum_probs=97.4

Q ss_pred             HHHHHHHhhCCCchhHHHHHHHHHHhcCC------------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 002729           20 EHSNSVYERNPLRTDNLLLLGAIYYQLHD------------YDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAI   87 (887)
Q Consensus        20 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~   87 (887)
                      ..|++.++.+|.+.++|..+....-..-.            .+.-+.++++|++.+|++...+..+.....+..+-++..
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~   85 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA   85 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            45778888999999999888765544322            345666777777777777777777777777777777777


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHH---cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002729           88 RYYLVAIELRPNFADAWSNLASAYMR---KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI  164 (887)
Q Consensus        88 ~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  164 (887)
                      +.+++++..+|++...|..+......   .-.+++....|.++++.-.....          ............+     
T Consensus        86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~----------~~~~~~~~~~~~e-----  150 (321)
T PF08424_consen   86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRS----------GRMTSHPDLPELE-----  150 (321)
T ss_pred             HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhc----------cccccccchhhHH-----
Confidence            77777777777777766665554433   22455666666665543110000          0000000000000     


Q ss_pred             CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002729          165 QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKP  200 (887)
Q Consensus       165 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~  200 (887)
                       .....++..+.....+.|..+.|+..++..++.+-
T Consensus       151 -~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~  185 (321)
T PF08424_consen  151 -EFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF  185 (321)
T ss_pred             -HHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence             00123445566666777777777777777777653

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.93  E-value=0.018  Score=53.19  Aligned_cols=113  Identities=19%  Similarity=0.118  Sum_probs=78.4

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 002729          310 LGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVT  389 (887)
Q Consensus       310 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~  389 (887)
                      .+......++.+.+...+++++.+.....-.-...      ..-.......+++.      ...+...++..+...|+++
T Consensus        12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~------~~W~~~~r~~l~~~------~~~~~~~l~~~~~~~~~~~   79 (146)
T PF03704_consen   12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLDD------EEWVEPERERLREL------YLDALERLAEALLEAGDYE   79 (146)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT------STTHHHHHHHHHHH------HHHHHHHHHHHHHHTT-HH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc------cHHHHHHHHHHHHH------HHHHHHHHHHHHHhccCHH
Confidence            35556678899999999999998864432111000      01112222233332      2346677888899999999


Q ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 002729          390 DAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALL  434 (887)
Q Consensus       390 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  434 (887)
                      +|+..+++++..+|.+..++..+..+|...|+..+|++.|+++..
T Consensus        80 ~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   80 EALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.86  E-value=0.0099  Score=59.78  Aligned_cols=125  Identities=15%  Similarity=0.167  Sum_probs=99.5

Q ss_pred             hcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEE-cCCCCcHHHHHhccCCcEE--ecCCCCCC--chhHHHHHHhCC
Q 002729          739 RVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIF-TDVAMKQEHIRRSSLADLF--LDTPLCNA--HTTGTDILWAGL  813 (887)
Q Consensus       739 ~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~-~~~~~~~~~~~~~~~~d~~--ld~~~~~g--~~t~~eal~~gv  813 (887)
                      ..|+...+|-|.||. .+...+...+...  .+|.| +++..-++|...++.||+-  |.|+..+=  .+-++|-.-||+
T Consensus       290 ~lP~llciITGKGPl-kE~Y~~~I~~~~~--~~v~~~tpWL~aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcgl  366 (444)
T KOG2941|consen  290 NLPSLLCIITGKGPL-KEKYSQEIHEKNL--QHVQVCTPWLEAEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGL  366 (444)
T ss_pred             CCCcEEEEEcCCCch-hHHHHHHHHHhcc--cceeeeecccccccchhHhhccccceEeeecCcccCcchhHHHhhcCCC
Confidence            367656666678887 6777777888876  66666 5788889999999999964  55544333  445799999999


Q ss_pred             ceeeecccchhhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhc----CHHHHHHHHHHHHhh
Q 002729          814 PMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLAL----DRQKLQALTNKLKSV  873 (887)
Q Consensus       814 Pvvt~~g~~~~~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l~~----d~~~~~~~~~~~~~~  873 (887)
                      ||+++.=.+..+=|-.      |.++ ++..|.++..+...-|.+    +...+.+++.++++.
T Consensus       367 PvcA~~fkcl~ELVkh------~eNG-lvF~Ds~eLa~ql~~lf~~fp~~a~~l~~lkkn~~e~  423 (444)
T KOG2941|consen  367 PVCAVNFKCLDELVKH------GENG-LVFEDSEELAEQLQMLFKNFPDNADELNQLKKNLREE  423 (444)
T ss_pred             ceeeecchhHHHHHhc------CCCc-eEeccHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHH
Confidence            9999988888774443      9999 999999999998888888    899999999999886

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=96.85  E-value=0.52  Score=49.38  Aligned_cols=181  Identities=23%  Similarity=0.199  Sum_probs=85.5

Q ss_pred             hcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCC
Q 002729           45 QLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEK----GDIDLAIRYYLVAIELRPNFADAWSNLASAYMR----KGR  116 (887)
Q Consensus        45 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~  116 (887)
                      ..+++..|...+.++-..  .+......++.+|...    .+..+|...|..+.  ...++.+.+.+|..|..    ..+
T Consensus        53 ~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d  128 (292)
T COG0790          53 YPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLD  128 (292)
T ss_pred             ccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccC
Confidence            444555555555544431  1123444444444332    23445555555332  22334455555555544    235


Q ss_pred             hHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcC-------ChHHHHHHHHHHHhhCCChHHHHHHHHHHHHH----cCC
Q 002729          117 LNEAAQCCRQALALNPLL-VDAHSNLGNLMKAQG-------LVQEAYSCYLEALRIQPTFAIAWSNLAGLFME----SGD  184 (887)
Q Consensus       117 ~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~  184 (887)
                      ..+|..+|+++.+.+... ..+...++..+..-.       +...|...|.++-...  +..+...++.+|..    ..+
T Consensus       129 ~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d  206 (292)
T COG0790         129 LVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRD  206 (292)
T ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcC
Confidence            555555555555443222 122444444444321       1224555555554433  44455555555433    235


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---------------ChHHHHHHHHHHHhhCC
Q 002729          185 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG---------------MPQEAIMCYQRAVQTRP  234 (887)
Q Consensus       185 ~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~~p  234 (887)
                      +.+|..+|.++.+...  ....+.++ ++...|               +...|...+.......+
T Consensus       207 ~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  268 (292)
T COG0790         207 LKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF  268 (292)
T ss_pred             HHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence            5666666666655544  44555555 444333               55666666666655443

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.79  E-value=0.0015  Score=65.60  Aligned_cols=88  Identities=23%  Similarity=0.257  Sum_probs=58.8

Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHH
Q 002729          350 QQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSY  429 (887)
Q Consensus       350 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  429 (887)
                      ..|.+++|++.|..+++++|.....+...+.++.++++...|+..+..+++++|+...-|-..+.+...+|++++|...+
T Consensus       126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl  205 (377)
T KOG1308|consen  126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL  205 (377)
T ss_pred             cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence            44566666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHcCC
Q 002729          430 KQALLLRP  437 (887)
Q Consensus       430 ~~al~~~p  437 (887)
                      +.+.+++-
T Consensus       206 ~~a~kld~  213 (377)
T KOG1308|consen  206 ALACKLDY  213 (377)
T ss_pred             HHHHhccc
Confidence            66666643

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=96.78  E-value=1.6  Score=50.45  Aligned_cols=231  Identities=16%  Similarity=0.030  Sum_probs=126.3

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-
Q 002729          134 LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT---------FAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFP-  203 (887)
Q Consensus       134 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~-  203 (887)
                      ++......+.......++.+|..+..++...-+.         ........+.+....|+.++|.+..+.++..-|.+. 
T Consensus       414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~  493 (894)
T COG2909         414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY  493 (894)
T ss_pred             CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence            4455566667777778888888877776654322         123333456666777888888888888877665543 


Q ss_pred             ----HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-------hhHHhhHHHHHHHcCChH--HHHHHHHHHH----hcC
Q 002729          204 ----DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-------AIAFGNLASTYYERGQAD--MAILYYKQAI----GCD  266 (887)
Q Consensus       204 ----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-------~~~~~~la~~~~~~g~~~--~A~~~~~~~l----~~~  266 (887)
                          ..+..++.+..-.|++++|..+..++.+....       ..+....+.++..+|+..  +....+...-    ...
T Consensus       494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~  573 (894)
T COG2909         494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQK  573 (894)
T ss_pred             hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc
Confidence                35667777777888888888877777665222       223344466666777322  2222222221    222


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCChH---HHHhHHHHHHHcCChhHHHHHHHHHHhccCCC--
Q 002729          267 PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL----QPSHPQ---ALTNLGNIYMEWNMLPAAASYYKATLAVTTGL--  337 (887)
Q Consensus       267 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--  337 (887)
                      |-........+.++..--+++.+..-..+.++.    .|....   .+..++.++...|++++|...+..+.....+.  
T Consensus       574 ~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~  653 (894)
T COG2909         574 PRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQY  653 (894)
T ss_pred             ccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCC
Confidence            332212222222222222245554444444443    222211   22467777788888888887777766553322  


Q ss_pred             chhHh-----hHHHHHHHcCCHHHHHHHHHHH
Q 002729          338 SAPFN-----NLAVIYKQQGNYADAISCYNEV  364 (887)
Q Consensus       338 ~~~~~-----~la~~~~~~g~~~~A~~~~~~a  364 (887)
                      ...|.     ........+|+.++|.....+.
T Consensus       654 ~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s  685 (894)
T COG2909         654 HVDYLAAAYKVKLILWLAQGDKELAAEWLLKS  685 (894)
T ss_pred             CchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence            11111     1122233567777777766663

>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=96.73  E-value=0.0017  Score=66.38  Aligned_cols=210  Identities=16%  Similarity=0.099  Sum_probs=95.4

Q ss_pred             HHHHHHHhCCCeEEEecCCcCCCCchhhhhc-CCCceEEeccccCCCCCCCcccEEEecCccCCCCcCCCCccceeecCC
Q 002729          603 MIAKLINEDKIQILINLNGYTKGARNEIFAM-QPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPH  681 (887)
Q Consensus       603 ~~~~~i~~~~~dil~~~~~~~~~~~~~~~~~-r~apvq~~~~g~~~t~g~~~~d~~~~d~~~~p~~~~~~~~e~~~~lp~  681 (887)
                      .+.+.||..+.|++||+.+...   ..++++ -.||.-+.+-+... .+....+..+..    +.  ..+-.++...+-.
T Consensus         3 ~l~~~Lr~~~yD~vid~~~~~~---s~~l~~~~~a~~riG~~~~~~-~~~~~~~~~~~~----~~--~~~~v~~~~~ll~   72 (247)
T PF01075_consen    3 ALIKKLRKEKYDLVIDLQGSFR---SALLARLSGAKIRIGFGKDDR-GRSLFYNRKVDR----PP--NKHMVDRYLSLLS   72 (247)
T ss_dssp             HHHHHHCTSB-SEEEE-S-SHH---HHHHTCCCSBSEEEEE-TTTS-GGGGGESEEE-T----TS--SSSHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCEEEECCCCcc---HHHHHHHHhhccccccCccch-hhhhcccccccc----cc--cchHHHHHHHHHH
Confidence            5789999999999999977543   333333 45787766654443 111111111211    11  1222222111111


Q ss_pred             ccccCCCccccccCCCC--CCCCCCCCCC-CCCCcEEEEecCC-CCCC-CHHHHHHHHHHHhhcCCceEEEecCChhhHH
Q 002729          682 CYFVNDYKQKNMDVLDP--NCQPKRSDYG-LPEDKFIFACFNQ-LYKM-DPEIFNTWCNILRRVPNSALWLLRFPAAGEM  756 (887)
Q Consensus       682 ~~~~~~~~~~~~~~~~~--~~~~~r~~~~-l~~~~~~~~~~~~-~~k~-~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~  756 (887)
                      ...........+....+  .....+...+ .....+++....+ ..|. ..+.+..+.+-+.+.. ..+++.|.+.....
T Consensus        73 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~-~~vvl~g~~~~~~~  151 (247)
T PF01075_consen   73 ELLGIPYPSTKPELPLSEEEEAAARELLKSKDKPYIGINPGASWPSKRWPAEKWAELIERLKERG-YRVVLLGGPEEQEK  151 (247)
T ss_dssp             HHHTS-SSSSSS----THHHHTTHHTTTT-TTSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT--EEEE--SSHHHHH
T ss_pred             HhcCCCCCCCCcCCcCCHHHHHHHHHhhhhccCCeEEEeecCCCccccCCHHHHHHHHHHHHhhC-ceEEEEccchHHHH
Confidence            00100000000000000  0011222222 3334455443333 3344 4444444444444444 45666666554222


Q ss_pred             HHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCCchhHHHHHHhCCceeeecccchhhhhH
Q 002729          757 RLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVA  828 (887)
Q Consensus       757 ~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~~~r~~  828 (887)
                      ...+.+ ..+.....+.+.|..+-.+..+++..+|+++    -+-+-.+==|-++|+|+|++-|++-..|.+
T Consensus       152 ~~~~~~-~~~~~~~~~~~~~~~~l~e~~ali~~a~~~I----~~Dtg~~HlA~a~~~p~v~lfg~t~~~~~~  218 (247)
T PF01075_consen  152 EIADQI-AAGLQNPVINLAGKTSLRELAALISRADLVI----GNDTGPMHLAAALGTPTVALFGPTNPERWG  218 (247)
T ss_dssp             HHHHHH-HTTHTTTTEEETTTS-HHHHHHHHHTSSEEE----EESSHHHHHHHHTT--EEEEESSS-HHHHS
T ss_pred             HHHHHH-HHhcccceEeecCCCCHHHHHHHHhcCCEEE----ecCChHHHHHHHHhCCEEEEecCCCHHHhC
Confidence            222222 2333223688899999999999999999998    222223334677999999999999888766

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.71  E-value=0.096  Score=48.80  Aligned_cols=94  Identities=19%  Similarity=0.109  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhhCCC----hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002729          206 YLNLGNVYKALGMPQEAIMCYQRAVQTRPN----AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALK  281 (887)
Q Consensus       206 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~  281 (887)
                      ...++..+...+++++|+..++..+....+    ..+-..++.+..+.|++++|+..+....+..- ....-...|.++.
T Consensus        92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill  170 (207)
T COG2976          92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILL  170 (207)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHH
Confidence            345566666666667776666666654333    34445566666666666666666554332110 1112334566666


Q ss_pred             HcCCHHHHHHHHHHHHhcC
Q 002729          282 DVGRVDEAIQCYNQCLSLQ  300 (887)
Q Consensus       282 ~~g~~~~A~~~~~~al~~~  300 (887)
                      ..|+-++|+..|+++++..
T Consensus       171 ~kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         171 AKGDKQEARAAYEKALESD  189 (207)
T ss_pred             HcCchHHHHHHHHHHHHcc
Confidence            6666666666666666654

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=96.69  E-value=0.11  Score=54.77  Aligned_cols=164  Identities=13%  Similarity=0.066  Sum_probs=99.7

Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHH
Q 002729           54 ARNEEALRLEPRFAECYGNMANAWKEKGD------------IDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA  121 (887)
Q Consensus        54 ~~~~~al~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  121 (887)
                      .-|++.++.+|.+..+|..++...-..-.            .+.-+.+|++|++.+|++...+..+.....+..+.++..
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~   85 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA   85 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            45677888899999999888876554432            345566677777777777777776666666666666667


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHH---cCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002729          122 QCCRQALALNPLLVDAHSNLGNLMKA---QGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL  198 (887)
Q Consensus       122 ~~~~~~l~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (887)
                      +.+++++..+|++...|..+......   .-.+++....|.++++.-...          .............++     
T Consensus        86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~----------~~~~~~~~~~~~~~e-----  150 (321)
T PF08424_consen   86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRR----------RSGRMTSHPDLPELE-----  150 (321)
T ss_pred             HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHh----------hccccccccchhhHH-----
Confidence            77777777777766666554444333   223555555555554321100          000000000000000     


Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 002729          199 KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR  233 (887)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  233 (887)
                       .....++..+.......|..+.|+..++..++.+
T Consensus       151 -~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n  184 (321)
T PF08424_consen  151 -EFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN  184 (321)
T ss_pred             -HHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence             0113467778888999999999999999999874

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.68  E-value=0.76  Score=49.89  Aligned_cols=307  Identities=13%  Similarity=0.057  Sum_probs=164.5

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHH-------HHHHHHHHHHcCC--HHHHHHH
Q 002729          121 AQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA-------WSNLAGLFMESGD--LNRALQY  191 (887)
Q Consensus       121 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-------~~~la~~~~~~g~--~~~A~~~  191 (887)
                      .-++.-++...|.   ....+-.+....|.-+++...+-++-...+.....       ++.....+...++  .+...+.
T Consensus       179 ~G~~~~~~Sllpp---~i~~~l~vvgf~g~r~egl~~Lw~~a~~~s~~~~i~~l~L~~y~~~~~~~~~~p~~d~~~~~~~  255 (546)
T KOG3783|consen  179 YGAFTLLLSMLPP---KILRLLSVVGFSGDRDEGLRLLWEAAKQRNFRGAIALLALLCYYQFISFVLGTPNPDGEECEKA  255 (546)
T ss_pred             hHHHHHHHHcCcH---HHHHHHHHHhhcccHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHH
Confidence            3344444444442   22333344445555556555555444333222111       1122222222332  2445555


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 002729          192 YKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN---AIAFGNLASTYYERGQADMAILYYKQAIGCDPR  268 (887)
Q Consensus       192 ~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~  268 (887)
                      +....+..|+++......+..+...|+.+.|+..++..++..-.   ...++.++.++.-..+|..|...+....+...-
T Consensus       256 Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdW  335 (546)
T KOG3783|consen  256 LKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDW  335 (546)
T ss_pred             hHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhh
Confidence            66666678888888888888888888877888888877761111   445667788888888888888888887765554


Q ss_pred             cHHHHHHHH-HHHHH--------cCCHHHHHHHHHHHHh---cCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCC
Q 002729          269 FLEAYNNLG-NALKD--------VGRVDEAIQCYNQCLS---LQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTG  336 (887)
Q Consensus       269 ~~~~~~~la-~~~~~--------~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  336 (887)
                      ..-.|..++ .++..        .|+.++|..+++...+   ..|.+..+-..         -..++.++-.+.- .++.
T Consensus       336 S~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f---------~~RKverf~~~~~-~~~~  405 (546)
T KOG3783|consen  336 SHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKF---------IVRKVERFVKRGP-LNAS  405 (546)
T ss_pred             hHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHH---------HHHHHHHHhcccc-cccc
Confidence            443444444 22211        2344444444443322   22221111000         0011111111110 1111


Q ss_pred             Cch--hHhhHHHHHHHc--CCHHHHHHHHHH--HHhcCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CC-
Q 002729          337 LSA--PFNNLAVIYKQQ--GNYADAISCYNE--VLRIDPLAAD--GLVNRGNTYKEIGRVTDAIQDYIRAITIR---PT-  404 (887)
Q Consensus       337 ~~~--~~~~la~~~~~~--g~~~~A~~~~~~--al~~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~-  404 (887)
                      ...  .+..++..+..-  ...++..+.-..  .-+.+..+.+  -+..+|.++..+|+-..|..+|...++..   .. 
T Consensus       406 ~~la~P~~El~Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d  485 (546)
T KOG3783|consen  406 ILLASPYYELAYFWNGFSRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTED  485 (546)
T ss_pred             ccccchHHHHHHHHhhcccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccc
Confidence            111  233344333321  122222211111  1112211222  45667999999999999999999888431   11 


Q ss_pred             ---cHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCCh
Q 002729          405 ---MAEAHANLASAYKDSGH-VEAAIKSYKQALLLRPDFP  440 (887)
Q Consensus       405 ---~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~  440 (887)
                         .|.+++.+|..|.++|. ..++..++.+|.+...++.
T Consensus       486 ~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~  525 (546)
T KOG3783|consen  486 LWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYE  525 (546)
T ss_pred             cccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccc
Confidence               26799999999999998 9999999999998876654

>TIGR00661 MJ1255 conserved hypothetical protein

Probab=96.65  E-value=0.046  Score=58.17  Aligned_cols=67  Identities=13%  Similarity=0.137  Sum_probs=52.6

Q ss_pred             CCcEEEcCCCCcHHHHHhccCCcEEecCCCCCCchhHHHHHHhCCceeeecccch-hhhhHHHHHHhcCCCC
Q 002729          769 PDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKM-ATRVAGSLCLATGLGE  839 (887)
Q Consensus       769 ~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~-~~r~~~~~l~~~g~~~  839 (887)
                      ++++.+.+..+ +++...+..||+++-   -+|.+|+.||+++|+|+|..+-... ....-+..+...|+..
T Consensus       228 ~~~v~~~~~~~-~~~~~~l~~ad~vI~---~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~  295 (321)
T TIGR00661       228 NENVEIRRITT-DNFKELIKNAELVIT---HGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGI  295 (321)
T ss_pred             CCCEEEEECCh-HHHHHHHHhCCEEEE---CCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEE
Confidence            47888888766 678888899999983   3456788999999999999987532 4456667788889865

This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.

>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]

Probab=96.61  E-value=0.012  Score=64.74  Aligned_cols=113  Identities=18%  Similarity=0.027  Sum_probs=84.7

Q ss_pred             CCCCCCCC--CCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEecCC-hhhHHHHHHHHHHcCCCCCcEEEcCC
Q 002729          703 KRSDYGLP--EDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFP-AAGEMRLRAYAVAQGVQPDQIIFTDV  777 (887)
Q Consensus       703 ~r~~~~l~--~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~~-~~~~~~l~~~~~~~g~~~~r~~~~~~  777 (887)
                      .+..+||+  .+.++|+..+|+  .|-.+-++++--.+++..  .+++++|.+ +..+..+...+..+.   +++.+.-.
T Consensus       282 L~~~~gL~~~~~~pl~~~vsRl~~QKG~dl~~~~i~~~l~~~--~~~vilG~gd~~le~~~~~la~~~~---~~~~~~i~  356 (487)
T COG0297         282 LQERLGLDVDLPGPLFGFVSRLTAQKGLDLLLEAIDELLEQG--WQLVLLGTGDPELEEALRALASRHP---GRVLVVIG  356 (487)
T ss_pred             HHHHhCCCCCCCCcEEEEeeccccccchhHHHHHHHHHHHhC--ceEEEEecCcHHHHHHHHHHHHhcC---ceEEEEee
Confidence            56678888  367899999998  488888888888888776  889888866 233456666666553   35555444


Q ss_pred             CCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecc
Q 002729          778 AMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPL  820 (887)
Q Consensus       778 ~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g  820 (887)
                      .+..-....|..+|++|=|+-|.+ |.|-++||..|.+.|.++-
T Consensus       357 ~~~~la~~i~agaD~~lmPSrfEPcGL~ql~amryGtvpIv~~t  400 (487)
T COG0297         357 YDEPLAHLIYAGADVILMPSRFEPCGLTQLYAMRYGTLPIVRET  400 (487)
T ss_pred             ecHHHHHHHHhcCCEEEeCCcCcCCcHHHHHHHHcCCcceEccc
Confidence            444445667899999999999999 9999999999987664433

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=96.52  E-value=2.4  Score=49.14  Aligned_cols=292  Identities=16%  Similarity=0.076  Sum_probs=169.8

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CcHHHHHH
Q 002729           33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF-AECYGNMANAWKEKGDIDLAIRYYLVAIELRP-----NFADAWSN  106 (887)
Q Consensus        33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~  106 (887)
                      .+.+..-+..+...|...+|++..-.+  .+|.. +......+.-+...++..-    +..+++.-|     +++.....
T Consensus       347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~~lsl----l~~~~~~lP~~~l~~~P~Lvll  420 (894)
T COG2909         347 KELHRAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGSELSL----LLAWLKALPAELLASTPRLVLL  420 (894)
T ss_pred             hHHHHHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhcccchHH----HHHHHHhCCHHHHhhCchHHHH
Confidence            556666667777788888887765433  12221 1122222333333343322    222222222     23455566


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-----HHHH
Q 002729          107 LASAYMRKGRLNEAAQCCRQALALNPL---------LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF-----AIAW  172 (887)
Q Consensus       107 la~~~~~~g~~~~A~~~~~~~l~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~  172 (887)
                      .+.......++.+|..++.++...-+.         .....-..+.+....|++++|++..+.++..-|.+     ....
T Consensus       421 ~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~  500 (894)
T COG2909         421 QAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVAL  500 (894)
T ss_pred             HHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhh
Confidence            677777889999999998888665332         12344556778888999999999999999876654     4567


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----H--HHHHHHHHHHHHcCCh--HHHHHHHHHHHhh----CCC-hhHH
Q 002729          173 SNLAGLFMESGDLNRALQYYKEAVKLKPTF----P--DAYLNLGNVYKALGMP--QEAIMCYQRAVQT----RPN-AIAF  239 (887)
Q Consensus       173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~----~--~~~~~l~~~~~~~g~~--~~A~~~~~~~~~~----~p~-~~~~  239 (887)
                      ..++.+..-.|++++|..+...+.+.....    -  .+....+.++..+|+.  .+....+...-..    .|. ....
T Consensus       501 sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~  580 (894)
T COG2909         501 SVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLV  580 (894)
T ss_pred             hhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHH
Confidence            778889999999999999988887763221    1  2334456777788833  3333333332221    222 1222


Q ss_pred             hhHHHHHHHcCChHHHHHHHHHHHh----cCCCcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-hH------
Q 002729          240 GNLASTYYERGQADMAILYYKQAIG----CDPRFLE---AYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH-PQ------  305 (887)
Q Consensus       240 ~~la~~~~~~g~~~~A~~~~~~~l~----~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~------  305 (887)
                      ...+.++...-+++.+..-..+.++    ..|....   .++.++.+....|++++|...+.++.....+. +.      
T Consensus       581 ~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~  660 (894)
T COG2909         581 RIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA  660 (894)
T ss_pred             HHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence            2222222222225555444444442    2233222   23478999999999999999998887653222 11      


Q ss_pred             HHHhHHHHHHHcCChhHHHHHHHHH
Q 002729          306 ALTNLGNIYMEWNMLPAAASYYKAT  330 (887)
Q Consensus       306 ~~~~l~~~~~~~g~~~~A~~~~~~~  330 (887)
                      +...........|+.++|.....+.
T Consensus       661 ~~~v~~~lwl~qg~~~~a~~~l~~s  685 (894)
T COG2909         661 AYKVKLILWLAQGDKELAAEWLLKS  685 (894)
T ss_pred             HHHhhHHHhcccCCHHHHHHHHHhc
Confidence            1111222334578888887777663

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.51  E-value=0.34  Score=53.05  Aligned_cols=21  Identities=24%  Similarity=0.300  Sum_probs=12.0

Q ss_pred             HHHHHHHHcCChHHHHHHHHH
Q 002729          140 NLGNLMKAQGLVQEAYSCYLE  160 (887)
Q Consensus       140 ~la~~~~~~g~~~~A~~~~~~  160 (887)
                      .++..+.-.|++.+|.++|.+
T Consensus       637 LlA~~~Ay~gKF~EAAklFk~  657 (1081)
T KOG1538|consen  637 LLADVFAYQGKFHEAAKLFKR  657 (1081)
T ss_pred             HHHHHHHhhhhHHHHHHHHHH
Confidence            345555566666666555543

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=96.46  E-value=2.4  Score=48.50  Aligned_cols=411  Identities=11%  Similarity=0.050  Sum_probs=243.4

Q ss_pred             HHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH---HcCCHHHHHHHHHH
Q 002729           16 KQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWK---EKGDIDLAIRYYLV   92 (887)
Q Consensus        16 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~   92 (887)
                      ++=+.-++.-+..++.+......|...+...|+.++-...-.++.+..|..+..|.....-..   ..++-.++...|++
T Consensus        96 ~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ek  175 (881)
T KOG0128|consen   96 NQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEK  175 (881)
T ss_pred             hhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHH
Confidence            344555666666777888888999999999999998888888888888888887776555432   34677888899999


Q ss_pred             HHhcCCCcHHHHHHHHHHHH-------HcCChHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHcCChHHHHHHH
Q 002729           93 AIELRPNFADAWSNLASAYM-------RKGRLNEAAQCCRQALALNP-------LLVDAHSNLGNLMKAQGLVQEAYSCY  158 (887)
Q Consensus        93 al~~~p~~~~~~~~la~~~~-------~~g~~~~A~~~~~~~l~~~p-------~~~~~~~~la~~~~~~g~~~~A~~~~  158 (887)
                      ++.-. +++..|...+....       ..++++.-...|.+++..-.       .....+..+-..+...-..++-+.++
T Consensus       176 al~dy-~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~  254 (881)
T KOG0128|consen  176 ALGDY-NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALF  254 (881)
T ss_pred             Hhccc-ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            98643 34555555554443       44678888888888876532       12334555555555555556667777


Q ss_pred             HHHHhhCCChHHH----HHHHH--H-HHHHcCCHHHHHHHHHH-------HHhhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 002729          159 LEALRIQPTFAIA----WSNLA--G-LFMESGDLNRALQYYKE-------AVKLKPTFPDAYLNLGNVYKALGMPQEAIM  224 (887)
Q Consensus       159 ~~al~~~p~~~~~----~~~la--~-~~~~~g~~~~A~~~~~~-------~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~  224 (887)
                      ...+... -+..+    |....  . ......+++.|.+.+.+       .+...+.....|..+.......|..-.-..
T Consensus       255 ~~el~~~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l  333 (881)
T KOG0128|consen  255 VRELKQP-LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQL  333 (881)
T ss_pred             HHHHhcc-chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHH
Confidence            6666543 22111    11111  1 11223445555444333       333344444567777788888899888888


Q ss_pred             HHHHHHhhCCC-hhHHhhHHHHH-HHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCC
Q 002729          225 CYQRAVQTRPN-AIAFGNLASTY-YERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGR-VDEAIQCYNQCLSLQP  301 (887)
Q Consensus       225 ~~~~~~~~~p~-~~~~~~la~~~-~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p  301 (887)
                      .++++....+. ...|...+... ..++-.+.+...+.+++...|-....|...-..+.+.+. ...-...+.+.+...-
T Consensus       334 ~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~  413 (881)
T KOG0128|consen  334 IEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMTV  413 (881)
T ss_pred             HHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHH
Confidence            88888876554 44444443332 233445556677777777777776555544433333332 2233344444443211


Q ss_pred             CChHHHHhHHHHHHHcC------ChhHHHHHHHHHH-------hc-cCCCchhHhhHHHHHH-HcCCHHHHHHHHHHHHh
Q 002729          302 SHPQALTNLGNIYMEWN------MLPAAASYYKATL-------AV-TTGLSAPFNNLAVIYK-QQGNYADAISCYNEVLR  366 (887)
Q Consensus       302 ~~~~~~~~l~~~~~~~g------~~~~A~~~~~~~~-------~~-~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~  366 (887)
                         ..++........++      +++.-.+.|+.+.       .. .......+...|.++. .+++.+.+..+.+..+.
T Consensus       414 ---~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imt  490 (881)
T KOG0128|consen  414 ---ELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMT  490 (881)
T ss_pred             ---HHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhcccc
Confidence               11111122222222      2333333343333       22 1112233444555544 46789999999988887


Q ss_pred             cCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCc-HHHHHHHHHHHHhCCCHHHHHHHHHH
Q 002729          367 IDPLAAD-GLVNRGNTYKEIGRVTDAIQDYIRAITIR--PTM-AEAHANLASAYKDSGHVEAAIKSYKQ  431 (887)
Q Consensus       367 ~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~-~~~~~~la~~~~~~g~~~~A~~~~~~  431 (887)
                      ....+.. .|+.....-...|+...+..++++++...  |++ -+++..+-......|.++.....-.+
T Consensus       491 y~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~~~~  559 (881)
T KOG0128|consen  491 YGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDLCPEK  559 (881)
T ss_pred             CCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhhhHHh
Confidence            7665555 78888888888899999999888887653  432 23455555555566676665555444

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.45  E-value=0.0053  Score=39.97  Aligned_cols=32  Identities=41%  Similarity=0.615  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 002729          407 EAHANLASAYKDSGHVEAAIKSYKQALLLRPD  438 (887)
Q Consensus       407 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  438 (887)
                      .+++.+|.+|..+|++++|.+.|+++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            35666666666666666666666666666663

...

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=96.40  E-value=1.1  Score=44.38  Aligned_cols=53  Identities=19%  Similarity=0.206  Sum_probs=40.9

Q ss_pred             hHHHHHHHhcCCHHHHHHHHHHHHhhCC--------CchhHHHHHHHHHHhcCCHHHHHHH
Q 002729            3 MALAHQMYKSGSYKQALEHSNSVYERNP--------LRTDNLLLLGAIYYQLHDYDMCIAR   55 (887)
Q Consensus         3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~   55 (887)
                      +++|+...+.+++++|+..|.+++....        ....+...++..|...|++..--+.
T Consensus         7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~   67 (421)
T COG5159           7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDT   67 (421)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHH
Confidence            5788999999999999999999987632        1245677888889988887654433

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=96.36  E-value=0.034  Score=46.73  Aligned_cols=103  Identities=21%  Similarity=0.203  Sum_probs=67.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCch---hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002729            5 LAHQMYKSGSYKQALEHSNSVYERNPLRT---DNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG   81 (887)
Q Consensus         5 la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g   81 (887)
                      +|..++.+||+-+|+++.+.++..++++.   ..+...|.++.++.            .+.+..+...-+.         
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA------------~~ten~d~k~~yL---------   60 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLA------------KKTENPDVKFRYL---------   60 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHH------------HhccCchHHHHHH---------
Confidence            57889999999999999999998887665   34455555554432            2222222222222         


Q ss_pred             CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 002729           82 DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALAL  130 (887)
Q Consensus        82 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  130 (887)
                        -.++++|.++..+.|..+..++.+|.-+.....|+++..-.++++..
T Consensus        61 --l~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   61 --LGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             --HHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence              23566677777777777777777776666666677777777666654

>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]

Probab=96.34  E-value=0.067  Score=55.89  Aligned_cols=301  Identities=14%  Similarity=0.133  Sum_probs=181.0

Q ss_pred             cceeeeecCCCCCChhHHhhhHHhhcCCCCC-cEEEEEecCCCCChHHHHHHHhhcCce-----EECC--CCC-------
Q 002729          536 RLRVGYVSSDFGNHPLSHLMGSVFGMHNKEN-VEVFCYALSPNDGTEWRQRTQSEAEHF-----VDVS--AMS-------  600 (887)
Q Consensus       536 ~lriGyvs~d~~~h~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~--~~~-------  600 (887)
                      .+||-.|++   .-|-..-+.+++..++... ||.++.++|+..+.++...+.....-.     .++.  +-+       
T Consensus         3 ~~Kv~~I~G---TRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i~~pdy~L~i~~~~~tl~~~t~~   79 (383)
T COG0381           3 MLKVLTIFG---TRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGIRKPDYDLNIMKPGQTLGEITGN   79 (383)
T ss_pred             ceEEEEEEe---cCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHHHHHhCCCCCCcchhccccCCCHHHHHHH
Confidence            466777764   5777778889999888876 999999999988655555554444322     2222  111       


Q ss_pred             -HHHHHHHHHhCCCeEEEecCCcCCCCchhhhh------cCCCceEEeccccCCCCCCCcccEE------------EecC
Q 002729          601 -SDMIAKLINEDKIQILINLNGYTKGARNEIFA------MQPAPIQVSYMGFPGTTGASYIDYL------------VTDE  661 (887)
Q Consensus       601 -~~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~------~r~apvq~~~~g~~~t~g~~~~d~~------------~~d~  661 (887)
                       ...+-+.+.+.++|+++-..     .+...++      +.-=||     ||-. -|+.+.|-+            +|+-
T Consensus        80 ~i~~~~~vl~~~kPD~VlVhG-----DT~t~lA~alaa~~~~IpV-----~HvE-AGlRt~~~~~PEE~NR~l~~~~S~~  148 (383)
T COG0381          80 IIEGLSKVLEEEKPDLVLVHG-----DTNTTLAGALAAFYLKIPV-----GHVE-AGLRTGDLYFPEEINRRLTSHLSDL  148 (383)
T ss_pred             HHHHHHHHHHhhCCCEEEEeC-----CcchHHHHHHHHHHhCCce-----EEEe-cccccCCCCCcHHHHHHHHHHhhhh
Confidence             14556777889999764322     2222222      122233     2222 233333322            3333


Q ss_pred             ccCCCCcCC-------CCccceeecCCccccCCCccccccCCCCCCCCCCCC-CCCCCCcEEEEecCCCC---CCCHHHH
Q 002729          662 FVSPLRYAH-------IYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSD-YGLPEDKFIFACFNQLY---KMDPEIF  730 (887)
Q Consensus       662 ~~~p~~~~~-------~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~-~~l~~~~~~~~~~~~~~---k~~~~~~  730 (887)
                      ...|.+...       ...+++.-.=++.+-.- .......  ......... ++.++..++..++.|-.   +.-....
T Consensus       149 hfapte~ar~nLl~EG~~~~~IfvtGnt~iDal-~~~~~~~--~~~~~~~~~~~~~~~~~~iLvT~HRreN~~~~~~~i~  225 (383)
T COG0381         149 HFAPTEIARKNLLREGVPEKRIFVTGNTVIDAL-LNTRDRV--LEDSKILAKGLDDKDKKYILVTAHRRENVGEPLEEIC  225 (383)
T ss_pred             hcCChHHHHHHHHHcCCCccceEEeCChHHHHH-HHHHhhh--ccchhhHHhhhccccCcEEEEEcchhhcccccHHHHH
Confidence            445544321       11112221111100000 0000000  000011111 44555568888888875   4466777


Q ss_pred             HHHHHHHhhcCCceEEEecCChhhHHHHHHHH-HHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCCchhHHHHH
Q 002729          731 NTWCNILRRVPNSALWLLRFPAAGEMRLRAYA-VAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDIL  809 (887)
Q Consensus       731 ~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~-~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g~~t~~eal  809 (887)
                      .+..+|+...|+..++..-.+.   .++++.. ..++- .+||.+.+.+.+.+++.++..|-+.|    -.+|.-.=||-
T Consensus       226 ~al~~i~~~~~~~~viyp~H~~---~~v~e~~~~~L~~-~~~v~li~pl~~~~f~~L~~~a~~il----tDSGgiqEEAp  297 (383)
T COG0381         226 EALREIAEEYPDVIVIYPVHPR---PRVRELVLKRLKN-VERVKLIDPLGYLDFHNLMKNAFLIL----TDSGGIQEEAP  297 (383)
T ss_pred             HHHHHHHHhCCCceEEEeCCCC---hhhhHHHHHHhCC-CCcEEEeCCcchHHHHHHHHhceEEE----ecCCchhhhHH
Confidence            7788899999887776644332   3343333 45554 57899999999999999999998887    45577778999


Q ss_pred             HhCCceeeeccc-chhhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHH
Q 002729          810 WAGLPMITLPLE-KMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTN  868 (887)
Q Consensus       810 ~~gvPvvt~~g~-~~~~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l~~d~~~~~~~~~  868 (887)
                      ..|+||+++... .-++++.+      |-.- +|-.+.+.-++.+..+..|++..++|+.
T Consensus       298 ~lg~Pvl~lR~~TERPE~v~a------gt~~-lvg~~~~~i~~~~~~ll~~~~~~~~m~~  350 (383)
T COG0381         298 SLGKPVLVLRDTTERPEGVEA------GTNI-LVGTDEENILDAATELLEDEEFYERMSN  350 (383)
T ss_pred             hcCCcEEeeccCCCCccceec------CceE-EeCccHHHHHHHHHHHhhChHHHHHHhc
Confidence            999999988644 56677776      5555 7778889999999999999998887764

>COG1817 Uncharacterized protein conserved in archaea [Function unknown]

Probab=96.27  E-value=0.25  Score=49.65  Aligned_cols=278  Identities=15%  Similarity=0.139  Sum_probs=145.4

Q ss_pred             ecCCCCCChhHHhhhHHhhcCCCCCcEEEEEecCCCCChHHHHHHHhhcCceEECCCC---C-----------HHHHHHH
Q 002729          542 VSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAM---S-----------SDMIAKL  607 (887)
Q Consensus       542 vs~d~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----------~~~~~~~  607 (887)
                      |+-|..+.|..+|+..++..+.+.++||.+=+-..   +.+.+.++..--.+..+..-   +           .-.+.+.
T Consensus         3 VwiDI~n~~hvhfFk~lI~elekkG~ev~iT~rd~---~~v~~LLd~ygf~~~~Igk~g~~tl~~Kl~~~~eR~~~L~ki   79 (346)
T COG1817           3 VWIDIGNPPHVHFFKNLIWELEKKGHEVLITCRDF---GVVTELLDLYGFPYKSIGKHGGVTLKEKLLESAERVYKLSKI   79 (346)
T ss_pred             EEEEcCCcchhhHHHHHHHHHHhCCeEEEEEEeec---CcHHHHHHHhCCCeEeecccCCccHHHHHHHHHHHHHHHHHH
Confidence            45677888899999999999999999987644221   23455555443333222211   1           2456889


Q ss_pred             HHhCCCeEEEecCCcCCCCchhhhhcCCCceEEeccccCCCCCCC--------cccEEEecCccCCCCcCC----CCccc
Q 002729          608 INEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGAS--------YIDYLVTDEFVSPLRYAH----IYSEK  675 (887)
Q Consensus       608 i~~~~~dil~~~~~~~~~~~~~~~~~r~apvq~~~~g~~~t~g~~--------~~d~~~~d~~~~p~~~~~----~~~e~  675 (887)
                      |.+.++||.+.  -|+.          .+|-....+|-|.-.-.+        .+-+=+++.++.|.....    .+-.+
T Consensus        80 ~~~~kpdv~i~--~~s~----------~l~rvafgLg~psIi~~D~ehA~~qnkl~~Pla~~ii~P~~~~~~~~~~~G~~  147 (346)
T COG1817          80 IAEFKPDVAIG--KHSP----------ELPRVAFGLGIPSIIFVDNEHAEAQNKLTLPLADVIITPEAIDEEELLDFGAD  147 (346)
T ss_pred             HhhcCCceEee--cCCc----------chhhHHhhcCCceEEecCChhHHHHhhcchhhhhheecccccchHHHHHhCCC
Confidence            99999999986  3331          122222223333211110        111113444455544433    12222


Q ss_pred             ---eeecCCc-cccCCCccccccCCCCCCCCCCCCCCCCCC--cEE--EEecCCCCCCCHHHHHHHHHHHhhcCCceEEE
Q 002729          676 ---LVHVPHC-YFVNDYKQKNMDVLDPNCQPKRSDYGLPED--KFI--FACFNQLYKMDPEIFNTWCNILRRVPNSALWL  747 (887)
Q Consensus       676 ---~~~lp~~-~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~--~~~--~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~  747 (887)
                         +...++. ...+.+.     + .|. +..-.++|+.++  +++  +.+.+..+=+-+.-+..-.++++..++--.++
T Consensus       148 p~~i~~~~giae~~~v~~-----f-~pd-~evlkeLgl~~~~~yIVmRpe~~~A~y~~g~~~~~~~~~li~~l~k~giV~  220 (346)
T COG1817         148 PNKISGYNGIAELANVYG-----F-VPD-PEVLKELGLEEGETYIVMRPEPWGAHYDNGDRGISVLPDLIKELKKYGIVL  220 (346)
T ss_pred             ccceecccceeEEeeccc-----C-CCC-HHHHHHcCCCCCCceEEEeeccccceeeccccchhhHHHHHHHHHhCcEEE
Confidence               3333331 1111110     1 111 234456788765  444  44444444333333444455555444433333


Q ss_pred             ecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCCchhHHHHHHhCCceeee-cccchhhh
Q 002729          748 LRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITL-PLEKMATR  826 (887)
Q Consensus       748 ~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~-~g~~~~~r  826 (887)
                      +....    ..++.++...     ++.. .-+..+++.++--+|+++    -.|||-.-||...|+|.|+. +|...  -
T Consensus       221 ipr~~----~~~eife~~~-----n~i~-pk~~vD~l~Llyya~lvi----g~ggTMarEaAlLGtpaIs~~pGkll--~  284 (346)
T COG1817         221 IPREK----EQAEIFEGYR-----NIII-PKKAVDTLSLLYYATLVI----GAGGTMAREAALLGTPAISCYPGKLL--A  284 (346)
T ss_pred             ecCch----hHHHHHhhhc-----cccC-CcccccHHHHHhhhheee----cCCchHHHHHHHhCCceEEecCCccc--c
Confidence            32211    1233333221     1122 223456666666688876    56688889999999999975 44311  1


Q ss_pred             hHHHHHHhcCCCCcccc-CCHHHHHHHHHHHhcCHH
Q 002729          827 VAGSLCLATGLGEEMIV-NSMKEYEERAVSLALDRQ  861 (887)
Q Consensus       827 ~~~~~l~~~g~~~~~~~-~~~~~y~~~a~~l~~d~~  861 (887)
                      + .-.+-..|+   +.- .|+.+-++.|+++..++.
T Consensus       285 v-dk~lie~G~---~~~s~~~~~~~~~a~~~l~~~~  316 (346)
T COG1817         285 V-DKYLIEKGL---LYHSTDEIAIVEYAVRNLKYRR  316 (346)
T ss_pred             c-cHHHHhcCc---eeecCCHHHHHHHHHHHhhchh
Confidence            1 235666666   343 788899999999998774

>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]

Probab=96.24  E-value=0.05  Score=56.62  Aligned_cols=164  Identities=19%  Similarity=0.222  Sum_probs=100.3

Q ss_pred             CCCCCCCCCCCCCCcEEEEecCCC-----CCCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEE
Q 002729          699 NCQPKRSDYGLPEDKFIFACFNQL-----YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQII  773 (887)
Q Consensus       699 ~~~~~r~~~~l~~~~~~~~~~~~~-----~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~  773 (887)
                      .+...|+.+|++.+.-+++-+--.     .++.|-+.++..++..+.|+.++++.-.++. ..+++..+.......-.++
T Consensus       174 ~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~~-~~~~~~~~~~~~~~~~~~~  252 (381)
T COG0763         174 DREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNAK-YRRIIEEALKWEVAGLSLI  252 (381)
T ss_pred             cHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcHH-HHHHHHHHhhccccCceEE
Confidence            334478889998876665433222     3678889999888888999999998766555 3344444443333212233


Q ss_pred             EcCCCCcHHHHHhccCCcEEecCCCCCCchhHHHHHHhCCcee-eecccchhhhhHHHH--HHhcCCCCccccC------
Q 002729          774 FTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMI-TLPLEKMATRVAGSL--CLATGLGEEMIVN------  844 (887)
Q Consensus       774 ~~~~~~~~~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvv-t~~g~~~~~r~~~~~--l~~~g~~~~~~~~------  844 (887)
                      +.+.    +-...+..||++|    -.+||.++|++-+|+|.| +..-..+.-...--.  +-.++||. +++.      
T Consensus       253 ~~~~----~~~~a~~~aD~al----~aSGT~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpN-Ii~~~~ivPE  323 (381)
T COG0763         253 LIDG----EKRKAFAAADAAL----AASGTATLEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLPN-ILAGREIVPE  323 (381)
T ss_pred             ecCc----hHHHHHHHhhHHH----HhccHHHHHHHHhCCCEEEEEeccHHHHHHHHHhccCCcccchH-HhcCCccchH
Confidence            3332    2344567899998    678999999999999955 444333322222111  12234444 4433      


Q ss_pred             ------CHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 002729          845 ------SMKEYEERAVSLALDRQKLQALTNKLKS  872 (887)
Q Consensus       845 ------~~~~y~~~a~~l~~d~~~~~~~~~~~~~  872 (887)
                            +++........+..|...++++.+..++
T Consensus       324 liq~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~  357 (381)
T COG0763         324 LIQEDCTPENLARALEELLLNGDRREALKEKFRE  357 (381)
T ss_pred             HHhhhcCHHHHHHHHHHHhcChHhHHHHHHHHHH
Confidence                  3566666666677788666666655443

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.22  E-value=0.31  Score=47.49  Aligned_cols=17  Identities=6%  Similarity=0.300  Sum_probs=12.1

Q ss_pred             cccceeeeecCCCCCCh
Q 002729          534 LRRLRVGYVSSDFGNHP  550 (887)
Q Consensus       534 ~~~lriGyvs~d~~~h~  550 (887)
                      -.+++|-|+|..+.-.+
T Consensus       362 Yt~i~Ipfis~~Lnv~~  378 (440)
T KOG1464|consen  362 YTNIGIPFISKELNVPE  378 (440)
T ss_pred             ccccCchhhHhhcCCCH
Confidence            35688888888876543

>PRK11619 lytic murein transglycosylase; Provisional

Probab=96.18  E-value=3.7  Score=47.79  Aligned_cols=402  Identities=12%  Similarity=0.002  Sum_probs=202.5

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCcHHHHHHHHHH-
Q 002729           34 DNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG--DIDLAIRYYLVAIELRPNFADAWSNLASA-  110 (887)
Q Consensus        34 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~-  110 (887)
                      ...+.-+....+.|++..+.+...++ ...|-.+  |..........+  .++    -+...++..|+.+......... 
T Consensus        34 r~~f~~A~~a~~~g~~~~~~~~~~~l-~d~pL~~--yl~y~~L~~~l~~~~~~----ev~~Fl~~~~~~P~~~~Lr~~~l  106 (644)
T PRK11619         34 RQRYQQIKQAWDNRQMDVVEQLMPTL-KDYPLYP--YLEYRQLTQDLMNQPAV----QVTNFIRANPTLPPARSLQSRFV  106 (644)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHhc-cCCCcHh--HHHHHHHHhccccCCHH----HHHHHHHHCCCCchHHHHHHHHH
Confidence            45567777788888888876665543 3333322  222222222222  333    3444455566655443333332 


Q ss_pred             --HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHH
Q 002729          111 --YMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRA  188 (887)
Q Consensus       111 --~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  188 (887)
                        +.+.+++..-+.++    ...|.+.......+......|+.++|.....++-......+.....+-..+.+.|.....
T Consensus       107 ~~La~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~  182 (644)
T PRK11619        107 NELARREDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPL  182 (644)
T ss_pred             HHHHHccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHH
Confidence              23445555544422    234777788788888888899988887777776555444444444444444444433332


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHH-----------HH-cCChHHHHHHHHHHHhhCCC--hhHHhhHHHHHHHcCChHH
Q 002729          189 LQYYKEAVKLKPTFPDAYLNLGNVY-----------KA-LGMPQEAIMCYQRAVQTRPN--AIAFGNLASTYYERGQADM  254 (887)
Q Consensus       189 ~~~~~~~l~~~~~~~~~~~~l~~~~-----------~~-~g~~~~A~~~~~~~~~~~p~--~~~~~~la~~~~~~g~~~~  254 (887)
                      ...-+--+....++......+...+           .. ..+...+...+..   ..++  ......++..-....+.+.
T Consensus       183 d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~---~~~~~~~~~~~~~~l~Rlar~d~~~  259 (644)
T PRK11619        183 AYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART---TGPTDFTRQMAAVAFASVARQDAEN  259 (644)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc---cCCChhhHHHHHHHHHHHHHhCHHH
Confidence            2111111111111111111111111           10 0111111111111   1112  1122223333344566677


Q ss_pred             HHHHHHHHHhcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHH
Q 002729          255 AILYYKQAIGCDPRFL----EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT  330 (887)
Q Consensus       255 A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  330 (887)
                      |...+.+......-..    .++..++.-....+...+|...+..+.... .+....-.........++++.+...+..+
T Consensus       260 A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~-~~~~~~e~r~r~Al~~~dw~~~~~~i~~L  338 (644)
T PRK11619        260 ARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS-QSTSLLERRVRMALGTGDRRGLNTWLARL  338 (644)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc-CCcHHHHHHHHHHHHccCHHHHHHHHHhc
Confidence            8888876543332221    233444444444332566777776654332 23333444444555788888888777776


Q ss_pred             HhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH---HHH-HHHHHHHHhcCCCcH
Q 002729          331 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRV---TDA-IQDYIRAITIRPTMA  406 (887)
Q Consensus       331 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~---~~A-~~~~~~al~~~p~~~  406 (887)
                      -..........+-+|..+...|+.++|...|+++..  +.+  .|-.++.-  ++|..   ... ...-...+..     
T Consensus       339 ~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~~~--fYG~LAa~--~Lg~~~~~~~~~~~~~~~~~~~-----  407 (644)
T PRK11619        339 PMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--QRG--FYPMVAAQ--RLGEEYPLKIDKAPKPDSALTQ-----  407 (644)
T ss_pred             CHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--CCC--cHHHHHHH--HcCCCCCCCCCCCCchhhhhcc-----
Confidence            555555667778888888888999999999988754  222  22222211  12221   000 0000011111     


Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHhhhcCChhhHhHHH
Q 002729          407 EAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMF  463 (887)
Q Consensus       407 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~  463 (887)
                      .-....+..+...|+..+|...+..++..  .++.....++......|.+.-+....
T Consensus       408 ~~~~~ra~~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~~~ai~~~  462 (644)
T PRK11619        408 GPEMARVRELMYWNMDNTARSEWANLVAS--RSKTEQAQLARYAFNQQWWDLSVQAT  462 (644)
T ss_pred             ChHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            12355677888999999999999988875  23445555555555556544444333

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.13  E-value=0.28  Score=44.70  Aligned_cols=81  Identities=25%  Similarity=0.124  Sum_probs=41.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002729           37 LLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGR  116 (887)
Q Consensus        37 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  116 (887)
                      ......-...++.+++...+..+--+.|+.++.-..-|..+...|++.+|+.+++.+.+..|..+.+--.++.|+...|+
T Consensus        14 ie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D   93 (160)
T PF09613_consen   14 IEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD   93 (160)
T ss_pred             HHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence            33334444445555555555555555555555555555555555555555555555555555555444555555555544


Q ss_pred             h
Q 002729          117 L  117 (887)
Q Consensus       117 ~  117 (887)
                      .
T Consensus        94 ~   94 (160)
T PF09613_consen   94 P   94 (160)
T ss_pred             h
Confidence            3

>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II

Probab=96.10  E-value=0.028  Score=60.28  Aligned_cols=116  Identities=10%  Similarity=-0.016  Sum_probs=68.0

Q ss_pred             CCCCCCC--CcEEEEecCC--CCCC-CHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCC
Q 002729          705 SDYGLPE--DKFIFACFNQ--LYKM-DPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAM  779 (887)
Q Consensus       705 ~~~~l~~--~~~~~~~~~~--~~k~-~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~  779 (887)
                      ..++++.  ..+++....+  ..|. ..+-+....+.+.. .+..+++.|.+.+ ++...+....  .....+.+.|..+
T Consensus       166 ~~~~~~~~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~-~~~~ivl~G~~~e-~~~~~~i~~~--~~~~~~~l~g~~s  241 (334)
T TIGR02195       166 AKFGLDTERPIIAFCPGAEFGPAKRWPHEHYAELAKRLID-QGYQVVLFGSAKD-HPAGNEIEAL--LPGELRNLAGETS  241 (334)
T ss_pred             HHcCCCCCCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHH-CCCEEEEEEChhh-HHHHHHHHHh--CCcccccCCCCCC
Confidence            3445543  3344443332  4454 44444444444433 3566777775543 3333332222  2223345889889


Q ss_pred             cHHHHHhccCCcEEecCCCCCCchhHHHHHHhCCceeeecccchhhhhH
Q 002729          780 KQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVA  828 (887)
Q Consensus       780 ~~~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~~~r~~  828 (887)
                      -.+..+.+..+|+++-  .-  +-.+==|-++|+|+|++-|++-+.+.+
T Consensus       242 L~el~ali~~a~l~I~--~D--SGp~HlAaA~~~P~i~lfG~t~p~~~~  286 (334)
T TIGR02195       242 LDEAVDLIALAKAVVT--ND--SGLMHVAAALNRPLVALYGSTSPDFTP  286 (334)
T ss_pred             HHHHHHHHHhCCEEEe--eC--CHHHHHHHHcCCCEEEEECCCChhhcC
Confidence            9999999999999982  12  222334678999999999998877643

This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=96.07  E-value=0.32  Score=52.03  Aligned_cols=168  Identities=18%  Similarity=0.045  Sum_probs=83.2

Q ss_pred             HhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HH
Q 002729           26 YERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF---AD  102 (887)
Q Consensus        26 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~  102 (887)
                      +..+|.+.+++..++.++..+|+.+.|.+.+++++-.........+.....-...|.   +.--|     ..+.|   -.
T Consensus        33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~---~rL~~-----~~~eNR~ffl  104 (360)
T PF04910_consen   33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGN---CRLDY-----RRPENRQFFL  104 (360)
T ss_pred             HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCc---cccCC-----ccccchHHHH
Confidence            456777788888888888888888888887777753211000000000000000000   00000     01112   12


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHH-HHHHHcCChHHHHHHHHHHHhhCCC-----hHHHHHHH
Q 002729          103 AWSNLASAYMRKGRLNEAAQCCRQALALNPL-LVDAHSNLG-NLMKAQGLVQEAYSCYLEALRIQPT-----FAIAWSNL  175 (887)
Q Consensus       103 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l  175 (887)
                      +.......+.+.|-+..|.++.+-.+.++|. |+-...... ....+.++++--++.++........     -+...+..
T Consensus       105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~  184 (360)
T PF04910_consen  105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSI  184 (360)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHH
Confidence            3444555566666666666666666666665 444333322 3334455555555555443331111     12334555


Q ss_pred             HHHHHHcCCH---------------HHHHHHHHHHHhhCCC
Q 002729          176 AGLFMESGDL---------------NRALQYYKEAVKLKPT  201 (887)
Q Consensus       176 a~~~~~~g~~---------------~~A~~~~~~~l~~~~~  201 (887)
                      +.++...++.               ++|...+.+++...|.
T Consensus       185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~  225 (360)
T PF04910_consen  185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW  225 (360)
T ss_pred             HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence            5555556555               6777777777776654

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative

Probab=96.07  E-value=0.058  Score=58.10  Aligned_cols=115  Identities=13%  Similarity=0.103  Sum_probs=66.6

Q ss_pred             CCCCCcEEEEecCC-CCCC-CHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCc-EEEcCCCCcHHHH
Q 002729          708 GLPEDKFIFACFNQ-LYKM-DPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQ-IIFTDVAMKQEHI  784 (887)
Q Consensus       708 ~l~~~~~~~~~~~~-~~k~-~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r-~~~~~~~~~~~~~  784 (887)
                      |+..+.+++....+ ..|. ..+-+...++-+.. .+..+++.|.+...+..+.+.+.+. ....+ +.+.|.++-.+..
T Consensus       178 ~~~~~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~-~~~~ivl~g~p~~~e~~~~~~i~~~-~~~~~~~~l~g~~sL~el~  255 (344)
T TIGR02201       178 GVGQNYIVIQPTSRWFFKCWDNDRFSALIDALHA-RGYEVVLTSGPDKDELAMVNEIAQG-CQTPRVTSLAGKLTLPQLA  255 (344)
T ss_pred             CCCCCEEEEeCCCCccccCCCHHHHHHHHHHHHh-CCCeEEEecCCCHHHHHHHHHHHhh-CCCCcccccCCCCCHHHHH
Confidence            34445555554443 3344 33333333333333 3566777775432222222333222 22334 5578999999999


Q ss_pred             HhccCCcEEecCCCCCCchhHHHHHHhCCceeeecccchhhhhH
Q 002729          785 RRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVA  828 (887)
Q Consensus       785 ~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~~~r~~  828 (887)
                      +.+..+|+++-.  -  +-.+==|-++|+|+|++-|++-..+.+
T Consensus       256 ali~~a~l~Vs~--D--SGp~HlAaA~g~p~v~Lfgpt~p~~~~  295 (344)
T TIGR02201       256 ALIDHARLFIGV--D--SVPMHMAAALGTPLVALFGPSKHIFWR  295 (344)
T ss_pred             HHHHhCCEEEec--C--CHHHHHHHHcCCCEEEEECCCCccccc
Confidence            999999999822  2  223334778999999999987766554

This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.06  E-value=0.41  Score=46.71  Aligned_cols=50  Identities=12%  Similarity=0.090  Sum_probs=35.6

Q ss_pred             cCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002729           46 LHDYDMCIARNEEALRLEPRF----AECYGNMANAWKEKGDIDLAIRYYLVAIE   95 (887)
Q Consensus        46 ~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~   95 (887)
                      ..+.++|+..|++++++.+..    ..++..+..+++++|++++-...|.+++.
T Consensus        40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT   93 (440)
T KOG1464|consen   40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT   93 (440)
T ss_pred             ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            346778888888888777654    34566677777777777777777777654

>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional

Probab=96.03  E-value=0.049  Score=58.83  Aligned_cols=116  Identities=13%  Similarity=0.074  Sum_probs=67.5

Q ss_pred             CCCCCcEEEEecCC-CCCC-CHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHH
Q 002729          708 GLPEDKFIFACFNQ-LYKM-DPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIR  785 (887)
Q Consensus       708 ~l~~~~~~~~~~~~-~~k~-~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~  785 (887)
                      |++...+++....+ ..|. .++-+....+.|.. .+..+++.|.+...+....+.+.+..-.+..+.+.|.++-.+..+
T Consensus       180 ~~~~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~-~~~~vvl~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~a  258 (352)
T PRK10422        180 GVTQNYVVIQPTARQIFKCWDNDKFSAVIDALQA-RGYEVVLTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGA  258 (352)
T ss_pred             CCCCCeEEEecCCCccccCCCHHHHHHHHHHHHH-CCCeEEEEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHH
Confidence            44445555543333 3455 44444444444433 356677776543212222222322211123466889999999999


Q ss_pred             hccCCcEEecCCCCCCchhHHHHHHhCCceeeecccchhhhhH
Q 002729          786 RSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVA  828 (887)
Q Consensus       786 ~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~~~r~~  828 (887)
                      .+..||+++    -|-+-.+==|-++|+|||++-|++-..+.+
T Consensus       259 li~~a~l~v----~nDSGp~HlAaA~g~P~v~lfGpt~p~~~~  297 (352)
T PRK10422        259 LIDHAQLFI----GVDSAPAHIAAAVNTPLICLFGATDHIFWR  297 (352)
T ss_pred             HHHhCCEEE----ecCCHHHHHHHHcCCCEEEEECCCCccccC
Confidence            999999998    222223334668899999999998776654

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.02  E-value=0.012  Score=38.28  Aligned_cols=30  Identities=23%  Similarity=0.602  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 002729          374 GLVNRGNTYKEIGRVTDAIQDYIRAITIRP  403 (887)
Q Consensus       374 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  403 (887)
                      +++.+|.++..+|++++|++.|+++++++|
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            455666666666666666666666666555

...

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=95.99  E-value=3  Score=45.01  Aligned_cols=101  Identities=15%  Similarity=0.092  Sum_probs=79.7

Q ss_pred             CCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 002729          335 TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKE--IGRVTDAIQDYIRAITIRPTMAEAHANL  412 (887)
Q Consensus       335 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~l  412 (887)
                      ++....-..+-..+.+.|-+.+|.+.|.+...+.|.+...+-.+...-..  .-+...+.++|..++.....+++.|...
T Consensus       457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y  536 (568)
T KOG2396|consen  457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDY  536 (568)
T ss_pred             CceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence            44455556677778888999999999999998888877766655544332  2347888899999998888899999988


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHHc
Q 002729          413 ASAYKDSGHVEAAIKSYKQALLL  435 (887)
Q Consensus       413 a~~~~~~g~~~~A~~~~~~al~~  435 (887)
                      -..-...|..+.+-.+|.+|++.
T Consensus       537 ~~~e~~~g~~en~~~~~~ra~kt  559 (568)
T KOG2396|consen  537 MKEELPLGRPENCGQIYWRAMKT  559 (568)
T ss_pred             HHhhccCCCcccccHHHHHHHHh
Confidence            88888999999999999888874

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.98  E-value=4.2  Score=46.70  Aligned_cols=110  Identities=17%  Similarity=0.176  Sum_probs=58.6

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCh
Q 002729           40 GAIYYQLHDYDMCIARNEEALRLEPR-FAECYGNMANAWKEKGDIDLAIRYYLVAIEL-RPNFADAWSNLASAYMRKGRL  117 (887)
Q Consensus        40 a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~  117 (887)
                      ...+++..-|+-|+.+.+.- ..+++ -.......|..++..|++++|...|-+.+.. +|..      ...-|....+.
T Consensus       341 L~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~------Vi~kfLdaq~I  413 (933)
T KOG2114|consen  341 LDILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSE------VIKKFLDAQRI  413 (933)
T ss_pred             HHHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHH------HHHHhcCHHHH
Confidence            34455666666666655432 12222 2455666677777777777777777776653 2221      11122333334


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 002729          118 NEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYS  156 (887)
Q Consensus       118 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~  156 (887)
                      .+-..+++...+..-.+.+--..|-.+|.++++.++-.+
T Consensus       414 knLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~e  452 (933)
T KOG2114|consen  414 KNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTE  452 (933)
T ss_pred             HHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHH
Confidence            444455555555554444545556667777766655433

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.86  E-value=0.0082  Score=39.65  Aligned_cols=27  Identities=44%  Similarity=0.647  Sum_probs=17.0

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 002729          409 HANLASAYKDSGHVEAAIKSYKQALLL  435 (887)
Q Consensus       409 ~~~la~~~~~~g~~~~A~~~~~~al~~  435 (887)
                      +..||.+|.+.|++++|+++|++++.+
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            556667777777777777777775543

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.86  E-value=0.95  Score=41.35  Aligned_cols=120  Identities=16%  Similarity=0.052  Sum_probs=58.1

Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCh
Q 002729           44 YQLHDYDMCIARNEEALRLEPRF--AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF----ADAWSNLASAYMRKGRL  117 (887)
Q Consensus        44 ~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~  117 (887)
                      .+.+..++|+..|..+-+.+-..  .-+.+..+.+..+.|+-..|+..|..+-...+.-    ..+...-+..+...|.|
T Consensus        69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy  148 (221)
T COG4649          69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY  148 (221)
T ss_pred             HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence            34455555555555554433222  2344455555555566666666665554432220    11233334444555555


Q ss_pred             HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002729          118 NEAAQCCRQALA-LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALR  163 (887)
Q Consensus       118 ~~A~~~~~~~l~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  163 (887)
                      ++.....+..-. .+|-...+...||...++.|++.+|.+.|.++..
T Consensus       149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            555444443321 1233334455556666666666666666665554

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=95.86  E-value=0.014  Score=37.61  Aligned_cols=31  Identities=29%  Similarity=0.427  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 002729          408 AHANLASAYKDSGHVEAAIKSYKQALLLRPD  438 (887)
Q Consensus       408 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  438 (887)
                      +++.+|.++.+.|++++|++.|+++++..|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            4556666666666666666666666666654

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=95.79  E-value=3.6  Score=44.39  Aligned_cols=226  Identities=13%  Similarity=0.069  Sum_probs=115.6

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002729           66 FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLM  145 (887)
Q Consensus        66 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~  145 (887)
                      +...+..+..++.....+.-....+.+++....+ ..++..++++|... ..++-..++++..+.+-++...-..++..|
T Consensus        65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~-kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~y  142 (711)
T COG1747          65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGES-KMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKY  142 (711)
T ss_pred             cchHHHHHHHHhccchHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHH
Confidence            3444455555555555555555666666665433 55666677777666 445566666666666666666666666666


Q ss_pred             HHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 002729          146 KAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMC  225 (887)
Q Consensus       146 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  225 (887)
                      .+ ++.+.+...|.+++...-              -..+...-.+.+++..+.-+++.+....+                
T Consensus       143 Ek-ik~sk~a~~f~Ka~yrfI--------------~~~q~~~i~evWeKL~~~i~dD~D~fl~l----------------  191 (711)
T COG1747         143 EK-IKKSKAAEFFGKALYRFI--------------PRRQNAAIKEVWEKLPELIGDDKDFFLRL----------------  191 (711)
T ss_pred             HH-hchhhHHHHHHHHHHHhc--------------chhhhhhHHHHHHHHHHhccccHHHHHHH----------------
Confidence            55 666666666666553211              01112222344444444444443332222                


Q ss_pred             HHHHHhhCCC---hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002729          226 YQRAVQTRPN---AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS  302 (887)
Q Consensus       226 ~~~~~~~~p~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  302 (887)
                      ..+..+....   ..++..+-.-|....++++|++.+...++.+..+..+.-.+...+...-+              +..
T Consensus       192 ~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~--------------~~~  257 (711)
T COG1747         192 QKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYR--------------GHS  257 (711)
T ss_pred             HHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhc--------------cch
Confidence            1121111111   22333333456667788888888888888777777666555544433110              011


Q ss_pred             ChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCc
Q 002729          303 HPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLS  338 (887)
Q Consensus       303 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  338 (887)
                      +.+-|....++-..-.++.++..-|++.+..+..+-
T Consensus       258 ~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGnF  293 (711)
T COG1747         258 QLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGNF  293 (711)
T ss_pred             hHHHHHHhcchhhccccHHHHHHHHHHHheeccCce
Confidence            111122222333334455666666666666655543

>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS)

Probab=95.78  E-value=0.19  Score=52.19  Aligned_cols=96  Identities=19%  Similarity=0.113  Sum_probs=61.4

Q ss_pred             CHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCCchhH
Q 002729          726 DPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTG  805 (887)
Q Consensus       726 ~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g~~t~  805 (887)
                      ..+.+....+.+... +..+++.|.+.. .+..++.....+ ...-+.+.|..+..+..+.+..+|+++.+=  + |+.-
T Consensus       138 ~~~~~~~l~~~l~~~-~~~ivl~g~~~e-~~~~~~i~~~~~-~~~~~~~~~~~~l~e~~~li~~~~l~I~~D--s-g~~H  211 (279)
T cd03789         138 PAERFAALADRLLAR-GARVVLTGGPAE-RELAEEIAAALG-GPRVVNLAGKTSLRELAALLARADLVVTND--S-GPMH  211 (279)
T ss_pred             CHHHHHHHHHHHHHC-CCEEEEEechhh-HHHHHHHHHhcC-CCccccCcCCCCHHHHHHHHHhCCEEEeeC--C-HHHH
Confidence            444444444444444 677777775443 444444333333 233456788888899999999999998332  2 2222


Q ss_pred             HHHHHhCCceeeecccchhhhhH
Q 002729          806 TDILWAGLPMITLPLEKMATRVA  828 (887)
Q Consensus       806 ~eal~~gvPvvt~~g~~~~~r~~  828 (887)
                       =|.++|+|+|++-|.+-..+.+
T Consensus       212 -lA~a~~~p~i~l~g~~~~~~~~  233 (279)
T cd03789         212 -LAAALGTPTVALFGPTDPARTG  233 (279)
T ss_pred             -HHHHcCCCEEEEECCCCccccC
Confidence             3358899999999988877753

Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.69  E-value=1.1  Score=40.92  Aligned_cols=132  Identities=14%  Similarity=0.106  Sum_probs=80.5

Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-----hhHHhhHHHHHHHcCCh
Q 002729          180 MESGDLNRALQYYKEAVKLKPTFP--DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-----AIAFGNLASTYYERGQA  252 (887)
Q Consensus       180 ~~~g~~~~A~~~~~~~l~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~la~~~~~~g~~  252 (887)
                      .+.++.++|+..|...-+.+-...  -+....+.+....|+...|+..|.++-...+.     ..+...-+..+...|.|
T Consensus        69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy  148 (221)
T COG4649          69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY  148 (221)
T ss_pred             HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence            345666777777776655443322  24556677777778888888888777665443     22334445566677777


Q ss_pred             HHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHH
Q 002729          253 DMAILYYKQAI-GCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGN  312 (887)
Q Consensus       253 ~~A~~~~~~~l-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  312 (887)
                      ++.....+..- ..+|-...+...||..-.+.|++.+|.+.|.++.. +...+....+.+.
T Consensus       149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq  208 (221)
T COG4649         149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQ  208 (221)
T ss_pred             HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHH
Confidence            77666655543 33444455666777777777888888887777665 3333444333333

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=95.69  E-value=0.58  Score=50.07  Aligned_cols=127  Identities=17%  Similarity=0.076  Sum_probs=60.9

Q ss_pred             HhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh---HH
Q 002729           94 IELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF---AI  170 (887)
Q Consensus        94 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~  170 (887)
                      ++.+|-+.+++..++.++..+|+.+.|.+++++++-.........+..-..-...|+-   .--|     ..+.|   ..
T Consensus        33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~---rL~~-----~~~eNR~ffl  104 (360)
T PF04910_consen   33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNC---RLDY-----RRPENRQFFL  104 (360)
T ss_pred             HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCcc---ccCC-----ccccchHHHH
Confidence            3456777777777777777777777777777766532110000000000000000000   0000     01112   23


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH-HHHcCChHHHHHHHHH
Q 002729          171 AWSNLAGLFMESGDLNRALQYYKEAVKLKPT-FPDAYLNLGNV-YKALGMPQEAIMCYQR  228 (887)
Q Consensus       171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~l~~~-~~~~g~~~~A~~~~~~  228 (887)
                      +.......+.+.|-+..|.++.+-++.++|. |+-......+. ..+.++++--++.++.
T Consensus       105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~  164 (360)
T PF04910_consen  105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSES  164 (360)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHh
Confidence            4445566666777777777777777777776 55533333333 3444555544444443

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.66  E-value=0.46  Score=51.49  Aligned_cols=88  Identities=10%  Similarity=-0.072  Sum_probs=47.5

Q ss_pred             HHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002729           18 ALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR----FAECYGNMANAWKEKGDIDLAIRYYLVA   93 (887)
Q Consensus        18 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~a   93 (887)
                      ..+.+....+..|+++...+..+..+...|+.+.|+..++..++  +.    ..-.++.+|.++.-+.+|..|...+...
T Consensus       252 ~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L  329 (546)
T KOG3783|consen  252 CEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLL  329 (546)
T ss_pred             HHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            33344444445566666666666666666666666666665554  21    1234555666666666666666666666


Q ss_pred             HhcCCCcHHHHHHH
Q 002729           94 IELRPNFADAWSNL  107 (887)
Q Consensus        94 l~~~p~~~~~~~~l  107 (887)
                      .+.+.-..-.|..+
T Consensus       330 ~desdWS~a~Y~Yf  343 (546)
T KOG3783|consen  330 RDESDWSHAFYTYF  343 (546)
T ss_pred             HhhhhhhHHHHHHH
Confidence            55544333333333

>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]

Probab=95.64  E-value=0.12  Score=58.98  Aligned_cols=103  Identities=13%  Similarity=0.301  Sum_probs=73.0

Q ss_pred             CcEEEEecCCCC---CCCHHHHHHHHHHHhhcCCce-EEEecCChhhHHHHHHHHHHcCC---CCCcEEEcCCCCcHHHH
Q 002729          712 DKFIFACFNQLY---KMDPEIFNTWCNILRRVPNSA-LWLLRFPAAGEMRLRAYAVAQGV---QPDQIIFTDVAMKQEHI  784 (887)
Q Consensus       712 ~~~~~~~~~~~~---k~~~~~~~~~~~il~~~p~~~-l~~~~~~~~~~~~l~~~~~~~g~---~~~r~~~~~~~~~~~~~  784 (887)
                      ..++|.||+...   .+..+.....+..+...|+.. +|.........       -..|+   ....|++.++.|..+.+
T Consensus       277 ~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~~~~~FiW~~~~~~~~~-------~~~~~~~~~~~nV~~~~W~PQ~~ll  349 (496)
T KOG1192|consen  277 HSVVYISFGSMVNSADLPEEQKKELAKALESLQGVTFLWKYRPDDSIY-------FPEGLPNRGRGNVVLSKWAPQNDLL  349 (496)
T ss_pred             CCeEEEECCcccccccCCHHHHHHHHHHHHhCCCceEEEEecCCcchh-------hhhcCCCCCcCceEEecCCCcHHHh
Confidence            368888999887   799999999999998886664 67665433211       12233   23458999999998877


Q ss_pred             HhccCCcEEecCCCCCCchhHHHHHHhCCceeeec--ccchh
Q 002729          785 RRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLP--LEKMA  824 (887)
Q Consensus       785 ~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~--g~~~~  824 (887)
                      .....+..|+   ..+|=++++|+++.|||+|++|  |+.+.
T Consensus       350 l~H~~v~~Fv---THgG~nSt~E~~~~GvP~v~~Plf~DQ~~  388 (496)
T KOG1192|consen  350 LDHPAVGGFV---THGGWNSTLESIYSGVPMVCVPLFGDQPL  388 (496)
T ss_pred             cCCCcCcEEE---ECCcccHHHHHHhcCCceecCCccccchh
Confidence            3344466665   4677677799999999998654  55543

>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional

Probab=95.63  E-value=0.076  Score=57.29  Aligned_cols=111  Identities=7%  Similarity=-0.100  Sum_probs=67.0

Q ss_pred             CcEEEEecCC--CCCC-CHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCC-CCc-EEEcCCCCcHHHHHh
Q 002729          712 DKFIFACFNQ--LYKM-DPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQ-PDQ-IIFTDVAMKQEHIRR  786 (887)
Q Consensus       712 ~~~~~~~~~~--~~k~-~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~-~~r-~~~~~~~~~~~~~~~  786 (887)
                      ..+++....+  ..|. .++-+...++-+.. .+..+++.|.+.+ ++...+.....+-. ..+ +.+.|.++-.+..+.
T Consensus       181 ~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~-~~~~vvl~Gg~~e-~~~~~~i~~~~~~~~~~~~~~l~g~~sL~el~al  258 (348)
T PRK10916        181 PIIGFCPGAEFGPAKRWPHYHYAELAQQLID-EGYQVVLFGSAKD-HEAGNEILAALNTEQQAWCRNLAGETQLEQAVIL  258 (348)
T ss_pred             CEEEEeCCCCCccccCCCHHHHHHHHHHHHH-CCCeEEEEeCHHh-HHHHHHHHHhcccccccceeeccCCCCHHHHHHH
Confidence            4455655443  3454 45544444443432 3566777775433 44333333333211 123 567888888999999


Q ss_pred             ccCCcEEecCCCCCCchhHHHHHHhCCceeeecccchhhhhH
Q 002729          787 SSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVA  828 (887)
Q Consensus       787 ~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~~~r~~  828 (887)
                      +..||+++    -|-+-.+==|-++|+|||++-|++.+.+.+
T Consensus       259 i~~a~l~I----~nDTGp~HlAaA~g~P~valfGpt~p~~~~  296 (348)
T PRK10916        259 IAACKAIV----TNDSGLMHVAAALNRPLVALYGPSSPDFTP  296 (348)
T ss_pred             HHhCCEEE----ecCChHHHHHHHhCCCEEEEECCCCccccC
Confidence            99999998    222223334788999999999988766554

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=95.60  E-value=0.48  Score=51.95  Aligned_cols=226  Identities=15%  Similarity=0.099  Sum_probs=122.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhh------------CC-CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----c
Q 002729            4 ALAHQMYKSGSYKQALEHSNSVYER------------NP-LRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR----F   66 (887)
Q Consensus         4 ~la~~~~~~g~~~~A~~~~~~~l~~------------~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~   66 (887)
                      .+|...+..=+++-|.+.|.++-..            .. ....--..++..+...|++.+|.++|.+.-..+..    .
T Consensus       590 ~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyT  669 (1081)
T KOG1538|consen  590 ELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKRSGHENRALEMYT  669 (1081)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHH
Confidence            4556666666666666666554211            11 11122345677778888888888888764221100    0


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCChHHHHHHHH----------HHHHhCCCC
Q 002729           67 AECYGNMANAWKEKGDIDLAIRYYLVAIEL--RPNFADAWSNLASAYMRKGRLNEAAQCCR----------QALALNPLL  134 (887)
Q Consensus        67 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~----------~~l~~~p~~  134 (887)
                      ..-.+..++-+...|.-++-....++-.+-  +-+.+   ..-+..+...|+.++|+.+.-          -.-+++...
T Consensus       670 DlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP---kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~e  746 (1081)
T KOG1538|consen  670 DLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEP---KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAE  746 (1081)
T ss_pred             HHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCc---HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhh
Confidence            111234455555555555444444332211  11112   123555666777777765431          122233444


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002729          135 VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYK  214 (887)
Q Consensus       135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~  214 (887)
                      .+.+..++..+.+...+.-|.++|.++-.        ...+.++....+++.+|..+.++.-+.-   +++++..++.+.
T Consensus       747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLA  815 (1081)
T KOG1538|consen  747 REPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLA  815 (1081)
T ss_pred             hhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhheeecccchHhHhhhhhCcccc---ccccchHHHHhh
Confidence            55566666666666666667666666432        1234556667777777777666543322   346677777777


Q ss_pred             HcCChHHHHHHHHHHHhhCCChhHHhhHHHHHHHcCChHHHHHHHHHHH
Q 002729          215 ALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAI  263 (887)
Q Consensus       215 ~~g~~~~A~~~~~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~~l  263 (887)
                      +..++++|.+.|.++                    |+-.+|...+++.-
T Consensus       816 E~DrFeEAqkAfhkA--------------------Gr~~EA~~vLeQLt  844 (1081)
T KOG1538|consen  816 ENDRFEEAQKAFHKA--------------------GRQREAVQVLEQLT  844 (1081)
T ss_pred             hhhhHHHHHHHHHHh--------------------cchHHHHHHHHHhh
Confidence            777777777766554                    55566666666553

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=95.57  E-value=0.021  Score=36.65  Aligned_cols=28  Identities=32%  Similarity=0.527  Sum_probs=11.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 002729           37 LLLGAIYYQLHDYDMCIARNEEALRLEP   64 (887)
Q Consensus        37 ~~la~~~~~~g~~~~A~~~~~~al~~~p   64 (887)
                      +.+|.++.+.|++++|++.|+++++..|
T Consensus         4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P   31 (33)
T PF13174_consen    4 YRLARCYYKLGDYDEAIEYFQRLIKRYP   31 (33)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence            3344444444444444444444443333

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=95.48  E-value=0.13  Score=42.28  Aligned_cols=64  Identities=22%  Similarity=0.257  Sum_probs=37.6

Q ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--hHHHHHHHHHhhhcCC
Q 002729          392 IQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF--PEATCNLLHTLQCVCS  455 (887)
Q Consensus       392 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~  455 (887)
                      +..+++.++.+|++..+.+.++..+...|++++|++.+-.+++.++++  ..+...++..+...|.
T Consensus         8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~   73 (90)
T PF14561_consen    8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP   73 (90)
T ss_dssp             HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence            445566666667777777777777777777777777777776666544  4445555555554444

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=95.36  E-value=3.2  Score=42.35  Aligned_cols=164  Identities=16%  Similarity=0.091  Sum_probs=104.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhc----C--CCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcc-----CCCchh--
Q 002729          274 NNLGNALKDVGRVDEAIQCYNQCLSL----Q--PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT-----TGLSAP--  340 (887)
Q Consensus       274 ~~la~~~~~~g~~~~A~~~~~~al~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~--  340 (887)
                      ..++.+|...++|.+|+......++.    +  +.-.+++..-...|....+..+|...+..+....     |....+  
T Consensus       132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l  211 (411)
T KOG1463|consen  132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL  211 (411)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Confidence            45677888888888888777666543    2  1123455556677778888888887777665432     221111  


Q ss_pred             HhhHHHHHHHcCCHHHHHHHHHHHHhcCC---CCHHH---HHHHHHHHHHcCCHHHHHHHH--HHHHhcCCCcHHHHHHH
Q 002729          341 FNNLAVIYKQQGNYADAISCYNEVLRIDP---LAADG---LVNRGNTYKEIGRVTDAIQDY--IRAITIRPTMAEAHANL  412 (887)
Q Consensus       341 ~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~---~~~l~~~~~~~g~~~~A~~~~--~~al~~~p~~~~~~~~l  412 (887)
                      -..-|..+....+|.-|..+|-++++-..   ++..+   +-.+-.|-...+..++-...+  +.+++....+.++....
T Consensus       212 DLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Amkav  291 (411)
T KOG1463|consen  212 DLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAV  291 (411)
T ss_pred             HHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHH
Confidence            11224555566889999999999887532   22333   333333444456666544443  45566667778899999


Q ss_pred             HHHHHhC--CCHHHHHHHHHHHHHcCC
Q 002729          413 ASAYKDS--GHVEAAIKSYKQALLLRP  437 (887)
Q Consensus       413 a~~~~~~--g~~~~A~~~~~~al~~~p  437 (887)
                      +.++.+.  .+++.|+..|+.=+..+|
T Consensus       292 AeA~~nRSLkdF~~AL~~yk~eL~~D~  318 (411)
T KOG1463|consen  292 AEAFGNRSLKDFEKALADYKKELAEDP  318 (411)
T ss_pred             HHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence            9988774  588888888888776654

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=95.33  E-value=0.058  Score=53.36  Aligned_cols=68  Identities=19%  Similarity=0.267  Sum_probs=56.6

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHHHHHH
Q 002729          380 NTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLL  447 (887)
Q Consensus       380 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  447 (887)
                      .-..+.|+.++|...|+.++.+.|++++++..+|......++.-+|-.+|-+++.++|.+.+++.+-.
T Consensus       124 ~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~  191 (472)
T KOG3824|consen  124 GRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA  191 (472)
T ss_pred             HHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence            33456788888888888888888888888888888888888888888899899888888888776643

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=95.25  E-value=0.72  Score=41.24  Aligned_cols=77  Identities=16%  Similarity=0.033  Sum_probs=43.6

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002729            6 AHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD   82 (887)
Q Consensus         6 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~   82 (887)
                      .......++.+++..++..+--..|+.++.-..-|..+...|+|.+|+.+++...+..+..+...-.++.|+..+||
T Consensus        17 ~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D   93 (153)
T TIGR02561        17 LMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD   93 (153)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence            33344455566666666655555566666666666666666666666666666555555555555555555555444

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=95.25  E-value=3.6  Score=40.88  Aligned_cols=197  Identities=13%  Similarity=0.058  Sum_probs=106.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCcHHH
Q 002729           37 LLLGAIYYQLHDYDMCIARNEEALRLEPR--------FAECYGNMANAWKEKGDIDLAIRYYLVAIEL-----RPNFADA  103 (887)
Q Consensus        37 ~~la~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~  103 (887)
                      ..+++-..+.+++++|+..|.+.+...-.        ...+...++..|...|++..-.+.....-+.     .|.....
T Consensus         7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki   86 (421)
T COG5159           7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI   86 (421)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence            55677788889999999999999876321        2456788999999999887644444332221     1222222


Q ss_pred             HHHHHHHHH-HcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhh------CCChHH
Q 002729          104 WSNLASAYM-RKGRLNEAAQCCRQALALNPLL------VDAHSNLGNLMKAQGLVQEAYSCYLEALRI------QPTFAI  170 (887)
Q Consensus       104 ~~~la~~~~-~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~  170 (887)
                      ...+..-+- ....++.-+..+...++.....      ...-..++.++++.|+|.+|+....-.+..      .++-..
T Consensus        87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~  166 (421)
T COG5159          87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT  166 (421)
T ss_pred             HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence            222222221 1233444444444444332111      112234566677777777777666544431      233344


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHH--HHHHHHHHHcCChHHHHHHHHHHHhhC
Q 002729          171 AWSNLAGLFMESGDLNRALQYYKEAVKL-----KPTFPDAY--LNLGNVYKALGMPQEAIMCYQRAVQTR  233 (887)
Q Consensus       171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~  233 (887)
                      .+..-..+|....+..++...+..+...     .|....+.  ..-|...+...+|..|..+|-++++-.
T Consensus       167 vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egf  236 (421)
T COG5159         167 VHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGF  236 (421)
T ss_pred             hhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhcc
Confidence            4555556666666666666655554332     12211111  222344455566777777777766643

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=95.20  E-value=0.057  Score=53.42  Aligned_cols=68  Identities=25%  Similarity=0.386  Sum_probs=53.7

Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 002729          347 IYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLAS  414 (887)
Q Consensus       347 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  414 (887)
                      -..+.|+.++|..+|+.++++.|.+++++..+|......++.-+|-.+|-+++.++|.+.+++.+.+.
T Consensus       125 ~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R  192 (472)
T KOG3824|consen  125 RSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR  192 (472)
T ss_pred             HHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence            34567888888888888888888888888888888888888888888888888888888777665544

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=95.12  E-value=1.1  Score=40.93  Aligned_cols=94  Identities=16%  Similarity=0.033  Sum_probs=65.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCH
Q 002729          343 NLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHV  422 (887)
Q Consensus       343 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  422 (887)
                      .+..+-...++.+++..++..+--+.|..+..-..-|+++...|++.+|+..++.+.+..|..+.+.-.++.|+..+|+.
T Consensus        15 e~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~   94 (160)
T PF09613_consen   15 EVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP   94 (160)
T ss_pred             HHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence            34444556667777777777777777887777777788888888888888888887777777777777777777777764


Q ss_pred             HHHHHHHHHHHHcCC
Q 002729          423 EAAIKSYKQALLLRP  437 (887)
Q Consensus       423 ~~A~~~~~~al~~~p  437 (887)
                      + =..+-.++++.++
T Consensus        95 ~-Wr~~A~evle~~~  108 (160)
T PF09613_consen   95 S-WRRYADEVLESGA  108 (160)
T ss_pred             H-HHHHHHHHHhcCC
Confidence            3 2223344555544

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=95.03  E-value=0.2  Score=42.22  Aligned_cols=103  Identities=10%  Similarity=0.022  Sum_probs=72.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002729           39 LGAIYYQLHDYDMCIARNEEALRLEPRFAE---CYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKG  115 (887)
Q Consensus        39 la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  115 (887)
                      ++..++..|++-+|+++.+..+...+++..   .+...|.++.+            .+.+.+..+...-+.         
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~------------lA~~ten~d~k~~yL---------   60 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYK------------LAKKTENPDVKFRYL---------   60 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHH------------HHHhccCchHHHHHH---------
Confidence            456778889999999999988888776653   33344444332            222222222322222         


Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002729          116 RLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI  164 (887)
Q Consensus       116 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  164 (887)
                        -.+++.|.++..+.|.....++.+|.-+.....|+++..-.++++..
T Consensus        61 --l~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   61 --LGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             --HHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence              24678889999999999999999999888888899999998888875

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=94.95  E-value=0.25  Score=40.69  Aligned_cols=66  Identities=14%  Similarity=0.201  Sum_probs=42.7

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHhCCCHH
Q 002729          358 ISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM--AEAHANLASAYKDSGHVE  423 (887)
Q Consensus       358 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~  423 (887)
                      +..+++.++.+|++..+.+.++..+...|++++|++.+..+++.+++.  ..+...+..++...|.-+
T Consensus         8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~   75 (90)
T PF14561_consen    8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD   75 (90)
T ss_dssp             HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence            455677777788888888888888888888888888888887776553  445555555555555433

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=94.86  E-value=0.12  Score=37.34  Aligned_cols=33  Identities=24%  Similarity=0.367  Sum_probs=14.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q 002729           36 LLLLGAIYYQLHDYDMCIARNEEALRLEPRFAE   68 (887)
Q Consensus        36 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~   68 (887)
                      ++.+|..+++.|+|++|.++.+.+++..|++..
T Consensus         4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q   36 (53)
T PF14853_consen    4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ   36 (53)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence            344444444444444444444444444444433

>PRK10941 hypothetical protein; Provisional

Probab=94.86  E-value=0.25  Score=50.12  Aligned_cols=67  Identities=16%  Similarity=0.218  Sum_probs=43.8

Q ss_pred             hhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 002729          342 NNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEA  408 (887)
Q Consensus       342 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  408 (887)
                      .++-.+|.+.++++.|+.+.+.++.+.|+++.-+..+|.+|.++|.+..|...++..++..|+++.+
T Consensus       185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a  251 (269)
T PRK10941        185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS  251 (269)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence            3445556666666666666666666666666666666666666666666666666666666665544

>PRK10941 hypothetical protein; Provisional

Probab=94.81  E-value=0.18  Score=51.11  Aligned_cols=70  Identities=11%  Similarity=0.023  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHH
Q 002729          374 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEAT  443 (887)
Q Consensus       374 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  443 (887)
                      .+.++-.++.+.++++.|+.+.+..+.+.|+++.-+...|.+|.++|.+..|...++..++..|+++.+-
T Consensus       183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~  252 (269)
T PRK10941        183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE  252 (269)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence            5567778899999999999999999999999999999999999999999999999999999999998764

>PF13041 PPR_2: PPR repeat family

Probab=94.76  E-value=0.018  Score=41.47  Aligned_cols=46  Identities=11%  Similarity=0.197  Sum_probs=32.6

Q ss_pred             hHHHHHHHHHhhhcCChhhHhHHHHHHHHHHHHHhccCCCCCCCCcccccCcC
Q 002729          440 PEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPI  492 (887)
Q Consensus       440 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~  492 (887)
                      ...++.++..+...|++++|.++|+++       .+.|+.||..+|..++.++
T Consensus         3 ~~~yn~li~~~~~~~~~~~a~~l~~~M-------~~~g~~P~~~Ty~~li~~~   48 (50)
T PF13041_consen    3 VVTYNTLISGYCKAGKFEEALKLFKEM-------KKRGIKPDSYTYNILINGL   48 (50)
T ss_pred             hHHHHHHHHHHHHCcCHHHHHHHHHHH-------HHcCCCCCHHHHHHHHHHH
Confidence            456777788888877766666555544       4478999999888776554

>TIGR02094 more_P_ylases alpha-glucan phosphorylases

Probab=94.67  E-value=0.42  Score=54.77  Aligned_cols=115  Identities=14%  Similarity=0.109  Sum_probs=77.6

Q ss_pred             CCCcEEEEecCCC--CCCCHHHHHHHHHHHh--hc--CCceEEEecCChhh-------HHHHHHHHHHcCCCCCcEEEcC
Q 002729          710 PEDKFIFACFNQL--YKMDPEIFNTWCNILR--RV--PNSALWLLRFPAAG-------EMRLRAYAVAQGVQPDQIIFTD  776 (887)
Q Consensus       710 ~~~~~~~~~~~~~--~k~~~~~~~~~~~il~--~~--p~~~l~~~~~~~~~-------~~~l~~~~~~~g~~~~r~~~~~  776 (887)
                      .++.+++|...|+  +|-.+-++....++++  ..  .+..+++.|.+...       ...+...++.-.+ ++||+|..
T Consensus       386 dpd~~~ig~v~Rl~~yKr~dLil~~i~~l~~i~~~~~~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~-~~kv~f~~  464 (601)
T TIGR02094       386 DPDVLTIGFARRFATYKRADLIFRDLERLARILNNPERPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEF-RGRIVFLE  464 (601)
T ss_pred             CCCCcEEEEEEcchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCcccchHHHHHHHHHHHHhcccC-CCCEEEEc
Confidence            3566788888887  5888888888777764  32  24678887754321       2334444443334 67999987


Q ss_pred             CCCcHHHHHhccCCcEEec-CCC-CCC-chhHHHHHHhCCceeeecccchhh
Q 002729          777 VAMKQEHIRRSSLADLFLD-TPL-CNA-HTTGTDILWAGLPMITLPLEKMAT  825 (887)
Q Consensus       777 ~~~~~~~~~~~~~~d~~ld-~~~-~~g-~~t~~eal~~gvPvvt~~g~~~~~  825 (887)
                      --.-.---..++.+||+|- |+. ++. ||+-+=||.-|++.+|.....+.+
T Consensus       465 ~Yd~~lA~~i~aG~Dv~L~~Psr~~EacGtsqMka~~nGgL~~sv~DG~~~E  516 (601)
T TIGR02094       465 NYDINLARYLVSGVDVWLNNPRRPLEASGTSGMKAAMNGVLNLSILDGWWGE  516 (601)
T ss_pred             CCCHHHHHHHhhhheeEEeCCCCCcCCchHHHHHHHHcCCceeecccCcccc
Confidence            4432222235899999999 753 776 999999999999999887644443

This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=94.64  E-value=0.061  Score=35.43  Aligned_cols=25  Identities=36%  Similarity=0.570  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Q 002729          375 LVNRGNTYKEIGRVTDAIQDYIRAI  399 (887)
Q Consensus       375 ~~~l~~~~~~~g~~~~A~~~~~~al  399 (887)
                      +..+|.+|.+.|++++|+++|++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4455555555555555555555533

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=94.64  E-value=0.12  Score=37.28  Aligned_cols=41  Identities=27%  Similarity=0.278  Sum_probs=34.0

Q ss_pred             hhHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHH
Q 002729            2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAI   42 (887)
Q Consensus         2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~   42 (887)
                      ++.+|..+++.|+|++|.+..+.+++.+|++.++......+
T Consensus         4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i   44 (53)
T PF14853_consen    4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI   44 (53)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence            47789999999999999999999999999998877665543

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=94.62  E-value=6.1  Score=40.45  Aligned_cols=162  Identities=14%  Similarity=0.058  Sum_probs=76.5

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhh----C--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCCHH--H
Q 002729          139 SNLGNLMKAQGLVQEAYSCYLEALRI----Q--PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK-----PTFPD--A  205 (887)
Q Consensus       139 ~~la~~~~~~g~~~~A~~~~~~al~~----~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----~~~~~--~  205 (887)
                      ..++.+|...++|.+|+......++.    +  +.-.+++..-...|....+..+|...+..+....     |....  .
T Consensus       132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l  211 (411)
T KOG1463|consen  132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL  211 (411)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Confidence            34556666677777776665544432    1  1122334444555666666666666665554321     11111  1


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhhCCC-------hhHHhhHHHHHHHcCChHHHHHHHH--HHHhcCCCcHHHHHHH
Q 002729          206 YLNLGNVYKALGMPQEAIMCYQRAVQTRPN-------AIAFGNLASTYYERGQADMAILYYK--QAIGCDPRFLEAYNNL  276 (887)
Q Consensus       206 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-------~~~~~~la~~~~~~g~~~~A~~~~~--~~l~~~p~~~~~~~~l  276 (887)
                      -..-|..+....+|..|..+|-++++-...       ..++..+..+-...+..++...++.  .+++......++....
T Consensus       212 DLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Amkav  291 (411)
T KOG1463|consen  212 DLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAV  291 (411)
T ss_pred             HHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHH
Confidence            122244445556667777777666664322       1122222233333444444333332  2333344445555555


Q ss_pred             HHHHHHc--CCHHHHHHHHHHHHhcC
Q 002729          277 GNALKDV--GRVDEAIQCYNQCLSLQ  300 (887)
Q Consensus       277 a~~~~~~--g~~~~A~~~~~~al~~~  300 (887)
                      +.++.+.  .+|+.|+..|+.-+..+
T Consensus       292 AeA~~nRSLkdF~~AL~~yk~eL~~D  317 (411)
T KOG1463|consen  292 AEAFGNRSLKDFEKALADYKKELAED  317 (411)
T ss_pred             HHHhcCCcHHHHHHHHHHhHHHHhcC
Confidence            5555432  45555655555544433

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.44  E-value=12  Score=43.15  Aligned_cols=245  Identities=11%  Similarity=0.080  Sum_probs=135.1

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCC-chhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCH
Q 002729            6 AHQMYKSGSYKQALEHSNSVYERNPL-RTDNLLLLGAIYYQLHDYDMCIARNEEALRLE-PRFAECYGNMANAWKEKGDI   83 (887)
Q Consensus         6 a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~   83 (887)
                      ...+++..-|+-|+.+.++- ..+++ -.......|.-++++|++++|...|-+.+..- |...-      .-+......
T Consensus       341 L~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi------~kfLdaq~I  413 (933)
T KOG2114|consen  341 LDILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVI------KKFLDAQRI  413 (933)
T ss_pred             HHHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHH------HHhcCHHHH
Confidence            45677888888898887653 22222 24566778899999999999999999988643 32211      112223333


Q ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002729           84 DLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALR  163 (887)
Q Consensus        84 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  163 (887)
                      .+-..+++...+..-.+.+--..|..+|.+.++.++-.++.++.- .+.-.. -.-..-.++.+.+-.++|..+..+.-.
T Consensus       414 knLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~f-d~e~al~Ilr~snyl~~a~~LA~k~~~  491 (933)
T KOG2114|consen  414 KNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFF-DVETALEILRKSNYLDEAELLATKFKK  491 (933)
T ss_pred             HHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceee-eHHHHHHHHHHhChHHHHHHHHHHhcc
Confidence            344455555555554455556678889999999887766655432 110000 011222445555556666554444321


Q ss_pred             hCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---hh--
Q 002729          164 IQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF-PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN---AI--  237 (887)
Q Consensus       164 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~--  237 (887)
                          +..   .+-.++...++|++|++++..+   .+.. .......|..+.. ..+++-...+-+.......   ..  
T Consensus       492 ----he~---vl~ille~~~ny~eAl~yi~sl---p~~e~l~~l~kyGk~Ll~-h~P~~t~~ili~~~t~~~~~~~~~~~  560 (933)
T KOG2114|consen  492 ----HEW---VLDILLEDLHNYEEALRYISSL---PISELLRTLNKYGKILLE-HDPEETMKILIELITELNSQGKGKSL  560 (933)
T ss_pred             ----CHH---HHHHHHHHhcCHHHHHHHHhcC---CHHHHHHHHHHHHHHHHh-hChHHHHHHHHHHHhhcCCCCCCchh
Confidence                222   2334456678899999988764   2221 2244455555554 3445555555444442211   11  


Q ss_pred             --HHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcH
Q 002729          238 --AFGNLASTYYERGQADMAILYYKQAIGCDPRFL  270 (887)
Q Consensus       238 --~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~  270 (887)
                        .-..+-.+..-.+++..-..+++.+.+..|+..
T Consensus       561 s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~s~~s~  595 (933)
T KOG2114|consen  561 SNIPDSIEFIGIFSQNYQILLNFLESMSEISPDSE  595 (933)
T ss_pred             hcCccchhheeeeccCHHHHHHHHHHHHhcCCCch
Confidence              111222333445666666666666666666554

>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long)

Probab=94.18  E-value=1  Score=46.53  Aligned_cols=122  Identities=8%  Similarity=-0.097  Sum_probs=80.3

Q ss_pred             cEEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEe-cCChh---hHHHHHHHHHHcCCCCCcEE-EcCCCCcHHHHHhc
Q 002729          713 KFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLL-RFPAA---GEMRLRAYAVAQGVQPDQII-FTDVAMKQEHIRRS  787 (887)
Q Consensus       713 ~~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~-~~~~~---~~~~l~~~~~~~g~~~~r~~-~~~~~~~~~~~~~~  787 (887)
                      .+..|.-+.+.-.|-+.++...+-  -..+.++++. |.|..   -.+.+.+...+.-- .+++. +...+|.+||++.+
T Consensus       187 tILvGNSgd~sNnHieaL~~L~~~--~~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~-~~~~~iL~e~mpf~eYl~lL  263 (360)
T PF07429_consen  187 TILVGNSGDPSNNHIEALEALKQQ--FGDDVKIIVPLSYGANNQAYIQQVIQAGKELFG-AENFQILTEFMPFDEYLALL  263 (360)
T ss_pred             EEEEcCCCCCCccHHHHHHHHHHh--cCCCeEEEEECCCCCchHHHHHHHHHHHHHhcC-ccceeEhhhhCCHHHHHHHH
Confidence            355666666666777777655432  2345666553 44432   23455666655533 46665 46789999999999


Q ss_pred             cCCcEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCcccc
Q 002729          788 SLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV  843 (887)
Q Consensus       788 ~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~  843 (887)
                      ..||++.-.+-=-. --|++=.|++|+||+-....++-.     .|...|+|= +..
T Consensus       264 ~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~~~np~~~-----~l~~~~ipV-lf~  314 (360)
T PF07429_consen  264 SRCDLGIFNHNRQQGIGNICLLLQLGKKVFLSRDNPFWQ-----DLKEQGIPV-LFY  314 (360)
T ss_pred             HhCCEEEEeechhhhHhHHHHHHHcCCeEEEecCChHHH-----HHHhCCCeE-Eec
Confidence            99999997754444 446788999999999766655543     577778876 444

This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall

>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences

Probab=93.98  E-value=0.5  Score=55.46  Aligned_cols=115  Identities=14%  Similarity=0.111  Sum_probs=76.0

Q ss_pred             CCCcEEEEecCCC--CCCCHHHHHHHHHHHh---h--cCCceEEEecCCh-hhH--H----HHHHHHHHcCCCCCcEEEc
Q 002729          710 PEDKFIFACFNQL--YKMDPEIFNTWCNILR---R--VPNSALWLLRFPA-AGE--M----RLRAYAVAQGVQPDQIIFT  775 (887)
Q Consensus       710 ~~~~~~~~~~~~~--~k~~~~~~~~~~~il~---~--~p~~~l~~~~~~~-~~~--~----~l~~~~~~~g~~~~r~~~~  775 (887)
                      .++.+++|...|+  +|-.+-++....++.+   .  .| ..+++.|.+. ...  .    .+.+....-.+ ++||+|.
T Consensus       475 dpd~ltigfarRfa~YKR~~Lil~dl~rl~~il~~~~~p-vQ~IfaGKAhP~d~~gK~iIk~i~~~a~~p~~-~~kVvfl  552 (778)
T cd04299         475 DPNVLTIGFARRFATYKRATLLLRDPERLKRLLNDPERP-VQFIFAGKAHPADEPGKELIQEIVEFSRRPEF-RGRIVFL  552 (778)
T ss_pred             CCCccEEeeeecchhhhhHHHHHHHHHHHHHHhhCCCCC-eEEEEEEecCccchHHHHHHHHHHHHHhCcCC-CCcEEEE
Confidence            3566777777776  5877777777666644   1  34 6777777432 111  2    33333333344 5799998


Q ss_pred             CCCCcHHHHHhccCCcEEecCCC--CCC-chhHHHHHHhCCceeeecccchhhh
Q 002729          776 DVAMKQEHIRRSSLADLFLDTPL--CNA-HTTGTDILWAGLPMITLPLEKMATR  826 (887)
Q Consensus       776 ~~~~~~~~~~~~~~~d~~ld~~~--~~g-~~t~~eal~~gvPvvt~~g~~~~~r  826 (887)
                      .--+-.-=-.+++.|||.|.|+-  ++. ||+-+=||.-|++.++.-...+.+-
T Consensus       553 e~Yd~~lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvlDGww~E~  606 (778)
T cd04299         553 EDYDMALARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVLDGWWDEG  606 (778)
T ss_pred             cCCCHHHHHHHHhhhhhcccCCCCCCCCCccchHHHHHcCCeeeecccCccccc
Confidence            75433211224799999999944  776 9999999999999998877666653

Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=93.92  E-value=0.092  Score=49.96  Aligned_cols=60  Identities=25%  Similarity=0.361  Sum_probs=43.5

Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCh
Q 002729          381 TYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFP  440 (887)
Q Consensus       381 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  440 (887)
                      ...+.++.+.|.+.|.+++++.|+....|+.+|....+.|+++.|.+.|++.++++|.+.
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            344566777777777777777777777777777777777777777777777777777654

>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=93.90  E-value=0.098  Score=49.48  Aligned_cols=94  Identities=19%  Similarity=0.168  Sum_probs=59.4

Q ss_pred             CcEEEcCCCCcHHHHHhccCCcEEecCCCCCCchhHHHHHHhCCceeeecccch---hhhhHHHHHHhcCCCCcccc---
Q 002729          770 DQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKM---ATRVAGSLCLATGLGEEMIV---  843 (887)
Q Consensus       770 ~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~---~~r~~~~~l~~~g~~~~~~~---  843 (887)
                      .+|.+.+..+.  ...++..+|+++   ..+|+.|+.|++++|+|.|.++-...   ....-+..+...|..- .+.   
T Consensus        55 ~~v~~~~~~~~--m~~~m~~aDlvI---s~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~-~~~~~~  128 (167)
T PF04101_consen   55 PNVKVFGFVDN--MAELMAAADLVI---SHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAI-MLDESE  128 (167)
T ss_dssp             CCCEEECSSSS--HHHHHHHHSEEE---ECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCC-CSECCC
T ss_pred             CcEEEEechhh--HHHHHHHcCEEE---eCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCcc-ccCccc
Confidence            67888888763  455567899997   35667899999999999988876662   2222334566667765 443   


Q ss_pred             CCHHHHHHHHHHHhcCHHHHHHHHHH
Q 002729          844 NSMKEYEERAVSLALDRQKLQALTNK  869 (887)
Q Consensus       844 ~~~~~y~~~a~~l~~d~~~~~~~~~~  869 (887)
                      .+.+...+....+..++..+..+...
T Consensus       129 ~~~~~L~~~i~~l~~~~~~~~~~~~~  154 (167)
T PF04101_consen  129 LNPEELAEAIEELLSDPEKLKEMAKA  154 (167)
T ss_dssp             -SCCCHHHHHHCHCCCHH-SHHHCCC
T ss_pred             CCHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            23566777777888888876655443

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=93.89  E-value=2.5  Score=46.52  Aligned_cols=131  Identities=21%  Similarity=0.190  Sum_probs=87.2

Q ss_pred             HHHHHHHHHhcCCCChHHHHh--HHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHH-HH
Q 002729          289 AIQCYNQCLSLQPSHPQALTN--LGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNE-VL  365 (887)
Q Consensus       289 A~~~~~~al~~~p~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al  365 (887)
                      ++..+...+..++.+++.+..  +...+...+....+...+...+..+|++.....+++......|....+...+.+ +.
T Consensus        50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~  129 (620)
T COG3914          50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE  129 (620)
T ss_pred             HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            444444445556666655333  355555666666777777777777777777777777777666666665555554 66


Q ss_pred             hcCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhC
Q 002729          366 RIDPLAADGLVNR------GNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDS  419 (887)
Q Consensus       366 ~~~p~~~~~~~~l------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  419 (887)
                      ...|.+......+      +.....+|+..++....+++....|.++.+...+.....+.
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~  189 (620)
T COG3914         130 WLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQ  189 (620)
T ss_pred             hcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHh
Confidence            6677776655544      77777778888888888888888888777666666554433

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=93.79  E-value=2  Score=36.59  Aligned_cols=90  Identities=21%  Similarity=0.239  Sum_probs=48.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhC---CC---------chhHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CC
Q 002729            4 ALAHQMYKSGSYKQALEHSNSVYERN---PL---------RTDNLLLLGAIYYQLHDYDMCIARNEEALRL-------EP   64 (887)
Q Consensus         4 ~la~~~~~~g~~~~A~~~~~~~l~~~---p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p   64 (887)
                      ..|...++.|-|++|...+.++.+..   |.         +..++-.|+..+..+|+|++++...++++..       +.
T Consensus        14 s~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~q   93 (144)
T PF12968_consen   14 SDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQ   93 (144)
T ss_dssp             HHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTS
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccc
Confidence            34566677778888888887776532   21         2345566667777777777766666555432       22


Q ss_pred             Cc----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002729           65 RF----AECYGNMANAWKEKGDIDLAIRYYLVA   93 (887)
Q Consensus        65 ~~----~~~~~~la~~~~~~g~~~~A~~~~~~a   93 (887)
                      +.    ..+-+..+..+...|+.++|++.|+.+
T Consensus        94 deGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a  126 (144)
T PF12968_consen   94 DEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA  126 (144)
T ss_dssp             THHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence            21    122334444445555555555555444

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=93.77  E-value=2.9  Score=37.50  Aligned_cols=72  Identities=14%  Similarity=0.057  Sum_probs=42.0

Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCH
Q 002729          351 QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHV  422 (887)
Q Consensus       351 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  422 (887)
                      .++.+++..++..+--+.|+.+..-..-|+++...|++.+|+..++...+..+..+...-.++.|+..+|+.
T Consensus        23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp   94 (153)
T TIGR02561        23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA   94 (153)
T ss_pred             cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence            555555555555555555666655555566666666666666666665555555555555555555555553

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT

Probab=93.64  E-value=0.18  Score=52.12  Aligned_cols=93  Identities=17%  Similarity=0.191  Sum_probs=59.0

Q ss_pred             CCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCCchh
Q 002729          725 MDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTT  804 (887)
Q Consensus       725 ~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g~~t  804 (887)
                      ......++...+++..|+..|++.-.|......-...+....-...++++....+..+   ++..+|.++    --.+|+
T Consensus       138 ~~~~~~~~l~~~~~~~p~~~lvvK~HP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---Ll~~s~~Vv----tinStv  210 (269)
T PF05159_consen  138 SQADFLDMLESFAKENPDAKLVVKPHPDERGGNKYSYLEELPNLPNVVIIDDDVNLYE---LLEQSDAVV----TINSTV  210 (269)
T ss_pred             cHhHHHHHHHHHHHHCCCCEEEEEECchhhCCCChhHhhhhhcCCCeEEECCCCCHHH---HHHhCCEEE----EECCHH
Confidence            4456777777888889999998876553211111122333311244555555554444   457789887    556889


Q ss_pred             HHHHHHhCCceeeecccchh
Q 002729          805 GTDILWAGLPMITLPLEKMA  824 (887)
Q Consensus       805 ~~eal~~gvPvvt~~g~~~~  824 (887)
                      .+|||.+|.||||+.-..+.
T Consensus       211 GlEAll~gkpVi~~G~~~Y~  230 (269)
T PF05159_consen  211 GLEALLHGKPVIVFGRAFYA  230 (269)
T ss_pred             HHHHHHcCCceEEecCcccC
Confidence            99999999999996554444

Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport

>smart00028 TPR Tetratricopeptide repeats

Probab=93.63  E-value=0.1  Score=32.74  Aligned_cols=31  Identities=39%  Similarity=0.589  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 002729          408 AHANLASAYKDSGHVEAAIKSYKQALLLRPD  438 (887)
Q Consensus       408 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  438 (887)
                      ++..+|.++...|++++|...|+++++..|+
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            4455555666666666666666665555543

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.62  E-value=3.6  Score=45.36  Aligned_cols=130  Identities=21%  Similarity=0.177  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 002729           70 YGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQG  149 (887)
Q Consensus        70 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g  149 (887)
                      ...++..+.++|..+.|++..+        +++..+   .+..+.|+++.|.+..++     .++...|..+|.....+|
T Consensus       298 ~~~i~~fL~~~G~~e~AL~~~~--------D~~~rF---eLAl~lg~L~~A~~~a~~-----~~~~~~W~~Lg~~AL~~g  361 (443)
T PF04053_consen  298 GQSIARFLEKKGYPELALQFVT--------DPDHRF---ELALQLGNLDIALEIAKE-----LDDPEKWKQLGDEALRQG  361 (443)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHSS---------HHHHH---HHHHHCT-HHHHHHHCCC-----CSTHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHhhcC--------ChHHHh---HHHHhcCCHHHHHHHHHh-----cCcHHHHHHHHHHHHHcC
Confidence            4445555555665555555431        122222   233456666666554322     234556666666666666


Q ss_pred             ChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 002729          150 LVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQR  228 (887)
Q Consensus       150 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  228 (887)
                      +++-|.++|+++-.        +..+..+|.-.|+.+.-.++.+.+......     +..-.++...|+.++.++++.+
T Consensus       362 ~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~-----n~af~~~~~lgd~~~cv~lL~~  427 (443)
T PF04053_consen  362 NIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEERGDI-----NIAFQAALLLGDVEECVDLLIE  427 (443)
T ss_dssp             BHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-H-----HHHHHHHHHHT-HHHHHHHHHH
T ss_pred             CHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHccCH-----HHHHHHHHHcCCHHHHHHHHHH
Confidence            66666666655422        334455555566655544444444332211     1122333344555555555444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=93.61  E-value=2  Score=36.54  Aligned_cols=86  Identities=21%  Similarity=0.244  Sum_probs=49.1

Q ss_pred             HHcCCHHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCcH---
Q 002729          349 KQQGNYADAISCYNEVLRIDPL------------AADGLVNRGNTYKEIGRVTDAIQDYIRAITI-------RPTMA---  406 (887)
Q Consensus       349 ~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------~p~~~---  406 (887)
                      .+.|-|++|...++++.+....            +.-.+..++..+..+|+|++++..-.+++..       +.+..   
T Consensus        20 l~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklW   99 (144)
T PF12968_consen   20 LQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLW   99 (144)
T ss_dssp             HHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhH
Confidence            3456677777777776664321            1225566777777778877777666666532       33322   


Q ss_pred             -HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 002729          407 -EAHANLASAYKDSGHVEAAIKSYKQALL  434 (887)
Q Consensus       407 -~~~~~la~~~~~~g~~~~A~~~~~~al~  434 (887)
                       .+-++.+.++...|+.++|+..|+.+-+
T Consensus       100 IaaVfsra~Al~~~Gr~~eA~~~fr~agE  128 (144)
T PF12968_consen  100 IAAVFSRAVALEGLGRKEEALKEFRMAGE  128 (144)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence             2335556666667777777777666544

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=93.59  E-value=13  Score=40.39  Aligned_cols=93  Identities=12%  Similarity=0.122  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 002729          204 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDV  283 (887)
Q Consensus       204 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~  283 (887)
                      ..+..+..++....++.-...++.+++....+-.++..++.+|.+. ..++-...+++..+.+-++...-..++..|.+ 
T Consensus        67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-  144 (711)
T COG1747          67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-  144 (711)
T ss_pred             hHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-
Confidence            3444444555544455555555566666555555666666666555 44455555555555555555444455554444 


Q ss_pred             CCHHHHHHHHHHHHh
Q 002729          284 GRVDEAIQCYNQCLS  298 (887)
Q Consensus       284 g~~~~A~~~~~~al~  298 (887)
                      ++.+++..+|.+++.
T Consensus       145 ik~sk~a~~f~Ka~y  159 (711)
T COG1747         145 IKKSKAAEFFGKALY  159 (711)
T ss_pred             hchhhHHHHHHHHHH
Confidence            555566666666554

>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]

Probab=93.55  E-value=0.48  Score=50.60  Aligned_cols=105  Identities=17%  Similarity=0.052  Sum_probs=65.7

Q ss_pred             CcEEEEec-CC-CCCC-CHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhcc
Q 002729          712 DKFIFACF-NQ-LYKM-DPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSS  788 (887)
Q Consensus       712 ~~~~~~~~-~~-~~k~-~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~  788 (887)
                      ..++|+.. .+ ..|. ..+-++-.++.+.+.- -.+++.|++ ...+...+.....+..   +.+.|.++-.+..++..
T Consensus       176 ~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~-~~Vvl~g~~-~e~e~~~~i~~~~~~~---~~l~~k~sL~e~~~li~  250 (334)
T COG0859         176 PYIVINPGASRGSAKRWPLEHYAELAELLIAKG-YQVVLFGGP-DEEERAEEIAKGLPNA---VILAGKTSLEELAALIA  250 (334)
T ss_pred             CeEEEeccccccccCCCCHHHHHHHHHHHHHCC-CEEEEecCh-HHHHHHHHHHHhcCCc---cccCCCCCHHHHHHHHh
Confidence            45555554 33 4454 4444444444444443 567777765 4344444544444432   22899999999999999


Q ss_pred             CCcEEecCCCCCCchhHHHHHHhCCceeeecccchhh
Q 002729          789 LADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMAT  825 (887)
Q Consensus       789 ~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~~~  825 (887)
                      .||+++-    +-+-.+==|-+.|+|+|++-|++-..
T Consensus       251 ~a~l~I~----~DSg~~HlAaA~~~P~I~iyg~t~~~  283 (334)
T COG0859         251 GADLVIG----NDSGPMHLAAALGTPTIALYGPTSPA  283 (334)
T ss_pred             cCCEEEc----cCChHHHHHHHcCCCEEEEECCCCcc
Confidence            9999872    22223334778999999999988543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.49  E-value=2.4  Score=46.78  Aligned_cols=27  Identities=26%  Similarity=0.713  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002729          101 ADAWSNLASAYMRKGRLNEAAQCCRQA  127 (887)
Q Consensus       101 ~~~~~~la~~~~~~g~~~~A~~~~~~~  127 (887)
                      +..|..+|.....+|+++-|.++|+++
T Consensus       347 ~~~W~~Lg~~AL~~g~~~lAe~c~~k~  373 (443)
T PF04053_consen  347 PEKWKQLGDEALRQGNIELAEECYQKA  373 (443)
T ss_dssp             HHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence            444555555555555555555444443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PRK14089 ipid-A-disaccharide synthase; Provisional

Probab=93.47  E-value=0.43  Score=50.65  Aligned_cols=78  Identities=10%  Similarity=0.052  Sum_probs=50.0

Q ss_pred             CCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCCch
Q 002729          724 KMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHT  803 (887)
Q Consensus       724 k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g~~  803 (887)
                      ++.|.++++..++.+..  .++++.+...  .+.+++.....    ..+.|.+     +-...++.||++|    ..+||
T Consensus       183 ~llP~~~~aa~~L~~~~--~~~~i~~a~~--~~~i~~~~~~~----~~~~~~~-----~~~~~m~~aDlal----~~SGT  245 (347)
T PRK14089        183 RLMPIFKELAKKLEGKE--KILVVPSFFK--GKDLKEIYGDI----SEFEISY-----DTHKALLEAEFAF----ICSGT  245 (347)
T ss_pred             HHHHHHHHHHHHHhhcC--cEEEEeCCCc--HHHHHHHHhcC----CCcEEec-----cHHHHHHhhhHHH----hcCcH
Confidence            46787788887776543  4555544332  34455444321    1233443     1235678899998    77899


Q ss_pred             hHHHHHHhCCceeee
Q 002729          804 TGTDILWAGLPMITL  818 (887)
Q Consensus       804 t~~eal~~gvPvvt~  818 (887)
                      +|+|++.+|+|.|..
T Consensus       246 ~TLE~al~g~P~Vv~  260 (347)
T PRK14089        246 ATLEAALIGTPFVLA  260 (347)
T ss_pred             HHHHHHHhCCCEEEE
Confidence            999999999997763

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=93.27  E-value=9.7  Score=38.70  Aligned_cols=190  Identities=16%  Similarity=0.123  Sum_probs=94.6

Q ss_pred             HHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHH
Q 002729          244 STYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAA  323 (887)
Q Consensus       244 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  323 (887)
                      +...+..+..+-++.-..+++++|+...+|..++.--  ..-..+|.++++++++....    .+.........|...+|
T Consensus       192 Q~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~----~yr~sqq~qh~~~~~da  265 (556)
T KOG3807|consen  192 QKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGET----IYRQSQQCQHQSPQHEA  265 (556)
T ss_pred             HHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHH----HHhhHHHHhhhccchhh
Confidence            3344455556666666677777777776666655432  23456677777776654211    11111111111111111


Q ss_pred             HHHHHHHHhccCC-CchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002729          324 ASYYKATLAVTTG-LSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA--ADGLVNRGNTYKEIGRVTDAIQDYIRAIT  400 (887)
Q Consensus       324 ~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~  400 (887)
                      .      .+.+.+ ...+...++.+..++|+..+|.+.++...+..|-.  ..++-++...+.+..-|.+....+.+.-+
T Consensus       266 ~------~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDd  339 (556)
T KOG3807|consen  266 Q------LRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD  339 (556)
T ss_pred             h------hhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            1      111111 11223356777777777777777777776655522  23444555555555555444444444333


Q ss_pred             cC-CCcHHHHHHHHHH-------------HHhCCC---HHHHHHHHHHHHHcCCCChHHHHH
Q 002729          401 IR-PTMAEAHANLASA-------------YKDSGH---VEAAIKSYKQALLLRPDFPEATCN  445 (887)
Q Consensus       401 ~~-p~~~~~~~~la~~-------------~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~  445 (887)
                      +. |..+.+.+.-+.+             -.+.|-   -..|++...++.+.+|.-|.....
T Consensus       340 islPkSA~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYLLE  401 (556)
T KOG3807|consen  340 ISLPKSAAICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLLE  401 (556)
T ss_pred             ccCcchHHHHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHHHH
Confidence            32 3333322222111             122221   235788889999999987765543

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=93.25  E-value=0.83  Score=39.88  Aligned_cols=74  Identities=14%  Similarity=0.063  Sum_probs=59.2

Q ss_pred             CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHh-cCCC-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHH
Q 002729          370 LAADGLVNRGNTYKEIG---RVTDAIQDYIRAIT-IRPT-MAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEAT  443 (887)
Q Consensus       370 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~-~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  443 (887)
                      -.....+++++++.+..   +..+.+.+++..++ -.|. .-+..+.|+..+.+.|+|++++++.+..++..|++..+.
T Consensus        30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~  108 (149)
T KOG3364|consen   30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL  108 (149)
T ss_pred             chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence            34567888888888765   45678889999887 4443 356788899999999999999999999999999987653

>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB

Probab=93.21  E-value=12  Score=39.07  Aligned_cols=103  Identities=16%  Similarity=0.131  Sum_probs=60.5

Q ss_pred             CHHHHHHHHHHHhh---cCCceEEEecCC-hhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCC
Q 002729          726 DPEIFNTWCNILRR---VPNSALWLLRFP-AAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA  801 (887)
Q Consensus       726 ~~~~~~~~~~il~~---~p~~~l~~~~~~-~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g  801 (887)
                      ....++.+++.+..   ..+..++++... +.+. ...+.+...--++.+|+  ...+..+.+..+..+|+++-+-    
T Consensus       186 ~~~~~~~l~~~l~~l~~~~g~~v~~i~~~~~~D~-~~~~~l~~~~~~~~~i~--~~~~~~e~~~~i~~~~~vI~~R----  258 (298)
T TIGR03609       186 DVSRLLRLLRALDRLQRDTGAFVLFLPFQQPQDL-PLARALRDQLLGPAEVL--SPLDPEELLGLFASARLVIGMR----  258 (298)
T ss_pred             CHHHHHHHHHHHHHHHHhhCCeEEEEeCCcchhH-HHHHHHHHhcCCCcEEE--ecCCHHHHHHHHhhCCEEEEec----
Confidence            44444444444332   234545444432 2222 23333333322344553  5556789999999999988441    


Q ss_pred             chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCC
Q 002729          802 HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGE  839 (887)
Q Consensus       802 ~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~  839 (887)
                      =-.++=|+.+|||+|.+.   . +.=..+++..+|+|.
T Consensus       259 lH~~I~A~~~gvP~i~i~---y-~~K~~~~~~~~g~~~  292 (298)
T TIGR03609       259 LHALILAAAAGVPFVALS---Y-DPKVRAFAADAGVPG  292 (298)
T ss_pred             hHHHHHHHHcCCCEEEee---c-cHHHHHHHHHhCCCc
Confidence            125788999999999884   2 234456899999998

The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).

>PF13041 PPR_2: PPR repeat family

Probab=93.10  E-value=0.43  Score=34.18  Aligned_cols=43  Identities=26%  Similarity=0.230  Sum_probs=34.0

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHHHHHH
Q 002729          405 MAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLL  447 (887)
Q Consensus       405 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  447 (887)
                      +..+|..+...|.+.|++++|.++|+++.+.+-.+....++.+
T Consensus         2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~l   44 (50)
T PF13041_consen    2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNIL   44 (50)
T ss_pred             chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence            3567888999999999999999999999988766555555443

>smart00028 TPR Tetratricopeptide repeats

Probab=92.93  E-value=0.18  Score=31.58  Aligned_cols=30  Identities=33%  Similarity=0.675  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 002729          374 GLVNRGNTYKEIGRVTDAIQDYIRAITIRP  403 (887)
Q Consensus       374 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  403 (887)
                      ++..+|.++...|++++|+..++++++..|
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            344555555555555555555555555544

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.79  E-value=6.1  Score=43.44  Aligned_cols=100  Identities=21%  Similarity=0.244  Sum_probs=56.7

Q ss_pred             cCChHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-----------------
Q 002729          114 KGRLNEAAQCCRQALAL------------NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI-----------------  164 (887)
Q Consensus       114 ~g~~~~A~~~~~~~l~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----------------  164 (887)
                      ...|++|...|.-+...            .|-+.+.+..++.+...+|+.+.|....++++=.                 
T Consensus       251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR  330 (665)
T KOG2422|consen  251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR  330 (665)
T ss_pred             chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence            34577777777776554            3556677788888888888877777766665421                 


Q ss_pred             ----CCChHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHH
Q 002729          165 ----QPTFAI---AWSNLAGLFMESGDLNRALQYYKEAVKLKPT-FPDAYLNLGNVY  213 (887)
Q Consensus       165 ----~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~l~~~~  213 (887)
                          .|.|-.   +++.....+.+.|-+..|.++.+-++.++|. +|.....+...|
T Consensus       331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~  387 (665)
T KOG2422|consen  331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIY  387 (665)
T ss_pred             CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHH
Confidence                112211   1222233344455566666666655555555 454444444443

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=92.66  E-value=0.22  Score=49.63  Aligned_cols=76  Identities=12%  Similarity=0.167  Sum_probs=34.6

Q ss_pred             cCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 002729          334 TTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVN-RGNTYKEIGRVTDAIQDYIRAITIRPTMAEAH  409 (887)
Q Consensus       334 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  409 (887)
                      .++++..|...+....+.|-+.+--..|.++++.+|.+.+.|.. .+.-+...++++.+...|.+++.++|+++..|
T Consensus       103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw  179 (435)
T COG5191         103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIW  179 (435)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHH
Confidence            34444444444444444444444444555555555555544443 22333344444444444444444444444443

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=92.63  E-value=0.25  Score=49.28  Aligned_cols=89  Identities=7%  Similarity=-0.037  Sum_probs=77.6

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 002729          361 YNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHAN-LASAYKDSGHVEAAIKSYKQALLLRPDF  439 (887)
Q Consensus       361 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~  439 (887)
                      |.++-...|.++..|...+....+.|.+.+--..|.++++..|.+++.|.. -+.-+...++++.++..|.+.+.++|++
T Consensus        96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~  175 (435)
T COG5191          96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS  175 (435)
T ss_pred             eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence            344455578899999999999999999999999999999999999999876 5566778899999999999999999999


Q ss_pred             hHHHHHHHHH
Q 002729          440 PEATCNLLHT  449 (887)
Q Consensus       440 ~~~~~~l~~~  449 (887)
                      |..|......
T Consensus       176 p~iw~eyfr~  185 (435)
T COG5191         176 PRIWIEYFRM  185 (435)
T ss_pred             chHHHHHHHH
Confidence            9999876654

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=92.42  E-value=1.3  Score=43.33  Aligned_cols=87  Identities=16%  Similarity=0.185  Sum_probs=56.1

Q ss_pred             CCHHHHHHHHHHHHhc----C-C--CCHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHhcC--C----CcHHHHHH
Q 002729          352 GNYADAISCYNEVLRI----D-P--LAADGLVNRGNTYKEIGRVT-------DAIQDYIRAITIR--P----TMAEAHAN  411 (887)
Q Consensus       352 g~~~~A~~~~~~al~~----~-p--~~~~~~~~l~~~~~~~g~~~-------~A~~~~~~al~~~--p----~~~~~~~~  411 (887)
                      ..+++|++.|.-++-.    . +  .-+..+..+|++|...|+.+       .|.+.|+++++..  |    +...+.+.
T Consensus        91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL  170 (214)
T PF09986_consen   91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL  170 (214)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence            3455555555554432    1 1  11345666777777777744       4445555555443  2    23567888


Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 002729          412 LASAYKDSGHVEAAIKSYKQALLLRPD  438 (887)
Q Consensus       412 la~~~~~~g~~~~A~~~~~~al~~~p~  438 (887)
                      +|.+..+.|++++|.++|.+++...-.
T Consensus       171 igeL~rrlg~~~eA~~~fs~vi~~~~~  197 (214)
T PF09986_consen  171 IGELNRRLGNYDEAKRWFSRVIGSKKA  197 (214)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence            999999999999999999999886443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	887
3pe3_A	723	Structure Of Human O-Glcnac Transferase And Its Com		1e-98
3pe3_A	723	Structure Of Human O-Glcnac Transferase And Its Com		8e-52
1w3b_A	388	The Superhelical Tpr Domain Of O-Linked Glcnac Tran		1e-78
1w3b_A	388	The Superhelical Tpr Domain Of O-Linked Glcnac Tran		1e-61
2vsy_A	568	Xanthomonas Campestris Putative Ogt (Xcc0866), Apos		1e-60
2vsn_A	568	Structure And Topological Arrangement Of An O-Glcna		2e-60
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		6e-25
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		6e-21
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		4e-19
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		2e-14
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		1e-20
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		2e-19
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		8e-15
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		9e-15
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		1e-19
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		8e-18
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		1e-13
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		9e-16
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		5e-13
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		6e-12
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		4e-14
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		9e-12
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		2e-08
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		7e-08
3vtx_A	184	Crystal Structure Of Mama Protein Length = 184		9e-11
3vtx_A	184	Crystal Structure Of Mama Protein Length = 184		1e-07
3vtx_A	184	Crystal Structure Of Mama Protein Length = 184		2e-06
2avp_A	70	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		5e-10
2avp_A	70	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		7e-10
2avp_A	70	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		3e-06
2avp_A	70	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		8e-06
2q7f_A	243	Crystal Structure Of Yrrb: A Tpr Protein With An Un		7e-10
1fch_A	368	Crystal Structure Of The Pts1 Complexed To The Tpr		5e-09
1fch_A	368	Crystal Structure Of The Pts1 Complexed To The Tpr		1e-04
2c0m_A	319	Apo Form Of The Tpr Domain Of The Pex5p Receptor Le		6e-09
2c0m_A	319	Apo Form Of The Tpr Domain Of The Pex5p Receptor Le		9e-05
2c0l_A	305	Tpr Domain Of Human Pex5p In Complex With Human Msc		6e-09
2c0l_A	305	Tpr Domain Of Human Pex5p In Complex With Human Msc		1e-04
3r9a_B	328	Human Alanine-Glyoxylate Aminotransferase In Comple		6e-09
3r9a_B	328	Human Alanine-Glyoxylate Aminotransferase In Comple		1e-04
2j9q_A	328	A Novel Conformation For The Tpr Domain Of Pex5p Le		6e-09
2j9q_A	328	A Novel Conformation For The Tpr Domain Of Pex5p Le		1e-04
4a1s_A	411	Crystallographic Structure Of The Pins:insc Complex		2e-08
3sf4_A	406	Crystal Structure Of The Complex Between The Conser		5e-06
3ro2_A	338	Structures Of The LgnNUMA COMPLEX Length = 338		6e-06
4g2v_A	340	Structure Complex Of Lgn Binding With Frmpd1 Length		7e-06
2vyi_A	131	Crystal Structure Of The Tpr Domain Of Human Sgt Le		8e-06
3uq3_A	258	Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length =		3e-05
4eqf_A	365	Trip8b-1a#206-567 Interacting With The Carboxy-Term		4e-05
1elw_A	118	Crystal Structure Of The Tpr1 Domain Of Hop In Comp		2e-04
2ho1_A	252	Functional Characterization Of Pseudomonas Aerugino		2e-04
3ceq_A	283	The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc		3e-04
3nf1_A	311	Crystal Structure Of The Tpr Domain Of Kinesin Ligh		4e-04
2fi7_A	265	Crystal Structure Of Pilf : Functional Implication		4e-04
2lni_A	133	Solution Nmr Structure Of Stress-Induced-Phosphopro		6e-04
3asg_A	186	Mama D159k Mutant 2 Length = 186		6e-04
2pl2_A	217	Crystal Structure Of Ttc0263: A Thermophilic Tpr Pr		7e-04
3edt_B	283	Crystal Structure Of The Mutated S328n Hklc2 Tpr Do		8e-04

>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex With A Peptide Substrate Length = 723

Iteration: 1
 Score =  357 bits (917), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 176/389 (45%), Positives = 244/389 (62%), Gaps = 5/389 (1%)
Query: 301 PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISC 360
           P+H  +L NL NI  E   +  A   Y+  L V    +A  +NLA + +QQG   +A+  
Sbjct: 6   PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 65
Query: 361 YNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 420
           Y E +RI P  AD   N GNT KE+  V  A+Q Y RAI I P  A+AH+NLAS +KDSG
Sbjct: 66  YKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSG 125
Query: 421 HVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLP 480
           ++  AI SY+ AL L+PDFP+A CNL H LQ VC W D D    ++  I+  Q+  + LP
Sbjct: 126 NIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLP 185
Query: 481 SVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIXXXXXXXXXXXX 540
           SV P H++ YP+       I+ ++ + C    +    PP+ HP  + +            
Sbjct: 186 SVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKL----SDGRLRVG 241
Query: 541 YVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMS 600
           YVSSDFGNHP SHLM S+ GMHN +  EVFCYALSP+DGT +R +  +EA HF+D+S + 
Sbjct: 242 YVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIP 301
Query: 601 SD-MIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVT 659
            +   A  I++D I IL+N+NGYTKGARNE+FA++PAPIQ  ++G+PGT+GA ++DY++T
Sbjct: 302 CNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIIT 361
Query: 660 DEFVSPLRYAHIYSEKLVHVPHCYFVNDY 688
           D+  SP   A  YSEKL ++PH +F+ D+
Sbjct: 362 DQETSPAEVAEQYSEKLAYMPHTFFIGDH 390

>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex With A Peptide Substrate Length = 723

Iteration: 1
 Score =  202 bits (513), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 94/183 (51%), Positives = 125/183 (68%), Gaps = 1/183 (0%)
Query: 704 RSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAV 763
           RS YGLPED  ++  FNQLYK+DP     W NIL+RVPNS LWLLRFPA GE  ++ YA 
Sbjct: 514 RSQYGLPEDAIVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEPNIQQYAQ 573
Query: 764 AQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKM 823
             G+  ++IIF+ VA K+EH+RR  LAD+ LDTPLCN HTTG D+LWAG PM+T+P E +
Sbjct: 574 NMGLPQNRIIFSPVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGETL 633
Query: 824 ATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTA 883
           A+RVA S     G   E+I  + +EYE+ AV L  D + L+ +  K+   R++ PLF+T 
Sbjct: 634 ASRVAASQLTCLGC-LELIAKNRQEYEDIAVKLGTDLEYLKKVRGKVWKQRISSPLFNTK 692
Query: 884 RWV 886
           ++ 
Sbjct: 693 QYT 695

>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388

Iteration: 1
 Score =  291 bits (745), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 160/384 (41%), Positives = 225/384 (58%), Gaps = 1/384 (0%)
Query: 3   MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRL 62
           M LAH+ Y++G ++ A  H   ++ + P  T  LLLL +I++Q    D     +  A++ 
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62
Query: 63  EPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQ 122
            P  AE Y N+ N +KE+G +  AI +Y  A+ L+P+F D + NLA+A +  G +  A Q
Sbjct: 63  NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122
Query: 123 CCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMES 182
               AL  NP L    S+LGNL+KA G ++EA +CYL+A+  QP FA+AWSNL  +F   
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ 182
Query: 183 GDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGN 241
           G++  A+ ++++AV L P F DAY+NLGNV K   +   A+  Y RA+   PN A+  GN
Sbjct: 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242
Query: 242 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP 301
           LA  YYE+G  D+AI  Y++AI   P F +AY NL NALK+ G V EA  CYN  L L P
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302
Query: 302 SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCY 361
           +H  +L NL NI  E   +  A   Y+  L V    +A  +NLA + +QQG   +A+  Y
Sbjct: 303 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362
Query: 362 NEVLRIDPLAADGLVNRGNTYKEI 385
            E +RI P  AD   N GNT KE+
Sbjct: 363 KEAIRISPTFADAYSNMGNTLKEM 386

>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388

Iteration: 1
 Score =  234 bits (598), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 134/380 (35%), Positives = 216/380 (56%), Gaps = 1/380 (0%)
Query: 73  MANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNP 132
           +A+   + GD + A R+ +      P+       L+S + +  RL+ +A     A+  NP
Sbjct: 5   LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64
Query: 133 LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYY 192
           LL +A+SNLGN+ K +G +QEA   Y  ALR++P F   + NLA   + +GD+  A+Q Y
Sbjct: 65  LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 124
Query: 193 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQ 251
             A++  P       +LGN+ KALG  +EA  CY +A++T+PN A+A+ NL   +  +G+
Sbjct: 125 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 184
Query: 252 ADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLG 311
             +AI ++++A+  DP FL+AY NLGN LK+    D A+  Y + LSL P+H     NL 
Sbjct: 185 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 244
Query: 312 NIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA 371
            +Y E  ++  A   Y+  + +       + NLA   K++G+ A+A  CYN  LR+ P  
Sbjct: 245 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 304
Query: 372 ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 431
           AD L N  N  +E G + +A++ Y +A+ + P  A AH+NLAS  +  G ++ A+  YK+
Sbjct: 305 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 364
Query: 432 ALLLRPDFPEATCNLLHTLQ 451
           A+ + P F +A  N+ +TL+
Sbjct: 365 AIRISPTFADAYSNMGNTLK 384

>pdb|2VSY|A Chain A, Xanthomonas Campestris Putative Ogt (Xcc0866), Apostructure Length = 568

Iteration: 1
 Score =  231 bits (590), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 149/448 (33%), Positives = 230/448 (51%), Gaps = 26/448 (5%)
Query: 435 LRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPIDP 494
           L P+ P  T  LL+  + +C W   D + ++V   + + V      +V+PF  ++     
Sbjct: 120 LLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVG-----AVEPFAFLSEDASA 174
Query: 495 MLALEISRKYASHCSIIASRFALPPFNHPVPIPIXXXXXXXXXXXXYVSSDFGNHPLSHL 554
              L  +R  A   +I AS   L P       P+            +VS+ FG HP   L
Sbjct: 175 AEQLACARTRAQ--AIAASVRPLAPTRVRSKGPLRVG---------FVSNGFGAHPTGLL 223
Query: 555 MGSVFG--MHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSDMIAKLINEDK 612
             ++F      + ++++  +A S +DG+  R R  ++A    DV+A+     AK I    
Sbjct: 224 TVALFEALQRRQPDLQMHLFATSGDDGSTLRTRL-AQASTLHDVTALGHLATAKHIRHHG 282
Query: 613 IQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIY 672
           I +L +L G+  G R E+FA++PAP+QV+++ +PGT+GA ++DY++ D F  P      Y
Sbjct: 283 IDLLFDLRGWGGGGRPEVFALRPAPVQVNWLAYPGTSGAPWMDYVLGDAFALPPALEPFY 342
Query: 673 SEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQLYKMDPEIFNT 732
           SE ++ +   +  +D  +    V +P   P R+  GLPE   +  CFN  YK++P+    
Sbjct: 343 SEHVLRLQGAFQPSDTSRV---VAEP---PSRTQCGLPEQGVVLCCFNNSYKLNPQSMAR 396
Query: 733 WCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADL 792
              +LR VP+S LWLL  P   + RLRA+A AQGV   +++F       +++ R   ADL
Sbjct: 397 MLAVLREVPDSVLWLLSGPGEADARLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRHADL 456
Query: 793 FLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEER 852
           FLDT   NAHTT +D LW G P++T P E  A RVAGSL    GL +EM V     +  +
Sbjct: 457 FLDTHPYNAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLGL-DEMNVADDAAFVAK 515
Query: 853 AVSLALDRQKLQALTNKLKSVRLTCPLF 880
           AV+LA D   L AL  ++  +R    +F
Sbjct: 516 AVALASDPAALTALHARVDVLRRASGVF 543

>pdb|2VSN|A Chain A, Structure And Topological Arrangement Of An O-Glcnac Transferase Homolog: Insight Into Molecular Control Of Intracellular Glycosylation Length = 568

Iteration: 1
 Score =  231 bits (588), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 149/448 (33%), Positives = 230/448 (51%), Gaps = 26/448 (5%)
Query: 435 LRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPIDP 494
           L P+ P  T  LL+  + +C W   D + ++V   + + V      +V+PF  ++     
Sbjct: 120 LLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVG-----AVEPFAFLSEDASA 174
Query: 495 MLALEISRKYASHCSIIASRFALPPFNHPVPIPIXXXXXXXXXXXXYVSSDFGNHPLSHL 554
              L  +R  A   +I AS   L P       P+            +VS+ FG HP   L
Sbjct: 175 AEQLACARTRAQ--AIAASVRPLAPTRVRSKGPLRVG---------FVSNGFGAHPTGLL 223
Query: 555 MGSVFG--MHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSDMIAKLINEDK 612
             ++F      + ++++  +A S +DG+  R R  ++A    DV+A+     AK I    
Sbjct: 224 TVALFEALQRRQPDLQMHLFATSGDDGSTLRTRL-AQASTLHDVTALGHLATAKHIRHHG 282
Query: 613 IQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIY 672
           I +L +L G+  G R E+FA++PAP+QV+++ +PGT+GA ++DY++ D F  P      Y
Sbjct: 283 IDLLFDLAGWGGGGRPEVFALRPAPVQVNWLAYPGTSGAPWMDYVLGDAFALPPALEPFY 342
Query: 673 SEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQLYKMDPEIFNT 732
           SE ++ +   +  +D  +    V +P   P R+  GLPE   +  CFN  YK++P+    
Sbjct: 343 SEHVLRLQGAFQPSDTSRV---VAEP---PSRTQCGLPEQGVVLCCFNNSYKLNPQSMAR 396
Query: 733 WCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADL 792
              +LR VP+S LWLL  P   + RLRA+A AQGV   +++F       +++ R   ADL
Sbjct: 397 MLAVLREVPDSVLWLLSGPGEADARLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRHADL 456
Query: 793 FLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEER 852
           FLDT   NAHTT +D LW G P++T P E  A RVAGSL    GL +EM V     +  +
Sbjct: 457 FLDTHPYNAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLGL-DEMNVADDAAFVAK 515
Query: 853 AVSLALDRQKLQALTNKLKSVRLTCPLF 880
           AV+LA D   L AL  ++  +R    +F
Sbjct: 516 AVALASDPAALTALHARVDVLRRASGVF 543

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score =  113 bits (282), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 59/134 (44%), Positives = 84/134 (62%), Gaps = 1/134 (0%)
Query: 169 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQR 228
           A AW NL   + + GD + A++YY++A++L P   +A+ NLGN Y   G   EAI  YQ+
Sbjct: 1   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 229 AVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVD 287
           A++  P +A A+ NL + YY++G  D AI YY++A+  DPR  EA+ NLGNA    G  D
Sbjct: 61  ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 120
Query: 288 EAIQCYNQCLSLQP 301
           EAI+ Y + L L P
Sbjct: 121 EAIEYYQKALELDP 134

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 99.8 bits (247), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 54/134 (40%), Positives = 75/134 (55%)
Query: 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 295
           A A+ NL + YY++G  D AI YY++A+  DPR  EA+ NLGNA    G  DEAI+ Y +
Sbjct: 1   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 296 CLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYA 355
            L L P   +A  NLGN Y +      A  YY+  L +    +  + NL   Y +QG+Y 
Sbjct: 61  ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 120
Query: 356 DAISCYNEVLRIDP 369
           +AI  Y + L +DP
Sbjct: 121 EAIEYYQKALELDP 134

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 93.6 bits (231), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 81/167 (48%), Gaps = 34/167 (20%)
Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 330
           EA+ NLGNA    G  DEAI+ Y + L L P   +A  NLGN            +YYK  
Sbjct: 2   EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGN------------AYYK-- 47
Query: 331 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 390
                               QG+Y +AI  Y + L +DP +A+   N GN Y + G   +
Sbjct: 48  --------------------QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE 87
Query: 391 AIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRP 437
           AI+ Y +A+ + P  AEA  NL +AY   G  + AI+ Y++AL L P
Sbjct: 88  AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 60/104 (57%)
Query: 343 NLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR 402
           NL   Y +QG+Y +AI  Y + L +DP +A+   N GN Y + G   +AI+ Y +A+ + 
Sbjct: 6   NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 65
Query: 403 PTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
           P  AEA  NL +AY   G  + AI+ Y++AL L P   EA  NL
Sbjct: 66  PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL 109

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 99.0 bits (245), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 50/111 (45%), Positives = 71/111 (63%)
Query: 39  LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP 98
           LG  YY+  DYD  I   ++AL L+P  AE + N+ NA+ ++GD D AI YY  A+EL P
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74
Query: 99  NFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQG 149
           N A+AW NL +AY ++G  +EA +  ++AL L+P   +A  NLGN  + QG
Sbjct: 75  NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/117 (43%), Positives = 73/117 (62%), Gaps = 1/117 (0%)
Query: 169 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQR 228
           A AW NL   + + GD + A++YY++A++L P   +A+ NLGN Y   G   EAI  YQ+
Sbjct: 9   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 229 AVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVG 284
           A++  P NA A+ NL + YY++G  D AI YY++A+  DP   EA  NLGNA +  G
Sbjct: 69  ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 79.3 bits (194), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 74/151 (49%), Gaps = 34/151 (22%)
Query: 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 295
           A A+ NL + YY++G  D AI YY++A+  DP   EA+ NLGNA    G  DEAI+ Y +
Sbjct: 9   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 296 CLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYA 355
            L L P++ +A  NLGN            +YYK                      QG+Y 
Sbjct: 69  ALELDPNNAEAWYNLGN------------AYYK----------------------QGDYD 94
Query: 356 DAISCYNEVLRIDPLAADGLVNRGNTYKEIG 386
           +AI  Y + L +DP  A+   N GN  ++ G
Sbjct: 95  EAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 79.3 bits (194), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 68/121 (56%), Gaps = 1/121 (0%)
Query: 332 AVTTGLSAP-FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 390
           A+  G SA  + NL   Y +QG+Y +AI  Y + L +DP  A+   N GN Y + G   +
Sbjct: 2   AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61
Query: 391 AIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTL 450
           AI+ Y +A+ + P  AEA  NL +AY   G  + AI+ Y++AL L P+  EA  NL +  
Sbjct: 62  AIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121
Query: 451 Q 451
           Q
Sbjct: 122 Q 122

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 95.5 bits (236), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/111 (45%), Positives = 69/111 (62%)
Query: 39  LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP 98
           LG  YY+  DYD  I   ++AL L P  AE + N+ NA+ ++GD D AI YY  A+EL P
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYP 74
Query: 99  NFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQG 149
           N A+AW NL +AY ++G  +EA +  ++AL L P   +A  NLGN  + QG
Sbjct: 75  NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNAKQKQG 125

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 89.4 bits (220), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 50/117 (42%), Positives = 72/117 (61%), Gaps = 1/117 (0%)
Query: 169 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQR 228
           A AW NL   + + GD + A++YY++A++L P   +A+ NLGN Y   G   EAI  YQ+
Sbjct: 9   AEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 229 AVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVG 284
           A++  P NA A+ NL + YY++G  D AI YY++A+   P   EA  NLGNA +  G
Sbjct: 69  ALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNAKQKQG 125

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 67/121 (55%), Gaps = 1/121 (0%)
Query: 332 AVTTGLSAP-FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 390
           A+  G SA  + NL   Y +QG+Y +AI  Y + L + P  A+   N GN Y + G   +
Sbjct: 2   AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDE 61
Query: 391 AIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTL 450
           AI+ Y +A+ + P  AEA  NL +AY   G  + AI+ Y++AL L P+  EA  NL +  
Sbjct: 62  AIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNAK 121
Query: 451 Q 451
           Q
Sbjct: 122 Q 122

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 82.4 bits (202), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 46/117 (39%), Positives = 69/117 (58%), Gaps = 1/117 (0%)
Query: 169 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQR 228
           A AW NL   + + GD  +A++YY++A++L P    A+ NLGN Y   G  Q+AI  YQ+
Sbjct: 9   AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQK 68
Query: 229 AVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVG 284
           A++  P NA A+    + YY++G    AI  Y++A+  DP   +A  NLGNA +  G
Sbjct: 69  ALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 73.6 bits (179), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 67/150 (44%), Gaps = 34/150 (22%)
Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 330
           EA+ NLGNA    G   +AI+ Y + L L P++  A  NLGN            +YYK  
Sbjct: 10  EAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGN------------AYYK-- 55
Query: 331 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 390
                               QG+Y  AI  Y + L +DP  A     RGN Y + G    
Sbjct: 56  --------------------QGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQK 95
Query: 391 AIQDYIRAITIRPTMAEAHANLASAYKDSG 420
           AI+DY +A+ + P  A+A  NL +A +  G
Sbjct: 96  AIEDYQKALELDPNNAKAKQNLGNAKQKQG 125

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 69.7 bits (169), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 63/121 (52%), Gaps = 1/121 (0%)
Query: 332 AVTTGLSAP-FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 390
           A+  G SA  + NL   Y +QG+Y  AI  Y + L +DP  A    N GN Y + G    
Sbjct: 2   AMDPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQK 61
Query: 391 AIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTL 450
           AI+ Y +A+ + P  A+A     +AY   G  + AI+ Y++AL L P+  +A  NL +  
Sbjct: 62  AIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAK 121
Query: 451 Q 451
           Q
Sbjct: 122 Q 122

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 77.0 bits (188), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 38/83 (45%), Positives = 55/83 (66%)
Query: 67  AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQ 126
           AE + N+ NA+ ++GD D AI YY  A+EL PN A+AW NL +AY ++G  +EA +  ++
Sbjct: 9   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 127 ALALNPLLVDAHSNLGNLMKAQG 149
           AL L+P   +A  NLGN  + QG
Sbjct: 69  ALELDPNNAEAKQNLGNAKQKQG 91

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 69.3 bits (168), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 49/77 (63%)
Query: 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 295
           A A+ NL + YY++G  D AI YY++A+  DP   EA+ NLGNA    G  DEAI+ Y +
Sbjct: 9   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 296 CLSLQPSHPQALTNLGN 312
            L L P++ +A  NLGN
Sbjct: 69  ALELDPNNAEAKQNLGN 85

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 332 AVTTGLSAP-FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 390
           A+  G SA  + NL   Y +QG+Y +AI  Y + L +DP  A+   N GN Y + G   +
Sbjct: 2   AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61
Query: 391 AIQDYIRAITIRPTMAEAHANLASAYKDSG 420
           AI+ Y +A+ + P  AEA  NL +A +  G
Sbjct: 62  AIEYYQKALELDPNNAEAKQNLGNAKQKQG 91

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 56.2 bits (134), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 367 IDPL-AADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAA 425
           +DP  +A+   N GN Y + G   +AI+ Y +A+ + P  AEA  NL +AY   G  + A
Sbjct: 3   MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 426 IKSYKQALLLRPDFPEATCNLLHTLQ 451
           I+ Y++AL L P+  EA  NL +  Q
Sbjct: 63  IEYYQKALELDPNNAEAKQNLGNAKQ 88

>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein Length = 184

Iteration: 1
 Score = 65.9 bits (159), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 76/154 (49%)
Query: 70  YGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALA 129
           Y ++ +  + KGD D AIR Y   ++  PN  +    L   YM  G  N+A +  ++ + 
Sbjct: 8   YMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV 67
Query: 130 LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRAL 189
           L+    +A+  LG+        Q A      A+ +   +A A+  L  ++   G+ ++A+
Sbjct: 68  LDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAI 127
Query: 190 QYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAI 223
           + Y++ + +KP F  AY ++G  Y+  G+  EA+
Sbjct: 128 EAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161

>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein Length = 184

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 12/163 (7%)
Query: 273 YNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLP--AAASYYKAT 330
           Y ++G+  +  G  D AI+ Y + L   P++ + L  LG  YM+   LP  A  S  K  
Sbjct: 8   YMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIG-LPNDAIESLKKFV 66
Query: 331 LAVTTGLSAPF----NNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIG 386
           +  TT   A +     N  +  KQ      AI      + ++ + AD     G  Y  +G
Sbjct: 67  VLDTTSAEAYYILGSANFMIDEKQA-----AIDALQRAIALNTVYADAYYKLGLVYDSMG 121
Query: 387 RVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSY 429
               AI+ Y + I+I+P    A+ ++  AY+  G  + A+K +
Sbjct: 122 EHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYF 164

>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein Length = 184

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/94 (31%), Positives = 51/94 (54%)
Query: 349 KQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEA 408
           + +G++  AI  Y +VL+ DP   + L+  G TY +IG   DAI+   + + +  T AEA
Sbjct: 16  RTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEA 75
Query: 409 HANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 442
           +  L SA       +AAI + ++A+ L   + +A
Sbjct: 76  YYILGSANFMIDEKQAAIDALQRAIALNTVYADA 109

>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 45/66 (68%)
Query: 67  AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQ 126
           AE + N+ NA+ ++GD D AI YY  A+EL P  A+AW NL +AY ++G  +EA +  ++
Sbjct: 3   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 62
Query: 127 ALALNP 132
           AL L+P
Sbjct: 63  ALELDP 68

>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70

Iteration: 1
 Score = 63.2 bits (152), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 43/67 (64%)
Query: 235 NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 294
           +A A+ NL + YY++G  D AI YY++A+  DPR  EA+ NLGNA    G  DEAI+ Y 
Sbjct: 2   SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 61
Query: 295 QCLSLQP 301
           + L L P
Sbjct: 62  KALELDP 68

>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 39/68 (57%)
Query: 336 GLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDY 395
           G +  + NL   Y +QG+Y +AI  Y + L +DP +A+   N GN Y + G   +AI+ Y
Sbjct: 1   GSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 60
Query: 396 IRAITIRP 403
            +A+ + P
Sbjct: 61  QKALELDP 68

>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 39/67 (58%)
Query: 371 AADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYK 430
           +A+   N GN Y + G   +AI+ Y +A+ + P  AEA  NL +AY   G  + AI+ Y+
Sbjct: 2   SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 61
Query: 431 QALLLRP 437
           +AL L P
Sbjct: 62  KALELDP 68

>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual Peptide- Binding Site Length = 243

Iteration: 1
 Score = 63.2 bits (152), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 1/167 (0%)
Query: 149 GLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLN 208
           G  ++A   + +A+      AI + N A L     +L RAL +Y +A++L  +   AY  
Sbjct: 37  GDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYG 96
Query: 209 LGNVYKALGMPQEAIMCYQRAVQT-RPNAIAFGNLASTYYERGQADMAILYYKQAIGCDP 267
            GNVY    M +EA   +++A++    N   F  L +   +  Q  +A+ Y ++A+  + 
Sbjct: 97  AGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE 156
Query: 268 RFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIY 314
              EA    G  L + G +DEA+  +       P H  A  N G  Y
Sbjct: 157 NDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTY 203

>pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region Of Human Pex5 Length = 368

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 107/246 (43%), Gaps = 30/246 (12%)
Query: 79  EKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAH 138
           ++GD+  A+  +  A++  P   +AW  L +      +   A    R+ L L P    A 
Sbjct: 76  QEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTAL 135
Query: 139 SNLGNLMKAQGLVQEAYSCYLEALRIQPTFA--------------------IAWSNLA-G 177
             L      + L ++A     + LR  P +A                    I  S L+  
Sbjct: 136 MALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195
Query: 178 LFMESGDLNRALQYYKEAVKLKPTF--PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
           LF+E  +L      +  AV+L PT   PD    LG ++   G   +A+ C+  A+  RPN
Sbjct: 196 LFLEVKEL------FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN 249
Query: 236 A-IAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 294
             + +  L +T     Q++ A+  Y++A+   P ++ +  NLG +  ++G   EA++ + 
Sbjct: 250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFL 309
Query: 295 QCLSLQ 300
           + L++Q
Sbjct: 310 EALNMQ 315

>pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region Of Human Pex5 Length = 368

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/216 (20%), Positives = 84/216 (38%), Gaps = 17/216 (7%)
Query: 248 ERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQAL 307
           + G    A+L ++ A+  DP+ +EA+  LG    +  +   AI    +CL L+P +  AL
Sbjct: 76  QEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTAL 135
Query: 308 TNLGNIYMEWNMLPAAASYYKATLAVTTGLS---------------APFNNLAVIYKQQG 352
             L   +   ++   A    +  L  T   +                P   +        
Sbjct: 136 MALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195
Query: 353 NYADAISCYNEVLRIDPLAADGLV--NRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHA 410
            + +    +   +R+DP + D  V    G  +   G    A+  +  A+++RP       
Sbjct: 196 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWN 255
Query: 411 NLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
            L +   +    E A+ +Y++AL L+P +  +  NL
Sbjct: 256 KLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNL 291

>pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor Length = 319

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 107/246 (43%), Gaps = 30/246 (12%)
Query: 79  EKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAH 138
           ++GD+  A+  +  A++  P   +AW  L +      +   A    R+ L L P    A 
Sbjct: 27  QEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTAL 86
Query: 139 SNLGNLMKAQGLVQEAYSCYLEALRIQPTFA--------------------IAWSNLA-G 177
             L      + L ++A     + LR  P +A                    I  S L+  
Sbjct: 87  MALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 146
Query: 178 LFMESGDLNRALQYYKEAVKLKPTF--PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
           LF+E  +L      +  AV+L PT   PD    LG ++   G   +A+ C+  A+  RPN
Sbjct: 147 LFLEVKEL------FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN 200
Query: 236 A-IAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 294
             + +  L +T     Q++ A+  Y++A+   P ++ +  NLG +  ++G   EA++ + 
Sbjct: 201 DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFL 260
Query: 295 QCLSLQ 300
           + L++Q
Sbjct: 261 EALNMQ 266

>pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor Length = 319

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/216 (20%), Positives = 84/216 (38%), Gaps = 17/216 (7%)
Query: 248 ERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQAL 307
           + G    A+L ++ A+  DP+ +EA+  LG    +  +   AI    +CL L+P +  AL
Sbjct: 27  QEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTAL 86
Query: 308 TNLGNIYMEWNMLPAAASYYKATLAVTTGLS---------------APFNNLAVIYKQQG 352
             L   +   ++   A    +  L  T   +                P   +        
Sbjct: 87  MALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 146
Query: 353 NYADAISCYNEVLRIDPLAADGLV--NRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHA 410
            + +    +   +R+DP + D  V    G  +   G    A+  +  A+++RP       
Sbjct: 147 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWN 206
Query: 411 NLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
            L +   +    E A+ +Y++AL L+P +  +  NL
Sbjct: 207 KLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNL 242

>pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2 Length = 305

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 107/246 (43%), Gaps = 30/246 (12%)
Query: 79  EKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAH 138
           ++GD+  A+  +  A++  P   +AW  L +      +   A    R+ L L P    A 
Sbjct: 13  QEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTAL 72
Query: 139 SNLGNLMKAQGLVQEAYSCYLEALRIQPTFA--------------------IAWSNLA-G 177
             L      + L ++A     + LR  P +A                    I  S L+  
Sbjct: 73  MALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 132
Query: 178 LFMESGDLNRALQYYKEAVKLKPTF--PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
           LF+E  +L      +  AV+L PT   PD    LG ++   G   +A+ C+  A+  RPN
Sbjct: 133 LFLEVKEL------FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN 186
Query: 236 A-IAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 294
             + +  L +T     Q++ A+  Y++A+   P ++ +  NLG +  ++G   EA++ + 
Sbjct: 187 DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFL 246
Query: 295 QCLSLQ 300
           + L++Q
Sbjct: 247 EALNMQ 252

>pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2 Length = 305

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/216 (20%), Positives = 84/216 (38%), Gaps = 17/216 (7%)
Query: 248 ERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQAL 307
           + G    A+L ++ A+  DP+ +EA+  LG    +  +   AI    +CL L+P +  AL
Sbjct: 13  QEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTAL 72
Query: 308 TNLGNIYMEWNMLPAAASYYKATLAVTTGLS---------------APFNNLAVIYKQQG 352
             L   +   ++   A    +  L  T   +                P   +        
Sbjct: 73  MALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 132
Query: 353 NYADAISCYNEVLRIDPLAADGLV--NRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHA 410
            + +    +   +R+DP + D  V    G  +   G    A+  +  A+++RP       
Sbjct: 133 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWN 192
Query: 411 NLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
            L +   +    E A+ +Y++AL L+P +  +  NL
Sbjct: 193 KLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNL 228

>pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With The Tpr Domain Of Human Pex5p Length = 328

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 107/246 (43%), Gaps = 30/246 (12%)
Query: 79  EKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAH 138
           ++GD+  A+  +  A++  P   +AW  L +      +   A    R+ L L P    A 
Sbjct: 36  QEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTAL 95
Query: 139 SNLGNLMKAQGLVQEAYSCYLEALRIQPTFA--------------------IAWSNLA-G 177
             L      + L ++A     + LR  P +A                    I  S L+  
Sbjct: 96  MALAVSFTNESLQRQACETLRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 155
Query: 178 LFMESGDLNRALQYYKEAVKLKPTF--PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
           LF+E  +L      +  AV+L PT   PD    LG ++   G   +A+ C+  A+  RPN
Sbjct: 156 LFLEVKEL------FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN 209
Query: 236 A-IAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 294
             + +  L +T     Q++ A+  Y++A+   P ++ +  NLG +  ++G   EA++ + 
Sbjct: 210 DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFL 269
Query: 295 QCLSLQ 300
           + L++Q
Sbjct: 270 EALNMQ 275

>pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With The Tpr Domain Of Human Pex5p Length = 328

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/216 (20%), Positives = 84/216 (38%), Gaps = 17/216 (7%)
Query: 248 ERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQAL 307
           + G    A+L ++ A+  DP+ +EA+  LG    +  +   AI    +CL L+P +  AL
Sbjct: 36  QEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTAL 95
Query: 308 TNLGNIYMEWNMLPAAASYYKATLAVTTGLS---------------APFNNLAVIYKQQG 352
             L   +   ++   A    +  L  T   +                P   +        
Sbjct: 96  MALAVSFTNESLQRQACETLRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 155
Query: 353 NYADAISCYNEVLRIDPLAADGLV--NRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHA 410
            + +    +   +R+DP + D  V    G  +   G    A+  +  A+++RP       
Sbjct: 156 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWN 215
Query: 411 NLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
            L +   +    E A+ +Y++AL L+P +  +  NL
Sbjct: 216 KLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNL 251

>pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p Length = 328

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 107/246 (43%), Gaps = 30/246 (12%)
Query: 79  EKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAH 138
           ++GD+  A+  +  A++  P   +AW  L +      +   A    R+ L L P    A 
Sbjct: 36  QEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTAL 95
Query: 139 SNLGNLMKAQGLVQEAYSCYLEALRIQPTFA--------------------IAWSNLA-G 177
             L      + L ++A     + LR  P +A                    I  S L+  
Sbjct: 96  MALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 155
Query: 178 LFMESGDLNRALQYYKEAVKLKPTF--PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
           LF+E  +L      +  AV+L PT   PD    LG ++   G   +A+ C+  A+  RPN
Sbjct: 156 LFLEVKEL------FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN 209
Query: 236 A-IAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 294
             + +  L +T     Q++ A+  Y++A+   P ++ +  NLG +  ++G   EA++ + 
Sbjct: 210 DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFL 269
Query: 295 QCLSLQ 300
           + L++Q
Sbjct: 270 EALNMQ 275

>pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p Length = 328

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/216 (20%), Positives = 84/216 (38%), Gaps = 17/216 (7%)
Query: 248 ERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQAL 307
           + G    A+L ++ A+  DP+ +EA+  LG    +  +   AI    +CL L+P +  AL
Sbjct: 36  QEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTAL 95
Query: 308 TNLGNIYMEWNMLPAAASYYKATLAVTTGLS---------------APFNNLAVIYKQQG 352
             L   +   ++   A    +  L  T   +                P   +        
Sbjct: 96  MALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 155
Query: 353 NYADAISCYNEVLRIDPLAADGLV--NRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHA 410
            + +    +   +R+DP + D  V    G  +   G    A+  +  A+++RP       
Sbjct: 156 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWN 215
Query: 411 NLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
            L +   +    E A+ +Y++AL L+P +  +  NL
Sbjct: 216 KLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNL 251

>pdb|4A1S|A Chain A, Crystallographic Structure Of The Pins:insc Complex Length = 411

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 132/347 (38%), Gaps = 85/347 (24%)
Query: 140 NLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK 199
           N G+        Q A     E LR   T +  +S L   +   GD N+A+QY+K  + L 
Sbjct: 60  NAGDCRAGVAFFQAAIQAGTEDLR---TLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA 116
Query: 200 PTFPD------AYLNLGNVYKALGMPQEAIMCYQRAV-------QTRPNAIAFGNLASTY 246
            +  D      +  NLGN  K +G   EA +C +R +              A  NL + Y
Sbjct: 117 KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVY 176
Query: 247 YERGQA-----------------DMAILYYKQAI---------GCDPRFLEAYNNLGNAL 280
           + +G+                    A+ +Y++ +         G   R   A  NLGN  
Sbjct: 177 HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGR---ACGNLGNTY 233
Query: 281 KDVGRVDEAIQCYNQCLSL------QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT 334
             +G    AI+ + + L +      + +  +A +NLGN ++       AA +YK TLA+ 
Sbjct: 234 YLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA 293
Query: 335 TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQD 394
             L                  +A SCY               + GNTY  +     AI+ 
Sbjct: 294 VELGER-------------EVEAQSCY---------------SLGNTYTLLHEFNTAIEY 325
Query: 395 YIRAITIRPTM----AEAHA--NLASAYKDSGHVEAAIKSYKQALLL 435
           + R + I   +     EA A  +L +A+   G  E A+K  +Q L L
Sbjct: 326 HNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372

>pdb|3SF4|A Chain A, Crystal Structure Of The Complex Between The Conserved Cell Polarity Proteins Inscuteable And Lgn Length = 406

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 80/201 (39%), Gaps = 39/201 (19%)
Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSL------QPSHPQALTNLGNIYME-------- 316
           +A  NLGN LK +G  DEAI C  + L +      +    +AL NLGN+Y          
Sbjct: 88  KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCP 147
Query: 317 ------------WNMLPAAASYYKATLAVTTGL------SAPFNNLAVIYKQQGNYADAI 358
                        + L AA  +Y+  L++ T L         F NL   +   GN+ DA+
Sbjct: 148 GPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAV 207
Query: 359 SCYNEVLRIDPLAADGLVNR------GNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANL 412
             + + L I     D    R      GN Y  +G    A + Y + + +   + +     
Sbjct: 208 IAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 267
Query: 413 ASAYKDSGHVEAAIKSYKQAL 433
            S Y   G+    ++ Y++A+
Sbjct: 268 QSCYS-LGNTYTLLQDYEKAI 287

>pdb|3RO2|A Chain A, Structures Of The LgnNUMA COMPLEX Length = 338

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 79/201 (39%), Gaps = 39/201 (19%)
Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSL------QPSHPQALTNLGNIYME-------- 316
           +A  NLGN LK +G  DEAI C  + L +      +    +AL NLGN+Y          
Sbjct: 84  KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCP 143
Query: 317 ------------WNMLPAAASYYKATLAVTTGL------SAPFNNLAVIYKQQGNYADAI 358
                        N L AA   Y+  L++ T L         F NL   +   GN+ DA+
Sbjct: 144 GPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAV 203
Query: 359 SCYNEVLRIDPLAADGLVNR------GNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANL 412
             + + L I     D    R      GN Y  +G    A + Y + + +   + +     
Sbjct: 204 IAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263
Query: 413 ASAYKDSGHVEAAIKSYKQAL 433
            S Y   G+    ++ Y++A+
Sbjct: 264 QSCYS-LGNTYTLLQDYEKAI 283

>pdb|4G2V|A Chain A, Structure Complex Of Lgn Binding With Frmpd1 Length = 340

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 79/201 (39%), Gaps = 39/201 (19%)
Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSL------QPSHPQALTNLGNIYME-------- 316
           +A  NLGN LK +G  DEAI C  + L +      +    +AL NLGN+Y          
Sbjct: 86  KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCP 145
Query: 317 ------------WNMLPAAASYYKATLAVTTGL------SAPFNNLAVIYKQQGNYADAI 358
                        N L AA   Y+  L++ T L         F NL   +   GN+ DA+
Sbjct: 146 GPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAV 205
Query: 359 SCYNEVLRIDPLAADGLVNR------GNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANL 412
             + + L I     D    R      GN Y  +G    A + Y + + +   + +     
Sbjct: 206 IAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 265
Query: 413 ASAYKDSGHVEAAIKSYKQAL 433
            S Y   G+    ++ Y++A+
Sbjct: 266 QSCYS-LGNTYTLLQDYEKAI 285

>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Query: 353 NYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANL 412
           N+  A+  Y + + ++P  A    NR   Y ++G    A+QD  RAI I P  ++A+  +
Sbjct: 27  NFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM 86
Query: 413 ASAYKD-SGHVEAAIKSYKQALLLRPDFPEATCNL 446
             A    + HVEA +  YK+AL L PD      NL
Sbjct: 87  GLALSSLNKHVEA-VAYYKKALELDPDNETYKSNL 120

>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length = 258

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 95/235 (40%), Gaps = 30/235 (12%)
Query: 210 GNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAI--GCDP 267
           GN +       EAI  Y +A +   +     N A+  YE+G+ + AI     A+  G + 
Sbjct: 12  GNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM 71
Query: 268 R-----FLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPA 322
           R       +++  +GNA   +G + + I+ Y + L+   +    LT L N   E  +  A
Sbjct: 72  RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-ADILTKLRN--AEKELKKA 128
Query: 323 AASYY----KATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNR 378
            A  Y    KA  A   G           Y  + ++ +A+  Y E+++  P  A G  NR
Sbjct: 129 EAEAYVNPEKAEEARLEGKE---------YFTKSDWPNAVKAYTEMIKRAPEDARGYSNR 179
Query: 379 GNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQAL 433
                ++    +AI D  +AI   P       N   AY      + A+K Y  AL
Sbjct: 180 AAALAKLMSFPEAIADCNKAIEKDP-------NFVRAYIRKATAQIAVKEYASAL 227

>pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal Seven Residues Of Hcn2 Length = 365

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 65/297 (21%), Positives = 116/297 (39%), Gaps = 39/297 (13%)
Query: 180 MESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAI-A 238
           ++ GDL   + + + A+   P   +A+  LG         Q AI+  QR ++ +PN + A
Sbjct: 76  LKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKA 135
Query: 239 FGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLS 298
              LA +Y        A    K  I  +P++           K + +  +      + +S
Sbjct: 136 LMALAVSYTNTSHQQDACEALKNWIKQNPKY-----------KYLVKNKKGSPGLTRRMS 184
Query: 299 LQPSHPQALTNLGNIYMEWNMLPAAASYYKATLA---VTTGLSAPFNNLAVIYKQQGNYA 355
             P     L  +  +Y+E       A++    +    + TGL        V++   G + 
Sbjct: 185 KSPVDSSVLEGVKELYLE-------AAHQNGDMIDPDLQTGL-------GVLFHLSGEFN 230
Query: 356 DAISCYNEVLRIDPLAADGLVNR-GNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLAS 414
            AI  +N  L + P     L NR G T     R  +A++ Y RA+ I+P    +  NL  
Sbjct: 231 RAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGI 289
Query: 415 AYKDSGHVEAAIKSYKQALLLRPD--------FPEATCNLLHTLQCVCSWEDRDRMF 463
           +  + G    A+ ++  AL L+           P  + N+   L+   S  D+  +F
Sbjct: 290 SCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELF 346

>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex With A Hsc70 Peptide Length = 118

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 45/90 (50%)
Query: 352 GNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHAN 411
           GN  DA+ CY+E +++DP       NR   Y + G    A +D  + + ++P   + ++ 
Sbjct: 18  GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSR 77
Query: 412 LASAYKDSGHVEAAIKSYKQALLLRPDFPE 441
            A+A +     E A ++Y++ L    + P+
Sbjct: 78  KAAALEFLNRFEEAKRTYEEGLKHEANNPQ 107

>pdb|2HO1|A Chain A, Functional Characterization Of Pseudomonas Aeruginosa Pilf Length = 252

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 3/131 (2%)
Query: 204 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQA 262
           DAY+ LG  Y   G  ++A +  ++A++  P+ A A   LA  +    +  +A   Y++A
Sbjct: 38  DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEXEPKLADEEYRKA 97
Query: 263 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCL--SLQPSHPQALTNLGNIYMEWNML 320
           +  D R     NN G  L +  R +EA Q   +    +L P   +   NLG + ++    
Sbjct: 98  LASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQXKKP 157
Query: 321 PAAASYYKATL 331
             A  Y++ +L
Sbjct: 158 AQAKEYFEKSL 168

>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2) Length = 283

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 55/126 (43%), Gaps = 17/126 (13%)
Query: 85  LAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALAL--------NPLLVD 136
           LAIR   +  +  P  A   +NLA  Y ++G+  EA   C++AL +        +P +  
Sbjct: 70  LAIREKTLGKD-HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAK 128
Query: 137 AHSNLGNLMKAQGLVQEAYSCYLEALRI--------QPTFAIAWSNLAGLFMESGDLNRA 188
             SNL  L + QG  +E    Y  AL I         P  A   +NLA  +++ G    A
Sbjct: 129 QLSNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDA 188
Query: 189 LQYYKE 194
              YKE
Sbjct: 189 ETLYKE 194

>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain 1 Length = 311

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 56/126 (44%), Gaps = 17/126 (13%)
Query: 85  LAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALAL--------NPLLVD 136
           LAIR   +  +  P  A   +NLA  Y ++G+  EA   C++AL +        +P +  
Sbjct: 96  LAIREKTLGKD-HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAK 154
Query: 137 AHSNLGNLMKAQGLVQEAYSCYLEALRI--------QPTFAIAWSNLAGLFMESGDLNRA 188
             +NL  L + QG  +E    Y  AL I         P  A   +NLA  +++ G   +A
Sbjct: 155 QLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQA 214
Query: 189 LQYYKE 194
              YKE
Sbjct: 215 ETLYKE 220

>pdb|2FI7|A Chain A, Crystal Structure Of Pilf : Functional Implication In The Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa Length = 265

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 3/131 (2%)
Query: 204 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQA 262
           DAY+ LG  Y   G  ++A +  ++A++  P+ A A   LA  +    +  +A   Y++A
Sbjct: 51  DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKA 110
Query: 263 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCL--SLQPSHPQALTNLGNIYMEWNML 320
           +  D R     NN G  L +  R +EA Q   +    +L P   +   NLG + ++    
Sbjct: 111 LASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKP 170
Query: 321 PAAASYYKATL 331
             A  Y++ +L
Sbjct: 171 AQAKEYFEKSL 181

>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Query: 6   AHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR 65
            ++ ++ G Y QA++H     +RNP          A Y +L ++ + +   EE ++LEP 
Sbjct: 23  GNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT 82
Query: 66  FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMR 113
           F + Y   A A +   D   A+  Y  A++L  +  +A    A  Y R
Sbjct: 83  FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEA----ADGYQR 126

>pdb|3ASG|A Chain A, Mama D159k Mutant 2 Length = 186

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 63/160 (39%)
Query: 273 YNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLA 332
           Y + G +    GR  +A+    Q             +LG  Y++   +       + +LA
Sbjct: 11  YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA 70
Query: 333 VTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAI 392
                      L + Y Q   Y  A+    +V   +P+  +     G   K +GR  +AI
Sbjct: 71  DAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALKNLGRFDEAI 130
Query: 393 QDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQA 432
             +  A+ +RP   + H  +A +Y+  G  E A+  +K+A
Sbjct: 131 DSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170

>pdb|2PL2|A Chain A, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein In Thermus Thermophilus Hb27 Length = 217

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 71/170 (41%), Gaps = 12/170 (7%)
Query: 275 NLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT 334
            LG  L  +GR D A+  + + L   P  P+AL  L    ++  ++  A    K  +A T
Sbjct: 10  RLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART 69
Query: 335 TGLSAPFNNLA----VIYKQ-------QGNYADAISCYNEVLRIDPLAADGLVNRGNTYK 383
                 +  L+     +Y+Q       +G    A+S   +  R++P  A   + RG  Y 
Sbjct: 70  PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYA 129
Query: 384 EIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQAL 433
            +G    A     +A+ +  T  E  + LA  Y   G ++ A+  Y +AL
Sbjct: 130 LLGERDKAEASLKQALALEDT-PEIRSALAELYLSMGRLDEALAQYAKAL 178

>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain Length = 283

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 17/126 (13%)
Query: 85  LAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALAL--------NPLLVD 136
           LAIR   +  +  P  A   +NLA  Y ++G+  EA   C++AL +        +P +  
Sbjct: 70  LAIREKTLGKD-HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAK 128
Query: 137 AHSNLGNLMKAQGLVQEAYSCYLEALRI--------QPTFAIAWSNLAGLFMESGDLNRA 188
             +NL  L + QG  +E    Y  AL I         P  A   +NLA  +++ G    A
Sbjct: 129 QLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDA 188
Query: 189 LQYYKE 194
              YKE
Sbjct: 189 ETLYKE 194

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	887
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	0.0
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-37
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	7e-34
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	8e-32
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-28
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-27
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-18
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-135
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-130
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-102
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-96
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-41
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-13
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-133
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-47
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	7e-40
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	9e-32
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	5e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-114
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-110
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-51
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-39
3q3e_A	631	HMW1C-like glycosyltransferase; N-glycosylation; 2	1e-111
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-106
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	9e-97
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	6e-87
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-49
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-31
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-97
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-76
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-50
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-45
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-25
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-95
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	8e-90
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-89
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-74
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-74
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-28
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-94
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-78
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-75
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-93
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-89
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-87
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-83
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-83
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-83
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-79
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-74
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-72
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-70
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-65
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-65
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-59
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-41
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-38
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-36
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-92
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	8e-75
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-73
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	8e-23
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-85
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-83
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-82
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-62
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-84
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-75
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-45
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-81
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-76
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-76
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-32
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-79
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-75
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-72
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-64
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-48
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-75
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-67
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-66
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-66
4g1t_A	472	Interferon-induced protein with tetratricopeptide	7e-72
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-70
4g1t_A	472	Interferon-induced protein with tetratricopeptide	4e-55
4g1t_A	472	Interferon-induced protein with tetratricopeptide	5e-21
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	5e-71
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-68
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	6e-64
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-56
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	6e-69
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-62
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-62
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-53
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	8e-34
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-67
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-64
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-63
3u4t_A	272	TPR repeat-containing protein; structural genomics	5e-63
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-47
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-45
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	7e-67
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	8e-62
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-61
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	9e-59
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	4e-66
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-62
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	4e-60
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-54
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	6e-31
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-21
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	4e-62
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	7e-49
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	3e-43
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	4e-15
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	9e-57
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-54
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-51
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-43
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	4e-56
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	8e-56
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	4e-47
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-36
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	5e-24
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	4e-55
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-50
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-47
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-46
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	3e-23
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-17
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-08
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	3e-54
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	4e-53
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-49
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	3e-51
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	1e-48
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	2e-25
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-47
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	6e-44
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	1e-41
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-41
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	5e-41
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	3e-39
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	3e-37
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	3e-31
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-20
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	3e-11
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	4e-45
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	9e-44
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	7e-43
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	6e-38
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	8e-25
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	2e-15
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	5e-43
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-42
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-42
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-41
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	7e-40
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-31
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-24
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	5e-41
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	2e-40
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	4e-40
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	1e-34
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	1e-30
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	4e-26
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	6e-39
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	3e-35
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	3e-35
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	4e-34
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	2e-32
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	3e-32
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	6e-32
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	8e-21
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-38
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-33
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-05
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	2e-35
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	5e-33
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	3e-29
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	4e-05
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	2e-30
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	2e-25
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	9e-22
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	2e-19
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	5e-28
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-27
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	6e-27
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	7e-26
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	8e-22
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	8e-28
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	2e-26
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	2e-26
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	1e-25
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	5e-25
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	1e-23
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	2e-15
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	4e-27
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	3e-24
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	5e-24
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	3e-23
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	8e-23
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	1e-22
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	2e-22
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	3e-18
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	4e-15
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	6e-07
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	7e-05
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	5e-27
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	4e-23
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	9e-23
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	5e-17
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	1e-12
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	3e-06
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	5e-27
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	1e-26
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	3e-26
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	2e-25
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	7e-24
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	1e-22
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	8e-22
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	3e-21
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	8e-18
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	4e-25
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	2e-24
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	2e-23
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	5e-23
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	3e-21
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	1e-08
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	2e-06
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	4e-25
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-24
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-24
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	4e-23
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-22
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	7e-22
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-21
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-19
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-15
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	6e-14
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-06
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	1e-24
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	1e-22
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	4e-22
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-19
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	5e-05
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	9e-24
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-22
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-22
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-22
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-21
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	3e-21
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	4e-21
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	5e-16
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	3e-13
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	3e-13
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	1e-23
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	1e-23
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	1e-22
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	2e-20
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	1e-19
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	5e-19
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	3e-15
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	2e-11
2kat_A	115	Uncharacterized protein; NESG, structure, structur	1e-23
2kat_A	115	Uncharacterized protein; NESG, structure, structur	1e-22
2kat_A	115	Uncharacterized protein; NESG, structure, structur	2e-21
2kat_A	115	Uncharacterized protein; NESG, structure, structur	4e-20
2kat_A	115	Uncharacterized protein; NESG, structure, structur	2e-18
2kat_A	115	Uncharacterized protein; NESG, structure, structur	3e-18
2kat_A	115	Uncharacterized protein; NESG, structure, structur	7e-18
2kat_A	115	Uncharacterized protein; NESG, structure, structur	2e-15
2kat_A	115	Uncharacterized protein; NESG, structure, structur	9e-12
2kat_A	115	Uncharacterized protein; NESG, structure, structur	1e-11
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-23
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	3e-22
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-20
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-20
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-19
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-18
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	5e-17
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	3e-14
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	6e-14
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	2e-23
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	3e-22
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	1e-17
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	4e-12
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	3e-06
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	6e-05
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	6e-23
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	1e-21
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	2e-19
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	5e-17
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	9e-17
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	1e-15
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	5e-12
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	1e-05
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	2e-21
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	2e-20
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	4e-20
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	7e-20
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	1e-17
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	1e-16
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	5e-12
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	5e-11
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-21
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	8e-21
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-20
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	1e-19
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	1e-18
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	6e-18
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	7e-18
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	7e-17
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-16
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-14
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	4e-13
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	4e-04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	2e-20
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	2e-20
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	4e-19
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	6e-19
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	2e-18
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	2e-17
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	5e-17
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	5e-16
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	2e-15
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	3e-13
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	2e-07
3k9i_A	117	BH0479 protein; putative protein binding protein,	5e-20
3k9i_A	117	BH0479 protein; putative protein binding protein,	7e-18
3k9i_A	117	BH0479 protein; putative protein binding protein,	9e-18
3k9i_A	117	BH0479 protein; putative protein binding protein,	7e-17
3k9i_A	117	BH0479 protein; putative protein binding protein,	2e-16
3k9i_A	117	BH0479 protein; putative protein binding protein,	3e-14
3k9i_A	117	BH0479 protein; putative protein binding protein,	1e-13
3k9i_A	117	BH0479 protein; putative protein binding protein,	3e-10
3k9i_A	117	BH0479 protein; putative protein binding protein,	8e-09
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	1e-18
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	1e-15
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	2e-15
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	1e-12
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	3e-05
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	1e-18
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	4e-18
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	1e-17
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	3e-17
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	4e-17
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	4e-15
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	1e-10
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	2e-09
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	1e-18
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	3e-18
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	4e-17
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	3e-16
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	2e-15
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	6e-15
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	1e-13
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	3e-10
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	1e-08
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	2e-18
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	7e-18
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	6e-17
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	6e-16
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	1e-14
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	1e-11
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	6e-11
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	3e-08
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	1e-07
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	7e-17
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	4e-16
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	3e-10
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	2e-16
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	3e-15
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	7e-15
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	1e-14
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	3e-13
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	1e-11
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	2e-07
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	3e-07
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	2e-16
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	4e-14
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	6e-14
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	1e-13
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	2e-13
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	6e-12
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	7e-12
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	6e-11
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	1e-09
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	3e-16
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	8e-16
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	9e-16
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	9e-15
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	4e-13
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	7e-11
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	2e-07
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	1e-06
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	7e-16
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	2e-15
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	3e-15
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	8e-15
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	1e-12
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	3e-11
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	2e-07
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	1e-15
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	1e-15
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	3e-15
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	2e-14
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	1e-12
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	2e-11
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	2e-07
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	2e-06
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	3e-15
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	3e-14
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	6e-14
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	2e-13
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	6e-12
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	9e-09
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	8e-07
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	1e-06
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	2e-05
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	7e-15
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	6e-08
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	4e-14
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	8e-13
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	1e-12
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	3e-12
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	9e-10
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	4e-07
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	2e-06
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	5e-06
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	2e-05
2l6j_A	111	TPR repeat-containing protein associated with HSP;	1e-13
2l6j_A	111	TPR repeat-containing protein associated with HSP;	1e-12
2l6j_A	111	TPR repeat-containing protein associated with HSP;	2e-12
2l6j_A	111	TPR repeat-containing protein associated with HSP;	1e-11
2l6j_A	111	TPR repeat-containing protein associated with HSP;	3e-09
2l6j_A	111	TPR repeat-containing protein associated with HSP;	7e-09
2l6j_A	111	TPR repeat-containing protein associated with HSP;	8e-09
2l6j_A	111	TPR repeat-containing protein associated with HSP;	1e-08
2l6j_A	111	TPR repeat-containing protein associated with HSP;	1e-06
2l6j_A	111	TPR repeat-containing protein associated with HSP;	4e-04
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	5e-13
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	2e-12
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	2e-11
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	2e-11
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	2e-11
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	1e-10
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	3e-08
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	1e-12
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	4e-11
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	2e-10
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	3e-07
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	1e-11
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	4e-09
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	4e-11
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	3e-06
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	3e-05
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	5e-11
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	9e-08
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	1e-07
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	4e-07
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	4e-06
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	7e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	1e-10
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	1e-07
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	2e-07
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	2e-05
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	8e-05
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	4e-10
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	4e-08
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	1e-07
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	8e-07
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	1e-06
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	5e-06
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	1e-09
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	2e-09
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	4e-09
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	4e-08
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	1e-07
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	4e-07
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	4e-06
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	2e-09
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	1e-06
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	2e-05
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	3e-05
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	2e-09
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	8e-08
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	6e-06
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	8e-06
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	1e-05
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	5e-09
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	3e-08
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	1e-08
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	4e-08
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	2e-07
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	5e-05
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	4e-08
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	7e-08
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	8e-08
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	1e-07
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	4e-06
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	1e-05
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	1e-05
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	5e-08
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	5e-06
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	8e-06
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	6e-05
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	1e-07
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	5e-06
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	5e-06
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	2e-05
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	3e-05
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	6e-07
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	6e-07
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	1e-04
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	1e-06
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	5e-06
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	8e-06
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	4e-05
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	6e-05
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	2e-04
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	2e-05
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	2e-05
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	6e-04
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	1e-04
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	6e-04
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	9e-04

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score =  564 bits (1454), Expect = 0.0
 Identities = 165/605 (27%), Positives = 258/605 (42%), Gaps = 60/605 (9%)

Query: 284 GRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNN 343
                 +      +  +P    A   L +                               
Sbjct: 3   ADGPRELLQLRAAVRHRPQDFVAWLMLADAE----------------------------- 33

Query: 344 LAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRP 403
                   G+           L + P   + +   G       R  +A     +A    P
Sbjct: 34  -----LGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAP 88

Query: 404 TMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMF 463
                   L  A +D+G  EAA  +Y +A  L P+ P  T  LL+  + +C W   D + 
Sbjct: 89  EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLS 148

Query: 464 SEVEGIIRRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHP 523
           ++V   + +      + +V+PF  ++        L  +R  A   +      A       
Sbjct: 149 AQVRAAVAQG-----VGAVEPFAFLSEDASAAEQLACARTRAQAIAASVRPLAPTRVRSK 203

Query: 524 VPIPIRLDGGLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEV--FCYALSPNDGTE 581
                        LRVG+VS+ FG HP   L  ++F    +   ++    +A S +DG+ 
Sbjct: 204 -----------GPLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQMHLFATSGDDGST 252

Query: 582 WRQRTQSEAEHFVDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVS 641
            R R  ++A    DV+A+     AK I    I +L +L G+  G R E+FA++PAP+QV+
Sbjct: 253 LRTR-LAQASTLHDVTALGHLATAKHIRHHGIDLLFDLRGWGGGGRPEVFALRPAPVQVN 311

Query: 642 YMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQ 701
           ++ +PGT+GA ++DY++ D F  P      YSE ++ +   +  +D  +           
Sbjct: 312 WLAYPGTSGAPWMDYVLGDAFALPPALEPFYSEHVLRLQGAFQPSDTSR------VVAEP 365

Query: 702 PKRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAY 761
           P R+  GLPE   +  CFN  YK++P+       +LR VP+S LWLL  P   + RLRA+
Sbjct: 366 PSRTQCGLPEQGVVLCCFNNSYKLNPQSMARMLAVLREVPDSVLWLLSGPGEADARLRAF 425

Query: 762 AVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLE 821
           A AQGV   +++F       +++ R   ADLFLDT   NAHTT +D LW G P++T P E
Sbjct: 426 AHAQGVDAQRLVFMPKLPHPQYLARYRHADLFLDTHPYNAHTTASDALWTGCPVLTTPGE 485

Query: 822 KMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFD 881
             A RVAGSL    GL +EM V     +  +AV+LA D   L AL  ++  +R    +F 
Sbjct: 486 TFAARVAGSLNHHLGL-DEMNVADDAAFVAKAVALASDPAALTALHARVDVLRRASGVFH 544

Query: 882 TARWV 886
              + 
Sbjct: 545 MDGFA 549

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score =  147 bits (373), Expect = 2e-37
 Identities = 36/162 (22%), Positives = 52/162 (32%), Gaps = 3/162 (1%)

Query: 81  GDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSN 140
            D    +     A+  RP    AW  LA A +  G         ++ LAL+P   +A + 
Sbjct: 3   ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62

Query: 141 LGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKP 200
           LG +   Q    EA     +A    P        L     ++G    A   Y  A +L P
Sbjct: 63  LGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP 122

Query: 201 TFPDAYLNLGNVYKALGMP---QEAIMCYQRAVQTRPNAIAF 239
             P     L N  + L             + AV     A+  
Sbjct: 123 EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEP 164

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score =  136 bits (345), Expect = 7e-34
 Identities = 42/201 (20%), Positives = 62/201 (30%), Gaps = 36/201 (17%)

Query: 148 QGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYL 207
                        A+R +P   +AW  LA   +  GD        +  + L P  P+A  
Sbjct: 2   TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA 61

Query: 208 NLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDP 267
            LG V        EA +  Q+A                                     P
Sbjct: 62  RLGRVRWTQQRHAEAAVLLQQASD---------------------------------AAP 88

Query: 268 RFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM---EWNMLPAAA 324
                   LG+AL+D G+ + A   Y +   L P  P     L N      +W  L   +
Sbjct: 89  EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLS 148

Query: 325 SYYKATLAVTTGLSAPFNNLA 345
           +  +A +A   G   PF  L+
Sbjct: 149 AQVRAAVAQGVGAVEPFAFLS 169

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score =  130 bits (329), Expect = 8e-32
 Identities = 28/147 (19%), Positives = 49/147 (33%)

Query: 48  DYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNL 107
           D    + +   A+R  P+    +  +A+A    GD           + L P   +A + L
Sbjct: 4   DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63

Query: 108 ASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT 167
                 + R  EAA   +QA    P        LG+ ++  G  + A + Y  A ++ P 
Sbjct: 64  GRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE 123

Query: 168 FAIAWSNLAGLFMESGDLNRALQYYKE 194
                + L        D         +
Sbjct: 124 EPYITAQLLNWRRRLCDWRALDVLSAQ 150

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score =  120 bits (303), Expect = 1e-28
 Identities = 26/189 (13%), Positives = 43/189 (22%), Gaps = 1/189 (0%)

Query: 12  SGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYG 71
           +    + L    +     P      L+L      + D        +  L L P   E   
Sbjct: 2   TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA 61

Query: 72  NMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALN 131
            +      +     A      A +  P        L  A    G+   AA    +A  L 
Sbjct: 62  RLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL 121

Query: 132 PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQY 191
           P      + L N  +       A       +R      +          E       L  
Sbjct: 122 PEEPYITAQLLNWRRRLCD-WRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLAC 180

Query: 192 YKEAVKLKP 200
            +   +   
Sbjct: 181 ARTRAQAIA 189

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score =  116 bits (293), Expect = 2e-27
 Identities = 35/237 (14%), Positives = 52/237 (21%), Gaps = 67/237 (28%)

Query: 182 SGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGN 241
           + D  R L   + AV+ +P    A+L L +    +G      M  QR +           
Sbjct: 2   TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA---------- 51

Query: 242 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP 301
                                    P   EA   LG       R  EA     Q     P
Sbjct: 52  -----------------------LHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAP 88

Query: 302 SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCY 361
            HP     LG+   +                                   G    A + Y
Sbjct: 89  EHPGIALWLGHALED----------------------------------AGQAEAAAAAY 114

Query: 362 NEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKD 418
               ++ P          N  + +           +          A    A   +D
Sbjct: 115 TRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSED 171

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 89.1 bits (221), Expect = 1e-18
 Identities = 23/143 (16%), Positives = 45/143 (31%), Gaps = 3/143 (2%)

Query: 2   HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
            + LA      G               +P   + +  LG + +    +       ++A  
Sbjct: 26  WLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASD 85

Query: 62  LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMR---KGRLN 118
             P        + +A ++ G  + A   Y  A +L P      + L +   R      L+
Sbjct: 86  AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALD 145

Query: 119 EAAQCCRQALALNPLLVDAHSNL 141
             +   R A+A     V+  + L
Sbjct: 146 VLSAQVRAAVAQGVGAVEPFAFL 168

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 44.5 bits (105), Expect = 2e-04
 Identities = 14/111 (12%), Positives = 22/111 (19%)

Query: 2   HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
              L    +    + +A        +  P      L LG         +   A    A +
Sbjct: 60  VARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ 119

Query: 62  LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM 112
           L P        + N  +   D                    A    A    
Sbjct: 120 LLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSE 170

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  408 bits (1050), Expect = e-135
 Identities = 160/385 (41%), Positives = 225/385 (58%), Gaps = 1/385 (0%)

Query: 3   MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRL 62
           M LAH+ Y++G ++ A  H   ++ + P  T  LLLL +I++Q    D     +  A++ 
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

Query: 63  EPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQ 122
            P  AE Y N+ N +KE+G +  AI +Y  A+ L+P+F D + NLA+A +  G +  A Q
Sbjct: 63  NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122

Query: 123 CCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMES 182
               AL  NP L    S+LGNL+KA G ++EA +CYL+A+  QP FA+AWSNL  +F   
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ 182

Query: 183 GDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGN 241
           G++  A+ ++++AV L P F DAY+NLGNV K   +   A+  Y RA+   PN A+  GN
Sbjct: 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242

Query: 242 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP 301
           LA  YYE+G  D+AI  Y++AI   P F +AY NL NALK+ G V EA  CYN  L L P
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302

Query: 302 SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCY 361
           +H  +L NL NI  E   +  A   Y+  L V    +A  +NLA + +QQG   +A+  Y
Sbjct: 303 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362

Query: 362 NEVLRIDPLAADGLVNRGNTYKEIG 386
            E +RI P  AD   N GNT KE+ 
Sbjct: 363 KEAIRISPTFADAYSNMGNTLKEMQ 387

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  393 bits (1013), Expect = e-130
 Identities = 134/383 (34%), Positives = 216/383 (56%), Gaps = 1/383 (0%)

Query: 70  YGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALA 129
              +A+   + GD + A R+ +      P+       L+S + +  RL+ +A     A+ 
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 130 LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRAL 189
            NPLL +A+SNLGN+ K +G +QEA   Y  ALR++P F   + NLA   + +GD+  A+
Sbjct: 62  QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAV 121

Query: 190 QYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYE 248
           Q Y  A++  P       +LGN+ KALG  +EA  CY +A++T+PN A+A+ NL   +  
Sbjct: 122 QAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA 181

Query: 249 RGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALT 308
           +G+  +AI ++++A+  DP FL+AY NLGN LK+    D A+  Y + LSL P+H     
Sbjct: 182 QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241

Query: 309 NLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRID 368
           NL  +Y E  ++  A   Y+  + +       + NLA   K++G+ A+A  CYN  LR+ 
Sbjct: 242 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301

Query: 369 PLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKS 428
           P  AD L N  N  +E G + +A++ Y +A+ + P  A AH+NLAS  +  G ++ A+  
Sbjct: 302 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 361

Query: 429 YKQALLLRPDFPEATCNLLHTLQ 451
           YK+A+ + P F +A  N+ +TL+
Sbjct: 362 YKEAIRISPTFADAYSNMGNTLK 384

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  322 bits (827), Expect = e-102
 Identities = 97/350 (27%), Positives = 169/350 (48%), Gaps = 1/350 (0%)

Query: 5   LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64
           L+   ++     ++   S    ++NPL  +    LG +Y +       I     ALRL+P
Sbjct: 39  LSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP 98

Query: 65  RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCC 124
            F + Y N+A A    GD++ A++ Y+ A++  P+     S+L +     GRL EA  C 
Sbjct: 99  DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACY 158

Query: 125 RQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD 184
            +A+   P    A SNLG +  AQG +  A   + +A+ + P F  A+ NL  +  E+  
Sbjct: 159 LKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARI 218

Query: 185 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLA 243
            +RA+  Y  A+ L P     + NL  VY   G+   AI  Y+RA++ +P+   A+ NLA
Sbjct: 219 FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLA 278

Query: 244 STYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 303
           +   E+G    A   Y  A+   P   ++ NNL N  ++ G ++EA++ Y + L + P  
Sbjct: 279 NALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF 338

Query: 304 PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGN 353
             A +NL ++  +   L  A  +YK  + ++   +  ++N+    K+  +
Sbjct: 339 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  307 bits (788), Expect = 1e-96
 Identities = 101/316 (31%), Positives = 162/316 (51%), Gaps = 1/316 (0%)

Query: 2   HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
           +  L +   + G  ++A+EH        P   D  + L A      D +  +     AL+
Sbjct: 70  YSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ 129

Query: 62  LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA 121
             P       ++ N  K  G ++ A   YL AIE +PNFA AWSNL   +  +G +  A 
Sbjct: 130 YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAI 189

Query: 122 QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFME 181
               +A+ L+P  +DA+ NLGN++K   +   A + YL AL + P  A+   NLA ++ E
Sbjct: 190 HHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE 249

Query: 182 SGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFG 240
            G ++ A+  Y+ A++L+P FPDAY NL N  K  G   EA  CY  A++  P  A +  
Sbjct: 250 QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLN 309

Query: 241 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300
           NLA+   E+G  + A+  Y++A+   P F  A++NL + L+  G++ EA+  Y + + + 
Sbjct: 310 NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369

Query: 301 PSHPQALTNLGNIYME 316
           P+   A +N+GN   E
Sbjct: 370 PTFADAYSNMGNTLKE 385

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  155 bits (395), Expect = 2e-41
 Identities = 62/183 (33%), Positives = 97/183 (53%)

Query: 2   HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
           ++ L + + ++  + +A+         +P        L  +YY+    D+ I     A+ 
Sbjct: 206 YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE 265

Query: 62  LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA 121
           L+P F + Y N+ANA KEKG +  A   Y  A+ L P  AD+ +NLA+    +G + EA 
Sbjct: 266 LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV 325

Query: 122 QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFME 181
           +  R+AL + P    AHSNL ++++ QG +QEA   Y EA+RI PTFA A+SN+     E
Sbjct: 326 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385

Query: 182 SGD 184
             D
Sbjct: 386 MQD 388

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 72.6 bits (179), Expect = 1e-13
 Identities = 12/73 (16%), Positives = 24/73 (32%)

Query: 374 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQAL 433
           G +   +   + G    A +  ++     P        L+S +     ++ +      A+
Sbjct: 1   GPMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI 60

Query: 434 LLRPDFPEATCNL 446
              P   EA  NL
Sbjct: 61  KQNPLLAEAYSNL 73

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score =  413 bits (1063), Expect = e-133
 Identities = 193/769 (25%), Positives = 311/769 (40%), Gaps = 85/769 (11%)

Query: 128 LALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNR 187
               P   D+ +NL N+ + QG ++EA   Y +AL + P FA A SNLA +  + G L  
Sbjct: 2   PGSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE 61

Query: 188 ALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTY 246
           AL +YKEA+++ PTF DAY N+GN  K +   Q A+ CY RA+Q  P  A A  NLAS +
Sbjct: 62  ALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIH 121

Query: 247 YERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQA 306
            + G    AI  Y+ A+   P F +AY NL + L+ V    +  +   + +S+     + 
Sbjct: 122 KDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEK 181

Query: 307 LTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLR 366
                       + P +  + KA                        + +       VL 
Sbjct: 182 NRLPSVHPHHSMLYPLSHGFRKAIAE--------------------RHGNLCLDKINVLH 221

Query: 367 IDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAI 426
             P      +   +    +G V+    ++  +                            
Sbjct: 222 KPPYEHPKDLKLSDGRLRVGYVSSDFGNHPTSH--------------------------- 254

Query: 427 KSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQPFH 486
                  L++        +         S +D      +V       +++S +P      
Sbjct: 255 -------LMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNGKAA 307

Query: 487 AIAYPIDPMLALEIS-RKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLRVGYVSSD 545
              +     + + ++     +   + A R A               G    L + Y+ +D
Sbjct: 308 DRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLG-----YPGTSGALFMDYIITD 362

Query: 546 FGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEH--------FVDVS 597
               P              E +    +     D        + +A          + +  
Sbjct: 363 QETSPAEV------AEQYSEKLAYMPHTFFIGDHANMFPHLKKKAVIDFKSNGHIYDNRI 416

Query: 598 AMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYL 657
            ++   +   ++      ++ +     G   +      +   ++    P  T A  +  +
Sbjct: 417 VLNGIDLKAFLDSLPDVKIVKMKCPDGGDNADS-----SNTALNMPVIPMNTIAEAVIEM 471

Query: 658 VTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFA 717
           +    +         S  L        +N+      +V        RS YGLPED  ++ 
Sbjct: 472 INRGQIQITINGFSISNGLA----TTQINNKAATGEEVPRTIIVTTRSQYGLPEDAIVYC 527

Query: 718 CFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDV 777
            FNQLYK+DP     W NIL+RVPNS LWLLRFPA GE  ++ YA   G+  ++IIF+ V
Sbjct: 528 NFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEPNIQQYAQNMGLPQNRIIFSPV 587

Query: 778 AMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGL 837
           A K+EH+RR  LAD+ LDTPLCN HTTG D+LWAG PM+T+P E +A+RVA S     G 
Sbjct: 588 APKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGC 647

Query: 838 GEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWV 886
             E+I  + +EYE+ AV L  D + L+ +  K+   R++ PLF+T ++ 
Sbjct: 648 -LELIAKNRQEYEDIAVKLGTDLEYLKKVRGKVWKQRISSPLFNTKQYT 695

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score =  179 bits (455), Expect = 3e-47
 Identities = 73/256 (28%), Positives = 118/256 (46%)

Query: 62  LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA 121
             P  A+   N+AN  +E+G+I+ A+R Y  A+E+ P FA A SNLAS   ++G+L EA 
Sbjct: 4   SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 63

Query: 122 QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFME 181
              ++A+ ++P   DA+SN+GN +K    VQ A  CY  A++I P FA A SNLA +  +
Sbjct: 64  MHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD 123

Query: 182 SGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGN 241
           SG++  A+  Y+ A+KLKP FPDAY NL +  + +    +     ++ V    + +    
Sbjct: 124 SGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNR 183

Query: 242 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP 301
           L S +            +++AI      L                 +      +      
Sbjct: 184 LPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYV 243

Query: 302 SHPQALTNLGNIYMEW 317
           S         ++    
Sbjct: 244 SSDFGNHPTSHLMQSI 259

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score =  157 bits (397), Expect = 7e-40
 Identities = 62/301 (20%), Positives = 121/301 (40%), Gaps = 6/301 (1%)

Query: 29  NPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIR 88
            P   D+L  L  I  +  + +  +    +AL + P FA  + N+A+  +++G +  A+ 
Sbjct: 5   CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 64

Query: 89  YYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQ 148
           +Y  AI + P FADA+SN+ +       +  A QC  +A+ +NP   DAHSNL ++ K  
Sbjct: 65  HYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDS 124

Query: 149 GLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLN 208
           G + EA + Y  AL+++P F  A+ NLA       D     +  K+ V +     +    
Sbjct: 125 GNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKN-R 183

Query: 209 LGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQ-----AI 263
           L +V+    M       +++A+  R   +    +   +    +    +           +
Sbjct: 184 LPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYV 243

Query: 264 GCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAA 323
             D       + + +           + CY        +    +    N +++ + +P  
Sbjct: 244 SSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCN 303

Query: 324 A 324
            
Sbjct: 304 G 304

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score =  131 bits (331), Expect = 9e-32
 Identities = 56/310 (18%), Positives = 100/310 (32%), Gaps = 8/310 (2%)

Query: 2   HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
              LA+   + G+ ++A+       E  P        L ++  Q       +   +EA+R
Sbjct: 12  LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 71

Query: 62  LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA 121
           + P FA+ Y NM N  KE  D+  A++ Y  AI++ P FADA SNLAS +   G + EA 
Sbjct: 72  ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAI 131

Query: 122 QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN------L 175
              R AL L P   DA+ NL + ++      +      + + I                 
Sbjct: 132 ASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHH 191

Query: 176 AGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
           + L+  S    +A+      + L            +            + Y  +     +
Sbjct: 192 SMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVSS-DFGNH 250

Query: 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 295
             +    +              Y                   N   D+ ++    +  ++
Sbjct: 251 PTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFR-VKVMAEANHFIDLSQIPCNGKAADR 309

Query: 296 CLSLQPSHPQ 305
                     
Sbjct: 310 IHQDGIHILV 319

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 62.5 bits (151), Expect = 5e-10
 Identities = 24/129 (18%), Positives = 50/129 (38%), Gaps = 1/129 (0%)

Query: 1   MHMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEAL 60
            +  + + + +    + AL+      + NP   D    L +I+    +    IA    AL
Sbjct: 79  AYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTAL 138

Query: 61  RLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEA 120
           +L+P F + Y N+A+  +   D           + +  +  +  + L S +     L   
Sbjct: 139 KLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEK-NRLPSVHPHHSMLYPL 197

Query: 121 AQCCRQALA 129
           +   R+A+A
Sbjct: 198 SHGFRKAIA 206

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  356 bits (915), Expect = e-114
 Identities = 59/426 (13%), Positives = 120/426 (28%), Gaps = 3/426 (0%)

Query: 14  SYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNM 73
           +++ AL  + +     P +   +         L      +    +A  L P+      + 
Sbjct: 55  AWRNAL--TGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASH 112

Query: 74  ANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPL 133
               +    +   +     A  L P    A ++          +        QA  L P 
Sbjct: 113 DGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPE 172

Query: 134 LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYK 193
            V A ++ G   +A   VQ       +A  + P   +A ++  G       + R L    
Sbjct: 173 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLC 232

Query: 194 EAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQA 252
           +A  L P    A  + G   +AL   Q  +    +A    P   +A  + +         
Sbjct: 233 QAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETV 292

Query: 253 DMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGN 312
              +    QA G  P+ + A  + G   + +  V   +    Q   L P    A+ +   
Sbjct: 293 QRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDG 352

Query: 313 IYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAA 372
                  +            +T        +     +        +    +   + P   
Sbjct: 353 GKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQV 412

Query: 373 DGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQA 432
             + +     + +  V   +    +A  + P    A A+          + A +     A
Sbjct: 413 VAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPA 472

Query: 433 LLLRPD 438
           L    +
Sbjct: 473 LAALTN 478

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  345 bits (888), Expect = e-110
 Identities = 71/456 (15%), Positives = 128/456 (28%), Gaps = 13/456 (2%)

Query: 7   HQMYKSGSYKQALEHSNSVYE---RNPLRTDNLLLLGAIYY-------QLHDYDMCIARN 56
           H  +   S  +ALE   +V       PL+ D   LL             +H +    A  
Sbjct: 4   HHHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWR--NALT 61

Query: 57  EEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGR 116
              L L P       +     +    +   +     A  L P    A ++          
Sbjct: 62  GAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALET 121

Query: 117 LNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLA 176
           +        QA  L P  V A ++     +A   VQ       +A  + P   +A ++  
Sbjct: 122 VQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNG 181

Query: 177 GLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN- 235
           G       + R L    +A  L P    A  + G   +AL   Q  +    +A    P  
Sbjct: 182 GGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 241

Query: 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 295
            +A  +              +    QA G  P+ + A  +     + +  V   +    Q
Sbjct: 242 VVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQ 301

Query: 296 CLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYA 355
              L P    A+ + G        +            +T        +     +      
Sbjct: 302 AHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQ 361

Query: 356 DAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASA 415
             +    +   + P     + + G   + +  V   +    +A  + P    A A+    
Sbjct: 362 RLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGG 421

Query: 416 YKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 451
            +    V+  +    QA  L P    A  +      
Sbjct: 422 KQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRP 457

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  186 bits (473), Expect = 7e-51
 Identities = 37/235 (15%), Positives = 67/235 (28%), Gaps = 2/235 (0%)

Query: 10  YKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAEC 69
               + ++ L      +   P +   +         L      +    +A  L P+    
Sbjct: 253 QALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVA 312

Query: 70  YGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALA 129
             +     +    +   +     A  L P    A ++          +        QA  
Sbjct: 313 IASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHG 372

Query: 130 LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRAL 189
           L P  V A ++ G   +A   VQ       +A  + P   +A ++  G       + R L
Sbjct: 373 LTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLL 432

Query: 190 QYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN--AIAFGNL 242
               +A  L P    A  + G    AL      +     A+    N   +A   L
Sbjct: 433 PVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLVALACL 487

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  151 bits (383), Expect = 4e-39
 Identities = 29/203 (14%), Positives = 55/203 (27%), Gaps = 1/203 (0%)

Query: 10  YKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAEC 69
               + ++ L      +   P +   +   G     L      +    +A  L P+    
Sbjct: 287 QALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA 346

Query: 70  YGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALA 129
             +     +    +   +     A  L P    A ++          +        QA  
Sbjct: 347 IASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHG 406

Query: 130 LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRAL 189
           L P  V A ++     +A   VQ       +A  + P   +A ++  G       +   L
Sbjct: 407 LTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQL 466

Query: 190 QYYKEAVKLKPT-FPDAYLNLGN 211
                A+         A   LG 
Sbjct: 467 SRPDPALAALTNDHLVALACLGG 489

>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A Length = 631

 Score =  355 bits (911), Expect = e-111
 Identities = 79/554 (14%), Positives = 162/554 (29%), Gaps = 42/554 (7%)

Query: 337 LSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYI 396
           +S       ++Y++      A S +      D +                 +  +    I
Sbjct: 94  ISDLGVQRFLVYQRWLALIFASSPFVNA---DHILQTYNREPNRKNSLEIHLDSSKSSLI 150

Query: 397 RAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSW 456
           +   +    +  + NL   +  S  + A++    Q+         A       LQ    W
Sbjct: 151 KFCILYLPESNVNLNLDVMWNISPELCASLCFALQSPRFIGT-STAFNKRATILQ----W 205

Query: 457 EDRDRMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFA 516
             R      ++ +       S +      H  +Y    +   ++ R        I     
Sbjct: 206 FPR-----HLDQLKNLNNIPSAISHDVYMHC-SY-DTSVNKHDVKRALNHV---IRRHIE 255

Query: 517 LPPFNHPVPIPIRLDGGLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSP 576
                    +        + + V  +      H +     +   +  +E+  +       
Sbjct: 256 SEYGWKDRDVAHIGYRNNKPVMVVLLEHFHSAHSIYRTHSTSM-IAAREHFYLIGLGSPS 314

Query: 577 NDGTEWRQRTQSEAEHFVDVSAMS----SDMIAKLINEDKIQILINLNGYTKGARNEIFA 632
            D     Q  Q   + F  V+  +     + I  +   +   I    +            
Sbjct: 315 VD-----QAGQEVFDEFHLVAGDNMKQKLEFIRSVCESNGAAIFYMPSIGMDMTTIFASN 369

Query: 633 MQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKN 692
            + APIQ   +G P TT + +I+Y++ ++          +SE L+ +P            
Sbjct: 370 TRLAPIQAIALGHPATTHSDFIEYVIVEDDYVG--SEECFSETLLRLPKDALPYVP---- 423

Query: 693 MDVLDPNCQPKRSDYGLPEDK--FIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRF 750
                    P++ DY L E+         +   K++P        I  R      +    
Sbjct: 424 -----SALAPEKVDYLLRENPEVVNIGIASTTMKLNPYFLEALKAIRDRAKVKVHFHFAL 478

Query: 751 PAA-GEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDIL 809
             + G          +    D       +   +++R     D+ ++           D++
Sbjct: 479 GQSNGITHPYVERFIKSYLGDSATAHPHSPYHQYLRILHNCDMMVNPFPFGNTNGIIDMV 538

Query: 810 WAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNK 869
             GL  +     ++   +   L    GL E +I N++ EY ERAV LA + Q+   L   
Sbjct: 539 TLGLVGVCKTGAEVHEHIDEGLFKRLGLPEWLIANTVDEYVERAVRLAENHQERLELRRY 598

Query: 870 LKSVRLTCPLFDTA 883
           +        LF   
Sbjct: 599 IIENNGLNTLFTGD 612

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  341 bits (875), Expect = e-106
 Identities = 72/474 (15%), Positives = 140/474 (29%), Gaps = 28/474 (5%)

Query: 5   LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64
           LA     +G Y +A          N   +    L      +L+D+   +    E      
Sbjct: 123 LAQVYCCTGDYARAKCLLTKEDLYNR-SSACRYLAAFCLVKLYDWQGALNLLGETNPFRK 181

Query: 65  RF----------------AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLA 108
                             A         +    + D A   Y  A+ +     +A+  L 
Sbjct: 182 DEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLV 241

Query: 109 SAYMRKGRLNEA---AQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ 165
           S ++                     +   + +   L     +          YL ++   
Sbjct: 242 SNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL 301

Query: 166 PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMC 225
              +      A            L    + +++ P   D Y          G   +  + 
Sbjct: 302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLI 361

Query: 226 YQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVG 284
               V   P  A+ +  +   Y    +   A  Y+ ++   DP+F  A+    ++    G
Sbjct: 362 SNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEG 421

Query: 285 RVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNL 344
             D+AI  Y     L          LG  +M+   +  A  Y +++ A+        N L
Sbjct: 422 EHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNEL 481

Query: 345 AVIYKQQGNYADAISCYNEVLRI-------DPLAADGLVNRGNTYKEIGRVTDAIQDYIR 397
            V+   + +   AI+ +   L +       +   A    N G+ Y+++     AI    +
Sbjct: 482 GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ 541

Query: 398 AITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 451
            + +    A  H  +A  Y        AI    ++L + P+   A+  L   L+
Sbjct: 542 GLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  314 bits (807), Expect = 9e-97
 Identities = 74/443 (16%), Positives = 139/443 (31%), Gaps = 29/443 (6%)

Query: 5   LAHQMYKSGSYKQALEHSNSVYE----------------RNPLRTDNLLLLGAIYYQLHD 48
            A  + K   ++ AL                           L      L G +Y  L +
Sbjct: 156 AAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN 215

Query: 49  YDMCIARNEEALRLEPRFAECYGNMAN----AWKEKGDIDLAIRYYLVAIELRPNFADAW 104
           +D      +EAL ++ +  E +  + +       E+ D+ L + Y     +    F  + 
Sbjct: 216 FDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYST-YSKEDAAFLRSL 274

Query: 105 SNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI 164
             L             A+    ++       D      + +  +    +  +   + L I
Sbjct: 275 YMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI 334

Query: 165 QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIM 224
            P     +        ESG+ N+      + V   P     +L +G  Y  +    EA  
Sbjct: 335 DPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARR 394

Query: 225 CYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDV 283
            + ++    P    A+   A ++   G+ D AI  Y  A          Y  LG     +
Sbjct: 395 YFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQL 454

Query: 284 GRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAP--- 340
           G +  A +      +L    P  L  LG +    + +  A ++++  L +     +    
Sbjct: 455 GNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP 514

Query: 341 ----FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYI 396
               + NL   Y++   Y  AI   N+ L +    A+        Y        AI    
Sbjct: 515 WAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLH 574

Query: 397 RAITIRPTMAEAHANLASAYKDS 419
            ++ I P    A   L  A +++
Sbjct: 575 ESLAISPNEIMASDLLKRALEEN 597

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  288 bits (738), Expect = 6e-87
 Identities = 69/469 (14%), Positives = 133/469 (28%), Gaps = 29/469 (6%)

Query: 5   LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNE------- 57
             H       YK A      V +      ++   L  +Y    DY               
Sbjct: 90  WRHDALMQQQYKCAAFVGEKVLDITG-NPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNR 148

Query: 58  ---------EALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLA 108
                      L     +      +      + D   A +  +    ++   A       
Sbjct: 149 SSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLE-ASMCYLRG 207

Query: 109 SAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLG--NLMKAQGLVQEAYSC-YLEALRIQ 165
             Y      + A +C ++AL ++    +A   L   +L+ A           Y    +  
Sbjct: 208 QVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKED 267

Query: 166 PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMC 225
             F  +   L        D  R  + Y  ++       D  L   +         + +  
Sbjct: 268 AAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAI 327

Query: 226 YQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVG 284
             + ++  P     +    ++ +E G+ +   L     +   P     +  +G     V 
Sbjct: 328 TTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVN 387

Query: 285 RVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNL 344
           ++ EA + +++  ++ P    A     + +        A S Y     +  G   P+  L
Sbjct: 388 KISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFL 447

Query: 345 AVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI--- 401
            + + Q GN   A         +       L   G        +  AI  +  A+ +   
Sbjct: 448 GMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK 507

Query: 402 ----RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
                   A   ANL  AY+     +AAI +  Q LLL  +       +
Sbjct: 508 TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAI 556

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  184 bits (468), Expect = 1e-49
 Identities = 52/377 (13%), Positives = 90/377 (23%), Gaps = 58/377 (15%)

Query: 79  EKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAH 138
            +     A       +++  N  DA+  LA  Y   G    A     +    N       
Sbjct: 96  MQQQYKCAAFVGEKVLDITGNPNDAF-WLAQVYCCTGDYARAKCLLTKEDLYNRSSA-CR 153

Query: 139 SNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL 198
                 +      Q A +   E    +                  D   A +   +   +
Sbjct: 154 YLAAFCLVKLYDWQGALNLLGETNPFR-----------------KDEKNANKLLMQDGGI 196

Query: 199 KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAI- 256
           K          G VY  L     A  CY+ A+        AF  L S +      +  + 
Sbjct: 197 KLE-ASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLV 255

Query: 257 --LYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIY 314
             L Y      D  FL +   L              + Y   ++        L    +  
Sbjct: 256 LKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTL 315

Query: 315 MEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADG 374
                                               +  + D ++   ++L IDP   D 
Sbjct: 316 ----------------------------------FVRSRFIDVLAITTKILEIDPYNLDV 341

Query: 375 LVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALL 434
                 +  E G            +   P  A     +   Y     +  A + + ++  
Sbjct: 342 YPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSST 401

Query: 435 LRPDFPEATCNLLHTLQ 451
           + P F  A     H+  
Sbjct: 402 MDPQFGPAWIGFAHSFA 418

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  129 bits (325), Expect = 3e-31
 Identities = 36/188 (19%), Positives = 65/188 (34%), Gaps = 7/188 (3%)

Query: 2   HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
            +  AH     G + QA+    +            L LG  + QL +  +     + +  
Sbjct: 410 WIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469

Query: 62  LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIEL-------RPNFADAWSNLASAYMRK 114
           L          +      K D+  AI ++  A+ L          +A  W+NL  AY + 
Sbjct: 470 LFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL 529

Query: 115 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 174
              + A     Q L L+    + H+ +  +   + +   A +   E+L I P   +A   
Sbjct: 530 KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDL 589

Query: 175 LAGLFMES 182
           L     E+
Sbjct: 590 LKRALEEN 597

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  308 bits (791), Expect = 2e-97
 Identities = 61/390 (15%), Positives = 125/390 (32%), Gaps = 46/390 (11%)

Query: 67  AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQ 126
            E +  +       G +  A+  +  A++  P+   A+   A+ ++  G+   A     +
Sbjct: 3   VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62

Query: 127 ALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLN 186
            +AL      A    G+L+  QG + EA   + + L+  P+        + L        
Sbjct: 63  VIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQL-------- 114

Query: 187 RALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLAST 245
                      +K        +             AI    + ++     A      A  
Sbjct: 115 -----------VKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAEC 163

Query: 246 YYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQ 305
           + + G+   AI   K A        EA+  +      +G  + ++    +CL L   H +
Sbjct: 164 FIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKR 223

Query: 306 ALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVL 365
              +   +     ++ +A    +                       G Y DA S Y  V+
Sbjct: 224 CFAHYKQVKKLNKLIESAEELIR----------------------DGRYTDATSKYESVM 261

Query: 366 RIDPLAADGLV----NRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGH 421
           + +P  A+  V       + + +  +  +AI+     + + P    A  + A AY     
Sbjct: 262 KTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEM 321

Query: 422 VEAAIKSYKQALLLRPDFPEATCNLLHTLQ 451
            + AI+ Y+ A     +  +    L    +
Sbjct: 322 YDEAIQDYEAAQEHNENDQQIREGLEKAQR 351

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  252 bits (645), Expect = 2e-76
 Identities = 45/347 (12%), Positives = 104/347 (29%), Gaps = 32/347 (9%)

Query: 2   HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
           H+ L  ++  +G    AL   ++  + +P           ++  +      +    + + 
Sbjct: 6   HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIA 65

Query: 62  LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNL-------------- 107
           L+  F        +   ++G +D A   +   ++  P+  +                   
Sbjct: 66  LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRS 125

Query: 108 -ASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP 166
            A           A     + L +     +           +G  ++A S    A +++ 
Sbjct: 126 QALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKS 185

Query: 167 TFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNL------------GNVYK 214
               A+  ++ L+ + GD   +L   +E +KL       + +                  
Sbjct: 186 DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELI 245

Query: 215 ALGMPQEAIMCYQRAVQTRPN-----AIAFGNLASTYYERGQADMAILYYKQAIGCDPRF 269
             G   +A   Y+  ++T P+       +   +   + +  +   AI    + +  +P  
Sbjct: 246 RDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDN 305

Query: 270 LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYME 316
           + A  +   A       DEAIQ Y        +  Q    L      
Sbjct: 306 VNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  179 bits (457), Expect = 5e-50
 Identities = 38/227 (16%), Positives = 75/227 (33%), Gaps = 15/227 (6%)

Query: 235 NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 294
           +      L       GQ   A+  +  A+  DP    AY         +G+   A+    
Sbjct: 2   DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 61

Query: 295 QCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYK----- 349
           + ++L+     A    G++ ++   L  A   +K  L             + + K     
Sbjct: 62  KVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQ 121

Query: 350 ----------QQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAI 399
                        +Y  AI+  +++L +    A+    R   + + G    AI D   A 
Sbjct: 122 RLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAAS 181

Query: 400 TIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
            ++    EA   +++ Y   G  E ++   ++ L L  D      + 
Sbjct: 182 KLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHY 228

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  166 bits (422), Expect = 2e-45
 Identities = 34/236 (14%), Positives = 79/236 (33%), Gaps = 16/236 (6%)

Query: 2   HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
             + A   +    Y  A+   + + E      +   L    + +  +    I+  + A +
Sbjct: 123 LRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASK 182

Query: 62  LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNL------------AS 109
           L+    E +  ++  + + GD +L++      ++L  +    +++             A 
Sbjct: 183 LKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAE 242

Query: 110 AYMRKGRLNEAAQCCRQALALNP----LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ 165
             +R GR  +A       +   P      V +   + +         EA     E L+++
Sbjct: 243 ELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME 302

Query: 166 PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQE 221
           P    A  + A  ++     + A+Q Y+ A +           L    + L   Q+
Sbjct: 303 PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQK 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  106 bits (268), Expect = 4e-25
 Identities = 24/160 (15%), Positives = 48/160 (30%), Gaps = 15/160 (9%)

Query: 302 SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCY 361
           +  +    LG   +    L  A S + A +         +   A ++   G    A+   
Sbjct: 1   ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDL 60

Query: 362 NEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANL--------- 412
            +V+ +        + RG+   + G++ +A  D+ + +   P+  E              
Sbjct: 61  TKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEM 120

Query: 413 ------ASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
                 A    D     AAI    + L +     E     
Sbjct: 121 QRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELR 160

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  309 bits (794), Expect = 1e-95
 Identities = 71/471 (15%), Positives = 157/471 (33%), Gaps = 38/471 (8%)

Query: 10  YKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAEC 69
           + + ++ +A+++     E +P        + A Y    D +  I    +AL ++P  ++ 
Sbjct: 36  FTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKA 95

Query: 70  YGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALA 129
               A+A +  G+   A+      + L  +F  A        + +    +A +   + L+
Sbjct: 96  LLRRASANESLGNFTDAMFDL-SVLSLNGDFDGASIE---PMLERNLNKQAMKVLNENLS 151

Query: 130 --------LNPLLVDAHSNLGNLMKA--------QGLVQEAYSCYLEALRIQPTFAIAWS 173
                   + P      S  G                   AY+   +AL+   +      
Sbjct: 152 KDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGY 211

Query: 174 NLA-GLFMES-GDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 231
            +A  L  +S    +  L        L+     A    G  +       +A +  Q ++ 
Sbjct: 212 LVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESIN 271

Query: 232 TRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQ 291
             P   ++  LA T  ++  +     ++++A+  +P +   Y + G     +     A +
Sbjct: 272 LHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKE 331

Query: 292 CYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQ 351
            + +  SL P +      L  +  +      + +++  T      L       A I   +
Sbjct: 332 DFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDR 391

Query: 352 GNYADAISCYNEVLRIDPLAADGLVNRGN----------------TYKEIGRVTDAIQDY 395
           G++  AI  Y+   R++ +     V  G                 T  +  +   AI+  
Sbjct: 392 GDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLL 451

Query: 396 IRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
            +A  + P   +A   LA        ++ AI+ ++ + +L     E     
Sbjct: 452 TKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQAT 502

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  294 bits (754), Expect = 8e-90
 Identities = 73/459 (15%), Positives = 146/459 (31%), Gaps = 56/459 (12%)

Query: 13  GSYKQALEHSNSVYERNPLRTDN----LLLLGAIYYQLHDYDMCIARNEEALRLEPRFAE 68
           GS+         +   +P +       L   G  ++   +++  I   + A+ L+P    
Sbjct: 1   GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60

Query: 69  CYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQAL 128
            Y N++  +   GD++  I +   A+E++P+ + A    ASA    G   +A       L
Sbjct: 61  FYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDL-SVL 119

Query: 129 ALNPLLVDAHS----NLGNLMKAQGLVQEAYS-CYLEALRIQPTFAIAWSNLA------- 176
           +LN     A            +A  ++ E  S       ++ P+     S          
Sbjct: 120 SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179

Query: 177 -GLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVY--KALGMPQEAIMCYQRAVQTR 233
                 S + + A     +A++   +  D    + N    K+  M    +         R
Sbjct: 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLR 239

Query: 234 PN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQC 292
            N A+A       ++ +     A +  +++I   P    +Y  L   L D     E  + 
Sbjct: 240 ENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTP-NSYIFLALTLADKENSQEFFKF 298

Query: 293 YNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQG 352
           + + + L P +P    + G +Y                                      
Sbjct: 299 FQKAVDLNPEYPPTYYHRGQMYFI----------------------------------LQ 324

Query: 353 NYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANL 412
           +Y +A   + +   ++P      +       + G+ T++   +       PT+ E     
Sbjct: 325 DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFF 384

Query: 413 ASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 451
           A    D G  + AIK Y  A  L     +    +   + 
Sbjct: 385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIG 423

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  292 bits (750), Expect = 3e-89
 Identities = 64/482 (13%), Positives = 152/482 (31%), Gaps = 70/482 (14%)

Query: 10  YKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIA--------------- 54
             +G  ++ +E +    E  P  +  LL   +    L ++   +                
Sbjct: 70  ISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGAS 129

Query: 55  --------RNEEALRLEPR-FAECYGNMANAWKEKGDI---------------------- 83
                    N++A+++     ++  G  +        +                      
Sbjct: 130 IEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNY 189

Query: 84  DLAIRYYLVAIELRPNFADAWSNLASAYMRK--GRLNEAAQCCRQALALNPLLVDAHSNL 141
           D A      A++   +  D    +A+  + K     +           L      A    
Sbjct: 190 DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYT 249

Query: 142 GNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPT 201
           G     +  + +A     E++ + PT   ++  LA    +  +     +++++AV L P 
Sbjct: 250 GIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPE 308

Query: 202 FPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYK 260
           +P  Y + G +Y  L   + A   +Q+A    P     +  LA   Y++G+   +  ++ 
Sbjct: 309 YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFN 368

Query: 261 QAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNML 320
           +     P   E        L D G  D AI+ Y+    L+    +    +G +  +  +L
Sbjct: 369 ETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATIL 428

Query: 321 PAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGN 380
                             A  ++       +  +  AI    +   +DP +    +    
Sbjct: 429 ------------------ARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQ 470

Query: 381 TYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFP 440
              ++ ++ +AI+ +  +  +  TM E        + ++  ++  +++            
Sbjct: 471 LKLQMEKIDEAIELFEDSAILARTMDEKLQAT--TFAEAAKIQKRLRADPIISAKMELTL 528

Query: 441 EA 442
             
Sbjct: 529 AR 530

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  252 bits (646), Expect = 2e-74
 Identities = 60/352 (17%), Positives = 119/352 (33%), Gaps = 27/352 (7%)

Query: 1   MHMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEAL 60
             +A       +  Y   L  +             L   G  ++  ++        +E++
Sbjct: 211 YLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESI 270

Query: 61  RLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEA 120
            L P     Y  +A    +K +     +++  A++L P +   + +    Y        A
Sbjct: 271 NLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNA 329

Query: 121 AQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFM 180
            +  ++A +LNP  V  +  L  L+  QG   E+ + + E     PT     +  A +  
Sbjct: 330 KEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILT 389

Query: 181 ESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFG 240
           + GD + A++ Y  A +L+      ++ +G +     +                      
Sbjct: 390 DRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQS----------------- 432

Query: 241 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300
           +   T  +  + + AI    +A   DPR  +A   L      + ++DEAI+ +     L 
Sbjct: 433 SQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492

Query: 301 PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQG 352
            +  + L               AA   K  L     +SA        Y+ +G
Sbjct: 493 RTMDEKLQATT--------FAEAAKIQKR-LRADPIISAKMELTLARYRAKG 535

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  251 bits (644), Expect = 4e-74
 Identities = 61/398 (15%), Positives = 113/398 (28%), Gaps = 63/398 (15%)

Query: 10  YKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYY--QLHDYDMCIARNEEALRLEPRFA 67
             S +Y  A    +   +R    TD   L+           Y   ++ N     L    A
Sbjct: 184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAA 243

Query: 68  ECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQA 127
                       K ++  A      +I L P   +++  LA     K    E  +  ++A
Sbjct: 244 LALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKA 302

Query: 128 LALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNR 187
           + LNP     + + G +       + A   + +A  + P     +  LA L  + G    
Sbjct: 303 VDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTE 362

Query: 188 ALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLAS-- 244
           +  ++ E     PT P+       +    G    AI  Y  A +           +    
Sbjct: 363 SEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLI 422

Query: 245 --------------TYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAI 290
                         T  +  + + AI    +A   DPR  +A   L      + ++DEAI
Sbjct: 423 GKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAI 482

Query: 291 QCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQ 350
           + +     L  +  + L                                        + +
Sbjct: 483 ELFEDSAILARTMDEKLQATT------------------------------------FAE 506

Query: 351 QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRV 388
                  +       R DP+ +  +      Y+  G +
Sbjct: 507 AAKIQKRL-------RADPIISAKMELTLARYRAKGML 537

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  118 bits (297), Expect = 7e-28
 Identities = 34/217 (15%), Positives = 67/217 (30%), Gaps = 27/217 (12%)

Query: 2   HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
           ++ LA  +YK G + ++    N    + P   +       I     D+D  I + + A R
Sbjct: 347 YIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406

Query: 62  LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA 121
           LE    + +  +     +                         S+     + + + N A 
Sbjct: 407 LEEVQEKIHVGIGPLIGK------------------ATILARQSSQDPTQLDEEKFNAAI 448

Query: 122 QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFME 181
           +   +A  L+P    A   L  L      + EA   + ++  +  T           F E
Sbjct: 449 KLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATT--FAE 506

Query: 182 SGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGM 218
           +          ++ ++  P            Y+A GM
Sbjct: 507 AA-------KIQKRLRADPIISAKMELTLARYRAKGM 536

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  306 bits (786), Expect = 1e-94
 Identities = 73/485 (15%), Positives = 146/485 (30%), Gaps = 44/485 (9%)

Query: 2   HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLL--LGAIYYQLHDYDMCIARNEEA 59
                +Q +++  Y  A+++ N   E      D +    L A Y  + D    +  + +A
Sbjct: 9   LKDKGNQFFRNKKYDDAIKYYNWALELKE---DPVFYSNLSACYVSVGDLKKVVEMSTKA 65

Query: 60  LRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADA----WSNLASAYMRKG 115
           L L+P +++     A+A +  G    A+      + L  +F DA                
Sbjct: 66  LELKPDYSKVLLRRASANEGLGKFADAMFDL-SVLSLNGDFNDASIEPMLERNLNKQAMS 124

Query: 116 RLNEAAQCCRQALALNPLLVDAHSNLGNLMK-------------AQGLVQEAYSCYLEAL 162
           +L E       A A    L    +      +                  +  ++ Y E+ 
Sbjct: 125 KLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESN 184

Query: 163 RIQPTFAIAWSNLAGLFMES------------GDLNRALQYYKEAVKLKPTFPDAYLNLG 210
                     SNL     ES                  L    E  KLK     +  + G
Sbjct: 185 EADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244

Query: 211 NVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFL 270
                   P  A    ++A++  P   ++  +A    +R  +     Y+ +A+  D    
Sbjct: 245 IFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNS 304

Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 330
             Y + G     +   D+A + +++   L P +      L  +    N      + +   
Sbjct: 305 SVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEA 364

Query: 331 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTY-------- 382
                      N  A I   + ++  A+  Y+  + ++       V              
Sbjct: 365 KRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTR 424

Query: 383 -KEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE 441
              +    +A     +A  + P   +A   LA        ++ AI  ++++  L     E
Sbjct: 425 NPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEE 484

Query: 442 ATCNL 446
               +
Sbjct: 485 KLQAI 489

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  261 bits (669), Expect = 6e-78
 Identities = 59/456 (12%), Positives = 131/456 (28%), Gaps = 59/456 (12%)

Query: 3   MALAHQMYKSGSYKQALEHSNSV---YERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEA 59
            A A+     G +  A+   + +    + N    + +L        +          + A
Sbjct: 79  RASAN--EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTA 136

Query: 60  LRLEPRFAECYGNMA-------------NAWKEKGDIDLAIRYYLVAIELRPNFADAWSN 106
                  +                     ++      +L    Y  + E      +  SN
Sbjct: 137 TATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSN 196

Query: 107 LASAYMRK------------GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEA 154
           L                       E      +   L   L  +  + G     +     A
Sbjct: 197 LYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGA 256

Query: 155 YSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYK 214
           +    +A+ + P    ++  +A +  +  D      Y+ +A+KL       Y + G +  
Sbjct: 257 HEDIKKAIELFPRVN-SYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNF 315

Query: 215 ALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAY 273
            L    +A   + +A +  P     +  LA   Y   + D     + +A    P   E  
Sbjct: 316 ILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVP 375

Query: 274 NNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAV 333
           N     L D    D+A++ Y+  + L+         +  +  +  +L             
Sbjct: 376 NFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTR----------- 424

Query: 334 TTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQ 393
                              N+ +A +   +  ++DP +    +       +   + +AI 
Sbjct: 425 --------------NPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAIT 470

Query: 394 DYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSY 429
            +  +  +  TM E    +   + ++  V+  I+S 
Sbjct: 471 LFEESADLARTMEEKLQAI--TFAEAAKVQQRIRSD 504

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  254 bits (651), Expect = 2e-75
 Identities = 67/452 (14%), Positives = 124/452 (27%), Gaps = 67/452 (14%)

Query: 29  NPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIR 88
                  L   G  +++   YD  I     AL L+      Y N++  +   GD+   + 
Sbjct: 2   KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVE 60

Query: 89  YYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHS----NLGNL 144
               A+EL+P+++      ASA    G+  +A       L+LN    DA           
Sbjct: 61  MSTKALELKPDYSKVLLRRASANEGLGKFADAMFDL-SVLSLNGDFNDASIEPMLERNLN 119

Query: 145 MKAQGLVQEAYSCYLEALRIQPTF-------------AIAWSNLAGLFMESGDLNRALQY 191
            +A   ++E +     A                     +        F            
Sbjct: 120 KQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFAN 179

Query: 192 YKEAVKLKPTFPDAYLNLGNVY------------KALGMPQEAIMCYQRAVQTRPN-AIA 238
           Y E+ +      +   NL                KA  + +E +       + +   AI+
Sbjct: 180 YDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAIS 239

Query: 239 FGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLS 298
             +     + +     A    K+AI   PR   +Y  +   + D     E    +++ L 
Sbjct: 240 LEHTGIFKFLKNDPLGAHEDIKKAIELFPRV-NSYIYMALIMADRNDSTEYYNYFDKALK 298

Query: 299 LQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAI 358
           L  ++     + G +                                       NY  A 
Sbjct: 299 LDSNNSSVYYHRGQMNFI----------------------------------LQNYDQAG 324

Query: 359 SCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKD 418
             +++   +DP      +          +  D    +  A    P   E     A    D
Sbjct: 325 KDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTD 384

Query: 419 SGHVEAAIKSYKQALLLRPDFPEATCNLLHTL 450
               + A+K Y  A+ L          +   +
Sbjct: 385 KNDFDKALKQYDLAIELENKLDGIYVGIAPLV 416

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  317 bits (813), Expect = 1e-93
 Identities = 62/440 (14%), Positives = 124/440 (28%), Gaps = 4/440 (0%)

Query: 13  GSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGN 72
            + + AL  + +     P +   +         L      +    +A  L P       +
Sbjct: 174 HASRNAL--TGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIAS 231

Query: 73  MANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNP 132
                +    +   +     A  L P+   A ++          +        QA  L P
Sbjct: 232 HDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTP 291

Query: 133 LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYY 192
             V A ++ G   +A   VQ       +A  + P   +A ++  G       + R L   
Sbjct: 292 DQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVL 351

Query: 193 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQ 251
            +A  L P    A  + G   +AL   Q  +    +A    P+  +A  +          
Sbjct: 352 CQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNG-GKQALET 410

Query: 252 ADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLG 311
               +    QA G  P  + A  +     + +  V   +    Q   L P+   A+ +  
Sbjct: 411 VQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHD 470

Query: 312 NIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA 371
                   +            +T        +     +        +    +   + P  
Sbjct: 471 GGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQ 530

Query: 372 ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 431
              + + G   + +  V   +    +A  + P    A A+     +    V+  +    Q
Sbjct: 531 VVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQ 590

Query: 432 ALLLRPDFPEATCNLLHTLQ 451
           A  L      A  + +   Q
Sbjct: 591 AHGLTQVQVVAIASNIGGKQ 610

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  305 bits (782), Expect = 2e-89
 Identities = 58/440 (13%), Positives = 119/440 (27%), Gaps = 2/440 (0%)

Query: 13  GSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGN 72
            + ++ L      +   P +   +         L      +    +A  L P       +
Sbjct: 308 ETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 367

Query: 73  MANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNP 132
                +    +   +     A  L P+   A ++          +        QA  L P
Sbjct: 368 NGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQ-ALETVQRLLPVLCQAHGLTP 426

Query: 133 LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYY 192
             V A ++     +A   VQ       +   + P   +A ++  G       + + L   
Sbjct: 427 DQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVL 486

Query: 193 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQ 251
            +A  L P    A  +     +AL   Q  +    +A    P+  +A  +          
Sbjct: 487 CQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALET 546

Query: 252 ADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLG 311
               +    QA G  P  + A  + G   + +  V   +    Q   L      A+ +  
Sbjct: 547 VQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNI 606

Query: 312 NIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA 371
                   +            +T        +     +        +    +   + P  
Sbjct: 607 GGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQ 666

Query: 372 ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 431
              + + G   + +  V   +    +A  +      A A+     +    V+  +    Q
Sbjct: 667 VVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQ 726

Query: 432 ALLLRPDFPEATCNLLHTLQ 451
           A  L PD   A  +     Q
Sbjct: 727 AHGLTPDQVVAIASNGGGKQ 746

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  300 bits (768), Expect = 2e-87
 Identities = 59/451 (13%), Positives = 121/451 (26%), Gaps = 2/451 (0%)

Query: 2   HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
             +         + ++ L      +   P +   +         L      +    +A  
Sbjct: 195 IASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHG 254

Query: 62  LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA 121
           L P       +     +    +   +     A  L P+   A ++          +    
Sbjct: 255 LPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLL 314

Query: 122 QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFME 181
               QA  L P  V A ++     +A   VQ       +A  + P   +A ++  G    
Sbjct: 315 PVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQA 374

Query: 182 SGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFG 240
              + R L    +A  L P    A  + G   +AL   Q  +    +A    P+  +A  
Sbjct: 375 LETVQRLLPVLCQAHGLTPDQVVAIASNGGK-QALETVQRLLPVLCQAHGLTPDQVVAIA 433

Query: 241 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300
           +              +    Q  G  P  + A  +     + +  V + +    Q   L 
Sbjct: 434 SHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLT 493

Query: 301 PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISC 360
           P    A+ +          +            +T        +     +        +  
Sbjct: 494 PDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPV 553

Query: 361 YNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 420
             +   + P     + + G   + +  V   +    +A  +      A A+     +   
Sbjct: 554 LCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALE 613

Query: 421 HVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 451
            V+  +    QA  L P    A  +     Q
Sbjct: 614 TVQRLLPVLCQAHGLTPAQVVAIASHDGGKQ 644

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  288 bits (739), Expect = 2e-83
 Identities = 59/451 (13%), Positives = 120/451 (26%), Gaps = 2/451 (0%)

Query: 2   HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
             +         + ++ L      +   P +   +   G     L      +    +A  
Sbjct: 365 IASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQ-ALETVQRLLPVLCQAHG 423

Query: 62  LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA 121
           L P       +     +    +   +        L P    A ++          + +  
Sbjct: 424 LTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLL 483

Query: 122 QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFME 181
               QA  L P  V A ++     +A   VQ       +A  + P   +A ++  G    
Sbjct: 484 PVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQA 543

Query: 182 SGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFG 240
              + R L    +A  L P    A  + G   +AL   Q  +    +A        +A  
Sbjct: 544 LETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIA 603

Query: 241 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300
           +              +    QA G  P  + A  +     + +  V   +    Q   L 
Sbjct: 604 SNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 663

Query: 301 PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISC 360
           P    A+ + G        +            +T        +     +        +  
Sbjct: 664 PDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPV 723

Query: 361 YNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 420
             +   + P     + + G   + +  V   +    +A  + P    A A+     +   
Sbjct: 724 LCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALE 783

Query: 421 HVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 451
            V+  +    Q   L      A  + +   Q
Sbjct: 784 TVQRLLPVLCQDHGLTLAQVVAIASNIGGKQ 814

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  288 bits (737), Expect = 3e-83
 Identities = 58/451 (12%), Positives = 121/451 (26%), Gaps = 2/451 (0%)

Query: 2   HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
             +         + ++ L      +   P +   +   G     L      +    +A  
Sbjct: 331 IASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHG 390

Query: 62  LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA 121
           L P       +     +    +   +     A  L P+   A ++          +    
Sbjct: 391 LTPDQVVAIASNGGK-QALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLL 449

Query: 122 QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFME 181
               Q   L P  V A ++     +A   VQ+      +A  + P   +A ++  G    
Sbjct: 450 PVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQA 509

Query: 182 SGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFG 240
              + R L    +A  L P    A  + G   +AL   Q  +    +A    P   +A  
Sbjct: 510 LATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIA 569

Query: 241 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300
           +              +    QA G     + A  +     + +  V   +    Q   L 
Sbjct: 570 SNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLT 629

Query: 301 PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISC 360
           P+   A+ +          +            +T        +     +        +  
Sbjct: 630 PAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPV 689

Query: 361 YNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 420
             +   +       + +     + +  V   +    +A  + P    A A+     +   
Sbjct: 690 LCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALE 749

Query: 421 HVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 451
            V+  +    QA  L P    A  + +   Q
Sbjct: 750 TVQRLLPVLCQAHGLTPAQVVAIASNIGGKQ 780

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  287 bits (736), Expect = 5e-83
 Identities = 63/436 (14%), Positives = 120/436 (27%), Gaps = 2/436 (0%)

Query: 17  QALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANA 76
            A E      + +  +   +   G +      +    A     L L P       +    
Sbjct: 142 DAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGG 201

Query: 77  WKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVD 136
            +    +   +     A  L P    A ++          +        QA  L P  V 
Sbjct: 202 KQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVV 261

Query: 137 AHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAV 196
           A ++     +A   VQ       +A  + P   +A ++  G       + R L    +A 
Sbjct: 262 AIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAH 321

Query: 197 KLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMA 255
            L P    A  +     +AL   Q  +    +A    P+  +A  +              
Sbjct: 322 GLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRL 381

Query: 256 ILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM 315
           +    QA G  P  + A  + G   + +  V   +    Q   L P    A+ +      
Sbjct: 382 LPVLCQAHGLTPDQVVAIASNGGK-QALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQ 440

Query: 316 EWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGL 375
               +         T  +T        +     +        +    +   + P     +
Sbjct: 441 ALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAI 500

Query: 376 VNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLL 435
            +     + +  V   +    +A  + P    A A+     +    V+  +    QA  L
Sbjct: 501 ASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGL 560

Query: 436 RPDFPEATCNLLHTLQ 451
            PD   A  +     Q
Sbjct: 561 TPDQVVAIASNGGGKQ 576

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  276 bits (707), Expect = 4e-79
 Identities = 56/440 (12%), Positives = 116/440 (26%), Gaps = 1/440 (0%)

Query: 13  GSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGN 72
            + ++ L      +   P +   +         L      +    +   L P       +
Sbjct: 409 ETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIAS 468

Query: 73  MANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNP 132
                +    +   +     A  L P+   A ++          +        QA  L P
Sbjct: 469 HDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTP 528

Query: 133 LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYY 192
             V A ++ G   +A   VQ       +A  + P   +A ++  G       + R L   
Sbjct: 529 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVL 588

Query: 193 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQ 251
            +A  L      A  +     +AL   Q  +    +A    P   +A  +          
Sbjct: 589 CQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALET 648

Query: 252 ADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLG 311
               +    QA G  P  + A  + G   + +  V   +    Q   L      A+ +  
Sbjct: 649 VQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNN 708

Query: 312 NIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA 371
                   +            +T        +     +        +    +   + P  
Sbjct: 709 GGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQ 768

Query: 372 ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 431
              + +     + +  V   +    +   +      A A+     +    V+  +    Q
Sbjct: 769 VVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQ 828

Query: 432 ALLLRPDFPEATCNLLHTLQ 451
           A  L  D   A  + +   Q
Sbjct: 829 AHGLTQDQVVAIASNIGGKQ 848

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  263 bits (672), Expect = 2e-74
 Identities = 56/442 (12%), Positives = 116/442 (26%), Gaps = 1/442 (0%)

Query: 2   HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
             +         + +Q L      +   P +   +         L      +    +A  
Sbjct: 466 IASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHG 525

Query: 62  LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA 121
           L P       +     +    +   +     A  L P+   A ++          +    
Sbjct: 526 LTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLL 585

Query: 122 QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFME 181
               QA  L  + V A ++     +A   VQ       +A  + P   +A ++  G    
Sbjct: 586 PVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQA 645

Query: 182 SGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFG 240
              + R L    +A  L P    A  + G   +AL   Q  +    +A        +A  
Sbjct: 646 LETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIA 705

Query: 241 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300
           +              +    QA G  P  + A  + G   + +  V   +    Q   L 
Sbjct: 706 SNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 765

Query: 301 PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISC 360
           P+   A+ +          +            +T        +     +        +  
Sbjct: 766 PAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPV 825

Query: 361 YNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 420
             +   +       + +     + +  V   +    +   + P    A A+     +   
Sbjct: 826 LCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALE 885

Query: 421 HVEAAIKSYKQALLLRPDFPEA 442
            V+  +    Q   L  D   A
Sbjct: 886 TVQRLLPVLCQDHGLTLDQVVA 907

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  257 bits (658), Expect = 2e-72
 Identities = 57/440 (12%), Positives = 118/440 (26%), Gaps = 1/440 (0%)

Query: 13  GSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGN 72
            + ++ L      +   P +   +         L      +    +A  L P       +
Sbjct: 443 ETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIAS 502

Query: 73  MANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNP 132
                +    +   +     A  L P+   A ++          +        QA  L P
Sbjct: 503 NIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 562

Query: 133 LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYY 192
             V A ++ G   +A   VQ       +A  +     +A ++  G       + R L   
Sbjct: 563 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVL 622

Query: 193 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQ 251
            +A  L P    A  +     +AL   Q  +    +A    P+  +A  +          
Sbjct: 623 CQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALET 682

Query: 252 ADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLG 311
               +    QA G     + A  +     + +  V   +    Q   L P    A+ + G
Sbjct: 683 VQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNG 742

Query: 312 NIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA 371
                   +            +T        +     +        +    +   +    
Sbjct: 743 GGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQ 802

Query: 372 ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 431
              + +     + +  V   +    +A  +      A A+     +    V+  +    Q
Sbjct: 803 VVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQ 862

Query: 432 ALLLRPDFPEATCNLLHTLQ 451
              L PD   A  + +   Q
Sbjct: 863 DHGLTPDQVVAIASNIGGKQ 882

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  252 bits (644), Expect = 1e-70
 Identities = 58/413 (14%), Positives = 112/413 (27%), Gaps = 4/413 (0%)

Query: 40  GAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPN 99
            A+      Y   I    EA   +        + A A   +  +  A       ++L   
Sbjct: 99  AALGTVAVTYQHIITALPEATHEDIVGVGKQWSGARA--LEALLTDAGELRGPPLQLDTG 156

Query: 100 FADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYL 159
                +        +             L L P  V A ++     +A   VQ       
Sbjct: 157 QLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLC 216

Query: 160 EALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMP 219
           +A  + P   +A ++  G       + R L    +A  L P    A  +     +AL   
Sbjct: 217 QAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETV 276

Query: 220 QEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGN 278
           Q  +    +A    P+  +A  +              +    QA G  P  + A  +   
Sbjct: 277 QRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDG 336

Query: 279 ALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLS 338
             + +  V   +    Q   L P    A+ + G        +            +T    
Sbjct: 337 GKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQV 396

Query: 339 APFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRA 398
               +     +        +    +   + P     + +     + +  V   +    + 
Sbjct: 397 VAIASNGGK-QALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQT 455

Query: 399 ITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 451
             + P    A A+     +    V+  +    QA  L PD   A  + +   Q
Sbjct: 456 HGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQ 508

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  237 bits (606), Expect = 1e-65
 Identities = 55/451 (12%), Positives = 116/451 (25%), Gaps = 2/451 (0%)

Query: 2   HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
             +         + ++ L      +   P +   +   G     L      +    +A  
Sbjct: 500 IASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHG 559

Query: 62  LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA 121
           L P       +     +    +   +     A  L      A ++          +    
Sbjct: 560 LTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLL 619

Query: 122 QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFME 181
               QA  L P  V A ++     +A   VQ       +A  + P   +A ++  G    
Sbjct: 620 PVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQA 679

Query: 182 SGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFG 240
              + R L    +A  L      A  +     +AL   Q  +    +A    P+  +A  
Sbjct: 680 LETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIA 739

Query: 241 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300
           +              +    QA G  P  + A  +     + +  V   +    Q   L 
Sbjct: 740 SNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLT 799

Query: 301 PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISC 360
            +   A+ +          +            +T        +     +        +  
Sbjct: 800 LAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPV 859

Query: 361 YNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 420
             +   + P     + +     + +  V   +    +   +      A A+     +   
Sbjct: 860 LCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIASNGG-KQALE 918

Query: 421 HVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 451
            V+  +    Q   L PD   A  +     Q
Sbjct: 919 TVQRLLPVLCQDHGLTPDQVVAIASNSGGKQ 949

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  236 bits (602), Expect = 5e-65
 Identities = 54/442 (12%), Positives = 114/442 (25%), Gaps = 2/442 (0%)

Query: 2   HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
             +         + ++ L      +   P +   +   G     L      +    +A  
Sbjct: 534 IASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHG 593

Query: 62  LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA 121
           L         +     +    +   +     A  L P    A ++          +    
Sbjct: 594 LTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLL 653

Query: 122 QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFME 181
               QA  L P  V A ++ G   +A   VQ       +A  +     +A ++  G    
Sbjct: 654 PVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQA 713

Query: 182 SGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFG 240
              + R L    +A  L P    A  + G   +AL   Q  +    +A    P   +A  
Sbjct: 714 LETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIA 773

Query: 241 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300
           +              +    Q  G     + A  +     + +  V   +    Q   L 
Sbjct: 774 SNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLT 833

Query: 301 PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISC 360
                A+ +          +            +T        +     +        +  
Sbjct: 834 QDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPV 893

Query: 361 YNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 420
             +   +       + + G   + +  V   +    +   + P    A A+ +   +   
Sbjct: 894 LCQDHGLTLDQVVAIASNGG-KQALETVQRLLPVLCQDHGLTPDQVVAIASNSGGKQALE 952

Query: 421 HVEAAIKSYKQALLLRPDFPEA 442
            V+  +    Q   L P+   A
Sbjct: 953 TVQRLLPVLCQDHGLTPNQVVA 974

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  220 bits (561), Expect = 1e-59
 Identities = 50/442 (11%), Positives = 108/442 (24%), Gaps = 10/442 (2%)

Query: 2    HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
              +         + ++ L      +    ++   +         L      +    +A  
Sbjct: 568  IASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHG 627

Query: 62   LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA 121
            L P       +     +    +   +     A  L P+   A ++          +    
Sbjct: 628  LTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLL 687

Query: 122  QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFME 181
                QA  L    V A ++     +A   VQ       +A  + P   +A ++  G    
Sbjct: 688  PVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQA 747

Query: 182  SGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFG 240
               + R L    +A  L P    A  +     +AL   Q  +    +         +A  
Sbjct: 748  LETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIA 807

Query: 241  NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300
            +              +    QA G     + A  +     + +  V   +    Q   L 
Sbjct: 808  SNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLT 867

Query: 301  PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQ----GNYAD 356
            P    A+ +          +            +T         +A+              
Sbjct: 868  PDQVVAIASNIGGKQALETVQRLLPVLCQDHGLT-----LDQVVAIASNGGKQALETVQR 922

Query: 357  AISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAY 416
             +    +   + P     + +     + +  V   +    +   + P    A A+     
Sbjct: 923  LLPVLCQDHGLTPDQVVAIASNSGGKQALETVQRLLPVLCQDHGLTPNQVVAIASNGGKQ 982

Query: 417  KDSGHVEAAIKSYKQALLLRPD 438
                 V    +       L  D
Sbjct: 983  ALESIVAQLSRPDPALAALTND 1004

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  162 bits (411), Expect = 4e-41
 Identities = 46/400 (11%), Positives = 97/400 (24%), Gaps = 10/400 (2%)

Query: 13   GSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGN 72
             + ++ L      +   P +   +   G     L      +    +A  L         +
Sbjct: 647  ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIAS 706

Query: 73   MANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNP 132
                 +    +   +     A  L P+   A ++          +        QA  L P
Sbjct: 707  NNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 766

Query: 133  LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYY 192
              V A ++     +A   VQ       +   +     +A ++  G       + R L   
Sbjct: 767  AQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVL 826

Query: 193  KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQ 251
             +A  L      A  +     +AL   Q  +    +     P+  +A  +          
Sbjct: 827  CQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALET 886

Query: 252  ADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLG 311
                +    Q  G     + A  + G   + +  V   +    Q   L P    A+ +  
Sbjct: 887  VQRLLPVLCQDHGLTLDQVVAIASNGGK-QALETVQRLLPVLCQDHGLTPDQVVAIASNS 945

Query: 312  NIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA 371
                    +            +T        +       +   A        +  +    
Sbjct: 946  GGKQALETVQRLLPVLCQDHGLTPNQVVAIASNGGKQALESIVAQLSRPDPALAALTNDH 1005

Query: 372  ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHAN 411
               L   G           A+    + +   P +      
Sbjct: 1006 LVALACLGG--------RPAMDAVKKGLPHAPELIRRVNR 1037

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  152 bits (384), Expect = 8e-38
 Identities = 49/368 (13%), Positives = 101/368 (27%), Gaps = 12/368 (3%)

Query: 13   GSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGN 72
             + ++ L      +     +   +         L      +    +A  L P       +
Sbjct: 681  ETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 740

Query: 73   MANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNP 132
                 +    +   +     A  L P    A ++          +        Q   L  
Sbjct: 741  NGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTL 800

Query: 133  LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYY 192
              V A ++     +A   VQ       +A  +     +A ++  G       + R L   
Sbjct: 801  AQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVL 860

Query: 193  KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYER--G 250
             +   L P    A  +     +AL   Q  +    +      + +    +AS   ++   
Sbjct: 861  CQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVA--IASNGGKQALE 918

Query: 251  QADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNL 310
                 +    Q  G  P  + A  +     + +  V   +    Q   L P+   A+ + 
Sbjct: 919  TVQRLLPVLCQDHGLTPDQVVAIASNSGGKQALETVQRLLPVLCQDHGLTPNQVVAIASN 978

Query: 311  GNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPL 370
            G      +++   +    A  A+T       N+  V     G    A+    + L   P 
Sbjct: 979  GGKQALESIVAQLSRPDPALAALT-------NDHLVALACLGGRP-AMDAVKKGLPHAPE 1030

Query: 371  AADGLVNR 378
                +  R
Sbjct: 1031 LIRRVNRR 1038

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  145 bits (368), Expect = 8e-36
 Identities = 47/369 (12%), Positives = 93/369 (25%), Gaps = 54/369 (14%)

Query: 89  YYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQ 148
               ++  RP  A                  AAQ    + A    L     +     K +
Sbjct: 19  SSGSSMAARPPRAKPAPR-----------RRAAQPSDASPAAQVDLRTLGYSQQQQEKIK 67

Query: 149 GLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLN 208
             V+   + + EAL          +++  L      L      Y+  +   P      + 
Sbjct: 68  PKVRSTVAQHHEALVGH---GFTHAHIVALSQHPAALGTVAVTYQHIITALPEATHEDIV 124

Query: 209 LGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLAS-TYYERGQADMAILYYKQAIGCDP 267
                 +     EA++     ++  P  +  G L          A  A+   + A+   P
Sbjct: 125 GVGKQWSGARALEALLTDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAP 184

Query: 268 RFL-----EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPA 322
             L      A  +     + +  V   +    Q   L P+   A+ +             
Sbjct: 185 LNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGK-------- 236

Query: 323 AASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTY 382
                                     +        +    +   + P     + +     
Sbjct: 237 --------------------------QALETMQRLLPVLCQAHGLPPDQVVAIASNIGGK 270

Query: 383 KEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 442
           + +  V   +    +A  + P    A A+     +    V+  +    QA  L PD   A
Sbjct: 271 QALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVA 330

Query: 443 TCNLLHTLQ 451
             +     Q
Sbjct: 331 IASHDGGKQ 339

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  297 bits (762), Expect = 5e-92
 Identities = 63/432 (14%), Positives = 135/432 (31%), Gaps = 69/432 (15%)

Query: 39  LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP 98
            G      + Y        +++       E +  +       G +  A+  +  A++  P
Sbjct: 9   SGVDLGTENLY-------FQSMA----DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP 57

Query: 99  NFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCY 158
           +   A+   A+ ++  G+   A     + + L      A    G+L+  QG + EA   +
Sbjct: 58  DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDF 117

Query: 159 LEALRIQPTFAIAWSNLAGLF---------------MESGDLNRALQYYKEAVKLKPTFP 203
            + L+  P+        + L                  SGD   A+ +  + +++     
Sbjct: 118 KKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDA 177

Query: 204 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQA 262
           +        +   G P++AI   + A + +  N  AF  +++ YY+ G  ++++   ++ 
Sbjct: 178 ELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVREC 237

Query: 263 IGCDPRFLEAYNNL------------GNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNL 310
           +  D      + +                L   GR  +A   Y   +  +PS  +     
Sbjct: 238 LKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRS 297

Query: 311 GNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPL 370
                                            +   + +     +AI   +EVL+++P 
Sbjct: 298 ------------------------------KERICHCFSKDEKPVEAIRVCSEVLQMEPD 327

Query: 371 AADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYK 430
             + L +R   Y       +AIQDY  A        +    L  A +     +       
Sbjct: 328 NVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKI 387

Query: 431 QALLLRPDFPEA 442
             +       E 
Sbjct: 388 LGVKRNAKKQEI 399

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  251 bits (642), Expect = 8e-75
 Identities = 60/427 (14%), Positives = 128/427 (29%), Gaps = 50/427 (11%)

Query: 2   HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
           H+ L  ++  +G    AL   ++  + +P           ++  +      +    + ++
Sbjct: 29  HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88

Query: 62  LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWS---------------N 106
           L+  F        +   ++G +D A   +   ++  P+  +                  +
Sbjct: 89  LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRS 148

Query: 107 LASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP 166
            A      G    A     + L +     +           +G  ++A S    A +++ 
Sbjct: 149 QALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKN 208

Query: 167 TFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKA----------- 215
               A+  ++ L+ + GD   +L   +E +KL       + +   V K            
Sbjct: 209 DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELI 268

Query: 216 -LGMPQEAIMCYQRAVQTRPN-----AIAFGNLASTYYERGQADMAILYYKQAIGCDPRF 269
             G   +A   Y+  ++T P+       +   +   + +  +   AI    + +  +P  
Sbjct: 269 RDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDN 328

Query: 270 LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKA 329
           + A  +   A       DEAIQ Y        +  Q    L               YYK 
Sbjct: 329 VNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQS-QKRDYYKI 387

Query: 330 TLAVTTGLSAPFNNLAVIYKQQGNYADAISCY-NEVLRIDPLAADGLVNRGNTYKEIGRV 388
            L V               K+     + I  Y    L+  P        +    K+   +
Sbjct: 388 -LGV---------------KRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDI 431

Query: 389 TDAIQDY 395
             A +  
Sbjct: 432 AAAKEVL 438

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  246 bits (630), Expect = 4e-73
 Identities = 59/391 (15%), Positives = 117/391 (29%), Gaps = 77/391 (19%)

Query: 100 FADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYL 159
                 +       +    ++              V+ H  LG  + A G + +A S + 
Sbjct: 2   HHHHHHSSGVDLGTENLYFQSMAD-----------VEKHLELGKKLLAAGQLADALSQFH 50

Query: 160 EALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMP 219
            A+   P   IA+   A +F+  G    AL    + ++LK  F  A L  G++    G  
Sbjct: 51  AAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKL 110

Query: 220 QEAIMCYQRAVQTRPN----------------AIAFGNLASTYYERGQADMAILYYKQAI 263
            EA   +++ +++ P+                     + A   +  G    AI +  + +
Sbjct: 111 DEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKIL 170

Query: 264 GCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAA 323
                  E            G   +AI        L+  + +A   +  +Y +       
Sbjct: 171 EVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQ------- 223

Query: 324 ASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP------------LA 371
                                       G++  ++S   E L++D               
Sbjct: 224 ---------------------------LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK 256

Query: 372 ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAE----AHANLASAYKDSGHVEAAIK 427
            + L+         GR TDA   Y   +   P++AE    +   +   +        AI+
Sbjct: 257 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIR 316

Query: 428 SYKQALLLRPDFPEATCNLLHTLQCVCSWED 458
              + L + PD   A  +          +++
Sbjct: 317 VCSEVLQMEPDNVNALKDRAEAYLIEEMYDE 347

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  101 bits (254), Expect = 8e-23
 Identities = 32/230 (13%), Positives = 68/230 (29%), Gaps = 34/230 (14%)

Query: 2   HMALAHQMYKSGSYKQALEHSNSVYERNP------------LRTDNLLLLGAIYYQLHDY 49
              ++   Y+ G ++ +L       + +              + + L+       +   Y
Sbjct: 214 FYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRY 273

Query: 50  DMCIARNEEALRLEPRFAE----CYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWS 105
               ++ E  ++ EP  AE        + + + +      AIR     +++ P+  +A  
Sbjct: 274 TDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALK 333

Query: 106 NLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLV-------------- 151
           + A AY+ +   +EA Q    A   N         L    +                   
Sbjct: 334 DRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRN 393

Query: 152 ---QEAYSCYLE-ALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVK 197
              QE    Y + AL+  P              +  D+  A +   +   
Sbjct: 394 AKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score =  276 bits (707), Expect = 1e-85
 Identities = 55/327 (16%), Positives = 113/327 (34%), Gaps = 13/327 (3%)

Query: 13  GSYKQALEHS-NSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYG 71
           GSY +  E       +      D ++ L   +Y   D+ MC       +  +P  A C  
Sbjct: 1   GSYNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLP 60

Query: 72  NMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA-QCCRQALAL 130
                  E    +         ++L P+   +W  +   Y+  G  NE A +   +A  L
Sbjct: 61  VHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL 120

Query: 131 NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQ 190
                 A    G+    +    +A + Y  A ++     +    +   +  + +   A +
Sbjct: 121 EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAER 180

Query: 191 YYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP----------NAIAFG 240
           ++ +A+ + P  P     +G V    G  + A   +  A++                   
Sbjct: 181 FFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLN 240

Query: 241 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300
           NL     +  +   A+ Y++QA+   P+    Y+ +G     +G  + A+  ++  L L+
Sbjct: 241 NLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300

Query: 301 PSHPQALTNLGNIYMEWNML-PAAASY 326
                ++T LG+    +     A    
Sbjct: 301 RDDTFSVTMLGHCIEMYIGDSEAYIGA 327

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score =  269 bits (691), Expect = 3e-83
 Identities = 46/339 (13%), Positives = 105/339 (30%), Gaps = 27/339 (7%)

Query: 93  AIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQ 152
           +++      D   +LA  +          +     +  +P            +       
Sbjct: 14  SVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKAN 73

Query: 153 EAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLN-RALQYYKEAVKLKPTFPDAYLNLGN 211
           E +    + + + P+  ++W  +   ++  G  N  A +Y  +A  L+ T+  A++  G+
Sbjct: 74  ELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGH 133

Query: 212 VYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFL 270
            +       +A+  Y  A Q      +    +   Y     + +A  ++ QA+   P   
Sbjct: 134 SFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDP 193

Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 330
              + +G      G    A + +   L    +    +T                      
Sbjct: 194 FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTV-----------DKWEPLL--- 239

Query: 331 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 390
                      NNL  + ++   YA+A+  + + L + P  A      G  +  +G   +
Sbjct: 240 -----------NNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFEN 288

Query: 391 AIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSY 429
           A+  +  A+ +R     +   L    +       A    
Sbjct: 289 AVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYIGA 327

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score =  268 bits (686), Expect = 1e-82
 Identities = 50/302 (16%), Positives = 111/302 (36%), Gaps = 11/302 (3%)

Query: 4   ALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLE 63
           +LA + Y +  +K   + ++ V E++P     L +      +L+  +     + + + L 
Sbjct: 27  SLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY 86

Query: 64  PRFAECYGNMANAWKEKG-DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQ 122
           P     +  +   +   G   + A RY   A  L   +  AW     ++  +   ++A  
Sbjct: 87  PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMA 146

Query: 123 CCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMES 182
               A  L          +G         + A   + +AL I P        +  +  ++
Sbjct: 147 AYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQN 206

Query: 183 GDLNRALQYYKEAVKL---------KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR 233
           G+   A +++ +A++             +     NLG+V + L    EA+  +++A+   
Sbjct: 207 GEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI 266

Query: 234 PN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQC 292
           P  A  +  +   +   G  + A+ Y+  A+G       +   LG+ ++      EA   
Sbjct: 267 PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYIG 326

Query: 293 YN 294
            +
Sbjct: 327 AD 328

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score =  213 bits (545), Expect = 1e-62
 Identities = 39/310 (12%), Positives = 82/310 (26%), Gaps = 45/310 (14%)

Query: 153 EAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNV 212
            + +   E++           +LA     + D     +     ++  P            
Sbjct: 6   PSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGT 65

Query: 213 YKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQ-ADMAILYYKQAIGCDPRFL 270
              L    E      + V   P+  +++  +   Y   G   + A  Y  +A   +  + 
Sbjct: 66  LVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYG 125

Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 330
            A+   G++       D+A+  Y     L       +  +G  Y                
Sbjct: 126 PAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGL-------------- 171

Query: 331 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 390
                                 N   A   +++ L I P     +   G    + G    
Sbjct: 172 --------------------TNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKT 211

Query: 391 AIQDYIRAITIRPTM---------AEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE 441
           A + ++ A+     +              NL    +       A+  ++QAL+L P    
Sbjct: 212 AEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNAS 271

Query: 442 ATCNLLHTLQ 451
               + +   
Sbjct: 272 TYSAIGYIHS 281

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 49.2 bits (118), Expect = 3e-06
 Identities = 13/89 (14%), Positives = 26/89 (29%)

Query: 2   HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
              L H   K   Y +AL++        P        +G I+  + +++  +     AL 
Sbjct: 239 LNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298

Query: 62  LEPRFAECYGNMANAWKEKGDIDLAIRYY 90
           L          + +  +       A    
Sbjct: 299 LRRDDTFSVTMLGHCIEMYIGDSEAYIGA 327

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score =  273 bits (701), Expect = 3e-84
 Identities = 64/352 (18%), Positives = 122/352 (34%), Gaps = 48/352 (13%)

Query: 40  GAIYYQLHDY-DMCIARNEEALRLEP----RFAECYGNMANAWKEKGDIDLAIRYYLVAI 94
              +  L DY D+  A  ++  + E     R             ++GD+  A+  +  A+
Sbjct: 32  AEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAV 91

Query: 95  ELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEA 154
           +  P   +AW  L +      +   A    R+ L L P    A   L      + L ++A
Sbjct: 92  QQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQA 151

Query: 155 YSCYLEALRIQPTFAIAWS---------------NLAGLFMESGDLNRALQYYKEAVKLK 199
                + LR  P +A   +                + G  +         + +  AV+L 
Sbjct: 152 CEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD 211

Query: 200 PTFPDA--YLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAI 256
           PT  D      LG ++   G   +A+ C+  A+  RPN  + +  L +T     Q++ A+
Sbjct: 212 PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAV 271

Query: 257 LYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYME 316
             Y++A+   P ++ +  NLG +  ++G   EA++ + + L++Q          G +   
Sbjct: 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN 331

Query: 317 -WNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI 367
            W                        + L +     G      +     L  
Sbjct: 332 IW------------------------STLRLALSMLGQSDAYGAADARDLST 359

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score =  250 bits (640), Expect = 1e-75
 Identities = 53/414 (12%), Positives = 104/414 (25%), Gaps = 82/414 (19%)

Query: 57  EEALRLEPRFAECYGNMANAWKEKGDI------------DLAIRYYLVAIELRPN----F 100
           E A        + +  +    +E                DL    Y    +         
Sbjct: 4   ERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRD 63

Query: 101 ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLE 160
                      +++G L  A      A+  +P  ++A   LG           A S    
Sbjct: 64  HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRR 123

Query: 161 ALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQ 220
            L ++P    A   LA  F       +A +  ++ ++  P +                  
Sbjct: 124 CLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAG------ 177

Query: 221 EAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEA--YNNLGN 278
                                +  +             +  A+  DP  ++      LG 
Sbjct: 178 ------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV 225

Query: 279 ALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLS 338
                G  D+A+ C+   LS++P+       LG                           
Sbjct: 226 LFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATL------------------------ 261

Query: 339 APFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRA 398
                            +A++ Y   L + P       N G +   +G   +A++ ++ A
Sbjct: 262 ----------ANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEA 311

Query: 399 ITIRPTMAEAHANLAS-----------AYKDSGHVEAAIKSYKQAL-LLRPDFP 440
           + ++           +           A    G  +A   +  + L  L   F 
Sbjct: 312 LNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFG 365

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score =  166 bits (423), Expect = 2e-45
 Identities = 40/245 (16%), Positives = 72/245 (29%), Gaps = 35/245 (14%)

Query: 14  SYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYG-- 71
           + ++ LE         P     L+ L   +              + LR  P +A      
Sbjct: 120 ALRRCLEL-------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPA 172

Query: 72  -------------NMANAWKEKGDIDLAIRYYLVAIELRPNF--ADAWSNLASAYMRKGR 116
                         +  +             +L A+ L P     D    L   +   G 
Sbjct: 173 EEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGE 232

Query: 117 LNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLA 176
            ++A  C   AL++ P      + LG  +      +EA + Y  AL +QP +  +  NL 
Sbjct: 233 YDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLG 292

Query: 177 GLFMESGDLNRALQYYKEAVKLKPTFPDAYL-----------NLGNVYKALGMPQEAIMC 225
              +  G    A++++ EA+ ++                    L      LG        
Sbjct: 293 ISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352

Query: 226 YQRAV 230
             R +
Sbjct: 353 DARDL 357

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score =  266 bits (683), Expect = 1e-81
 Identities = 62/383 (16%), Positives = 113/383 (29%), Gaps = 57/383 (14%)

Query: 86  AIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLM 145
           A        E        W  +A                               +     
Sbjct: 8   AKAAVESDTEFWDKMQAEWEEMAR--------------------------RNWISENQEA 41

Query: 146 KAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDA 205
           + Q  V  +   Y                     ++ GDL   + + + A+   P   +A
Sbjct: 42  QNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEA 101

Query: 206 YLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIG 264
           +  LG         Q AI+  QR ++ +PN   A   LA +Y        A    K  I 
Sbjct: 102 WQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIK 161

Query: 265 CDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAA 324
            +P++     N   +     R+ ++    +    ++  + +A    G+            
Sbjct: 162 QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGD--------MIDP 213

Query: 325 SYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKE 384
                              L V++   G +  AI  +N  L + P         G T   
Sbjct: 214 DLQ--------------TGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLAN 259

Query: 385 IGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA-- 442
             R  +A++ Y RA+ I+P    +  NL  +  + G    A+ ++  AL L+        
Sbjct: 260 GDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQ 319

Query: 443 ------TCNLLHTLQCVCSWEDR 459
                 + N+   L+   S  D+
Sbjct: 320 VPHPAISGNIWAALRIALSLMDQ 342

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score =  252 bits (646), Expect = 2e-76
 Identities = 56/407 (13%), Positives = 114/407 (28%), Gaps = 70/407 (17%)

Query: 46  LHDYDMCIARNEEALRLEPRFAECYGNMAN--------AWKEKGDIDLAIRYYLVAIELR 97
             +++   A  E       +    +  MA           + +  +  + + Y    E  
Sbjct: 2   AMEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENP 61

Query: 98  PNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSC 157
                         +++G L         A+  +P   +A   LG         Q A   
Sbjct: 62  FKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVA 121

Query: 158 YLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG 217
               L +QP    A   LA  +  +     A +  K  +K  P +     N         
Sbjct: 122 LQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTR 181

Query: 218 MPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEA--YNN 275
              ++ +                            +     Y +A   +   ++      
Sbjct: 182 RMSKSPVDS-----------------------SVLEGVKELYLEAAHQNGDMIDPDLQTG 218

Query: 276 LGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTT 335
           LG      G  + AI  +N  L+++P                                  
Sbjct: 219 LGVLFHLSGEFNRAIDAFNAALTVRPEDYSL----------------------------- 249

Query: 336 GLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDY 395
                +N L           +A+  Y   L I P       N G +   +G   +A+ ++
Sbjct: 250 -----WNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNF 304

Query: 396 IRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 442
           + A++++            A   SG++ AA++    +L+ +P+  +A
Sbjct: 305 LTALSLQRKSRNQQQVPHPAI--SGNIWAALR-IALSLMDQPELFQA 348

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score =  252 bits (646), Expect = 2e-76
 Identities = 59/377 (15%), Positives = 107/377 (28%), Gaps = 43/377 (11%)

Query: 14  SYKQALEHSNSVYER-NPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGN 72
           + +   E  + +      +   N +                           +       
Sbjct: 11  AVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFE 70

Query: 73  MANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNP 132
                 ++GD+ + I +   AI   P  A+AW  L            A    ++ L L P
Sbjct: 71  EGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP 130

Query: 133 LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQ-- 190
             + A   L          Q+A       ++  P +     N  G    +  ++++    
Sbjct: 131 NNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDS 190

Query: 191 --------YYKEAVKLKPTFPDA--YLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAF 239
                    Y EA        D      LG ++   G    AI  +  A+  RP     +
Sbjct: 191 SVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLW 250

Query: 240 GNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 299
             L +T     +++ A+  Y +A+   P F+ +  NLG +  ++G   EA+  +   LSL
Sbjct: 251 NRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSL 310

Query: 300 QPSHPQALTNLGNIYME--WNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADA 357
           Q                  W  L                       +A+    Q     A
Sbjct: 311 QRKSRNQQQVPHPAISGNIWAAL----------------------RIALSLMDQPELFQA 348

Query: 358 -----ISCYNEVLRIDP 369
                +        +DP
Sbjct: 349 ANLGDLDVLLRAFNLDP 365

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score =  128 bits (323), Expect = 3e-32
 Identities = 28/229 (12%), Positives = 59/229 (25%), Gaps = 42/229 (18%)

Query: 250 GQADMAILYYKQAIGCDPRFLEAYNNLGN--------ALKDVGRVDEAIQCYNQCLSLQP 301
            + + A    +       +    +  +            ++   V  + + Y        
Sbjct: 3   MEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPF 62

Query: 302 SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCY 361
                    G   ++                                  +G+    I   
Sbjct: 63  KDWPGAFEEGLKRLK----------------------------------EGDLPVTILFM 88

Query: 362 NEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGH 421
              +  DP  A+     G T  E      AI    R + ++P   +A   LA +Y ++ H
Sbjct: 89  EAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSH 148

Query: 422 VEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGII 470
            + A ++ K  +   P +     N   +              S +EG+ 
Sbjct: 149 QQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVK 197

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score =  258 bits (662), Expect = 3e-79
 Identities = 42/318 (13%), Positives = 93/318 (29%), Gaps = 38/318 (11%)

Query: 64  PRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQC 123
             + E       +  +  ++  A   +    +  P   +AW +L        +   A   
Sbjct: 18  YMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIA 77

Query: 124 CRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWS---------- 173
              A  L+P  +  H+ L      +     A +     L  QP +    S          
Sbjct: 78  LNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDID 137

Query: 174 -----NLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQR 228
                +    F    +          A+++ P     + +LG +Y        A    +R
Sbjct: 138 DLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRR 197

Query: 229 AVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVD 287
           AV+ RP+ A  +  L +T     +   A+  Y +A+  +P ++    N+  +  ++ + D
Sbjct: 198 AVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYD 257

Query: 288 EAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVI 347
            A +   + + +Q                     +   +++  L                
Sbjct: 258 LAAKQLVRAIYMQVGGTTPTGEASR-----EATRSMWDFFRMLL---------------- 296

Query: 348 YKQQGNYADAISCYNEVL 365
                        Y + +
Sbjct: 297 -NVMNRPDLVELTYAQNV 313

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score =  247 bits (634), Expect = 3e-75
 Identities = 51/377 (13%), Positives = 90/377 (23%), Gaps = 73/377 (19%)

Query: 81  GDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSN 140
           G +      Y         + +       + ++   L EAA          P   +A  +
Sbjct: 1   GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS 60

Query: 141 LGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKP 200
           LG           A      A  + P      + LA       + N AL   +  +  +P
Sbjct: 61  LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 120

Query: 201 TFPDAY---------------LNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLAS 244
            +                    +    + A    +E       A++  PN A    +L  
Sbjct: 121 QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGV 180

Query: 245 TYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHP 304
            Y      D A    ++A+   P   + +N LG  L +  R  EA+  YN+ L + P + 
Sbjct: 181 LYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYV 240

Query: 305 QALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEV 364
           +                                     N+AV Y     Y  A       
Sbjct: 241 RV----------------------------------MYNMAVSYSNMSQYDLAAKQLVRA 266

Query: 365 LRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEA 424
           + +                                                       + 
Sbjct: 267 IYMQVGGTTPTGEASREATR----------------------SMWDFFRMLLNVMNRPDL 304

Query: 425 AIKSYKQAL-LLRPDFP 440
              +Y Q +     +F 
Sbjct: 305 VELTYAQNVEPFAKEFG 321

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score =  240 bits (615), Expect = 2e-72
 Identities = 46/318 (14%), Positives = 90/318 (28%), Gaps = 50/318 (15%)

Query: 149 GLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLN 208
           G + +  + Y         +           ++  +L  A   ++   +  P   +A+ +
Sbjct: 1   GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS 60

Query: 209 LGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDP 267
           LG           AI+    A    P        LA ++     A+ A+   +  +   P
Sbjct: 61  LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 120

Query: 268 RFLEAYN---------------NLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGN 312
           ++ +  +               +            E     +  L + P+  Q   +LG 
Sbjct: 121 QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG- 179

Query: 313 IYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAA 372
                                            V+Y    NY  A +     + + P  A
Sbjct: 180 ---------------------------------VLYNLSNNYDSAAANLRRAVELRPDDA 206

Query: 373 DGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQA 432
                 G T     R  +A+  Y RA+ I P       N+A +Y +    + A K   +A
Sbjct: 207 QLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRA 266

Query: 433 LLLRPDFPEATCNLLHTL 450
           + ++      T       
Sbjct: 267 IYMQVGGTTPTGEASREA 284

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score =  217 bits (556), Expect = 3e-64
 Identities = 48/313 (15%), Positives = 91/313 (29%), Gaps = 36/313 (11%)

Query: 2   HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
            M     M K  +  +A     +V +  P R +    LG    +     + I     A  
Sbjct: 24  PMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARM 83

Query: 62  LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWS---------------N 106
           L+P+    +  +A +   + + + A+      +  +P +    S               +
Sbjct: 84  LDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQS 143

Query: 107 LASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP 166
               +       E       AL +NP     H++LG L         A +    A+ ++P
Sbjct: 144 EDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP 203

Query: 167 TFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCY 226
             A  W+ L            AL  Y  A+ + P +     N+   Y  +     A    
Sbjct: 204 DDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQL 263

Query: 227 QRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRV 286
            RA+  +          +   E  +     ++               +     L  + R 
Sbjct: 264 VRAIYMQVGG------TTPTGEASREATRSMW---------------DFFRMLLNVMNRP 302

Query: 287 DEAIQCYNQCLSL 299
           D     Y Q +  
Sbjct: 303 DLVELTYAQNVEP 315

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score =  174 bits (443), Expect = 1e-48
 Identities = 37/256 (14%), Positives = 74/256 (28%), Gaps = 34/256 (13%)

Query: 14  SYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECY--- 70
           +   A          +P        L   +   H+ +  +A     L  +P++ +     
Sbjct: 77  ALNHARML-------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVN 129

Query: 71  ------------GNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLN 118
                        +    +    +          A+E+ PN A   ++L   Y      +
Sbjct: 130 LQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYD 189

Query: 119 EAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGL 178
            AA   R+A+ L P      + LG  +      QEA   Y  AL I P +     N+A  
Sbjct: 190 SAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVS 249

Query: 179 FMESGDLNRALQYYKEAVKLKPTFPDAYLN------------LGNVYKALGMPQEAIMCY 226
           +      + A +    A+ ++                        +   +  P    + Y
Sbjct: 250 YSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309

Query: 227 QRAVQTRPNAIAFGNL 242
            + V+         ++
Sbjct: 310 AQNVEPFAKEFGLQSM 325

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score =  246 bits (630), Expect = 1e-75
 Identities = 46/239 (19%), Positives = 91/239 (38%), Gaps = 5/239 (2%)

Query: 83  IDLAIRYYLVAIELRPNFADAWSNLASAY----MRKGRLNEAAQCCRQALALNPLLVDAH 138
           +  +  ++  +  L P  +   S             G   +AA+   +A+  N      +
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPY 60

Query: 139 SNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL 198
            N  NL+ +   ++ A + Y +AL +  + A A+     +++       A   +++A++ 
Sbjct: 61  INFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA 120

Query: 199 KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAIL 257
                D +  LG V   L  P+ A+   QRAV+   N   A           G  D A+ 
Sbjct: 121 GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALS 180

Query: 258 YYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYME 316
            +      DP   +A+ N G         ++A++  ++ + +QP H  AL     +   
Sbjct: 181 QFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHH 239

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score =  223 bits (571), Expect = 3e-67
 Identities = 38/272 (13%), Positives = 79/272 (29%), Gaps = 39/272 (14%)

Query: 185 LNRALQYYKEAVKLKPTFPDAYLNLGNVY----KALGMPQEAIMCYQRAVQTRPN-AIAF 239
           +  +  ++  +  L P         G          G  ++A   + +A++     AI +
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPY 60

Query: 240 GNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 299
            N A+      + + A+ +Y +A+  D     AY   GN         EA   + + L  
Sbjct: 61  INFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA 120

Query: 300 QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAIS 359
              +                                     F  L  +  +      A+ 
Sbjct: 121 GMENGDL----------------------------------FYMLGTVLVKLEQPKLALP 146

Query: 360 CYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDS 419
                + ++    +     G      G + +A+  +       P  A+A  N    Y   
Sbjct: 147 YLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYK 206

Query: 420 GHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 451
            + E A++   +A+ ++PD   A         
Sbjct: 207 ENREKALEMLDKAIDIQPDHMLALHAKKLLGH 238

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score =  222 bits (567), Expect = 1e-66
 Identities = 45/276 (16%), Positives = 92/276 (33%), Gaps = 39/276 (14%)

Query: 151 VQEAYSCYLEALRIQPTFAIAWSNLA----GLFMESGDLNRALQYYKEAVKLKPTFPDAY 206
           +  ++  +  +  + P  +   S       G   E GD  +A + + +A++        Y
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPY 60

Query: 207 LNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGC 265
           +N  N+  ++   + A+  Y +A++   + A A+    + Y  +     A   +++A+  
Sbjct: 61  INFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA 120

Query: 266 DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAAS 325
                + +  LG  L  + +   A+    + + L  +  +A    G              
Sbjct: 121 GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCL----------- 169

Query: 326 YYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEI 385
                                    +G   +A+S +  V   DP  AD   N G TY   
Sbjct: 170 -----------------------ANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYK 206

Query: 386 GRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGH 421
                A++   +AI I+P    A            H
Sbjct: 207 ENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score =  220 bits (562), Expect = 4e-66
 Identities = 41/240 (17%), Positives = 77/240 (32%), Gaps = 4/240 (1%)

Query: 13  GSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGN 72
             +  +            +             +  DY+       +A+      A  Y N
Sbjct: 6   HHHHHSSGLVPRGSHMASMTGGQQ---MGRGSEFGDYEKAAEAFTKAIEENKEDAIPYIN 62

Query: 73  MANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNP 132
            AN      +++ A+ +Y  A+EL  + A A+    + Y+ K    EA     +AL    
Sbjct: 63  FANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM 122

Query: 133 LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYY 192
              D    LG ++      + A      A+ +      A           G L+ AL  +
Sbjct: 123 ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQF 182

Query: 193 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQ 251
               +  P   DA+ N G  Y      ++A+    +A+  +P+  +A        +    
Sbjct: 183 AAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score =  244 bits (623), Expect = 7e-72
 Identities = 68/430 (15%), Positives = 125/430 (29%), Gaps = 60/430 (13%)

Query: 1   MHMALAHQMYKSGSYKQALEHSNSVYE----RNPLRTDNLLL-----LGAIYYQLHDYDM 51
           M   LA+  +  G  + ALE      E     +  + +   L        +YY +     
Sbjct: 53  MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSD 112

Query: 52  CIARNEEALRLEPRFA--------ECYGNMANAWK--EKGDIDLAIRYYLVAIELRPNFA 101
                ++   +  +F+        E                 + A   +  A+E +P   
Sbjct: 113 VQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNP 172

Query: 102 DAWSNLASAYMR---KGRLNEAAQCCRQALALNPLLVDAHSNLGN----LMKAQGLVQEA 154
           +  S LA A  R         A    RQA+ LNP        L      + +      E 
Sbjct: 173 EFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEG 232

Query: 155 YSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVY- 213
                EAL   P       + A  +    + ++A++  K+A++  P     +  +G  Y 
Sbjct: 233 EKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYR 292

Query: 214 ------------------KALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADM 254
                             K L +   A+   ++A +   N       LAS +    Q + 
Sbjct: 293 AKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEE 352

Query: 255 AILYYKQAIGCDPRFLEA---YNNLGNALKD-VGRVDEAIQCYNQCLSLQPSHPQALTNL 310
           A  Y+++    +   +     +   GN     +   D+AI  + + + +     +     
Sbjct: 353 AEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREK---- 408

Query: 311 GNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPL 370
                   M        K  L+     S   + LA + +       A       L    L
Sbjct: 409 ------EKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSL 462

Query: 371 AADGLVNRGN 380
                   G 
Sbjct: 463 IPSASSWNGE 472

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score =  239 bits (610), Expect = 3e-70
 Identities = 63/457 (13%), Positives = 133/457 (29%), Gaps = 66/457 (14%)

Query: 46  LHDYDMCIARNEEALRLEPRF------AECYGNMANAWKEKGDIDLAIRYYLVAIELR-- 97
           L + +  +   E+ +     F      A     +A     KG  + A+     A EL   
Sbjct: 24  LMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQ 83

Query: 98  -------PNFADAWSNLASAYMRKGRLNEAAQCCRQALALNP--------LLVDAHSNLG 142
                        W N A  Y   GRL++      +   +             +     G
Sbjct: 84  EHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEG 143

Query: 143 N--LMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNR---ALQYYKEAVK 197
              L       + A  C+ +AL  +P      S LA       +      A+   ++A++
Sbjct: 144 WTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR 203

Query: 198 LKPTFPDAYLNLGNVY----KALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQA 252
           L P      + L        +      E     + A++  P       + A  Y  + + 
Sbjct: 204 LNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEP 263

Query: 253 DMAILYYKQAIGCDPRFLEAYNNLGNALKDVGR-------------------VDEAIQCY 293
           D AI   K+A+   P     +  +G   +                       +  A+   
Sbjct: 264 DKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHL 323

Query: 294 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT---TGLSAPFNNLAVI-YK 349
            +      +  +  + L +++   +    A  Y++   +                     
Sbjct: 324 KKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLY 383

Query: 350 QQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAH 409
           Q      AI  + E ++I+  + +      +  ++I +           ++     +EA 
Sbjct: 384 QMKCEDKAIHHFIEGVKINQKSREKE-KMKDKLQKIAK---------MRLSKNGADSEAL 433

Query: 410 ANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
             LA   + +  ++ A +  ++ L      P A+   
Sbjct: 434 HVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score =  197 bits (502), Expect = 4e-55
 Identities = 56/388 (14%), Positives = 104/388 (26%), Gaps = 60/388 (15%)

Query: 75  NAWKEKGDIDLAIRYYLVAIEL--RPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNP 132
           N  + +  +D          E   R   A   + LA     KG+   A +C R+A  L  
Sbjct: 23  NLMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQ 82

Query: 133 LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYY 192
                 +                              + W N A ++   G L+    Y 
Sbjct: 83  QEHADQAE-------------------------IRSLVTWGNYAWVYYHMGRLSDVQIYV 117

Query: 193 KEAVKLKPTFPDAY-LNLGNVYKALGM---------PQEAIMCYQRAVQTRP-NAIAFGN 241
            +   +   F   Y +    +    G           + A +C+++A++ +P N      
Sbjct: 118 DKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSG 177

Query: 242 LASTYY---ERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDV----GRVDEAIQCYN 294
           LA   Y       +  AI   +QAI  +P        L   L  +        E  +   
Sbjct: 178 LAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVE 237

Query: 295 QCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNY 354
           + L   P     L +    Y   +    A    K  L      +     +   Y+ +   
Sbjct: 238 EALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQ 297

Query: 355 ADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLAS 414
                          +            K +  +  A+    +A      +    + LAS
Sbjct: 298 ---------------VMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILAS 342

Query: 415 AYKDSGHVEAAIKSYKQALLLRPDFPEA 442
            +  +   E A   +++           
Sbjct: 343 LHALADQYEEAEYYFQKEFSKELTPVAK 370

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 96.5 bits (240), Expect = 5e-21
 Identities = 32/229 (13%), Positives = 68/229 (29%), Gaps = 44/229 (19%)

Query: 250 GQADMAILYYKQAIGCDPRFL------EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 303
            + + ++  ++  +     F          N L       G+ + A++C  +   L    
Sbjct: 25  MEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQE 84

Query: 304 PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNE 363
                 + ++                           + N A +Y   G  +D     ++
Sbjct: 85  HADQAEIRSL-------------------------VTWGNYAWVYYHMGRLSDVQIYVDK 119

Query: 364 VLRIDP--------LAADGLVNRGNTYKEIG--RVTDAIQDYIRAITIRPTMAEAHANLA 413
           V  +           + +     G T  + G  +   A   + +A+  +P   E  + LA
Sbjct: 120 VKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLA 179

Query: 414 SAY---KDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDR 459
            A     +    + AI   +QA+ L PD       L   L  +    + 
Sbjct: 180 IASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEE 228

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score =  233 bits (598), Expect = 5e-71
 Identities = 41/256 (16%), Positives = 77/256 (30%), Gaps = 5/256 (1%)

Query: 64  PRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQC 123
              A+      N + +    D AI +Y  A EL  +     +N A+A   KG    A   
Sbjct: 2   GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDIT-YLNNRAAAEYEKGEYETAIST 60

Query: 124 CRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESG 183
              A+     +   +  +       G          + +             A +  +  
Sbjct: 61  LNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSL-TEHRTADILTKLR 119

Query: 184 DLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNL 242
           +  + L+  +    + P   +     G  Y        A+  Y   ++  P  A  + N 
Sbjct: 120 NAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNR 179

Query: 243 ASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS 302
           A+   +      AI    +AI  DP F+ AY     A   V     A++  +   +    
Sbjct: 180 AAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAE 239

Query: 303 HPQALTNLG--NIYME 316
                +      +Y +
Sbjct: 240 VNNGSSAREIDQLYYK 255

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score =  227 bits (580), Expect = 2e-68
 Identities = 41/247 (16%), Positives = 81/247 (32%), Gaps = 1/247 (0%)

Query: 200 PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYY 259
            +  D     GN +       EAI  Y +A +   +     N A+  YE+G+ + AI   
Sbjct: 2   GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTL 61

Query: 260 KQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNM 319
             A+         Y  +  +   +G     +    + +              +I  +   
Sbjct: 62  NDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSL-TEHRTADILTKLRN 120

Query: 320 LPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRG 379
                   +A   V    +         Y  + ++ +A+  Y E+++  P  A G  NR 
Sbjct: 121 AEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRA 180

Query: 380 NTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 439
               ++    +AI D  +AI   P    A+   A+A        +A+++   A     + 
Sbjct: 181 AALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEV 240

Query: 440 PEATCNL 446
              +   
Sbjct: 241 NNGSSAR 247

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score =  214 bits (548), Expect = 6e-64
 Identities = 34/278 (12%), Positives = 77/278 (27%), Gaps = 35/278 (12%)

Query: 136 DAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEA 195
           D     GN         EA   Y +A  +        +N A    E G+   A+    +A
Sbjct: 6   DKEKAEGNKFYKARQFDEAIEHYNKAWELHKDIT-YLNNRAAAEYEKGEYETAISTLNDA 64

Query: 196 VKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMA 255
           V+        Y  +   +  +G     +   ++ ++    ++     A    +   A+  
Sbjct: 65  VEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKE 124

Query: 256 ILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM 315
           +   +     +P   E     G           A++ Y + +   P   +          
Sbjct: 125 LKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARG--------- 175

Query: 316 EWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGL 375
                                    ++N A    +  ++ +AI+  N+ +  DP      
Sbjct: 176 -------------------------YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAY 210

Query: 376 VNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLA 413
           + +      +     A++    A T    +    +   
Sbjct: 211 IRKATAQIAVKEYASALETLDAARTKDAEVNNGSSARE 248

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score =  193 bits (493), Expect = 3e-56
 Identities = 44/255 (17%), Positives = 83/255 (32%), Gaps = 15/255 (5%)

Query: 10  YKSGSYKQALEHSNSVYERNPLRTDNLLL--LGAIYYQLHDYDMCIARNEEALRLEPRFA 67
           YK+  + +A+EH N  +E +    D   L    A  Y+  +Y+  I+   +A+       
Sbjct: 16  YKARQFDEAIEHYNKAWELHK---DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR 72

Query: 68  ECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQA 127
             Y  ++ ++   G+    +      IE            A    +     +  +     
Sbjct: 73  ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSL-TEHRTADILTKLRNAEKELKKAEAE 131

Query: 128 LALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNR 187
             +NP   +     G     +     A   Y E ++  P  A  +SN A    +      
Sbjct: 132 AYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPE 191

Query: 188 ALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYY 247
           A+    +A++  P F  AY+       A+     A+     A            + +   
Sbjct: 192 AIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDA------EVNNGSS 245

Query: 248 ERGQADMAILYYKQA 262
            R    +  LYYK +
Sbjct: 246 ARE---IDQLYYKAS 257

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score =  229 bits (585), Expect = 6e-69
 Identities = 44/267 (16%), Positives = 88/267 (32%), Gaps = 11/267 (4%)

Query: 38  LLGAIYYQLHDYDMCIARNEEALR----LEPRFAECYGNMANAWKEKGDIDLAIRYYLVA 93
           +L          ++ +AR E+ L      +   A+        +   G   LA   +  A
Sbjct: 10  VLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQA 69

Query: 94  IELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQE 153
           + +RP+  + ++ L     + G  + A +     L L+P    AH N G  +   G  + 
Sbjct: 70  LAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKL 129

Query: 154 AYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL----KPTFPDAYLNL 209
           A    L   +  P        L  L  +  D  +A +  K+  +     +  +      L
Sbjct: 130 AQDDLLAFYQDDPNDPFRSLWL-YLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYL 188

Query: 210 GNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPR 268
           GN+ +   + +              + +     L   Y   G  D A   +K A+  +  
Sbjct: 189 GNISE-QTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 247

Query: 269 FLEAYNNLGNALKDVGRVDEAIQCYNQ 295
               +      L  +G+  + +   +Q
Sbjct: 248 NFVEHRYALLELSLLGQDQDDLAESDQ 274

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score =  212 bits (541), Expect = 1e-62
 Identities = 38/268 (14%), Positives = 68/268 (25%), Gaps = 11/268 (4%)

Query: 70  YGNMANAWKEKGDIDLAIRYYLVAIELR----PNFADAWSNLASAYMRKGRLNEAAQCCR 125
              +A   +     ++ +      +  R       A         Y   G    A     
Sbjct: 8   SEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFS 67

Query: 126 QALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDL 185
           QALA+ P + +  + LG  +   G    AY  +   L + PT+  A  N        G  
Sbjct: 68  QALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRD 127

Query: 186 NRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-----AIAFG 240
             A        +  P  P   L L    + L   ++A    ++  +          I   
Sbjct: 128 KLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLD-EKQAKEVLKQHFEKSDKEQWGWNIVEF 186

Query: 241 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300
            L     E+   +                 E    LG     +G +D A   +   ++  
Sbjct: 187 YLG-NISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245

Query: 301 PSHPQALTNLGNIYMEWNMLPAAASYYK 328
             +                     +   
Sbjct: 246 VHNFVEHRYALLELSLLGQDQDDLAESD 273

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score =  211 bits (539), Expect = 2e-62
 Identities = 42/263 (15%), Positives = 72/263 (27%), Gaps = 7/263 (2%)

Query: 174 NLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR 233
            L     +   L R  Q                   G +Y +LG+   A   + +A+  R
Sbjct: 14  PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR 73

Query: 234 PN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQC 292
           P+    F  L     + G  D A   +   +  DP +  A+ N G AL   GR   A   
Sbjct: 74  PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDD 133

Query: 293 YNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIY---- 348
                   P+ P     L     + +   A     +              N+   Y    
Sbjct: 134 LLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK--EQWGWNIVEFYLGNI 191

Query: 349 KQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEA 408
            +Q       +   +   +    ++     G  Y  +G +  A   +  A+         
Sbjct: 192 SEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251

Query: 409 HANLASAYKDSGHVEAAIKSYKQ 431
           H          G  +  +    Q
Sbjct: 252 HRYALLELSLLGQDQDDLAESDQ 274

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score =  187 bits (476), Expect = 1e-53
 Identities = 39/255 (15%), Positives = 70/255 (27%), Gaps = 9/255 (3%)

Query: 205 AYLNLGNVYKALGMPQEAIMCYQRAVQTRP-----NAIAFGNLASTYYERGQADMAILYY 259
               L    +     +  +   ++ + +R       A         Y   G   +A   +
Sbjct: 7   KSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDF 66

Query: 260 KQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNM 319
            QA+   P   E +N LG  L   G  D A + ++  L L P++  A  N G        
Sbjct: 67  SQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR 126

Query: 320 LPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRG 379
              A     A              L +  ++      A     +          G     
Sbjct: 127 DKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEK-QAKEVLKQHFEKSDKEQWGWNIVE 185

Query: 380 N---TYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLR 436
                  E   +     D     ++   ++E +  L   Y   G +++A   +K A+   
Sbjct: 186 FYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245

Query: 437 PDFPEATCNLLHTLQ 451
                     L  L 
Sbjct: 246 VHNFVEHRYALLELS 260

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score =  130 bits (329), Expect = 8e-34
 Identities = 36/184 (19%), Positives = 58/184 (31%), Gaps = 5/184 (2%)

Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLS----LQPSHPQALTNLGNIYMEWNMLPAAASY 326
                L   L+   + +  +    Q L+          Q L   G +Y    +   A + 
Sbjct: 6   RKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARND 65

Query: 327 YKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIG 386
           +   LA+   +   FN L +   Q GN+  A   ++ VL +DP      +NRG      G
Sbjct: 66  FSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGG 125

Query: 387 RVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
           R   A  D +      P        L  A +     + A +  KQ              +
Sbjct: 126 RDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDE-KQAKEVLKQHFEKSDKEQWGWNIV 184

Query: 447 LHTL 450
              L
Sbjct: 185 EFYL 188

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score =  224 bits (573), Expect = 3e-67
 Identities = 40/265 (15%), Positives = 85/265 (32%), Gaps = 15/265 (5%)

Query: 67  AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEA---AQC 123
            +     A+   +  +   AI  +      + N    ++  A  Y    + + A    + 
Sbjct: 3   DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIET 62

Query: 124 CRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESG 183
               +             G ++  +G    A   Y  A+    T    +  +   F   G
Sbjct: 63  YFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKG 122

Query: 184 DLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNL 242
           +   A+QY ++ ++   T P  +  LG  Y       +A   + + ++ +PN  I +   
Sbjct: 123 NFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWR 182

Query: 243 ASTYYERGQA---DMAILYYKQAI--------GCDPRFLEAYNNLGNALKDVGRVDEAIQ 291
           A     +       +A  YY++ I              +EA   +           +A  
Sbjct: 183 ARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242

Query: 292 CYNQCLSLQPSHPQALTNLGNIYME 316
            +   L+L P++ +A+  L      
Sbjct: 243 AWKNILALDPTNKKAIDGLKMKLEH 267

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score =  215 bits (551), Expect = 4e-64
 Identities = 38/294 (12%), Positives = 76/294 (25%), Gaps = 33/294 (11%)

Query: 101 ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEA---YSC 157
            D     A    +     EA +   +  A        ++              A      
Sbjct: 3   DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIET 62

Query: 158 YLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG 217
           Y   +      +  +     + M+ G  + A+Q Y+ AV    T  D Y  +G+ +   G
Sbjct: 63  YFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKG 122

Query: 218 MPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNL 276
               AI   ++ ++        F  L   YY   +   A   + + +   P     Y   
Sbjct: 123 NFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWR 182

Query: 277 GNA---LKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAV 333
             A        +   A   Y + + +         +                  +A    
Sbjct: 183 ARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKD---------------ELIEA---- 223

Query: 334 TTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGR 387
                     +A  Y    +   A + +  +L +DP     +       +    
Sbjct: 224 -------NEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHH 270

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score =  213 bits (545), Expect = 2e-63
 Identities = 41/304 (13%), Positives = 77/304 (25%), Gaps = 46/304 (15%)

Query: 130 LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRAL 189
           +N    D      + +       EA   + +    +      ++  A  + E    + A 
Sbjct: 1   MND---DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQ 57

Query: 190 QY---YKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLAST 245
           +    Y   V         +   G +    G    AI  YQ AV         +G + S 
Sbjct: 58  KDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSY 117

Query: 246 YYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQ 305
           +Y +G   +AI Y ++ I       + +  LG A        +A   + + L L+P+   
Sbjct: 118 FYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYI 177

Query: 306 ALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVL 365
                                                              A   Y +++
Sbjct: 178 GYLWRARANAA-------------------------------QDPDTKQGLAKPYYEKLI 206

Query: 366 RIDPLAADGLV--------NRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYK 417
            +                      Y        A   +   + + PT  +A   L    +
Sbjct: 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266

Query: 418 DSGH 421
              H
Sbjct: 267 HHHH 270

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score =  212 bits (543), Expect = 5e-63
 Identities = 52/264 (19%), Positives = 83/264 (31%), Gaps = 15/264 (5%)

Query: 203 PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILY--- 258
            D      +         EAI  + +    + N    +   A  YYE  + D+A      
Sbjct: 3   DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIET 62

Query: 259 YKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWN 318
           Y   +         +   G  L   G+   AIQ Y   +    +       +G+ +    
Sbjct: 63  YFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKG 122

Query: 319 MLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNR 378
             P A  Y +  +  TT     F  L   Y     Y  A S + +VL + P    G + R
Sbjct: 123 NFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWR 182

Query: 379 GNTYKEIGRVTD---AIQDYIRAITIRPT--------MAEAHANLASAYKDSGHVEAAIK 427
                     T    A   Y + I +           + EA+  +A  Y  +     A  
Sbjct: 183 ARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242

Query: 428 SYKQALLLRPDFPEATCNLLHTLQ 451
           ++K  L L P   +A   L   L+
Sbjct: 243 AWKNILALDPTNKKAIDGLKMKLE 266

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score =  169 bits (431), Expect = 1e-47
 Identities = 29/214 (13%), Positives = 62/214 (28%), Gaps = 6/214 (2%)

Query: 235 NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAI---Q 291
           N       A   ++      AI  + +           YN       ++ + D A    +
Sbjct: 2   NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE 61

Query: 292 CYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQ 351
            Y   ++   +        G I M+      A   Y+A +   T     +  +   +  +
Sbjct: 62  TYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNK 121

Query: 352 GNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHAN 411
           GN+  AI    + +R            G  Y        A   +++ + ++P +   +  
Sbjct: 122 GNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLW 181

Query: 412 LASAYKDSGHV---EAAIKSYKQALLLRPDFPEA 442
            A A            A   Y++ + +       
Sbjct: 182 RARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAK 215

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score =  163 bits (416), Expect = 2e-45
 Identities = 37/225 (16%), Positives = 71/225 (31%), Gaps = 14/225 (6%)

Query: 10  YKSGSYKQALEHSNSVY---ERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF 66
           Y+   Y  A +   + +        ++ +    G I  +     + I + + A+  +   
Sbjct: 48  YELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTR 107

Query: 67  AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQ 126
            + YG + + +  KG+  LAI+Y    I         +  L  AY       +A     +
Sbjct: 108 LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVK 167

Query: 127 ALALNPLLVDAHSNLGNLMKAQGLV---QEAYSCYLEALRIQPT--------FAIAWSNL 175
            L L P +   +        AQ        A   Y + + +              A   +
Sbjct: 168 VLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYI 227

Query: 176 AGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQ 220
           A  +  + D  +A   +K  + L PT   A   L    +      
Sbjct: 228 AYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHHHH 272

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score =  221 bits (565), Expect = 7e-67
 Identities = 44/228 (19%), Positives = 81/228 (35%), Gaps = 23/228 (10%)

Query: 66  FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCR 125
             +    +       G  D A+  +  A++  P   +A   LA   ++ G +N A +  +
Sbjct: 4   AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGK 63

Query: 126 QALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDL 185
             +A  P  +  +  L                          +   +          G L
Sbjct: 64  TLVARTPRYLGGYMVLSE-----------------------AYVALYRQAEDRERGKGYL 100

Query: 186 NRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLAST 245
            +AL   K+A ++ P +   +L  G VY  LG   +A    ++A+           LA  
Sbjct: 101 EQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAEL 160

Query: 246 YYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 293
           Y   G+ D A+  Y +A+   P+ L+      +AL   G+ +EA +  
Sbjct: 161 YLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAA 208

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score =  207 bits (529), Expect = 8e-62
 Identities = 48/214 (22%), Positives = 80/214 (37%), Gaps = 12/214 (5%)

Query: 33  TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLV 92
             N L LG   Y L  YD  +   E AL+  P+  E    +A    + G ++ A+     
Sbjct: 5   EQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKT 64

Query: 93  AIELRPNFADAWSNLASAYM-----------RKGRLNEAAQCCRQALALNPLLVDAHSNL 141
            +   P +   +  L+ AY+            KG L +A    + A  +NP     H   
Sbjct: 65  LVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQR 124

Query: 142 GNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPT 201
           G +    G   +A +   +AL ++       S LA L++  G L+ AL  Y +A++  P 
Sbjct: 125 GLVYALLGERDKAEASLKQALALED-TPEIRSALAELYLSMGRLDEALAQYAKALEQAPK 183

Query: 202 FPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
             D  +   +     G  +EA            +
Sbjct: 184 DLDLRVRYASALLLKGKAEEAARAAALEHHHHHH 217

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score =  206 bits (527), Expect = 2e-61
 Identities = 45/246 (18%), Positives = 77/246 (31%), Gaps = 47/246 (19%)

Query: 200 PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILY 258
            T     L LG    ALG    A+  ++RA++  P    A   LA T  + G  + A+  
Sbjct: 2   QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALEN 61

Query: 259 YKQAIGCDPRFLEAYNNLGNALKDV-----------GRVDEAIQCYNQCLSLQPSHPQAL 307
            K  +   PR+L  Y  L  A   +           G +++A+        + P +    
Sbjct: 62  GKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLH 121

Query: 308 TNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI 367
              G +Y                                     G    A +   + L +
Sbjct: 122 LQRGLVY----------------------------------ALLGERDKAEASLKQALAL 147

Query: 368 DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIK 427
           +    +        Y  +GR+ +A+  Y +A+   P   +     ASA    G  E A +
Sbjct: 148 ED-TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAAR 206

Query: 428 SYKQAL 433
           +     
Sbjct: 207 AAALEH 212

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score =  198 bits (507), Expect = 9e-59
 Identities = 48/268 (17%), Positives = 79/268 (29%), Gaps = 57/268 (21%)

Query: 136 DAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEA 195
                LG  + A G    A + +  AL+  P    A   LA   ++ G +N AL+  K  
Sbjct: 6   QNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTL 65

Query: 196 VKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMA 255
           V   P +   Y+ L   Y AL                                +G  + A
Sbjct: 66  VARTPRYLGGYMVLSEAYVALYR----------------------QAEDRERGKGYLEQA 103

Query: 256 ILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM 315
           +   K A   +PR+   +   G     +G  D+A     Q L+L+   P+  + L  +Y 
Sbjct: 104 LSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALED-TPEIRSALAELY- 161

Query: 316 EWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGL 375
                                               G   +A++ Y + L   P   D  
Sbjct: 162 ---------------------------------LSMGRLDEALAQYAKALEQAPKDLDLR 188

Query: 376 VNRGNTYKEIGRVTDAIQDYIRAITIRP 403
           V   +     G+  +A +          
Sbjct: 189 VRYASALLLKGKAEEAARAAALEHHHHH 216

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score =  220 bits (563), Expect = 4e-66
 Identities = 49/240 (20%), Positives = 86/240 (35%), Gaps = 4/240 (1%)

Query: 70  YGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALA 129
           + + ++    +G         L   + R    DA+  L   Y+++G   +A    R+AL 
Sbjct: 7   HHHHSSGLVPRGSHMGDQNP-LKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALE 65

Query: 130 LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRAL 189
           ++P   DAH+ L  + + +   + A   Y +AL      A   +N  G   E      A 
Sbjct: 66  IDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAY 125

Query: 190 QYYKEAVK--LKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTY 246
           Q   EA +  L P     + NLG V   +  P +A   ++++++   N       +A   
Sbjct: 126 QRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLL 185

Query: 247 YERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQA 306
           Y+  +   A  YY        +   +        K     D A     Q   L P   + 
Sbjct: 186 YKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score =  210 bits (536), Expect = 3e-62
 Identities = 42/280 (15%), Positives = 91/280 (32%), Gaps = 38/280 (13%)

Query: 137 AHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAV 196
            H +  + +  +G         L+  + +     A+  L   +++ G+  +A    ++A+
Sbjct: 6   HHHHHSSGLVPRGSHMGD-QNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKAL 64

Query: 197 KLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMA 255
           ++ P+  DA+  L  V++    P+ A   Y++A+ +    A    N     YE+ + + A
Sbjct: 65  EIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEA 124

Query: 256 ILYYKQAIGC--DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNI 313
                +A      P     + NLG     + +  +A + + + L L  + P         
Sbjct: 125 YQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVA------ 178

Query: 314 YMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAAD 373
                                         +A +  ++  Y  A   Y+   +     A 
Sbjct: 179 ----------------------------LEMADLLYKEREYVPARQYYDLFAQGGGQNAR 210

Query: 374 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLA 413
            L+      K       A    ++   + P   E     A
Sbjct: 211 SLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQA 250

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score =  204 bits (520), Expect = 4e-60
 Identities = 43/248 (17%), Positives = 77/248 (31%), Gaps = 6/248 (2%)

Query: 198 LKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAI 256
           +  +    + + G V +   M  +      +  + R     A+  L   Y +RG  + A 
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMGDQN---PLKTDKGRDEARDAYIQLGLGYLQRGNTEQAK 57

Query: 257 LYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYME 316
           +  ++A+  DP   +A+  L    +       A + Y + L+    + + L N G    E
Sbjct: 58  VPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYE 117

Query: 317 WNMLPAAASYYKATLAVT--TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADG 374
                 A          T     S  F NL ++  Q    A A   + + LR++      
Sbjct: 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSV 177

Query: 375 LVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALL 434
            +   +   +      A Q Y          A +        K     + A     Q   
Sbjct: 178 ALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237

Query: 435 LRPDFPEA 442
           L P   E 
Sbjct: 238 LYPGSLEY 245

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score =  189 bits (481), Expect = 1e-54
 Identities = 38/200 (19%), Positives = 69/200 (34%), Gaps = 2/200 (1%)

Query: 39  LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP 98
           LG  Y Q  + +       +AL ++P  A+ +  +A  ++ + +  LA   Y  A+    
Sbjct: 43  LGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS 102

Query: 99  NFADAWSNLASAYMRKGRLNEAAQCCRQALA--LNPLLVDAHSNLGNLMKAQGLVQEAYS 156
             A   +N       + R  EA Q   +A    L P       NLG +        +A  
Sbjct: 103 RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKE 162

Query: 157 CYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKAL 216
            + ++LR+          +A L  +  +   A QYY    +       + L    + K  
Sbjct: 163 YFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVF 222

Query: 217 GMPQEAIMCYQRAVQTRPNA 236
                A     +  +  P +
Sbjct: 223 EDRDTAASYGLQLKRLYPGS 242

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score =  121 bits (305), Expect = 6e-31
 Identities = 32/178 (17%), Positives = 49/178 (27%), Gaps = 2/178 (1%)

Query: 2   HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
           H ALA         K A E        +      L   G   Y+   Y+    R  EA +
Sbjct: 74  HAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ 133

Query: 62  --LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNE 119
             L P  +  + N+     +      A  Y+  ++ L  N       +A    ++     
Sbjct: 134 DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVP 193

Query: 120 AAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAG 177
           A Q              +      L K       A S  L+  R+ P         A 
Sbjct: 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQAE 251

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 93.9 bits (234), Expect = 2e-21
 Identities = 20/105 (19%), Positives = 39/105 (37%), Gaps = 3/105 (2%)

Query: 342 NNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI 401
           ++  ++ +             +  +    A D  +  G  Y + G    A     +A+ I
Sbjct: 10  HSSGLVPRGSHMGDQN---PLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEI 66

Query: 402 RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
            P+ A+AHA LA  ++     + A + Y++AL           N 
Sbjct: 67  DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNY 111

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score =  217 bits (553), Expect = 4e-62
 Identities = 62/374 (16%), Positives = 127/374 (33%), Gaps = 48/374 (12%)

Query: 2   HMAL---AHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEE 58
           HMA      QM +        E +  V ++     D L      Y++ H  +    + ++
Sbjct: 20  HMASMTGGQQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQD 79

Query: 59  ALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLN 118
                                + +++  ++     +      A A      A       +
Sbjct: 80  V--------------------QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYS 119

Query: 119 -EAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAG 177
            EA     +A+ L P LV+A + LG +   +G V  A++C+  AL       ++  NL+ 
Sbjct: 120 PEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSM 178

Query: 178 LFMESG---------DLNRALQYYKEAVKLKPTFPDAYLNLGNVY--------KALGMPQ 220
           +  +            +  +++  K AV++      ++  LGN Y        +   + Q
Sbjct: 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238

Query: 221 EAIMCYQRAVQTRP----NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNL 276
           +A+  Y +A +       N     N A+ +        A+  + QA   DP + E     
Sbjct: 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQRE 298

Query: 277 GNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTT- 335
              L+ + R+   ++   +    +           ++    +    +AS  K TL +   
Sbjct: 299 QQLLEFLSRLTSLLESKGKTKPKKLQSMLGSLRPAHLGPCGDGRYQSASGQKMTLELKPL 358

Query: 336 -GLSAPFNNLAVIY 348
             L    N+  V+ 
Sbjct: 359 STLQPGVNSGTVVL 372

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score =  179 bits (455), Expect = 7e-49
 Identities = 63/419 (15%), Positives = 123/419 (29%), Gaps = 66/419 (15%)

Query: 181 ESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMP-------QEAIMCYQRAVQTR 233
           E  +    LQ  +  V     F D+Y    +V  A           ++ +   +  + + 
Sbjct: 39  EEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSA 98

Query: 234 PN-AIAFGNLASTYYERGQADM-AILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQ 291
              A A                 A +   +A+  +P  +EA+N LG      G V  A  
Sbjct: 99  QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHT 158

Query: 292 CYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQ 351
           C++  L+   +   +L NL  +  +                                +  
Sbjct: 159 CFSGALTHCKNKV-SLQNLSMVLRQLQTDSG-------------------------DEHS 192

Query: 352 GNYADAISCYNEVLRIDPLAADGLVNRGNTY--------KEIGRVTDAIQDYIRAITIRP 403
            +  D++      +++D L        GN Y        +       A+  Y +A  +  
Sbjct: 193 RHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR 252

Query: 404 TM---AEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRD 460
                 + H N A+ +K       A++ + QA  L P +PE        L+ +       
Sbjct: 253 KASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLL 312

Query: 461 RMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPF 520
               +     + +   S+L S++P H    P         S +  +      S    P  
Sbjct: 313 ESKGK----TKPKKLQSMLGSLRPAH--LGPCGDGRYQSASGQKMTLELKPLSTLQ-PGV 365

Query: 521 NHPVPIPIRLDGGLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDG 579
           N    +           +V +  +     P +  +       +     V  Y +  + G
Sbjct: 366 NSGTVV---------LGKVVFSLTTEEKVPFTFGLVD----SDGPCYAVMVYNVVQSWG 411

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score =  163 bits (414), Expect = 3e-43
 Identities = 50/328 (15%), Positives = 105/328 (32%), Gaps = 29/328 (8%)

Query: 15  YKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDM-CIARNEEALRLEPRFAECYGNM 73
            ++ L+    V     +    L+L G       DY         +A++LEP   E +  +
Sbjct: 84  MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQL 143

Query: 74  ANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM---------RKGRLNEAAQCC 124
              + +KGD+  A   +  A+    N   +  NL+                 + ++ +  
Sbjct: 144 GEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQA 202

Query: 125 RQALALNPLLVDAHSNLGN--------LMKAQGLVQEAYSCYLEALRIQ---PTFAIAWS 173
           + A+ ++ L   +   LGN          +   + Q+A S Y +A ++     +      
Sbjct: 203 KLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHL 262

Query: 174 NLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR 233
           N A L         AL+ + +A  L P +P+       + + L      +    +    +
Sbjct: 263 NRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKPKK 322

Query: 234 PNAIA-------FGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRV 286
             ++         G      Y+        L  K      P        LG  +  +   
Sbjct: 323 LQSMLGSLRPAHLGPCGDGRYQSASGQKMTLELKPLSTLQPGVNSGTVVLGKVVFSLTTE 382

Query: 287 DEAIQCYNQCLSLQPSHPQALTNLGNIY 314
           ++    +    S  P +   + N+   +
Sbjct: 383 EKVPFTFGLVDSDGPCYAVMVYNVVQSW 410

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 78.1 bits (192), Expect = 4e-15
 Identities = 26/208 (12%), Positives = 47/208 (22%), Gaps = 10/208 (4%)

Query: 14  SYKQALE----HSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAEC 69
             K A++       S Y             G             A+ E+  R      + 
Sbjct: 201 QAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDL 260

Query: 70  YGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALA 129
           + N A   K +     A+  +  A  L P + +             RL    +   +   
Sbjct: 261 HLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKP 320

Query: 130 ------LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESG 183
                 L  L        G+        Q+          +QP        L  +     
Sbjct: 321 KKLQSMLGSLRPAHLGPCGDGRYQSASGQKMTLELKPLSTLQPGVNSGTVVLGKVVFSLT 380

Query: 184 DLNRALQYYKEAVKLKPTFPDAYLNLGN 211
              +    +       P +     N+  
Sbjct: 381 TEEKVPFTFGLVDSDGPCYAVMVYNVVQ 408

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score =  192 bits (490), Expect = 9e-57
 Identities = 28/184 (15%), Positives = 64/184 (34%), Gaps = 1/184 (0%)

Query: 60  LRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNE 119
           +  +      Y +   +  + G    A+       +      D   +L  AY++ G ++ 
Sbjct: 1   MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDR 60

Query: 120 AAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLF 179
             +   ++LA  P  V   + LG           A    ++     P        L    
Sbjct: 61  GTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVAL 120

Query: 180 MESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIA 238
              G  + A+  +K A+ L+P     +  +   Y+ +G  +EA+  +++A +     ++ 
Sbjct: 121 DNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE 180

Query: 239 FGNL 242
              +
Sbjct: 181 LALV 184

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score =  185 bits (472), Expect = 3e-54
 Identities = 38/208 (18%), Positives = 73/208 (35%), Gaps = 34/208 (16%)

Query: 235 NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 294
             + + +   ++ + G+   A++  +Q    D   ++   +LG A    G VD   +   
Sbjct: 7   RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLE 66

Query: 295 QCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNY 354
           + L+  P + +  T LG  Y                                   Q   Y
Sbjct: 67  RSLADAPDNVKVATVLGLTY----------------------------------VQVQKY 92

Query: 355 ADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLAS 414
             A+    +V   +P+  +     G     +GR  +AI  +  A+ +RP   + H  +A 
Sbjct: 93  DLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAF 152

Query: 415 AYKDSGHVEAAIKSYKQALLLRPDFPEA 442
           +Y+  G  E A+  +K+A  L       
Sbjct: 153 SYEQMGRHEEALPHFKKANELDEGASVE 180

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score =  176 bits (450), Expect = 3e-51
 Identities = 30/176 (17%), Positives = 65/176 (36%), Gaps = 3/176 (1%)

Query: 39  LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP 98
            G  + +   Y   +   E+    +    +   ++  A+ + G +D        ++   P
Sbjct: 14  KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP 73

Query: 99  NFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCY 158
           +     + L   Y++  + + A     +    NP+  +    LG  +   G   EA   +
Sbjct: 74  DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSF 133

Query: 159 LEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYK 214
             AL ++P        +A  + + G    AL ++K+A +L      A + L  V +
Sbjct: 134 KIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD---EGASVELALVPR 186

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score =  155 bits (395), Expect = 1e-43
 Identities = 32/189 (16%), Positives = 52/189 (27%), Gaps = 34/189 (17%)

Query: 263 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPA 322
           +G D      Y + G +    GR  +A+    Q             +LG  Y        
Sbjct: 1   MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAY-------- 52

Query: 323 AASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTY 382
                                      + G            L   P         G TY
Sbjct: 53  --------------------------VKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86

Query: 383 KEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 442
            ++ +   A+   I+     P        L  A  + G  + AI S+K AL LRP+  + 
Sbjct: 87  VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKV 146

Query: 443 TCNLLHTLQ 451
              +  + +
Sbjct: 147 HRAIAFSYE 155

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score =  198 bits (505), Expect = 4e-56
 Identities = 73/391 (18%), Positives = 127/391 (32%), Gaps = 86/391 (21%)

Query: 35  NLLLLGAIYYQLHDYDMCIARNEEALRL------EPRFAECYGNMANAWKEKGDIDLAIR 88
           +          L         ++   +                         GD    + 
Sbjct: 10  SASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVA 69

Query: 89  YYLVAIEL----RPNFADAWSNLASAYMRKGRLNEAAQCCRQALALN------PLLVDAH 138
           ++  AI+         +  +S L +AY   G  N+A Q  +  L L            + 
Sbjct: 70  FFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129

Query: 139 SNLGNLMKAQGLVQEAYSCYLEALRI------QPTFAIAWSNLAGLFMESGD-------- 184
            NLGN +K  G   EA  C    L +      + +   A  NL  ++   G         
Sbjct: 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPG 189

Query: 185 ---------LNRALQYYKEAVKLKPTFPD------AYLNLGNVYKALGMPQEAIMCYQRA 229
                    L RA+++Y+E +KL     D      A  NLGN Y  LG  Q AI  +Q  
Sbjct: 190 KFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQER 249

Query: 230 VQ-------TRPNAIAFGNLASTYYERGQADMAILYYKQA------IGCDPRFLEAYNNL 276
           ++             A  NL +++   GQ + A  +YK+       +G      ++  +L
Sbjct: 250 LRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSL 309

Query: 277 GNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTG 336
           GN    +   + AI+ +N+ L++          LG+   E      A +           
Sbjct: 310 GNTYTLLHEFNTAIEYHNRHLAIAQE-------LGDRIGE------ARAC---------- 346

Query: 337 LSAPFNNLAVIYKQQGNYADAISCYNEVLRI 367
                 +L   +   G +  A+    + L++
Sbjct: 347 -----WSLGNAHSAIGGHERALKYAEQHLQL 372

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score =  197 bits (503), Expect = 8e-56
 Identities = 71/402 (17%), Positives = 118/402 (29%), Gaps = 84/402 (20%)

Query: 72  NMANAWKEKGDIDLAIRYYLVAIEL------RPNFADAWSNLASAYMRKGRLNEAAQCCR 125
               +    G        +    +         +     +         G         +
Sbjct: 13  AENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQ 72

Query: 126 QALALN----PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI------QPTFAIAWSNL 175
            A+         L   +S LGN     G   +A   +   L +      +   A +  NL
Sbjct: 73  AAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132

Query: 176 AGLFMESGDLNRALQYYKEAVKLKPTFPD------AYLNLGNVYKALGMPQEAIMCYQRA 229
                  G  + A    +  + L     D      A  NLGNVY A G         +  
Sbjct: 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFG 192

Query: 230 VQTRPNAIAFGNLASTYYERGQADMAILYYKQA------IGCDPRFLEAYNNLGNALKDV 283
              +                     A+ +Y++       +G       A  NLGN    +
Sbjct: 193 DDVK----------------EALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLL 236

Query: 284 GRVDEAIQCYNQCLSL------QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT--- 334
           G    AI+ + + L +      + +  +A +NLGN ++       AA +YK TLA+    
Sbjct: 237 GDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL 296

Query: 335 ---TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDA 391
                 +    +L   Y     +  AI  +N  L I               +E+G     
Sbjct: 297 GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI--------------AQELGD---- 338

Query: 392 IQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQAL 433
                     R   A A  +L +A+   G  E A+K  +Q L
Sbjct: 339 ----------RIGEARACWSLGNAHSAIGGHERALKYAEQHL 370

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score =  172 bits (438), Expect = 4e-47
 Identities = 59/352 (16%), Positives = 113/352 (32%), Gaps = 82/352 (23%)

Query: 137 AHSNLGNLMKAQGLVQEAYSCYLEALRI------QPTFAIAWSNLAGLFMESGDLNRALQ 190
           +  N+ +L    G      + +    +         +  +  +        +GD    + 
Sbjct: 12  SAENVSSL--GLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVA 69

Query: 191 YYKEAVKLK----PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-------AIAF 239
           +++ A++       T    Y  LGN Y  LG   +A+  ++  +    +       A + 
Sbjct: 70  FFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129

Query: 240 GNLASTYYERGQADMAILYYKQA------IGCDPRFLEAYNNLGNALKDVGR-------- 285
           GNL +T    G+ D A +  ++       +G       A  NLGN     G+        
Sbjct: 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPG 189

Query: 286 ---------VDEAIQCYNQCLSL------QPSHPQALTNLGNIYMEWNMLPAAASYYKAT 330
                    +  A++ Y + L L      + +  +A  NLGN Y       AA  +++  
Sbjct: 190 KFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQER 249

Query: 331 LAVT------TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKE 384
           L +              +NL   +   G + DA   Y   L +                E
Sbjct: 250 LRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL--------------AVE 295

Query: 385 IGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLR 436
           +G               R   A++  +L + Y        AI+ + + L + 
Sbjct: 296 LGE--------------REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA 333

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score =  141 bits (358), Expect = 2e-36
 Identities = 52/284 (18%), Positives = 87/284 (30%), Gaps = 52/284 (18%)

Query: 205 AYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-------AIAFGNLASTYYERGQADMAIL 257
           +          LG        +    Q            +            G     + 
Sbjct: 10  SASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVA 69

Query: 258 YYKQAI----GCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS---HP---QAL 307
           +++ AI             Y+ LGNA   +G  ++A+Q +   L+L  S        ++ 
Sbjct: 70  FFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129

Query: 308 TNLGNIYMEWNMLPAAASYYKATLAVT------TGLSAPFNNLAVIYKQQGNYAD----- 356
            NLGN          AA   +  L +               NL  +Y  +G +       
Sbjct: 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPG 189

Query: 357 ------------AISCYNEVLRID------PLAADGLVNRGNTYKEIGRVTDAIQDYIRA 398
                       A+  Y E L++               N GNTY  +G    AI+ +   
Sbjct: 190 KFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQER 249

Query: 399 ITI------RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLR 436
           + I      R     A++NL +++   G  E A + YK+ L L 
Sbjct: 250 LRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA 293

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score =  104 bits (262), Expect = 5e-24
 Identities = 33/235 (14%), Positives = 59/235 (25%), Gaps = 48/235 (20%)

Query: 235 NAIAFGNLASTYYERGQADMAILYYKQA------IGCDPRFLEAYNNLGNALKDVGRVDE 288
           ++++      +    G        +                       G  L + G    
Sbjct: 7   SSLSASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRA 66

Query: 289 AIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIY 348
            +  +   +       + L               +A Y               + L   Y
Sbjct: 67  GVAFFQAAIQAGTEDLRTL---------------SAIY---------------SQLGNAY 96

Query: 349 KQQGNYADAISCYNEVLRI------DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI- 401
              G+Y  A+  +   L +          A    N GNT K +GR  +A     R +T+ 
Sbjct: 97  FYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLA 156

Query: 402 -----RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 451
                R +   A  NL + Y   G         K    ++     A       L+
Sbjct: 157 RQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score =  189 bits (481), Expect = 4e-55
 Identities = 48/216 (22%), Positives = 77/216 (35%), Gaps = 6/216 (2%)

Query: 95  ELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEA 154
           E     ++  + LA  YMR     +A      AL  +P    A      + +   +  +A
Sbjct: 2   EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKA 61

Query: 155 YSCYLEALRIQPTFAIAWSNLAG-LFMESGDLNRALQYYKEAVK--LKPTFPDAYLNLGN 211
              + +AL I+P  A   +N    L         ++ Y+ +A+     PT   A LN G 
Sbjct: 62  QESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGI 121

Query: 212 VYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFL 270
                G    A    +R++  +P    AF  LA T    GQ   A  Y+K+         
Sbjct: 122 CSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVL- 180

Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQA 306
              ++L    K    +  A   Y     LQ + P +
Sbjct: 181 -QADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYS 215

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score =  176 bits (448), Expect = 2e-50
 Identities = 39/217 (17%), Positives = 74/217 (34%), Gaps = 5/217 (2%)

Query: 229 AVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDE 288
           A +    +     LA  Y        A    + A+  DP+   A+       + +   D+
Sbjct: 1   AEKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDK 60

Query: 289 AIQCYNQCLSLQPSHPQALTNLGNI-YMEWNMLPAAASYYKATLAVTT--GLSAPFNNLA 345
           A + + Q LS++P   +   N G       N    + +Y+   LA  T         N  
Sbjct: 61  AQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKG 120

Query: 346 VIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM 405
           +   +QG +  A +     L   P           T    G++ DA   + +  +    +
Sbjct: 121 ICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVL 180

Query: 406 AEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 442
                 L   +K +  +  A  +Y+    L+ +FP +
Sbjct: 181 QADDLLL--GWKIAKALGNAQAAYEYEAQLQANFPYS 215

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score =  167 bits (425), Expect = 2e-47
 Identities = 50/200 (25%), Positives = 77/200 (38%), Gaps = 5/200 (2%)

Query: 39  LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP 98
           L   Y +  DY    A  E+AL+ +P+    +   A  ++     D A   +  A+ ++P
Sbjct: 14  LAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP 73

Query: 99  NFADAWSNLASA-YMRKGRLNEAAQCCRQALA--LNPLLVDAHSNLGNLMKAQGLVQEAY 155
           + A+  +N       R  R  E+     +ALA    P    A+ N G     QG    A 
Sbjct: 74  DSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAE 133

Query: 156 SCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKA 215
           +    +L  QP F  A+  LA   M +G L  A  Y+K+            L LG  +K 
Sbjct: 134 AYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLG--WKI 191

Query: 216 LGMPQEAIMCYQRAVQTRPN 235
                 A   Y+   Q + N
Sbjct: 192 AKALGNAQAAYEYEAQLQAN 211

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score =  164 bits (418), Expect = 2e-46
 Identities = 39/252 (15%), Positives = 76/252 (30%), Gaps = 40/252 (15%)

Query: 166 PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMC 225
              +   + LA  +M   D  +A    ++A+K  P    A+L    +Y+ L +  +A   
Sbjct: 5   NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQES 64

Query: 226 YQRAVQTRPN-AIAFGNLASTYYER-GQADMAILYYKQAIGCD--PRFLEAYNNLGNALK 281
           +++A+  +P+ A    N       R  +   ++ Y+ +A+     P    A  N G    
Sbjct: 65  FRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSA 124

Query: 282 DVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPF 341
             G+   A     + L+ QP  P A   L    M                          
Sbjct: 125 KQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKML------------------------- 159

Query: 342 NNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI 401
                     G   DA   + +      +      +    +K    + +A   Y     +
Sbjct: 160 ---------AGQLGDADYYFKKYQSRVEVLQA--DDLLLGWKIAKALGNAQAAYEYEAQL 208

Query: 402 RPTMAEAHANLA 413
           +     +     
Sbjct: 209 QANFPYSEELQT 220

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 98.1 bits (245), Expect = 3e-23
 Identities = 31/174 (17%), Positives = 56/174 (32%), Gaps = 5/174 (2%)

Query: 2   HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYY-QLHDYDMCIARNEEAL 60
            +  A          +A E         P   +     G     +L+     +A  ++AL
Sbjct: 45  WLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKAL 104

Query: 61  R--LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLN 118
                P       N      ++G   LA  Y   ++  +P F  A+  LA   M  G+L 
Sbjct: 105 ADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164

Query: 119 EAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAW 172
           +A    ++  +     V    +L    K    +  A + Y    ++Q  F  + 
Sbjct: 165 DADYYFKKYQSRVE--VLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSE 216

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 81.5 bits (202), Expect = 1e-17
 Identities = 16/78 (20%), Positives = 26/78 (33%)

Query: 369 PLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKS 428
              ++        Y        A      A+   P    A    A  Y+     + A +S
Sbjct: 5   NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQES 64

Query: 429 YKQALLLRPDFPEATCNL 446
           ++QAL ++PD  E   N 
Sbjct: 65  FRQALSIKPDSAEINNNY 82

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 10/50 (20%), Positives = 13/50 (26%)

Query: 402 RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 451
              ++     LA  Y        A  S + AL   P    A        Q
Sbjct: 4   ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQ 53

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score =  192 bits (491), Expect = 3e-54
 Identities = 76/433 (17%), Positives = 145/433 (33%), Gaps = 98/433 (22%)

Query: 36  LLLLGAIYYQLHDYDMCIARNEEALRLE----PRFAECYGNMANAWKEKGDIDLAIRYYL 91
           L L G    +  D    ++  E A+++        +  Y  + NA+    D   A+ Y+ 
Sbjct: 12  LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHH 71

Query: 92  VAIEL------RPNFADAWSNLASAYMRKGRLNEAAQCCRQALALN------PLLVDAHS 139
             + L      +   A A  NL +     G  +EA  CC++ L ++           A  
Sbjct: 72  HDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALY 131

Query: 140 NLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK 199
           NLGN+  A+G               +                   L  A+ +Y+E + L 
Sbjct: 132 NLGNVYHAKGKSFGCPGPQDVGEFPEEV--------------RDALQAAVDFYEENLSLV 177

Query: 200 PTFPD------AYLNLGNVYKALGMPQEAIMCYQRAVQ-------TRPNAIAFGNLASTY 246
               D      A+ NLGN +  LG  ++A++ +++ +              A+ NL + Y
Sbjct: 178 TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAY 237

Query: 247 YERGQADMAILYYKQA------IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300
              G+ + A  YYK+       +       ++  +LGN    +   ++AI  + + L++ 
Sbjct: 238 IFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297

Query: 301 PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISC 360
               Q L +               +                 +L   Y   GN+  A+  
Sbjct: 298 ----QELNDRIGE---------GRAC---------------WSLGNAYTALGNHDQAMHF 329

Query: 361 YNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 420
             + L I               +E+G       D    +T R  +++    L  +Y  + 
Sbjct: 330 AEKHLEI--------------SREVG-------DKSGELTARLNLSDLQMVLGLSYSTNN 368

Query: 421 HVEAAIKSYKQAL 433
            + +       +L
Sbjct: 369 SIMSENTEIDSSL 381

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score =  189 bits (483), Expect = 4e-53
 Identities = 69/384 (17%), Positives = 114/384 (29%), Gaps = 59/384 (15%)

Query: 97  RPNFADAWSNLASAYMRKGRLNEAAQCCRQALALN----PLLVDAHSNLGNLMKAQGLVQ 152
                   +       + G           A+ +       L   +S LGN         
Sbjct: 5   MEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYA 64

Query: 153 EAYSCYLEALRI------QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD-- 204
           +A   +   L +      Q   A A  NL       G+ + A+   +  + +     D  
Sbjct: 65  KALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV 124

Query: 205 ----AYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYK 260
               A  NLGNVY A G                    A                A+ +Y+
Sbjct: 125 GEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDAL-------------QAAVDFYE 171

Query: 261 QA------IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL------QPSHPQALT 308
           +       +G       A+ NLGN    +G   +A+  + Q L +      + +  +A +
Sbjct: 172 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYS 231

Query: 309 NLGNIYMEWNMLPAAASYYKATLAVT------TGLSAPFNNLAVIYKQQGNYADAISCYN 362
           NLGN Y+       A+ YYK TL +          +    +L   Y    +Y  AI  + 
Sbjct: 232 NLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHL 291

Query: 363 EVLRID------PLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI------RPTMAEAHA 410
           + L I               + GN Y  +G    A+    + + I      +     A  
Sbjct: 292 KHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARL 351

Query: 411 NLASAYKDSGHVEAAIKSYKQALL 434
           NL+      G   +   S      
Sbjct: 352 NLSDLQMVLGLSYSTNNSIMSENT 375

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score =  179 bits (456), Expect = 2e-49
 Identities = 71/352 (20%), Positives = 122/352 (34%), Gaps = 63/352 (17%)

Query: 126 QALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ----PTFAIAWSNLAGLFME 181
             L L           G  +   G  +   S +  A+++      T +  +S L   +  
Sbjct: 8   SCLELA--------LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFY 59

Query: 182 SGDLNRALQYYKEAVKLKPTFPD------AYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
             D  +AL+Y+   + L  T  D      A  NLGN  K LG   EAI+C QR +     
Sbjct: 60  LHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE 119

Query: 236 -------AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDE 288
                  A A  NL + Y+ +G++                            +    +  
Sbjct: 120 LNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVG--------------EFPEEVRDALQA 165

Query: 289 AIQCYNQCLSL------QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT------TG 336
           A+  Y + LSL      + +  +A  NLGN +        A   ++  L +         
Sbjct: 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA 225

Query: 337 LSAPFNNLAVIYKQQGNYADAISCYNEVLRID------PLAADGLVNRGNTYKEIGRVTD 390
               ++NL   Y   G +  A   Y + L +        + A    + GNTY  +     
Sbjct: 226 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEK 285

Query: 391 AIQDYIRAITI------RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLR 436
           AI  +++ + I      R     A  +L +AY   G+ + A+   ++ L + 
Sbjct: 286 AIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 337

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score =  182 bits (464), Expect = 3e-51
 Identities = 68/368 (18%), Positives = 125/368 (33%), Gaps = 77/368 (20%)

Query: 35  NLLLLGAIYYQLHDYDMCIARNEEALRLE----PRFAECYGNMANAWKEKGDIDLAIRYY 90
            L L G    +  D    ++  E A+++        +  Y  + NA+    D   A+ Y+
Sbjct: 7   ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYH 66

Query: 91  LVAIEL------RPNFADAWSNLASAYMRKGRLNEAAQCCRQALALN------PLLVDAH 138
              + L      +   A A  NL +     G  +EA  CC++ L ++           A 
Sbjct: 67  HHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARAL 126

Query: 139 SNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL 198
            NLGN+  A+G               +                   L  A+  Y+E + L
Sbjct: 127 YNLGNVYHAKGKSFGCPGPQDTGEFPED--------------VRNALQAAVDLYEENLSL 172

Query: 199 KPTFPD------AYLNLGNVYKALGMPQEAIMCYQRAVQ-------TRPNAIAFGNLAST 245
                D      A+ NLGN +  LG  ++A++ +++ +              A+ NL + 
Sbjct: 173 VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNA 232

Query: 246 YYERGQADMAILYYKQA------IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 299
           Y   G+ + A  YYK+       +       ++  +LGN    +   ++AI  + + L++
Sbjct: 233 YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292

Query: 300 QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAIS 359
                     L +   E        +                 +L   Y   GN+  A+ 
Sbjct: 293 AQE-------LKDRIGE------GRAC---------------WSLGNAYTALGNHDQAMH 324

Query: 360 CYNEVLRI 367
              + L I
Sbjct: 325 FAEKHLEI 332

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score =  175 bits (445), Expect = 1e-48
 Identities = 64/329 (19%), Positives = 112/329 (34%), Gaps = 61/329 (18%)

Query: 169 AIAWSNLAGLFMESGDLNRALQYYKEAVKL----KPTFPDAYLNLGNVYKALGMPQEAIM 224
            +  +       +SGD    + +++ AV++      T    Y  LGN Y  L    +A+ 
Sbjct: 5   CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALE 64

Query: 225 CYQRAVQTRPN-------AIAFGNLASTYYERGQADMAILYYKQA------IGCDPRFLE 271
            +   +            A A GNL +T    G  D AI+  ++       +        
Sbjct: 65  YHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 124

Query: 272 AYNNLGNALKDVGRV--------------------DEAIQCYNQCLSL------QPSHPQ 305
           A  NLGN     G+                       A+  Y + LSL      + +  +
Sbjct: 125 ALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGR 184

Query: 306 ALTNLGNIYMEWNMLPAAASYYKATLAVT------TGLSAPFNNLAVIYKQQGNYADAIS 359
           A  NLGN +        A   ++  L +             ++NL   Y   G +  A  
Sbjct: 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244

Query: 360 CYNEVLRID------PLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI------RPTMAE 407
            Y + L +        + A    + GNTY  +     AI  +++ + I      R     
Sbjct: 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 304

Query: 408 AHANLASAYKDSGHVEAAIKSYKQALLLR 436
           A  +L +AY   G+ + A+   ++ L + 
Sbjct: 305 ACWSLGNAYTALGNHDQAMHFAEKHLEIS 333

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score =  107 bits (269), Expect = 2e-25
 Identities = 37/234 (15%), Positives = 82/234 (35%), Gaps = 45/234 (19%)

Query: 15  YKQALEHSNSVYERNPLRTDNLLLLGAIYYQL--------------------HDYDMCIA 54
            ++ L+ S  + ++       L  LG +Y+                      +     + 
Sbjct: 106 CQRHLDISRELNDK-VGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164

Query: 55  RNEEALRL------EPRFAECYGNMANAWKEKGDIDLAIRYYLVAIEL------RPNFAD 102
             EE L L             +GN+ N     G+   A+  +   + +      +     
Sbjct: 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERR 224

Query: 103 AWSNLASAYMRKGRLNEAAQCCRQALALN------PLLVDAHSNLGNLMKAQGLVQEAYS 156
           A+SNL +AY+  G    A++  ++ L L        +   +  +LGN        ++A  
Sbjct: 225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 284

Query: 157 CYLEALRI------QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD 204
            +L+ L I      +     A  +L   +   G+ ++A+ + ++ +++     D
Sbjct: 285 YHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGD 338

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score =  164 bits (417), Expect = 2e-47
 Identities = 59/134 (44%), Positives = 83/134 (61%), Gaps = 1/134 (0%)

Query: 169 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQR 228
           A AW NL   + + GD + A++YY++A++L P   +A+ NLGN Y   G   EAI  YQ+
Sbjct: 1   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60

Query: 229 AVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVD 287
           A++  P  A A+ NL + YY++G  D AI YY++A+  DPR  EA+ NLGNA    G  D
Sbjct: 61  ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 120

Query: 288 EAIQCYNQCLSLQP 301
           EAI+ Y + L L P
Sbjct: 121 EAIEYYQKALELDP 134

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score =  154 bits (392), Expect = 6e-44
 Identities = 54/135 (40%), Positives = 80/135 (59%)

Query: 101 ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLE 160
           A+AW NL +AY ++G  +EA +  ++AL L+P   +A  NLGN    QG   EA   Y +
Sbjct: 1   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60

Query: 161 ALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQ 220
           AL + P  A AW NL   + + GD + A++YY++A++L P   +A+ NLGN Y   G   
Sbjct: 61  ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 120

Query: 221 EAIMCYQRAVQTRPN 235
           EAI  YQ+A++  P 
Sbjct: 121 EAIEYYQKALELDPR 135

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score =  147 bits (375), Expect = 1e-41
 Identities = 55/168 (32%), Positives = 78/168 (46%), Gaps = 34/168 (20%)

Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 330
           EA+ NLGNA    G  DEAI+ Y + L L P   +A                        
Sbjct: 2   EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA------------------------ 37

Query: 331 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 390
                     + NL   Y +QG+Y +AI  Y + L +DP +A+   N GN Y + G   +
Sbjct: 38  ----------WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE 87

Query: 391 AIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 438
           AI+ Y +A+ + P  AEA  NL +AY   G  + AI+ Y++AL L P 
Sbjct: 88  AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score =  147 bits (373), Expect = 2e-41
 Identities = 56/134 (41%), Positives = 83/134 (61%)

Query: 67  AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQ 126
           AE + N+ NA+ ++GD D AI YY  A+EL P  A+AW NL +AY ++G  +EA +  ++
Sbjct: 1   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60

Query: 127 ALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLN 186
           AL L+P   +A  NLGN    QG   EA   Y +AL + P  A AW NL   + + GD +
Sbjct: 61  ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 120

Query: 187 RALQYYKEAVKLKP 200
            A++YY++A++L P
Sbjct: 121 EAIEYYQKALELDP 134

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score =  145 bits (370), Expect = 5e-41
 Identities = 61/167 (36%), Positives = 82/167 (49%), Gaps = 35/167 (20%)

Query: 204 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQA 262
           +A+ NLGN Y   G   EAI  YQ+A++  P  A A+ NL + YY++G  D AI YY++A
Sbjct: 2   EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 61

Query: 263 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPA 322
           +  DPR  EA+ NLGNA    G  DEAI+ Y + L L P   +A  NLGN          
Sbjct: 62  LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGN---------- 111

Query: 323 AASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP 369
                                    Y +QG+Y +AI  Y + L +DP
Sbjct: 112 ------------------------AYYKQGDYDEAIEYYQKALELDP 134

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score =  140 bits (356), Expect = 3e-39
 Identities = 56/168 (33%), Positives = 81/168 (48%), Gaps = 34/168 (20%)

Query: 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 295
           A A+ NL + YY++G  D AI YY++A+  DPR  EA+ NLGNA    G  DEAI+ Y +
Sbjct: 1   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60

Query: 296 CLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYA 355
            L L P   +A                                  + NL   Y +QG+Y 
Sbjct: 61  ALELDPRSAEA----------------------------------WYNLGNAYYKQGDYD 86

Query: 356 DAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRP 403
           +AI  Y + L +DP +A+   N GN Y + G   +AI+ Y +A+ + P
Sbjct: 87  EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score =  135 bits (343), Expect = 3e-37
 Identities = 56/128 (43%), Positives = 78/128 (60%)

Query: 39  LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP 98
           LG  YY+  DYD  I   ++AL L+PR AE + N+ NA+ ++GD D AI YY  A+EL P
Sbjct: 7   LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66

Query: 99  NFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCY 158
             A+AW NL +AY ++G  +EA +  ++AL L+P   +A  NLGN    QG   EA   Y
Sbjct: 67  RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 126

Query: 159 LEALRIQP 166
            +AL + P
Sbjct: 127 QKALELDP 134

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score =  118 bits (298), Expect = 3e-31
 Identities = 42/111 (37%), Positives = 62/111 (55%)

Query: 341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAIT 400
           + NL   Y +QG+Y +AI  Y + L +DP +A+   N GN Y + G   +AI+ Y +A+ 
Sbjct: 4   WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 63

Query: 401 IRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 451
           + P  AEA  NL +AY   G  + AI+ Y++AL L P   EA  NL +   
Sbjct: 64  LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 114

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 87.1 bits (217), Expect = 2e-20
 Identities = 30/75 (40%), Positives = 42/75 (56%)

Query: 372 ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 431
           A+   N GN Y + G   +AI+ Y +A+ + P  AEA  NL +AY   G  + AI+ Y++
Sbjct: 1   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60

Query: 432 ALLLRPDFPEATCNL 446
           AL L P   EA  NL
Sbjct: 61  ALELDPRSAEAWYNL 75

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 60.9 bits (149), Expect = 3e-11
 Identities = 34/94 (36%), Positives = 46/94 (48%), Gaps = 23/94 (24%)

Query: 14  SYKQALE--------HSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR 65
            Y++ALE          N               LG  YY+  DYD  I   ++AL L+PR
Sbjct: 57  YYQKALELDPRSAEAWYN---------------LGNAYYKQGDYDEAIEYYQKALELDPR 101

Query: 66  FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPN 99
            AE + N+ NA+ ++GD D AI YY  A+EL P 
Sbjct: 102 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score =  163 bits (416), Expect = 4e-45
 Identities = 55/308 (17%), Positives = 99/308 (32%), Gaps = 49/308 (15%)

Query: 42  IYYQLHDYDMCIARNEEALRLE-PRFAECYGNMANAWKEKGDIDLAIRYYLVAIELR--- 97
           +++  H          +    E P       N+   +  +G  ++A+     A+E     
Sbjct: 1   MHHHHHHSSGRENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKT 60

Query: 98  -----PNFADAWSNLASAYMRKGRLNEAAQCCRQALAL--------NPLLVDAHSNLGNL 144
                P+ A   + LA  Y  + +  +AA     ALA+        +P +    +NL  L
Sbjct: 61  SGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVL 120

Query: 145 MKAQGLVQEAYSCYLEALRIQ--------PTFAIAWSNLAGLFMESGDLNRALQYYKEAV 196
              +G  +EA      AL I+        P  A   +NLA L    G       YY+ A+
Sbjct: 121 YGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180

Query: 197 K-----LKPTFPD---AYLNLGNVYKALGMPQEAIMCYQRAVQTR---------PN-AIA 238
           +     L P  P+      NL + Y   G  ++A   Y+  +                  
Sbjct: 181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPI 240

Query: 239 FGNLASTYYERGQADMAILYYKQAI-----GCD-PRFLEAYNNLGNALKDVGRVDEAIQC 292
           + +       +G+      + +          D P       NLG   +  G+ + A   
Sbjct: 241 WMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETL 300

Query: 293 YNQCLSLQ 300
               +  +
Sbjct: 301 EEAAMRSR 308

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score =  160 bits (406), Expect = 9e-44
 Identities = 64/338 (18%), Positives = 107/338 (31%), Gaps = 88/338 (26%)

Query: 87  IRYYLVAIELR------------PNFADAWSNLASAYMRKGRLNEAAQCCRQALAL---- 130
           + ++      R            P       NL   Y  +GR   A   C+QAL      
Sbjct: 1   MHHHHHHSSGRENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKT 60

Query: 131 ----NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ--------PTFAIAWSNLAGL 178
               +P +    + L  + + Q   ++A +   +AL I+        P  A   +NLA L
Sbjct: 61  SGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVL 120

Query: 179 FMESGDLNRALQYYKEAVK-----LKPTFPD---AYLNLGNVYKALGMPQEAIMCYQRAV 230
           + + G    A    K A++     L    PD      NL  + +  G  +E    YQRA+
Sbjct: 121 YGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180

Query: 231 QTR--------PN-AIAFGNLASTYYERGQADMAILYYKQAI--------GCD-PRFLEA 272
           +          PN A    NLAS Y ++G+   A   YK+ +        G         
Sbjct: 181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPI 240

Query: 273 YNNLGNALKDVGRVDEAIQCYNQCL---SLQPSHPQALTNLGNIYMEWNMLPAAASYYKA 329
           + +     +  G+  +            + +   P   T L                   
Sbjct: 241 WMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTL------------------- 281

Query: 330 TLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI 367
                        NL  +Y++QG +  A +     +R 
Sbjct: 282 ------------KNLGALYRRQGKFEAAETLEEAAMRS 307

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score =  157 bits (400), Expect = 7e-43
 Identities = 67/336 (19%), Positives = 101/336 (30%), Gaps = 83/336 (24%)

Query: 152 QEAYSCYLEALRIQ------PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK-----P 200
               S   E L  Q      P       NL   +   G    A+   K+A++        
Sbjct: 5   HHHSSGR-ENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGH 63

Query: 201 TFPD---AYLNLGNVYKALGMPQEAIMCYQRAVQTR--------PN-AIAFGNLASTYYE 248
             PD       L  VY+     ++A      A+  R        P  A    NLA  Y +
Sbjct: 64  DHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK 123

Query: 249 RGQADMAILYYKQAI-------GCD-PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300
           RG+   A    K+A+       G D P   +  NNL    ++ G+ +E    Y + L + 
Sbjct: 124 RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183

Query: 301 -----PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYA 355
                P  P                                     NNLA  Y +QG + 
Sbjct: 184 QTKLGPDDPNVAKTK-------------------------------NNLASCYLKQGKFK 212

Query: 356 DAISCYNEVLRI---------DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR---- 402
            A + Y E+L           D       ++     +  G+  D           +    
Sbjct: 213 QAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKV 272

Query: 403 --PTMAEAHANLASAYKDSGHVEAAIKSYKQALLLR 436
             PT+     NL + Y+  G  EAA    + A+  R
Sbjct: 273 DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score =  143 bits (363), Expect = 6e-38
 Identities = 56/302 (18%), Positives = 105/302 (34%), Gaps = 53/302 (17%)

Query: 15  YKQALEHSNSVYERN-----PLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLE------ 63
           +        ++Y +      P R   L  L   Y     Y++ +   ++AL         
Sbjct: 4   HHHHSSGRENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGH 63

Query: 64  --PRFAECYGNMANAWKEKGDIDLAIRYYLVAIELR--------PNFADAWSNLASAYMR 113
             P  A     +A  ++++     A      A+ +R        P  A   +NLA  Y +
Sbjct: 64  DHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK 123

Query: 114 KGRLNEAAQCCRQALAL--------NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ 165
           +G+  EA   C++AL +        +P +    +NL  L + QG  +E    Y  AL I 
Sbjct: 124 RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183

Query: 166 --------PTFAIAWSNLAGLFMESGDLNRALQYYKEAVK------LKPTFPD---AYLN 208
                   P  A   +NLA  +++ G   +A   YKE +             +    +++
Sbjct: 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMH 243

Query: 209 LGNVYKALGMPQEAIMCYQRAVQTR------PN-AIAFGNLASTYYERGQADMAILYYKQ 261
                +  G  ++     +     +      P       NL + Y  +G+ + A    + 
Sbjct: 244 AEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEA 303

Query: 262 AI 263
           A+
Sbjct: 304 AM 305

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score =  104 bits (263), Expect = 8e-25
 Identities = 48/213 (22%), Positives = 71/213 (33%), Gaps = 53/213 (24%)

Query: 246 YYERGQADMAILYYKQAIGCD-PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ---- 300
           ++    +      Y Q  G + P  L   +NL       GR + A+    Q L       
Sbjct: 2   HHHHHHSSGRENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTS 61

Query: 301 -PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAIS 359
              HP   T L                               N LA++Y+ Q  Y DA +
Sbjct: 62  GHDHPDVATML-------------------------------NILALVYRDQNKYKDAAN 90

Query: 360 CYNEVLRI--------DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR--------P 403
             N+ L I         P  A  L N    Y + G+  +A     RA+ IR        P
Sbjct: 91  LLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP 150

Query: 404 TMAEAHANLASAYKDSGHVEAAIKSYKQALLLR 436
            +A+   NLA   ++ G  E     Y++AL + 
Sbjct: 151 DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 77.6 bits (192), Expect = 2e-15
 Identities = 31/175 (17%), Positives = 54/175 (30%), Gaps = 24/175 (13%)

Query: 15  YKQALEHSNSVY-ERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLE--------PR 65
            K+ALE    V  + +P     L  L  +      Y+      + AL +         P 
Sbjct: 134 CKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPN 193

Query: 66  FAECYGNMANAWKEKGDIDLAIRYYLVAIELR---------PNFADAWSNLASAYMRKGR 116
            A+   N+A+ + ++G    A   Y   +                  W +       KG+
Sbjct: 194 VAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGK 253

Query: 117 LNEAAQCCRQALALN------PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ 165
             +                  P +     NLG L + QG  + A +    A+R +
Sbjct: 254 QKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score =  154 bits (391), Expect = 5e-43
 Identities = 30/205 (14%), Positives = 65/205 (31%), Gaps = 17/205 (8%)

Query: 66  FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAW----------------SNLAS 109
             +      +A  E G    A+ Y+   I L  +  + +                + LA 
Sbjct: 3   SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELAL 62

Query: 110 AYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFA 169
           AY +    ++A    ++ L   P  VD       +   +G  ++A   Y + L+++    
Sbjct: 63  AYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNL 122

Query: 170 IAWSNLAGLFMESGDLNR-ALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQR 228
            A   L   +  + +  +  L+   + +        A    G         ++A    Q+
Sbjct: 123 AANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQK 182

Query: 229 AVQTRPNAIAFGNLASTYYERGQAD 253
            +   P+  A   L        + +
Sbjct: 183 VILRFPSTEAQKTLDKILRIEKEVN 207

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score =  152 bits (385), Expect = 3e-42
 Identities = 29/201 (14%), Positives = 64/201 (31%), Gaps = 18/201 (8%)

Query: 34  DNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECY----------------GNMANAW 77
           D +L   +   +       ++   + + L     E Y                  +A A+
Sbjct: 5   DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAY 64

Query: 78  KEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDA 137
           K+  + D A  +Y   ++  PN  D     A   + +G+  +A +   + L L    + A
Sbjct: 65  KKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAA 124

Query: 138 HSNLGNLMKAQG-LVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAV 196
           +  LGN         ++      + L        A        + +    +A    ++ +
Sbjct: 125 NIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVI 184

Query: 197 KLKPTFPDAYLNLGNVYKALG 217
              P+  +A   L  + +   
Sbjct: 185 LRFPS-TEAQKTLDKILRIEK 204

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score =  152 bits (385), Expect = 3e-42
 Identities = 36/224 (16%), Positives = 67/224 (29%), Gaps = 20/224 (8%)

Query: 167 TFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCY 226
                        +E+G   +A+ Y+++ + L     + Y        +    +      
Sbjct: 2   QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSK------ 55

Query: 227 QRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRV 286
                          LA  Y +    D A L+YK+ +   P  ++            G+ 
Sbjct: 56  -----------LATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQE 104

Query: 287 DEAIQCYNQCLSLQPSHPQALTNLGNIYMEW-NMLPAAASYYKATLAVTTGLSAPFNNLA 345
            +A++ Y + L L+  +  A   LGN Y                 L+  T +        
Sbjct: 105 KDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDG 164

Query: 346 VIYKQQGNYADAISCYNEVLRIDP--LAADGLVNRGNTYKEIGR 387
           +       Y  A +   +V+   P   A   L       KE+ R
Sbjct: 165 LSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDKILRIEKEVNR 208

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score =  149 bits (377), Expect = 3e-41
 Identities = 38/232 (16%), Positives = 67/232 (28%), Gaps = 49/232 (21%)

Query: 100 FADAWSNLASAYMRKGRLNEAAQCCRQALALNP----------------LLVDAHSNLGN 143
             D      SA +  G+  +A    RQ +ALN                 +     + L  
Sbjct: 3   SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELAL 62

Query: 144 LMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFP 203
             K      +AY  Y E L+  P         A + +  G    AL+ Y++ ++L+    
Sbjct: 63  AYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNL 122

Query: 204 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAI 263
            A + LGN Y      ++                                  +    + +
Sbjct: 123 AANIFLGNYYYLTAEQEKK--------------------------------KLETDYKKL 150

Query: 264 GCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM 315
               +   A    G +     R ++A     + +   PS  +A   L  I  
Sbjct: 151 SSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS-TEAQKTLDKILR 201

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score =  145 bits (368), Expect = 7e-40
 Identities = 32/247 (12%), Positives = 67/247 (27%), Gaps = 53/247 (21%)

Query: 201 TFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYK 260
              D  L   +     G   +A+  +++ +    +                    + Y+ 
Sbjct: 2   QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID-----------------RTEMYYWT 44

Query: 261 QAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNML 320
                     +    L  A K     D+A   Y + L   P++   L     + +     
Sbjct: 45  NVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVC---- 100

Query: 321 PAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGN 380
                                         +G   DA+  Y ++L+++       +  GN
Sbjct: 101 ------------------------------RGQEKDALRMYEKILQLEADNLAANIFLGN 130

Query: 381 TYKEIGRVTD-AIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 439
            Y          ++   + ++    M  A      +   +   E A  S ++ +L  P  
Sbjct: 131 YYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS- 189

Query: 440 PEATCNL 446
            EA   L
Sbjct: 190 TEAQKTL 196

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score =  122 bits (307), Expect = 1e-31
 Identities = 30/203 (14%), Positives = 63/203 (31%), Gaps = 18/203 (8%)

Query: 2   HMALAHQMYKSGSYKQALEHSNSVYERNP----------------LRTDNLLLLGAIYYQ 45
            +       ++G   QA+ +       N                 + +     L   Y +
Sbjct: 7   MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKK 66

Query: 46  LHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWS 105
             +YD      +E L+  P   +C    A     +G    A+R Y   ++L  +   A  
Sbjct: 67  NRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANI 126

Query: 106 NLASAYMRKG-RLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI 164
            L + Y     +  +  +   + L+    +  A    G         ++A +   + +  
Sbjct: 127 FLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186

Query: 165 QPTFAIAWSNLAGLFMESGDLNR 187
            P+   A   L  +     ++NR
Sbjct: 187 FPSTE-AQKTLDKILRIEKEVNR 208

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score =  100 bits (252), Expect = 2e-24
 Identities = 19/150 (12%), Positives = 46/150 (30%), Gaps = 2/150 (1%)

Query: 1   MHMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEAL 60
           +   LA    K+ +Y +A      + ++ P   D L     +          +   E+ L
Sbjct: 56  LATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKIL 115

Query: 61  RLEPRFAECYGNMANAWKEKGD-IDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNE 119
           +LE         + N +    +     +      +        A      + +   R  +
Sbjct: 116 QLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEK 175

Query: 120 AAQCCRQALALNPLLVDAHSNLGNLMKAQG 149
           A    ++ +   P   +A   L  +++ + 
Sbjct: 176 ARNSLQKVILRFP-STEAQKTLDKILRIEK 204

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score =  151 bits (384), Expect = 5e-41
 Identities = 51/277 (18%), Positives = 89/277 (32%), Gaps = 48/277 (17%)

Query: 72  NMANAWKEKGDIDLAIRYYLVAIELR--------PNFADAWSNLASAYMRKGRLNEAAQC 123
           +  +          A+     A+E          P+ A   + LA  Y  + +  EAA  
Sbjct: 6   HHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHL 65

Query: 124 CRQALAL--------NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ--------PT 167
              ALA+        +P +    +NL  L   +G  +EA      AL I+        P 
Sbjct: 66  LNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPD 125

Query: 168 FAIAWSNLAGLFMESGDLNRALQYYKEAVK-----LKPTFPD---AYLNLGNVYKALGMP 219
            A   +NLA L    G       YY+ A++     L P  P+      NL + Y   G  
Sbjct: 126 VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKY 185

Query: 220 QEAIMCYQRAVQTR---------PN-AIAFGNLASTYYERGQADMAILYYKQAI-----G 264
           Q+A   Y+  +             +    + +       + +   +  Y +         
Sbjct: 186 QDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK 245

Query: 265 CD-PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300
            D P       +LG   +  G+++ A    +     +
Sbjct: 246 VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score =  149 bits (379), Expect = 2e-40
 Identities = 48/276 (17%), Positives = 90/276 (32%), Gaps = 48/276 (17%)

Query: 140 NLGNLMKAQGLVQEAYSCYLEALRIQ--------PTFAIAWSNLAGLFMESGDLNRALQY 191
           +  +          A     +AL           P  A   + LA ++ +      A   
Sbjct: 6   HHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHL 65

Query: 192 YKEAVKLK-----PTFPD---AYLNLGNVYKALGMPQEAIMCYQRAVQTR--------PN 235
             +A+ ++        P       NL  +Y   G  +EA    +RA++ R        P+
Sbjct: 66  LNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPD 125

Query: 236 -AIAFGNLASTYYERGQADMAILYYKQAI-------GCD-PRFLEAYNNLGNALKDVGRV 286
            A    NLA     +G+A+    YY++A+       G D P   +  NNL +     G+ 
Sbjct: 126 VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKY 185

Query: 287 DEAIQCYNQCLS------LQPSHP---QALTNLGNIYMEWNMLPAAASYYKATLAVTT-G 336
            +A   Y + L+          +        +        +    +A Y +         
Sbjct: 186 QDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK 245

Query: 337 LSAP-----FNNLAVIYKQQGNYADAISCYNEVLRI 367
           + +P       +L  +Y++QG    A +  +   R 
Sbjct: 246 VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score =  148 bits (376), Expect = 4e-40
 Identities = 58/308 (18%), Positives = 92/308 (29%), Gaps = 76/308 (24%)

Query: 174 NLAGLFMESGDLNRALQYYKEAVKLK-----PTFPD---AYLNLGNVYKALGMPQEAIMC 225
           +             A+   K+A++          PD       L  VY+     +EA   
Sbjct: 6   HHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHL 65

Query: 226 YQRAVQTR--------PN-AIAFGNLASTYYERGQADMAILYYKQAI-------GCD-PR 268
              A+  R        P  A    NLA  Y +RG+   A    K+A+       G   P 
Sbjct: 66  LNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPD 125

Query: 269 FLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ-----PSHPQALTNLGNIYMEWNMLPAA 323
             +  NNL    ++ G+ +E    Y + L +      P  P                   
Sbjct: 126 VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK------------- 172

Query: 324 ASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI---------DPLAADG 374
                             NNLA  Y +QG Y DA + Y E+L           +      
Sbjct: 173 ------------------NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPI 214

Query: 375 LVNRGNTYKEIGRVTDAIQDYIRAITIR------PTMAEAHANLASAYKDSGHVEAAIKS 428
            ++     +   +  D+          +      PT+     +L + Y+  G +EAA   
Sbjct: 215 WMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTL 274

Query: 429 YKQALLLR 436
              A   R
Sbjct: 275 EDCASRNR 282

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score =  133 bits (336), Expect = 1e-34
 Identities = 46/240 (19%), Positives = 85/240 (35%), Gaps = 40/240 (16%)

Query: 64  PRFAECYGNMANAWKEKGDIDLAIRYYLVAIELR--------PNFADAWSNLASAYMRKG 115
           P  A     +A  ++++     A      A+ +R        P  A   +NLA  Y ++G
Sbjct: 40  PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG 99

Query: 116 RLNEAAQCCRQALAL--------NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ-- 165
           +  EA   C++AL +        +P +    +NL  L + QG  +E    Y  AL I   
Sbjct: 100 KYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYAT 159

Query: 166 ------PTFAIAWSNLAGLFMESGDLNRALQYYKEAVK------LKPTFPD---AYLNLG 210
                 P  A   +NLA  +++ G    A   YKE +             D    +++  
Sbjct: 160 RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAE 219

Query: 211 NVYKALGMPQEAIMCYQRAVQTR------PN-AIAFGNLASTYYERGQADMAILYYKQAI 263
              ++    +++    +     +      P       +L + Y  +G+ + A      A 
Sbjct: 220 EREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCAS 279

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score =  121 bits (306), Expect = 1e-30
 Identities = 52/259 (20%), Positives = 85/259 (32%), Gaps = 40/259 (15%)

Query: 15  YKQALEHSNSVYERNPLRTDNLL-LLGAIYYQLHDYDMCIARNEEALRLE--------PR 65
            KQALE        +      +L +L  +Y   + Y        +AL +         P 
Sbjct: 24  CKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPA 83

Query: 66  FAECYGNMANAWKEKGDIDLAIRYYLVAIELR--------PNFADAWSNLASAYMRKGRL 117
            A    N+A  + ++G    A      A+E+R        P+ A   +NLA     +G+ 
Sbjct: 84  VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKA 143

Query: 118 NEAAQCCRQALAL--------NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ---- 165
            E     R+AL +        +P +    +NL +    QG  Q+A + Y E L       
Sbjct: 144 EEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203

Query: 166 -----PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK------PTFPDAYLNLGNVYK 214
                      W +             +  Y +     K      PT      +LG +Y+
Sbjct: 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYR 263

Query: 215 ALGMPQEAIMCYQRAVQTR 233
             G  + A      A + R
Sbjct: 264 RQGKLEAAHTLEDCASRNR 282

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score =  108 bits (271), Expect = 4e-26
 Identities = 45/198 (22%), Positives = 68/198 (34%), Gaps = 36/198 (18%)

Query: 270 LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ-----PSHP---QALTNLGNIYMEWNMLP 321
           + + ++  +    +     A+    Q L          HP     L  L  +Y + N   
Sbjct: 1   MGSSHHHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYK 60

Query: 322 AAASYYKATLAVT----------TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRID--- 368
            AA      LA+              +   NNLAV+Y ++G Y +A       L I    
Sbjct: 61  EAAHLLNDALAIREKTLGKDHPAVAAT--LNNLAVLYGKRGKYKEAEPLCKRALEIREKV 118

Query: 369 -----PLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR--------PTMAEAHANLASA 415
                P  A  L N     +  G+  +    Y RA+ I         P +A+   NLAS 
Sbjct: 119 LGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASC 178

Query: 416 YKDSGHVEAAIKSYKQAL 433
           Y   G  + A   YK+ L
Sbjct: 179 YLKQGKYQDAETLYKEIL 196

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score =  139 bits (353), Expect = 6e-39
 Identities = 47/120 (39%), Positives = 70/120 (58%)

Query: 98  PNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSC 157
            N A+AW NL +AY ++G  +EA +  ++AL L+P   +A  NLGN    QG   EA   
Sbjct: 6   GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65

Query: 158 YLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG 217
           Y +AL + P  A AW NL   + + GD + A++YY++A++L P   +A  NLGN  +  G
Sbjct: 66  YQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score =  129 bits (326), Expect = 3e-35
 Identities = 49/120 (40%), Positives = 68/120 (56%)

Query: 64  PRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQC 123
              AE + N+ NA+ ++GD D AI YY  A+EL PN A+AW NL +AY ++G  +EA + 
Sbjct: 6   GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65

Query: 124 CRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESG 183
            ++AL L+P   +A  NLGN    QG   EA   Y +AL + P  A A  NL     + G
Sbjct: 66  YQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score =  129 bits (326), Expect = 3e-35
 Identities = 50/157 (31%), Positives = 70/157 (44%), Gaps = 34/157 (21%)

Query: 129 ALNPL-LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNR 187
           A++P    +A  NLGN    QG   EA   Y +AL + P  A AW NL   + + GD + 
Sbjct: 2   AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61

Query: 188 ALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYY 247
           A++YY++A++L P   +A+ NLGN Y   G   EAI                        
Sbjct: 62  AIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY---------------------- 99

Query: 248 ERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVG 284
                      Y++A+  DP   EA  NLGNA +  G
Sbjct: 100 -----------YQKALELDPNNAEAKQNLGNAKQKQG 125

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score =  125 bits (318), Expect = 4e-34
 Identities = 47/154 (30%), Positives = 68/154 (44%), Gaps = 34/154 (22%)

Query: 267 PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASY 326
               EA+ NLGNA    G  DEAI+ Y + L L P++ +A                    
Sbjct: 6   GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA-------------------- 45

Query: 327 YKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIG 386
                         + NL   Y +QG+Y +AI  Y + L +DP  A+   N GN Y + G
Sbjct: 46  --------------WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG 91

Query: 387 RVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 420
              +AI+ Y +A+ + P  AEA  NL +A +  G
Sbjct: 92  DYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score =  121 bits (306), Expect = 2e-32
 Identities = 49/152 (32%), Positives = 72/152 (47%), Gaps = 34/152 (22%)

Query: 235 NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 294
           +A A+ NL + YY++G  D AI YY++A+  DP   EA+ NLGNA    G  DEAI+ Y 
Sbjct: 8   SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67

Query: 295 QCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNY 354
           + L L P++ +A                                  + NL   Y +QG+Y
Sbjct: 68  KALELDPNNAEA----------------------------------WYNLGNAYYKQGDY 93

Query: 355 ADAISCYNEVLRIDPLAADGLVNRGNTYKEIG 386
            +AI  Y + L +DP  A+   N GN  ++ G
Sbjct: 94  DEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score =  120 bits (304), Expect = 3e-32
 Identities = 50/111 (45%), Positives = 71/111 (63%)

Query: 39  LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP 98
           LG  YY+  DYD  I   ++AL L+P  AE + N+ NA+ ++GD D AI YY  A+EL P
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74

Query: 99  NFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQG 149
           N A+AW NL +AY ++G  +EA +  ++AL L+P   +A  NLGN  + QG
Sbjct: 75  NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score =  119 bits (302), Expect = 6e-32
 Identities = 43/111 (38%), Positives = 63/111 (56%)

Query: 341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAIT 400
           + NL   Y +QG+Y +AI  Y + L +DP  A+   N GN Y + G   +AI+ Y +A+ 
Sbjct: 12  WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71

Query: 401 IRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 451
           + P  AEA  NL +AY   G  + AI+ Y++AL L P+  EA  NL +  Q
Sbjct: 72  LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 87.8 bits (219), Expect = 8e-21
 Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 17/99 (17%)

Query: 353 NYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANL 412
           N A+A   +               N GN Y + G   +AI+ Y +A+ + P  AEA  NL
Sbjct: 7   NSAEA---WY--------------NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL 49

Query: 413 ASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 451
            +AY   G  + AI+ Y++AL L P+  EA  NL +   
Sbjct: 50  GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score =  146 bits (370), Expect = 2e-38
 Identities = 50/358 (13%), Positives = 100/358 (27%), Gaps = 45/358 (12%)

Query: 111 YMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAI 170
            +R+  + +A     +       + +   +L           +    YLE  +       
Sbjct: 22  MIRQFSVPDAEILKAEVEQDIQQMEE-DQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPT 80

Query: 171 AWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAV 230
               L  +      L   L+YY            +    G          EAI  Y+ A 
Sbjct: 81  VTELLETIETPQKKLTGLLKYY------------SLFFRGMYEFDQKEYVEAIGYYREAE 128

Query: 231 QTRPN-------AIAFGNLASTYYERGQADMAILYYKQAI-------GCDPRFLEAYNNL 276
           +  P        A     +A  YY   Q  +++ +  QA+           R +++   +
Sbjct: 129 KELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188

Query: 277 GNALKDVGRVDEAIQCYNQCLSLQPSHP------QALTNLGNIYMEWNMLPAAASYYKAT 330
                D    D+A+      L L            +L N+ N Y        A  +++  
Sbjct: 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA 248

Query: 331 LAVTTGLSAPF-----NNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLV-NRGNTYKE 384
             V+              L+    + G    A     E L      +           + 
Sbjct: 249 AKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQA 308

Query: 385 IGRVTDAIQDYIRAITI------RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLR 436
           + + T   +     ++          +     + A+ ++ S H E A   Y++ L  +
Sbjct: 309 VYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score =  131 bits (332), Expect = 2e-33
 Identities = 44/348 (12%), Positives = 95/348 (27%), Gaps = 55/348 (15%)

Query: 7   HQMYKSGSYKQALEHSNSV------YERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEAL 60
           ++M +  S   A      V       E +        L+   +  + DY           
Sbjct: 20  YKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRP 79

Query: 61  RLE-------------PRFAECYG--NMANAWKEKGDIDLAIRYYLVAIEL------RPN 99
            +                  + Y          ++ +   AI YY  A +          
Sbjct: 80  TVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIE 139

Query: 100 FADAWSNLASAYMRKGRLNEAAQCCRQALAL-------NPLLVDAHSNLGNLMKAQGLVQ 152
            A+    +A AY    + + +     QAL +       +   + +   +           
Sbjct: 140 KAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYD 199

Query: 153 EAYSCYLEALRI------QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK-----PT 201
           +A      AL +          AI+  N+A  +  SGD   A++++++A K+        
Sbjct: 200 KALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL 259

Query: 202 FPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN---------AIAFGNLASTYYERGQA 252
            P     L       G  Q+A    +  +               +    +     +  + 
Sbjct: 260 LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKI 319

Query: 253 DMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300
              + Y+++             +     +     ++A   Y + L  Q
Sbjct: 320 HDLLSYFEK-KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 15/100 (15%), Positives = 33/100 (33%), Gaps = 7/100 (7%)

Query: 5   LAHQMYKSGSYKQALEHSN-----SVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNE-- 57
           L+  + K+G  ++A +             +    +  L L A+Y +  D           
Sbjct: 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF 326

Query: 58  EALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELR 97
           E   L      C  + A  ++     + A  +Y   ++ +
Sbjct: 327 EKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score =  138 bits (349), Expect = 2e-35
 Identities = 53/361 (14%), Positives = 120/361 (33%), Gaps = 48/361 (13%)

Query: 111 YMRKGRLNEAAQCCRQALALNPLLVDAHSNLG--NLMKAQGLVQEAYSCYLEALRIQPTF 168
           Y+R+  + +A    R+       + +        +LM+ +  +   Y   LE +RI+   
Sbjct: 22  YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQP 81

Query: 169 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQR 228
            ++   L  +  +   L   L+YY                 G           AI  +++
Sbjct: 82  RLS-DLLLEIDKKQARLTGLLEYY------------FNFFRGMYELDQREYLSAIKFFKK 128

Query: 229 AVQTRPN-------AIAFGNLASTYYERGQADMAILYYKQAI-------GCDPRFLEAYN 274
           A             A  F  ++ +YY   Q   ++ Y +QA          + R L+ ++
Sbjct: 129 AESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188

Query: 275 NLGNALKDVGRVDEAIQCYNQCLSL------QPSHPQALTNLGNIYMEWNMLPAAASYYK 328
                  D+ + ++AI  + +  S+           + L N+G      +    A  Y+K
Sbjct: 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFK 248

Query: 329 ATLAVT------TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI-----DPLAADGLVN 377
             +AV         L   +  +  I+ + G    A   +++ +       D +       
Sbjct: 249 RAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEF 308

Query: 378 RGNTYKEIG--RVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLL 435
             + Y             D++ +  +   + +   ++A  Y +  + + A   + +   +
Sbjct: 309 LKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368

Query: 436 R 436
           R
Sbjct: 369 R 369

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score =  131 bits (330), Expect = 5e-33
 Identities = 45/395 (11%), Positives = 116/395 (29%), Gaps = 80/395 (20%)

Query: 7   HQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF 66
           +   +  S   A      + +      ++  L   +YY L ++               R 
Sbjct: 20  YMYIRRFSIPDAEYLRREIKQELDQMEEDQDLH--LYYSLMEF---------------RH 62

Query: 67  AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQ 126
                 +    K + +    +   L+ I+         + L   Y               
Sbjct: 63  NLMLEYLEPLEKMRIEEQPRLSDLLLEID---KKQARLTGLLEYY--------------- 104

Query: 127 ALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF------AIAWSNLAGLFM 180
                      +   G     Q     A   + +A             A  +  ++  + 
Sbjct: 105 ----------FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYY 154

Query: 181 ESGDLNRALQYYKEAVKLKPTFPD-------AYLNLGNVYKALGMPQEAIMCYQRAVQTR 233
                  ++ Y ++A ++              +      +  L   ++AI  +Q+A    
Sbjct: 155 YMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMA 214

Query: 234 PN-------AIAFGNLASTYYERGQADMAILYYKQA------IGCDPRFLEAYNNLGNAL 280
                         N+      + Q + AI Y+K+A          P   +AY  +    
Sbjct: 215 EAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIH 274

Query: 281 KDVGRVDEAIQCYNQCLSL-----QPSHPQALTNLGNIYMEWN---MLPAAASYYKATLA 332
             +G++D+A + +++ ++         +      L ++Y+       +     + ++ + 
Sbjct: 275 YKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML 334

Query: 333 VTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI 367
               L     ++A  Y ++ N+  A + + +V ++
Sbjct: 335 -YADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score =  119 bits (301), Expect = 3e-29
 Identities = 32/246 (13%), Positives = 80/246 (32%), Gaps = 29/246 (11%)

Query: 15  YKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRL-------EPRFA 67
           +K+A      V +R   + +    +   YY +      +    +A  +         R  
Sbjct: 126 FKKAESKLIFVKDR-IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184

Query: 68  ECYGNMANAWKEKGDIDLAIRYYLVAIEL------RPNFADAWSNLASAYMRKGRLNEAA 121
           +C+   A  + +    + AI ++  A  +               N+      + +  +A 
Sbjct: 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAI 244

Query: 122 QCCRQALALN------PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI-----QPTFAI 170
              ++A+A+       P L  A+  +  +    G + +A+  + + +          +  
Sbjct: 245 PYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLS 304

Query: 171 AWSNLAGLFMESGD---LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQ 227
            +  L  L++   D   +     + +    L     D  +++   Y      Q+A   + 
Sbjct: 305 EFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFL 363

Query: 228 RAVQTR 233
           +  Q R
Sbjct: 364 KVEQVR 369

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 46.0 bits (109), Expect = 4e-05
 Identities = 17/100 (17%), Positives = 37/100 (37%), Gaps = 7/100 (7%)

Query: 5   LAHQMYKSGSYKQALEHSN-----SVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNE-- 57
           +    YK G   +A E+ +     S    + +       L ++Y    D +      +  
Sbjct: 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFL 329

Query: 58  EALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELR 97
           E+  L     +   ++A  + E+ +   A  Y+L   ++R
Sbjct: 330 ESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score =  123 bits (309), Expect = 2e-30
 Identities = 48/252 (19%), Positives = 83/252 (32%), Gaps = 14/252 (5%)

Query: 91  LVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGN-LMKAQG 149
           +V I     F D +    +   R  R   A +  R A+ LN             L   Q 
Sbjct: 87  VVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQK 146

Query: 150 LVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNL 209
            + E  +     +  QP     W +   L     D ++ L++  + +        A+ + 
Sbjct: 147 DLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHR 206

Query: 210 GNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLAST------YYERGQADMAILYYKQA 262
             V +   +    +    + ++    N   +            Y +R   +  + Y  + 
Sbjct: 207 QWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEM 266

Query: 263 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQ--ALTNLGNIY---MEW 317
           I   P    A+N L   L+D G + +     NQ L LQPSH     +  L +IY   +E 
Sbjct: 267 IKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLEN 325

Query: 318 NMLPAAASYYKA 329
                     KA
Sbjct: 326 QCDNKEDILNKA 337

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score =  108 bits (271), Expect = 2e-25
 Identities = 32/247 (12%), Positives = 71/247 (28%), Gaps = 13/247 (5%)

Query: 39  LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKE-KGDIDLAIRYYLVAIELR 97
             A+  +    +       +A+ L       +       K  + D+   + Y    IE +
Sbjct: 103 FRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ 162

Query: 98  PNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSC 157
           P     W +           ++  +     L  +     A  +   +++   L       
Sbjct: 163 PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQY 222

Query: 158 YLEALRIQPTFAIAWSNLAGLFMESGD------LNRALQYYKEAVKLKPTFPDAYLNLGN 211
             + L+        W+    +   +        L R +QY  E +KL P    A+  L  
Sbjct: 223 VDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKG 282

Query: 212 VYKALGMPQEAIMCYQRAVQTRPN---AIAFGNLASTYYE--RGQADMAILYYKQAIGCD 266
           + +  G+  +      + +  +P+         L   Y +    Q D       +A+   
Sbjct: 283 ILQDRGL-SKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELC 341

Query: 267 PRFLEAY 273
               +  
Sbjct: 342 EILAKEK 348

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 97.5 bits (242), Expect = 9e-22
 Identities = 28/314 (8%), Positives = 81/314 (25%), Gaps = 67/314 (21%)

Query: 127 ALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESG-DL 185
            +  +    D +     +++     + A+    +A+ +       W     L      DL
Sbjct: 89  QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 148

Query: 186 NRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLAST 245
           +  + Y    ++ +P     + +   + + L  P + +                      
Sbjct: 149 HEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADI---------------- 192

Query: 246 YYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQ 305
                            +  D +   A+ +    +++    D  +Q  +Q L     +  
Sbjct: 193 -----------------LNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNS 235

Query: 306 ALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVL 365
                  +                                  Y  +      +    E++
Sbjct: 236 VWNQRYFVISNTT----------------------------GYNDRAVLEREVQYTLEMI 267

Query: 366 RIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHAN--LASAYKDSGH-- 421
           ++ P             ++ G ++       + + ++P+ +  +    L   Y+D     
Sbjct: 268 KLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQ 326

Query: 422 VEAAIKSYKQALLL 435
            +       +AL L
Sbjct: 327 CDNKEDILNKALEL 340

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 90.5 bits (224), Expect = 2e-19
 Identities = 22/188 (11%), Positives = 55/188 (29%), Gaps = 7/188 (3%)

Query: 262 AIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNM-L 320
            I    +F + Y+     L+   R + A +     + L  ++         +       L
Sbjct: 89  QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 148

Query: 321 PAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGN 380
               +Y  A +         +++  V+ +   + +  +    ++L  D        +R  
Sbjct: 149 HEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQW 208

Query: 381 TYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASA------YKDSGHVEAAIKSYKQALL 434
             +E     + +Q   + +                      Y D   +E  ++   + + 
Sbjct: 209 VIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK 268

Query: 435 LRPDFPEA 442
           L P    A
Sbjct: 269 LVPHNESA 276

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score =  111 bits (280), Expect = 5e-28
 Identities = 29/230 (12%), Positives = 69/230 (30%), Gaps = 50/230 (21%)

Query: 14  SYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNM 73
           S  +A+   N                G +     D+   +   +    ++   +    N+
Sbjct: 2   SLVEAISLWN---------------EGVLAADKKDWKGAL---DAFSAVQDPHSRICFNI 43

Query: 74  ANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALA-LNP 132
              +    ++  A + +  +I    + A A+      Y +  + + A +  ++AL  L  
Sbjct: 44  GCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG 103

Query: 133 LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYY 192
             +  +  LG   K                           N+A ++ +  +  +A +  
Sbjct: 104 NQLIDYKILGLQFKLFA-------------------CEVLYNIAFMYAKKEEWKKAEEQL 144

Query: 193 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNL 242
             A  +K     + ++            +A+ C  +     P  I  G L
Sbjct: 145 ALATSMKSEPRHSKID------------KAMECVWKQKLYEPVVIPVGRL 182

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score =  109 bits (275), Expect = 2e-27
 Identities = 23/174 (13%), Positives = 49/174 (28%), Gaps = 22/174 (12%)

Query: 137 AHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAV 196
           +  N G L   +   + A   +     +Q   +    N+  ++    ++  A + +  ++
Sbjct: 8   SLWNEGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSI 64

Query: 197 KLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAV-QTRPNAIAFGNLASTYYERGQADMA 255
                   AY   G +Y        AI   + A+ Q R N                    
Sbjct: 65  NRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ------------------L 106

Query: 256 ILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTN 309
           I Y    +       E   N+           +A +      S++     +  +
Sbjct: 107 IDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKID 160

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score =  108 bits (271), Expect = 6e-27
 Identities = 28/181 (15%), Positives = 53/181 (29%), Gaps = 31/181 (17%)

Query: 259 YKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWN 318
             +AI        +  N G    D      A+  ++    +Q  H +   N+G +Y    
Sbjct: 3   LVEAI--------SLWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILK 51

Query: 319 MLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLR-IDPLAADGLVN 377
            +  A   +  ++     L+  +    ++Y Q   Y  AI    E L  +          
Sbjct: 52  NMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKI 111

Query: 378 RGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRP 437
            G  +K                       E   N+A  Y      + A +    A  ++ 
Sbjct: 112 LGLQFKLFA-------------------CEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152

Query: 438 D 438
           +
Sbjct: 153 E 153

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score =  105 bits (264), Expect = 7e-26
 Identities = 30/203 (14%), Positives = 59/203 (29%), Gaps = 33/203 (16%)

Query: 235 NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 294
            AI+  N      ++     A+  +               N+G     +  + EA + + 
Sbjct: 5   EAISLWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFT 61

Query: 295 QCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNY 354
           + ++       A    G +Y +      A    K  L    G      N  + YK  G  
Sbjct: 62  RSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG------NQLIDYKILG-- 113

Query: 355 ADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLAS 414
                     L+    A + L N    Y +      A +    A +++      H+ +  
Sbjct: 114 ----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE--PRHSKI-- 159

Query: 415 AYKDSGHVEAAIKSYKQALLLRP 437
                   + A++   +  L  P
Sbjct: 160 --------DKAMECVWKQKLYEP 174

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 93.6 bits (233), Expect = 8e-22
 Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 4/107 (3%)

Query: 341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAIT 400
             N  V+   + ++  A+  ++    +    +    N G  Y  +  +T+A + + R+I 
Sbjct: 9   LWNEGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN 65

Query: 401 IRPTMAEAHANLASAYKDSGHVEAAIKSYKQAL-LLRPDFPEATCNL 446
               +A A+      Y  +   + AIK  K+AL  LR +       L
Sbjct: 66  RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKIL 112

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score =  110 bits (277), Expect = 8e-28
 Identities = 32/198 (16%), Positives = 57/198 (28%), Gaps = 32/198 (16%)

Query: 86  AIRYYLVAIEL------RPNFADAWSNLASAYMRKGRLNEAAQCCRQALAL------NPL 133
           A  Y L   +           + A   L   Y    R +EA    +           +  
Sbjct: 5   AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTA 64

Query: 134 LVDAHSNLGNLMKAQGLVQEAYSCYLEALRI-------QPTFAIAWSNLAGLFMESGDLN 186
              A   +G + +  G    A  C+LE   +           +     +A + +  GDL 
Sbjct: 65  EHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLA 124

Query: 187 RALQYYKEAVKLKPTFPD------AYLNLGNVYKALGMPQEAIMCYQRAVQ-------TR 233
            A Q Y++++       D      A+  LG++ +      EA   + RA         + 
Sbjct: 125 GARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSE 184

Query: 234 PNAIAFGNLASTYYERGQ 251
                   L    +    
Sbjct: 185 AVNELMTRLNGLEHHHHH 202

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score =  106 bits (268), Expect = 2e-26
 Identities = 33/204 (16%), Positives = 55/204 (26%), Gaps = 31/204 (15%)

Query: 243 ASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL--- 299
           A  Y        A    +  +        A   LG     + R DEA   +         
Sbjct: 5   AHDYAL------AERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQK 58

Query: 300 ---QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAV-------TTGLSAPFNNLAVIYK 349
                +  +AL  +G +        AA   +     +           SA    +A +  
Sbjct: 59  SGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVAL 118

Query: 350 QQGNYADAISCYNEVLRID------PLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI-- 401
             G+ A A   Y + L            A      G+  ++   + +A Q ++RA  I  
Sbjct: 119 HFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178

Query: 402 ----RPTMAEAHANLASAYKDSGH 421
                  + E    L        H
Sbjct: 179 ELEDSEAVNELMTRLNGLEHHHHH 202

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score =  106 bits (267), Expect = 2e-26
 Identities = 29/199 (14%), Positives = 53/199 (26%), Gaps = 32/199 (16%)

Query: 188 ALQYYKEAVKLKPTFPD------AYLNLGNVYKALGMPQEAIMCYQRAVQT------RPN 235
           A  Y     + +           A   LG VY  +    EA   +Q   Q          
Sbjct: 5   AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTA 64

Query: 236 -AIAFGNLASTYYERGQADMAILYYKQA------IGCDPRFL-EAYNNLGNALKDVGRVD 287
              A   +       G  D A   + +       +  DP         +       G + 
Sbjct: 65  EHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLA 124

Query: 288 EAIQCYNQCLSL------QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAV------TT 335
            A Q Y + L        Q +   A   LG++  +   L  A  ++     +      + 
Sbjct: 125 GARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSE 184

Query: 336 GLSAPFNNLAVIYKQQGNY 354
            ++     L  +     ++
Sbjct: 185 AVNELMTRLNGLEHHHHHH 203

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score =  104 bits (262), Expect = 1e-25
 Identities = 27/200 (13%), Positives = 54/200 (27%), Gaps = 25/200 (12%)

Query: 43  YYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIEL------ 96
            ++ HDY +   + +  L      +     +   +      D A   +    +       
Sbjct: 2   AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD 61

Query: 97  RPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVD-------AHSNLGNLMKAQG 149
                 A   +       G  + A +C  +   L   L +           +  +    G
Sbjct: 62  HTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFG 121

Query: 150 LVQEAYSCYLEALRI------QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFP 203
            +  A   Y ++L        Q   A A+  L  L  +  +L  A Q++  A  +     
Sbjct: 122 DLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELE 181

Query: 204 D------AYLNLGNVYKALG 217
           D          L  +     
Sbjct: 182 DSEAVNELMTRLNGLEHHHH 201

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score =  102 bits (257), Expect = 5e-25
 Identities = 29/225 (12%), Positives = 62/225 (27%), Gaps = 52/225 (23%)

Query: 119 EAAQCCRQALALNPLLVD------AHSNLGNLMKAQGLVQEAYSCYLEALRI------QP 166
           EA            LL        A   LG +        EA + +    +         
Sbjct: 4   EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHT 63

Query: 167 TFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD-------AYLNLGNVYKALGMP 219
               A   +  +   +G+ + A + + E  +L  + P+           +  V    G  
Sbjct: 64  AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDL 123

Query: 220 QEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNA 279
             A   Y++++     A    +      +   A                   A+  LG+ 
Sbjct: 124 AGARQEYEKSLVY---AQQADD------QVAIAC------------------AFRGLGDL 156

Query: 280 LKDVGRVDEAIQCYNQCLSL------QPSHPQALTNLGNIYMEWN 318
            +    + EA Q + +   +        +  + +T L  +    +
Sbjct: 157 AQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHH 201

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 98.5 bits (246), Expect = 1e-23
 Identities = 30/195 (15%), Positives = 56/195 (28%), Gaps = 26/195 (13%)

Query: 15  YKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRL------EPRFAE 68
                +    +       +    +LG +Y  +  +D   A  +   +             
Sbjct: 9   ALAERQAQALLAHP-ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHR 67

Query: 69  CYGNMANAWKEKGDIDLAIRYYLVAIEL-------RPNFADAWSNLASAYMRKGRLNEAA 121
               +    +  G+ D A R +L   EL           +     +A+  +  G L  A 
Sbjct: 68  ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGAR 127

Query: 122 QCCRQALAL------NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI------QPTFA 169
           Q   ++L           +  A   LG+L + +  + EA   +L A  I           
Sbjct: 128 QEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVN 187

Query: 170 IAWSNLAGLFMESGD 184
              + L GL      
Sbjct: 188 ELMTRLNGLEHHHHH 202

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 75.0 bits (185), Expect = 2e-15
 Identities = 23/170 (13%), Positives = 49/170 (28%), Gaps = 25/170 (14%)

Query: 5   LAHQMYKSGSYKQALEHSN---SVYERNPLRTD---NLLLLGAIYYQLHDYDMCIARNEE 58
           L +       + +A           +++   T     L  +G +     ++D       E
Sbjct: 32  LGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLE 91

Query: 59  ALRLEPRF-------AECYGNMANAWKEKGDIDLAIRYYLVAIEL------RPNFADAWS 105
              L           +     +A      GD+  A + Y  ++        +   A A+ 
Sbjct: 92  ERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFR 151

Query: 106 NLASAYMRKGRLNEAAQCCRQALAL------NPLLVDAHSNLGNLMKAQG 149
            L     ++  L EA Q   +A  +      +  + +  + L  L     
Sbjct: 152 GLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHH 201

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score =  105 bits (264), Expect = 4e-27
 Identities = 17/140 (12%), Positives = 41/140 (29%), Gaps = 31/140 (22%)

Query: 164 IQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAI 223
           +       +     L  ++G+   ++  +++A++L P     +L  G     L   +EA+
Sbjct: 1   MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60

Query: 224 MCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDV 283
            CY   +                                   D    + +    +AL+ +
Sbjct: 61  DCYNYVINVIE-------------------------------DEYNKDVWAAKADALRYI 89

Query: 284 GRVDEAIQCYNQCLSLQPSH 303
              +   +       L+  H
Sbjct: 90  EGKEVEAEIAEARAKLEHHH 109

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 97.1 bits (243), Expect = 3e-24
 Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 2/100 (2%)

Query: 342 NNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI 401
               V+    GNY ++I  + + +++DP  +   + +G     + R  +A+  Y   I +
Sbjct: 10  YLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINV 69

Query: 402 RP--TMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 439
                  +  A  A A +     E   +  +    L    
Sbjct: 70  IEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 96.8 bits (242), Expect = 5e-24
 Identities = 19/140 (13%), Positives = 34/140 (24%), Gaps = 36/140 (25%)

Query: 266 DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAAS 325
             +  E Y   G    D G   E+I  + + + L P   +     G              
Sbjct: 2   VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYN--------- 52

Query: 326 YYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI--DPLAADGLVNRGNTYK 383
                                       Y +A+ CYN V+ +  D    D    + +  +
Sbjct: 53  -------------------------LERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR 87

Query: 384 EIGRVTDAIQDYIRAITIRP 403
            I       +       +  
Sbjct: 88  YIEGKEVEAEIAEARAKLEH 107

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 94.4 bits (236), Expect = 3e-23
 Identities = 15/108 (13%), Positives = 32/108 (29%), Gaps = 2/108 (1%)

Query: 64  PRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQC 123
            +  E Y        + G+   +I  +  AI+L P  +  W     A     R  EA  C
Sbjct: 3   DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDC 62

Query: 124 CRQALALNP--LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFA 169
               + +       D  +   + ++     +          +++    
Sbjct: 63  YNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 93.3 bits (233), Expect = 8e-23
 Identities = 14/107 (13%), Positives = 28/107 (26%), Gaps = 2/107 (1%)

Query: 98  PNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSC 157
               + +          G   E+     +A+ L+P         G  +      +EA  C
Sbjct: 3   DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDC 62

Query: 158 YLEALRIQP--TFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF 202
           Y   + +         W+  A             +  +   KL+   
Sbjct: 63  YNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 92.5 bits (231), Expect = 1e-22
 Identities = 18/135 (13%), Positives = 38/135 (28%), Gaps = 32/135 (23%)

Query: 235 NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 294
           N   +       Y+ G    +I  +++AI  DP   + +   G AL ++ R +EA+ CYN
Sbjct: 5   NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYN 64

Query: 295 QCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNY 354
             +++                           +                 A   +     
Sbjct: 65  YVINVIED------------------EYNKDVW--------------AAKADALRYIEGK 92

Query: 355 ADAISCYNEVLRIDP 369
                      +++ 
Sbjct: 93  EVEAEIAEARAKLEH 107

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 92.1 bits (230), Expect = 2e-22
 Identities = 10/108 (9%), Positives = 31/108 (28%), Gaps = 2/108 (1%)

Query: 130 LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRAL 189
           +     + +   G L    G   E+   + +A+++ P  +  W               A+
Sbjct: 1   MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60

Query: 190 QYYKEAVKLKP--TFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
             Y   + +       D +    +  + +   +      +   +   +
Sbjct: 61  DCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 80.2 bits (199), Expect = 3e-18
 Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 2/96 (2%)

Query: 39  LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP 98
            G + Y   +Y   I   E+A++L+P  ++ +     A       + A+  Y   I +  
Sbjct: 12  EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE 71

Query: 99  NF--ADAWSNLASAYMRKGRLNEAAQCCRQALALNP 132
           +    D W+  A A          A+       L  
Sbjct: 72  DEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEH 107

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 71.3 bits (176), Expect = 4e-15
 Identities = 12/76 (15%), Positives = 26/76 (34%)

Query: 367 IDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAI 426
           +     +     G    + G  T++I  + +AI + P  ++       A  +    E A+
Sbjct: 1   MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60

Query: 427 KSYKQALLLRPDFPEA 442
             Y   + +  D    
Sbjct: 61  DCYNYVINVIEDEYNK 76

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 47.8 bits (115), Expect = 6e-07
 Identities = 12/94 (12%), Positives = 34/94 (36%), Gaps = 2/94 (2%)

Query: 10  YKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP--RFA 67
           Y +G+Y ++++      + +P  +   L+ G   Y L  Y+  +      + +       
Sbjct: 17  YDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNK 76

Query: 68  ECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFA 101
           + +   A+A +     ++         +L  +  
Sbjct: 77  DVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 42.1 bits (100), Expect = 7e-05
 Identities = 7/46 (15%), Positives = 18/46 (39%)

Query: 401 IRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
           +     E +        D+G+   +I  +++A+ L P+  +     
Sbjct: 1   MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMK 46

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score =  111 bits (279), Expect = 5e-27
 Identities = 40/291 (13%), Positives = 86/291 (29%), Gaps = 60/291 (20%)

Query: 180 MESGDLNRALQYYKEAVKL--------KPTFPDA---YLNLGNVYKALGMPQEAIMCYQR 228
           + +  ++ A ++  +A K         KP +  A   Y      +K     ++A   Y +
Sbjct: 2   IAAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQ 61

Query: 229 AVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDE 288
             +   N  +  + A                           +A+   G  LKD+ R+ E
Sbjct: 62  EAEAHANNRSLFHAA---------------------------KAFEQAGMMLKDLQRMPE 94

Query: 289 AIQCYNQCLSLQPSHPQ------ALTNLGNIYMEWNMLPAAASYYKATLAV-----TTGL 337
           A+Q   +   +   +        AL   G +    ++  A   Y +A             
Sbjct: 95  AVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQA 154

Query: 338 SAPFNNLAVIYKQQGNYADAISCYNEVLRID------PLAADGLVNRGNTYKEIGRVTDA 391
           +      + +  +Q  + +A +   +   +       P      + +            A
Sbjct: 155 AELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214

Query: 392 IQDYIRAITI----RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 438
            +    + +I          A  +L  AY D    E  ++  +  L+   D
Sbjct: 215 QKCVRESYSIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRVCRSPLVTYMD 264

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score =   99 bits (249), Expect = 4e-23
 Identities = 43/275 (15%), Positives = 72/275 (26%), Gaps = 69/275 (25%)

Query: 112 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 171
           +   +++EA +   +A        + +      MK +     A S Y             
Sbjct: 2   IAAQKISEAHEHIAKA--------EKYLKTS-FMKWKPDYDSAASEY------------- 39

Query: 172 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD------AYLNLGNVYKALGMPQEAIMC 225
            +  A  F  +  L +A   Y +  +             A+   G + K L    EA+  
Sbjct: 40  -AKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQY 98

Query: 226 YQRAVQ------TRPNAIAFGNLASTYYERGQADMAILYYKQAIGC-----DPRFL-EAY 273
            ++A        T   A    + A    E      A+  Y+QA          R   E  
Sbjct: 99  IEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELI 158

Query: 274 NNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAV 333
                 L    + DEA     +  S              +Y E    P            
Sbjct: 159 GKASRLLVRQQKFDEAAASLQKEKS--------------MYKEMENYPTCYKKC------ 198

Query: 334 TTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRID 368
                       ++   + +Y  A  C  E   I 
Sbjct: 199 --------IAQVLVQLHRADYVAAQKCVRESYSIP 225

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 98.8 bits (246), Expect = 9e-23
 Identities = 39/250 (15%), Positives = 65/250 (26%), Gaps = 54/250 (21%)

Query: 67  AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQ 126
           A  Y   A A+K    ++ A   YL   E   N    +               AA+    
Sbjct: 36  ASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLF--------------HAAKA--- 78

Query: 127 ALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI-----QPTFAIAWSNLAGLFME 181
                          G ++K    + EA     +A  +      P  A    + AG  ME
Sbjct: 79  -----------FEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLME 127

Query: 182 SGDLNRALQYYKEAVKLKPTFPD------AYLNLGNVYKALGMPQEAIMCYQRAV----- 230
             DL++A+  Y++A  +                   +        EA    Q+       
Sbjct: 128 PLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKE 187

Query: 231 --QTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLE-----AYNNLGNALK-- 281
                               R     A    +++    P F       A  +L  A    
Sbjct: 188 MENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSI-PGFSGSEDCAALEDLLQAYDEQ 246

Query: 282 DVGRVDEAIQ 291
           D  ++    +
Sbjct: 247 DEEQLLRVCR 256

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 81.9 bits (202), Expect = 5e-17
 Identities = 24/211 (11%), Positives = 49/211 (23%), Gaps = 47/211 (22%)

Query: 39  LGAIYYQLHDYDMCIARNEEALRLEPRF------AECYGNMANAWKEKGDIDLAIRYYLV 92
               +      +       +              A+ +       K+   +  A++Y   
Sbjct: 42  AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEK 101

Query: 93  AIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQ 152
           A  +              Y+  G  + AA                    G LM+   L  
Sbjct: 102 ASVM--------------YVENGTPDTAAMA--------------LDRAGKLMEPLDL-S 132

Query: 153 EAYSCYLEALRIQPTF------AIAWSNLAGLFMESGDLNRALQYYKEAVKL------KP 200
           +A   Y +A  +          A      + L +     + A    ++   +       P
Sbjct: 133 KAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYP 192

Query: 201 TFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 231
           T     +    V         A  C + +  
Sbjct: 193 TCYKKCIAQVLVQLHRADYVAAQKCVRESYS 223

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 68.8 bits (168), Expect = 1e-12
 Identities = 32/215 (14%), Positives = 64/215 (29%), Gaps = 31/215 (14%)

Query: 9   MYKS-GSYKQALE---HSNSVYERNPLRTD---NLLLLGAIYYQLHDYDMCIARNEEALR 61
            +K+    +QA +        +  N             G +   L      +   E+A  
Sbjct: 45  AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASV 104

Query: 62  L-----EPRFAECYGNMANAWKEKGDIDLAIRYYLVAIEL------RPNFADAWSNLASA 110
           +      P  A    + A    E  D+  A+  Y  A  +          A+     +  
Sbjct: 105 MYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRL 164

Query: 111 YMRKGRLNEAAQCCRQALALN------PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI 164
            +R+ + +EAA   ++  ++       P           +   +     A  C  E+  I
Sbjct: 165 LVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSI 224

Query: 165 QPTF-----AIAWSNLAGLFMESGDLNRALQYYKE 194
            P F       A  +L   + +  D  + L+  + 
Sbjct: 225 -PGFSGSEDCAALEDLLQAY-DEQDEEQLLRVCRS 257

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 49.1 bits (117), Expect = 3e-06
 Identities = 14/121 (11%), Positives = 34/121 (28%), Gaps = 18/121 (14%)

Query: 8   QMYKSGSYKQALEH------SNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
           ++ +     +A+             ER     + +     +  +   +D   A  ++   
Sbjct: 124 KLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183

Query: 62  L------EPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFAD-----AWSNLASA 110
           +       P   +           + D   A +    +  + P F+      A  +L  A
Sbjct: 184 MYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSI-PGFSGSEDCAALEDLLQA 242

Query: 111 Y 111
           Y
Sbjct: 243 Y 243

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score =  104 bits (262), Expect = 5e-27
 Identities = 38/86 (44%), Positives = 55/86 (63%)

Query: 64  PRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQC 123
              AE + N+ NA+ ++GD D AI YY  A+EL PN A+AW NL +AY ++G  +EA + 
Sbjct: 6   GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65

Query: 124 CRQALALNPLLVDAHSNLGNLMKAQG 149
            ++AL L+P   +A  NLGN  + QG
Sbjct: 66  YQKALELDPNNAEAKQNLGNAKQKQG 91

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score =  103 bits (259), Expect = 1e-26
 Identities = 39/89 (43%), Positives = 53/89 (59%), Gaps = 2/89 (2%)

Query: 198 LKPT-FPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMA 255
           + P    +A+ NLGN Y   G   EAI  YQ+A++  PN A A+ NL + YY++G  D A
Sbjct: 3   MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62

Query: 256 ILYYKQAIGCDPRFLEAYNNLGNALKDVG 284
           I YY++A+  DP   EA  NLGNA +  G
Sbjct: 63  IEYYQKALELDPNNAEAKQNLGNAKQKQG 91

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score =  102 bits (256), Expect = 3e-26
 Identities = 36/81 (44%), Positives = 50/81 (61%)

Query: 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 295
           A A+ NL + YY++G  D AI YY++A+  DP   EA+ NLGNA    G  DEAI+ Y +
Sbjct: 9   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68

Query: 296 CLSLQPSHPQALTNLGNIYME 316
            L L P++ +A  NLGN   +
Sbjct: 69  ALELDPNNAEAKQNLGNAKQK 89

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 99.8 bits (250), Expect = 2e-25
 Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 129 ALNPL-LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNR 187
           A++P    +A  NLGN    QG   EA   Y +AL + P  A AW NL   + + GD + 
Sbjct: 2   AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61

Query: 188 ALQYYKEAVKLKPTFPDAYLNLGNVYKALG 217
           A++YY++A++L P   +A  NLGN  +  G
Sbjct: 62  AIEYYQKALELDPNNAEAKQNLGNAKQKQG 91

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 95.2 bits (238), Expect = 7e-24
 Identities = 33/86 (38%), Positives = 46/86 (53%)

Query: 98  PNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSC 157
            N A+AW NL +AY ++G  +EA +  ++AL L+P   +A  NLGN    QG   EA   
Sbjct: 6   GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65

Query: 158 YLEALRIQPTFAIAWSNLAGLFMESG 183
           Y +AL + P  A A  NL     + G
Sbjct: 66  YQKALELDPNNAEAKQNLGNAKQKQG 91

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 92.1 bits (230), Expect = 1e-22
 Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 34/120 (28%)

Query: 267 PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASY 326
               EA+ NLGNA    G  DEAI+ Y + L L P++ +A                    
Sbjct: 6   GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA-------------------- 45

Query: 327 YKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIG 386
                         + NL   Y +QG+Y +AI  Y + L +DP  A+   N GN  ++ G
Sbjct: 46  --------------WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 91

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 89.8 bits (224), Expect = 8e-22
 Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 17/99 (17%)

Query: 353 NYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANL 412
           N A+A   +               N GN Y + G   +AI+ Y +A+ + P  AEA  NL
Sbjct: 7   NSAEA---WY--------------NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL 49

Query: 413 ASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 451
            +AY   G  + AI+ Y++AL L P+  EA  NL +  Q
Sbjct: 50  GNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 87.8 bits (219), Expect = 3e-21
 Identities = 30/80 (37%), Positives = 45/80 (56%)

Query: 341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAIT 400
           + NL   Y +QG+Y +AI  Y + L +DP  A+   N GN Y + G   +AI+ Y +A+ 
Sbjct: 12  WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71

Query: 401 IRPTMAEAHANLASAYKDSG 420
           + P  AEA  NL +A +  G
Sbjct: 72  LDPNNAEAKQNLGNAKQKQG 91

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 78.2 bits (194), Expect = 8e-18
 Identities = 35/77 (45%), Positives = 49/77 (63%)

Query: 39  LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP 98
           LG  YY+  DYD  I   ++AL L+P  AE + N+ NA+ ++GD D AI YY  A+EL P
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74

Query: 99  NFADAWSNLASAYMRKG 115
           N A+A  NL +A  ++G
Sbjct: 75  NNAEAKQNLGNAKQKQG 91

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score =  101 bits (254), Expect = 4e-25
 Identities = 33/177 (18%), Positives = 65/177 (36%), Gaps = 41/177 (23%)

Query: 204 DAYLNLGNVYKALGMPQEAIMCYQRAVQ-------TRPNAIAFGNLASTYYERGQADMAI 256
            A+ NLGN +  LG  ++A++ +++ +             IA+ NL + Y   G+ + A 
Sbjct: 10  RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETAS 69

Query: 257 LYYKQA------IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNL 310
            YYK+       +       ++  +LGN    +   ++AI  + + L++     Q L + 
Sbjct: 70  EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA----QELKDR 125

Query: 311 GNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI 367
                         +                 +L   Y   GN+  A+    + L I
Sbjct: 126 IGE---------GRAC---------------WSLGNAYTALGNHDQAMHFAEKHLEI 158

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score =   99 bits (250), Expect = 2e-24
 Identities = 37/177 (20%), Positives = 64/177 (36%), Gaps = 40/177 (22%)

Query: 272 AYNNLGNALKDVGRVDEAIQCYNQCLSL------QPSHPQALTNLGNIYMEWNMLPAAAS 325
           A+ NLGN    +G   +A+  + Q L +      + +   A +NLGN Y+       A+ 
Sbjct: 11  AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASE 70

Query: 326 YYKATLAVT------TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRG 379
           YYK TL +          +    +L   Y    +Y  AI  + + L I            
Sbjct: 71  YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI------------ 118

Query: 380 NTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLR 436
              +E+                R     A  +L +AY   G+ + A+   ++ L + 
Sbjct: 119 --AQELKD--------------RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 96.8 bits (242), Expect = 2e-23
 Identities = 33/153 (21%), Positives = 59/153 (38%), Gaps = 18/153 (11%)

Query: 97  RPNFADAWSNLASAYMRKGRLNEAAQCCRQALAL------NPLLVDAHSNLGNLMKAQGL 150
           R     A+ NL + +   G   +A     Q L +            A+SNLGN     G 
Sbjct: 5   RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGE 64

Query: 151 VQEAYSCYLEALRI------QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD 204
            + A   Y + L +      +   A +  +L   +    D  +A+ Y+ + + +     D
Sbjct: 65  FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 124

Query: 205 ------AYLNLGNVYKALGMPQEAIMCYQRAVQ 231
                 A  +LGN Y ALG   +A+   ++ ++
Sbjct: 125 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 95.7 bits (239), Expect = 5e-23
 Identities = 26/151 (17%), Positives = 60/151 (39%), Gaps = 18/151 (11%)

Query: 67  AECYGNMANAWKEKGDIDLAIRYYLVAIEL------RPNFADAWSNLASAYMRKGRLNEA 120
              +GN+ N     G+   A+  +   + +      +     A+SNL +AY+  G    A
Sbjct: 9   GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETA 68

Query: 121 AQCCRQALALN------PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ------PTF 168
           ++  ++ L L        +   +  +LGN        ++A   +L+ L I          
Sbjct: 69  SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGE 128

Query: 169 AIAWSNLAGLFMESGDLNRALQYYKEAVKLK 199
             A  +L   +   G+ ++A+ + ++ +++ 
Sbjct: 129 GRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 90.7 bits (226), Expect = 3e-21
 Identities = 31/144 (21%), Positives = 53/144 (36%), Gaps = 18/144 (12%)

Query: 39  LGAIYYQLHDYDMCIARNEEALRL------EPRFAECYGNMANAWKEKGDIDLAIRYYLV 92
           LG  +Y L ++   +  +E+ L +      +      Y N+ NA+   G+ + A  YY  
Sbjct: 15  LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKK 74

Query: 93  AIEL------RPNFADAWSNLASAYMRKGRLNEAAQCCRQALALN------PLLVDAHSN 140
            + L      R   A +  +L + Y       +A     + LA+            A  +
Sbjct: 75  TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWS 134

Query: 141 LGNLMKAQGLVQEAYSCYLEALRI 164
           LGN   A G   +A     + L I
Sbjct: 135 LGNAYTALGNHDQAMHFAEKHLEI 158

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 53.7 bits (130), Expect = 1e-08
 Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 7/89 (7%)

Query: 15  YKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRL------EPRFAE 68
           YK+ L  +  + +R  +   +   LG  Y  L DY+  I  + + L +            
Sbjct: 72  YKKTLLLARQLKDR-AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130

Query: 69  CYGNMANAWKEKGDIDLAIRYYLVAIELR 97
              ++ NA+   G+ D A+ +    +E+ 
Sbjct: 131 ACWSLGNAYTALGNHDQAMHFAEKHLEIS 159

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 47.5 bits (114), Expect = 2e-06
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 6/71 (8%)

Query: 372 ADGLVNRGNTYKEIGRVTDAIQDYIRAITI------RPTMAEAHANLASAYKDSGHVEAA 425
                N GNT+  +G   DA+  + + + I      +     A++NL +AY   G  E A
Sbjct: 9   GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETA 68

Query: 426 IKSYKQALLLR 436
            + YK+ LLL 
Sbjct: 69  SEYYKKTLLLA 79

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score =  100 bits (251), Expect = 4e-25
 Identities = 20/135 (14%), Positives = 40/135 (29%), Gaps = 4/135 (2%)

Query: 158 YLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG 217
                 +          L     ++G  + A + ++    L       +L LG   ++LG
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66

Query: 218 MPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAI---GCDPRFLEAY 273
           + ++A+  Y               + A  + + G  D A   +  A       P      
Sbjct: 67  LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALA 126

Query: 274 NNLGNALKDVGRVDE 288
              G  L+ V    +
Sbjct: 127 ARAGAMLEAVTARKD 141

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 99.4 bits (248), Expect = 1e-24
 Identities = 20/124 (16%), Positives = 39/124 (31%)

Query: 93  AIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQ 152
              L  +  +    L     + G+ ++A +  +    L+         LG   ++ GL +
Sbjct: 10  LRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYE 69

Query: 153 EAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNV 212
           +A   Y     +         + A   ++ GDL+ A   +  A  L    P         
Sbjct: 70  QALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARA 129

Query: 213 YKAL 216
              L
Sbjct: 130 GAML 133

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 99.0 bits (247), Expect = 2e-24
 Identities = 20/120 (16%), Positives = 33/120 (27%)

Query: 125 RQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD 184
                L+   ++    LG      G   +A   +     +    A  +  L       G 
Sbjct: 8   AMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGL 67

Query: 185 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLAS 244
             +ALQ Y     +    P    +    +  LG    A   +  A        A   LA+
Sbjct: 68  YEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAA 127

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 95.2 bits (237), Expect = 4e-23
 Identities = 19/137 (13%), Positives = 36/137 (26%), Gaps = 4/137 (2%)

Query: 58  EALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRL 117
               L     E    +     + G  D A + +     L    A  +  L +     G  
Sbjct: 9   MLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLY 68

Query: 118 NEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAG 177
            +A Q       ++        +        G +  A S +  A  +             
Sbjct: 69  EQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ----PAHEA 124

Query: 178 LFMESGDLNRALQYYKE 194
           L   +G +  A+   K+
Sbjct: 125 LAARAGAMLEAVTARKD 141

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 92.9 bits (231), Expect = 2e-22
 Identities = 18/111 (16%), Positives = 30/111 (27%)

Query: 259 YKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWN 318
                G     LE    LG      G+ D+A + +     L     +    LG       
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66

Query: 319 MLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP 369
           +   A   Y     +         + A  + Q G+   A S +     +  
Sbjct: 67  LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAA 117

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 91.7 bits (228), Expect = 7e-22
 Identities = 18/101 (17%), Positives = 32/101 (31%)

Query: 341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAIT 400
              L     Q G + DA   +  +  +D   A   +  G   + +G    A+Q Y     
Sbjct: 21  LYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGAL 80

Query: 401 IRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE 441
           +         + A  +   G ++ A   +  A  L    P 
Sbjct: 81  MDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPA 121

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 90.6 bits (225), Expect = 1e-21
 Identities = 21/139 (15%), Positives = 48/139 (34%), Gaps = 5/139 (3%)

Query: 226 YQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVG 284
                            L    Y+ G+ D A   ++     D      +  LG   + +G
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66

Query: 285 RVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNL 344
             ++A+Q Y+    +  + P+   +    +++   L  A S + +  A    L+A     
Sbjct: 67  LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARA----LAAAQPAH 122

Query: 345 AVIYKQQGNYADAISCYNE 363
             +  + G   +A++   +
Sbjct: 123 EALAARAGAMLEAVTARKD 141

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 84.4 bits (209), Expect = 2e-19
 Identities = 23/144 (15%), Positives = 47/144 (32%), Gaps = 10/144 (6%)

Query: 13  GSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGN 72
           G+              +    + L  LG   YQ   +D      +    L+   A  +  
Sbjct: 5   GTLAMLRG-------LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLG 57

Query: 73  MANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALAL-- 130
           +    +  G  + A++ Y     +  N      + A  +++ G L+ A      A AL  
Sbjct: 58  LGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAA 117

Query: 131 -NPLLVDAHSNLGNLMKAQGLVQE 153
             P      +  G +++A    ++
Sbjct: 118 AQPAHEALAARAGAMLEAVTARKD 141

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 73.6 bits (181), Expect = 1e-15
 Identities = 14/86 (16%), Positives = 29/86 (33%)

Query: 361 YNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 420
              +  +     + L   G    + G+  DA + +     +    A     L +  +  G
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66

Query: 421 HVEAAIKSYKQALLLRPDFPEATCNL 446
             E A++SY    L+  + P    + 
Sbjct: 67  LYEQALQSYSYGALMDINEPRFPFHA 92

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 69.0 bits (169), Expect = 6e-14
 Identities = 20/116 (17%), Positives = 37/116 (31%)

Query: 4   ALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLE 63
           AL    Y++G +  A +   ++   +       L LGA    L  Y+  +        ++
Sbjct: 23  ALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD 82

Query: 64  PRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNE 119
                   + A    + GD+D A   +  A  L        +  A A      +  
Sbjct: 83  INEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTA 138

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 11/82 (13%), Positives = 20/82 (24%), Gaps = 13/82 (15%)

Query: 377 NRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLR 436
           + G T                   +     E    L      +G  + A K ++   +L 
Sbjct: 2   SDGGTLAM-------------LRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD 48

Query: 437 PDFPEATCNLLHTLQCVCSWED 458
                    L    Q +  +E 
Sbjct: 49  HYDARYFLGLGACRQSLGLYEQ 70

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score =  104 bits (260), Expect = 1e-24
 Identities = 40/305 (13%), Positives = 73/305 (23%), Gaps = 47/305 (15%)

Query: 6   AHQMYKSGSYKQALEHSNSVYERNP-LRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64
               +  GSY+Q +  +  V   +P    +  + L   Y     Y + +   + +   E 
Sbjct: 6   VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPE- 64

Query: 65  RFAECYGNMANAWKEKGDIDLAIRYY--LVAIELRPNFADAWSNLASAYMRKGRLNEAAQ 122
              +     A         D  +      ++  +           AS Y      + A +
Sbjct: 65  --LQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALR 122

Query: 123 CCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLA--GLFM 180
              Q  +L        +    ++     +  A     +         +     A   L  
Sbjct: 123 TLHQGDSLE-----CMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAA 177

Query: 181 ESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFG 240
               L  A   ++E                  + A G  + A    Q A+          
Sbjct: 178 GGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD--------- 228

Query: 241 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCL-SL 299
                                    D    E   NL    + +G+  E    Y   L   
Sbjct: 229 ------------------------KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264

Query: 300 QPSHP 304
             SHP
Sbjct: 265 HRSHP 269

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 98.3 bits (244), Expect = 1e-22
 Identities = 32/236 (13%), Positives = 68/236 (28%), Gaps = 13/236 (5%)

Query: 5   LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR--L 62
           L         Y   L+    +   +      + +           D  +A  +  +   +
Sbjct: 40  LYRAYLAQRKYGVVLDE---IKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSV 96

Query: 63  EPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQ 122
           +          A+ +    + D A+R       L        +      ++  RL+ A +
Sbjct: 97  DVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLE-----CMAMTVQILLKLDRLDLARK 151

Query: 123 CCRQALALNPLLVDAHSNLG--NLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFM 180
             ++    +             +L      +Q+AY  + E         +  +  A   M
Sbjct: 152 ELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHM 211

Query: 181 ESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCY-QRAVQTRPN 235
             G    A    +EA+      P+  +NL  + + LG P E    Y  +      +
Sbjct: 212 AQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 96.7 bits (240), Expect = 4e-22
 Identities = 36/264 (13%), Positives = 65/264 (24%), Gaps = 13/264 (4%)

Query: 183 GDLNRALQYYKEAVKLKPTF-PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGN 241
           G   + +   +      P    +  + L   Y A       +   + +  + P   A   
Sbjct: 13  GSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS--SAPELQAVRM 70

Query: 242 LASTYYERGQADMAILYYKQ--AIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 299
            A       + D  +    +  +   D           +        D A++  +Q  SL
Sbjct: 71  FAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSL 130

Query: 300 QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQG--NYADA 357
           +            I ++ + L  A    K         +      A +    G     DA
Sbjct: 131 ECMA-----MTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDA 185

Query: 358 ISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYK 417
              + E+          L  +   +   GR   A      A+       E   NL    +
Sbjct: 186 YYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQ 245

Query: 418 DSGHVEAAIKSYKQALL-LRPDFP 440
             G        Y   L       P
Sbjct: 246 HLGKPPEVTNRYLSQLKDAHRSHP 269

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 89.0 bits (220), Expect = 2e-19
 Identities = 40/254 (15%), Positives = 75/254 (29%), Gaps = 15/254 (5%)

Query: 204 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN--AIAFGNLASTYYERGQADMAILYYKQ 261
           D   ++ N +  +G  Q+ I   QR   + P         L   Y  + +  + +   K 
Sbjct: 1   DELFDVKNAF-YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP 59

Query: 262 AIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCL--SLQPSHPQALTNLGNIYMEWNM 319
           +       L+A       L    R D  +   ++ +  S+  ++   L    +IY     
Sbjct: 60  S---SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQN 116

Query: 320 LPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRG 379
             AA        ++             I  +      A     ++   D  A    +   
Sbjct: 117 PDAALRTLHQGDSLE-----CMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATA 171

Query: 380 --NTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRP 437
             +      ++ DA   +                 A+ +   G  EAA    ++AL    
Sbjct: 172 WVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231

Query: 438 DFPEATCNLLHTLQ 451
             PE   NL+   Q
Sbjct: 232 GHPETLINLVVLSQ 245

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 45.1 bits (106), Expect = 5e-05
 Identities = 12/100 (12%), Positives = 26/100 (26%), Gaps = 1/100 (1%)

Query: 1   MHMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEAL 60
           +  A           + A      + ++       L    A +     ++      +EAL
Sbjct: 168 LATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEAL 227

Query: 61  RLEPRFAECYGNMANAWKEKGDIDLAIRYYL-VAIELRPN 99
             +    E   N+    +  G        YL    +   +
Sbjct: 228 DKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 96.4 bits (240), Expect = 9e-24
 Identities = 17/105 (16%), Positives = 31/105 (29%)

Query: 100 FADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYL 159
           + +       + ++   L EAA          P   +A  +LG           A     
Sbjct: 16  YHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALN 75

Query: 160 EALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD 204
            A  + P      + LA       + N AL   +  +  +P +  
Sbjct: 76  HARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 93.3 bits (232), Expect = 1e-22
 Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 1/106 (0%)

Query: 131 NPLL-VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRAL 189
           NP +  +     G  M     + EA   +    + +P    AW +L     E+     A+
Sbjct: 12  NPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAI 71

Query: 190 QYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
                A  L P     +  L   +        A+   +  + ++P 
Sbjct: 72  IALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 92.9 bits (231), Expect = 2e-22
 Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 1/103 (0%)

Query: 204 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQA 262
           +  +  G     L    EA + ++   Q  P    A+ +L  T  E  +  +AI+    A
Sbjct: 18  ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHA 77

Query: 263 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQ 305
              DP+ +  +  L  +  +    + A+      L  QP + Q
Sbjct: 78  RMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 92.5 bits (230), Expect = 2e-22
 Identities = 22/99 (22%), Positives = 41/99 (41%)

Query: 343 NLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR 402
              +   +  N A+A   +  V + +P   +   + G T  E  +   AI     A  + 
Sbjct: 22  EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81

Query: 403 PTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE 441
           P     HA LA ++ +  +  AA+ S +  LL +P + +
Sbjct: 82  PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 90.2 bits (224), Expect = 1e-21
 Identities = 25/116 (21%), Positives = 40/116 (34%), Gaps = 4/116 (3%)

Query: 21  HSNSVY---ERNP-LRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANA 76
            +N+ Y     NP +  +N +  G    +L +        E   + EP   E + ++   
Sbjct: 1   QNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLT 60

Query: 77  WKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNP 132
             E     LAI     A  L P      + LA ++  +   N A    R  L   P
Sbjct: 61  QAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 116

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 89.0 bits (221), Expect = 3e-21
 Identities = 17/93 (18%), Positives = 30/93 (32%)

Query: 241 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300
               +  +      A L ++     +P   EA+ +LG    +  +   AI   N    L 
Sbjct: 22  EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81

Query: 301 PSHPQALTNLGNIYMEWNMLPAAASYYKATLAV 333
           P        L   +   +   AA +  +A L  
Sbjct: 82  PKDIAVHAALAVSHTNEHNANAALASLRAWLLS 114

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 88.7 bits (220), Expect = 4e-21
 Identities = 15/98 (15%), Positives = 30/98 (30%)

Query: 72  NMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALN 131
               +  +  ++  A   +    +  P   +AW +L        +   A      A  L+
Sbjct: 22  EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81

Query: 132 PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFA 169
           P  +  H+ L      +     A +     L  QP + 
Sbjct: 82  PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 74.0 bits (182), Expect = 5e-16
 Identities = 16/136 (11%), Positives = 31/136 (22%), Gaps = 34/136 (25%)

Query: 268 RFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYY 327
            + E     G ++  +  + EA   +      +P   +A  +LG    E           
Sbjct: 15  MYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE----------- 63

Query: 328 KATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGR 387
                                        AI   N    +DP           ++     
Sbjct: 64  -----------------------NEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 100

Query: 388 VTDAIQDYIRAITIRP 403
              A+      +  +P
Sbjct: 101 ANAALASLRAWLLSQP 116

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 66.3 bits (162), Expect = 3e-13
 Identities = 12/77 (15%), Positives = 26/77 (33%)

Query: 370 LAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSY 429
           +  +  +  G +  ++  + +A   +       P   EA  +L     ++     AI + 
Sbjct: 15  MYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIAL 74

Query: 430 KQALLLRPDFPEATCNL 446
             A +L P        L
Sbjct: 75  NHARMLDPKDIAVHAAL 91

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 65.9 bits (161), Expect = 3e-13
 Identities = 16/101 (15%), Positives = 36/101 (35%)

Query: 2   HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
            M     M K  +  +A     +V ++ P R +    LG    +     + I     A  
Sbjct: 20  PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM 79

Query: 62  LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFAD 102
           L+P+    +  +A +   + + + A+      +  +P +  
Sbjct: 80  LDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 96.5 bits (241), Expect = 1e-23
 Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 1/124 (0%)

Query: 194 EAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQA 252
              +      +     GN    +   + A+  Y +A++  P NA+ F N A+ Y + G  
Sbjct: 3   LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY 62

Query: 253 DMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGN 312
             A+   ++AI  DP + +AY  +G AL  + +  EA+  Y + L L P +    +NL  
Sbjct: 63  AGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKI 122

Query: 313 IYME 316
             ++
Sbjct: 123 AELK 126

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 96.1 bits (240), Expect = 1e-23
 Identities = 32/115 (27%), Positives = 52/115 (45%)

Query: 62  LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA 121
            +   AE      N   +  + + A+ +Y  AIEL P  A  + N A+AY + G    A 
Sbjct: 7   EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAV 66

Query: 122 QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLA 176
           Q C +A+ ++P    A+  +G  + +     EA + Y +AL + P      SNL 
Sbjct: 67  QDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLK 121

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 93.0 bits (232), Expect = 1e-22
 Identities = 27/124 (21%), Positives = 52/124 (41%), Gaps = 1/124 (0%)

Query: 130 LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRAL 189
            +    +     GN        + A   Y +A+ + P  A+ + N A  + + G+   A+
Sbjct: 7   EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAV 66

Query: 190 QYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYE 248
           Q  + A+ + P +  AY  +G    +L    EA+  Y++A++  P N     NL     +
Sbjct: 67  QDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELK 126

Query: 249 RGQA 252
             +A
Sbjct: 127 LREA 130

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 87.3 bits (217), Expect = 2e-20
 Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 7/111 (6%)

Query: 343 NLAVIYKQQGN-------YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDY 395
             A   K +GN       +  A+  Y + + ++P  A    NR   Y ++G    A+QD 
Sbjct: 10  AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDC 69

Query: 396 IRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
            RAI I P  ++A+  +  A         A+  YK+AL L PD      NL
Sbjct: 70  ERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNL 120

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 84.6 bits (210), Expect = 1e-19
 Identities = 29/152 (19%), Positives = 47/152 (30%), Gaps = 34/152 (22%)

Query: 266 DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAAS 325
           D    E     GN    V   + A+  Y + + L P++                      
Sbjct: 8   DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVY------------------- 48

Query: 326 YYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEI 385
                          F N A  Y + GNYA A+      + IDP  +      G     +
Sbjct: 49  ---------------FCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSL 93

Query: 386 GRVTDAIQDYIRAITIRPTMAEAHANLASAYK 417
            +  +A+  Y +A+ + P      +NL  A  
Sbjct: 94  NKHVEAVAYYKKALELDPDNETYKSNLKIAEL 125

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 83.0 bits (206), Expect = 5e-19
 Identities = 29/128 (22%), Positives = 57/128 (44%), Gaps = 3/128 (2%)

Query: 27  ERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLA 86
           E +    + L   G    ++ +++  +    +A+ L P  A  + N A A+ + G+   A
Sbjct: 6   EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGA 65

Query: 87  IRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMK 146
           ++    AI + P ++ A+  +  A     +  EA    ++AL L+P      SNL     
Sbjct: 66  VQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKI--- 122

Query: 147 AQGLVQEA 154
           A+  ++EA
Sbjct: 123 AELKLREA 130

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 72.2 bits (178), Expect = 3e-15
 Identities = 21/152 (13%), Positives = 46/152 (30%), Gaps = 34/152 (22%)

Query: 235 NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 294
            A       +   +    + A+ +Y +AI  +P     + N   A   +G    A+Q   
Sbjct: 11  EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCE 70

Query: 295 QCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNY 354
           + + + P                       +Y KA           +  + +       +
Sbjct: 71  RAICIDP-----------------------AYSKA-----------YGRMGLALSSLNKH 96

Query: 355 ADAISCYNEVLRIDPLAADGLVNRGNTYKEIG 386
            +A++ Y + L +DP       N      ++ 
Sbjct: 97  VEAVAYYKKALELDPDNETYKSNLKIAELKLR 128

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 61.5 bits (150), Expect = 2e-11
 Identities = 20/76 (26%), Positives = 36/76 (47%)

Query: 367 IDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAI 426
            D   A+ L   GN   ++     A+  Y +AI + P  A    N A+AY   G+   A+
Sbjct: 7   EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAV 66

Query: 427 KSYKQALLLRPDFPEA 442
           +  ++A+ + P + +A
Sbjct: 67  QDCERAICIDPAYSKA 82

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 95.9 bits (239), Expect = 1e-23
 Identities = 15/114 (13%), Positives = 34/114 (29%), Gaps = 3/114 (2%)

Query: 185 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLA 243
           +    +  +  +            LG  Y        A+   + A+   P  ++A+  L 
Sbjct: 1   MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLG 60

Query: 244 STYYERGQADMAILYYKQAIGCDPRF--LEAYNNLGNALKDVGRVDEAIQCYNQ 295
            T   +G    A   ++  +         +    L   L+ + R D     ++ 
Sbjct: 61  KTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDALEHHHHH 114

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 92.8 bits (231), Expect = 1e-22
 Identities = 24/111 (21%), Positives = 39/111 (35%), Gaps = 3/111 (2%)

Query: 220 QEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGN 278
           Q      +  +     N +    L  TY E  Q D A+ + + A+  DP +  A+  LG 
Sbjct: 2   QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61

Query: 279 ALKDVGRVDEAIQCYNQCLSLQPSH--PQALTNLGNIYMEWNMLPAAASYY 327
            L+  G    A Q +   L+   S    Q +  L           A   ++
Sbjct: 62  TLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDALEHHH 112

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 89.3 bits (222), Expect = 2e-21
 Identities = 18/108 (16%), Positives = 30/108 (27%), Gaps = 2/108 (1%)

Query: 53  IARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM 112
             R E  L            +   + E    D A+ +   A++  P ++ AW  L     
Sbjct: 5   TERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQ 64

Query: 113 RKGRLNEAAQCCRQALALNPLLVD--AHSNLGNLMKAQGLVQEAYSCY 158
            +G    A Q     LA      D      L   ++           +
Sbjct: 65  GQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDALEHHH 112

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 85.5 bits (212), Expect = 4e-20
 Identities = 19/113 (16%), Positives = 31/113 (27%), Gaps = 2/113 (1%)

Query: 117 LNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLA 176
           +    +     LA     +     LG           A      AL   PT+++AW  L 
Sbjct: 1   MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLG 60

Query: 177 GLFMESGDLNRALQYYKEAVKLKPTFPD--AYLNLGNVYKALGMPQEAIMCYQ 227
                 GD   A Q ++  +    +  D      L    + L         + 
Sbjct: 61  KTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDALEHHHH 113

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 80.8 bits (200), Expect = 2e-18
 Identities = 14/81 (17%), Positives = 22/81 (27%)

Query: 86  AIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLM 145
                   +    +       L   Y    + + A    R AL  +P    A   LG  +
Sbjct: 4   ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63

Query: 146 KAQGLVQEAYSCYLEALRIQP 166
           + QG    A   +   L    
Sbjct: 64  QGQGDRAGARQAWESGLAAAQ 84

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 80.1 bits (198), Expect = 3e-18
 Identities = 14/87 (16%), Positives = 25/87 (28%)

Query: 356 DAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASA 415
                   +L             G TY E  +   A+     A+   PT + A   L   
Sbjct: 3   AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKT 62

Query: 416 YKDSGHVEAAIKSYKQALLLRPDFPEA 442
            +  G    A ++++  L       + 
Sbjct: 63  LQGQGDRAGARQAWESGLAAAQSRGDQ 89

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 79.3 bits (196), Expect = 7e-18
 Identities = 15/110 (13%), Positives = 31/110 (28%), Gaps = 2/110 (1%)

Query: 255 AILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIY 314
                +  +      +     LG    +  + D A+      L   P++  A   LG   
Sbjct: 4   ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63

Query: 315 MEWNMLPAAASYYKATLAV--TTGLSAPFNNLAVIYKQQGNYADAISCYN 362
                   A   +++ LA   + G       L V  ++          ++
Sbjct: 64  QGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDALEHHHH 113

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 72.4 bits (178), Expect = 2e-15
 Identities = 16/148 (10%), Positives = 31/148 (20%), Gaps = 36/148 (24%)

Query: 286 VDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLA 345
           +    +     L+    +      LG  Y E                             
Sbjct: 1   MQAITERLEAMLAQGTDNMLLRFTLGKTYAE----------------------------- 31

Query: 346 VIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM 405
                   +  A+      L  DP  +      G T +  G    A Q +   +    + 
Sbjct: 32  -----HEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSR 86

Query: 406 AEAHA--NLASAYKDSGHVEAAIKSYKQ 431
            +      L    +     +A    +  
Sbjct: 87  GDQQVVKELQVFLRRLAREDALEHHHHH 114

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 62.0 bits (151), Expect = 9e-12
 Identities = 15/115 (13%), Positives = 32/115 (27%), Gaps = 9/115 (7%)

Query: 14  SYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNM 73
             +  L        +          LG  Y +   +D  +     AL  +P ++  +  +
Sbjct: 7   RLEAMLA-------QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWL 59

Query: 74  ANAWKEKGDIDLAIRYYLVAIELRPNFAD--AWSNLASAYMRKGRLNEAAQCCRQ 126
               + +GD   A + +   +    +  D      L     R  R +        
Sbjct: 60  GKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDALEHHHHH 114

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 61.6 bits (150), Expect = 1e-11
 Identities = 12/62 (19%), Positives = 19/62 (30%)

Query: 390 DAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHT 449
              +     +            L   Y +    +AA+   + AL   P +  A   L  T
Sbjct: 3   AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKT 62

Query: 450 LQ 451
           LQ
Sbjct: 63  LQ 64

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 96.9 bits (241), Expect = 1e-23
 Identities = 22/136 (16%), Positives = 40/136 (29%)

Query: 81  GDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSN 140
           G +        +  E+  +  +   +LA    + G   +A    +    L+         
Sbjct: 1   GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60

Query: 141 LGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKP 200
           LG   +A G    A   Y     +         + A   ++ G+L  A      A +L  
Sbjct: 61  LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120

Query: 201 TFPDAYLNLGNVYKAL 216
             P+       V   L
Sbjct: 121 NXPEFXELSTRVSSML 136

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 92.7 bits (230), Expect = 3e-22
 Identities = 17/137 (12%), Positives = 35/137 (25%), Gaps = 3/137 (2%)

Query: 115 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 174
           G L            ++   ++   +L       G  ++A+  +     +    +  +  
Sbjct: 1   GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60

Query: 175 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ--- 231
           L       G  + A+  Y     +    P    +        G   EA      A +   
Sbjct: 61  LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120

Query: 232 TRPNAIAFGNLASTYYE 248
             P         S+  E
Sbjct: 121 NXPEFXELSTRVSSMLE 137

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 88.4 bits (219), Expect = 1e-20
 Identities = 20/158 (12%), Positives = 34/158 (21%), Gaps = 11/158 (6%)

Query: 250 GQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTN 309
           G                   LE   +L       G  ++A   +     L     +    
Sbjct: 1   GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60

Query: 310 LGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP 369
           LG           A   Y     +         + A    Q G  A+A S       +  
Sbjct: 61  LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120

Query: 370 LAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAE 407
              +                  +   + AI ++  M  
Sbjct: 121 NXPEFXELSTR-----------VSSMLEAIKLKKEMKH 147

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 88.0 bits (218), Expect = 2e-20
 Identities = 20/144 (13%), Positives = 41/144 (28%), Gaps = 11/144 (7%)

Query: 57  EEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGR 116
                +     E   ++A    + G  + A   +     L    +  +  L +     G+
Sbjct: 11  AMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQ 70

Query: 117 LNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLA 176
            + A         ++        +    +   G + EA S    A  +            
Sbjct: 71  YDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXP------- 123

Query: 177 GLFMESGDLNRALQYYKEAVKLKP 200
               E  +L+  +    EA+KLK 
Sbjct: 124 ----EFXELSTRVSSMLEAIKLKK 143

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 85.3 bits (211), Expect = 1e-19
 Identities = 21/123 (17%), Positives = 38/123 (30%)

Query: 320 LPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRG 379
           L +          +++       +LA    Q G Y DA   +  +  +D   +   +  G
Sbjct: 3   LGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLG 62

Query: 380 NTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 439
              + +G+   AI  Y     +         + A      G +  A      A  L  + 
Sbjct: 63  ACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANX 122

Query: 440 PEA 442
           PE 
Sbjct: 123 PEF 125

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 81.9 bits (202), Expect = 2e-18
 Identities = 22/145 (15%), Positives = 45/145 (31%), Gaps = 5/145 (3%)

Query: 221 EAIMCYQRAVQTRPNAI-AFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNA 279
                     +   + +    +LA   Y+ G  + A   ++     D      +  LG  
Sbjct: 5   SGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGAC 64

Query: 280 LKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSA 339
            + +G+ D AI  Y+    +    P+   +     ++   L  A S           L A
Sbjct: 65  RQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQE----LIA 120

Query: 340 PFNNLAVIYKQQGNYADAISCYNEV 364
                  +  +  +  +AI    E+
Sbjct: 121 NXPEFXELSTRVSSMLEAIKLKKEM 145

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 78.0 bits (192), Expect = 5e-17
 Identities = 27/154 (17%), Positives = 47/154 (30%), Gaps = 18/154 (11%)

Query: 13  GSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGN 72
           G+     E S+   E+       L  L    YQ   Y+      +    L+   +  +  
Sbjct: 8   GTIAMLNEISSDTLEQ-------LYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60

Query: 73  MANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNP 132
           +    +  G  DLAI  Y     +         + A   ++ G L EA      A  L  
Sbjct: 61  LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120

Query: 133 LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP 166
              +       +           S  LEA++++ 
Sbjct: 121 NXPEFXELSTRV-----------SSMLEAIKLKK 143

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 69.9 bits (171), Expect = 3e-14
 Identities = 21/119 (17%), Positives = 40/119 (33%)

Query: 4   ALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLE 63
           +LA   Y+SG Y+ A     ++   +   +   L LGA    +  YD+ I        ++
Sbjct: 26  SLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85

Query: 64  PRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQ 122
                   + A    + G++  A     +A EL  N  +              +    +
Sbjct: 86  IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIKLKKE 144

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 69.2 bits (169), Expect = 6e-14
 Identities = 14/112 (12%), Positives = 29/112 (25%)

Query: 352 GNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHAN 411
           G           +  I     + L +      + G   DA   +     +    +     
Sbjct: 1   GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60

Query: 412 LASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMF 463
           L +  +  G  + AI SY    ++    P    +    L       + +   
Sbjct: 61  LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGL 112

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score =  102 bits (255), Expect = 2e-23
 Identities = 50/319 (15%), Positives = 86/319 (26%), Gaps = 44/319 (13%)

Query: 67  AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAW-----SNLASAYMRKGRLNEAA 121
           AE     A      G+ D A R   +A+E  P           S L      KG L  + 
Sbjct: 14  AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSL 73

Query: 122 QCCRQALALN------PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ--------PT 167
              +Q   +          + +      ++ AQG +Q A+    +A ++         P 
Sbjct: 74  ALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPM 133

Query: 168 FAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDA-----YLNLGNVYKALGMPQEA 222
                   A L      L+ A    +  +++  ++           L     A G    A
Sbjct: 134 HEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNA 193

Query: 223 IMCYQRAVQTRPN--------AIAFGNLASTYYERGQADMAILYYKQAI----GCDPRFL 270
                R      N        + A       +   G    A  + +         +    
Sbjct: 194 RSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ 253

Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLS------LQPSHPQALTNLGNIYMEWNMLPAAA 324
             + N+  A   +G  + A     +         L     + L  L  +Y +      A 
Sbjct: 254 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQ 313

Query: 325 SYYKA--TLAVTTGLSAPF 341
                   LA  TG  + F
Sbjct: 314 RVLLDALKLANRTGFISHF 332

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 98.5 bits (245), Expect = 3e-22
 Identities = 36/311 (11%), Positives = 76/311 (24%), Gaps = 42/311 (13%)

Query: 31  LRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR-----FAECYGNMANAWKEKGDIDL 85
           +  +   L   +     + D      + AL   P             +      KG++  
Sbjct: 12  MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTR 71

Query: 86  AIRYYLVAIEL------RPNFADAWSNLASAYMRKGRLNEAAQCCRQALAL--------N 131
           ++       ++            +    +     +G L  A +   +A  L         
Sbjct: 72  SLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL 131

Query: 132 PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI-----QPTFAIAWSNLAGLFMESGDLN 186
           P+          L+ A   + EA +     + +             + L    +  GDL+
Sbjct: 132 PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLD 191

Query: 187 RALQYYKEAVKL-------KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ-----TRP 234
            A         L            +A       ++  G    A    +   +        
Sbjct: 192 NARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF 251

Query: 235 NAIAFGNLASTYYERGQADMAILYYKQAI------GCDPRFLEAYNNLGNALKDVGRVDE 288
               + N+A      G+ + A +  ++                    L       GR  +
Sbjct: 252 LQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSD 311

Query: 289 AIQCYNQCLSL 299
           A +     L L
Sbjct: 312 AQRVLLDALKL 322

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 85.0 bits (210), Expect = 1e-17
 Identities = 41/303 (13%), Positives = 73/303 (24%), Gaps = 42/303 (13%)

Query: 175 LAGLFMESGDLNRALQYYKEAVKLKPTFPD-----AYLNLGNVYKALGMPQEAIMCYQRA 229
            A + +  G+ + A +  K A++  P         A   LG V    G    ++   Q+ 
Sbjct: 20  RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQT 79

Query: 230 VQTRP-------NAIAFGNLASTYYERGQADMAILYYKQAI--------GCDPRFLEAYN 274
            Q             +    +   + +G    A    ++A            P       
Sbjct: 80  EQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVR 139

Query: 275 NLGNALKDVGRVDEAIQCYNQCLSL-----QPSHPQALTNLGNIYMEWNMLPAAASYYKA 329
                L    R+DEA       + +          Q L  L    +    L  A S    
Sbjct: 140 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNR 199

Query: 330 TLAVTTGLSAPF-------NNLAVIYKQQGNYADAISCYNEVLRID----PLAADGLVNR 378
              +                   + ++  G+ A A +      + +            N 
Sbjct: 200 LENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259

Query: 379 GNTYKEIGRVTDAIQDYIRAITI------RPTMAEAHANLASAYKDSGHVEAAIKSYKQA 432
                 +G    A                   +      L   Y  +G    A +    A
Sbjct: 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 319

Query: 433 LLL 435
           L L
Sbjct: 320 LKL 322

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 67.7 bits (165), Expect = 4e-12
 Identities = 31/207 (14%), Positives = 60/207 (28%), Gaps = 23/207 (11%)

Query: 15  YKQALEHSNSVY-ERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRL-----EPRFAE 68
            ++A +  N  + E+ P+    + +   + +     D   A     + +       +  +
Sbjct: 116 QEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175

Query: 69  CYGNMANAWKEKGDIDLAIRYYLVAIEL-------RPNFADAWSNLASAYMRKGRLNEAA 121
           C   +      +GD+D A         L           ++A       +   G    AA
Sbjct: 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAA 235

Query: 122 QCCRQAL----ALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI------QPTFAIA 171
              R       A N  L     N+       G  + A     E                 
Sbjct: 236 NWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRN 295

Query: 172 WSNLAGLFMESGDLNRALQYYKEAVKL 198
              L  L+ ++G  + A +   +A+KL
Sbjct: 296 LLLLNQLYWQAGRKSDAQRVLLDALKL 322

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 49.2 bits (117), Expect = 3e-06
 Identities = 19/170 (11%), Positives = 42/170 (24%), Gaps = 43/170 (25%)

Query: 284 GRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNN 343
           G  DEA +     L                      LP    Y +             + 
Sbjct: 28  GNPDEAERLAKLALEE--------------------LPPGWFYSRIVAT---------SV 58

Query: 344 LAVIYKQQGNYADAISCYNEVLRI------DPLAADGLVNRGNTYKEIGRVTDAIQDYIR 397
           L  +   +G    +++   +  ++         A   L+ +       G +  A +   +
Sbjct: 59  LGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEK 118

Query: 398 AITIR--------PTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 439
           A  +         P         A        ++ A  S +  + +   +
Sbjct: 119 AFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY 168

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 45.4 bits (107), Expect = 6e-05
 Identities = 13/106 (12%), Positives = 29/106 (27%), Gaps = 11/106 (10%)

Query: 344 LAVIYKQQGNYADAISCYNEVLRIDPLAAD-----GLVNRGNTYKEIGRVTDAIQDYIRA 398
            A +    GN  +A       L   P              G      G +T ++    + 
Sbjct: 20  RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQT 79

Query: 399 ITI------RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 438
             +            +    +      G ++ A ++ ++A  L  +
Sbjct: 80  EQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINE 125

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 96.1 bits (239), Expect = 6e-23
 Identities = 20/154 (12%), Positives = 60/154 (38%), Gaps = 3/154 (1%)

Query: 72  NMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALN 131
           +  + +  + + +  ++     I   P  ++ W+ L   Y+ +   + +    RQAL L 
Sbjct: 15  DPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR 74

Query: 132 PLLVDAHSNLGNLMKAQG---LVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRA 188
               + ++ L  ++  Q    +  +  +   +AL +      A   LA       +  +A
Sbjct: 75  GENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQA 134

Query: 189 LQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEA 222
           ++ +++ + L     +    + ++  A  + + +
Sbjct: 135 IELWQKVMDLNSPRINRTQLVESINMAKLLQRRS 168

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 92.2 bits (229), Expect = 1e-21
 Identities = 26/141 (18%), Positives = 53/141 (37%), Gaps = 4/141 (2%)

Query: 179 FMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAI 237
           F    +    LQ  ++ ++  P   + +  LG  Y        +++ Y++A+Q R  NA 
Sbjct: 20  FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE 79

Query: 238 AFGNLASTYYERGQADM---AILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 294
            +  LA+  Y +    M         +A+  D   + A   L +         +AI+ + 
Sbjct: 80  LYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQ 139

Query: 295 QCLSLQPSHPQALTNLGNIYM 315
           + + L          + +I M
Sbjct: 140 KVMDLNSPRINRTQLVESINM 160

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 85.7 bits (212), Expect = 2e-19
 Identities = 20/143 (13%), Positives = 44/143 (30%), Gaps = 3/143 (2%)

Query: 98  PNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSC 157
                   +    +  +       Q  +  +  NP   +  + LG     Q     +   
Sbjct: 7   RAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLA 66

Query: 158 YLEALRIQPTFAIAWSNLAGLFMESGD---LNRALQYYKEAVKLKPTFPDAYLNLGNVYK 214
           Y +AL+++   A  ++ LA +           +      +A+ L      A + L +   
Sbjct: 67  YRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAF 126

Query: 215 ALGMPQEAIMCYQRAVQTRPNAI 237
                 +AI  +Q+ +      I
Sbjct: 127 MQANYAQAIELWQKVMDLNSPRI 149

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 78.8 bits (194), Expect = 5e-17
 Identities = 23/147 (15%), Positives = 47/147 (31%), Gaps = 6/147 (4%)

Query: 226 YQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGR 285
           +Q             +    +  +   +  +   +  I  +P+  E +  LG        
Sbjct: 3   WQAVRAEYQRQ---RDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQND 59

Query: 286 VDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWN---MLPAAASYYKATLAVTTGLSAPFN 342
              ++  Y Q L L+  + +    L  +        M     +     LA+ +       
Sbjct: 60  YSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALM 119

Query: 343 NLAVIYKQQGNYADAISCYNEVLRIDP 369
            LA     Q NYA AI  + +V+ ++ 
Sbjct: 120 LLASDAFMQANYAQAIELWQKVMDLNS 146

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 78.0 bits (192), Expect = 9e-17
 Identities = 18/151 (11%), Positives = 46/151 (30%), Gaps = 3/151 (1%)

Query: 267 PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASY 326
               +   +  +        +  +Q     +   P + +    LG  Y+  N    +   
Sbjct: 7   RAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLA 66

Query: 327 YKATLAVTTGLSAPFNNLAVIYKQQGNY---ADAISCYNEVLRIDPLAADGLVNRGNTYK 383
           Y+  L +    +  +  LA +   Q +    A   +  ++ L +D      L+   +   
Sbjct: 67  YRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAF 126

Query: 384 EIGRVTDAIQDYIRAITIRPTMAEAHANLAS 414
                  AI+ + + + +          + S
Sbjct: 127 MQANYAQAIELWQKVMDLNSPRINRTQLVES 157

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 74.5 bits (183), Expect = 1e-15
 Identities = 30/152 (19%), Positives = 56/152 (36%), Gaps = 3/152 (1%)

Query: 6   AHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR 65
            HQ     + +  L+        NP  ++   LLG  Y   +DY   +    +AL+L   
Sbjct: 17  LHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE 76

Query: 66  FAECYGNMANAWKEKGD---IDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQ 122
            AE Y  +A     +               A+ L  N   A   LAS    +    +A +
Sbjct: 77  NAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIE 136

Query: 123 CCRQALALNPLLVDAHSNLGNLMKAQGLVQEA 154
             ++ + LN   ++    + ++  A+ L + +
Sbjct: 137 LWQKVMDLNSPRINRTQLVESINMAKLLQRRS 168

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 64.5 bits (157), Expect = 5e-12
 Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 3/102 (2%)

Query: 348 YKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAE 407
           +  Q N    +    + +R +P  ++     G  Y      ++++  Y +A+ +R   AE
Sbjct: 20  FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE 79

Query: 408 AHANLASAY---KDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
            +A LA+                   +AL L  +   A   L
Sbjct: 80  LYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLL 121

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 16/76 (21%), Positives = 26/76 (34%)

Query: 375 LVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALL 434
             +  + +         +Q     I   P  +E  A L   Y        ++ +Y+QAL 
Sbjct: 13  QRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQ 72

Query: 435 LRPDFPEATCNLLHTL 450
           LR +  E    L   L
Sbjct: 73  LRGENAELYAALATVL 88

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 89.6 bits (223), Expect = 2e-21
 Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 7/111 (6%)

Query: 64  PRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQC 123
              A    ++ NA  ++ D + A  +Y  AIEL P+    ++N A+ Y  + +  E  Q 
Sbjct: 5   TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQF 64

Query: 124 CRQALALNP-------LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT 167
           C +A+ +         L+  A S  GN  + Q  +  A   +  +L     
Sbjct: 65  CEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 87.0 bits (216), Expect = 2e-20
 Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 27/149 (18%)

Query: 165 QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIM 224
               AIA  +L     +  D  +A  +Y +A++L P+    Y N   VY       E + 
Sbjct: 4   MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQ 63

Query: 225 CYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVG 284
             ++AV+      A                                +A +  GNA +   
Sbjct: 64  FCEKAVEVGRETRA--------------------------DYKLIAKAMSRAGNAFQKQN 97

Query: 285 RVDEAIQCYNQCLSLQPSHPQALTNLGNI 313
            +  A+Q +++ LS     P+ +  +  +
Sbjct: 98  DLSLAVQWFHRSLSEFRD-PELVKKVKEL 125

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 86.2 bits (214), Expect = 4e-20
 Identities = 20/113 (17%), Positives = 45/113 (39%), Gaps = 7/113 (6%)

Query: 131 NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQ 190
                 A  +LGN    Q   ++A+  Y +A+ + P+    ++N A ++ E       +Q
Sbjct: 4   MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQ 63

Query: 191 YYKEAVKLKP-------TFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNA 236
           + ++AV++             A    GN ++       A+  + R++    + 
Sbjct: 64  FCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 85.4 bits (212), Expect = 7e-20
 Identities = 17/105 (16%), Positives = 44/105 (41%), Gaps = 7/105 (6%)

Query: 341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAIT 400
             +L     +Q ++  A   Y++ + +DP       N+   Y E  +  + +Q   +A+ 
Sbjct: 11  EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70

Query: 401 IRP-------TMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 438
           +          +A+A +   +A++    +  A++ + ++L    D
Sbjct: 71  VGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 79.2 bits (196), Expect = 1e-17
 Identities = 21/135 (15%), Positives = 45/135 (33%), Gaps = 27/135 (20%)

Query: 235 NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 294
            AIA  +L +  Y++   + A ++Y +AI  DP  +  YNN      +  +  E +Q   
Sbjct: 7   AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCE 66

Query: 295 QCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNY 354
           + + +                            KA            +     +++Q + 
Sbjct: 67  KAVEVGR----------------ETRADYKLIAKA-----------MSRAGNAFQKQNDL 99

Query: 355 ADAISCYNEVLRIDP 369
           + A+  ++  L    
Sbjct: 100 SLAVQWFHRSLSEFR 114

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 76.2 bits (188), Expect = 1e-16
 Identities = 21/101 (20%), Positives = 43/101 (42%), Gaps = 7/101 (6%)

Query: 39  LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP 98
           LG   Y+  D++      ++A+ L+P     Y N A  + E+      +++   A+E+  
Sbjct: 14  LGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR 73

Query: 99  N-------FADAWSNLASAYMRKGRLNEAAQCCRQALALNP 132
                    A A S   +A+ ++  L+ A Q   ++L+   
Sbjct: 74  ETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR 114

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 63.1 bits (154), Expect = 5e-12
 Identities = 13/75 (17%), Positives = 28/75 (37%)

Query: 368 DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIK 427
              AA    + GN   +      A   Y +AI + P+    + N A+ Y +       ++
Sbjct: 4   MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQ 63

Query: 428 SYKQALLLRPDFPEA 442
             ++A+ +  +    
Sbjct: 64  FCEKAVEVGRETRAD 78

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 60.0 bits (146), Expect = 5e-11
 Identities = 18/100 (18%), Positives = 45/100 (45%), Gaps = 13/100 (13%)

Query: 10  YKSGSYKQALEHSNSVYERNPLRTDNLLLL---GAIYYQLHDYDMCIARNEEALRLEP-- 64
           YK   +++A  H +   E +P    N+       A+Y++   +  C+   E+A+ +    
Sbjct: 19  YKQKDFEKAHVHYDKAIELDP---SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET 75

Query: 65  -----RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPN 99
                  A+      NA++++ D+ LA++++  ++    +
Sbjct: 76  RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 90.2 bits (224), Expect = 3e-21
 Identities = 19/124 (15%), Positives = 39/124 (31%), Gaps = 1/124 (0%)

Query: 125 RQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD 184
           +   A+   ++D   +       +G ++EA   +                LA ++     
Sbjct: 26  KDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQ 85

Query: 185 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLAS 244
             +A   Y  A  L         + G     L  P +A  C++  +Q   +       A 
Sbjct: 86  FQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE-KLKIKAQ 144

Query: 245 TYYE 248
           +Y +
Sbjct: 145 SYLD 148

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 88.7 bits (220), Expect = 8e-21
 Identities = 16/114 (14%), Positives = 32/114 (28%), Gaps = 1/114 (0%)

Query: 192 YKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERG 250
            K+   +     D   +    +   G  +EA + ++        N      LA+ Y  + 
Sbjct: 25  LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKE 84

Query: 251 QADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHP 304
           Q   A   Y  A            + G     +    +A +C+   +       
Sbjct: 85  QFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 87.5 bits (217), Expect = 2e-20
 Identities = 16/108 (14%), Positives = 35/108 (32%)

Query: 93  AIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQ 152
              +  +  D   + A  +  KGR+ EA    R     +   VD    L  + + +   Q
Sbjct: 28  INAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQ 87

Query: 153 EAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKP 200
           +A   Y  A  +         +     +      +A + ++  ++   
Sbjct: 88  QAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 85.2 bits (211), Expect = 1e-19
 Identities = 14/111 (12%), Positives = 28/111 (25%), Gaps = 1/111 (0%)

Query: 158 YLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG 217
             +   I         + A  F   G +  A  +++          D  + L  +Y+   
Sbjct: 25  LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKE 84

Query: 218 MPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDP 267
             Q+A   Y  A      +     +             A   ++  I    
Sbjct: 85  QFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 82.5 bits (204), Expect = 1e-18
 Identities = 16/111 (14%), Positives = 31/111 (27%)

Query: 259 YKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWN 318
            K         ++   +      + GR++EA   +         +   +  L  IY    
Sbjct: 25  LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKE 84

Query: 319 MLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP 369
               AA  Y    A+      P  +      +      A  C+  V++   
Sbjct: 85  QFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 80.6 bits (199), Expect = 6e-18
 Identities = 15/132 (11%), Positives = 37/132 (28%)

Query: 307 LTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLR 366
           +T   +I         + +  K   A+   +     + A  +  +G   +A   +  +  
Sbjct: 5   ITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI 64

Query: 367 IDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAI 426
            D    D ++     Y+   +   A   Y  A  +         +             A 
Sbjct: 65  YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAK 124

Query: 427 KSYKQALLLRPD 438
           + ++  +    D
Sbjct: 125 ECFELVIQHSND 136

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 80.6 bits (199), Expect = 7e-18
 Identities = 18/109 (16%), Positives = 34/109 (31%)

Query: 58  EALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRL 117
           +   +     +   + A  +  KG I+ A  ++           D    LA+ Y  K + 
Sbjct: 27  DINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQF 86

Query: 118 NEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP 166
            +AA     A AL         + G          +A  C+   ++   
Sbjct: 87  QQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 77.5 bits (191), Expect = 7e-17
 Identities = 15/132 (11%), Positives = 42/132 (31%), Gaps = 4/132 (3%)

Query: 205 AYLNLGNVYKALGMPQEAIM---CYQRAVQTRPNAI-AFGNLASTYYERGQADMAILYYK 260
             LN+           +AI      +       + +    + A  +Y +G+ + A ++++
Sbjct: 1   GSLNITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFR 60

Query: 261 QAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNML 320
                D   ++    L    +   +  +A   Y    +L  +    + + G   +     
Sbjct: 61  FLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAP 120

Query: 321 PAAASYYKATLA 332
             A   ++  + 
Sbjct: 121 LKAKECFELVIQ 132

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 76.0 bits (187), Expect = 2e-16
 Identities = 14/129 (10%), Positives = 34/129 (26%), Gaps = 7/129 (5%)

Query: 4   ALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLE 63
           A+   +    + K      + + +        +      +Y     +            +
Sbjct: 14  AVIDAINSGATLKDINAIPDDMMDD-------IYSYAYDFYNKGRIEEAEVFFRFLCIYD 66

Query: 64  PRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQC 123
               +    +A  ++ K     A   Y VA  L  N      +     +R     +A +C
Sbjct: 67  FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKEC 126

Query: 124 CRQALALNP 132
               +  + 
Sbjct: 127 FELVIQHSN 135

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 71.0 bits (174), Expect = 2e-14
 Identities = 15/108 (13%), Positives = 31/108 (28%), Gaps = 2/108 (1%)

Query: 4   ALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLE 63
           + A+  Y  G  ++A      +   +    D ++ L AIY     +         A  L 
Sbjct: 41  SYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100

Query: 64  PRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAY 111
                   +             A   + + I+   +  +     A +Y
Sbjct: 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSND--EKLKIKAQSY 146

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 66.7 bits (163), Expect = 4e-13
 Identities = 13/105 (12%), Positives = 31/105 (29%)

Query: 342 NNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI 401
                I     +  ++ +   ++  I     D + +    +   GR+ +A   +      
Sbjct: 6   TENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY 65

Query: 402 RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
                +    LA+ Y+     + A   Y  A  L  +      + 
Sbjct: 66  DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 8/69 (11%), Positives = 20/69 (28%)

Query: 383 KEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 442
             +    ++         I   M +   + A  + + G +E A   ++   +      + 
Sbjct: 13  TAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDY 72

Query: 443 TCNLLHTLQ 451
              L    Q
Sbjct: 73  IMGLAAIYQ 81

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 86.2 bits (214), Expect = 2e-20
 Identities = 12/89 (13%), Positives = 28/89 (31%), Gaps = 2/89 (2%)

Query: 63  EPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQ 122
           +P        +A    +  +   A+  +   +E  P++   + +L   Y R  R ++A  
Sbjct: 3   DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62

Query: 123 CCRQALALNPLLVDAHS--NLGNLMKAQG 149
              Q + +            L +      
Sbjct: 63  TYAQGIEVAREEGTQKDLSELQDAKLKAE 91

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 86.2 bits (214), Expect = 2e-20
 Identities = 17/84 (20%), Positives = 38/84 (45%), Gaps = 2/84 (2%)

Query: 235 NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 294
           +      LA  + +   A  A+  +++ +  DP ++  Y +LG   + + R D+AI  Y 
Sbjct: 6   DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYA 65

Query: 295 QCLSLQPSHP--QALTNLGNIYME 316
           Q + +       + L+ L +  ++
Sbjct: 66  QGIEVAREEGTQKDLSELQDAKLK 89

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 81.9 bits (203), Expect = 4e-19
 Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 3/97 (3%)

Query: 200 PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILY 258
           P  P     L   +        A+  ++  V+T P+    + +L   Y    + D AI  
Sbjct: 4   PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDT 63

Query: 259 YKQAIGCDPRFLEAY--NNLGNALKDVGRVDEAIQCY 293
           Y Q I            + L +A      ++     +
Sbjct: 64  YAQGIEVAREEGTQKDLSELQDAKLKAEGLEHHHHHH 100

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 81.5 bits (202), Expect = 6e-19
 Identities = 18/98 (18%), Positives = 37/98 (37%), Gaps = 3/98 (3%)

Query: 165 QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIM 224
            P        LA   ++  + +RAL  ++E V+  P +   Y +LG +Y+ L    +AI 
Sbjct: 3   DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62

Query: 225 CYQRAVQTRP---NAIAFGNLASTYYERGQADMAILYY 259
            Y + ++             L     +    +    ++
Sbjct: 63  TYAQGIEVAREEGTQKDLSELQDAKLKAEGLEHHHHHH 100

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 80.4 bits (199), Expect = 2e-18
 Identities = 14/97 (14%), Positives = 33/97 (34%), Gaps = 2/97 (2%)

Query: 98  PNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSC 157
           P        LA  +++    + A     + +  +P  V  + +LG L +      +A   
Sbjct: 4   PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDT 63

Query: 158 YLEALRIQPTF--AIAWSNLAGLFMESGDLNRALQYY 192
           Y + + +          S L    +++  L     ++
Sbjct: 64  YAQGIEVAREEGTQKDLSELQDAKLKAEGLEHHHHHH 100

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 77.3 bits (191), Expect = 2e-17
 Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 2/90 (2%)

Query: 342 NNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI 401
             LA  + +  N + A++ + E++  DP       + G  Y+ + R  DAI  Y + I +
Sbjct: 11  YALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70

Query: 402 RPTMAEAHA--NLASAYKDSGHVEAAIKSY 429
                       L  A   +  +E     +
Sbjct: 71  AREEGTQKDLSELQDAKLKAEGLEHHHHHH 100

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 76.2 bits (188), Expect = 5e-17
 Identities = 10/89 (11%), Positives = 25/89 (28%), Gaps = 2/89 (2%)

Query: 131 NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQ 190
           +P        L            A + + E +   P +   + +L  L+      + A+ 
Sbjct: 3   DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62

Query: 191 YYKEAVKLKPTFPDAY--LNLGNVYKALG 217
            Y + +++            L +      
Sbjct: 63  TYAQGIEVAREEGTQKDLSELQDAKLKAE 91

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 73.5 bits (181), Expect = 5e-16
 Identities = 10/75 (13%), Positives = 24/75 (32%)

Query: 368 DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIK 427
           DP            + +    + A+  +   +   P     + +L   Y+     + AI 
Sbjct: 3   DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62

Query: 428 SYKQALLLRPDFPEA 442
           +Y Q + +  +    
Sbjct: 63  TYAQGIEVAREEGTQ 77

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 71.5 bits (176), Expect = 2e-15
 Identities = 13/91 (14%), Positives = 24/91 (26%), Gaps = 2/91 (2%)

Query: 266 DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAAS 325
           DP        L            A+  + + +   P +     +LG +Y   +    A  
Sbjct: 3   DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62

Query: 326 YYKATLAV--TTGLSAPFNNLAVIYKQQGNY 354
            Y   + V    G     + L     +    
Sbjct: 63  TYAQGIEVAREEGTQKDLSELQDAKLKAEGL 93

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 65.4 bits (160), Expect = 3e-13
 Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 2/84 (2%)

Query: 39  LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP 98
           L   + +  +    +A  EE +  +P +   Y ++   ++     D AI  Y   IE+  
Sbjct: 13  LAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72

Query: 99  NFADA--WSNLASAYMRKGRLNEA 120
                   S L  A ++   L   
Sbjct: 73  EEGTQKDLSELQDAKLKAEGLEHH 96

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 7/49 (14%), Positives = 17/49 (34%)

Query: 403 PTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 451
           P        LA  +    +   A+  +++ +   PD+     +L    +
Sbjct: 4   PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYE 52

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 85.2 bits (211), Expect = 5e-20
 Identities = 15/93 (16%), Positives = 35/93 (37%), Gaps = 4/93 (4%)

Query: 216 LGMPQEAIMCYQRAVQTRPN----AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLE 271
           LG+  +A+  Y++A+ +       A  +  L ST+   G+   A       +   P    
Sbjct: 3   LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62

Query: 272 AYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHP 304
                   L ++GR ++ ++   + ++      
Sbjct: 63  LRVFYAMVLYNLGRYEQGVELLLKIIAETSDDE 95

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 79.4 bits (196), Expect = 7e-18
 Identities = 16/118 (13%), Positives = 33/118 (27%), Gaps = 14/118 (11%)

Query: 81  GDIDLAIRYYLVAIEL---RPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDA 137
           G    A+ YY  AI       + A+ +  L S +   G   +A       +   P     
Sbjct: 4   GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63

Query: 138 HSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEA 195
                 ++   G  ++     L+ +                        +A+ +Y + 
Sbjct: 64  RVFYAMVLYNLGRYEQGVELLLKIIAETSDDE-----------TIQSYKQAILFYADK 110

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 79.0 bits (195), Expect = 9e-18
 Identities = 21/119 (17%), Positives = 38/119 (31%), Gaps = 13/119 (10%)

Query: 148 QGLVQEAYSCYLEALRI---QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD 204
            GL  +A   Y +A+         A  +  L   F   G+  +A       VK  P    
Sbjct: 3   LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62

Query: 205 AYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAI 263
             +    V   LG  ++ +    + +    +           Y++     AIL+Y   +
Sbjct: 63  LRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQ-----SYKQ-----AILFYADKL 111

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 76.3 bits (188), Expect = 7e-17
 Identities = 14/94 (14%), Positives = 29/94 (30%), Gaps = 3/94 (3%)

Query: 351 QGNYADAISCYNEVLRI---DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAE 407
            G  A A+  Y + +         A+  +  G+T++ +G    A       +   P    
Sbjct: 3   LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62

Query: 408 AHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE 441
                A    + G  E  ++   + +    D   
Sbjct: 63  LRVFYAMVLYNLGRYEQGVELLLKIIAETSDDET 96

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 75.5 bits (186), Expect = 2e-16
 Identities = 21/119 (17%), Positives = 36/119 (30%), Gaps = 14/119 (11%)

Query: 250 GQADMAILYYKQAI---GCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQA 306
           G    A+ YY++AI          E Y  LG+  + +G   +A       +   P+H   
Sbjct: 4   GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63

Query: 307 LTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVL 365
                 +                 +A T+             +   +Y  AI  Y + L
Sbjct: 64  RVFYAMVLYNLGRYEQGVELLLKIIAETSD-----------DETIQSYKQAILFYADKL 111

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 69.0 bits (169), Expect = 3e-14
 Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 3/79 (3%)

Query: 57  EEALRL---EPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMR 113
           E+A+         AECY  + + ++  G+   A       ++  PN        A     
Sbjct: 14  EKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYN 73

Query: 114 KGRLNEAAQCCRQALALNP 132
            GR  +  +   + +A   
Sbjct: 74  LGRYEQGVELLLKIIAETS 92

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 67.4 bits (165), Expect = 1e-13
 Identities = 18/150 (12%), Positives = 37/150 (24%), Gaps = 42/150 (28%)

Query: 284 GRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNN 343
           G   +A+  Y + ++                             +            +  
Sbjct: 4   GLEAQAVPYYEKAIASGLQGK--------------------DLAEC-----------YLG 32

Query: 344 LAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRP 403
           L   ++  G Y  A +     ++  P      V        +GR    ++  ++ I    
Sbjct: 33  LGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETS 92

Query: 404 TMAEAHANLASAYKDSGHVEAAIKSYKQAL 433
                   + S Y      + AI  Y   L
Sbjct: 93  ----DDETIQS-Y------KQAILFYADKL 111

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 57.4 bits (139), Expect = 3e-10
 Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 3/64 (4%)

Query: 386 GRVTDAIQDYIRAITI---RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 442
           G    A+  Y +AI        +AE +  L S ++  G    A       +   P+    
Sbjct: 4   GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63

Query: 443 TCNL 446
               
Sbjct: 64  RVFY 67

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 53.6 bits (129), Expect = 8e-09
 Identities = 13/86 (15%), Positives = 25/86 (29%), Gaps = 4/86 (4%)

Query: 14 SYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNM 73
           Y++A+              +  L LG+ +  L +Y    A     ++  P         
Sbjct: 12 YYEKAIASGLQ----GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFY 67

Query: 74 ANAWKEKGDIDLAIRYYLVAIELRPN 99
          A      G  +  +   L  I    +
Sbjct: 68 AMVLYNLGRYEQGVELLLKIIAETSD 93

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 88.2 bits (218), Expect = 1e-18
 Identities = 28/173 (16%), Positives = 46/173 (26%), Gaps = 24/173 (13%)

Query: 153 EAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNV 212
              + + +A                   +   LNRA +   E V+  P F  A      V
Sbjct: 195 ALLTNFYQAHDYLLHG------------DDKSLNRASELLGEIVQSSPEFTYARAEKALV 242

Query: 213 YKALGMPQ--------EAIMCYQRAVQTRPN---AIAFGNLASTYYERGQADMAILYYKQ 261
                                    V        +I +   A +   +G+ D +      
Sbjct: 243 DIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINT 302

Query: 262 AIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIY 314
            I  +  +L  Y  LG   +  G   EA   Y    +L+P           I+
Sbjct: 303 GIDLEMSWL-NYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIF 354

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 78.6 bits (193), Expect = 1e-15
 Identities = 25/194 (12%), Positives = 46/194 (23%), Gaps = 15/194 (7%)

Query: 99  NFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNL--GNLMKAQGLVQ---E 153
           N     ++L  +  +        +       + P      +N    +     G  +    
Sbjct: 158 NQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNR 217

Query: 154 AYSCYLEALRIQPTFAIAWSNLAGLF--------MESGDLNRALQYYKEAVKLK--PTFP 203
           A     E ++  P F  A +  A +         ++   L          V L       
Sbjct: 218 ASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLS 277

Query: 204 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAI 263
             Y          G   E+       +    + + +  L   Y  +G    A   Y  A 
Sbjct: 278 IIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAF 337

Query: 264 GCDPRFLEAYNNLG 277
              P     Y    
Sbjct: 338 NLRPGANTLYWIEN 351

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 77.8 bits (191), Expect = 2e-15
 Identities = 26/208 (12%), Positives = 58/208 (27%), Gaps = 18/208 (8%)

Query: 241 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALK-----DVGRVDEAIQCYNQ 295
           +L  +  +           +      P       N   A       D   ++ A +   +
Sbjct: 165 DLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGE 224

Query: 296 CLSLQPSHPQALTNLGNIYMEWNM--------LPAAASYYKATLAVTTGLSAPF--NNLA 345
            +   P    A      + +  +         L A  +     + +    +        A
Sbjct: 225 IVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKA 284

Query: 346 VIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM 405
           V    +G   ++    N  + ++  +    V  G  Y+  G   +A   Y+ A  +RP  
Sbjct: 285 VSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343

Query: 406 AEAHANLASAYKDSGHVEAAIKSYKQAL 433
              +      ++ S  V   +    + L
Sbjct: 344 NTLYWIENGIFQTS--VPYVVPYLDKFL 369

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 69.4 bits (169), Expect = 1e-12
 Identities = 27/145 (18%), Positives = 42/145 (28%), Gaps = 14/145 (9%)

Query: 1   MHMALAHQMYKSG---SYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNE 57
            +   AH     G   S  +A E    + + +P  T        +    H       +  
Sbjct: 198 TNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQL 257

Query: 58  E----------ALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNL 107
                       L      +  Y   A +   KG  D + +     I+L  ++   +  L
Sbjct: 258 AALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWL-NYVLL 316

Query: 108 ASAYMRKGRLNEAAQCCRQALALNP 132
              Y  KG   EAA     A  L P
Sbjct: 317 GKVYEMKGMNREAADAYLTAFNLRP 341

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 46.2 bits (109), Expect = 3e-05
 Identities = 14/113 (12%), Positives = 30/113 (26%), Gaps = 3/113 (2%)

Query: 1   MHMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLL--LLGAIYYQLHDYDMCIARNEE 58
             +  +                +++     L   +++  +           D        
Sbjct: 243 DIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINT 302

Query: 59  ALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAY 111
            + LE  +   Y  +   ++ KG    A   YL A  LRP     +      +
Sbjct: 303 GIDLEMSWLN-YVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIF 354

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 81.9 bits (203), Expect = 1e-18
 Identities = 29/110 (26%), Positives = 50/110 (45%)

Query: 126 QALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDL 185
               +NP L     N GN    +G   +A   Y EA++  P  A  +SN A  + +  + 
Sbjct: 7   HHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEF 66

Query: 186 NRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
             AL+  +E ++L+PTF   Y       +A+    +A+  YQ+A+    +
Sbjct: 67  QLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS 116

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 80.7 bits (200), Expect = 4e-18
 Identities = 27/127 (21%), Positives = 52/127 (40%), Gaps = 1/127 (0%)

Query: 190 QYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYE 248
            ++     + P       N GN     G   +A+  Y  A++  P +A  + N A+ Y +
Sbjct: 3   HHHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK 62

Query: 249 RGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALT 308
             +  +A+   ++ I  +P F++ Y     AL+ +    +A+  Y + L L  S  +A  
Sbjct: 63  LLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAAD 122

Query: 309 NLGNIYM 315
                 M
Sbjct: 123 GYQRCMM 129

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 79.2 bits (196), Expect = 1e-17
 Identities = 27/119 (22%), Positives = 48/119 (40%)

Query: 57  EEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGR 116
                + P  A    N  N   +KGD   A+++Y  AI+  P  A  +SN A+ Y +   
Sbjct: 6   HHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLE 65

Query: 117 LNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNL 175
              A + C + + L P  +  ++     ++A     +A   Y +AL +  +   A    
Sbjct: 66  FQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGY 124

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 78.0 bits (193), Expect = 3e-17
 Identities = 30/129 (23%), Positives = 52/129 (40%)

Query: 20  EHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKE 79
            H +     NP     +   G   +Q  DY   +    EA++  P+ A+ Y N A  + +
Sbjct: 3   HHHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK 62

Query: 80  KGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHS 139
             +  LA++     I+L P F   ++  A+A        +A    ++AL L+    +A  
Sbjct: 63  LLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAAD 122

Query: 140 NLGNLMKAQ 148
                M AQ
Sbjct: 123 GYQRCMMAQ 131

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 77.7 bits (192), Expect = 4e-17
 Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 7/107 (6%)

Query: 343 NLAVIYKQQGN-------YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDY 395
           +LA++ K +GN       Y  A+  Y E ++ +P  A    NR   Y ++     A++D 
Sbjct: 14  DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDC 73

Query: 396 IRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 442
              I + PT  + +   A+A +       A+  Y++AL L     EA
Sbjct: 74  EECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEA 120

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 71.9 bits (177), Expect = 4e-15
 Identities = 23/160 (14%), Positives = 47/160 (29%), Gaps = 34/160 (21%)

Query: 258 YYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEW 317
           ++      +P       N GN     G   +A++ Y + +   P   +  +N        
Sbjct: 4   HHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNR------- 56

Query: 318 NMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVN 377
                AA Y K                         +  A+    E ++++P    G   
Sbjct: 57  -----AACYTK----------------------LLEFQLALKDCEECIQLEPTFIKGYTR 89

Query: 378 RGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYK 417
           +    + +   T A+  Y +A+ +  +  EA         
Sbjct: 90  KAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM 129

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 59.2 bits (144), Expect = 1e-10
 Identities = 22/145 (15%), Positives = 50/145 (34%), Gaps = 35/145 (24%)

Query: 226 YQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVG 284
           +       P+ A+   N  +  +++G    A+ +Y +AI  +P+  + Y+N       + 
Sbjct: 5   HHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLL 64

Query: 285 RVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNL 344
               A++   +C+ L+P                       ++ K            +   
Sbjct: 65  EFQLALKDCEECIQLEP-----------------------TFIKG-----------YTRK 90

Query: 345 AVIYKQQGNYADAISCYNEVLRIDP 369
           A   +   +Y  A+  Y + L +D 
Sbjct: 91  AAALEAMKDYTKAMDVYQKALDLDS 115

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 55.7 bits (135), Expect = 2e-09
 Identities = 20/82 (24%), Positives = 39/82 (47%)

Query: 361 YNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 420
           ++    ++P  A  + N+GN   + G    A++ Y  AI   P  A+ ++N A+ Y    
Sbjct: 5   HHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLL 64

Query: 421 HVEAAIKSYKQALLLRPDFPEA 442
             + A+K  ++ + L P F + 
Sbjct: 65  EFQLALKDCEECIQLEPTFIKG 86

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 82.0 bits (203), Expect = 1e-18
 Identities = 31/129 (24%), Positives = 49/129 (37%), Gaps = 17/129 (13%)

Query: 193 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQ 251
           K+A+K K         LGN          A+  Y +A +  P N     N A+ Y+E+G 
Sbjct: 2   KQALKEK--------ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGD 53

Query: 252 ADMAILYYKQAIGCDPRFLE-------AYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHP 304
            +      ++AI       E       AY  +GN+     +  +AI  YN+ L+   + P
Sbjct: 54  YNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-P 112

Query: 305 QALTNLGNI 313
             L      
Sbjct: 113 DVLKKCQQA 121

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 80.8 bits (200), Expect = 3e-18
 Identities = 29/150 (19%), Positives = 51/150 (34%), Gaps = 28/150 (18%)

Query: 67  AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQ 126
           A     + N   +K D D A+++Y  A EL P      +N A+ Y  KG  N+  + C +
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63

Query: 127 ALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLN 186
           A+ +                             E        A A++ +   + +     
Sbjct: 64  AIEVGR---------------------------ENREDYRQIAKAYARIGNSYFKEEKYK 96

Query: 187 RALQYYKEAVKLKPTFPDAYLNLGNVYKAL 216
            A+ +Y +++    T PD         K L
Sbjct: 97  DAIHFYNKSLAEHRT-PDVLKKCQQAEKIL 125

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 77.7 bits (192), Expect = 4e-17
 Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 7/114 (6%)

Query: 136 DAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEA 195
                LGN    +     A   Y +A  + PT     +N A ++ E GD N+  +  ++A
Sbjct: 5   LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKA 64

Query: 196 VKLKPTFPD-------AYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNL 242
           +++     +       AY  +GN Y      ++AI  Y +++            
Sbjct: 65  IEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKC 118

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 75.4 bits (186), Expect = 3e-16
 Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 14/108 (12%)

Query: 345 AVIYKQQGN-------YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIR 397
           A+  K+ GN       +  A+  Y++   +DP     + N+   Y E G      +   +
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63

Query: 398 AITIRP-------TMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 438
           AI +          +A+A+A + ++Y      + AI  Y ++L     
Sbjct: 64  AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 72.3 bits (178), Expect = 2e-15
 Identities = 25/154 (16%), Positives = 45/154 (29%), Gaps = 42/154 (27%)

Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 330
                LGN        D A++ Y++   L P++   +TN   +Y E              
Sbjct: 5   LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE-------------- 50

Query: 331 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP-------LAADGLVNRGNTYK 383
                               +G+Y        + + +           A      GN+Y 
Sbjct: 51  --------------------KGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYF 90

Query: 384 EIGRVTDAIQDYIRAITIRPTMAEAHANLASAYK 417
           +  +  DAI  Y +++    T  +       A K
Sbjct: 91  KEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEK 123

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 71.2 bits (175), Expect = 6e-15
 Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 7/101 (6%)

Query: 39  LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP 98
           LG   Y+  D+D  +   ++A  L+P       N A  + EKGD +        AIE+  
Sbjct: 10  LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69

Query: 99  N-------FADAWSNLASAYMRKGRLNEAAQCCRQALALNP 132
                    A A++ + ++Y ++ +  +A     ++LA + 
Sbjct: 70  ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 67.7 bits (166), Expect = 1e-13
 Identities = 21/135 (15%), Positives = 43/135 (31%), Gaps = 27/135 (20%)

Query: 235 NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 294
            A+    L +  Y++   D A+ +Y +A   DP  +    N      + G  ++  +   
Sbjct: 3   QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCE 62

Query: 295 QCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNY 354
           + + +   + +                      KA           +  +   Y ++  Y
Sbjct: 63  KAIEVGRENREDYRQ----------------IAKA-----------YARIGNSYFKEEKY 95

Query: 355 ADAISCYNEVLRIDP 369
            DAI  YN+ L    
Sbjct: 96  KDAIHFYNKSLAEHR 110

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 57.7 bits (140), Expect = 3e-10
 Identities = 21/100 (21%), Positives = 44/100 (44%), Gaps = 13/100 (13%)

Query: 10  YKSGSYKQALEHSNSVYERNPLRTDNLLLL---GAIYYQLHDYDMCIARNEEALRLEP-- 64
           YK   +  AL+H +   E +P    N+  +    A+Y++  DY+ C    E+A+ +    
Sbjct: 15  YKKKDFDTALKHYDKAKELDP---TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN 71

Query: 65  -----RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPN 99
                + A+ Y  + N++ ++     AI +Y  ++     
Sbjct: 72  REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 14/71 (19%), Positives = 27/71 (38%)

Query: 372 ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 431
           A      GN   +      A++ Y +A  + PT      N A+ Y + G      +  ++
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63

Query: 432 ALLLRPDFPEA 442
           A+ +  +  E 
Sbjct: 64  AIEVGRENRED 74

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 82.5 bits (204), Expect = 2e-18
 Identities = 25/100 (25%), Positives = 42/100 (42%)

Query: 136 DAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEA 195
           D   + GN   A+    +A   Y +AL I P   I  SN A  +  SG   +A +  + A
Sbjct: 12  DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELA 71

Query: 196 VKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
             + P +  A+  LG     +   + A   Y++ ++   N
Sbjct: 72  TVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGN 111

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 80.9 bits (200), Expect = 7e-18
 Identities = 30/154 (19%), Positives = 52/154 (33%), Gaps = 9/154 (5%)

Query: 67  AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQ 126
           ++   +  NA   + +   AI  Y  A+ + P      SN A+AY   G+  +AA+    
Sbjct: 11  SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70

Query: 127 ALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLN 186
           A  ++P    A S LG         + A   Y + +  +                   L 
Sbjct: 71  ATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG--------LE 122

Query: 187 RALQYYKEAVKLKPTFPDAYLNLGNVYKALG-MP 219
              +  +EA +      D   +     +  G MP
Sbjct: 123 TTKRKIEEANRGAEPPADDVDDAAGASRGAGGMP 156

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 78.2 bits (193), Expect = 6e-17
 Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 7/108 (6%)

Query: 345 AVIYKQQGN-------YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIR 397
           +   K +GN       Y+ AI  Y + L I P     L NR   Y   G+   A +D   
Sbjct: 11  SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70

Query: 398 AITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCN 445
           A  + P  ++A + L  A  D    + A ++Y++ +    +       
Sbjct: 71  ATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMK 118

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 75.2 bits (185), Expect = 6e-16
 Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 1/104 (0%)

Query: 204 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQA 262
           D   + GN   A     +AI  Y +A+   P N I   N A+ Y   GQ + A    + A
Sbjct: 12  DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELA 71

Query: 263 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQA 306
              DP++ +A++ LG A  D+     A + Y + +  + +    
Sbjct: 72  TVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSD 115

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 71.7 bits (176), Expect = 1e-14
 Identities = 22/112 (19%), Positives = 37/112 (33%), Gaps = 1/112 (0%)

Query: 43  YYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFAD 102
                +Y   I    +AL + P       N A A+   G  + A     +A  + P ++ 
Sbjct: 21  AMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSK 80

Query: 103 AWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEA 154
           AWS L  A         A +   + +             G L   +  ++EA
Sbjct: 81  AWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG-LETTKRKIEEA 131

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 63.2 bits (154), Expect = 1e-11
 Identities = 24/141 (17%), Positives = 39/141 (27%), Gaps = 34/141 (24%)

Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 330
           +   + GNA        +AI  Y Q LS+ P++P  L+N             AA+Y    
Sbjct: 12  DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNR------------AAAYSA-- 57

Query: 331 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 390
                                G +  A         +DP  +      G    ++     
Sbjct: 58  --------------------SGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKG 97

Query: 391 AIQDYIRAITIRPTMAEAHAN 411
           A + Y + I            
Sbjct: 98  AKEAYEKGIEAEGNGGSDAMK 118

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 60.9 bits (148), Expect = 6e-11
 Identities = 26/188 (13%), Positives = 52/188 (27%), Gaps = 39/188 (20%)

Query: 228 RAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVD 287
           R++   P +    +  +    R +   AI  Y QA+   P      +N   A    G+ +
Sbjct: 3   RSMAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHE 62

Query: 288 EAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVI 347
           +A +       + P                        Y KA           ++ L + 
Sbjct: 63  KAAEDAELATVVDP-----------------------KYSKA-----------WSRLGLA 88

Query: 348 YKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAE 407
                +Y  A   Y + +  +       + RG     +      I++  R         +
Sbjct: 89  RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG-----LETTKRKIEEANRGAEPPADDVD 143

Query: 408 AHANLASA 415
             A  +  
Sbjct: 144 DAAGASRG 151

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 53.2 bits (128), Expect = 3e-08
 Identities = 19/116 (16%), Positives = 39/116 (33%), Gaps = 7/116 (6%)

Query: 10  YKSGSYKQALEHSNSVYERNPLRTDNLLLL---GAIYYQLHDYDMCIARNEEALRLEPRF 66
                Y +A++         P    N + L    A Y     ++      E A  ++P++
Sbjct: 22  MARKEYSKAIDLYTQALSIAP---ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY 78

Query: 67  AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQ 122
           ++ +  +  A  +  D   A   Y   IE   N             ++ ++ EA +
Sbjct: 79  SKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKR-KIEEANR 133

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 51.7 bits (124), Expect = 1e-07
 Identities = 21/76 (27%), Positives = 35/76 (46%)

Query: 367 IDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAI 426
                +D L + GN        + AI  Y +A++I P      +N A+AY  SG  E A 
Sbjct: 6   APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAA 65

Query: 427 KSYKQALLLRPDFPEA 442
           +  + A ++ P + +A
Sbjct: 66  EDAELATVVDPKYSKA 81

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 81.2 bits (200), Expect = 7e-17
 Identities = 34/257 (13%), Positives = 77/257 (29%), Gaps = 56/257 (21%)

Query: 67  AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQ 126
           A+     A  ++ + +++LA   +L A +                 + G  +EA      
Sbjct: 37  ADLCVQAATIYRLRKELNLAGDSFLKAADY--------------QKKAGNEDEAGNT--- 79

Query: 127 ALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF------AIAWSNLAGLF- 179
                      +       K+ G    A      A++I          A     L  +  
Sbjct: 80  -----------YVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILE 128

Query: 180 MESGDLNRALQYYKEAVKL------KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ-- 231
            +  D  +A+  Y+ A +              ++   ++    G   EA   Y + ++  
Sbjct: 129 NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS 188

Query: 232 -----TRPNAIA-FGNLASTYYERGQADMAILYYKQAIGCDPRFLEAY-----NNLGNAL 280
                ++ +    F            A  A    ++    DP F ++       +L +A+
Sbjct: 189 MGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAV 248

Query: 281 K--DVGRVDEAIQCYNQ 295
              D  ++ E  + ++ 
Sbjct: 249 NEGDSEQLSEHCKEFDN 265

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 78.9 bits (194), Expect = 4e-16
 Identities = 34/255 (13%), Positives = 63/255 (24%), Gaps = 54/255 (21%)

Query: 204 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAI 263
           D  +    +Y+       A   + +A             A    + G  D A        
Sbjct: 38  DLCVQAATIYRLRKELNLAGDSFLKA-------------ADYQKKAGNEDEAG------- 77

Query: 264 GCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQ------ALTNLGNIY-ME 316
                    Y       K  G    A+      + +     Q          LG I   +
Sbjct: 78  -------NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEND 130

Query: 317 WNMLPAAASYYKATLAVTTGLSAP------FNNLAVIYKQQGNYADAISCYNEVLRID-- 368
            +    A   Y+          +       F   A +    G Y +A   Y+++++    
Sbjct: 131 LHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG 190

Query: 369 -----PLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAH-----ANLASAYK- 417
                    D  + +G           A +      +  P  A++       +L  A   
Sbjct: 191 NRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNE 250

Query: 418 -DSGHVEAAIKSYKQ 431
            DS  +    K +  
Sbjct: 251 GDSEQLSEHCKEFDN 265

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 61.6 bits (149), Expect = 3e-10
 Identities = 29/193 (15%), Positives = 53/193 (27%), Gaps = 26/193 (13%)

Query: 39  LGAIYYQLHDYDMCIARNEEALRL------EPRFAECYGNMANAWKEKGDIDLAIRYYLV 92
              IY    + ++      +A         E      Y      +K  G+   A+     
Sbjct: 43  AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLEN 102

Query: 93  AIELRPNF------ADAWSNLASAY-MRKGRLNEAAQCCRQALAL------NPLLVDAHS 139
           AI++  +       A+    L            +A  C   A           L      
Sbjct: 103 AIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFI 162

Query: 140 NLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLF-------MESGDLNRALQYY 192
              +L    G   EA   Y + ++      ++  +L   F       + + D   A +  
Sbjct: 163 KCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTL 222

Query: 193 KEAVKLKPTFPDA 205
           +E     P F D+
Sbjct: 223 QEGQSEDPNFADS 235

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 75.3 bits (186), Expect = 2e-16
 Identities = 29/110 (26%), Positives = 45/110 (40%)

Query: 126 QALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDL 185
           +   +NP L     N GN    +G    A   Y EA++  P  AI +SN A    +  + 
Sbjct: 4   RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEF 63

Query: 186 NRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
            RAL      ++L   F   Y+       A+    +A   Y+ A+Q  P+
Sbjct: 64  QRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPS 113

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 71.9 bits (177), Expect = 3e-15
 Identities = 26/111 (23%), Positives = 42/111 (37%), Gaps = 7/111 (6%)

Query: 343 NLAVIYKQQGN-------YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDY 395
            LA   K +GN       Y  A+  YNE ++ DP  A    NR     ++     A+ D 
Sbjct: 11  ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDC 70

Query: 396 IRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
              I +     + +   A+          A ++Y+ AL + P   EA   +
Sbjct: 71  DTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGV 121

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 71.1 bits (175), Expect = 7e-15
 Identities = 26/112 (23%), Positives = 47/112 (41%)

Query: 56  NEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKG 115
           N     + P  A+   N  N + +KGD   A+R+Y  A++  P  A  +SN A+   +  
Sbjct: 2   NARLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLM 61

Query: 116 RLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT 167
               A   C   + L+   +  +      + A     +A   Y +AL++ P+
Sbjct: 62  EFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPS 113

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 70.3 bits (173), Expect = 1e-14
 Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 9/119 (7%)

Query: 193 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQ 251
           + A + K        N GN Y   G    A+  Y  AV+  P NAI + N A+   +  +
Sbjct: 11  ELAQEEK--------NKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLME 62

Query: 252 ADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNL 310
              A+      I  D +F++ Y      L  +    +A + Y   L + PS+ +A   +
Sbjct: 63  FQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGV 121

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 66.5 bits (163), Expect = 3e-13
 Identities = 24/120 (20%), Positives = 45/120 (37%)

Query: 27  ERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLA 86
             NP         G  Y++  DY   +    EA++ +P  A  Y N A    +  +   A
Sbjct: 7   YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRA 66

Query: 87  IRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMK 146
           +      I L   F   +   A+  +     ++A +    AL ++P   +A   + N ++
Sbjct: 67  LDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCLR 126

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 61.5 bits (150), Expect = 1e-11
 Identities = 23/152 (15%), Positives = 48/152 (31%), Gaps = 34/152 (22%)

Query: 266 DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAAS 325
           +P   +   N GN     G    A++ YN+ +   P +                    A 
Sbjct: 9   NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN--------------------AI 48

Query: 326 YYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEI 385
            Y              +N A    +   +  A+   +  +R+D     G + +      +
Sbjct: 49  LY--------------SNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM 94

Query: 386 GRVTDAIQDYIRAITIRPTMAEAHANLASAYK 417
              + A + Y  A+ + P+  EA   + +  +
Sbjct: 95  REWSKAQRAYEDALQVDPSNEEAREGVRNCLR 126

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 49.5 bits (119), Expect = 2e-07
 Identities = 22/130 (16%), Positives = 41/130 (31%), Gaps = 37/130 (28%)

Query: 240 GNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 299
           GN    Y+++G    A+ +Y +A+  DP     Y+N    L  +     A+   + C+ L
Sbjct: 20  GN---EYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL 76

Query: 300 QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAIS 359
                                     + K            +   A        ++ A  
Sbjct: 77  DS-----------------------KFIKG-----------YIRKAACLVAMREWSKAQR 102

Query: 360 CYNEVLRIDP 369
            Y + L++DP
Sbjct: 103 AYEDALQVDP 112

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 49.1 bits (118), Expect = 3e-07
 Identities = 18/80 (22%), Positives = 32/80 (40%)

Query: 363 EVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHV 422
            +  I+P  A    N+GN Y + G    A++ Y  A+   P  A  ++N A+        
Sbjct: 4   RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEF 63

Query: 423 EAAIKSYKQALLLRPDFPEA 442
           + A+      + L   F + 
Sbjct: 64  QRALDDCDTCIRLDSKFIKG 83

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 74.3 bits (183), Expect = 2e-16
 Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 3/81 (3%)

Query: 241 NLASTYYERGQADMAILYYKQAIGCDPR-FLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 299
                   +G  + A+   ++ +  +P    EAY  +GNA + +G   +A+  Y   + L
Sbjct: 5   KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64

Query: 300 QPSHP--QALTNLGNIYMEWN 318
            P  P  QA   + +I   +N
Sbjct: 65  NPDSPALQARKMVMDILNFYN 85

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 68.2 bits (167), Expect = 4e-14
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 1/70 (1%)

Query: 343 NLAVIYKQQGNYADAISCYNEVLRIDPLAADGL-VNRGNTYKEIGRVTDAIQDYIRAITI 401
                   QG+  +A+    E L+ +P+  D      GN Y+++G    A+ +Y  AI +
Sbjct: 5   KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64

Query: 402 RPTMAEAHAN 411
            P      A 
Sbjct: 65  NPDSPALQAR 74

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 67.4 bits (165), Expect = 6e-14
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 377 NRGNTYKEIGRVTDAIQDYIRAITIRPT-MAEAHANLASAYKDSGHVEAAIKSYKQALLL 435
                    G + +A+Q     +   P    EA+  + +AY+  G  + A+ +Y+ A+ L
Sbjct: 5   KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64

Query: 436 RPDFPEA 442
            PD P  
Sbjct: 65  NPDSPAL 71

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 66.6 bits (163), Expect = 1e-13
 Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 17/106 (16%)

Query: 174 NLAGLFMESGDLNRALQYYKEAVKLKPTFPD-AYLNLGNVYKALGMPQEAIMCYQRAVQT 232
                 +  GD+  ALQ  +E ++ +P   D AY  +GN Y+ LG  Q+A+  YQ A++ 
Sbjct: 5   KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64

Query: 233 RPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGN 278
            P++ A          R      + +Y +           YN L +
Sbjct: 65  NPDSPA-------LQARKMVMDILNFYNKD---------MYNQLEH 94

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 65.8 bits (161), Expect = 2e-13
 Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 3/79 (3%)

Query: 72  NMANAWKEKGDIDLAIRYYLVAIELRPNFAD-AWSNLASAYMRKGRLNEAAQCCRQALAL 130
                   +GDI+ A++     ++  P   D A+  + +AY + G   +A    + A+ L
Sbjct: 5   KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64

Query: 131 NP--LLVDAHSNLGNLMKA 147
           NP    + A   + +++  
Sbjct: 65  NPDSPALQARKMVMDILNF 83

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 61.6 bits (150), Expect = 6e-12
 Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 9/91 (9%)

Query: 106 NLASAYMRKGRLNEAAQCCRQALALNPLLVD-AHSNLGNLMKAQGLVQEAYSCYLEALRI 164
                 + +G +  A Q   + L   P+  D A+  +GN  +  G  Q+A + Y  A+ +
Sbjct: 5   KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64

Query: 165 QPTFAIAWSNLAGLFMESGDLNRALQYYKEA 195
            P      +           +   L +Y + 
Sbjct: 65  NPDSPALQAR--------KMVMDILNFYNKD 87

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 61.6 bits (150), Expect = 7e-12
 Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 9/91 (9%)

Query: 140 NLGNLMKAQGLVQEAYSCYLEALRIQPT-FAIAWSNLAGLFMESGDLNRALQYYKEAVKL 198
                +  QG ++ A     E L+ +P     A+  +   + + GD  +AL  Y+ A++L
Sbjct: 5   KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64

Query: 199 KPTFPDAYLNLGNVYKALGMPQEAIMCYQRA 229
            P  P           A  M  + +  Y + 
Sbjct: 65  NPDSPALQ--------ARKMVMDILNFYNKD 87

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 58.9 bits (143), Expect = 6e-11
 Identities = 13/95 (13%), Positives = 30/95 (31%), Gaps = 33/95 (34%)

Query: 275 NLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT 334
                L + G ++ A+Q   + L  +P                       +YY       
Sbjct: 5   KTIKELINQGDIENALQALEEFLQTEPVG------------------KDEAYY------- 39

Query: 335 TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP 369
                    +   Y++ G++  A++ Y   + ++P
Sbjct: 40  --------LMGNAYRKLGDWQKALNNYQSAIELNP 66

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 55.1 bits (133), Expect = 1e-09
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 1/73 (1%)

Query: 35  NLLLLGAIYYQLHDYDMCIARNEEALRLEPR-FAECYGNMANAWKEKGDIDLAIRYYLVA 93
           + L          D +  +   EE L+ EP    E Y  M NA+++ GD   A+  Y  A
Sbjct: 2   DQLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSA 61

Query: 94  IELRPNFADAWSN 106
           IEL P+     + 
Sbjct: 62  IELNPDSPALQAR 74

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 74.5 bits (184), Expect = 3e-16
 Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 7/111 (6%)

Query: 73  MANAWKEKG-------DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCR 125
             N  KEKG       +ID A++ Y  AI+L P+    +SN ++AY +KG   +A +   
Sbjct: 3   QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGC 62

Query: 126 QALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLA 176
           + + L P     +S     ++     +EA   Y E L+ +         L 
Sbjct: 63  KTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 113

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 73.4 bits (181), Expect = 8e-16
 Identities = 25/101 (24%), Positives = 46/101 (45%)

Query: 135 VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKE 194
           V+     GN   + G + +A  CY EA+++ P   + +SN +  + + GD  +A +   +
Sbjct: 4   VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 63

Query: 195 AVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
            V LKP +   Y       + L   +EA   Y+  ++   N
Sbjct: 64  TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN 104

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 73.4 bits (181), Expect = 9e-16
 Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 9/119 (7%)

Query: 193 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQ 251
           ++  +LK          GN   ++G   +A+ CY  A++  P N + + N ++ Y ++G 
Sbjct: 2   EQVNELK--------EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGD 53

Query: 252 ADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNL 310
              A     + +   P + + Y+    AL+ + R +EA + Y + L  + ++PQ    L
Sbjct: 54  YQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGL 112

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 70.3 bits (173), Expect = 9e-15
 Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 7/109 (6%)

Query: 345 AVIYKQQGN-------YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIR 397
               K++GN         DA+ CY+E +++DP       NR   Y + G    A +D  +
Sbjct: 4   VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 63

Query: 398 AITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
            + ++P   + ++  A+A +     E A ++Y++ L    + P+    L
Sbjct: 64  TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGL 112

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 65.7 bits (161), Expect = 4e-13
 Identities = 23/104 (22%), Positives = 42/104 (40%)

Query: 43  YYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFAD 102
              + + D  +    EA++L+P     Y N + A+ +KGD   A       ++L+P++  
Sbjct: 14  ALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGK 73

Query: 103 AWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMK 146
            +S  A+A     R  EA +   + L            L N+  
Sbjct: 74  GYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 59.5 bits (145), Expect = 7e-11
 Identities = 24/145 (16%), Positives = 46/145 (31%), Gaps = 34/145 (23%)

Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 330
                 GN    VG +D+A+QCY++ + L P       N                 Y   
Sbjct: 5   NELKEKGNKALSVGNIDDALQCYSEAIKLDP------HN--------------HVLY--- 41

Query: 331 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 390
                      +N +  Y ++G+Y  A     + + + P    G   +    + + R  +
Sbjct: 42  -----------SNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE 90

Query: 391 AIQDYIRAITIRPTMAEAHANLASA 415
           A + Y   +       +    L + 
Sbjct: 91  AKRTYEEGLKHEANNPQLKEGLQNM 115

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 49.5 bits (119), Expect = 2e-07
 Identities = 23/130 (17%), Positives = 39/130 (30%), Gaps = 37/130 (28%)

Query: 240 GNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 299
           GN        G  D A+  Y +AI  DP     Y+N   A    G   +A +   + + L
Sbjct: 11  GN---KALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL 67

Query: 300 QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAIS 359
           +P                        + K            ++  A   +    + +A  
Sbjct: 68  KP-----------------------DWGKG-----------YSRKAAALEFLNRFEEAKR 93

Query: 360 CYNEVLRIDP 369
            Y E L+ + 
Sbjct: 94  TYEEGLKHEA 103

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 21/112 (18%), Positives = 35/112 (31%), Gaps = 18/112 (16%)

Query: 8   QMYKSGSYKQALEH---------SNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEE 58
           +    G+   AL+           N V   N  R        A Y +  DY        +
Sbjct: 13  KALSVGNIDDALQCYSEAIKLDPHNHVLYSN--R-------SAAYAKKGDYQKAYEDGCK 63

Query: 59  ALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASA 110
            + L+P + + Y   A A +     + A R Y   ++   N       L + 
Sbjct: 64  TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 73.8 bits (182), Expect = 7e-16
 Identities = 21/109 (19%), Positives = 41/109 (37%), Gaps = 7/109 (6%)

Query: 345 AVIYKQQGN-------YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIR 397
           A   + +G        + +A+  Y E+++  P  A G  NR     ++    +AI D  +
Sbjct: 4   AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63

Query: 398 AITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
           AI   P    A+   A+A        +A+++   A     +    +   
Sbjct: 64  AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAR 112

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 72.3 bits (178), Expect = 2e-15
 Identities = 18/100 (18%), Positives = 31/100 (31%)

Query: 136 DAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEA 195
           +     G     +     A   Y E ++  P  A  +SN A    +      A+    +A
Sbjct: 5   EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKA 64

Query: 196 VKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
           ++  P F  AY+       A+     A+     A      
Sbjct: 65  IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAE 104

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 72.3 bits (178), Expect = 3e-15
 Identities = 22/105 (20%), Positives = 34/105 (32%), Gaps = 7/105 (6%)

Query: 74  ANAWKEKG-------DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQ 126
           A   + +G       D   A++ Y   I+  P  A  +SN A+A  +     EA   C +
Sbjct: 4   AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63

Query: 127 ALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 171
           A+  +P  V A+        A      A      A          
Sbjct: 64  AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNG 108

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 70.8 bits (174), Expect = 8e-15
 Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 1/109 (0%)

Query: 204 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQA 262
           +     G  Y        A+  Y   ++  P +A  + N A+   +      AI    +A
Sbjct: 5   EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKA 64

Query: 263 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLG 311
           I  DP F+ AY     A   V     A++  +   +         +   
Sbjct: 65  IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSARE 113

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 64.6 bits (158), Expect = 1e-12
 Identities = 24/113 (21%), Positives = 39/113 (34%)

Query: 43  YYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFAD 102
           Y+   D+   +    E ++  P  A  Y N A A  +      AI     AIE  PNF  
Sbjct: 14  YFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVR 73

Query: 103 AWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAY 155
           A+   A+A +       A +    A   +  + +  S            Q+ +
Sbjct: 74  AYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQRF 126

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 60.4 bits (147), Expect = 3e-11
 Identities = 17/142 (11%), Positives = 36/142 (25%), Gaps = 34/142 (23%)

Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 330
           E     G           A++ Y + +   P                      A  Y   
Sbjct: 5   EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED--------------------ARGY--- 41

Query: 331 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 390
                      +N A    +  ++ +AI+  N+ +  DP      + +      +     
Sbjct: 42  -----------SNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYAS 90

Query: 391 AIQDYIRAITIRPTMAEAHANL 412
           A++    A T    +    +  
Sbjct: 91  ALETLDAARTKDAEVNNGSSAR 112

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 15/97 (15%), Positives = 31/97 (31%), Gaps = 6/97 (6%)

Query: 10  YKSGSYKQALEHSNSVYERNPLRTDNLLLL---GAIYYQLHDYDMCIARNEEALRLEPRF 66
           +    +  A++    + +R P   ++        A   +L  +   IA   +A+  +P F
Sbjct: 15  FTKSDWPNAVKAYTEMIKRAP---EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 71

Query: 67  AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADA 103
              Y   A A     +   A+     A        + 
Sbjct: 72  VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNG 108

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 74.7 bits (184), Expect = 1e-15
 Identities = 25/133 (18%), Positives = 50/133 (37%), Gaps = 4/133 (3%)

Query: 136 DAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEA 195
           +      N        + A   Y +A+ + P+ AI + N +  ++ +     AL     A
Sbjct: 14  EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 73

Query: 196 VKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMA 255
           ++L   +   Y        ALG  + A+  Y+  V+ +P+       A   Y+     + 
Sbjct: 74  IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKD----AKMKYQECNKIVK 129

Query: 256 ILYYKQAIGCDPR 268
              +++AI  D  
Sbjct: 130 QKAFERAIAGDEH 142

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 74.3 bits (183), Expect = 1e-15
 Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 9/122 (7%)

Query: 193 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQ 251
           K A +LK           N Y      + AI  Y +A++  P NAI +GN +  Y     
Sbjct: 11  KRAEELK--------TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC 62

Query: 252 ADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLG 311
              A+    +AI  D ++++ Y     +   +G+   A++ Y   + ++P    A     
Sbjct: 63  YGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ 122

Query: 312 NI 313
             
Sbjct: 123 EC 124

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 73.2 bits (180), Expect = 3e-15
 Identities = 28/113 (24%), Positives = 49/113 (43%)

Query: 55  RNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRK 114
           R+E       + AE     AN + +  D + AI++Y  AIEL P+ A  + N + AY+R 
Sbjct: 1   RDEPPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT 60

Query: 115 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT 167
                A     +A+ L+   +  +        A G  + A   Y   ++++P 
Sbjct: 61  ECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH 113

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 70.9 bits (174), Expect = 2e-14
 Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 7/109 (6%)

Query: 345 AVIYKQQGN-------YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIR 397
           A   K Q N       Y +AI  Y++ + ++P  A    NR   Y        A+ D  R
Sbjct: 13  AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 72

Query: 398 AITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
           AI +     + +   A++    G   AA++ Y+  + ++P   +A    
Sbjct: 73  AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKY 121

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 65.9 bits (161), Expect = 1e-12
 Identities = 25/105 (23%), Positives = 41/105 (39%)

Query: 43  YYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFAD 102
           Y++  DY+  I    +A+ L P  A  YGN + A+        A+     AIEL   +  
Sbjct: 23  YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK 82

Query: 103 AWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKA 147
            +   A++ M  G+   A +     + + P   DA        K 
Sbjct: 83  GYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI 127

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 62.8 bits (153), Expect = 2e-11
 Identities = 29/164 (17%), Positives = 50/164 (30%), Gaps = 36/164 (21%)

Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 330
           E      N        + AI+ Y+Q + L PS+                    A YY   
Sbjct: 14  EELKTQANDYFKAKDYENAIKFYSQAIELNPSN--------------------AIYY--- 50

Query: 331 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 390
                       N ++ Y +   Y  A+      + +D     G   R  +   +G+   
Sbjct: 51  -----------GNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 99

Query: 391 AIQDYIRAITIRPTMAEAHANLASAYK--DSGHVEAAIKSYKQA 432
           A++DY   + ++P   +A        K       E AI   +  
Sbjct: 100 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 23/140 (16%), Positives = 53/140 (37%), Gaps = 14/140 (10%)

Query: 10  YKSGSYKQALEHSNSVYERNPLRTDNLLLLG---AIYYQLHDYDMCIARNEEALRLEPRF 66
           +K+  Y+ A++  +   E NP    N +  G     Y +   Y   +     A+ L+ ++
Sbjct: 24  FKAKDYENAIKFYSQAIELNP---SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY 80

Query: 67  AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASA--YMRKGRLNEA---- 120
            + Y   A +    G    A+R Y   ++++P+  DA          +++     A    
Sbjct: 81  IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGD 140

Query: 121 --AQCCRQALALNPLLVDAH 138
              +    +L +  + ++  
Sbjct: 141 EHKRSVVDSLDIESMTIEDE 160

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 23/134 (17%), Positives = 38/134 (28%), Gaps = 34/134 (25%)

Query: 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 295
           A      A+ Y++    + AI +Y QAI  +P     Y N   A         A+    +
Sbjct: 13  AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 72

Query: 296 CLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYA 355
            + L                          Y K            +   A      G + 
Sbjct: 73  AIELDK-----------------------KYIKG-----------YYRRAASNMALGKFR 98

Query: 356 DAISCYNEVLRIDP 369
            A+  Y  V+++ P
Sbjct: 99  AALRDYETVVKVKP 112

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 72.3 bits (178), Expect = 3e-15
 Identities = 27/100 (27%), Positives = 38/100 (38%), Gaps = 7/100 (7%)

Query: 74  ANAWKEKG-------DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQ 126
           A   KE+G           A   Y  AI   P  A  ++N A  Y++  +  +A   CR+
Sbjct: 9   AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 68

Query: 127 ALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP 166
           AL L+   V AH  LG          EA +    A  +  
Sbjct: 69  ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 108

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 69.7 bits (171), Expect = 3e-14
 Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 2/101 (1%)

Query: 136 DAHSNLGN-LMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKE 194
                 GN L        EA +CY  A+   P  A+ ++N A  +++     +AL   + 
Sbjct: 10  QELKEQGNRLFV-GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 68

Query: 195 AVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
           A++L      A+  LG     +    EAI   QRA      
Sbjct: 69  ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 68.9 bits (169), Expect = 6e-14
 Identities = 21/89 (23%), Positives = 38/89 (42%)

Query: 350 QQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAH 409
               Y +A +CY   +  +PL A    NR   Y ++ +   A+ D  RA+ +     +AH
Sbjct: 21  VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAH 80

Query: 410 ANLASAYKDSGHVEAAIKSYKQALLLRPD 438
             L     +    + AI + ++A  L  +
Sbjct: 81  FFLGQCQLEMESYDEAIANLQRAYSLAKE 109

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 67.3 bits (165), Expect = 2e-13
 Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 9/116 (7%)

Query: 193 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQ 251
             A +LK          GN         EA  CY RA+   P  A+ + N A  Y +  Q
Sbjct: 7   PSAQELK--------EQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ 58

Query: 252 ADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQAL 307
            + A+   ++A+  D + ++A+  LG    ++   DEAI    +  SL        
Sbjct: 59  PEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNF 114

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 63.1 bits (154), Expect = 6e-12
 Identities = 18/90 (20%), Positives = 30/90 (33%)

Query: 43  YYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFAD 102
            +    Y    A    A+   P  A  Y N A  + +    + A+     A+EL      
Sbjct: 19  LFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK 78

Query: 103 AWSNLASAYMRKGRLNEAAQCCRQALALNP 132
           A   L    +     +EA    ++A +L  
Sbjct: 79  AHFFLGQCQLEMESYDEAIANLQRAYSLAK 108

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 53.9 bits (130), Expect = 9e-09
 Identities = 21/138 (15%), Positives = 36/138 (26%), Gaps = 34/138 (24%)

Query: 266 DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAAS 325
                +     GN L    +  EA  CY + ++  P      TN            A   
Sbjct: 5   KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNR-----------ALC- 52

Query: 326 YYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEI 385
                                 Y +      A++     L +D  +       G    E+
Sbjct: 53  ----------------------YLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM 90

Query: 386 GRVTDAIQDYIRAITIRP 403
               +AI +  RA ++  
Sbjct: 91  ESYDEAIANLQRAYSLAK 108

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 48.5 bits (116), Expect = 8e-07
 Identities = 18/130 (13%), Positives = 33/130 (25%), Gaps = 37/130 (28%)

Query: 240 GNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 299
           GN     +   +   A   Y +AI  +P     Y N       + + ++A+    + L L
Sbjct: 16  GN---RLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL 72

Query: 300 QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAIS 359
                                       KA              L     +  +Y +AI+
Sbjct: 73  DG-----------------------QSVKA-----------HFFLGQCQLEMESYDEAIA 98

Query: 360 CYNEVLRIDP 369
                  +  
Sbjct: 99  NLQRAYSLAK 108

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 17/108 (15%), Positives = 33/108 (30%), Gaps = 6/108 (5%)

Query: 10  YKSGSYKQALEHSNSVYERNPLRTDNLLLL---GAIYYQLHDYDMCIARNEEALRLEPRF 66
           +    Y +A         RNP      +        Y ++   +  +A    AL L+ + 
Sbjct: 20  FVGRKYPEAAACYGRAITRNP---LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS 76

Query: 67  AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRK 114
            + +  +     E    D AI     A  L       + +   + +R 
Sbjct: 77  VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI 124

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 21/77 (27%), Positives = 32/77 (41%)

Query: 366 RIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAA 425
            +   +A  L  +GN      +  +A   Y RAIT  P +A  + N A  Y      E A
Sbjct: 3   HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQA 62

Query: 426 IKSYKQALLLRPDFPEA 442
           +   ++AL L     +A
Sbjct: 63  LADCRRALELDGQSVKA 79

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490

 Score = 77.3 bits (191), Expect = 7e-15
 Identities = 54/302 (17%), Positives = 113/302 (37%), Gaps = 47/302 (15%)

Query: 82  DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGR-----LNEAAQCCRQALALNPLLVD 136
           D  +A  +Y  A E       + + L   Y  +G         +AQ  R++         
Sbjct: 166 DYVMAREWYSKAAEQ--GNVWSCNQLGYMY-SRGLGVERNDAISAQWYRKSATSG--DEL 220

Query: 137 AHSNLGNL-MKAQGLVQ---EAYSCYLEALRIQPTFAIAWSNLAGLFME----SGDLNRA 188
              +L ++     G+ Q   ++   + ++   +   +IA   L  +  +    + +  +A
Sbjct: 221 GQLHLADMYYFGIGVTQDYTQSRVLFSQS--AEQGNSIAQFRLGYILEQGLAGAKEPLKA 278

Query: 189 LQYYKEAVKLKPTFPDAYLNLGNVYK--ALGMPQ---EAIMCYQRAVQTRPNAIAFGNLA 243
           L++Y+++ +      D    L ++Y   A G+ +   +AI  Y ++ + + +A A  NL 
Sbjct: 279 LEWYRKSAEQG--NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE-QGDATAQANLG 335

Query: 244 STYYERGQA---DMAILYYKQAIGCDPRFLEAYNNLGNALKDVGR-----VDEAIQCYNQ 295
           + Y+  G       A+ ++++A         A  NLGNAL   G+       +A     +
Sbjct: 336 AIYFRLGSEEEHKKAVEWFRKA--AAKGEKAAQFNLGNALLQ-GKGVKKDEQQAAIWMRK 392

Query: 296 CLSLQPSHPQALTNLGNIYMEWNMLP----AAASYYKATLAVTTGLSAPFNNLAVIYKQQ 351
                     A   LG IY     +      A +++    A T  ++        I +++
Sbjct: 393 AAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFD--TASTNDMNLFGTENRNITEKK 448

Query: 352 GN 353
             
Sbjct: 449 LT 450

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490

 Score = 55.0 bits (133), Expect = 6e-08
 Identities = 47/272 (17%), Positives = 83/272 (30%), Gaps = 72/272 (26%)

Query: 184 DLNRALQYYKEAVKLKPTFPDAYLNLGNVYKA-LGMPQ---EAIMCYQRAVQTRPNAIAF 239
             N  L+  K+  +       A L LG  Y       +   +A+  ++RA +      A 
Sbjct: 22  LGNVNLEQLKQKAESG--EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG-YTPAE 78

Query: 240 GNLASTYYERGQ-----ADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGR-----VDEA 289
             L    Y  G+        A+++YK+A        +A  NLG    + G        E+
Sbjct: 79  YVLG-LRYMNGEGVPQDYAQAVIWYKKA--ALKGLPQAQQNLGVMYHE-GNGVKVDKAES 134

Query: 290 IQCYNQCLSLQPSHPQALTNLGNIYMEWNMLP----AAASYYKATLAVTTGLSAPFNNLA 345
           ++ +    + +        ++G+ Y E + +      A  +Y    A   G     N L 
Sbjct: 135 VKWFRL--AAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYS--KAAEQGNVWSCNQLG 190

Query: 346 VIYKQ-QG---NYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI 401
            +Y +  G   N A +   Y         +A      G+                     
Sbjct: 191 YMYSRGLGVERNDAISAQWYR-------KSAT----SGD--------------------- 218

Query: 402 RPTMAEAHANLASAYKDSGHVEAAIKSYKQAL 433
                    +LA  Y     V    + Y Q+ 
Sbjct: 219 ----ELGQLHLADMYYFGIGVT---QDYTQSR 243

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 73.0 bits (179), Expect = 4e-14
 Identities = 27/100 (27%), Positives = 38/100 (38%), Gaps = 7/100 (7%)

Query: 74  ANAWKEKG-------DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQ 126
           A   KE+G           A   Y  AI   P  A  ++N A  Y++  +  +A   CR+
Sbjct: 4   AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63

Query: 127 ALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP 166
           AL L+   V AH  LG          EA +    A  +  
Sbjct: 64  ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 103

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 68.8 bits (168), Expect = 8e-13
 Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 2/101 (1%)

Query: 136 DAHSNLGN-LMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKE 194
                 GN L        EA +CY  A+   P  A+ ++N A  +++     +AL   + 
Sbjct: 5   QELKEQGNRLFV-GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63

Query: 195 AVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
           A++L      A+  LG     +    EAI   QRA      
Sbjct: 64  ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 104

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 68.4 bits (167), Expect = 1e-12
 Identities = 21/89 (23%), Positives = 38/89 (42%)

Query: 350 QQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAH 409
               Y +A +CY   +  +PL A    NR   Y ++ +   A+ D  RA+ +     +AH
Sbjct: 16  VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAH 75

Query: 410 ANLASAYKDSGHVEAAIKSYKQALLLRPD 438
             L     +    + AI + ++A  L  +
Sbjct: 76  FFLGQCQLEMESYDEAIANLQRAYSLAKE 104

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 67.3 bits (164), Expect = 3e-12
 Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 9/116 (7%)

Query: 193 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQ 251
             A +LK          GN         EA  CY RA+   P  A+ + N A  Y +  Q
Sbjct: 2   PSAQELK--------EQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ 53

Query: 252 ADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQAL 307
            + A+   ++A+  D + ++A+  LG    ++   DEAI    +  SL        
Sbjct: 54  PEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNF 109

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 59.5 bits (144), Expect = 9e-10
 Identities = 18/90 (20%), Positives = 30/90 (33%)

Query: 43  YYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFAD 102
            +    Y    A    A+   P  A  Y N A  + +    + A+     A+EL      
Sbjct: 14  LFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK 73

Query: 103 AWSNLASAYMRKGRLNEAAQCCRQALALNP 132
           A   L    +     +EA    ++A +L  
Sbjct: 74  AHFFLGQCQLEMESYDEAIANLQRAYSLAK 103

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 51.8 bits (124), Expect = 4e-07
 Identities = 23/145 (15%), Positives = 41/145 (28%), Gaps = 34/145 (23%)

Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 330
           +     GN L    +  EA  CY + ++  P                      A YY   
Sbjct: 5   QELKEQGNRLFVGRKYPEAAACYGRAITRNPLV--------------------AVYY--- 41

Query: 331 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 390
                       N A+ Y +      A++     L +D  +       G    E+    +
Sbjct: 42  -----------TNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDE 90

Query: 391 AIQDYIRAITIRPTMAEAHANLASA 415
           AI +  RA ++         +   +
Sbjct: 91  AIANLQRAYSLAKEQRLNFGDDIPS 115

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 18/115 (15%), Positives = 36/115 (31%)

Query: 8   QMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFA 67
           +++    Y +A         RNPL           Y ++   +  +A    AL L+ +  
Sbjct: 13  RLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV 72

Query: 68  ECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQ 122
           + +  +     E    D AI     A  L       + +   + +R  +      
Sbjct: 73  KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNS 127

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 48.0 bits (114), Expect = 5e-06
 Identities = 17/98 (17%), Positives = 33/98 (33%)

Query: 234 PNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 293
           P+A       +  +   +   A   Y +AI  +P     Y N       + + ++A+   
Sbjct: 2   PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADC 61

Query: 294 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATL 331
            + L L     +A   LG   +E      A +  +   
Sbjct: 62  RRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAY 99

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 21/72 (29%), Positives = 31/72 (43%)

Query: 371 AADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYK 430
           +A  L  +GN      +  +A   Y RAIT  P +A  + N A  Y      E A+   +
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62

Query: 431 QALLLRPDFPEA 442
           +AL L     +A
Sbjct: 63  RALELDGQSVKA 74

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 67.0 bits (164), Expect = 1e-13
 Identities = 20/97 (20%), Positives = 29/97 (29%), Gaps = 8/97 (8%)

Query: 74  ANAWKEKG-------DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQ 126
               KE+G           A+  Y   I  +P     +SN A A ++ G   +A Q C+Q
Sbjct: 4   FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQ 63

Query: 127 ALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALR 163
            L                     L Q A       + 
Sbjct: 64  GLRYTSTAEHVAIRSKLQY-RLELAQGAVGSVQIPVV 99

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 64.3 bits (157), Expect = 1e-12
 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 1/96 (1%)

Query: 136 DAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEA 195
           +     GN +  QGL +EA  CY + +  QP   + +SN A   ++ G+  +A+Q  ++ 
Sbjct: 5   EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQG 64

Query: 196 VKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 231
           ++   T     +     Y  L + Q A+   Q  V 
Sbjct: 65  LRYTSTAEHVAIRSKLQY-RLELAQGAVGSVQIPVV 99

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 63.9 bits (156), Expect = 2e-12
 Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 1/84 (1%)

Query: 350 QQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAH 409
           +QG Y +A+ CY++++   P    G  N+     ++G  T AIQ   + +    T     
Sbjct: 16  KQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVA 75

Query: 410 ANLASAYKDSGHVEAAIKSYKQAL 433
                 Y+     + A+ S +  +
Sbjct: 76  IRSKLQYR-LELAQGAVGSVQIPV 98

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 61.2 bits (149), Expect = 1e-11
 Identities = 18/97 (18%), Positives = 32/97 (32%)

Query: 179 FMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIA 238
             + G    A+  Y + +  +P  P  Y N       LG   +AI   Q+ ++    A  
Sbjct: 14  LFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEH 73

Query: 239 FGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNN 275
               +   Y    A  A+   +  +       E Y+ 
Sbjct: 74  VAIRSKLQYRLELAQGAVGSVQIPVVEVDELPEGYDR 110

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 2/96 (2%)

Query: 204 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQA 262
           +     GN     G+ +EA+ CY + +  +P N + + N A    + G+   AI   +Q 
Sbjct: 5   EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQG 64

Query: 263 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLS 298
           +                 + +     A+      + 
Sbjct: 65  LRYTSTAEHVAIRSKLQYR-LELAQGAVGSVQIPVV 99

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 53.5 bits (129), Expect = 7e-09
 Identities = 13/99 (13%), Positives = 30/99 (30%), Gaps = 2/99 (2%)

Query: 43  YYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFAD 102
            ++   Y   +   ++ +  +P+    Y N A A  + G+   AI+     +        
Sbjct: 14  LFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEH 73

Query: 103 AWSNLASAYMRKGRLNEAAQCCRQAL-ALNPLLVDAHSN 140
                   Y R      A    +  +  ++ L      +
Sbjct: 74  VAIRSKLQY-RLELAQGAVGSVQIPVVEVDELPEGYDRS 111

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 53.1 bits (128), Expect = 8e-09
 Identities = 21/90 (23%), Positives = 31/90 (34%), Gaps = 3/90 (3%)

Query: 240 GNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 299
           GN   + +++G    A+  Y Q I   P+    Y+N   AL  +G   +AIQ   Q L  
Sbjct: 11  GN---SLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67

Query: 300 QPSHPQALTNLGNIYMEWNMLPAAASYYKA 329
             +           Y       A  S    
Sbjct: 68  TSTAEHVAIRSKLQYRLELAQGAVGSVQIP 97

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 25/129 (19%), Positives = 39/129 (30%), Gaps = 35/129 (27%)

Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 330
           E     GN+L   G   EA+ CY+Q ++ QP +P   +N             A +  K  
Sbjct: 5   EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNK------------AMALIK-- 50

Query: 331 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 390
                                G Y  AI    + LR    A    +     Y+ +     
Sbjct: 51  --------------------LGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR-LELAQG 89

Query: 391 AIQDYIRAI 399
           A+      +
Sbjct: 90  AVGSVQIPV 98

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 16/71 (22%), Positives = 28/71 (39%)

Query: 372 ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 431
            +    +GN+  + G   +A+  Y + IT +P     ++N A A    G    AI+  +Q
Sbjct: 4   FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQ 63

Query: 432 ALLLRPDFPEA 442
            L         
Sbjct: 64  GLRYTSTAEHV 74

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 12/91 (13%), Positives = 29/91 (31%), Gaps = 7/91 (7%)

Query: 8  QMYKSGSYKQALEHSNSVYERNPLRTDNLLLL---GAIYYQLHDYDMCIARNEEALRLEP 64
           ++K G Y++A+   + +    P    N +          +L +Y   I   ++ LR   
Sbjct: 13 SLFKQGLYREAVHCYDQLITAQP---QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69

Query: 65 RFAECYGNMANAWKEKGDIDLAIRYYLVAIE 95
                      ++       A+    + + 
Sbjct: 70 TAEHVAIRSKLQYR-LELAQGAVGSVQIPVV 99

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 66.6 bits (163), Expect = 5e-13
 Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 12/125 (9%)

Query: 193 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP----NAIAFGNLASTYYE 248
               +L+          GN     G    A+  Y +A+         A+   N A+ + +
Sbjct: 26  SSVEQLR--------KEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLK 77

Query: 249 RGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALT 308
               D A     +AI  D   ++A      AL+ +GR+D+A+    +C+SL+P +     
Sbjct: 78  LEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQE 137

Query: 309 NLGNI 313
            L NI
Sbjct: 138 ALRNI 142

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 65.1 bits (159), Expect = 2e-12
 Identities = 20/100 (20%), Positives = 40/100 (40%), Gaps = 3/100 (3%)

Query: 350 QQGNYADAISCYNEVLRIDPLAADGLV---NRGNTYKEIGRVTDAIQDYIRAITIRPTMA 406
           + G+Y  A++ Y + L +D    D  V   NR   + ++     A  +  +AI       
Sbjct: 40  KCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDV 99

Query: 407 EAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
           +A    + A +  G ++ A+   ++ + L P        L
Sbjct: 100 KALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEAL 139

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 62.0 bits (151), Expect = 2e-11
 Identities = 20/114 (17%), Positives = 42/114 (36%), Gaps = 10/114 (8%)

Query: 63  EPRFAECYGNMANAWKEKG-------DIDLAIRYYLVAIELRPNFAD---AWSNLASAYM 112
           EPR A    +     +++G       D   A+  Y  A+ L     D      N A+ ++
Sbjct: 17  EPRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHL 76

Query: 113 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP 166
           +    ++A     +A+  +   V A       ++  G + +A       + ++P
Sbjct: 77  KLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEP 130

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 62.0 bits (151), Expect = 2e-11
 Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 3/108 (2%)

Query: 43  YYQLHDYDMCIARNEEALRLEPRFAE---CYGNMANAWKEKGDIDLAIRYYLVAIELRPN 99
            ++  DY   +A   +AL L+    +    + N A    +  D D A      AIE    
Sbjct: 38  LFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG 97

Query: 100 FADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKA 147
              A    + A  + GRL++A    ++ ++L P        L N+   
Sbjct: 98  DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 61.6 bits (150), Expect = 2e-11
 Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 5/109 (4%)

Query: 131 NPLLVDAHSNLGN-LMKAQGLVQEAYSCYLEALRIQPTF---AIAWSNLAGLFMESGDLN 186
               V+     GN L K  G    A + Y +AL +  T    A+   N A   ++  D +
Sbjct: 24  GASSVEQLRKEGNELFKC-GDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYD 82

Query: 187 RALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
           +A     +A++       A        + LG   +A++  QR V   P 
Sbjct: 83  KAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPK 131

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 59.7 bits (145), Expect = 1e-10
 Identities = 25/147 (17%), Positives = 44/147 (29%), Gaps = 31/147 (21%)

Query: 266 DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAAS 325
               +E     GN L   G    A+  Y Q L L  +                     A 
Sbjct: 24  GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQD-----------------QAV 66

Query: 326 YYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEI 385
            +               N A  + +  +Y  A +  ++ +  D      L  R    +++
Sbjct: 67  LH--------------RNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKL 112

Query: 386 GRVTDAIQDYIRAITIRPTMAEAHANL 412
           GR+  A+ D  R +++ P        L
Sbjct: 113 GRLDQAVLDLQRCVSLEPKNKVFQEAL 139

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 52.7 bits (127), Expect = 3e-08
 Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 3/103 (2%)

Query: 8   QMYKSGSYKQALEHSNSVYERNPLRTDNLLLLG---AIYYQLHDYDMCIARNEEALRLEP 64
           +++K G Y  AL         +    D  +L     A + +L DYD       +A+  + 
Sbjct: 37  ELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG 96

Query: 65  RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNL 107
              +     + A ++ G +D A+      + L P        L
Sbjct: 97  GDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEAL 139

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452

 Score = 70.2 bits (172), Expect = 1e-12
 Identities = 52/318 (16%), Positives = 103/318 (32%), Gaps = 45/318 (14%)

Query: 73  MANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKG---RLNEAAQCCRQALA 129
           +AN   ++GD   A + Y    EL   +++A   LA   +      ++ +A    R A  
Sbjct: 9   LANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAAD 66

Query: 130 LNPLLVDAHSNLGNLMKA-QGLVQ----EAYSCYLEALRIQPTFAIAWSNLAGLFMESG- 183
            +P    A + LG L+ A  G  +    EA S   +A             LA L+++   
Sbjct: 67  TSP---RAQARLGRLLAAKPGATEAEHHEAESLLKKAFANG--EGNTLIPLAMLYLQYPH 121

Query: 184 ---DLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQ---EAIMCYQRAVQTRPNAI 237
              ++N   Q  +        +P+A L    +Y+  G      + +    +A       I
Sbjct: 122 SFPNVNAQQQISQWQ---AAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNT-TDI 177

Query: 238 AFGNLASTYYERG---QADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 294
            +  LA+ Y ++    Q    +   +         + A      A + +G          
Sbjct: 178 CYVELATVYQKKQQPEQQAELLKQMEAG--VSRGTVTAQRVDSVA-RVLGDATLGTPDEK 234

Query: 295 QCLSLQPS----HPQALTNLGNIYMEWNMLP---AAASYYKATLAVTTGLSAPFNNLAVI 347
              +L       +P +  +L  +  ++  L        Y                 L  +
Sbjct: 235 TAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLD--NGRAADQPRAELLLGKL 292

Query: 348 YKQ-QG---NYADAISCY 361
           Y + +    +   A + +
Sbjct: 293 YYEGKWVPADAKAAEAHF 310

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452

 Score = 65.1 bits (159), Expect = 4e-11
 Identities = 49/320 (15%), Positives = 96/320 (30%), Gaps = 45/320 (14%)

Query: 71  GNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGR-----LNEAAQCCR 125
            ++    ++   I  A   Y  A +       A + L      K        +EA    +
Sbjct: 42  ADIQVGTRDPAQIKQAEATYRAAAD---TSPRAQARLGRLLAAKPGATEAEHHEAESLLK 98

Query: 126 QALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT-FAIAWSNLAGLFMESG- 183
           +A A      +    L  L           +   +  + Q   +  A      L+   G 
Sbjct: 99  KAFANG--EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGT 156

Query: 184 --DLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQ---EAIMCYQRAVQTRPNAIA 238
                  ++   +A     T    Y+ L  VY+    P+   E +   +  V  R    A
Sbjct: 157 YDQHLDDVERICKAAL--NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVS-RGTVTA 213

Query: 239 FGNLASTY-YERGQADM-----AILYYKQAIGCDPRFLEAYNNLGNALKDVGRV---DEA 289
               +                 A    ++     P    ++ +L   L D   +   ++ 
Sbjct: 214 QRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYP---ASWVSLAQLLYDFPELGDVEQM 270

Query: 290 IQCYNQCLSLQPSHPQALTNLGNIYMEWNMLP----AAASYYKATLAVTTGLSAPFNNLA 345
           ++  +         P+A   LG +Y E   +P    AA ++++   AV   ++A    L 
Sbjct: 271 MKYLDN--GRAADQPRAELLLGKLYYEGKWVPADAKAAEAHFE--KAVGREVAA-DYYLG 325

Query: 346 VIYKQ-QG---NYADAISCY 361
            IY++          A+   
Sbjct: 326 QIYRRGYLGKVYPQKALDHL 345

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452

 Score = 62.8 bits (153), Expect = 2e-10
 Identities = 49/295 (16%), Positives = 83/295 (28%), Gaps = 37/295 (12%)

Query: 175 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQ---EAIMCYQRAVQ 231
           LA   ++ GD   A Q Y++  +L   + +A + L ++      P    +A   Y+ A  
Sbjct: 9   LANEALKRGDTVTAQQNYQQLAELG--YSEAQVGLADIQVGTRDPAQIKQAEATYRAAAD 66

Query: 232 TRPNAIAFGNLASTYYERGQA-----DMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRV 286
           T  +  A   L      +  A       A    K+A             L          
Sbjct: 67  T--SPRAQARLGRLLAAKPGATEAEHHEAESLLKKA--FANGEGNTLIPLAMLYLQYPHS 122

Query: 287 DEAIQCYNQCLSLQPS-HPQALTNLGNIYMEW----NMLPAAASYYKATLAVTTGLSAPF 341
              +    Q    Q + +P+A      +Y         L       KA L         +
Sbjct: 123 FPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALN---TTDICY 179

Query: 342 NNLAVIYKQQG---NYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRA 398
             LA +Y+++      A+ +      +                    G  T    D   A
Sbjct: 180 VELATVYQKKQQPEQQAELLKQMEAGVSRG--TVTAQRVDSVARVL-GDATLGTPDEKTA 236

Query: 399 ITIRPTMAEAHA----NLASAYKDSGHV---EAAIKSYKQALLLRPDFPEATCNL 446
             +   +A  +     +LA    D   +   E  +K          D P A   L
Sbjct: 237 QALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLL 289

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452

 Score = 52.8 bits (127), Expect = 3e-07
 Identities = 43/332 (12%), Positives = 90/332 (27%), Gaps = 77/332 (23%)

Query: 80  KGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGR----LNEAAQCCRQALALNPLLV 135
           + +   A      A        +    LA  Y++       +N   Q  +   A  P   
Sbjct: 87  EAEHHEAESLLKKAFAN--GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYP--- 141

Query: 136 DAHSNLGNLMKAQGLVQ---EAYSCYLEALRIQPTFAIAWSNLAGLFMESG---DLNRAL 189
           +A      L + QG      +      +A     T  I +  LA ++ +          L
Sbjct: 142 EAGLAQVLLYRTQGTYDQHLDDVERICKA--ALNTTDICYVELATVYQKKQQPEQQAELL 199

Query: 190 QYY-------------------------------KEAVKL----KPTFPDAYLNLGNVYK 214
           +                                 K A  L     P +P ++++L  +  
Sbjct: 200 KQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLY 259

Query: 215 ALGMPQ---EAIMCYQRAVQTRPNAIAFGNLASTYYE-RGQA---DMAILYYKQAIGCDP 267
                    + +              A   L   YYE +        A  ++++A+G + 
Sbjct: 260 DFPELGDVEQMMKYLDNGRA-ADQPRAELLLGKLYYEGKWVPADAKAAEAHFEKAVGREV 318

Query: 268 RFLEAYNNLGNALK--DVGRVD--EAIQCYNQCLSLQPSHPQALTNLGNIYM-----EWN 318
               A   LG   +   +G+V   +A+       + +     A   +  ++      + +
Sbjct: 319 ---AADYYLGQIYRRGYLGKVYPQKALDHLLT--AARNGQNSADFAIAQLFSQGKGTKPD 373

Query: 319 MLPAAASYYKATLAVTTGLSAPFNNLAVIYKQ 350
               A  + +  LA         +    +   
Sbjct: 374 -PLNAYVFSQ--LAKAQDTPEANDLATQLEAP 402

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273

 Score = 65.3 bits (160), Expect = 1e-11
 Identities = 55/282 (19%), Positives = 103/282 (36%), Gaps = 46/282 (16%)

Query: 101 ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNL-MKAQGLVQ---EAYS 156
                 L +   ++    +A +   +A  L         NLG L  + QG+ +   +A S
Sbjct: 6   PKELVGLGAKSYKEKDFTQAKKYFEKACDLK--ENSGCFNLGVLYYQGQGVEKNLKKAAS 63

Query: 157 CYLEALRIQPTFAIAWSNLAGLFMESG-----DLNRALQYYKEAVKLKPTFPDAYLNLGN 211
            Y +A  +   ++     L  L+  SG     + N+ALQYY +A  LK  + +   +LG 
Sbjct: 64  FYAKACDLN--YSNGCHLLGNLY-YSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGG 118

Query: 212 VY-KALGMPQ---EAIMCYQRAVQTRPNAIAFGNLASTYYERGQ-----ADMAILYYKQA 262
           +Y     + +   +A+  + +A     +      L  + Y+ G+        A+  Y +A
Sbjct: 119 IYHDGKVVTRDFKKAVEYFTKACD-LNDGDGCTILG-SLYDAGRGTPKDLKKALASYDKA 176

Query: 263 IGCDPRFLEAYNNLGNALKDVGR-----VDEAIQCYNQCLSLQPSHPQALTNLGNIYM-- 315
             CD +      N GN     G        EA+  Y++  + +  +     NLG +    
Sbjct: 177 --CDLKDSPGCFNAGNMYHH-GEGATKNFKEALARYSK--ACELENGGGCFNLGAMQYNG 231

Query: 316 ---EWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNY 354
                N    A   +K       G     + L  +   + ++
Sbjct: 232 EGVTRN-EKQAIENFK--KGCKLGAKGACDILKQLK-IKVHH 269

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273

 Score = 57.6 bits (140), Expect = 4e-09
 Identities = 46/220 (20%), Positives = 83/220 (37%), Gaps = 41/220 (18%)

Query: 169 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVY-KALGMPQ---EAIM 224
                 L     +  D  +A +Y+++A  LK        NLG +Y +  G+ +   +A  
Sbjct: 6   PKELVGLGAKSYKEKDFTQAKKYFEKACDLK--ENSGCFNLGVLYYQGQGVEKNLKKAAS 63

Query: 225 CYQRAVQTRPNAIAFGNLASTYYERGQA-----DMAILYYKQAIGCDPRFLEAYNNLGNA 279
            Y +A      +     L +  Y  GQ      + A+ YY +A  CD ++ E   +LG  
Sbjct: 64  FYAKACD-LNYSNGCHLLGN-LYYSGQGVSQNTNKALQYYSKA--CDLKYAEGCASLGGI 119

Query: 280 LKDVGR-----VDEAIQCY----NQCLSLQPSHPQALTNLGNIYMEWNMLP----AAASY 326
             D G+       +A++ +    +       +     T LG++Y      P     A + 
Sbjct: 120 YHD-GKVVTRDFKKAVEYFTKACDL------NDGDGCTILGSLYDAGRGTPKDLKKALAS 172

Query: 327 YKATLAVTTGLSAPFNNLAVIYKQ-QG---NYADAISCYN 362
           Y    A     S    N   +Y   +G   N+ +A++ Y+
Sbjct: 173 YD--KACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYS 210

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Length = 282

 Score = 63.6 bits (154), Expect = 4e-11
 Identities = 29/252 (11%), Positives = 57/252 (22%), Gaps = 35/252 (13%)

Query: 176 AGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNL-------GNVYKALGMPQEAIMCYQR 228
           + + M      R+L  + E      +  DA++                   +        
Sbjct: 13  SAVSMLPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSG 72

Query: 229 AVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDE 288
           +VQ   + +           R             +         +          G   +
Sbjct: 73  SVQISMSTLNA---------RIAIGGLYGDITYPVTSPLAITMGF---AACEAAQGNYAD 120

Query: 289 AIQCYNQCLSLQPSHPQALTNLGNIYME---W----NMLPAAASYYKATLAVTTGLSAPF 341
           A++           H  A      +Y     W    + + +A  +    LA   G+    
Sbjct: 121 AMEALEAAPVAGSEHLVAWM-KAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGV---- 175

Query: 342 NNLAVIYKQQGNYADAISCYNEVL---RIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRA 398
               V       + +A     E       +  A           +  G  + A+      
Sbjct: 176 -AHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234

Query: 399 ITIRPTMAEAHA 410
            T  P    A A
Sbjct: 235 QTTHPEPKVAAA 246

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Length = 282

 Score = 49.0 bits (116), Expect = 3e-06
 Identities = 35/282 (12%), Positives = 68/282 (24%), Gaps = 41/282 (14%)

Query: 115 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEAL-RIQPTFAIAWS 173
                +     +    +    DA            +             ++  +  I+ S
Sbjct: 20  MSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMS 79

Query: 174 NLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR 233
            L       G L   + Y         +     +       A G   +A+   + A    
Sbjct: 80  TLNARI-AIGGLYGDITYPVT------SPLAITMGFAACEAAQGNYADAMEALEAAPVAG 132

Query: 234 PNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFL--EAYNNLGNALKDVGRVDEAIQ 291
              +     A  Y    +    I   K A     +FL   A    G A  ++    EA +
Sbjct: 133 SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAER 192

Query: 292 CYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQ 351
              +          A                A ++Y                 A+  + Q
Sbjct: 193 RLTEANDSPAGEACA---------------RAIAWYL----------------AMARRSQ 221

Query: 352 GNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQ 393
           GN + A++    +    P        +  +Y+      + I 
Sbjct: 222 GNESAAVALLEWLQTTHPEPKVAAALKDPSYRLKTTTAEQIA 263

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Length = 282

 Score = 45.5 bits (107), Expect = 3e-05
 Identities = 21/142 (14%), Positives = 35/142 (24%), Gaps = 6/142 (4%)

Query: 2   HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
            M  A      G+Y  A+E   +             +   +Y     +   I + + A +
Sbjct: 105 TMGFAACEAAQGNYADAMEALEAAPVAGSEHLVA-WMKAVVYGAAERWTDVIDQVKSAGK 163

Query: 62  LEPRFAECYGN--MANAWKEKGDIDLAIRYYLVAIE---LRPNFADAWSNLASAYMRKGR 116
              +F           A         A R    A +              LA A   +G 
Sbjct: 164 WPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGN 223

Query: 117 LNEAAQCCRQALALNPLLVDAH 138
            + A          +P    A 
Sbjct: 224 ESAAVALLEWLQTTHPEPKVAA 245

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 64.1 bits (156), Expect = 5e-11
 Identities = 27/161 (16%), Positives = 48/161 (29%), Gaps = 26/161 (16%)

Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 330
                 G      G+  +A+  Y + +S           L       N     A   +  
Sbjct: 148 TIVKERGTVYFKEGKYKQALLQYKKIVSW----------LEYESSFSNEEAQKAQALRLA 197

Query: 331 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 390
                       NLA+ + +   ++ AI   N+ L +D     GL  RG  +  +     
Sbjct: 198 S---------HLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFEL 248

Query: 391 AIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 431
           A  D+ + + + P    A   LA         +  I+    
Sbjct: 249 ARADFQKVLQLYPNNKAAKTQLAV-------CQQRIRRQLA 282

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 54.1 bits (130), Expect = 9e-08
 Identities = 28/141 (19%), Positives = 47/141 (33%), Gaps = 19/141 (13%)

Query: 8   QMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFA 67
             +K G YKQAL      Y++             + +  ++       NEEA + +    
Sbjct: 156 VYFKEGKYKQALLQ----YKK------------IVSWLEYESSFS---NEEAQKAQALRL 196

Query: 68  ECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQA 127
             + N+A    +      AI     A+EL  N     S    A++       A    ++ 
Sbjct: 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKV 256

Query: 128 LALNPLLVDAHSNLGNLMKAQ 148
           L L P    A + L    +  
Sbjct: 257 LQLYPNNKAAKTQLAVCQQRI 277

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 53.7 bits (129), Expect = 1e-07
 Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 24/138 (17%)

Query: 192 YKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFG----------- 240
            +++  +K          G VY   G  ++A++ Y++ V       +F            
Sbjct: 144 LEQSTIVK--------ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALR 195

Query: 241 -----NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 295
                NLA  + +      AI    +A+  D    +  +  G A   V   + A   + +
Sbjct: 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQK 255

Query: 296 CLSLQPSHPQALTNLGNI 313
            L L P++  A T L   
Sbjct: 256 VLQLYPNNKAAKTQLAVC 273

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 52.2 bits (125), Expect = 4e-07
 Identities = 23/143 (16%), Positives = 50/143 (34%), Gaps = 17/143 (11%)

Query: 42  IYYQLHDYDMCIARNEEALRLEPRF--AECYGNMANAWKEKGDIDLAIRYYLVAIEL--- 96
           + Y+LH      A+    +  E +   +         + ++G    A+  Y   +     
Sbjct: 120 LKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEY 179

Query: 97  RPNFADA------------WSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNL 144
             +F++               NLA  +++    + A + C +AL L+       S  G  
Sbjct: 180 ESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEA 239

Query: 145 MKAQGLVQEAYSCYLEALRIQPT 167
             A    + A + + + L++ P 
Sbjct: 240 HLAVNDFELARADFQKVLQLYPN 262

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 48.7 bits (116), Expect = 4e-06
 Identities = 18/117 (15%), Positives = 39/117 (33%), Gaps = 15/117 (12%)

Query: 134 LVDAHSNLGNLMKAQGLVQEAYSCYLEALR---------------IQPTFAIAWSNLAGL 178
                   G +   +G  ++A   Y + +                 Q     +  NLA  
Sbjct: 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205

Query: 179 FMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
            ++    + A++   +A++L           G  + A+   + A   +Q+ +Q  PN
Sbjct: 206 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN 262

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 48.0 bits (114), Expect = 7e-06
 Identities = 23/149 (15%), Positives = 49/149 (32%), Gaps = 27/149 (18%)

Query: 343 NLAVIYKQQGN-------YADAISCYNEVLR---------------IDPLAADGLVNRGN 380
             + I K++G        Y  A+  Y +++                   L     +N   
Sbjct: 145 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204

Query: 381 TYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFP 440
            + ++   + AI+   +A+ +     +  +    A+      E A   +++ L L P+  
Sbjct: 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK 264

Query: 441 EATCNLLHTLQCVCSWEDRDR-----MFS 464
            A   L    Q +     R++     MF 
Sbjct: 265 AAKTQLAVCQQRIRRQLAREKKLYANMFE 293

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.9 bits (157), Expect = 9e-11
 Identities = 100/694 (14%), Positives = 188/694 (27%), Gaps = 256/694 (36%)

Query: 15  YKQ-ALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR-----LEP-RFA 67
            +Q ++     + +R+ L  DN +           Y++   +    LR     L P +  
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFA--------KYNVSRLQPYLKLRQALLELRPAKNV 153

Query: 68  ECYGNMANAWKEKGDIDLAIRYYL-VAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQ 126
              G +  + K      +A+   L   ++ + +F   W NL               C   
Sbjct: 154 LIDG-VLGSGKTW----VALDVCLSYKVQCKMDFKIFWLNLK-------------NCNSP 195

Query: 127 ALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLN 186
              L  L          L             Y    +I P +     + + + +    + 
Sbjct: 196 ETVLEMLQ--------KL------------LY----QIDPNWTSRSDHSSNIKLRIHSIQ 231

Query: 187 RALQYYKEAVKLKPTFPDAYLNLGNVY-----KALGMPQEAIMCYQRAVQTRPNAIAFGN 241
             L+     +K KP + +  L L NV       A       + C +  + TR   +    
Sbjct: 232 AELRRL---LKSKP-YENCLLVLLNVQNAKAWNAFN-----LSC-KILLTTRFKQVTDFL 281

Query: 242 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP 301
            A+T         ++                              DE      + L  +P
Sbjct: 282 SAATTTHISLDHHSMTLTP--------------------------DEVKSLLLKYLDCRP 315

Query: 302 SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCY 361
                             LP                + P                 +S  
Sbjct: 316 Q----------------DLPREVL-----------TTNPR---------------RLSII 333

Query: 362 NEVLRIDPLAADGLVNRGNTYKEIG--RVTDAIQDYIRAITIRPTMAEAHANLASAYKDS 419
            E +R             + +K +   ++T  I+  +  +   P  AE        Y+  
Sbjct: 334 AESIRDGL-------ATWDNWKHVNCDKLTTIIESSLNVLE--P--AE--------YR-- 372

Query: 420 GHVEAAIKSYKQALLLRPD--FPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMS 477
                  K + +  +  P    P    +L+        W D  +  S+V  ++ +    S
Sbjct: 373 -------KMFDRLSVFPPSAHIPTILLSLI--------WFDVIK--SDVMVVVNKLHKYS 415

Query: 478 VLPSVQPFHAIAYP-IDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRR 536
           ++        I+ P I   L +++  +YA H SI+        F+    IP  LD     
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD----- 470

Query: 537 LRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDV 596
               Y  S  G+H           + N E+ E           T +R         F+D 
Sbjct: 471 ---QYFYSHIGHH-----------LKNIEHPERM---------TLFRMV-------FLDF 500

Query: 597 SAMSSDMIAKLINEDK--------IQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGT 648
             +      K+ ++          +  L  L  Y    +  I    P   ++        
Sbjct: 501 RFLE----QKIRHDSTAWNASGSILNTLQQLKFY----KPYICDNDPKYERLVN------ 546

Query: 649 TGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHC 682
              + +D+L                E L+   + 
Sbjct: 547 ---AILDFLPK------------IEENLICSKYT 565

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 4e-04
 Identities = 49/318 (15%), Positives = 93/318 (29%), Gaps = 85/318 (26%)

Query: 591 EHFVDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTG 650
             F D  A   +   K + +    IL      +K   + I  M    +  +   F     
Sbjct: 23  SVFED--AFVDNFDCKDVQDMPKSIL------SKEEIDHII-MSKDAVSGTLRLF----- 68

Query: 651 ASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLP 710
                 L++              E++V      FV +  + N   L    + ++    + 
Sbjct: 69  ----WTLLS------------KQEEMVQK----FVEEVLRINYKFLMSPIKTEQRQPSMM 108

Query: 711 EDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSAL--WLLRFPAAGEMRLRAYAVAQGVQ 768
              +I    ++LY  D ++F  + N+ R  P   L   LL      E+R     +  G  
Sbjct: 109 TRMYI-EQRDRLYN-DNQVFAKY-NVSRLQPYLKLRQALL------ELRPAKNVLIDG-- 157

Query: 769 PDQIIFTDVAM----KQEHIRRSSLA-DLFLDTPLCNAHTTGTDILWAGL-----PMITL 818
                     +    K      + +A D+ L   +         I W  L     P   L
Sbjct: 158 ----------VLGSGK------TWVALDVCLSYKVQCKMDFK--IFWLNLKNCNSPETVL 199

Query: 819 -PLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQAL--------TNK 869
             L+K+  ++  +   +       I   +   +     L   +     L           
Sbjct: 200 EMLQKLLYQIDPNWT-SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258

Query: 870 LKSVRLTCPLFDTARWVS 887
             +  L+C +  T R+  
Sbjct: 259 WNAFNLSCKILLTTRFKQ 276

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 60.1 bits (146), Expect = 1e-10
 Identities = 28/161 (17%), Positives = 46/161 (28%), Gaps = 22/161 (13%)

Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 330
           EA    GN L       EAI  Y   L+   +           ++E +            
Sbjct: 12  EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRK-------NIP 64

Query: 331 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 390
           L         + N++  Y   G+  +A    +EVL+ +      L  R        ++ +
Sbjct: 65  L---------YANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDE 115

Query: 391 AIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 431
           A +D    +   P  A   A           V       K 
Sbjct: 116 AEEDLKLLLRNHPAAASVVAREMKI------VTERRAEKKA 150

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 19/129 (14%), Positives = 36/129 (27%), Gaps = 15/129 (11%)

Query: 182 SGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGN 241
             D   A+  Y++A+    T           +  L                R N   + N
Sbjct: 24  QKDYKEAIDAYRDALTRLDTLILREKPGEPEWVEL---------------DRKNIPLYAN 68

Query: 242 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP 301
           ++  Y   G    A     + +  +    +A      A     ++DEA +     L   P
Sbjct: 69  MSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128

Query: 302 SHPQALTNL 310
           +    +   
Sbjct: 129 AAASVVARE 137

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 21/139 (15%), Positives = 44/139 (31%), Gaps = 16/139 (11%)

Query: 10  YKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAEC 69
           +    YK+A++     Y              A+               E + L+ +    
Sbjct: 22  FVQKDYKEAIDA----YRD------------ALTRLDTLILREKPGEPEWVELDRKNIPL 65

Query: 70  YGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALA 129
           Y NM+  +   GD+  A       ++       A    A A +   +L+EA +  +  L 
Sbjct: 66  YANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125

Query: 130 LNPLLVDAHSNLGNLMKAQ 148
            +P      +    ++  +
Sbjct: 126 NHPAAASVVAREMKIVTER 144

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 22/134 (16%), Positives = 38/134 (28%), Gaps = 25/134 (18%)

Query: 343 NLAVIYKQQGN-------YADAISCYNEVLR------------------IDPLAADGLVN 377
                 +Q+GN       Y +AI  Y + L                   +D        N
Sbjct: 9   KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYAN 68

Query: 378 RGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRP 437
               Y  IG + +A +     +    T  +A    A A   +  ++ A +  K  L   P
Sbjct: 69  MSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128

Query: 438 DFPEATCNLLHTLQ 451
                    +  + 
Sbjct: 129 AAASVVAREMKIVT 142

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 43.1 bits (102), Expect = 8e-05
 Identities = 21/114 (18%), Positives = 38/114 (33%), Gaps = 18/114 (15%)

Query: 140 NLGNLMKAQGLVQEAYSCYLEALR------------------IQPTFAIAWSNLAGLFME 181
             GN +  Q   +EA   Y +AL                   +       ++N++  ++ 
Sbjct: 16  QKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLN 75

Query: 182 SGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
            GDL+ A +   E +K + T   A         A     EA    +  ++  P 
Sbjct: 76  IGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 59.4 bits (144), Expect = 4e-10
 Identities = 27/162 (16%), Positives = 51/162 (31%), Gaps = 27/162 (16%)

Query: 271 EAYNNLGNAL-KDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKA 329
                 GN   K    ++EAI  Y + L                  +  +L       + 
Sbjct: 39  FDIKEEGNEFFKK-NEINEAIVKYKEALDFFIHTE---------EWDDQILLDKKKNIEI 88

Query: 330 TLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVT 389
           +            NLA  Y +  +Y  AI   ++VL+ID      L   G      G + 
Sbjct: 89  SC---------NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLE 139

Query: 390 DAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 431
           +A ++  +A ++ P   +   +              +K  ++
Sbjct: 140 EAKENLYKAASLNPNNLDIRNSYEL-------CVNKLKEARK 174

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 53.6 bits (129), Expect = 4e-08
 Identities = 24/135 (17%), Positives = 51/135 (37%), Gaps = 17/135 (12%)

Query: 179 FMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIA 238
           F +  ++N A+  YKEA+       +                + ++  ++ ++       
Sbjct: 48  FFKKNEINEAIVKYKEALDFFIHTEE-------------WDDQILLDKKKNIE----ISC 90

Query: 239 FGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLS 298
             NLA+ Y +      AI +  + +  D   ++A   LG A    G ++EA +   +  S
Sbjct: 91  NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150

Query: 299 LQPSHPQALTNLGNI 313
           L P++     +    
Sbjct: 151 LNPNNLDIRNSYELC 165

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 52.1 bits (125), Expect = 1e-07
 Identities = 25/139 (17%), Positives = 49/139 (35%), Gaps = 18/139 (12%)

Query: 10  YKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAEC 69
           +K     +A+      Y+             A+ + +H  +          + +     C
Sbjct: 49  FKKNEINEAIVK----YKE------------ALDFFIHTEEW--DDQILLDKKKNIEISC 90

Query: 70  YGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALA 129
             N+A  + +  D   AI +    +++  N   A   L  A M  G L EA +   +A +
Sbjct: 91  NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150

Query: 130 LNPLLVDAHSNLGNLMKAQ 148
           LNP  +D  ++    +   
Sbjct: 151 LNPNNLDIRNSYELCVNKL 169

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 49.4 bits (118), Expect = 8e-07
 Identities = 24/119 (20%), Positives = 41/119 (34%), Gaps = 23/119 (19%)

Query: 72  NMANAWKEKG-------DIDLAIRYYLVAIELRPNFAD----------------AWSNLA 108
             A   KE+G       +I+ AI  Y  A++   +  +                   NLA
Sbjct: 36  QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 95

Query: 109 SAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT 167
           + Y +     +A     + L ++   V A   LG      G ++EA     +A  + P 
Sbjct: 96  TCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 154

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 28/150 (18%)

Query: 343 NLAVIYKQQGN-------YADAISCYNEVLRIDPLAADG----------------LVNRG 379
             A   K++GN         +AI  Y E L       +                  +N  
Sbjct: 36  QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 95

Query: 380 NTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 439
             Y +      AI    + + I     +A   L  A    G +E A ++  +A  L P+ 
Sbjct: 96  TCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN 155

Query: 440 PEATCNLLHTLQCVCSWEDRDR-----MFS 464
            +   +    +  +     +D+     MF 
Sbjct: 156 LDIRNSYELCVNKLKEARKKDKLTFGGMFD 185

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 47.1 bits (112), Expect = 5e-06
 Identities = 24/113 (21%), Positives = 38/113 (33%), Gaps = 18/113 (15%)

Query: 140 NLGN-LMKAQGLVQEAYSCYLEALRI----------------QPTFAIAWSNLAGLFMES 182
             GN   K +  + EA   Y EAL                  +        NLA  + ++
Sbjct: 43  EEGNEFFK-KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKN 101

Query: 183 GDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
            D  +A+ +  + +K+      A   LG      G  +EA     +A    PN
Sbjct: 102 KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 154

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158

 Score = 57.1 bits (137), Expect = 1e-09
 Identities = 32/152 (21%), Positives = 52/152 (34%), Gaps = 35/152 (23%)

Query: 15  YKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMA 74
           ++Q  + + + Y+ NPL  DNL   G +  +L  +                         
Sbjct: 18  FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFH------------------------ 53

Query: 75  NAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRL-----------NEAAQC 123
           +    K  I  AI  +  A+ + P   +A   + +AY     L           + A Q 
Sbjct: 54  SISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQF 113

Query: 124 CRQALALNPLLVDAHSNLGNLMKAQGLVQEAY 155
            +QA+   P       +L    KA  L  EAY
Sbjct: 114 FQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAY 145

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158

 Score = 56.3 bits (135), Expect = 2e-09
 Identities = 19/122 (15%), Positives = 42/122 (34%), Gaps = 25/122 (20%)

Query: 135 VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD---------- 184
           +D  +    ++  +    +         +  P  A   +   G+ +E             
Sbjct: 6   MDTETEFDRILLFE----QIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQM 61

Query: 185 LNRALQYYKEAVKLKPTFPDAYLNLGNVY-----------KALGMPQEAIMCYQRAVQTR 233
           +  A+  ++EA+ + P   +A   +GN Y           +A      A   +Q+AV  +
Sbjct: 62  IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121

Query: 234 PN 235
           P+
Sbjct: 122 PD 123

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158

 Score = 55.5 bits (133), Expect = 4e-09
 Identities = 27/136 (19%), Positives = 42/136 (30%), Gaps = 34/136 (25%)

Query: 186 NRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLAST 245
            +  Q  +   K  P   D     G V   L              Q    + A   +   
Sbjct: 19  EQIRQDAENTYKSNPLDADNLTRWGGVLLELS-------------QFHSISDAKQMI--- 62

Query: 246 YYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRV-----------DEAIQCYN 294
                    AI  +++A+  DP+  EA   +GNA      +           D A Q + 
Sbjct: 63  -------QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQ 115

Query: 295 QCLSLQPSHPQALTNL 310
           Q +  QP +   L +L
Sbjct: 116 QAVDEQPDNTHYLKSL 131

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158

 Score = 52.5 bits (125), Expect = 4e-08
 Identities = 22/145 (15%), Positives = 44/145 (30%), Gaps = 38/145 (26%)

Query: 240 GNLAS----TYYERGQ-ADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGR--------- 285
           G L S    T ++R    +      +     +P   +     G  L ++ +         
Sbjct: 1   GPLGSMDTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQ 60

Query: 286 -VDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNL 344
            + EAI  + + L + P   +A+  +GN Y  +  L    +  K                
Sbjct: 61  MIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAK---------------- 104

Query: 345 AVIYKQQGNYADAISCYNEVLRIDP 369
                   N+  A   + + +   P
Sbjct: 105 -------HNFDLATQFFQQAVDEQP 122

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158

 Score = 50.9 bits (121), Expect = 1e-07
 Identities = 26/134 (19%), Positives = 47/134 (35%), Gaps = 21/134 (15%)

Query: 103 AWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLM----------KAQGLVQ 152
              +  + + R     +  Q        NPL  D  +  G ++           A+ ++Q
Sbjct: 4   GSMDTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQ 63

Query: 153 EAYSCYLEALRIQPTFAIAWSNLAGLFMESGDL-----------NRALQYYKEAVKLKPT 201
           EA + + EAL I P    A   +   +     L           + A Q++++AV  +P 
Sbjct: 64  EAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123

Query: 202 FPDAYLNLGNVYKA 215
                 +L    KA
Sbjct: 124 NTHYLKSLEMTAKA 137

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158

 Score = 49.4 bits (117), Expect = 4e-07
 Identities = 24/159 (15%), Positives = 43/159 (27%), Gaps = 35/159 (22%)

Query: 272 AYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATL 331
              +       +   ++  Q         P     LT  G + +E               
Sbjct: 4   GSMDTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLE--------------- 48

Query: 332 AVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVT-- 389
                     +    I   +    +AI+ + E L IDP   + +   GN Y     +T  
Sbjct: 49  ---------LSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPD 99

Query: 390 ---------DAIQDYIRAITIRPTMAEAHANLASAYKDS 419
                     A Q + +A+  +P       +L    K  
Sbjct: 100 ETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAP 138

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158

 Score = 46.7 bits (110), Expect = 4e-06
 Identities = 21/106 (19%), Positives = 39/106 (36%), Gaps = 21/106 (19%)

Query: 354 YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGR----------VTDAIQDYIRAITIRP 403
           +           + +PL AD L   G    E+ +          + +AI  +  A+ I P
Sbjct: 18  FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP 77

Query: 404 TMAEAHANLASAYKDSG-----------HVEAAIKSYKQALLLRPD 438
              EA   + +AY               + + A + ++QA+  +PD
Sbjct: 78  KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 59.6 bits (144), Expect = 2e-09
 Identities = 32/157 (20%), Positives = 51/157 (32%), Gaps = 24/157 (15%)

Query: 275 NLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT 334
             GN+L    +++EA+Q Y   +                  +  M      Y    LAV 
Sbjct: 184 MDGNSLFKEEKLEEAMQQYEMAI--------------AYMGDDFMFQLYGKYQDMALAVK 229

Query: 335 TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQD 394
                   N+A    +   Y +AI   N VL  +      L  RG    E+G++  A  D
Sbjct: 230 NPC---HLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDD 286

Query: 395 YIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 431
           + +A    P        L +       +    K+  Q
Sbjct: 287 FRKAQKYAPDDKAIRRELRA-------LAEQEKALYQ 316

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 50.4 bits (120), Expect = 1e-06
 Identities = 19/120 (15%), Positives = 37/120 (30%), Gaps = 17/120 (14%)

Query: 65  RFAECYGNMANAWKEKGDIDLAIRYYLVAI-----------------ELRPNFADAWSNL 107
             A+      N+  ++  ++ A++ Y +AI                            N+
Sbjct: 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNI 236

Query: 108 ASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT 167
           A+  ++  R +EA   C   L        A    G      G +  A   + +A +  P 
Sbjct: 237 AACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD 296

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 46.9 bits (111), Expect = 2e-05
 Identities = 24/139 (17%), Positives = 43/139 (30%), Gaps = 17/139 (12%)

Query: 10  YKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAEC 69
           +K    ++A++     YE             AI Y + D  M     +           C
Sbjct: 190 FKEEKLEEAMQQ----YEM------------AIAY-MGDDFMFQLYGKYQDMALAVKNPC 232

Query: 70  YGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALA 129
           + N+A    +    D AI +  + +        A      A    G+++ A    R+A  
Sbjct: 233 HLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292

Query: 130 LNPLLVDAHSNLGNLMKAQ 148
             P        L  L + +
Sbjct: 293 YAPDDKAIRRELRALAEQE 311

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 46.2 bits (109), Expect = 3e-05
 Identities = 22/147 (14%), Positives = 49/147 (33%), Gaps = 16/147 (10%)

Query: 167 TFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCY 226
             A           +   L  A+Q Y+ A+         Y+    +++  G  Q+  +  
Sbjct: 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIA--------YMGDDFMFQLYGKYQDMALAV 228

Query: 227 QRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRV 286
           +             N+A+   +  + D AI +    +  + +  +A    G A  ++G++
Sbjct: 229 KNPCHL--------NIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQM 280

Query: 287 DEAIQCYNQCLSLQPSHPQALTNLGNI 313
           D A   + +     P        L  +
Sbjct: 281 DSARDDFRKAQKYAPDDKAIRRELRAL 307

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 56.4 bits (135), Expect = 2e-09
 Identities = 26/142 (18%), Positives = 43/142 (30%), Gaps = 26/142 (18%)

Query: 195 AVKLKPTFPDAYLNLGNVYKAL--GMPQEAIMCYQRAVQTRP-------------NAIAF 239
            +K       AYL L +  + L  G   EA    +RA++                +A   
Sbjct: 1   GMKPLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCH 60

Query: 240 GNLASTYYERGQADMAILYYKQAIGCDPRFLE-----------AYNNLGNALKDVGRVDE 288
             LA         D A+    +A+    R  E           A  +   AL  +GR  E
Sbjct: 61  AGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAE 120

Query: 289 AIQCYNQCLSLQPSHPQALTNL 310
           A+  + + + +           
Sbjct: 121 AMPEFKKVVEMIEERKGETPGK 142

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 51.8 bits (123), Expect = 8e-08
 Identities = 20/160 (12%), Positives = 46/160 (28%), Gaps = 35/160 (21%)

Query: 271 EAYNNLGNALKDV--GRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYK 328
            AY  L +A + +  G  DEA     + + +  + P                P  A  + 
Sbjct: 10  GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMP----------------PEEAFDHA 53

Query: 329 ATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAAD-----------GLVN 377
              A           LA       ++ +A+   ++ L       +            + +
Sbjct: 54  GFDAF------CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYS 107

Query: 378 RGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYK 417
           R      +GR  +A+ ++ + + +               +
Sbjct: 108 RALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMME 147

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 46.4 bits (109), Expect = 6e-06
 Identities = 12/113 (10%), Positives = 28/113 (24%), Gaps = 23/113 (20%)

Query: 350 QQGNYADAISCYNEVLRIDPLAADG------------LVNRGNTYKEIGRVTDAIQDYIR 397
             G Y +A +     + I                             +    +A+    +
Sbjct: 23  VAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADK 82

Query: 398 AITIRPTMAEAHA-----------NLASAYKDSGHVEAAIKSYKQALLLRPDF 439
           A+       E +            + A A    G    A+  +K+ + +  + 
Sbjct: 83  ALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 46.0 bits (108), Expect = 8e-06
 Identities = 17/141 (12%), Positives = 36/141 (25%), Gaps = 25/141 (17%)

Query: 63  EPRFAECYGNMANAWK--EKGDIDLAIRYYLVAIELRPNFAD------------AWSNLA 108
                  Y  +++A +    G+ D A      A+E+                    + LA
Sbjct: 5   LKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLA 64

Query: 109 SAYMRKGRLNEAAQCCRQALALNPLLVDAHS-----------NLGNLMKAQGLVQEAYSC 157
            A       +EA     +AL       + +            +    +   G   EA   
Sbjct: 65  EALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPE 124

Query: 158 YLEALRIQPTFAIAWSNLAGL 178
           + + + +             +
Sbjct: 125 FKKVVEMIEERKGETPGKERM 145

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 45.3 bits (106), Expect = 1e-05
 Identities = 25/158 (15%), Positives = 45/158 (28%), Gaps = 33/158 (20%)

Query: 1   MHMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEAL 60
           + ++ A +   +G Y +A  +     E +                           EEA 
Sbjct: 13  LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPP----------------------EEAF 50

Query: 61  RLEPRFAECYGNMANAWKEKG-------DIDLAIRYYLVAIELRPNFADAWS----NLAS 109
                 A C+  +A A              D A+ Y+    EL  +    W     + A 
Sbjct: 51  DHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRAL 110

Query: 110 AYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKA 147
           A    GR  EA    ++ + +             +M+ 
Sbjct: 111 ALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEV 148

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212

 Score = 56.5 bits (137), Expect = 5e-09
 Identities = 34/200 (17%), Positives = 58/200 (29%), Gaps = 25/200 (12%)

Query: 169 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQ---EAIMC 225
             A   LA  ++ SGD  +A  + ++A        DA   L  +           +A   
Sbjct: 18  RRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--DGDALALLAQLKIRNPQQADYPQARQL 75

Query: 226 YQRAVQTRPNAIAFGNLASTYYERGQA-----DMAILYYKQAI--GCDPRFLEAYNNLGN 278
            ++AV+   +      LA       QA       AI   + A         ++A   LG 
Sbjct: 76  AEKAVE-AGSKSGEIVLA-RVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGL 133

Query: 279 ALKDVGR-----VDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKA---- 329
                G        +A + +    S       A    G ++ +        +  KA    
Sbjct: 134 IYAS-GVHGPEDDVKASEYFKGS-SSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWL 191

Query: 330 TLAVTTGLSAPFNNLAVIYK 349
            ++   G          I K
Sbjct: 192 NVSCLEGFDTGCEEFDRISK 211

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 32/214 (14%), Positives = 66/214 (30%), Gaps = 33/214 (15%)

Query: 86  AIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLM 145
               Y    E       A   LA  ++  G   +A    ++A A      DA + L   +
Sbjct: 5   PGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--DGDALALLA-QL 59

Query: 146 KAQGLV----QEAYSCYLEALRIQPTFAIAWSNLAGLFMESG-----DLNRALQYYKEAV 196
           K +        +A     +A  ++         LA +   +      D+  A+   ++A 
Sbjct: 60  KIRNPQQADYPQARQLAEKA--VEAGSKSGEIVLARVL-VNRQAGATDVAHAITLLQDAA 116

Query: 197 K--LKPTFPDAYLNLGNVY-KALGMPQ---EAIMCYQRAVQTRPNAIAFGNLASTYYERG 250
           +        DA + LG +Y   +  P+   +A   ++ +        A        +++G
Sbjct: 117 RDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAG-MMFQQG 175

Query: 251 Q-------ADMAILYYKQAIGCDPRFLEAYNNLG 277
           +          A+ +   +  C   F        
Sbjct: 176 EKGFIEPNKQKALHWLNVS--CLEGFDTGCEEFD 207

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176

 Score = 54.2 bits (130), Expect = 1e-08
 Identities = 17/137 (12%), Positives = 42/137 (30%), Gaps = 2/137 (1%)

Query: 101 ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLE 160
            +      S  +++G   +A    +          D      + +      + A    L 
Sbjct: 6   DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQE-LLA 64

Query: 161 ALRIQPTFAIAWSNLAGL-FMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMP 219
            + ++       S +A L   +    +  L+  ++ +   P   +    L   Y  +G  
Sbjct: 65  TIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRD 124

Query: 220 QEAIMCYQRAVQTRPNA 236
           +EA+      ++    A
Sbjct: 125 EEALELLWNILKVNLGA 141

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176

 Score = 53.0 bits (127), Expect = 4e-08
 Identities = 19/136 (13%), Positives = 39/136 (28%)

Query: 241 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300
              S   ++G+   A+   +          +      + L +  + + A +         
Sbjct: 11  KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY 70

Query: 301 PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISC 360
             +            +           +  LA           LAV Y Q G   +A+  
Sbjct: 71  QDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALEL 130

Query: 361 YNEVLRIDPLAADGLV 376
              +L+++  A DG V
Sbjct: 131 LWNILKVNLGAQDGEV 146

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176

 Score = 51.1 bits (122), Expect = 2e-07
 Identities = 18/141 (12%), Positives = 37/141 (26%)

Query: 29  NPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIR 88
           N    + LL   +   Q  ++   +   +          +     A+   E    +LA  
Sbjct: 2   NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQE 61

Query: 89  YYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQ 148
                     + +           ++   +   +   Q LA NP   +    L       
Sbjct: 62  LLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQV 121

Query: 149 GLVQEAYSCYLEALRIQPTFA 169
           G  +EA       L++     
Sbjct: 122 GRDEEALELLWNILKVNLGAQ 142

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176

 Score = 43.8 bits (103), Expect = 5e-05
 Identities = 18/166 (10%), Positives = 42/166 (25%), Gaps = 3/166 (1%)

Query: 131 NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQ 190
           N    +      + +  QG   +A +          +        A   +E+     A +
Sbjct: 2   NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQE 61

Query: 191 YYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYER 249
                           L               +   ++ +   P N      LA  Y + 
Sbjct: 62  LLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQV 121

Query: 250 GQADMAILYYKQAIGCDPRFLE--AYNNLGNALKDVGRVDEAIQCY 293
           G+ + A+      +  +    +        + L  +G+ +     Y
Sbjct: 122 GRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 55.8 bits (135), Expect = 4e-08
 Identities = 20/96 (20%), Positives = 39/96 (40%)

Query: 140 NLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK 199
              N        + A   Y +A+ + P+ AI + N +  ++ +     AL     A++L 
Sbjct: 11  TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD 70

Query: 200 PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
             +   Y        ALG  + A+  Y+  V+ +P+
Sbjct: 71  KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH 106

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 55.1 bits (133), Expect = 7e-08
 Identities = 26/101 (25%), Positives = 45/101 (44%)

Query: 67  AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQ 126
           AE     AN + +  D + AI++Y  AIEL P+ A  + N + AY+R      A     +
Sbjct: 6   AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 65

Query: 127 ALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT 167
           A+ L+   +  +        A G  + A   Y   ++++P 
Sbjct: 66  AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH 106

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 54.7 bits (132), Expect = 8e-08
 Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 9/119 (7%)

Query: 193 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQ 251
           K A +LK           N Y      + AI  Y +A++  P NAI +GN +  Y     
Sbjct: 4   KRAEELK--------TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC 55

Query: 252 ADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNL 310
              A+    +AI  D ++++ Y     +   +G+   A++ Y   + ++P    A    
Sbjct: 56  YGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKY 114

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 27/136 (19%), Positives = 51/136 (37%), Gaps = 24/136 (17%)

Query: 345 AVIYKQQGN-------YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIR 397
           A   K Q N       Y +AI  Y++ + ++P  A    NR   Y        A+ D  R
Sbjct: 6   AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 65

Query: 398 AITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWE 457
           AI +     + +   A++    G   AA++ Y+  + ++P   +A               
Sbjct: 66  AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDA--------------- 110

Query: 458 DRDRMFSEVEGIIRRQ 473
                + E   I++++
Sbjct: 111 --KMKYQECNKIVKQK 124

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 49.3 bits (118), Expect = 4e-06
 Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 6/95 (6%)

Query: 169 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQR 228
           A      A  + ++ D   A+++Y +A++L P+    Y N    Y        A+    R
Sbjct: 6   AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 65

Query: 229 AVQTRPNAIAFGNLASTYYERGQADMAILYYKQAI 263
           A++              YY R  ++MA+  ++ A+
Sbjct: 66  AIELDK------KYIKGYYRRAASNMALGKFRAAL 94

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 19/113 (16%), Positives = 41/113 (36%)

Query: 305 QALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEV 364
           + L    N Y +      A  +Y   + +    +  + N ++ Y +   Y  A+      
Sbjct: 7   EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 66

Query: 365 LRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYK 417
           + +D     G   R  +   +G+   A++DY   + ++P   +A        K
Sbjct: 67  IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 119

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 25/105 (23%), Positives = 41/105 (39%)

Query: 43  YYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFAD 102
           Y++  DY+  I    +A+ L P  A  YGN + A+        A+     AIEL   +  
Sbjct: 16  YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK 75

Query: 103 AWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKA 147
            +   A++ M  G+   A +     + + P   DA        K 
Sbjct: 76  GYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI 120

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 55.5 bits (133), Expect = 5e-08
 Identities = 28/178 (15%), Positives = 56/178 (31%), Gaps = 26/178 (14%)

Query: 254 MAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNI 313
            A   ++                G      G+  +A+  Y + +S               
Sbjct: 252 KAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVS--------------- 296

Query: 314 YMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAAD 373
           ++E      +    KA+ +        F NLA+ Y +   Y  A+ C ++ L +D     
Sbjct: 297 WLEM-EYGLSEKESKASESFLLAA---FLNLAMCYLKLREYTKAVECCDKALGLDSANEK 352

Query: 374 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 431
           GL  RG     +     A  D+ + + + P    A   ++         +   K + +
Sbjct: 353 GLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISM-------CQKKAKEHNE 403

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 48.9 bits (116), Expect = 5e-06
 Identities = 21/138 (15%), Positives = 42/138 (30%), Gaps = 15/138 (10%)

Query: 45  QLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIEL---RPNFA 101
            L  ++      E   + +   A         + + G    A+  Y   +         +
Sbjct: 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLS 305

Query: 102 D------------AWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQG 149
           +            A+ NLA  Y++     +A +CC +AL L+          G       
Sbjct: 306 EKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMN 365

Query: 150 LVQEAYSCYLEALRIQPT 167
             + A   + + L + P 
Sbjct: 366 EFESAKGDFEKVLEVNPQ 383

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 48.1 bits (114), Expect = 8e-06
 Identities = 21/148 (14%), Positives = 42/148 (28%), Gaps = 19/148 (12%)

Query: 1   MHMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEAL 60
           +        +K G Y QA+      Y +             + +   +Y +     +E+ 
Sbjct: 270 IVKEKGTVYFKGGKYMQAVIQ----YGK------------IVSWLEMEYGLS---EKESK 310

Query: 61  RLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEA 120
             E      + N+A  + +  +   A+     A+ L             A +       A
Sbjct: 311 ASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESA 370

Query: 121 AQCCRQALALNPLLVDAHSNLGNLMKAQ 148
                + L +NP    A   +    K  
Sbjct: 371 KGDFEKVLEVNPQNKAARLQISMCQKKA 398

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 45.4 bits (107), Expect = 6e-05
 Identities = 24/128 (18%), Positives = 42/128 (32%), Gaps = 16/128 (12%)

Query: 199 KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAV-------------QTRPNAI---AFGNL 242
           K          G VY   G   +A++ Y + V                  +    AF NL
Sbjct: 264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNL 323

Query: 243 ASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS 302
           A  Y +  +   A+    +A+G D    +     G A   +   + A   + + L + P 
Sbjct: 324 AMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 383

Query: 303 HPQALTNL 310
           +  A   +
Sbjct: 384 NKAARLQI 391

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Length = 497

 Score = 54.2 bits (129), Expect = 1e-07
 Identities = 24/153 (15%), Positives = 55/153 (35%), Gaps = 9/153 (5%)

Query: 83  IDLAIRYYLVAIE-------LRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLV 135
           ++ A  +Y   ++       +        S L     ++   +   +    + +   +  
Sbjct: 95  LEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--ICQ 152

Query: 136 DAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEA 195
               +LG++ + +    +A S Y  A ++ P+    ++ LA L    GD    + YY  +
Sbjct: 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRS 212

Query: 196 VKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQR 228
           + +K  FP A  NL          ++ +     
Sbjct: 213 IAVKFPFPAASTNLQKALSKALESRDEVKTKWG 245

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Length = 497

 Score = 49.2 bits (116), Expect = 5e-06
 Identities = 35/229 (15%), Positives = 78/229 (34%), Gaps = 25/229 (10%)

Query: 258 YYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAI--QCYNQCLSLQPSHPQALTNLGNIYM 315
            Y++ +  D  +                V++ +    +   ++      +   N     +
Sbjct: 39  LYQKMLVTDLEYALDKK-----------VEQDLWNHAFKNQITTLQGQAKNRANPNRSEV 87

Query: 316 EWNM---LPAAASYYKATLAVTT---GLSAP----FNNLAVIYKQQGNYADAISCYNEVL 365
           + N+   L AA+ +Y   L        +  P     + L +I  +Q + +  +   +   
Sbjct: 88  QANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSC 147

Query: 366 RIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAA 425
               +    LV+ G+  +   + + A   Y  A  + P+  + +  LA      G     
Sbjct: 148 SY--ICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTT 205

Query: 426 IKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQV 474
           I  Y +++ ++  FP A+ NL   L       D  +    V   I+  +
Sbjct: 206 IFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVKTKWGVSDFIKAFI 254

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Length = 497

 Score = 48.8 bits (115), Expect = 5e-06
 Identities = 23/127 (18%), Positives = 35/127 (27%), Gaps = 1/127 (0%)

Query: 189 LQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYE 248
           LQ       +          LG +          +     +           +L      
Sbjct: 106 LQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLV-HLGDIARY 164

Query: 249 RGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALT 308
           R Q   A  YY+ A    P   + YN L       G     I  Y + ++++   P A T
Sbjct: 165 RNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAAST 224

Query: 309 NLGNIYM 315
           NL     
Sbjct: 225 NLQKALS 231

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Length = 497

 Score = 47.7 bits (112), Expect = 2e-05
 Identities = 41/251 (16%), Positives = 74/251 (29%), Gaps = 45/251 (17%)

Query: 239 FGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLS 298
           F   AS +Y +   ++  ++       D       + LG            ++  +   S
Sbjct: 94  FLEAASGFYTQLLQELCTVF-----NVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS 148

Query: 299 LQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAI 358
               H   L +LG+I    N    A SYY+    +      P+N LA++   +G++   I
Sbjct: 149 YICQH--CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTI 206

Query: 359 SCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKD 418
                                               Y R+I ++     A  NL  A   
Sbjct: 207 FY----------------------------------YCRSIAVKFPFPAASTNLQKALSK 232

Query: 419 SGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSV 478
           +      +K+         DF +A       +    S E    +  ++E   +  +    
Sbjct: 233 ALESRDEVKTKWG----VSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKELLFQKA 288

Query: 479 LPSVQPFHAIA 489
             S Q  H   
Sbjct: 289 FNSQQLVHVTV 299

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Length = 497

 Score = 46.5 bits (109), Expect = 3e-05
 Identities = 33/221 (14%), Positives = 66/221 (29%), Gaps = 12/221 (5%)

Query: 15  YKQALEHSNSVYERNPLRTDNLLLLGAIY-YQLHDYDMCIARNEEALRLEPRFAECYGNM 73
           Y Q L+   +V+  +         LG I   Q H   +   ++     +        G++
Sbjct: 102 YTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDI 161

Query: 74  ANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPL 133
           A   + +     A  YY  A +L P+    ++ LA     KG          +++A+   
Sbjct: 162 A---RYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP 218

Query: 134 LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF--AIAWSNLAGLFMESGDLNRALQY 191
              A +NL   +      ++              F        L+    +   L   L+ 
Sbjct: 219 FPAASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEE 278

Query: 192 YKEAVKLKPTFPD------AYLNLGNVYKALGMPQEAIMCY 226
             + +  +  F          +NL  ++       E     
Sbjct: 279 QFKELLFQKAFNSQQLVHVTVINLFQLHHLRDFSNETEQHT 319

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Length = 1630

 Score = 52.7 bits (126), Expect = 6e-07
 Identities = 74/336 (22%), Positives = 122/336 (36%), Gaps = 52/336 (15%)

Query: 14   SYKQALEHSNSVYERNPLRTDNLLLLGAIYY----------QLHDYD------MCIARN- 56
               + +   NSV+  +     NLL+L AI            +L +YD      + I+   
Sbjct: 1006 ELLEKIVLDNSVFSEHR-NLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNEL 1064

Query: 57   -EEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKG 115
             EEA  +  +F      +    +  G++D A  +       R N    WS LA A ++KG
Sbjct: 1065 FEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEF-----AERCNEPAVWSQLAKAQLQKG 1119

Query: 116  RLNEAAQCCRQALALNPL--LVDAHSNLGN-------LMKAQGLVQEAY------SCYLE 160
             + EA     +A   +    +V A +  GN       L  A+   +E+Y          +
Sbjct: 1120 MVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAK 1179

Query: 161  ALRIQP-TFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMP 219
              R+      I   N A +  + GD     + Y  A KL       +  L +    LG  
Sbjct: 1180 TNRLAELEEFINGPNNAHI-QQVGDRCYDEKMYDAA-KLLYNNVSNFGRLASTLVHLGEY 1237

Query: 220  QEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGN 278
            Q A+   ++A  TR    + F  +     +  +  +A +     +      LE    L N
Sbjct: 1238 QAAVDGARKANSTRTWKEVCFACV-----DGKEFRLAQMCGLHIV-VHADELEE---LIN 1288

Query: 279  ALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIY 314
              +D G  +E I      L L+ +H    T L  +Y
Sbjct: 1289 YYQDRGYFEELITMLEAALGLERAHMGMFTELAILY 1324

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Length = 273

 Score = 50.7 bits (121), Expect = 6e-07
 Identities = 22/131 (16%), Positives = 43/131 (32%), Gaps = 3/131 (2%)

Query: 139 SNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL 198
           +   N +  +G +Q+A    +EA++  P  A   S+   L    GD  RA +   +++KL
Sbjct: 2   TQWKNALS-EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60

Query: 199 KPTFPDAYLNLGNVYKALGMPQEAIMCYQRA--VQTRPNAIAFGNLASTYYERGQADMAI 256
            P +      L ++ KA    ++       A  +             +        +   
Sbjct: 61  FPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVS 120

Query: 257 LYYKQAIGCDP 267
               Q      
Sbjct: 121 ELALQIEELRQ 131

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Length = 273

 Score = 44.2 bits (104), Expect = 1e-04
 Identities = 15/67 (22%), Positives = 28/67 (41%)

Query: 386 GRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCN 445
           G++  A++  I AI   P  A   ++        G  E A +   Q++ L P++      
Sbjct: 11  GQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQ 70

Query: 446 LLHTLQC 452
           L H ++ 
Sbjct: 71  LRHLVKA 77

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 50.9 bits (122), Expect = 1e-06
 Identities = 32/162 (19%), Positives = 51/162 (31%), Gaps = 25/162 (15%)

Query: 270 LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKA 329
            E   N+GN        + AI+ Y + L                Y+E +   A  +    
Sbjct: 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLR---------------YVEGSRAAAEDADGAK 267

Query: 330 TLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVT 389
              V         N+     +  ++  A+    E L IDP     L  R   ++ +    
Sbjct: 268 LQPVALSC---VLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYD 324

Query: 390 DAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 431
            A+ D  +A  I P      A L         V+  IK+ K 
Sbjct: 325 QALADLKKAQEIAPEDKAIQAELLK-------VKQKIKAQKD 359

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 48.2 bits (114), Expect = 5e-06
 Identities = 17/163 (10%), Positives = 44/163 (26%), Gaps = 13/163 (7%)

Query: 178 LFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAI 237
                         +++ ++ +       L   +    +   ++ +      +    N  
Sbjct: 97  KVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156

Query: 238 AFGNLASTYYERGQADMAILYYKQAIGC-------DPRFLEAYNNLGNALKDVGRVDEAI 290
               +A+ Y E G     I  ++Q +         +   ++   N   AL    R +E++
Sbjct: 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESL 216

Query: 291 QCYNQCLSLQPSH------PQALTNLGNIYMEWNMLPAAASYY 327
              N+ + +           Q     G    +     A     
Sbjct: 217 YQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDA 259

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 47.5 bits (112), Expect = 8e-06
 Identities = 18/139 (12%), Positives = 46/139 (33%), Gaps = 13/139 (9%)

Query: 138 HSNLGNLMKAQGLVQEAYSCYLEALRIQPT------FAIAWSNLAGLFMESGDLNRALQY 191
              +   +  +   +       + L  Q T           + +A ++ E+G L + +  
Sbjct: 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDL 177

Query: 192 YKEAVKLKPTFPD-------AYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLAS 244
           +++ +K      D          N           +E++    +A++      +   +  
Sbjct: 178 FEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237

Query: 245 TYYERGQADMAILYYKQAI 263
            YY+RG+    + Y +  I
Sbjct: 238 LYYQRGECLRKLEYEEAEI 256

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 45.5 bits (107), Expect = 4e-05
 Identities = 17/149 (11%), Positives = 37/149 (24%), Gaps = 20/149 (13%)

Query: 2   HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDN------LLLLGAIYYQLHDYDMCIAR 55
              +A  + K   Y+  +     +  +     D          +  IY +       I  
Sbjct: 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDL 177

Query: 56  NEEALRL-------EPRFAECYGNMANAWKEKGDIDLAIRYYLVAIEL------RPNFAD 102
            E+ L+        E    +   N A A       + ++     AIE+            
Sbjct: 178 FEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237

Query: 103 AWSNLASAYMRKGRLNEAAQCC-RQALAL 130
            +        +        +   ++A   
Sbjct: 238 LYYQRGECLRKLEYEEAEIEDAYKKASFF 266

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 45.2 bits (106), Expect = 6e-05
 Identities = 17/109 (15%), Positives = 35/109 (32%), Gaps = 14/109 (12%)

Query: 341 FNNLAVIYKQQGNYADAISCYNEVLRI-------DPLAADGLVNRGNTYKEIGRVTDAIQ 393
            N +A IY + G     I  + ++L+        +        N         R  +++ 
Sbjct: 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLY 217

Query: 394 DYIRAITI------RPTMAEAHANLASAYKDSGHVEAAIKSY-KQALLL 435
              +AI I         + + +       +   + EA I+   K+A   
Sbjct: 218 QVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 43.2 bits (101), Expect = 2e-04
 Identities = 25/217 (11%), Positives = 60/217 (27%), Gaps = 21/217 (9%)

Query: 3   MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRL 62
             +A ++     +   +   + +  +   +   ++L     Y+     +     +E    
Sbjct: 50  QGIAAKLQIPIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHP 109

Query: 63  EPR-FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAW------SNLASAYMRKG 115
           E + F +    +A    +K D +  I      +  +    D +      + +A+ Y   G
Sbjct: 110 EFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENG 169

Query: 116 RLNEAAQCCRQALAL-------NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI---- 164
            L +      Q L             V    N    +      +E+     +A+ I    
Sbjct: 170 YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI 229

Query: 165 --QPTFAIAWSNLAGLFMESG-DLNRALQYYKEAVKL 198
                    +        +   +       YK+A   
Sbjct: 230 NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Length = 129

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 7/97 (7%)

Query: 174 NLAGLFMESGDLNRALQYYKEAVKLKPT---FPDAYLNLGNVYKALGMPQEAIMCYQRAV 230
           N+A   +++G  + A Q +   ++L P     P+A   LG  Y A    Q A   ++  V
Sbjct: 7   NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLV 66

Query: 231 QTRPN----AIAFGNLASTYYERGQADMAILYYKQAI 263
              P     A     L  + Y  G+   A    +Q  
Sbjct: 67  SRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVA 103

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Length = 129

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 19/107 (17%), Positives = 35/107 (32%), Gaps = 9/107 (8%)

Query: 343 NLAVIYKQQGNYADAISCYNEVLRI---DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAI 399
           N+A    + G Y DA   +   L +        + L   G +Y        A   +   +
Sbjct: 7   NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLV 66

Query: 400 TIRPT---MAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEAT 443
           +  PT    A     L  +    G    A ++ +Q   +   +P + 
Sbjct: 67  SRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQ---VATQYPGSD 110

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Length = 129

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 4/82 (4%)

Query: 175 LAGLFMESGDLNRALQYYKEAVKLKPT---FPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 231
           L   +  + +   A   +++ V   PT        L LG      G   EA    Q+   
Sbjct: 45  LGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVAT 104

Query: 232 TRPNAIAFGNLASTYYERGQAD 253
             P + A   +A    +  +  
Sbjct: 105 QYPGSDA-ARVAQERLQSIRLG 125

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530

 Score = 44.5 bits (104), Expect = 1e-04
 Identities = 55/428 (12%), Positives = 115/428 (26%), Gaps = 47/428 (10%)

Query: 57  EEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGR 116
           E+ L   P   + +  +     +   ID A + Y   +   P+    W     A ++   
Sbjct: 3   EKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKN 61

Query: 117 LNEAAQCCRQALALNP-------LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFA 169
            ++  +  ++ L            L       G L   +  + +AY   L+ + ++    
Sbjct: 62  YDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSY 121

Query: 170 IAWSNLAGL---------FMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQ 220
             W +             + E+  +    + Y+          +        Y       
Sbjct: 122 QIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW---RDYNKYEEGI 178

Query: 221 EAIMCYQRAVQTRPNAIAFGNLASTYYE--RGQADMAILYYKQAIGCDPRFLEAYNNLGN 278
              +  +       + +    +A  Y    +G    A     Q    + + ++ +     
Sbjct: 179 NIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQ 238

Query: 279 ALKDVGRVDE--------AIQCYNQCLSLQPSHPQA-------LTNLGNIYMEWNMLPAA 323
             K      E         +  Y QCL +   HP         L     +  E   +  A
Sbjct: 239 WEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNA 298

Query: 324 ASYYKATLAVTTGLSAPFN--------NLAVIYKQQGNYADAISCYNEVLRIDPLAAD-G 374
             +      +     +             A   + +  Y    S YN +L I+ +     
Sbjct: 299 KLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLV 358

Query: 375 LVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLAS-AYKDSGHVEAAIKSYKQAL 433
            +      +    +      + +A     T    +   A   Y  S     A K ++  L
Sbjct: 359 YIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGL 418

Query: 434 LLRPDFPE 441
               D PE
Sbjct: 419 KKYGDIPE 426

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493

 Score = 42.2 bits (98), Expect = 6e-04
 Identities = 12/195 (6%), Positives = 42/195 (21%), Gaps = 10/195 (5%)

Query: 142 GNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKP- 200
           G  +  +      +  +   L         +   +   +  G   +A +  +  +++   
Sbjct: 186 GMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDG 245

Query: 201 -----TFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMA 255
                 +                           V ++   +   N  +   ++   ++ 
Sbjct: 246 MFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELF 305

Query: 256 ILYYKQAIG--CDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNI 313
              + +       P        +       G        ++  L   P            
Sbjct: 306 RKLFIELGNEGVGPHVFIYCAFI--EYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLF 363

Query: 314 YMEWNMLPAAASYYK 328
            +       A + +K
Sbjct: 364 LLRIGDEENARALFK 378

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308

 Score = 41.2 bits (96), Expect = 9e-04
 Identities = 35/310 (11%), Positives = 79/310 (25%), Gaps = 60/310 (19%)

Query: 139 SNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL 198
           SN         + +     Y + L +       W               A QY +++ KL
Sbjct: 20  SNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIW-------------YEAAQYLEQSSKL 66

Query: 199 KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYE--RGQADMAI 256
                D          A     EA   Y+RA+ T          A   YE  R + +   
Sbjct: 67  LAEKGDMNN-------AKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVH 119

Query: 257 LYYKQAIGCDPR-FLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM 315
             Y + +  +       Y       +    +      + +      +          +Y+
Sbjct: 120 SIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH-------VYV 172

Query: 316 EWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGL 375
              ++                           Y    + + A   +   L+      + +
Sbjct: 173 TAALM--------------------------EYYCSKDKSVAFKIFELGLKKYGDIPEYV 206

Query: 376 VNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAY----KDSGHVEAAIKSYKQ 431
           +   +    +    +    + R +T      E    + + +     + G + + +K  K+
Sbjct: 207 LAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266

Query: 432 ALLLRPDFPE 441
                 +  E
Sbjct: 267 RFTAFREEYE 276

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	887
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-61
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-60
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-59
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-41
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-41
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-37
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-30
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-10
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-09
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	3e-44
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	3e-38
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	9e-37
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	1e-26
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	1e-04
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	2e-29
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	3e-27
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	9e-27
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	4e-20
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	4e-15
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	4e-14
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	3e-23
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	5e-17
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	2e-15
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	1e-14
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	4e-05
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	5e-05
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	4e-23
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	1e-21
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	4e-21
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	4e-20
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	1e-10
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	8e-09
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	6e-08
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	3e-21
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	3e-17
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	5e-17
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	1e-16
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	4e-15
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	5e-13
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	1e-12
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	1e-11
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	7e-19
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	2e-18
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	2e-17
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	8e-15
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	5e-13
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	2e-07
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	3e-06
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	2e-04
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	4e-04
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	6e-04
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	2e-18
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	8e-18
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	6e-17
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	2e-16
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	6e-16
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	6e-14
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	2e-13
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	4e-13
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	6e-06
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	0.003
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	2e-18
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	3e-18
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	2e-17
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	2e-11
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	4e-18
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	1e-16
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	4e-15
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	2e-14
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	2e-14
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	3e-12
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	1e-09
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	1e-17
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	1e-17
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	2e-13
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	2e-11
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	3e-15
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	2e-12
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	4e-12
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	5e-12
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	2e-11
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	4e-11
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	6e-06
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	3e-04
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	3e-13
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	3e-11
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	3e-09
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	4e-09
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	5e-09
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	1e-08
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	1e-08
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	2e-12
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	2e-11
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	3e-11
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	3e-10
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	3e-09
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	3e-09
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	9e-09
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	2e-06
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	5e-12
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	6e-11
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	2e-09
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	4e-09
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	5e-09
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	9e-09
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	2e-07
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	7e-06
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	5e-11
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	2e-10
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	1e-09
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	2e-08
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	2e-08
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	2e-08
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	5e-08
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	6e-08
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	5e-07
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	8e-07
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	1e-09
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	1e-09
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	3e-09
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	2e-08
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	8e-08
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	6e-07
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	2e-05
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	8e-04
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	2e-09
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	4e-09
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	5e-09
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	3e-08
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	2e-07
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	1e-06
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	5e-06
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	1e-05
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	1e-05
d2onda1	308	a.118.8.7 (A:242-549) Cleavage stimulation factor	5e-09
d2ff4a2	179	a.118.8.3 (A:105-283) Probable regulatory protein	6e-09
d2ff4a2	179	a.118.8.3 (A:105-283) Probable regulatory protein	1e-07
d1tjca_	95	a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni	2e-08
d1tjca_	95	a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni	1e-07
d1tjca_	95	a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni	4e-07
d1tjca_	95	a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni	5e-07
d1tjca_	95	a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni	8e-07
d1tjca_	95	a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni	1e-05
d1tjca_	95	a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni	3e-04
d1tjca_	95	a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni	5e-04
d1tjca_	95	a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni	0.001
d1tjca_	95	a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni	0.002
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	8e-08
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	2e-07
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	2e-07
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	9e-07
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	5e-06
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	1e-05
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	3e-05
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	0.002
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	1e-05
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	2e-05
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	2e-05
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	1e-04
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	4e-04
d1zu2a1	145	a.118.8.1 (A:1-145) Mitochondrial import receptor	8e-04
d1zu2a1	145	a.118.8.1 (A:1-145) Mitochondrial import receptor	0.001
d2pqrb1	124	a.118.8.1 (B:5-128) Mitochondria fission protein F	0.002

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  209 bits (533), Expect = 6e-61
 Identities = 158/385 (41%), Positives = 225/385 (58%), Gaps = 1/385 (0%)

Query: 3   MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRL 62
           M LAH+ Y++G ++ A  H   ++ + P  T  LLLL +I++Q    D     +  A++ 
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

Query: 63  EPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQ 122
            P  AE Y N+ N +KE+G +  AI +Y  A+ L+P+F D + NLA+A +  G +  A Q
Sbjct: 63  NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122

Query: 123 CCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMES 182
               AL  NP L    S+LGNL+KA G ++EA +CYL+A+  QP FA+AWSNL  +F   
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ 182

Query: 183 GDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ-TRPNAIAFGN 241
           G++  A+ ++++AV L P F DAY+NLGNV K   +   A+  Y RA+  +  +A+  GN
Sbjct: 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242

Query: 242 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP 301
           LA  YYE+G  D+AI  Y++AI   P F +AY NL NALK+ G V EA  CYN  L L P
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302

Query: 302 SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCY 361
           +H  +L NL NI  E   +  A   Y+  L V    +A  +NLA + +QQG   +A+  Y
Sbjct: 303 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362

Query: 362 NEVLRIDPLAADGLVNRGNTYKEIG 386
            E +RI P  AD   N GNT KE+ 
Sbjct: 363 KEAIRISPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  208 bits (529), Expect = 2e-60
 Identities = 113/386 (29%), Positives = 181/386 (46%), Gaps = 1/386 (0%)

Query: 36  LLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIE 95
            + L    YQ  D++       +  R EP        +++   +   +D +  +  +AI+
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 96  LRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAY 155
             P  A+A+SNL + Y  +G+L EA +  R AL L P  +D + NL   + A G ++ A 
Sbjct: 62  QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAV 121

Query: 156 SCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKA 215
             Y+ AL+  P      S+L  L    G L  A   Y +A++ +P F  A+ NLG V+ A
Sbjct: 122 QAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA 181

Query: 216 LGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYN 274
            G    AI  +++AV   PN   A+ NL +   E    D A+  Y +A+   P     + 
Sbjct: 182 QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241

Query: 275 NLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT 334
           NL     + G +D AI  Y + + LQP  P A  NL N   E   +  A   Y   L + 
Sbjct: 242 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301

Query: 335 TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQD 394
              +   NNLA I ++QGN  +A+  Y + L + P  A    N  +  ++ G++ +A+  
Sbjct: 302 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 361

Query: 395 YIRAITIRPTMAEAHANLASAYKDSG 420
           Y  AI I PT A+A++N+ +  K+  
Sbjct: 362 YKEAIRISPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  204 bits (519), Expect = 6e-59
 Identities = 134/381 (35%), Positives = 216/381 (56%), Gaps = 1/381 (0%)

Query: 72  NMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALN 131
            +A+   + GD + A R+ +      P+       L+S + +  RL+ +A     A+  N
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 132 PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQY 191
           PLL +A+SNLGN+ K +G +QEA   Y  ALR++P F   + NLA   + +GD+  A+Q 
Sbjct: 64  PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA 123

Query: 192 YKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERG 250
           Y  A++  P       +LGN+ KALG  +EA  CY +A++T+PN A+A+ NL   +  +G
Sbjct: 124 YVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 183

Query: 251 QADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNL 310
           +  +AI ++++A+  DP FL+AY NLGN LK+    D A+  Y + LSL P+H     NL
Sbjct: 184 EIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNL 243

Query: 311 GNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPL 370
             +Y E  ++  A   Y+  + +       + NLA   K++G+ A+A  CYN  LR+ P 
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT 303

Query: 371 AADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYK 430
            AD L N  N  +E G + +A++ Y +A+ + P  A AH+NLAS  +  G ++ A+  YK
Sbjct: 304 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 363

Query: 431 QALLLRPDFPEATCNLLHTLQ 451
           +A+ + P F +A  N+ +TL+
Sbjct: 364 EAIRISPTFADAYSNMGNTLK 384

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  155 bits (391), Expect = 1e-41
 Identities = 84/217 (38%), Positives = 116/217 (53%)

Query: 1   MHMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEAL 60
               L       G    A+ H       +P   D  + LG +  +   +D  +A    AL
Sbjct: 171 AWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRAL 230

Query: 61  RLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEA 120
            L P  A  +GN+A  + E+G IDLAI  Y  AIEL+P+F DA+ NLA+A   KG + EA
Sbjct: 231 SLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEA 290

Query: 121 AQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFM 180
             C   AL L P   D+ +NL N+ + QG ++EA   Y +AL + P FA A SNLA +  
Sbjct: 291 EDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ 350

Query: 181 ESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG 217
           + G L  AL +YKEA+++ PTF DAY N+GN  K + 
Sbjct: 351 QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  154 bits (389), Expect = 2e-41
 Identities = 82/251 (32%), Positives = 129/251 (51%), Gaps = 1/251 (0%)

Query: 1   MHMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEAL 60
           +   L + +   G  ++A        E  P        LG ++    +  + I   E+A+
Sbjct: 137 VRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV 196

Query: 61  RLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEA 120
            L+P F + Y N+ N  KE    D A+  YL A+ L PN A    NLA  Y  +G ++ A
Sbjct: 197 TLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLA 256

Query: 121 AQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFM 180
               R+A+ L P   DA+ NL N +K +G V EA  CY  ALR+ PT A + +NLA +  
Sbjct: 257 IDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR 316

Query: 181 ESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAF 239
           E G++  A++ Y++A+++ P F  A+ NL +V +  G  QEA+M Y+ A++  P  A A+
Sbjct: 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY 376

Query: 240 GNLASTYYERG 250
            N+ +T  E  
Sbjct: 377 SNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  143 bits (361), Expect = 1e-37
 Identities = 87/328 (26%), Positives = 149/328 (45%), Gaps = 1/328 (0%)

Query: 140 NLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK 199
            L +     G  + A    ++  R +P        L+ +  +   L+R+  +   A+K  
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 200 PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAIL-Y 258
           P   +AY NLGNVYK  G  QEAI  Y+ A++ +P+ I      +            +  
Sbjct: 64  PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA 123

Query: 259 YKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWN 318
           Y  A+  +P      ++LGN LK +GR++EA  CY + +  QP+   A +NLG ++    
Sbjct: 124 YVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 183

Query: 319 MLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNR 378
            +  A  +++  + +       + NL  + K+   +  A++ Y   L + P  A    N 
Sbjct: 184 EIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNL 243

Query: 379 GNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 438
              Y E G +  AI  Y RAI ++P   +A+ NLA+A K+ G V  A   Y  AL L P 
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT 303

Query: 439 FPEATCNLLHTLQCVCSWEDRDRMFSEV 466
             ++  NL +  +   + E+  R++ + 
Sbjct: 304 HADSLNNLANIKREQGNIEEAVRLYRKA 331

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (304), Expect = 3e-30
 Identities = 62/183 (33%), Positives = 97/183 (53%)

Query: 2   HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
           ++ L + + ++  + +A+         +P        L  +YY+    D+ I     A+ 
Sbjct: 206 YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE 265

Query: 62  LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA 121
           L+P F + Y N+ANA KEKG +  A   Y  A+ L P  AD+ +NLA+    +G + EA 
Sbjct: 266 LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV 325

Query: 122 QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFME 181
           +  R+AL + P    AHSNL ++++ QG +QEA   Y EA+RI PTFA A+SN+     E
Sbjct: 326 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385

Query: 182 SGD 184
             D
Sbjct: 386 MQD 388

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.4 bits (150), Expect = 1e-10
 Identities = 12/90 (13%), Positives = 29/90 (32%)

Query: 374 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQAL 433
           G +   +   + G    A +  ++     P        L+S +     ++ +      A+
Sbjct: 1   GPMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI 60

Query: 434 LLRPDFPEATCNLLHTLQCVCSWEDRDRMF 463
              P   EA  NL +  +     ++    +
Sbjct: 61  KQNPLLAEAYSNLGNVYKERGQLQEAIEHY 90

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (136), Expect = 4e-09
 Identities = 21/82 (25%), Positives = 34/82 (41%)

Query: 1   MHMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEAL 60
               LA+   + G+ ++A+       E  P        L ++  Q       +   +EA+
Sbjct: 307 SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366

Query: 61  RLEPRFAECYGNMANAWKEKGD 82
           R+ P FA+ Y NM N  KE  D
Sbjct: 367 RISPTFADAYSNMGNTLKEMQD 388

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  165 bits (418), Expect = 3e-44
 Identities = 40/287 (13%), Positives = 78/287 (27%), Gaps = 21/287 (7%)

Query: 86  AIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLM 145
           + +Y   A  L+ +  D+    A  +  +  L +     ++ L  +           +L 
Sbjct: 5   SAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW 61

Query: 146 KAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAV-------KL 198
                   A+   +  L+ Q       +        S  L  A  +Y + +        +
Sbjct: 62  N------HAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNV 115

Query: 199 KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILY 258
                     LG +          +     +           +L      R Q   A  Y
Sbjct: 116 DLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC-QHCLVHLGDIARYRNQTSQAESY 174

Query: 259 YKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWN 318
           Y+ A    P   + YN L       G     I  Y + ++++   P A TNL       +
Sbjct: 175 YRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL---S 231

Query: 319 MLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVL 365
               +    K    V+  + A F           +         ++ 
Sbjct: 232 KALESRDEVKTKWGVSDFIKA-FIKFHGHVYLSKSLEKLSPLREKLE 277

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  147 bits (372), Expect = 3e-38
 Identities = 31/240 (12%), Positives = 65/240 (27%), Gaps = 11/240 (4%)

Query: 57  EEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGR 116
            +A  L+    +     A  W  +  +      Y   +     +A          +    
Sbjct: 10  RQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVE--QDLWNHA 64

Query: 117 LNEAAQCCRQALALNPLLVDAHSN---LGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWS 173
                   +           +         L  A G   +          +     +  S
Sbjct: 65  FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSS 124

Query: 174 NLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR 233
            L  +  +    +  ++    +           ++LG++ +      +A   Y+ A Q  
Sbjct: 125 QLGIISNKQTHTSAIVKPQSSS--CSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLV 182

Query: 234 PN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQC 292
           P+    +  LA     +G     I YY ++I     F  A  NL  AL       + ++ 
Sbjct: 183 PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVKT 242

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  143 bits (361), Expect = 9e-37
 Identities = 53/372 (14%), Positives = 100/372 (26%), Gaps = 75/372 (20%)

Query: 118 NEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAG 177
            ++AQ  RQA  L   + D+      +  ++  +Q+ Y    + L     +A+       
Sbjct: 3   LQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQ---KMLVTDLEYALDKKVEQD 59

Query: 178 LFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAI 237
           L+                         A+ N     +     +      +          
Sbjct: 60  LWNH-----------------------AFKNQITTLQGQAKNRANPNRSEVQANLSLFL- 95

Query: 238 AFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCL 297
                AS +Y +      +         D       + LG            ++  +   
Sbjct: 96  ---EAASGFYTQ-----LLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSS-- 145

Query: 298 SLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADA 357
           S        L +LG+I    N    A SYY+    +      P+N LA++   +G++   
Sbjct: 146 SCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTT 205

Query: 358 ISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYK 417
           I  Y                                   R+I ++     A  NL  A  
Sbjct: 206 IFYYC----------------------------------RSIAVKFPFPAASTNLQKALS 231

Query: 418 DSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMS 477
            +      +K+         DF +A       +    S E    +  ++E   +  +   
Sbjct: 232 KALESRDEVKT----KWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKELLFQK 287

Query: 478 VLPSVQPFHAIA 489
              S Q  H   
Sbjct: 288 AFNSQQLVHVTV 299

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (281), Expect = 1e-26
 Identities = 34/272 (12%), Positives = 78/272 (28%), Gaps = 43/272 (15%)

Query: 17  QALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAE-------- 68
           Q+ ++           TD+ L    ++             ++ L  +  +A         
Sbjct: 4   QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLY---QKMLVTDLEYALDKKVEQDL 60

Query: 69  ---CYGNMANAWKE-----------------KGDIDLAIRYYLVAIE-------LRPNFA 101
               + N     +                     ++ A  +Y   ++       +     
Sbjct: 61  WNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCR 120

Query: 102 DAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEA 161
              S L     ++   +   +    + +          +LG++ + +    +A S Y  A
Sbjct: 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHA 178

Query: 162 LRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQE 221
            ++ P+    ++ LA L    GD    + YY  ++ +K  FP A  NL          ++
Sbjct: 179 AQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRD 238

Query: 222 AIMCYQRAVQTRPNAIAFGNLASTYYERGQAD 253
            +   +          AF       Y     +
Sbjct: 239 EV---KTKWGVSDFIKAFIKFHGHVYLSKSLE 267

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 14/139 (10%), Positives = 35/139 (25%), Gaps = 4/139 (2%)

Query: 1   MHMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEAL 60
             + L           QA  +     +  P        L  +     D+   I     ++
Sbjct: 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSI 213

Query: 61  RLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEA 120
            ++  F     N+  A  +  +    ++          +F  A+            L + 
Sbjct: 214 AVKFPFPAASTNLQKALSKALESRDEVK----TKWGVSDFIKAFIKFHGHVYLSKSLEKL 269

Query: 121 AQCCRQALALNPLLVDAHS 139
           +    +       L+   +
Sbjct: 270 SPLREKLEEQFKELLFQKA 288

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  118 bits (295), Expect = 2e-29
 Identities = 26/312 (8%), Positives = 76/312 (24%), Gaps = 18/312 (5%)

Query: 119 EAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGL 178
           +A     +      L   A   +    +A  L +       + L   P FA  W+    +
Sbjct: 13  QAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREV 72

Query: 179 FM----------ESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG--MPQEAIMCY 226
                        +  +   L + +  +++ P     + +   +   L        +   
Sbjct: 73  LQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELC 132

Query: 227 QRAVQTRPN--AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVG 284
            R ++                          + +    I  +     +++     L  + 
Sbjct: 133 ARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH 192

Query: 285 RVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNL 344
              ++        ++     + + N             +A +Y   L             
Sbjct: 193 PQPDSGPQGRLPENVLLKELELVQNAFFTDPN----DQSAWFYHRWLLGRAEPLFRCELS 248

Query: 345 AVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT 404
                   +  ++     E+   +      ++        +    + +Q +     + P 
Sbjct: 249 VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 308

Query: 405 MAEAHANLASAY 416
            A    +L S +
Sbjct: 309 RAAYLDDLRSKF 320

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  111 bits (277), Expect = 3e-27
 Identities = 26/343 (7%), Positives = 70/343 (20%), Gaps = 51/343 (14%)

Query: 53  IARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAW-------- 104
             R E   +L+  +      +    +     +  +      +   P+FA  W        
Sbjct: 16  AKRLEREQKLKL-YQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQ 74

Query: 105 --SNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQG--LVQEAYSCYLE 160
                 S       +          L +NP       +   L+                 
Sbjct: 75  HLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCAR 134

Query: 161 ALRIQPTFAIAWSNLAG-LFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMP 219
            L         W          +      L +    +    +   ++     +   L   
Sbjct: 135 FLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQ 194

Query: 220 QEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNA 279
            ++    +         +    L    +     D +  +Y + +      L         
Sbjct: 195 PDSGPQGRLPENVLLKEL---ELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEK 251

Query: 280 LKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSA 339
              +    E+ +   +           +  L                             
Sbjct: 252 STVLQSELESCKELQELEPENKWCLLTIILLMRALDP----------------------- 288

Query: 340 PFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTY 382
                           + +  ++ +  +DP+ A  L +  + +
Sbjct: 289 -----------LLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 320

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  110 bits (274), Expect = 9e-27
 Identities = 28/278 (10%), Positives = 70/278 (25%), Gaps = 18/278 (6%)

Query: 57  EEALRLEPRFAECY----------GNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSN 106
            + L   P FA  +              +  +    +   + +    + + P     W +
Sbjct: 53  SQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHH 112

Query: 107 LASAYMRKGRLN--EAAQCCRQALALNPLLVDAHSNL-GNLMKAQGLVQEAYSCYLEALR 163
                 R    N     + C + L  +               +A     E  +     + 
Sbjct: 113 RCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT 172

Query: 164 IQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAI 223
              +   +W   + L  +      +    +    +     +   N            ++ 
Sbjct: 173 RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF----TDPNDQSA 228

Query: 224 MCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKD 282
             Y R +  R                      +    ++    +   L     L  AL  
Sbjct: 229 WFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDP 288

Query: 283 VGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNML 320
           +    E +Q ++   ++ P     L +L + ++  N +
Sbjct: 289 LLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSV 326

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 90.4 bits (223), Expect = 4e-20
 Identities = 16/214 (7%), Positives = 42/214 (19%), Gaps = 5/214 (2%)

Query: 1   MHMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLL-GAIYYQLHDYDMCIARNEEA 59
            H           ++ + LE      E +                        +A  +  
Sbjct: 111 HHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSL 170

Query: 60  LRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNE 119
           +         +   +    +      +     +   +     +   N           ++
Sbjct: 171 ITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNA----FFTDPNDQ 226

Query: 120 AAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLF 179
           +A    + L      +                 E+     E         +    L    
Sbjct: 227 SAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRAL 286

Query: 180 MESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVY 213
                    LQY+     + P       +L + +
Sbjct: 287 DPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 320

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 75.4 bits (184), Expect = 4e-15
 Identities = 19/188 (10%), Positives = 46/188 (24%), Gaps = 4/188 (2%)

Query: 1   MHMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEAL 60
                      + +  + L  ++S+  RN     +      +  QLH       +     
Sbjct: 146 WDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPE 205

Query: 61  RLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEA 120
            +  +  E               D +  +Y   +  R                     E+
Sbjct: 206 NVLLKELELV----QNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELES 261

Query: 121 AQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFM 180
            +  ++    N   +     L   +      +E    +     + P  A    +L   F+
Sbjct: 262 CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 321

Query: 181 ESGDLNRA 188
               + + 
Sbjct: 322 LENSVLKM 329

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 72.3 bits (176), Expect = 4e-14
 Identities = 27/271 (9%), Positives = 66/271 (24%), Gaps = 17/271 (6%)

Query: 210 GNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRF 269
           G +       Q      +R  + +    A   +          +  +    Q +G +P F
Sbjct: 3   GRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDF 62

Query: 270 LEAYNNLGNALK----------DVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNM 319
              +N     L+              V   +     CL + P       +   +      
Sbjct: 63  ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE 122

Query: 320 L---PAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLV 376
                      +   A             V  +     A+ ++  + ++  +        
Sbjct: 123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH 182

Query: 377 NRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLR 436
            R     ++    D+         +   +      L      +   + +   Y + LL R
Sbjct: 183 YRSCLLPQLHPQPDSGPQGR----LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGR 238

Query: 437 PDFPEATCNLLHTLQCVCSWEDRDRMFSEVE 467
            +        +     + S  +  +   E+E
Sbjct: 239 AEPLFRCELSVEKSTVLQSELESCKELQELE 269

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.3 bits (246), Expect = 3e-23
 Identities = 45/237 (18%), Positives = 81/237 (34%), Gaps = 11/237 (4%)

Query: 90  YLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKA-Q 148
            +V I     F D +    +   R  R   A +  R A+ LN            L+K+ Q
Sbjct: 32  PVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQ 91

Query: 149 GLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLN 208
             + E  +     +  QP     W +   L     D ++ L++  + +        A+ +
Sbjct: 92  KDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQH 151

Query: 209 LGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADM------AILYYKQ 261
              V +   +    +    + ++    N   +             +        + Y  +
Sbjct: 152 RQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLE 211

Query: 262 AIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH--PQALTNLGNIYME 316
            I   P    A+N L   L+D G + +     NQ L LQPSH  P  +  L +IY +
Sbjct: 212 MIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 267

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.8 bits (198), Expect = 5e-17
 Identities = 27/276 (9%), Positives = 80/276 (28%), Gaps = 11/276 (3%)

Query: 152 QEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGN 211
           Q      +  +     F   +     +        RA +  ++A++L       +     
Sbjct: 26  QNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRV 85

Query: 212 VYKALG-MPQEAIMCYQRAVQTRPNAIAFG-NLASTYYERGQADMAILYYKQAIGCDPRF 269
           + K+L     E +      ++ +P       +              + +    +  D + 
Sbjct: 86  LLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN 145

Query: 270 LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKA 329
             A+ +    +++    D  +Q  +Q L     +         +          A   + 
Sbjct: 146 YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLERE 205

Query: 330 TLAVTTGLSAPFNNLAVIYKQQGNYAD-----AISCYNEVLRIDPLAADG--LVNRGNTY 382
                  +    +N +     +G   D       +  N++L + P  +    +    + Y
Sbjct: 206 VQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 265

Query: 383 KEI--GRVTDAIQDYIRAITIRPTMAEAHANLASAY 416
           +++   +  +      +A+ +   +A+    +   Y
Sbjct: 266 EDMLENQCDNKEDILNKALELCEILAKEKDTIRKEY 301

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.1 bits (186), Expect = 2e-15
 Identities = 32/249 (12%), Positives = 72/249 (28%), Gaps = 13/249 (5%)

Query: 38  LLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKE-KGDIDLAIRYYLVAIEL 96
              A+  +    +       +A+ L       +       K  + D+   + Y    IE 
Sbjct: 48  YFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE 107

Query: 97  RPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYS 156
           +P     W +           ++  +     L  +     A  +   +++   L      
Sbjct: 108 QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQ 167

Query: 157 CYLEALRIQPTFAIAWSNLAGLFMESGDLN------RALQYYKEAVKLKPTFPDAYLNLG 210
              + L+        W+    +   +   N      R +QY  E +KL P    A+  L 
Sbjct: 168 YVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLK 227

Query: 211 NVYKALGMPQEAIMCYQRAVQTRPN---AIAFGNLASTYYE--RGQADMAILYYKQAIGC 265
            + +  G+  +      + +  +P+         L   Y +    Q D       +A+  
Sbjct: 228 GILQDRGL-SKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALEL 286

Query: 266 DPRFLEAYN 274
                +  +
Sbjct: 287 CEILAKEKD 295

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.4 bits (179), Expect = 1e-14
 Identities = 27/238 (11%), Positives = 73/238 (30%), Gaps = 12/238 (5%)

Query: 5   LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLH-DYDMCIARNEEALRLE 63
               + +    ++A + +    E N            +   L  D    +      +  +
Sbjct: 49  FRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ 108

Query: 64  PRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQC 123
           P+  + + +     +   D    + +    +        AW +           +   Q 
Sbjct: 109 PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQY 168

Query: 124 CRQALALNPLLVDAHSNLGNL------MKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAG 177
             Q L  +       +    +         + +++      LE +++ P    AW+ L G
Sbjct: 169 VDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKG 228

Query: 178 LFMESGDLNRALQYYKEAVKLKPTF--PDAYLNLGNVYKAL--GMPQEAIMCYQRAVQ 231
           +  + G L++      + + L+P+   P     L ++Y+ +             +A++
Sbjct: 229 ILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALE 285

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 4e-05
 Identities = 7/62 (11%), Positives = 17/62 (27%)

Query: 390 DAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHT 449
           +   + +  I       + +    +  +     E A K  + A+ L              
Sbjct: 27  NDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVL 86

Query: 450 LQ 451
           L+
Sbjct: 87  LK 88

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 5e-05
 Identities = 14/139 (10%), Positives = 37/139 (26%), Gaps = 8/139 (5%)

Query: 346 VIYKQQGNYADAISCY-----NEVLRI--DPLAADGLVNRGNTYKEIGRVTDAIQDYIRA 398
           V+Y+ +  +AD          N V++I       D         +   R   A +    A
Sbjct: 10  VLYRDRAEWADIDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDA 69

Query: 399 ITIRPTMAEAHANLASAYKDSG-HVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWE 457
           I +               K     +   +      +  +P   +   +    ++ +    
Sbjct: 70  IELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPS 129

Query: 458 DRDRMFSEVEGIIRRQVNM 476
                 +++     +  + 
Sbjct: 130 QELEFIADILNQDAKNYHA 148

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.1 bits (245), Expect = 4e-23
 Identities = 56/275 (20%), Positives = 106/275 (38%), Gaps = 19/275 (6%)

Query: 72  NMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALN 131
                  ++GD+  A+  +  A++  P   +AW  L +      +   A    R+ L L 
Sbjct: 24  EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK 83

Query: 132 PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNL---------------A 176
           P    A   L      + L ++A     + LR  P +A   +                  
Sbjct: 84  PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL 143

Query: 177 GLFMESGDLNRALQYYKEAVKL--KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP 234
           G  +         + +  AV+L      PD    LG ++   G   +A+ C+  A+  RP
Sbjct: 144 GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP 203

Query: 235 N-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 293
           N  + +  L +T     Q++ A+  Y++A+   P ++ +  NLG +  ++G   EA++ +
Sbjct: 204 NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHF 263

Query: 294 NQCLSLQPSHPQALTNLGNIYME-WNMLPAAASYY 327
            + L++Q          G +    W+ L  A S  
Sbjct: 264 LEALNMQRKSRGPRGEGGAMSENIWSTLRLALSML 298

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.5 bits (233), Expect = 1e-21
 Identities = 49/313 (15%), Positives = 96/313 (30%), Gaps = 39/313 (12%)

Query: 3   MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRL 62
                +  + G    A+    +  +++P   +    LG    +     + I+     L L
Sbjct: 23  FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL 82

Query: 63  EPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASA------------ 110
           +P        +A ++  +     A       +   P +A   +                 
Sbjct: 83  KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRI 142

Query: 111 ---YMRKGRLNEAAQCCRQALAL--NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ 165
               +      E  +    A+ L    +  D    LG L    G   +A  C+  AL ++
Sbjct: 143 LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR 202

Query: 166 PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMC 225
           P   + W+ L            A+  Y+ A++L+P +  +  NLG     LG  +EA+  
Sbjct: 203 PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEH 262

Query: 226 YQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGR 285
           +  A+  +  +           E                        ++ L  AL  +G+
Sbjct: 263 FLEALNMQRKSRGPRGEGGAMSE----------------------NIWSTLRLALSMLGQ 300

Query: 286 VDEAIQCYNQCLS 298
            D       + LS
Sbjct: 301 SDAYGAADARDLS 313

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.3 bits (230), Expect = 4e-21
 Identities = 49/335 (14%), Positives = 92/335 (27%), Gaps = 43/335 (12%)

Query: 101 ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLE 160
                      +++G L  A      A+  +P  ++A   LG           A S    
Sbjct: 19  HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRR 78

Query: 161 ALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQ 220
            L ++P    A   LA  F       +A +  ++ ++  P +              G+  
Sbjct: 79  CLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGP 138

Query: 221 EAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAI--GCDPRFLEAYNNLGN 278
                                +  +             +  A+         +    LG 
Sbjct: 139 SK------------------RILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV 180

Query: 279 ALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLS 338
                G  D+A+ C+   LS++P+       LG      N    A + Y+  L +  G  
Sbjct: 181 LFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI 240

Query: 339 APFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRA 398
               NL +     G + +A+  + E L +   +       G   + I             
Sbjct: 241 RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENI------------- 287

Query: 399 ITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQAL 433
                      + L  A    G  +A   +  + L
Sbjct: 288 ----------WSTLRLALSMLGQSDAYGAADARDL 312

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.3 bits (222), Expect = 4e-20
 Identities = 43/275 (15%), Positives = 87/275 (31%), Gaps = 20/275 (7%)

Query: 174 NLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR 233
                 ++ GDL  A+  ++ AV+  P   +A+  LG           AI   +R ++ +
Sbjct: 24  EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK 83

Query: 234 PNAIAFGNLASTYYERG-QADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQC 292
           P+        +  +        A    +  +   P +                       
Sbjct: 84  PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGA------------ 131

Query: 293 YNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKA-TLAVTTGLSAPFNNLAVIYKQQ 351
                        +   LG++  +   L     +  A  L  T+        L V++   
Sbjct: 132 ------GGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS 185

Query: 352 GNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHAN 411
           G Y  A+ C+   L + P         G T     +  +A+  Y RA+ ++P    +  N
Sbjct: 186 GEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN 245

Query: 412 LASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
           L  +  + G    A++ + +AL ++          
Sbjct: 246 LGISCINLGAHREAVEHFLEALNMQRKSRGPRGEG 280

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.7 bits (148), Expect = 1e-10
 Identities = 26/177 (14%), Positives = 54/177 (30%), Gaps = 13/177 (7%)

Query: 1   MHMALAHQMYKSGSYKQALEHSNSVYE--RNPLRTDNLLLLGAIYYQLHDYDMCIARNEE 58
               +   +     + +  E   +        +  D    LG ++    +YD  +     
Sbjct: 138 PSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA 197

Query: 59  ALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLN 118
           AL + P     +  +          + A+  Y  A+EL+P +  +  NL  + +  G   
Sbjct: 198 ALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHR 257

Query: 119 EAAQCCRQALALNP-----------LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI 164
           EA +   +AL +             +  +  S L   +   G      +     L  
Sbjct: 258 EAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 314

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (133), Expect = 8e-09
 Identities = 18/120 (15%), Positives = 39/120 (32%)

Query: 343 NLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR 402
              +   Q+G+  +A+  +   ++ DP   +     G T  E  +   AI    R + ++
Sbjct: 24  EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK 83

Query: 403 PTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRM 462
           P    A   LA ++ +      A +  +  L   P +                   +  +
Sbjct: 84  PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL 143

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 6e-08
 Identities = 36/234 (15%), Positives = 65/234 (27%), Gaps = 25/234 (10%)

Query: 1   MHMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEAL 60
                  + +   +   A   + +              +         +         A+
Sbjct: 104 RQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAV 163

Query: 61  RL--EPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLN 118
           RL       +    +   +   G+ D A+  +  A+ +RPN    W+ L +      +  
Sbjct: 164 RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSE 223

Query: 119 EAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGL 178
           EA    R+AL L P  + +  NLG      G  +EA   +LEAL +Q            +
Sbjct: 224 EAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 283

Query: 179 FMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT 232
                                    + +  L      LG          R + T
Sbjct: 284 SE-----------------------NIWSTLRLALSMLGQSDAYGAADARDLST 314

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 92.4 bits (229), Expect = 3e-21
 Identities = 23/133 (17%), Positives = 45/133 (33%), Gaps = 1/133 (0%)

Query: 79  EKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAH 138
            +G +  A+   + AI+  P  A   S+        G    A +   Q++ L P  +   
Sbjct: 8   SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 67

Query: 139 SNLGNLMKAQGLVQEAYSCYLEALRI-QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVK 197
           S L +L+KA    ++       A  + +            L M S D  +  +   +  +
Sbjct: 68  SQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 127

Query: 198 LKPTFPDAYLNLG 210
           L+        +  
Sbjct: 128 LRQEKGFLANDTS 140

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 80.5 bits (198), Expect = 3e-17
 Identities = 19/127 (14%), Positives = 43/127 (33%), Gaps = 1/127 (0%)

Query: 111 YMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAI 170
            + +G+L +A +   +A+  +P      S+   L+   G  + A    ++++++ P +  
Sbjct: 6   ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 65

Query: 171 AWSNLAGLFMESGDLNRALQYYKEAVKLK-PTFPDAYLNLGNVYKALGMPQEAIMCYQRA 229
             S L  L   +       Q    A  L         L   N+       ++      + 
Sbjct: 66  GASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQI 125

Query: 230 VQTRPNA 236
            + R   
Sbjct: 126 EELRQEK 132

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 79.7 bits (196), Expect = 5e-17
 Identities = 15/136 (11%), Positives = 34/136 (25%), Gaps = 1/136 (0%)

Query: 245 TYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHP 304
                GQ   A+    +AI   P+     ++    L   G  + A +   Q + L P + 
Sbjct: 5   NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 64

Query: 305 QALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAP-FNNLAVIYKQQGNYADAISCYNE 363
              + L ++          A        +              +     +Y        +
Sbjct: 65  PGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQ 124

Query: 364 VLRIDPLAADGLVNRG 379
           +  +         +  
Sbjct: 125 IEELRQEKGFLANDTS 140

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 78.9 bits (194), Expect = 1e-16
 Identities = 22/150 (14%), Positives = 46/150 (30%), Gaps = 3/150 (2%)

Query: 48  DYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNL 107
                +    EA++  P+ A    +        GD + A    + +I+L P +    S L
Sbjct: 11  QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL 70

Query: 108 ASAYMRKGRLNEAAQ-CCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP 166
                      + AQ      +      +       NL       ++     L+   ++ 
Sbjct: 71  RHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 130

Query: 167 TFAIAWSNLAGLFMESGDLNRALQYYKEAV 196
                 ++ +  F +  D++  L  Y E  
Sbjct: 131 EKGFLANDTS--FSDVRDIDDRLGGYIELF 158

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 74.3 bits (182), Expect = 4e-15
 Identities = 19/170 (11%), Positives = 42/170 (24%), Gaps = 36/170 (21%)

Query: 278 NALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGL 337
           NAL + G++ +A++   + +   P                                    
Sbjct: 5   NALSE-GQLQQALELLIEAIKASPKDASLR------------------------------ 33

Query: 338 SAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIR 397
               ++   +    G++  A     + +++ P    G     +  K      D  Q    
Sbjct: 34  ----SSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAAT 89

Query: 398 AITIR-PTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
           A  +             +    S   E   +   Q   LR +      + 
Sbjct: 90  AKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLANDT 139

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 67.8 bits (165), Expect = 5e-13
 Identities = 13/138 (9%), Positives = 35/138 (25%), Gaps = 1/138 (0%)

Query: 6   AHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR 65
                  G  +QALE      + +P           +     D++    +  ++++L P 
Sbjct: 3   WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 62

Query: 66  FAECYGNMANAWKEKGDIDLAIR-YYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCC 124
           +      + +  K         +      +              +  M      + ++  
Sbjct: 63  YLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELA 122

Query: 125 RQALALNPLLVDAHSNLG 142
            Q   L        ++  
Sbjct: 123 LQIEELRQEKGFLANDTS 140

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 66.6 bits (162), Expect = 1e-12
 Identities = 19/140 (13%), Positives = 40/140 (28%), Gaps = 2/140 (1%)

Query: 215 ALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAY 273
           + G  Q+A+     A++  P +A    +        G  + A     Q+I   P +L   
Sbjct: 8   SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 67

Query: 274 NNLGNALKDVGRVDEAIQCYNQCLSL-QPSHPQALTNLGNIYMEWNMLPAAASYYKATLA 332
           + L + +K      +  Q       L +           N+ M        +        
Sbjct: 68  SQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 127

Query: 333 VTTGLSAPFNNLAVIYKQQG 352
           +        N+ +    +  
Sbjct: 128 LRQEKGFLANDTSFSDVRDI 147

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 63.9 bits (155), Expect = 1e-11
 Identities = 14/119 (11%), Positives = 36/119 (30%), Gaps = 1/119 (0%)

Query: 350 QQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAH 409
            +G    A+    E ++  P  A    +        G    A +  +++I + P      
Sbjct: 8   SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 67

Query: 410 ANLASAYKDSGHVEAAIKSYKQ-ALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVE 467
           + L    K +   +   +      +L   +    +    +       +E    +  ++E
Sbjct: 68  SQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIE 126

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 85.3 bits (209), Expect = 7e-19
 Identities = 38/250 (15%), Positives = 74/250 (29%), Gaps = 7/250 (2%)

Query: 209 LGNVYKALGMPQEAIMCYQRAVQTRP-----NAIAFGNLASTYYERGQADMAILYYKQAI 263
           L    +     +  +   ++ + +R       A         Y   G   +A   + QA+
Sbjct: 5   LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 64

Query: 264 GCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAA 323
              P   E +N LG  L   G  D A + ++  L L P++  A  N G           A
Sbjct: 65  AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA 124

Query: 324 ASYYKATLAVTTGLSAPFNNLAVIYKQQGN--YADAISCYNEVLRIDPLAADGLVNRGNT 381
                A              L +  ++       + +  + E    +    + +      
Sbjct: 125 QDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGN 184

Query: 382 YKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE 441
             E   +     D     ++   ++E +  L   Y   G +++A   +K A+        
Sbjct: 185 ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 244

Query: 442 ATCNLLHTLQ 451
                L  L 
Sbjct: 245 EHRYALLELS 254

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 84.1 bits (206), Expect = 2e-18
 Identities = 41/255 (16%), Positives = 79/255 (30%), Gaps = 7/255 (2%)

Query: 38  LLGAIYYQLHDYDMCIARNEEALR----LEPRFAECYGNMANAWKEKGDIDLAIRYYLVA 93
           +L          ++ +AR E+ L      +   A+        +   G   LA   +  A
Sbjct: 4   VLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQA 63

Query: 94  IELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQE 153
           + +RP+  + ++ L     + G  + A +     L L+P    AH N G  +   G  + 
Sbjct: 64  LAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKL 123

Query: 154 AYSCYLEALRIQPT--FAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGN 211
           A    L   +  P   F   W  LA   ++       L+ + E    +    +       
Sbjct: 124 AQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLG 183

Query: 212 VYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFL 270
                 + +              + +     L   Y   G  D A   +K A+  +    
Sbjct: 184 NISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 243

Query: 271 EAYNNLGNALKDVGR 285
             +      L  +G+
Sbjct: 244 VEHRYALLELSLLGQ 258

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 81.0 bits (198), Expect = 2e-17
 Identities = 43/254 (16%), Positives = 71/254 (27%), Gaps = 7/254 (2%)

Query: 5   LAHQMYKSGSYKQALEHSNSVYER----NPLRTDNLLLLGAIYYQLHDYDMCIARNEEAL 60
           LA  +  +   +  L     +       +  R   L   G +Y  L    +      +AL
Sbjct: 5   LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 64

Query: 61  RLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEA 120
            + P   E +  +     + G+ D A   +   +EL P +  A  N   A    GR   A
Sbjct: 65  AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA 124

Query: 121 AQCCRQALALNPL--LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGL 178
                     +P          L      +   +E    + E    +           G 
Sbjct: 125 QDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGN 184

Query: 179 FMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAI 237
             E   + R      +   L     +    LG  Y +LG    A   ++ AV     N +
Sbjct: 185 ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 244

Query: 238 AFGNLASTYYERGQ 251
                       GQ
Sbjct: 245 EHRYALLELSLLGQ 258

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 73.3 bits (178), Expect = 8e-15
 Identities = 41/233 (17%), Positives = 77/233 (33%), Gaps = 7/233 (3%)

Query: 107 LASAYMRKGRLNEAAQCCRQALA----LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEAL 162
           LA       +         Q LA     +          G L  + GL   A + + +AL
Sbjct: 5   LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 64

Query: 163 RIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEA 222
            I+P     ++ L     ++G+ + A + +   ++L PT+  A+LN G      G  + A
Sbjct: 65  AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA 124

Query: 223 IMCYQRAVQTR---PNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNA 279
                   Q     P    +  LA    +  QA   +  + +    +             
Sbjct: 125 QDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGN 184

Query: 280 LKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLA 332
           + +   ++          SL     +    LG  Y+    L +A + +K  +A
Sbjct: 185 ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 237

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 67.9 bits (164), Expect = 5e-13
 Identities = 32/219 (14%), Positives = 57/219 (26%), Gaps = 2/219 (0%)

Query: 1   MHMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEAL 60
           +           G    A    +      P   +    LG    Q  ++D      +  L
Sbjct: 39  LLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL 98

Query: 61  RLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEA 120
            L+P +   + N   A    G   LA    L   +  PN       L  A  +       
Sbjct: 99  ELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAK 158

Query: 121 AQCCRQALALNPLLVDAHSNLGNLMKAQ--GLVQEAYSCYLEALRIQPTFAIAWSNLAGL 178
               +     +      +     L       L++   +   +   +    +     L   
Sbjct: 159 EVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKY 218

Query: 179 FMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG 217
           ++  GDL+ A   +K AV         +         LG
Sbjct: 219 YLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLG 257

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 51.4 bits (121), Expect = 2e-07
 Identities = 29/124 (23%), Positives = 46/124 (37%), Gaps = 4/124 (3%)

Query: 344 LAVIYKQQGNYADAISCYNEVLRI----DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAI 399
           LAV  +        ++   ++L      D   A  L  RG  Y  +G    A  D+ +A+
Sbjct: 5   LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 64

Query: 400 TIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDR 459
            IRP M E    L      +G+ +AA +++   L L P +  A  N    L      +  
Sbjct: 65  AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA 124

Query: 460 DRMF 463
               
Sbjct: 125 QDDL 128

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 47.1 bits (110), Expect = 3e-06
 Identities = 14/116 (12%), Positives = 34/116 (29%)

Query: 1   MHMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEAL 60
           + + LA Q       K+ L+      ++     + +        +    +   A   +  
Sbjct: 143 LWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNT 202

Query: 61  RLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGR 116
            L    +E    +   +   GD+D A   + +A+    +               G+
Sbjct: 203 SLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQ 258

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 41.7 bits (96), Expect = 2e-04
 Identities = 33/191 (17%), Positives = 56/191 (29%), Gaps = 4/191 (2%)

Query: 276 LGNALKDVGRVDEAIQCYNQCLS----LQPSHPQALTNLGNIYMEWNMLPAAASYYKATL 331
           L   L+   + +  +    Q L+          Q L   G +Y    +   A + +   L
Sbjct: 5   LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 64

Query: 332 AVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDA 391
           A+   +   FN L +   Q GN+  A   ++ VL +DP      +NRG      GR   A
Sbjct: 65  AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA 124

Query: 392 IQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 451
             D +      P        L  A +     +A     +       +         +   
Sbjct: 125 QDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGN 184

Query: 452 CVCSWEDRDRM 462
                      
Sbjct: 185 ISEQTLMERLK 195

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 41.0 bits (94), Expect = 4e-04
 Identities = 25/136 (18%), Positives = 45/136 (33%)

Query: 341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAIT 400
                V+Y   G  A A + +++ L I P   +     G    + G    A + +   + 
Sbjct: 40  LYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE 99

Query: 401 IRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRD 460
           + PT   AH N   A    G  + A           P+ P  +  L    Q +   + ++
Sbjct: 100 LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKE 159

Query: 461 RMFSEVEGIIRRQVNM 476
            +    E   + Q   
Sbjct: 160 VLKQHFEKSDKEQWGW 175

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 40.2 bits (92), Expect = 6e-04
 Identities = 17/94 (18%), Positives = 27/94 (28%), Gaps = 3/94 (3%)

Query: 383 KEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 442
             + R+   +             A+        Y   G    A   + QAL +RPD PE 
Sbjct: 17  VILARMEQILA---SRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEV 73

Query: 443 TCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNM 476
              L   L    +++     F  V  +       
Sbjct: 74  FNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA 107

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.3 bits (202), Expect = 2e-18
 Identities = 24/197 (12%), Positives = 55/197 (27%), Gaps = 11/197 (5%)

Query: 101 ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLE 160
           A       +      +  EAA C  +A+  NPL+   ++N           ++A +    
Sbjct: 4   AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63

Query: 161 ALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQ 220
           AL +      A   L    +E    + A+   + A  L       + +       +   +
Sbjct: 64  ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 123

Query: 221 EAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNAL 280
                 +R +                       +     ++ +    R  E + + G+  
Sbjct: 124 RWNSIEERRIHQES-----------ELHSYLTRLIAAERERELEECQRNHEGHEDDGHIR 172

Query: 281 KDVGRVDEAIQCYNQCL 297
                ++     Y   +
Sbjct: 173 AQQACIEAKHDKYMADM 189

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 80.4 bits (197), Expect = 8e-18
 Identities = 30/171 (17%), Positives = 56/171 (32%), Gaps = 5/171 (2%)

Query: 67  AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQ 126
           A+      N          A   Y  AI   P  A  ++N A  Y++  +  +A   CR+
Sbjct: 4   AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63

Query: 127 ALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLN 186
           AL L+   V AH  LG          EA +    A  +     + + +          L 
Sbjct: 64  ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDI-----PSALR 118

Query: 187 RALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAI 237
            A +    +++ +    ++ L+           +  +   QR  +   +  
Sbjct: 119 IAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDG 169

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.1 bits (191), Expect = 6e-17
 Identities = 23/183 (12%), Positives = 50/183 (27%), Gaps = 5/183 (2%)

Query: 34  DNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVA 93
             L   G   +    Y    A    A+   P  A  Y N A  + +    + A+     A
Sbjct: 5   QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRA 64

Query: 94  IELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQE 153
           +EL      A   L    +     +EA    ++A +L         +          ++ 
Sbjct: 65  LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDD-----IPSALRI 119

Query: 154 AYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVY 213
           A      ++  +     +  +     + + +  R L+  +   +              + 
Sbjct: 120 AKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIE 179

Query: 214 KAL 216
              
Sbjct: 180 AKH 182

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.5 bits (187), Expect = 2e-16
 Identities = 24/172 (13%), Positives = 50/172 (29%), Gaps = 5/172 (2%)

Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 330
           +     GN L    +  EA  CY + ++  P      TN    Y++      A +  +  
Sbjct: 5   QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRA 64

Query: 331 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 390
           L +          L     +  +Y +AI+       +         +   +   I     
Sbjct: 65  LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI----- 119

Query: 391 AIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 442
           A +    +I  R    E+  +       +   E  ++  ++      D    
Sbjct: 120 AKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHI 171

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.0 bits (183), Expect = 6e-16
 Identities = 25/195 (12%), Positives = 52/195 (26%), Gaps = 5/195 (2%)

Query: 234 PNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 293
           P+A       +  +   +   A   Y +AI  +P     Y N       + + ++A+   
Sbjct: 2   PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADC 61

Query: 294 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGN 353
            + L L     +A   LG   +E      A +  +   ++     A    L         
Sbjct: 62  RRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL-----AKEQRLNFGDDIPSA 116

Query: 354 YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLA 413
              A       +    +  +  ++   T          +++  R            A  A
Sbjct: 117 LRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQA 176

Query: 414 SAYKDSGHVEAAIKS 428
                     A +  
Sbjct: 177 CIEAKHDKYMADMDE 191

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.2 bits (168), Expect = 6e-14
 Identities = 19/182 (10%), Positives = 49/182 (26%), Gaps = 5/182 (2%)

Query: 8   QMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFA 67
           +++    Y +A         RNPL           Y ++   +  +A    AL L+ +  
Sbjct: 13  RLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV 72

Query: 68  ECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQA 127
           + +  +     E    D AI     A  L       + +   + +R  +     +    +
Sbjct: 73  KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK-----KKRWNS 127

Query: 128 LALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNR 187
           +    +  ++  +           +                    +  A +  +      
Sbjct: 128 IEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMA 187

Query: 188 AL 189
            +
Sbjct: 188 DM 189

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.7 bits (164), Expect = 2e-13
 Identities = 24/191 (12%), Positives = 49/191 (25%), Gaps = 6/191 (3%)

Query: 169 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQR 228
           A                  A   Y  A+   P     Y N    Y  +  P++A+   +R
Sbjct: 4   AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63

Query: 229 AVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVD 287
           A++    +  A   L     E    D AI   ++A          + +   +      + 
Sbjct: 64  ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSA-----LR 118

Query: 288 EAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVI 347
            A +     +  +  H ++  +     +            +                A I
Sbjct: 119 IAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACI 178

Query: 348 YKQQGNYADAI 358
             +   Y   +
Sbjct: 179 EAKHDKYMADM 189

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.9 bits (162), Expect = 4e-13
 Identities = 21/107 (19%), Positives = 40/107 (37%)

Query: 341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAIT 400
                        Y +A +CY   +  +PL A    NR   Y ++ +   A+ D  RA+ 
Sbjct: 7   LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE 66

Query: 401 IRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLL 447
           +     +AH  L     +    + AI + ++A  L  +      + +
Sbjct: 67  LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDI 113

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.7 bits (107), Expect = 6e-06
 Identities = 24/162 (14%), Positives = 53/162 (32%), Gaps = 12/162 (7%)

Query: 2   HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
           +   A    K    +QAL       E +         LG    ++  YD  IA  + A  
Sbjct: 41  YTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYS 100

Query: 62  LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA 121
           L       +G+   +      + +A +    +IE R    ++  +     +         
Sbjct: 101 LAKEQRLNFGDDIPSA-----LRIAKKKRWNSIEERRIHQESELHSYLTRLIAAEREREL 155

Query: 122 QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALR 163
           + C++         + H + G++   Q  ++  +  Y+  + 
Sbjct: 156 EECQRNH-------EGHEDDGHIRAQQACIEAKHDKYMADMD 190

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.6 bits (86), Expect = 0.003
 Identities = 7/58 (12%), Positives = 12/58 (20%)

Query: 406 AEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMF 463
           A+      +          A   Y +A+   P       N       +   E      
Sbjct: 4   AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADC 61

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 85.4 bits (209), Expect = 2e-18
 Identities = 41/366 (11%), Positives = 86/366 (23%), Gaps = 31/366 (8%)

Query: 58  EALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPN-----FADAWSNLASAYM 112
           + +R +   AE     A      G+ D A R   +A+E  P         A S L     
Sbjct: 3   KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH 62

Query: 113 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAW 172
            KG L  +    +Q   +       H  L +L+       +          +Q  +    
Sbjct: 63  CKGELTRSLALMQQTEQMARQHDVWHYALWSLI-------QQSEILFAQGFLQTAWETQE 115

Query: 173 SNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT 232
                +  +  +     ++                      ++      +    Q+    
Sbjct: 116 KAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 175

Query: 233 RPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQC 292
                           R Q +                  A        +  G    A   
Sbjct: 176 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANW 235

Query: 293 YNQCLSLQPSHPQAL----TNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPF------N 342
                  + ++   L     N+    +       A    +        L           
Sbjct: 236 LRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLL 295

Query: 343 NLAVIYKQQGNYADAISCYNEVLRIDP---------LAADGLVNRGNTYKEIGRVTDAIQ 393
            L  +Y Q G  +DA     + L++           +  + +  +     ++  + +  Q
Sbjct: 296 LLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355

Query: 394 DYIRAI 399
              + I
Sbjct: 356 HRAQRI 361

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 85.4 bits (209), Expect = 3e-18
 Identities = 32/317 (10%), Positives = 73/317 (23%), Gaps = 42/317 (13%)

Query: 27  ERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR-----FAECYGNMANAWKEKG 81
             + +  +   L   +     + D      + AL   P             +      KG
Sbjct: 6   REDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKG 65

Query: 82  DIDLAIRYYLVAIELR------PNFADAWSNLASAYMRKGRLNEAAQCCRQALALNP--- 132
           ++  ++       ++            +    +     +G L  A +   +A  L     
Sbjct: 66  ELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQH 125

Query: 133 -----LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFM------- 180
                +          L+ A   + EA +     + +  ++           +       
Sbjct: 126 LEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLAR 185

Query: 181 -----ESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
                    LNR                +A       ++  G    A    +   +    
Sbjct: 186 GDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFA 245

Query: 236 -----AIAFGNLASTYYERGQADMAILYYKQAI------GCDPRFLEAYNNLGNALKDVG 284
                   + N+A      G+ + A +  ++                    L       G
Sbjct: 246 NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAG 305

Query: 285 RVDEAIQCYNQCLSLQP 301
           R  +A +     L L  
Sbjct: 306 RKSDAQRVLLDALKLAN 322

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 82.7 bits (202), Expect = 2e-17
 Identities = 41/366 (11%), Positives = 87/366 (23%), Gaps = 72/366 (19%)

Query: 93  AIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNP-----LLVDAHSNLGNLMKA 147
            I      A+  +  A   +  G  +EA +  + AL   P       + A S LG ++  
Sbjct: 4   DIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHC 63

Query: 148 QGLVQEAYSCYLEALRI------QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPT 201
           +G +  + +   +  ++            +    + +    G L  A +  ++A +L   
Sbjct: 64  KGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINE 123

Query: 202 FPD--------AYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQAD 253
                             +  A     EA    +  ++   +      L         + 
Sbjct: 124 QHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSL 183

Query: 254 MAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNI 313
                                          +++                  A       
Sbjct: 184 ARGDLDNAR---------------------SQLNRLENLLGNGKYHSDWISNANKVRVIY 222

Query: 314 YMEWNMLPAAASYYKATLAVTTG----LSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP 369
           +       AAA++ + T          L   + N+A      G +  A     E+     
Sbjct: 223 WQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENAR 282

Query: 370 LAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSY 429
                                       ++ +   +      L   Y  +G    A +  
Sbjct: 283 ----------------------------SLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVL 314

Query: 430 KQALLL 435
             AL L
Sbjct: 315 LDALKL 320

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 64.2 bits (154), Expect = 2e-11
 Identities = 34/308 (11%), Positives = 68/308 (22%), Gaps = 46/308 (14%)

Query: 2   HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLL------LGAIYYQLHDYDMCIAR 55
              L   ++  G   ++L       +                    I +           
Sbjct: 54  TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWET 113

Query: 56  NEEALRLEPRF--------AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNL 107
            E+A +L                   A        +D A       IE+  ++       
Sbjct: 114 QEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 173

Query: 108 ASAYM------------RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAY 155
             A +             + +LN            +  + +A+       +  G    A 
Sbjct: 174 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAA 233

Query: 156 SCYLEALRIQ----PTFAIAWSNLAGLFMESGDLNRALQYYKEAV------KLKPTFPDA 205
           +      + +          W N+A   +  G+   A    +E        +L       
Sbjct: 234 NWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRN 293

Query: 206 YLNLGNVYKALGMPQEAIMCYQRAVQTRPN----------AIAFGNLASTYYERGQADMA 255
            L L  +Y   G   +A      A++                A         +       
Sbjct: 294 LLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPEL 353

Query: 256 ILYYKQAI 263
             +  Q I
Sbjct: 354 EQHRAQRI 361

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.0 bits (199), Expect = 4e-18
 Identities = 26/199 (13%), Positives = 55/199 (27%), Gaps = 32/199 (16%)

Query: 72  NMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALN 131
           N      +K D   A+  +     ++   +    N+   Y     + EA +   +++  +
Sbjct: 10  NEGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD 66

Query: 132 PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQY 191
             L  A+   G L         A     EAL                       N+ + Y
Sbjct: 67  KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG------------------NQLIDY 108

Query: 192 YKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQ 251
               ++ K    +   N+  +Y      ++A      A   +                 +
Sbjct: 109 KILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP-----------RHSK 157

Query: 252 ADMAILYYKQAIGCDPRFL 270
            D A+    +    +P  +
Sbjct: 158 IDKAMECVWKQKLYEPVVI 176

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.8 bits (188), Expect = 1e-16
 Identities = 28/202 (13%), Positives = 56/202 (27%), Gaps = 33/202 (16%)

Query: 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 295
           AI+  N      ++     A+  +               N+G     +  + EA + + +
Sbjct: 5   AISLWNEGVLAADKKDWKGALDAFSAVQDPHS---RICFNIGCMYTILKNMTEAEKAFTR 61

Query: 296 CLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYA 355
            ++       A    G +Y +      A    K  L           N  + YK  G   
Sbjct: 62  SINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR------GNQLIDYKILG--- 112

Query: 356 DAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASA 415
                    L+    A + L N    Y +      A +    A +++             
Sbjct: 113 ---------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE----------- 152

Query: 416 YKDSGHVEAAIKSYKQALLLRP 437
                 ++ A++   +  L  P
Sbjct: 153 -PRHSKIDKAMECVWKQKLYEP 173

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.6 bits (177), Expect = 4e-15
 Identities = 27/211 (12%), Positives = 54/211 (25%), Gaps = 40/211 (18%)

Query: 193 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQA 252
            EA+ L         N G +       + A+  +       P++    N+   Y      
Sbjct: 3   VEAISLW--------NEGVLAADKKDWKGALDAFSAVQD--PHSRICFNIGCMYTILKNM 52

Query: 253 DMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGN 312
             A   + ++I  D     AY   G       + D AI+   + L     +         
Sbjct: 53  TEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ-------- 104

Query: 313 IYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAA 372
                        Y    L           N+A +Y ++  +  A         +     
Sbjct: 105 ----------LIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 154

Query: 373 DGLVNRGNTYKEIGRVTDAIQDYIRAITIRP 403
              +++            A++   +     P
Sbjct: 155 HSKIDK------------AMECVWKQKLYEP 173

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.2 bits (171), Expect = 2e-14
 Identities = 25/204 (12%), Positives = 65/204 (31%), Gaps = 33/204 (16%)

Query: 39  LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP 98
            G +     D+   +   +    ++   +    N+   +    ++  A + +  +I    
Sbjct: 11  EGVLAADKKDWKGAL---DAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 67

Query: 99  NFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCY 158
           + A A+      Y +  + + A +  ++AL             GN +             
Sbjct: 68  HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR---------GNQLIDY---------K 109

Query: 159 LEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGM 218
           +  L+ +        N+A ++ +  +  +A +    A  +K     + ++          
Sbjct: 110 ILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKID---------- 159

Query: 219 PQEAIMCYQRAVQTRPNAIAFGNL 242
             +A+ C  +     P  I  G L
Sbjct: 160 --KAMECVWKQKLYEPVVIPVGRL 181

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.2 bits (171), Expect = 2e-14
 Identities = 29/164 (17%), Positives = 52/164 (31%), Gaps = 21/164 (12%)

Query: 275 NLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT 334
           N G    D      A+  ++    +Q  H +   N+G +Y     +  A   +  ++   
Sbjct: 10  NEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD 66

Query: 335 TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQD 394
             L+  +    ++Y Q   Y  AI    E L            RGN           I  
Sbjct: 67  KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQ---------LRGN---------QLIDY 108

Query: 395 YIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 438
            I  +  +    E   N+A  Y      + A +    A  ++ +
Sbjct: 109 KILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.5 bits (156), Expect = 3e-12
 Identities = 24/210 (11%), Positives = 60/210 (28%), Gaps = 37/210 (17%)

Query: 5   LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64
                     +K AL+  ++V + +         +G +Y  L +          ++  + 
Sbjct: 11  EGVLAADKKDWKGALDAFSAVQDPHS---RICFNIGCMYTILKNMTEAEKAFTRSINRDK 67

Query: 65  RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCC 124
             A  Y      + +    DLAI+    A+           N    Y   G         
Sbjct: 68  HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG------NQLIDYKILG--------- 112

Query: 125 RQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD 184
              L       +   N+  +   +   ++A      A  ++                   
Sbjct: 113 ---LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE------------PRHSK 157

Query: 185 LNRALQYYKEAVKLKPTFPDAYLNLGNVYK 214
           +++A++   +    +P      + +G +++
Sbjct: 158 IDKAMECVWKQKLYEPV----VIPVGRLFR 183

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (135), Expect = 1e-09
 Identities = 19/98 (19%), Positives = 40/98 (40%), Gaps = 3/98 (3%)

Query: 343 NLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR 402
           N  V+   + ++  A+  ++    +    +    N G  Y  +  +T+A + + R+I   
Sbjct: 10  NEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD 66

Query: 403 PTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFP 440
             +A A+      Y  +   + AIK  K+AL+      
Sbjct: 67  KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ 104

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.3 bits (202), Expect = 1e-17
 Identities = 30/272 (11%), Positives = 74/272 (27%), Gaps = 42/272 (15%)

Query: 67  AECYGNMANAWKEKGDIDLAIRYYLVAIEL------RPNFADAWSNLASAYMRKGRLNEA 120
           A+     A  ++ + +++LA   +L A +            + +      +   G    A
Sbjct: 37  ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96

Query: 121 AQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFM 180
                 A                +   +G  +   +   E   I       ++     + 
Sbjct: 97  VDSLENA--------------IQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYE 142

Query: 181 ESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN----- 235
            +G+     Q               ++   ++    G   EA   Y + +++        
Sbjct: 143 LAGEWYAQDQS-------VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQ 195

Query: 236 ---AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEA-----YNNLGNAL--KDVGR 285
                 F            A  A    ++    DP F ++       +L +A+   D  +
Sbjct: 196 WSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQ 255

Query: 286 VDEAIQCYNQCLSLQPSHPQALTNLGNIYMEW 317
           + E  + ++  + L       L  +     + 
Sbjct: 256 LSEHCKEFDNFMRLDKWKITILNKIKESIQQQ 287

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.9 bits (201), Expect = 1e-17
 Identities = 31/248 (12%), Positives = 66/248 (26%), Gaps = 28/248 (11%)

Query: 204 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAI 263
           D  +    +Y+       A   + +A   +  A       +TY E         +     
Sbjct: 38  DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVE-----AYKCFKSG-- 90

Query: 264 GCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAA 323
           G     +++  N        G+         +   +  +         + Y         
Sbjct: 91  GNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYEL------- 143

Query: 324 ASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPL-------AADGLV 376
           A  + A        +  F   A +    G Y +A   Y+++++             D  +
Sbjct: 144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203

Query: 377 NRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAH-----ANLASAY--KDSGHVEAAIKSY 429
            +G           A +      +  P  A++       +L  A    DS  +    K +
Sbjct: 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEF 263

Query: 430 KQALLLRP 437
              + L  
Sbjct: 264 DNFMRLDK 271

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.2 bits (168), Expect = 2e-13
 Identities = 28/250 (11%), Positives = 66/250 (26%), Gaps = 34/250 (13%)

Query: 169 AIAWSNLAGLFMESGDLNRALQYYKEAVKL------KPTFPDAYLNLGNVYKALGMPQEA 222
           A      A ++    +LN A   + +A         +    + Y+     +K+ G    A
Sbjct: 37  ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96

Query: 223 IMCYQRAVQTRPN--------------AIAFGNLASTYYERGQADMAILYYKQAIGCDPR 268
           +   + A+Q   +                   N    Y +          +         
Sbjct: 97  VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156

Query: 269 FLEAYNNLGNALKDVGRVDEAIQCYNQCL-------SLQPSHPQALTNLGNIYMEWNMLP 321
             + +    +     G+  EA   Y++ +         Q S        G   +      
Sbjct: 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAV 216

Query: 322 AAASYYKATLAVTTGLSAPF-----NNLAVIYKQQ--GNYADAISCYNEVLRIDPLAADG 374
           AAA   +   +     +         +L     +      ++    ++  +R+D      
Sbjct: 217 AAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITI 276

Query: 375 LVNRGNTYKE 384
           L     + ++
Sbjct: 277 LNKIKESIQQ 286

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.1 bits (152), Expect = 2e-11
 Identities = 15/190 (7%), Positives = 37/190 (19%), Gaps = 27/190 (14%)

Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQ------ALTNLGNIYMEWNMLPAAA 324
           +         +    ++ A   + +    Q                   +        A 
Sbjct: 38  DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97

Query: 325 SYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKE 384
                             N   I+  +G +    +   E+  I         N  + Y +
Sbjct: 98  DSL--------------ENAIQIFTHRGQFRRGANFKFELGEILE-------NDLHDYAK 136

Query: 385 IGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATC 444
                +   ++           +     A      G    A   Y + +        +  
Sbjct: 137 AIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW 196

Query: 445 NLLHTLQCVC 454
           +L        
Sbjct: 197 SLKDYFLKKG 206

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.1 bits (173), Expect = 3e-15
 Identities = 30/129 (23%), Positives = 47/129 (36%), Gaps = 17/129 (13%)

Query: 193 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQ 251
           K+A+K K         LGN          A+  Y +A +  P N     N A+ Y+E+G 
Sbjct: 2   KQALKEK--------ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGD 53

Query: 252 ADMAILYYKQAIGCDPRFLEAY-------NNLGNALKDVGRVDEAIQCYNQCLSLQPSHP 304
            +      ++AI       E Y         +GN+     +  +AI  YN+ L+     P
Sbjct: 54  YNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TP 112

Query: 305 QALTNLGNI 313
             L      
Sbjct: 113 DVLKKCQQA 121

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.0 bits (152), Expect = 2e-12
 Identities = 22/113 (19%), Positives = 42/113 (37%), Gaps = 7/113 (6%)

Query: 137 AHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAV 196
               LGN    +     A   Y +A  + PT     +N A ++ E GD N+  +  ++A+
Sbjct: 6   KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65

Query: 197 KLKPTFPDAY-------LNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNL 242
           ++     + Y         +GN Y      ++AI  Y +++            
Sbjct: 66  EVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKC 118

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (150), Expect = 4e-12
 Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 7/106 (6%)

Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 330
                LGN        D A++ Y++   L P++   +TN   +Y E           +  
Sbjct: 5   LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKA 64

Query: 331 L-------AVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP 369
           +            ++  +  +   Y ++  Y DAI  YN+ L    
Sbjct: 65  IEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (149), Expect = 5e-12
 Identities = 18/123 (14%), Positives = 42/123 (34%), Gaps = 8/123 (6%)

Query: 101 ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLE 160
           A     L +   +K   + A +   +A  L+P  +   +N   +   +G   +      +
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63

Query: 161 ALRIQPTFA-------IAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVY 213
           A+ +             A++ +   + +      A+ +Y +++    T PD         
Sbjct: 64  AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAE 122

Query: 214 KAL 216
           K L
Sbjct: 123 KIL 125

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.3 bits (145), Expect = 2e-11
 Identities = 18/105 (17%), Positives = 38/105 (36%), Gaps = 7/105 (6%)

Query: 341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAIT 400
              L     ++ ++  A+  Y++   +DP     + N+   Y E G      +   +AI 
Sbjct: 7   EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66

Query: 401 IRPTMAEAH-------ANLASAYKDSGHVEAAIKSYKQALLLRPD 438
           +     E +       A + ++Y      + AI  Y ++L     
Sbjct: 67  VGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (142), Expect = 4e-11
 Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 23/139 (16%)

Query: 16  KQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMAN 75
           KQAL+                  LG   Y+  D+D  +   ++A  L+P       N A 
Sbjct: 2   KQALKEKE---------------LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAA 46

Query: 76  AWKEKGDIDLAIRYYLVAIELRPNFAD-------AWSNLASAYMRKGRLNEAAQCCRQAL 128
            + EKGD +        AIE+     +       A++ + ++Y ++ +  +A     ++L
Sbjct: 47  VYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL 106

Query: 129 ALNPLLVDAHSNLGNLMKA 147
           A +    D         K 
Sbjct: 107 AEHRTP-DVLKKCQQAEKI 124

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 6e-06
 Identities = 19/116 (16%), Positives = 36/116 (31%), Gaps = 8/116 (6%)

Query: 2   HMALAHQMYKSGSYKQALEHSNSVYERNPL-------RTDNLLLLGAIYYQLHDYDMCIA 54
              L +  YK   +  AL+H +   E +P        +       G         +  I 
Sbjct: 7   EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66

Query: 55  RNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASA 110
              E      + A+ Y  + N++ ++     AI +Y  ++       D       A
Sbjct: 67  VGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQA 121

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 3e-04
 Identities = 14/75 (18%), Positives = 28/75 (37%)

Query: 372 ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 431
           A      GN   +      A++ Y +A  + PT      N A+ Y + G      +  ++
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63

Query: 432 ALLLRPDFPEATCNL 446
           A+ +  +  E    +
Sbjct: 64  AIEVGRENREDYRQI 78

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.7 bits (157), Expect = 3e-13
 Identities = 11/118 (9%), Positives = 32/118 (27%), Gaps = 6/118 (5%)

Query: 174 NLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKA---LGMPQEAIMCYQRAV 230
            +    +   DL +  + ++                             ++ I+  +  +
Sbjct: 4   AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL 63

Query: 231 QTRPN---AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGR 285
                         LA   Y   + + A+ Y +  +  +P+  +A        K + +
Sbjct: 64  PKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 121

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (143), Expect = 3e-11
 Identities = 13/117 (11%), Positives = 33/117 (28%), Gaps = 5/117 (4%)

Query: 106 NLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKA---QGLVQEAYSCYLEAL 162
            + +  +    L +  +  +   A   +           +        +++      E L
Sbjct: 4   AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL 63

Query: 163 RIQPT--FAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG 217
                         LA       +  +AL+Y +  ++ +P    A      + KA+ 
Sbjct: 64  PKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 120

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (128), Expect = 3e-09
 Identities = 9/110 (8%), Positives = 22/110 (20%), Gaps = 5/110 (4%)

Query: 72  NMANAWKEKGDIDLAIRYYLVAIELRPNFADA---WSNLASAYMRKGRLNEAAQCCRQAL 128
            + N      D+    + +                ++           + +      + L
Sbjct: 4   AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL 63

Query: 129 AL--NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLA 176
                    D    L          ++A       L+ +P    A     
Sbjct: 64  PKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELER 113

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (127), Expect = 4e-09
 Identities = 12/119 (10%), Positives = 27/119 (22%), Gaps = 5/119 (4%)

Query: 274 NNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAV 333
             + N L  V  + +  + +    +                +                 +
Sbjct: 3   EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEEL 62

Query: 334 TTGLSAPFN-----NLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGR 387
               S          LAV   +   Y  A+     +L+ +P             K + +
Sbjct: 63  LPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 121

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (126), Expect = 5e-09
 Identities = 10/107 (9%), Positives = 20/107 (18%), Gaps = 5/107 (4%)

Query: 341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD---AIQDYIR 397
              +        +       +        ++                  D    I     
Sbjct: 2   MEAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEE 61

Query: 398 AITIRPT--MAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 442
            +         +    LA         E A+K  +  L   P   +A
Sbjct: 62  LLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 108

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (124), Expect = 1e-08
 Identities = 10/121 (8%), Positives = 29/121 (23%), Gaps = 6/121 (4%)

Query: 2   HM-ALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMC-----IAR 55
           HM A+ +++       +  +   S      +             +    D       +  
Sbjct: 1   HMEAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLE 60

Query: 56  NEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKG 115
                  +    +    +A       + + A++Y    ++  P    A            
Sbjct: 61  ELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 120

Query: 116 R 116
           +
Sbjct: 121 K 121

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (124), Expect = 1e-08
 Identities = 15/98 (15%), Positives = 21/98 (21%), Gaps = 5/98 (5%)

Query: 57  EEALRLEPRFAE---CYGNMANAWKEKGDIDLAIRYYLVAIELRPN--FADAWSNLASAY 111
           +               Y       +   DI   I      +         D    LA   
Sbjct: 23  QSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82

Query: 112 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQG 149
            R     +A +  R  L   P    A      + KA  
Sbjct: 83  YRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 120

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 64.2 bits (155), Expect = 2e-12
 Identities = 19/156 (12%), Positives = 38/156 (24%), Gaps = 19/156 (12%)

Query: 67  AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQ 126
           A         + + G    A+  Y   +                               +
Sbjct: 15  AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEK-------------------E 55

Query: 127 ALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLN 186
           + A    L+ A  NL           +A  C  +AL +               +   +  
Sbjct: 56  SKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFE 115

Query: 187 RALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEA 222
            A   +++ +++ P    A L +    K      E 
Sbjct: 116 SAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNER 151

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 61.1 bits (147), Expect = 2e-11
 Identities = 23/129 (17%), Positives = 41/129 (31%), Gaps = 16/129 (12%)

Query: 204 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN----------------AIAFGNLASTYY 247
                 G VY   G   +A++ Y + V                       AF NLA  Y 
Sbjct: 16  AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL 75

Query: 248 ERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQAL 307
           +  +   A+    +A+G D    +     G A   +   + A   + + L + P +  A 
Sbjct: 76  KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAAR 135

Query: 308 TNLGNIYME 316
             +     +
Sbjct: 136 LQIFMCQKK 144

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 60.7 bits (146), Expect = 3e-11
 Identities = 31/161 (19%), Positives = 53/161 (32%), Gaps = 20/161 (12%)

Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 330
                 G      G+  +A+  Y + +S                             K +
Sbjct: 16  AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGL-------------------SEKES 56

Query: 331 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 390
            A  + L A F NLA+ Y +   Y  A+ C ++ L +D     GL  RG     +     
Sbjct: 57  KASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFES 116

Query: 391 AIQDYIRAITIRPTMAEAHANLASAYKDSG-HVEAAIKSYK 430
           A  D+ + + + P    A   +    K +  H E   ++Y 
Sbjct: 117 AKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYA 157

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 57.7 bits (138), Expect = 3e-10
 Identities = 20/137 (14%), Positives = 42/137 (30%), Gaps = 16/137 (11%)

Query: 169 AIAWSNLAGLFMESGDLNRALQYY---------------KEAVKLKPTFPDAYLNLGNVY 213
           A        ++ + G   +A+  Y               KE+   +     A+LNL   Y
Sbjct: 15  AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 74

Query: 214 KALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEA 272
             L    +A+ C  +A+                     + + A   +++ +  +P+   A
Sbjct: 75  LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAA 134

Query: 273 YNNLGNALKDVGRVDEA 289
              +    K     +E 
Sbjct: 135 RLQIFMCQKKAKEHNER 151

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 55.0 bits (131), Expect = 3e-09
 Identities = 20/128 (15%), Positives = 38/128 (29%), Gaps = 15/128 (11%)

Query: 10  YKSGSYKQALEHSNSVY---------------ERNPLRTDNLLLLGAIYYQLHDYDMCIA 54
           +K G Y QA+     +                          L L   Y +L +Y   + 
Sbjct: 26  FKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVE 85

Query: 55  RNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRK 114
             ++AL L+    +       A     + + A   +   +E+ P    A   +     + 
Sbjct: 86  CCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA 145

Query: 115 GRLNEAAQ 122
              NE  +
Sbjct: 146 KEHNERDR 153

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 55.0 bits (131), Expect = 3e-09
 Identities = 18/130 (13%), Positives = 35/130 (26%), Gaps = 15/130 (11%)

Query: 40  GAIYYQLHDYDMCIA---------------RNEEALRLEPRFAECYGNMANAWKEKGDID 84
           G +Y++   Y   +                  +E+   E      + N+A  + +  +  
Sbjct: 22  GTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYT 81

Query: 85  LAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNL 144
            A+     A+ L             A +       A     + L +NP    A   +   
Sbjct: 82  KAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMC 141

Query: 145 MKAQGLVQEA 154
            K      E 
Sbjct: 142 QKKAKEHNER 151

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 53.4 bits (127), Expect = 9e-09
 Identities = 21/144 (14%), Positives = 45/144 (31%), Gaps = 20/144 (13%)

Query: 341 FNNLAVIYKQQGNYADAISCYNEVLRI---------------DPLAADGLVNRGNTYKEI 385
                 +Y + G Y  A+  Y +++                 +       +N    Y ++
Sbjct: 18  VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL 77

Query: 386 GRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCN 445
              T A++   +A+ +     +       A       E+A   +++ L + P    A   
Sbjct: 78  REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQ 137

Query: 446 LLHTLQCVCSWEDRDR-----MFS 464
           +    +      +RDR     MF 
Sbjct: 138 IFMCQKKAKEHNERDRRTYANMFK 161

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 46.5 bits (109), Expect = 2e-06
 Identities = 17/158 (10%), Positives = 49/158 (31%), Gaps = 20/158 (12%)

Query: 97  RPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYS 156
           +   A       + Y + G+  +A     + ++   +                       
Sbjct: 11  KLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEK---------------- 54

Query: 157 CYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKAL 216
              E+   +     A+ NLA  +++  +  +A++   +A+ L           G     +
Sbjct: 55  ---ESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLM 111

Query: 217 GMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQAD 253
              + A   +++ ++  P N  A   +     +  + +
Sbjct: 112 NEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHN 149

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 62.8 bits (151), Expect = 5e-12
 Identities = 33/175 (18%), Positives = 63/175 (36%), Gaps = 22/175 (12%)

Query: 48  DYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNL 107
           D D+ +   ++ L +    +E   N+ N + +  + ++AI+ Y                 
Sbjct: 12  DADVDLKDVDKILLI----SEDLKNIGNTFFKSQNWEMAIKKYTKV-------------- 53

Query: 108 ASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT 167
               +R    + AA        L P+ +    N+G         Q A    LEAL I P+
Sbjct: 54  ----LRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 109

Query: 168 FAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEA 222
              A    A  +    + ++AL   K+A ++ P        L  V + +   ++ 
Sbjct: 110 NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 164

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.7 bits (143), Expect = 6e-11
 Identities = 18/150 (12%), Positives = 45/150 (30%), Gaps = 21/150 (14%)

Query: 184 DLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP--------- 234
           D +  L+   + + +     +   N+GN +      + AI  Y + ++            
Sbjct: 12  DADVDLKDVDKILLI----SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDA 67

Query: 235 --------NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRV 286
                         N+ +   +      A+    +A+  DP   +A        + +   
Sbjct: 68  DGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEY 127

Query: 287 DEAIQCYNQCLSLQPSHPQALTNLGNIYME 316
           D+A+    +   + P        L  +  +
Sbjct: 128 DQALADLKKAQEIAPEDKAIQAELLKVKQK 157

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.5 bits (132), Expect = 2e-09
 Identities = 31/178 (17%), Positives = 55/178 (30%), Gaps = 22/178 (12%)

Query: 252 ADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLG 311
           AD+ +    + +       E   N+GN        + AI+ Y + L        A  +  
Sbjct: 13  ADVDLKDVDKIL----LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDAD 68

Query: 312 NIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA 371
              ++    P A S                 N+     +  ++  A+    E L IDP  
Sbjct: 69  GAKLQ----PVALSCV--------------LNIGACKLKMSDWQGAVDSCLEALEIDPSN 110

Query: 372 ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSY 429
              L  R   ++ +     A+ D  +A  I P      A L    +     +   K+ 
Sbjct: 111 TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAA 168

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.3 bits (129), Expect = 4e-09
 Identities = 26/157 (16%), Positives = 47/157 (29%), Gaps = 19/157 (12%)

Query: 134 LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYK 193
           + +   N+GN        + A   Y + LR                      +RA     
Sbjct: 26  ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEG------------------SRAAAEDA 67

Query: 194 EAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFG-NLASTYYERGQA 252
           +  KL+P      LN+G     +   Q A+     A++  P+        A  +    + 
Sbjct: 68  DGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEY 127

Query: 253 DMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEA 289
           D A+   K+A    P        L    + +    + 
Sbjct: 128 DQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 164

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.3 bits (129), Expect = 5e-09
 Identities = 21/156 (13%), Positives = 57/156 (36%), Gaps = 16/156 (10%)

Query: 15  YKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEA--------------- 59
           + +  +      ++  L +++L  +G  +++  +++M I +  +                
Sbjct: 9   FPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDAD 68

Query: 60  -LRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLN 118
             +L+P    C  N+     +  D   A+   L A+E+ P+   A    A  +      +
Sbjct: 69  GAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYD 128

Query: 119 EAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEA 154
           +A    ++A  + P      + L  + +     ++ 
Sbjct: 129 QALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 164

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.5 bits (127), Expect = 9e-09
 Identities = 23/137 (16%), Positives = 53/137 (38%), Gaps = 16/137 (11%)

Query: 341 FNNLAVIYKQQGNYADAISCYNE----------------VLRIDPLAADGLVNRGNTYKE 384
             N+   + +  N+  AI  Y +                  ++ P+A   ++N G    +
Sbjct: 30  LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK 89

Query: 385 IGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATC 444
           +     A+   + A+ I P+  +A    A  ++     + A+   K+A  + P+      
Sbjct: 90  MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQA 149

Query: 445 NLLHTLQCVCSWEDRDR 461
            LL   Q + + +D+++
Sbjct: 150 ELLKVKQKIKAQKDKEK 166

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.7 bits (117), Expect = 2e-07
 Identities = 18/114 (15%), Positives = 40/114 (35%)

Query: 7   HQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF 66
            ++ +     +A        +  P+    +L +GA   ++ D+   +    EAL ++P  
Sbjct: 51  TKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN 110

Query: 67  AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEA 120
            +     A  W+   + D A+     A E+ P      + L     +     + 
Sbjct: 111 TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 164

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.1 bits (105), Expect = 7e-06
 Identities = 19/171 (11%), Positives = 53/171 (30%), Gaps = 23/171 (13%)

Query: 82  DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNL 141
           D D+ ++     + +    ++   N+ + + +      A +   +               
Sbjct: 12  DADVDLKDVDKILLI----SEDLKNIGNTFFKSQNWEMAIKKYTKV-------------- 53

Query: 142 GNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPT 201
                       A +   +  ++QP       N+    ++  D   A+    EA+++ P+
Sbjct: 54  ----LRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 109

Query: 202 FPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQ 251
              A       ++ L    +A+   ++A +  P +      L     +   
Sbjct: 110 NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA 160

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.7 bits (143), Expect = 5e-11
 Identities = 30/141 (21%), Positives = 51/141 (36%), Gaps = 2/141 (1%)

Query: 32  RTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYL 91
           R + L      Y++  DY+  I    +A+ L P  A  YGN + A+        A+    
Sbjct: 9   RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDAT 68

Query: 92  VAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKA--QG 149
            AIEL   +   +   A++ M  G+   A +     + + P   DA        K   Q 
Sbjct: 69  RAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQK 128

Query: 150 LVQEAYSCYLEALRIQPTFAI 170
             + A +       +  +  I
Sbjct: 129 AFERAIAGDEHKRSVVDSLDI 149

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.8 bits (138), Expect = 2e-10
 Identities = 27/131 (20%), Positives = 44/131 (33%), Gaps = 2/131 (1%)

Query: 101 ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLE 160
           A+     A+ Y +      A +   QA+ LNP     + N             A      
Sbjct: 10  AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 69

Query: 161 ALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMP- 219
           A+ +   +   +   A   M  G    AL+ Y+  VK+KP   DA +      K +    
Sbjct: 70  AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA 129

Query: 220 -QEAIMCYQRA 229
            + AI   +  
Sbjct: 130 FERAIAGDEHK 140

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (132), Expect = 1e-09
 Identities = 22/132 (16%), Positives = 48/132 (36%), Gaps = 2/132 (1%)

Query: 5   LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64
            A+  +K+  Y+ A++  +   E NP            Y +   Y   +     A+ L+ 
Sbjct: 16  QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK 75

Query: 65  RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASA--YMRKGRLNEAAQ 122
           ++ + Y   A +    G    A+R Y   ++++P+  DA          +++     A  
Sbjct: 76  KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA 135

Query: 123 CCRQALALNPLL 134
                 ++   L
Sbjct: 136 GDEHKRSVVDSL 147

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 2e-08
 Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 1/112 (0%)

Query: 204 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQA 262
           +      N Y      + AI  Y +A++  P NAI +GN +  Y        A+    +A
Sbjct: 11  EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 70

Query: 263 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIY 314
           I  D ++++ Y     +   +G+   A++ Y   + ++P    A        
Sbjct: 71  IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN 122

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 2e-08
 Identities = 26/141 (18%), Positives = 53/141 (37%), Gaps = 4/141 (2%)

Query: 136 DAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEA 195
           +      N        + A   Y +A+ + P+ AI + N +  ++ +     AL     A
Sbjct: 11  EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 70

Query: 196 VKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMA 255
           ++L   +   Y        ALG  + A+  Y+  V+ +P+       A   Y+     + 
Sbjct: 71  IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKD----AKMKYQECNKIVK 126

Query: 256 ILYYKQAIGCDPRFLEAYNNL 276
              +++AI  D       ++L
Sbjct: 127 QKAFERAIAGDEHKRSVVDSL 147

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 2e-08
 Identities = 30/149 (20%), Positives = 58/149 (38%), Gaps = 2/149 (1%)

Query: 67  AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQ 126
           AE     AN + +  D + AI++Y  AIEL P+ A  + N + AY+R      A     +
Sbjct: 10  AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 69

Query: 127 ALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGL--FMESGD 184
           A+ L+   +  +        A G  + A   Y   ++++P    A          ++   
Sbjct: 70  AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA 129

Query: 185 LNRALQYYKEAVKLKPTFPDAYLNLGNVY 213
             RA+   +    +  +     + + + Y
Sbjct: 130 FERAIAGDEHKRSVVDSLDIESMTIEDEY 158

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (121), Expect = 5e-08
 Identities = 24/142 (16%), Positives = 44/142 (30%), Gaps = 5/142 (3%)

Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 330
           E      N        + AI+ Y+Q + L PS+     N    Y+       A       
Sbjct: 11  EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 70

Query: 331 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 390
           + +       +   A      G +  A+  Y  V+++ P   D  +      K + +   
Sbjct: 71  IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ--- 127

Query: 391 AIQDYIRAITIRPTMAEAHANL 412
             + + RAI           +L
Sbjct: 128 --KAFERAIAGDEHKRSVVDSL 147

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (120), Expect = 6e-08
 Identities = 23/106 (21%), Positives = 44/106 (41%)

Query: 341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAIT 400
               A  Y +  +Y +AI  Y++ + ++P  A    NR   Y        A+ D  RAI 
Sbjct: 13  LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE 72

Query: 401 IRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
           +     + +   A++    G   AA++ Y+  + ++P   +A    
Sbjct: 73  LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKY 118

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 5e-07
 Identities = 26/137 (18%), Positives = 49/137 (35%), Gaps = 3/137 (2%)

Query: 169 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQR 228
           A      A  + ++ D   A+++Y +A++L P+    Y N    Y        A+    R
Sbjct: 10  AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 69

Query: 229 AVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDV--GR 285
           A++        +   A++    G+   A+  Y+  +   P   +A        K V    
Sbjct: 70  AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA 129

Query: 286 VDEAIQCYNQCLSLQPS 302
            + AI       S+  S
Sbjct: 130 FERAIAGDEHKRSVVDS 146

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 8e-07
 Identities = 22/133 (16%), Positives = 46/133 (34%), Gaps = 2/133 (1%)

Query: 305 QALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEV 364
           + L    N Y +      A  +Y   + +    +  + N ++ Y +   Y  A+      
Sbjct: 11  EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 70

Query: 365 LRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYK--DSGHV 422
           + +D     G   R  +   +G+   A++DY   + ++P   +A        K       
Sbjct: 71  IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAF 130

Query: 423 EAAIKSYKQALLL 435
           E AI   +    +
Sbjct: 131 ERAIAGDEHKRSV 143

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 55.8 bits (133), Expect = 1e-09
 Identities = 24/147 (16%), Positives = 45/147 (30%), Gaps = 18/147 (12%)

Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 330
                 GN       ++EAI  Y + L       +    +     +   +          
Sbjct: 18  FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC-------- 69

Query: 331 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 390
                       NLA  Y +  +Y  AI   ++VL+ID      L   G      G + +
Sbjct: 70  ----------NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEE 119

Query: 391 AIQDYIRAITIRPTMAEAHANLASAYK 417
           A ++  +A ++ P   +   +      
Sbjct: 120 AKENLYKAASLNPNNLDIRNSYELCVN 146

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 55.8 bits (133), Expect = 1e-09
 Identities = 24/151 (15%), Positives = 42/151 (27%), Gaps = 18/151 (11%)

Query: 67  AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQ 126
           A       N + +K +I+ AI  Y  A++   +  +    +                   
Sbjct: 17  AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD---------------- 60

Query: 127 ALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLN 186
                 + +  + NL           +A     + L+I      A   L    M  G L 
Sbjct: 61  --KKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLE 118

Query: 187 RALQYYKEAVKLKPTFPDAYLNLGNVYKALG 217
            A +   +A  L P   D   +       L 
Sbjct: 119 EAKENLYKAASLNPNNLDIRNSYELCVNKLK 149

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 54.6 bits (130), Expect = 3e-09
 Identities = 26/142 (18%), Positives = 48/142 (33%), Gaps = 25/142 (17%)

Query: 192 YKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN---------------- 235
            + A  +K          GN +       EAI+ Y+ A+    +                
Sbjct: 14  VQSAFDIK--------EEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNI 65

Query: 236 -AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 294
                 NLA+ Y +      AI +  + +  D   ++A   LG A    G ++EA +   
Sbjct: 66  EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLY 125

Query: 295 QCLSLQPSHPQALTNLGNIYME 316
           +  SL P++     +      +
Sbjct: 126 KAASLNPNNLDIRNSYELCVNK 147

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 52.3 bits (124), Expect = 2e-08
 Identities = 22/134 (16%), Positives = 35/134 (26%), Gaps = 17/134 (12%)

Query: 169 AIAWSNLAGLFMESGDLNRALQYYKE----------------AVKLKPTFPDAYLNLGNV 212
           A         F +  ++N A+  YKE                  K K       LNL   
Sbjct: 17  AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC 76

Query: 213 YKALGMPQ-EAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLE 271
           Y              +     + N  A   L       G  + A     +A   +P  L+
Sbjct: 77  YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 136

Query: 272 AYNNLGNALKDVGR 285
             N+    +  +  
Sbjct: 137 IRNSYELCVNKLKE 150

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 50.4 bits (119), Expect = 8e-08
 Identities = 17/128 (13%), Positives = 38/128 (29%), Gaps = 16/128 (12%)

Query: 8   QMYKSGSYKQALEH----------------SNSVYERNPLRTDNLLLLGAIYYQLHDYDM 51
           + +K     +A+                     + ++  +     L L   Y +  DY  
Sbjct: 26  EFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPK 85

Query: 52  CIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAY 111
            I    + L+++    +    +  A    G ++ A      A  L PN  D  ++     
Sbjct: 86  AIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 145

Query: 112 MRKGRLNE 119
            +     +
Sbjct: 146 NKLKEARK 153

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 48.1 bits (113), Expect = 6e-07
 Identities = 19/127 (14%), Positives = 37/127 (29%), Gaps = 16/127 (12%)

Query: 341 FNNLAVIYKQQGNYADAISCYNEVLRIDP----------------LAADGLVNRGNTYKE 384
                  + ++    +AI  Y E L                    +     +N    Y +
Sbjct: 20  IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNK 79

Query: 385 IGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATC 444
                 AI    + + I     +A   L  A    G +E A ++  +A  L P+  +   
Sbjct: 80  NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRN 139

Query: 445 NLLHTLQ 451
           +    + 
Sbjct: 140 SYELCVN 146

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 43.5 bits (101), Expect = 2e-05
 Identities = 21/129 (16%), Positives = 45/129 (34%), Gaps = 16/129 (12%)

Query: 34  DNLLLLGAIYYQLHDYD----------------MCIARNEEALRLEPRFAECYGNMANAW 77
            ++   G  +++ ++ +                          + +     C  N+A  +
Sbjct: 18  FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCY 77

Query: 78  KEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDA 137
            +  D   AI +    +++  N   A   L  A M  G L EA +   +A +LNP  +D 
Sbjct: 78  NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI 137

Query: 138 HSNLGNLMK 146
            ++    + 
Sbjct: 138 RNSYELCVN 146

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 38.5 bits (88), Expect = 8e-04
 Identities = 25/159 (15%), Positives = 50/159 (31%), Gaps = 19/159 (11%)

Query: 95  ELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEA 154
           E +   A       + + +K  +NEA    ++AL                        E 
Sbjct: 11  EEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH------------------TEE 52

Query: 155 YSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYK 214
           +   +   + +        NLA  + ++ D  +A+ +  + +K+      A   LG    
Sbjct: 53  WDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANM 112

Query: 215 ALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQA 252
             G  +EA     +A    P N     +      +  +A
Sbjct: 113 YFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEA 151

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.9 bits (128), Expect = 2e-09
 Identities = 23/114 (20%), Positives = 46/114 (40%)

Query: 101 ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLE 160
            +      +  +  G +++A QC  +A+ L+P     +SN       +G  Q+AY    +
Sbjct: 3   VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 62

Query: 161 ALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYK 214
            + ++P +   +S  A           A + Y+E +K +   P     L N+  
Sbjct: 63  TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 4e-09
 Identities = 21/111 (18%), Positives = 40/111 (36%)

Query: 270 LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKA 329
           +      GN    VG +D+A+QCY++ + L P +    +N    Y +      A      
Sbjct: 3   VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 62

Query: 330 TLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGN 380
           T+ +       ++  A   +    + +A   Y E L+ +           N
Sbjct: 63  TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 113

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (125), Expect = 5e-09
 Identities = 25/111 (22%), Positives = 45/111 (40%)

Query: 34  DNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVA 93
           + L   G     + + D  +    EA++L+P     Y N + A+ +KGD   A       
Sbjct: 4   NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKT 63

Query: 94  IELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNL 144
           ++L+P++   +S  A+A     R  EA +   + L            L N+
Sbjct: 64  VDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 114

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 3e-08
 Identities = 24/106 (22%), Positives = 46/106 (43%)

Query: 341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAIT 400
                      GN  DA+ CY+E +++DP       NR   Y + G    A +D  + + 
Sbjct: 6   LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD 65

Query: 401 IRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
           ++P   + ++  A+A +     E A ++Y++ L    + P+    L
Sbjct: 66  LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGL 111

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 2e-07
 Identities = 19/109 (17%), Positives = 37/109 (33%)

Query: 5   LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64
             ++    G+   AL+  +   + +P          A Y +  DY        + + L+P
Sbjct: 9   KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP 68

Query: 65  RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMR 113
            + + Y   A A +     + A R Y   ++   N       L +   R
Sbjct: 69  DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEAR 117

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (107), Expect = 1e-06
 Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 1/107 (0%)

Query: 174 NLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR 233
                 +  G+++ ALQ Y EA+KL P     Y N    Y   G  Q+A     + V  +
Sbjct: 8   EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK 67

Query: 234 PNAIAFGN-LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNA 279
           P+     +  A+      + + A   Y++ +  +    +    L N 
Sbjct: 68  PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 114

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 5e-06
 Identities = 26/107 (24%), Positives = 46/107 (42%)

Query: 72  NMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALN 131
              N     G+ID A++ Y  AI+L P+    +SN ++AY +KG   +A +   + + L 
Sbjct: 8   EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK 67

Query: 132 PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGL 178
           P     +S     ++     +EA   Y E L+ +         L  +
Sbjct: 68  PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 114

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 1e-05
 Identities = 25/101 (24%), Positives = 46/101 (45%)

Query: 135 VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKE 194
           V+     GN   + G + +A  CY EA+++ P   + +SN +  + + GD  +A +   +
Sbjct: 3   VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 62

Query: 195 AVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
            V LKP +   Y       + L   +EA   Y+  ++   N
Sbjct: 63  TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN 103

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 1e-05
 Identities = 20/108 (18%), Positives = 33/108 (30%), Gaps = 34/108 (31%)

Query: 241 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYN-------------------------- 274
              +     G  D A+  Y +AI  DP     Y+                          
Sbjct: 8   EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK 67

Query: 275 --------NLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIY 314
                       AL+ + R +EA + Y + L  + ++PQ    L N+ 
Sbjct: 68  PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.5 bits (135), Expect = 5e-09
 Identities = 36/274 (13%), Positives = 70/274 (25%), Gaps = 26/274 (9%)

Query: 170 IAW--SNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLN--------------LGNVY 213
           I W  SN      ++    R +  Y++ + +    PD +                 G++ 
Sbjct: 15  IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMN 74

Query: 214 KALGMPQEAIMCYQRAVQTRP--NAIAFGNLASTYYERGQADMAILYYKQAIG-CDPRFL 270
            A     EA   Y+RA+ T    N + +   A     R + +     Y + +   D    
Sbjct: 75  NAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT 134

Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 330
             Y       +    +      + +      +          +    +   + A      
Sbjct: 135 LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFEL 194

Query: 331 LAVTTGLSAPFNN-LAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTY----KEI 385
                G    +               +    +  VL    L  +        +      I
Sbjct: 195 GLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI 254

Query: 386 GRVTDAIQDYIRAITIRPTMAEAH--ANLASAYK 417
           G +   ++   R  T      E    A L   YK
Sbjct: 255 GDLASILKVEKRRFTAFREEYEGKETALLVDRYK 288

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 54.1 bits (129), Expect = 6e-09
 Identities = 18/131 (13%), Positives = 32/131 (24%), Gaps = 12/131 (9%)

Query: 102 DAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEA 161
            A           GR  +A++    AL      V                         A
Sbjct: 12  VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQF------------VEPFA 59

Query: 162 LRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQE 221
             +     +A +  A   +  G  +  +   +      P     +  L   Y       +
Sbjct: 60  TALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSD 119

Query: 222 AIMCYQRAVQT 232
           A+  Y+R   T
Sbjct: 120 ALGAYRRVKTT 130

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 50.3 bits (119), Expect = 1e-07
 Identities = 18/124 (14%), Positives = 26/124 (20%), Gaps = 11/124 (8%)

Query: 204 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAI 263
            A    G    A G  ++A      A++     +                        A 
Sbjct: 12  VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDL-----------RDFQFVEPFAT 60

Query: 264 GCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAA 323
                 + A+     A    GR    I          P      T L   Y   +    A
Sbjct: 61  ALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDA 120

Query: 324 ASYY 327
              Y
Sbjct: 121 LGAY 124

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (119), Expect = 2e-08
 Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 7/85 (8%)

Query: 31  LRTDNLLLLGAIYYQLHDYDMCIARNEEALRL-------EPRFAECYGNMANAWKEKGDI 83
           L  ++   LG + Y   DY       E+ALR                  ++ A  ++GD+
Sbjct: 3   LTAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDL 62

Query: 84  DLAIRYYLVAIELRPNFADAWSNLA 108
           D A+      +EL P    A  NL 
Sbjct: 63  DKALLLTKKLLELDPEHQRANGNLK 87

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (113), Expect = 1e-07
 Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 7/83 (8%)

Query: 241 NLASTYYERGQADMAILYYKQAI-------GCDPRFLEAYNNLGNALKDVGRVDEAIQCY 293
            L    Y         L+ +QA+             +   + L  A+   G +D+A+   
Sbjct: 10  ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLT 69

Query: 294 NQCLSLQPSHPQALTNLGNIYME 316
            + L L P H +A  NL      
Sbjct: 70  KKLLELDPEHQRANGNLKYFEYI 92

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (110), Expect = 4e-07
 Identities = 13/89 (14%), Positives = 29/89 (32%), Gaps = 8/89 (8%)

Query: 68  ECYGNMANAWKEKGDIDLAIRYYLVAIEL-------RPNFADAWSNLASAYMRKGRLNEA 120
           + +  +      + D      +   A+           +       L+ A  ++G L++A
Sbjct: 7   DSF-ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKA 65

Query: 121 AQCCRQALALNPLLVDAHSNLGNLMKAQG 149
               ++ L L+P    A+ NL        
Sbjct: 66  LLLTKKLLELDPEHQRANGNLKYFEYIMA 94

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 5e-07
 Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 7/92 (7%)

Query: 133 LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI-------QPTFAIAWSNLAGLFMESGDL 185
           L  +    LG +   +           +ALR                  L+    + GDL
Sbjct: 3   LTAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDL 62

Query: 186 NRALQYYKEAVKLKPTFPDAYLNLGNVYKALG 217
           ++AL   K+ ++L P    A  NL      + 
Sbjct: 63  DKALLLTKKLLELDPEHQRANGNLKYFEYIMA 94

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (108), Expect = 8e-07
 Identities = 11/82 (13%), Positives = 22/82 (26%), Gaps = 7/82 (8%)

Query: 343 NLAVIYKQQGNYADAISCYNEVLRID-------PLAADGLVNRGNTYKEIGRVTDAIQDY 395
            L  +   + +Y        + LR               L        + G +  A+   
Sbjct: 10  ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLT 69

Query: 396 IRAITIRPTMAEAHANLASAYK 417
            + + + P    A+ NL     
Sbjct: 70  KKLLELDPEHQRANGNLKYFEY 91

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 1e-05
 Identities = 15/83 (18%), Positives = 22/83 (26%), Gaps = 7/83 (8%)

Query: 101 ADAWSNLASAYMRKGRLNEAAQCCRQALAL-------NPLLVDAHSNLGNLMKAQGLVQE 153
           A+    L      +           QAL             V     L   +  QG + +
Sbjct: 5   AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDK 64

Query: 154 AYSCYLEALRIQPTFAIAWSNLA 176
           A     + L + P    A  NL 
Sbjct: 65  ALLLTKKLLELDPEHQRANGNLK 87

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 3e-04
 Identities = 14/89 (15%), Positives = 28/89 (31%), Gaps = 10/89 (11%)

Query: 169 AIAWSNLAGLFMESGDLNRALQYYKEAVKL-------KPTFPDAYLNLGNVYKALGMPQE 221
           A     L  +     D      + ++A++                  L       G   +
Sbjct: 5   AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDK 64

Query: 222 AIMCYQRAVQTRPN-AIAFGNLASTYYER 249
           A++  ++ ++  P    A GNL   Y+E 
Sbjct: 65  ALLLTKKLLELDPEHQRANGNLK--YFEY 91

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 5e-04
 Identities = 14/82 (17%), Positives = 21/82 (25%), Gaps = 7/82 (8%)

Query: 5  LAHQMYKSGSYKQALEHSNSVYER-------NPLRTDNLLLLGAIYYQLHDYDMCIARNE 57
          L    Y    Y            +          +   L  L    YQ  D D  +   +
Sbjct: 11 LGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTK 70

Query: 58 EALRLEPRFAECYGNMANAWKE 79
          + L L+P      GN+      
Sbjct: 71 KLLELDPEHQRANGNLKYFEYI 92

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 0.001
 Identities = 14/86 (16%), Positives = 22/86 (25%), Gaps = 7/86 (8%)

Query: 370 LAADGLVNRGNTYKEIGRVTDAIQDY-------IRAITIRPTMAEAHANLASAYKDSGHV 422
           L A+     G                                       L+ A    G +
Sbjct: 3   LTAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDL 62

Query: 423 EAAIKSYKQALLLRPDFPEATCNLLH 448
           + A+   K+ L L P+   A  NL +
Sbjct: 63  DKALLLTKKLLELDPEHQRANGNLKY 88

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 0.002
 Identities = 13/89 (14%), Positives = 15/89 (16%), Gaps = 7/89 (7%)

Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSL-------QPSHPQALTNLGNIYMEWNMLPAA 323
           E    LG                 Q L                L  L     +   L  A
Sbjct: 6   EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKA 65

Query: 324 ASYYKATLAVTTGLSAPFNNLAVIYKQQG 352
               K  L +         NL        
Sbjct: 66  LLLTKKLLELDPEHQRANGNLKYFEYIMA 94

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (120), Expect = 8e-08
 Identities = 18/156 (11%), Positives = 39/156 (25%), Gaps = 19/156 (12%)

Query: 67  AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQ 126
           +         + ++G    A+  Y   +      +   +                    +
Sbjct: 13  STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNE-------------------E 53

Query: 127 ALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLN 186
           A     L + +H NL            A     +AL +        S      +   D  
Sbjct: 54  AQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFE 113

Query: 187 RALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEA 222
            A   +++ ++L P    A   L    + +      
Sbjct: 114 LARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 2e-07
 Identities = 16/132 (12%), Positives = 36/132 (27%), Gaps = 15/132 (11%)

Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQC---------------LSLQPSHPQALTNLGNIYM 315
                 G      G+  +A+  Y +                   Q     +  NL   ++
Sbjct: 14  TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL 73

Query: 316 EWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGL 375
           +     AA       L + +      +     +    ++  A + + +VL++ P      
Sbjct: 74  KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAK 133

Query: 376 VNRGNTYKEIGR 387
                  + I R
Sbjct: 134 TQLAVCQQRIRR 145

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 2e-07
 Identities = 24/131 (18%), Positives = 42/131 (32%), Gaps = 16/131 (12%)

Query: 204 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRP----------------NAIAFGNLASTYY 247
                 G VY   G  ++A++ Y++ V                       +  NLA  + 
Sbjct: 14  TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL 73

Query: 248 ERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQAL 307
           +      AI    +A+  D    +  +  G A   V   + A   + + L L P++  A 
Sbjct: 74  KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAK 133

Query: 308 TNLGNIYMEWN 318
           T L        
Sbjct: 134 TQLAVCQQRIR 144

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 9e-07
 Identities = 20/137 (14%), Positives = 43/137 (31%), Gaps = 16/137 (11%)

Query: 169 AIAWSNLAGLFMESGDLNRALQYYKEAV---------------KLKPTFPDAYLNLGNVY 213
           +        ++ + G   +AL  YK+ V               K +     ++LNL   +
Sbjct: 13  STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 72

Query: 214 KALGMPQEAIMCYQRAVQTRPNAIAFGN-LASTYYERGQADMAILYYKQAIGCDPRFLEA 272
             L     AI    +A++   N     +     +      ++A   +++ +   P    A
Sbjct: 73  LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA 132

Query: 273 YNNLGNALKDVGRVDEA 289
              L    + + R    
Sbjct: 133 KTQLAVCQQRIRRQLAR 149

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 5e-06
 Identities = 28/128 (21%), Positives = 44/128 (34%), Gaps = 15/128 (11%)

Query: 10  YKSGSYKQALEH---------------SNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIA 54
           +K G YKQAL                 +    +   LR  + L L   + +L  +   I 
Sbjct: 24  FKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIE 83

Query: 55  RNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRK 114
              +AL L+    +       A     D +LA   +   ++L PN   A + LA    R 
Sbjct: 84  SCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRI 143

Query: 115 GRLNEAAQ 122
            R     +
Sbjct: 144 RRQLAREK 151

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 1e-05
 Identities = 21/136 (15%), Positives = 45/136 (33%), Gaps = 15/136 (11%)

Query: 341 FNNLAVIYKQQGNYADAISCYN---------------EVLRIDPLAADGLVNRGNTYKEI 385
                 +Y ++G Y  A+  Y                E  +   L     +N    + ++
Sbjct: 16  VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL 75

Query: 386 GRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCN 445
              + AI+   +A+ +     +  +    A+      E A   +++ L L P+   A   
Sbjct: 76  QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQ 135

Query: 446 LLHTLQCVCSWEDRDR 461
           L    Q +     R++
Sbjct: 136 LAVCQQRIRRQLAREK 151

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 3e-05
 Identities = 23/131 (17%), Positives = 39/131 (29%), Gaps = 15/131 (11%)

Query: 39  LGAIYYQLHDYDMCIA---------------RNEEALRLEPRFAECYGNMANAWKEKGDI 83
            G +Y++   Y   +                 NEEA + +      + N+A    +    
Sbjct: 19  RGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAF 78

Query: 84  DLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGN 143
             AI     A+EL  N     S    A++       A    ++ L L P    A + L  
Sbjct: 79  SAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAV 138

Query: 144 LMKAQGLVQEA 154
             +        
Sbjct: 139 CQQRIRRQLAR 149

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 22/158 (13%), Positives = 51/158 (32%), Gaps = 20/158 (12%)

Query: 97  RPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYS 156
           +   +       + Y ++G+  +A    ++ ++         +                 
Sbjct: 9   KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNE---------------- 52

Query: 157 CYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKAL 216
              EA + Q     +  NLA   ++    + A++   +A++L           G  + A+
Sbjct: 53  ---EAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAV 109

Query: 217 GMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQAD 253
              + A   +Q+ +Q  P N  A   LA       +  
Sbjct: 110 NDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQL 147

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 44.0 bits (102), Expect = 1e-05
 Identities = 24/185 (12%), Positives = 52/185 (28%), Gaps = 46/185 (24%)

Query: 204 DAYLNLGNVYKAL--GMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQ 261
            AYL L +  + L  G   EA    +RA++                         +  ++
Sbjct: 8   GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHT---------------------MPPEE 46

Query: 262 AIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLP 321
           A          +  L  AL  +   DEA+   ++ L       +   + G +++      
Sbjct: 47  AFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISA---- 102

Query: 322 AAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNT 381
                                + A+     G  A+A+  + +V+ +          +   
Sbjct: 103 -------------------VYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM 143

Query: 382 YKEIG 386
            +   
Sbjct: 144 MEVAI 148

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 43.6 bits (101), Expect = 2e-05
 Identities = 21/145 (14%), Positives = 41/145 (28%), Gaps = 25/145 (17%)

Query: 98  PNFADAWSNLASA--YMRKGRLNEAAQCCRQALALNPLLVD------------AHSNLGN 143
                A+  L+ A   +  G  +EAA  CR+A+ ++  +               H+ L  
Sbjct: 4   KEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAE 63

Query: 144 LMKAQGLVQEAYSCYLEALRIQPTFAIAWS-----------NLAGLFMESGDLNRALQYY 192
            +       EA     +AL                      + A      G    A+  +
Sbjct: 64  ALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEF 123

Query: 193 KEAVKLKPTFPDAYLNLGNVYKALG 217
           K+ V++             + +   
Sbjct: 124 KKVVEMIEERKGETPGKERMMEVAI 148

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 43.2 bits (100), Expect = 2e-05
 Identities = 18/171 (10%), Positives = 47/171 (27%), Gaps = 35/171 (20%)

Query: 271 EAYNNLGNALKDV--GRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYK 328
            AY  L +A + +  G  DEA     + + +  + P         +  +           
Sbjct: 8   GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFC---------- 57

Query: 329 ATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLV-----------N 377
                          LA       ++ +A+   ++ L       +              +
Sbjct: 58  ------------HAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYS 105

Query: 378 RGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKS 428
           R      +GR  +A+ ++ + + +               + +    A + +
Sbjct: 106 RALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIAQLGA 156

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 40.9 bits (94), Expect = 1e-04
 Identities = 20/163 (12%), Positives = 34/163 (20%), Gaps = 29/163 (17%)

Query: 136 DAHSNL--GNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYK 193
            A+  L         G   EA +    A+ I  T     +                    
Sbjct: 8   GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAF------------------- 48

Query: 194 EAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLAS-----TYYE 248
                       +  L      L    EA+    +A+                     Y 
Sbjct: 49  ---DHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYS 105

Query: 249 RGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQ 291
           R  A   +    +A+    + +E             R+ E   
Sbjct: 106 RALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAI 148

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 39.7 bits (91), Expect = 4e-04
 Identities = 18/138 (13%), Positives = 33/138 (23%), Gaps = 23/138 (16%)

Query: 35  NLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAE------------CYGNMANAWKEKGD 82
             L          +YD   A    A+ +                  C+  +A A      
Sbjct: 11  LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS 70

Query: 83  IDLAIRYYLVAIELRPNFADAWS-----------NLASAYMRKGRLNEAAQCCRQALALN 131
            D A+     A+       +              + A A    GR  EA    ++ + + 
Sbjct: 71  FDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 130

Query: 132 PLLVDAHSNLGNLMKAQG 149
                       +M+   
Sbjct: 131 EERKGETPGKERMMEVAI 148

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 145

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 38.7 bits (88), Expect = 8e-04
 Identities = 27/139 (19%), Positives = 50/139 (35%), Gaps = 21/139 (15%)

Query: 106 NLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLM----------KAQGLVQEAY 155
           +  + + R     +  Q        NPL  D  +  G ++           A+ ++QEA 
Sbjct: 2   DTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAI 61

Query: 156 SCYLEALRIQPTFAIAWSNLAGLFME-----------SGDLNRALQYYKEAVKLKPTFPD 204
           + + EAL I P    A   +   +               + + A Q++++AV  +P    
Sbjct: 62  TKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 121

Query: 205 AYLNLGNVYKALGMPQEAI 223
              +L    KA  +  EA 
Sbjct: 122 YLKSLEMTAKAPQLHAEAY 140

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 145

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 21/160 (13%), Positives = 42/160 (26%), Gaps = 18/160 (11%)

Query: 275 NLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT 334
           +       +   ++  Q         P     LT  G + +E +   + +   +      
Sbjct: 2   DTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAI 61

Query: 335 TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQD 394
           T             +      +A + +                  +  +       A Q 
Sbjct: 62  TKFEEALLIDPKKDEAVWCIGNAYTSFAF-------------LTPDETEAKHNFDLATQF 108

Query: 395 YIRAITIRPTMAEAHANLASAYKDSG-HVEAAIKSYKQAL 433
           + +A+  +P       +L    K    H EA    YKQ L
Sbjct: 109 FQQAVDEQPDNTHYLKSLEMTAKAPQLHAEA----YKQGL 144

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.7 bits (85), Expect = 0.002
 Identities = 5/56 (8%), Positives = 13/56 (23%), Gaps = 1/56 (1%)

Query: 78  KEKGDIDLAIRYYLVAIELRP-NFADAWSNLASAYMRKGRLNEAAQCCRQALALNP 132
            +  D  L ++      +       +    L     + G  + A +          
Sbjct: 49  TDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 104

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	887
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.94
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.93
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.88
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.87
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.85
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.84
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.81
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.8
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.79
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.78
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.62
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.62
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.61
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.48
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.41
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.4
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.4
d2iw1a1	370	Lipopolysaccharide core biosynthesis protein RfaG	99.38
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.36
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.35
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.34
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.31
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.3
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.28
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.23
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.21
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.17
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.12
d2bfwa1	196	Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI	99.11
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.1
d2f9fa1	166	First mannosyl transferase WbaZ {Archaeoglobus ful	99.07
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.07
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.06
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.06
d1rzua_	477	Glycogen synthase 1, GlgA {Agrobacterium tumefacie	99.05
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.04
d2bisa1	437	Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI	99.0
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.96
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.96
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.92
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.91
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.9
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.89
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.84
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.67
d1uqta_	456	Trehalose-6-phosphate synthase, OtsA {Escherichia	98.66
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.57
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.55
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.44
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.36
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.33
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.25
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.25
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	98.2
d2c1xa1	450	UDP glucose:flavonoid 3-o-glucosyltransferase {Gra	97.7
d1rrva_	401	TDP-vancosaminyltransferase GftD {Amycolatopsis or	97.62
d2pq6a1	473	(Iso)flavonoid glycosyltransferase {Medicago trunc	97.61
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.42
d1iira_	401	UDP-glucosyltransferase GtfB {Amycolatopsis orient	97.36
d1pn3a_	391	TDP-epi-vancosaminyltransferase GtfA {Amycolatopsi	97.19
d2vcha1	471	Hydroquinone glucosyltransferase {Thale cress (Ara	97.18
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.15
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.11
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.08
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	96.97
d2acva1	461	Triterpene UDP-glucosyl transferase UGT71G1 {Medic	96.42
d1v4va_	373	UDP-N-acetylglucosamine 2-epimerase {Thermus therm	96.35
d1o6ca_	377	UDP-N-acetylglucosamine 2-epimerase {Bacillus subt	96.23
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	95.56
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	95.08
d1f0ka_	351	Peptidoglycan biosynthesis glycosyltransferase Mur	93.61
d1pswa_	348	ADP-heptose LPS heptosyltransferase II {Escherichi	93.13
d1f6da_	376	UDP-N-acetylglucosamine 2-epimerase {Escherichia c	91.88

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-37  Score=293.58  Aligned_cols=387  Identities=35%  Similarity=0.573  Sum_probs=253.0

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Q ss_conf             36789999863799999999999985199864699999999986099999999999998419993889999999999909
Q 002729            2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG   81 (887)
Q Consensus         2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g   81 (887)
                      ++.+|..+++.|+|++|+..++++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|
T Consensus         2 ll~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g   81 (388)
T d1w3ba_           2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG   81 (388)
T ss_dssp             CCTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf             69999999986999999999999998689989999999999998699999999999999859998999999999964200


Q ss_pred             CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             99999999999983099949999999999998399699999999999719998999999999999839958999999999
Q 002729           82 DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEA  161 (887)
Q Consensus        82 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  161 (887)
                      ++++|+..+..+.+..+................+....+...........+................+....+...+.+.
T Consensus        82 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (388)
T d1w3ba_          82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA  161 (388)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             02222222221211222222222222222222222222222211122222222222222222221100013567888874


Q ss_pred             HHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf             86299809999999999997299889999999999509998789988999999859938999999999961998468963
Q 002729          162 LRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGN  241 (887)
Q Consensus       162 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  241 (887)
                      +...|.....+..++..+...+++++|...++++++.+|++..++..++.++...|++++|+..+++.....+       
T Consensus       162 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-------  234 (388)
T d1w3ba_         162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-------  234 (388)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-------
T ss_pred             HCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-------
T ss_conf             0258610689986363010247199999999999984946499999971552200529999999998577755-------


Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf             99999983995999999999982299969999989999997699899999999998509999688875999999728926
Q 002729          242 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLP  321 (887)
Q Consensus       242 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~  321 (887)
                                                .....+..+|.++...|++++|+..++++++..|+++.++..+|.++...|+++
T Consensus       235 --------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  288 (388)
T d1w3ba_         235 --------------------------NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVA  288 (388)
T ss_dssp             --------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHH
T ss_pred             --------------------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
T ss_conf             --------------------------479999999999998789999999999999849998999999999999748799


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf             99999999983168991567439999998299999999999998109998889999999999909989999999999950
Q 002729          322 AAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI  401 (887)
Q Consensus       322 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  401 (887)
                      +|+..++.+....|.....+..++.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|++++++
T Consensus       289 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l  368 (388)
T d1w3ba_         289 EAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI  368 (388)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             99999986540487300101579999998789999999999999868898999999999999859999999999999970


Q ss_pred             CCCCHHHHHHHHHHHHHCCC
Q ss_conf             99929999999999996799
Q 002729          402 RPTMAEAHANLASAYKDSGH  421 (887)
Q Consensus       402 ~p~~~~~~~~la~~~~~~g~  421 (887)
                      +|+++.++.++|.+|.++||
T Consensus       369 ~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         369 SPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             CTTCHHHHHHHHHHHHHTCC
T ss_pred             CCCCHHHHHHHHHHHHHCCC
T ss_conf             99989999999999998589

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.1e-37  Score=289.67  Aligned_cols=384  Identities=35%  Similarity=0.559  Sum_probs=303.7

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH
Q ss_conf             99999999099999999999998309994999999999999839969999999999971999899999999999983995
Q 002729           72 NMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLV  151 (887)
Q Consensus        72 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~  151 (887)
                      .+|..+++.|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++.+|++..++..+|.++...|++
T Consensus         4 ~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~   83 (388)
T d1w3ba_           4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL   83 (388)
T ss_dssp             THHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
T ss_conf             99999998699999999999999868998999999999999869999999999999985999899999999996420002


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             89999999998629980999999999999729988999999999950999878998899999985993899999999996
Q 002729          152 QEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ  231 (887)
Q Consensus       152 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  231 (887)
                      ++|+..+..+.+..+.....................+...........+................+....+...+.+.+.
T Consensus        84 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (388)
T d1w3ba_          84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE  163 (388)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf             22222222121122222222222222222222222222221112222222222222222222110001356788887402


Q ss_pred             HCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf             1998-468963999999839959999999999822999699999899999976998999999999985099996888759
Q 002729          232 TRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNL  310 (887)
Q Consensus       232 ~~p~-~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  310 (887)
                      ..|+ ...+..++..+...+++++|...+++++..+|++..++..+|.++...|++++|+..++++....+.....+..+
T Consensus       164 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  243 (388)
T d1w3ba_         164 TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNL  243 (388)
T ss_dssp             HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             58610689986363010247199999999999984946499999971552200529999999998577755479999999


Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf             99999728926999999999831689915674399999982999999999999981099988899999999999099899
Q 002729          311 GNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD  390 (887)
Q Consensus       311 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  390 (887)
                      |.++...|++++|+..|+++++..|++..++..+|.++...|++++|+..++.+....|.....+..++.++...|++++
T Consensus       244 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  323 (388)
T d1w3ba_         244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEE  323 (388)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHH
T ss_conf             99999878999999999999984999899999999999974879999999986540487300101579999998789999


Q ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             99999999950999299999999999967998999999999997099996899999997411179
Q 002729          391 AIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCS  455 (887)
Q Consensus       391 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  455 (887)
                      |+..++++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.++.+++.++..+||
T Consensus       324 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         324 AVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf             99999999986889899999999999985999999999999997099989999999999998589

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6.4e-23  Score=185.10  Aligned_cols=103  Identities=20%  Similarity=0.349  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Q ss_conf             74399999982999999999999981099988899999999999099899999999999509992999999999999679
Q 002729          341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG  420 (887)
Q Consensus       341 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  420 (887)
                      +..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.+|...|
T Consensus       175 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g  254 (323)
T d1fcha_         175 QCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLG  254 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_conf             10368888888877550021112222222221110133301221111013788877899884324999999999999878


Q ss_pred             CHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf             98999999999997099996899
Q 002729          421 HVEAAIKSYKQALLLRPDFPEAT  443 (887)
Q Consensus       421 ~~~~A~~~~~~al~~~p~~~~~~  443 (887)
                      ++++|+..|++++++.|++....
T Consensus       255 ~~~~A~~~~~~al~l~p~~~~~~  277 (323)
T d1fcha_         255 AHREAVEHFLEALNMQRKSRGPR  277 (323)
T ss_dssp             CHHHHHHHHHHHHHHHHTC----
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHH
T ss_conf             99999999999997097570011

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.1e-22  Score=183.41  Aligned_cols=121  Identities=17%  Similarity=0.301  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             99999999998509999--6888759999997289269999999998316899156743999999829999999999999
Q 002729          287 DEAIQCYNQCLSLQPSH--PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEV  364 (887)
Q Consensus       287 ~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  364 (887)
                      .+|...+.++++.+|+.  +.++..+|.++...|++++|+..+++++...|++..++..+|.++...|++++|+..++++
T Consensus       153 ~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  232 (323)
T d1fcha_         153 LEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRA  232 (323)
T ss_dssp             HHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf             99999999999971301222111036888888887755002111222222222111013330122111101378887789


Q ss_pred             HHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHH
Q ss_conf             8109998889999999999909989999999999950999299
Q 002729          365 LRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAE  407 (887)
Q Consensus       365 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  407 (887)
                      ++.+|+++.++..+|.++...|++++|+..|+++++++|++..
T Consensus       233 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~  275 (323)
T d1fcha_         233 LELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG  275 (323)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC--
T ss_pred             HHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
T ss_conf             9884324999999999999878999999999999970975700

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.2e-19  Score=158.45  Aligned_cols=235  Identities=11%  Similarity=0.119  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             4689639999998399599999999998229996999998999999769-989999999999850999968887599999
Q 002729          236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVG-RVDEAIQCYNQCLSLQPSHPQALTNLGNIY  314 (887)
Q Consensus       236 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~  314 (887)
                      ..++..++.++.+.+.+++|+..++++++.+|.+..+|..+|.++...+ ++++|+..++++++.+|++..++..+|.++
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~  122 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV  122 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999958866999999999998798876999999999998376799999999999988774226898875888


Q ss_pred             HHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC------H
Q ss_conf             9728926999999999831689915674399999982999999999999981099988899999999999099------8
Q 002729          315 MEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGR------V  388 (887)
Q Consensus       315 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~------~  388 (887)
                      ...|++++|+..++++++.+|.+..+|..+|.++...|++++|+..++++++++|.+..+|.++|.++...+.      +
T Consensus       123 ~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~  202 (315)
T d2h6fa1         123 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVL  202 (315)
T ss_dssp             HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHH
T ss_pred             HHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf             85053788998875554321004688998877888888667899999999987974499998899999874563102354


Q ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHC--CCHHHHHHHHH
Q ss_conf             999999999995099929999999999996799899999999999709999--68999999974111--79325868899
Q 002729          389 TDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF--PEATCNLLHTLQCV--CSWEDRDRMFS  464 (887)
Q Consensus       389 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~--g~~~~a~~~~~  464 (887)
                      ++|+..+.++++.+|++..++..++.++...| .+++...+++++++.|+.  +.+...++..+...  +..+.+...++
T Consensus       203 ~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~  281 (315)
T d2h6fa1         203 EREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILN  281 (315)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf             77679999999849885699999877988627-18899999999972877578999999999999998358787999999


Q ss_pred             HHHHHHH
Q ss_conf             9999999
Q 002729          465 EVEGIIR  471 (887)
Q Consensus       465 ~~~~~~~  471 (887)
                      ++.+++.
T Consensus       282 ka~~l~~  288 (315)
T d2h6fa1         282 KALELCE  288 (315)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
T ss_conf             9999999

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.4e-19  Score=157.09  Aligned_cols=201  Identities=13%  Similarity=0.112  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             4699999999986099999999999998419993889999999999909-999999999999830999499999999999
Q 002729           33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG-DIDLAIRYYLVAIELRPNFADAWSNLASAY  111 (887)
Q Consensus        33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~  111 (887)
                      .+++..+|.++...+.+++|+..++++++.+|.+..+|..+|.++...| ++++|+..++++++.+|++..+|..+|.++
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~  122 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV  122 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999958866999999999998798876999999999998376799999999999988774226898875888


Q ss_pred             HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC------H
Q ss_conf             9839969999999999971999899999999999983995899999999986299809999999999997299------8
Q 002729          112 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD------L  185 (887)
Q Consensus       112 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~------~  185 (887)
                      ...|++++|+..++++++.+|++..++..+|.++...+++++|+..++++++.+|.+..+|..++.++...+.      +
T Consensus       123 ~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~  202 (315)
T d2h6fa1         123 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVL  202 (315)
T ss_dssp             HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHH
T ss_pred             HHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf             85053788998875554321004688998877888888667899999999987974499998899999874563102354


Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf             8999999999950999878998899999985993899999999996199
Q 002729          186 NRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP  234 (887)
Q Consensus       186 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p  234 (887)
                      ++|+..+.++++.+|.+..++..++.++... ...++...++++++..|
T Consensus       203 ~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~  250 (315)
T d2h6fa1         203 EREVQYTLEMIKLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQP  250 (315)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHCC
T ss_conf             7767999999984988569999987798862-71889999999997287

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.85  E-value=4.6e-20  Score=163.55  Aligned_cols=231  Identities=6%  Similarity=-0.051  Sum_probs=102.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHCCC-HHHH-HHHHHHHHHCCCHHHHHHH
Q ss_conf             998899999999995099987899889999998599--38999999999961998-4689-6399999983995999999
Q 002729          183 GDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGM--PQEAIMCYQRAVQTRPN-AIAF-GNLASTYYERGQADMAILY  258 (887)
Q Consensus       183 g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~p~-~~~~-~~la~~~~~~~~~~~A~~~  258 (887)
                      +++++|+..++++++.+|++...+..++.++...++  +++|+..++++++.+|. ...+ ...+.++...+.+++|+..
T Consensus        87 ~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~  166 (334)
T d1dcea1          87 ALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAF  166 (334)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf             78999999999999868886798988648998843042899999999998559212111105789998744552899999


Q ss_pred             HHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf             99998229996999998999999769989999999999850999968887599999972892699999999983168991
Q 002729          259 YKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLS  338 (887)
Q Consensus       259 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~  338 (887)
                      +++++..+|.+..+|..+|.++...|++++|...++++++..|......    ..+...+..+++...+.+++...|...
T Consensus       167 ~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~a~~~~~~~l~~~~~~~  242 (334)
T d1dcea1         167 TDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELV----QNAFFTDPNDQSAWFYHRWLLGRAEPL  242 (334)
T ss_dssp             HHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHH----HHHHHHCSSCSHHHHHHHHHHSCCCCS
T ss_pred             HHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHCCHHHHHHHHHHHHHHCCCHH
T ss_conf             9998871898799999999999982688989998877677689999999----999882441488999998877186605


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf             5674399999982999999999999981099988899999999999099899999999999509992999999999999
Q 002729          339 APFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYK  417 (887)
Q Consensus       339 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  417 (887)
                      ..+..++..+...+++.+|+..+.++++.+|.+..++..+|.++...|++++|+++++++++++|.....|..++..+.
T Consensus       243 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~  321 (334)
T d1dcea1         243 FRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL  321 (334)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             6788799999998669999999998876291379999999999987899999999999999879663999999999986

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.84  E-value=9.1e-20  Score=161.34  Aligned_cols=231  Identities=6%  Similarity=-0.088  Sum_probs=130.2

Q ss_pred             CCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCC--HHHHHHHHHHHHHCCCCCHHHH-HHHHHHHHHCCCHHHHHHH
Q ss_conf             9938999999999961998-4689639999998399--5999999999982299969999-9899999976998999999
Q 002729          217 GMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQ--ADMAILYYKQAIGCDPRFLEAY-NNLGNALKDVGRVDEAIQC  292 (887)
Q Consensus       217 g~~~~A~~~~~~~~~~~p~-~~~~~~la~~~~~~~~--~~~A~~~~~~~l~~~p~~~~~~-~~la~~~~~~g~~~~A~~~  292 (887)
                      +++++|+..++++++.+|+ ...+..++.++...++  +++|+..++++++.+|.....+ ...+.++...+.+++|+..
T Consensus        87 ~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~  166 (334)
T d1dcea1          87 ALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAF  166 (334)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf             78999999999999868886798988648998843042899999999998559212111105789998744552899999


Q ss_pred             HHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCH
Q ss_conf             99998509999688875999999728926999999999831689915674399999982999999999999981099988
Q 002729          293 YNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAA  372 (887)
Q Consensus       293 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  372 (887)
                      ++++++.+|.+..++..+|.++...|++++|...++++....|.....    ...+...+..+++...+.+++...|...
T Consensus       167 ~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~a~~~~~~~l~~~~~~~  242 (334)
T d1dcea1         167 TDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELEL----VQNAFFTDPNDQSAWFYHRWLLGRAEPL  242 (334)
T ss_dssp             HHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHH----HHHHHHHCSSCSHHHHHHHHHHSCCCCS
T ss_pred             HHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHCCHHHHHHHHHHHHHHCCCHH
T ss_conf             999887189879999999999998268898999887767768999999----9999882441488999998877186605


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf             8999999999990998999999999995099929999999999996799899999999999709999689999999741
Q 002729          373 DGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ  451 (887)
Q Consensus       373 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  451 (887)
                      ..+..++.++...+++.+|+..+.++++.+|.+..++..+|.++...|++++|+++|+++++++|.....+..+...+.
T Consensus       243 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~  321 (334)
T d1dcea1         243 FRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL  321 (334)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             6788799999998669999999998876291379999999999987899999999999999879663999999999986

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=1.2e-15  Score=130.36  Aligned_cols=92  Identities=14%  Similarity=0.069  Sum_probs=37.1

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHCCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC------CCCCHHHHHHHH
Q ss_conf             9999998299999999999998109998----889999999999909989999999999950------999299999999
Q 002729          344 LAVIYKQQGNYADAISCYNEVLRIDPLA----ADGLVNRGNTYKEIGRVTDAIQDYIRAITI------RPTMAEAHANLA  413 (887)
Q Consensus       344 la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la  413 (887)
                      ++.++...|++++|...++++++..+.+    ...+..+|.++...|++++|...+++++..      .|....++..+|
T Consensus       219 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la  298 (366)
T d1hz4a_         219 RVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLN  298 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             99999860448989999999997622466677788999999998758799999999999988764266747999999999


Q ss_pred             HHHHHCCCHHHHHHHHHHHHHC
Q ss_conf             9999679989999999999970
Q 002729          414 SAYKDSGHVEAAIKSYKQALLL  435 (887)
Q Consensus       414 ~~~~~~g~~~~A~~~~~~al~~  435 (887)
                      .+|...|++++|.+.+++++++
T Consensus       299 ~~~~~~g~~~~A~~~l~~Al~l  320 (366)
T d1hz4a_         299 QLYWQAGRKSDAQRVLLDALKL  320 (366)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHH
T ss_conf             9999878999999999999997

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=1.3e-15  Score=130.13  Aligned_cols=60  Identities=20%  Similarity=0.187  Sum_probs=30.6

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHC------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf             43999999829999999999999810------9998889999999999909989999999999950
Q 002729          342 NNLAVIYKQQGNYADAISCYNEVLRI------DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI  401 (887)
Q Consensus       342 ~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  401 (887)
                      ..++.++...|++++|...+++++..      .|....++..+|.++...|++++|++.+++++++
T Consensus       255 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l  320 (366)
T d1hz4a_         255 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL  320 (366)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             999999987587999999999999887642667479999999999999878999999999999997

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=9.5e-17  Score=138.64  Aligned_cols=138  Identities=17%  Similarity=0.107  Sum_probs=64.9

Q ss_pred             CCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf             799999999999985199----8646999999999860999999999999984199938899999999999099999999
Q 002729           13 GSYKQALEHSNSVYERNP----LRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIR   88 (887)
Q Consensus        13 g~~~~A~~~~~~~l~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~   88 (887)
                      .+++.|+..+++++...+    ....+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.
T Consensus        13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~   92 (259)
T d1xnfa_          13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE   92 (259)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHH
T ss_conf             79999999999998763369999999999999999987999999999998543499988999600427888777887523


Q ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf             99999830999499999999999983996999999999997199989999999999998399
Q 002729           89 YYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGL  150 (887)
Q Consensus        89 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~  150 (887)
                      .|+++++.+|++..++..+|.++...|++++|+..++++++.+|.+......++......+.
T Consensus        93 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~  154 (259)
T d1xnfa_          93 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDE  154 (259)
T ss_dssp             HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             44689998761111588899999987667999999999986530007888999999988535

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=8.5e-17  Score=139.01  Aligned_cols=117  Identities=18%  Similarity=0.140  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             89999999999909999999999999830999499999999999983996999999999997199989999999999998
Q 002729           68 ECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKA  147 (887)
Q Consensus        68 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~  147 (887)
                      .+++.+|.+|...|++++|+..|+++++++|+++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++..
T Consensus        38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~  117 (259)
T d1xnfa_          38 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY  117 (259)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999879999999999985434999889996004278887778875234468999876111158889999998


Q ss_pred             CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf             3995899999999986299809999999999997299
Q 002729          148 QGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD  184 (887)
Q Consensus       148 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  184 (887)
                      .|++++|+..++++++..|.+......++..+...+.
T Consensus       118 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~  154 (259)
T d1xnfa_         118 GGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDE  154 (259)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             7667999999999986530007888999999988535

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=1.2e-12  Score=107.71  Aligned_cols=188  Identities=11%  Similarity=0.063  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             59999999999822-999699999899999976998999999999985099996-8887599999972892699999999
Q 002729          252 ADMAILYYKQAIGC-DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHP-QALTNLGNIYMEWNMLPAAASYYKA  329 (887)
Q Consensus       252 ~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~  329 (887)
                      .+++...+++++.. .|.....|..++..+...|++++|...++++++..|.+. .+|...+......++++.|...|++
T Consensus        80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~  159 (308)
T d2onda1          80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK  159 (308)
T ss_dssp             HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             59999999999987499879999999999986133899999999999871578699999999999982786889999999


Q ss_pred             HHHCCCCCCHHHHHHHHHHH-HCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC---
Q ss_conf             98316899156743999999-82999999999999981099988899999999999099899999999999509992---
Q 002729          330 TLAVTTGLSAPFNNLAVIYK-QQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM---  405 (887)
Q Consensus       330 a~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---  405 (887)
                      ++...|.....+...+.... ..|+.+.|...|+++++..|.++..+...+..+...|+++.|...|+++++..|.+   
T Consensus       160 al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~  239 (308)
T d2onda1         160 AREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK  239 (308)
T ss_dssp             HHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGG
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf             99808886799999999998765577899999999998610038899999999998698689999999999827898689


Q ss_pred             -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             -9999999999996799899999999999709999
Q 002729          406 -AEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF  439 (887)
Q Consensus       406 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  439 (887)
                       ...|..........|+.+.+..+++++.+..|+.
T Consensus       240 ~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~  274 (308)
T d2onda1         240 SGEIWARFLAFESNIGDLASILKVEKRRFTAFREE  274 (308)
T ss_dssp             CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf             99999999999998499999999999999877110

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=2.6e-12  Score=105.18  Aligned_cols=217  Identities=9%  Similarity=-0.020  Sum_probs=157.8

Q ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHHHH--------------CCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCC
Q ss_conf             9999999982299969999989999997--------------69989999999999850-99996888759999997289
Q 002729          255 AILYYKQAIGCDPRFLEAYNNLGNALKD--------------VGRVDEAIQCYNQCLSL-QPSHPQALTNLGNIYMEWNM  319 (887)
Q Consensus       255 A~~~~~~~l~~~p~~~~~~~~la~~~~~--------------~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~  319 (887)
                      +...|++++...|..++.|...+..+..              .+..++|...++++++. .|.+...+...+..+...|+
T Consensus        35 v~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~  114 (308)
T d2onda1          35 VMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMK  114 (308)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
T ss_conf             99999999987779999999999999870736887778763102459999999999987499879999999999986133


Q ss_pred             HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHH
Q ss_conf             2699999999983168991-5674399999982999999999999981099988899999999999-0998999999999
Q 002729          320 LPAAASYYKATLAVTTGLS-APFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKE-IGRVTDAIQDYIR  397 (887)
Q Consensus       320 ~~~A~~~~~~a~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~  397 (887)
                      ++.|...|++++...|.+. .+|..++......++++.|...|+++++..|.....+...+..... .|+.+.|...|++
T Consensus       115 ~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~  194 (308)
T d2onda1         115 YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFEL  194 (308)
T ss_dssp             HHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             89999999999987157869999999999998278688999999999808886799999999998765577899999999


Q ss_pred             HHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             99509992999999999999679989999999999970999968----999999974111793258688999999999
Q 002729          398 AITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE----ATCNLLHTLQCVCSWEDRDRMFSEVEGIIR  471 (887)
Q Consensus       398 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  471 (887)
                      +++..|+++..+...+..+...|+.+.|+.+|+++++..|.++.    .+..++......|+.+.+.++.+++.+.+.
T Consensus       195 ~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~  272 (308)
T d2onda1         195 GLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR  272 (308)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf             998610038899999999998698689999999999827898689999999999999984999999999999998771

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.1e-15  Score=130.71  Aligned_cols=59  Identities=27%  Similarity=0.315  Sum_probs=18.3

Q ss_pred             CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf             95999999999982299969999989999997699899999999998509999688875
Q 002729          251 QADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTN  309 (887)
Q Consensus       251 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  309 (887)
                      ++++|+.+|++++...|++...+..+|.++...|+..+|+.+|.+++...|..+.++.+
T Consensus       167 ~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~n  225 (497)
T d1ya0a1         167 QTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTN  225 (497)
T ss_dssp             CHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf             47899999999998789965999999999998699999999999998179997899999

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.48  E-value=5.2e-12  Score=103.00  Aligned_cols=95  Identities=17%  Similarity=0.232  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHH-----H
Q ss_conf             74399999982999999999999981099988-------89999999999909989999999999950999299-----9
Q 002729          341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAA-------DGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAE-----A  408 (887)
Q Consensus       341 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~  408 (887)
                      +..+|.++..+|++++|+..+++++...+...       ..+...+.++...|++..|...++++.+.+|....     .
T Consensus       161 ~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~  240 (290)
T d1qqea_         161 FIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNF  240 (290)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHH
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf             89999999981739999999999998681332455569999999999999846599999999999975977444399999


Q ss_pred             HHHHHHHHHH--CCCHHHHHHHHHHHHHC
Q ss_conf             9999999996--79989999999999970
Q 002729          409 HANLASAYKD--SGHVEAAIKSYKQALLL  435 (887)
Q Consensus       409 ~~~la~~~~~--~g~~~~A~~~~~~al~~  435 (887)
                      ...+..++..  .+.+++|+..|.++.++
T Consensus       241 l~~l~~a~~~~d~e~~~eai~~y~~~~~l  269 (290)
T d1qqea_         241 LKSLIDAVNEGDSEQLSEHCKEFDNFMRL  269 (290)
T ss_dssp             HHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHC
T ss_conf             99999999836899999999999887546

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=5.4e-11  Score=95.34  Aligned_cols=128  Identities=20%  Similarity=0.173  Sum_probs=82.1

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCH
Q ss_conf             59999997289269999999998316899156743999999829999999999999810999888999999999990998
Q 002729          309 NLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRV  388 (887)
Q Consensus       309 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  388 (887)
                      ..|..+...|++++|+..|.+   ..+.++.+++++|.++..+|++++|+..|+++++++|+++.++.++|.++.++|++
T Consensus        10 ~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~   86 (192)
T d1hh8a_          10 NEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKY   86 (192)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHCCCHHHHHHHHHH---CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf             999999987799999999986---48988999999999999858914678789999998552346678899999854249


Q ss_pred             HHHHHHHHHHHHCCCC----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             9999999999950999----------------29999999999996799899999999999709999
Q 002729          389 TDAIQDYIRAITIRPT----------------MAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF  439 (887)
Q Consensus       389 ~~A~~~~~~al~~~p~----------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  439 (887)
                      ++|+..|++++...+.                ..++++++|.++..+|++++|.+.+++++++.|+.
T Consensus        87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_          87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
T ss_conf             9999999999986726736789986654363058899999999999789999999999998369980

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.40  E-value=3.7e-09  Score=81.52  Aligned_cols=82  Identities=20%  Similarity=0.326  Sum_probs=41.9

Q ss_pred             CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH----CCCHH
Q ss_conf             999999999999981099988899999999999----0998999999999995099929999999999996----79989
Q 002729          352 GNYADAISCYNEVLRIDPLAADGLVNRGNTYKE----IGRVTDAIQDYIRAITIRPTMAEAHANLASAYKD----SGHVE  423 (887)
Q Consensus       352 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~  423 (887)
                      .+...+..+++.+.+  +.++.+.+.+|.++..    ..++++|+.+|+++.+..  ++.+.+.||.+|..    ..+++
T Consensus       160 ~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~  235 (265)
T d1ouva_         160 KDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEK  235 (265)
T ss_dssp             CCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCST
T ss_pred             CCCCCCHHHHHCCCC--CCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHCCC--CHHHHHHHHHHHHCCCCCCCCHH
T ss_conf             342200012211323--22223322113121267654310344454676653036--89999999999983999761899


Q ss_pred             HHHHHHHHHHHCCC
Q ss_conf             99999999997099
Q 002729          424 AAIKSYKQALLLRP  437 (887)
Q Consensus       424 ~A~~~~~~al~~~p  437 (887)
                      +|.++|+++.+.+.
T Consensus       236 ~A~~~~~kAa~~g~  249 (265)
T d1ouva_         236 QAIENFKKGCKLGA  249 (265)
T ss_dssp             THHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHCCC
T ss_conf             99999999998769

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=5.6e-11  Score=95.23  Aligned_cols=60  Identities=27%  Similarity=0.296  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             999999999990998999999999995099929999999999996799899999999999
Q 002729          374 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQAL  433 (887)
Q Consensus       374 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  433 (887)
                      +++++|.++..+|++++|+..|+++++++|+++.++.++|.++.++|++++|+..|++++
T Consensus        38 ~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl   97 (192)
T d1hh8a_          38 ICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEAL   97 (192)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf             999999999985891467878999999855234667889999985424999999999999

>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: Lipopolysaccharide core biosynthesis protein RfaG
species: Escherichia coli [TaxId: 562]

Probab=99.38  E-value=1.8e-12  Score=106.37  Aligned_cols=164  Identities=16%  Similarity=0.124  Sum_probs=130.5

Q ss_pred             CCCCCCCCCCCEEEEECCCC--CCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCEEECCCCCC
Q ss_conf             87889999993899853977--8889878999999995368916998517823599999999982999996787378892
Q 002729          703 KRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMK  780 (887)
Q Consensus       703 ~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~r~~~~~~~~~  780 (887)
                      .|..+|++++.++++..++.  .|..+.+++++.++.+..|+..+++++.++. ...+++.++..+. .+++.|.|..  
T Consensus       185 ~r~~~~~~~~~~~i~~~gr~~~~Kg~~~li~a~~~l~~~~~~~~~~ii~g~~~-~~~~~~~~~~~~~-~~~v~~~g~~--  260 (370)
T d2iw1a1         185 YRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDK-PRKFEALAEKLGV-RSNVHFFSGR--  260 (370)
T ss_dssp             HHHHTTCCTTCEEEEEECSCTTTTTHHHHHHHHHTSCHHHHHTEEEEEESSSC-CHHHHHHHHHHTC-GGGEEEESCC--
T ss_pred             HHHCCCCCCCCEEEEEEECCCCCCCHHHHCCCCCCCCCCCCCCEEEECCCCCC-CCCCCCCCCCCCC-CCCCCCCCCC--
T ss_conf             54304888663699998514554203332011123323322100000112222-2232222222222-2222223323--


Q ss_pred             HHHHHHCCCCCEEECCCCCCC-CHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCC--CCHHHHHHHHHHHH
Q ss_conf             889975057728834999998-213898988189645314652023127999986699975444--89889999999871
Q 002729          781 QEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLA  857 (887)
Q Consensus       781 ~~~~~~~~~~di~ld~~~~~g-~~t~~eal~~g~Pvvt~~~~~~~~r~~~~~l~~~g~~~~~i~--~~~~~y~~~~~~l~  857 (887)
                      ++...+|..+|+++-|..+.| |++.+|||++|+|||+.....+.+-+..      |..+.++.  .|.+++++.+.+|.
T Consensus       261 ~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PvI~s~~~g~~e~i~~------~~~G~l~~~~~d~~~la~~i~~ll  334 (370)
T d2iw1a1         261 NDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIAD------ANCGTVIAEPFSQEQLNEVLRKAL  334 (370)
T ss_dssp             SCHHHHHHHCSEEEECCSCCSSCHHHHHHHHHTCCEEEETTSTTTHHHHH------HTCEEEECSSCCHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCHHHHHCC------CCCEEEECCCCCHHHHHHHHHHHH
T ss_conf             34442223333444322223433113321457703999389971888527------983699869999999999999997


Q ss_pred             CCHHHHHHHHHHHHHHCCC
Q ss_conf             5999999999999930102
Q 002729          858 LDRQKLQALTNKLKSVRLT  876 (887)
Q Consensus       858 ~d~~~~~~~~~~~~~~~~~  876 (887)
                      +|++.+++++++.|.....
T Consensus       335 ~d~~~~~~~~~~ar~~~~~  353 (370)
T d2iw1a1         335 TQSPLRMAWAENARHYADT  353 (370)
T ss_dssp             HCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHH
T ss_conf             6999999999999999998

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=8.4e-11  Score=93.86  Aligned_cols=111  Identities=21%  Similarity=0.270  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Q ss_conf             74399999982999999999999981099988899999999999099899999999999509992999999999999679
Q 002729          341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG  420 (887)
Q Consensus       341 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  420 (887)
                      +...|..+++.|++++|+..|+++++++|.+..++..+|.++..+|++++|+..|+++++.+|++..++..+|.++..+|
T Consensus        13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g   92 (159)
T d1a17a_          13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG   92 (159)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf             99999999995899999998660211000113332456788874054212888899999875446687799999999949


Q ss_pred             CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf             9899999999999709999689999999741
Q 002729          421 HVEAAIKSYKQALLLRPDFPEATCNLLHTLQ  451 (887)
Q Consensus       421 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  451 (887)
                      ++++|+..+++++++.|+++.+...+..+..
T Consensus        93 ~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~  123 (159)
T d1a17a_          93 KFRAALRDYETVVKVKPHDKDAKMKYQECNK  123 (159)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             9999999899998729997999999999999

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=8.7e-11  Score=93.75  Aligned_cols=105  Identities=23%  Similarity=0.290  Sum_probs=44.6

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             99999998609999999999999841999388999999999990999999999999983099949999999999998399
Q 002729           37 LLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGR  116 (887)
Q Consensus        37 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  116 (887)
                      ...|..++..|+|++|+..|+++++.+|++..+|..+|.++...|++++|+..|+++++.+|++..++..+|.++...|+
T Consensus        14 ~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~   93 (159)
T d1a17a_          14 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK   93 (159)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf             99999999958999999986602110001133324567888740542128888999998754466877999999999499


Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf             6999999999997199989999999
Q 002729          117 LNEAAQCCRQALALNPLLVDAHSNL  141 (887)
Q Consensus       117 ~~~A~~~~~~~l~~~p~~~~~~~~l  141 (887)
                      +++|+..+++++...|++..++..+
T Consensus        94 ~~eA~~~~~~a~~~~p~~~~~~~~l  118 (159)
T d1a17a_          94 FRAALRDYETVVKVKPHDKDAKMKY  118 (159)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf             9999998999987299979999999

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.34  E-value=2e-08  Score=76.00  Aligned_cols=24  Identities=33%  Similarity=0.371  Sum_probs=7.6

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             999999998609999999999999
Q 002729           36 LLLLGAIYYQLHDYDMCIARNEEA   59 (887)
Q Consensus        36 ~~~la~~~~~~g~~~~A~~~~~~a   59 (887)
                      ++.+|..++..+++++|+++|+++
T Consensus         5 ~~~lG~~~~~~~d~~~A~~~~~kA   28 (265)
T d1ouva_           5 LVGLGAKSYKEKDFTQAKKYFEKA   28 (265)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             999999999877999999999999

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.2e-10  Score=92.68  Aligned_cols=109  Identities=22%  Similarity=0.357  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Q ss_conf             74399999982999999999999981099988899999999999099899999999999509992999999999999679
Q 002729          341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG  420 (887)
Q Consensus       341 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  420 (887)
                      +...|..+...|++++|+..|+++++.+|.++.++..+|.++..+|++++|+..+.++++.+|+++.+++.+|.++..+|
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~   85 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN   85 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf             99999999996999999999999886199601343000110110000112100134677740220267788999999812


Q ss_pred             CHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             98999999999997099996899999997
Q 002729          421 HVEAAIKSYKQALLLRPDFPEATCNLLHT  449 (887)
Q Consensus       421 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~  449 (887)
                      ++++|+..|+++++++|+++.++..+..+
T Consensus        86 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~l  114 (117)
T d1elwa_          86 RFEEAKRTYEEGLKHEANNPQLKEGLQNM  114 (117)
T ss_dssp             CHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             79999999999998498989999999978

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.3e-10  Score=92.37  Aligned_cols=104  Identities=17%  Similarity=0.190  Sum_probs=40.3

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf             89999863799999999999985199864699999999986099999999999998419993889999999999909999
Q 002729            5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDID   84 (887)
Q Consensus         5 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~   84 (887)
                      .|..++..|+|++|+..|+++++.+|.++.++..+|.++..+|++++|+..++++++.+|+++.+++.+|.++..+|+++
T Consensus         9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~   88 (117)
T d1elwa_           9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE   88 (117)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHH
T ss_conf             99999996999999999999886199601343000110110000112100134677740220267788999999812799


Q ss_pred             HHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf             999999999830999499999999
Q 002729           85 LAIRYYLVAIELRPNFADAWSNLA  108 (887)
Q Consensus        85 ~A~~~~~~al~~~p~~~~~~~~la  108 (887)
                      +|+..|+++++.+|+++.++..++
T Consensus        89 ~A~~~~~~a~~~~p~~~~~~~~l~  112 (117)
T d1elwa_          89 EAKRTYEEGLKHEANNPQLKEGLQ  112 (117)
T ss_dssp             HHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             999999999984989899999999

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.28  E-value=1.8e-11  Score=99.00  Aligned_cols=93  Identities=23%  Similarity=0.300  Sum_probs=33.0

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf             99999982999999999999981099988899999999999099899999999999509992999999999999679989
Q 002729          344 LAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVE  423 (887)
Q Consensus       344 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  423 (887)
                      .|..+...|++++|+..|+++++++|.++.++.++|.+|...|++++|+..|+++++++|++..+++.+|.+|..+|+++
T Consensus        10 ~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~~~~   89 (201)
T d2c2la1          10 QGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYD   89 (201)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
T ss_conf             99999986999999999999998599989999817898741000001247888888718873899999999999879999


Q ss_pred             HHHHHHHHHHHCC
Q ss_conf             9999999999709
Q 002729          424 AAIKSYKQALLLR  436 (887)
Q Consensus       424 ~A~~~~~~al~~~  436 (887)
                      +|+..|++++++.
T Consensus        90 ~A~~~~~~al~l~  102 (201)
T d2c2la1          90 EAIANLQRAYSLA  102 (201)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHC
T ss_conf             9999999998749

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.23  E-value=3.6e-10  Score=89.10  Aligned_cols=98  Identities=20%  Similarity=0.156  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf             69999999998609999999999999841999388999999999990999999999999983099949999999999998
Q 002729           34 DNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMR  113 (887)
Q Consensus        34 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  113 (887)
                      +.+...|..++..|+|++|+..|++++..+|.++.+|..+|.+|...|++++|+..|+++++++|++..+|..+|.++..
T Consensus         5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~   84 (201)
T d2c2la1           5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE   84 (201)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             99999999999869999999999999985999899998178987410000012478888887188738999999999998


Q ss_pred             CCCHHHHHHHHHHHHHHC
Q ss_conf             399699999999999719
Q 002729          114 KGRLNEAAQCCRQALALN  131 (887)
Q Consensus       114 ~g~~~~A~~~~~~~l~~~  131 (887)
                      +|++++|+..+++++++.
T Consensus        85 l~~~~~A~~~~~~al~l~  102 (201)
T d2c2la1          85 MESYDEAIANLQRAYSLA  102 (201)
T ss_dssp             TTCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHC
T ss_conf             799999999999998749

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.4e-09  Score=84.65  Aligned_cols=82  Identities=16%  Similarity=0.144  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
Q ss_conf             99999999999099899999999999509992999999999999679989999999999970999968999999974111
Q 002729          374 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCV  453 (887)
Q Consensus       374 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  453 (887)
                      ++.++|.+|.++|++++|+..+++++.++|+++.+++.+|.++..+|++++|+..|+++++++|+++.+...+..+....
T Consensus        64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  143 (170)
T d1p5qa1          64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRI  143 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             99999999886421101100000001002231034677799998722299999999999972989899999999999999


Q ss_pred             CC
Q ss_conf             79
Q 002729          454 CS  455 (887)
Q Consensus       454 g~  455 (887)
                      ..
T Consensus       144 ~~  145 (170)
T d1p5qa1         144 RR  145 (170)
T ss_dssp             HH
T ss_pred             HH
T ss_conf             99

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=2.6e-09  Score=82.63  Aligned_cols=136  Identities=19%  Similarity=0.212  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf             99998999999769989999999999850999968887599999972892699999999983168991567439999998
Q 002729          271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQ  350 (887)
Q Consensus       271 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~  350 (887)
                      ..+...|..++..|++++|+..|++++...|...........          ....+         ...++.++|.+|.+
T Consensus        14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~----------~~~~~---------~~~~~~nla~~y~k   74 (170)
T d1p5qa1          14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQ----------KAQAL---------RLASHLNLAMCHLK   74 (170)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHH----------HHHHH---------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHH----------HHCHH---------HHHHHHHHHHHHHH
T ss_conf             999999999999699999999999998875101000357776----------40646---------79999999999886


Q ss_pred             CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf             299999999999998109998889999999999909989999999999950999299999999999967998999
Q 002729          351 QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAA  425 (887)
Q Consensus       351 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  425 (887)
                      .|++++|+..++++++++|.++.+++.+|.++..+|++++|+..|+++++++|++..+...++.+....++..+.
T Consensus        75 ~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~  149 (170)
T d1p5qa1          75 LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR  149 (170)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             421101100000001002231034677799998722299999999999972989899999999999999999999

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.12  E-value=4.2e-09  Score=81.09  Aligned_cols=80  Identities=14%  Similarity=0.148  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
Q ss_conf             99999999999099899999999999509992999999999999679989999999999970999968999999974111
Q 002729          374 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCV  453 (887)
Q Consensus       374 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  453 (887)
                      ++.++|.++..+|++++|+..++++++++|++..+++.+|.++..+|++++|+..|+++++++|+++.+...+..+....
T Consensus        66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  145 (168)
T d1kt1a1          66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA  145 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             99849999877622011000223222013104889998899998827899999999999985989899999999999999

>d2bfwa1 c.87.1.8 (A:218-413) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: Glycogen synthase 1, GlgA
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.11  E-value=2.1e-09  Score=83.43  Aligned_cols=162  Identities=9%  Similarity=0.052  Sum_probs=118.2

Q ss_pred             CCCCCCCCCCCE-EEEE-CCCCCCCCHHHHHHHHHHHH--HCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCEEECCCC
Q ss_conf             878899999938-9985-39778889878999999995--3689169985178235999999999829999967873788
Q 002729          703 KRSDYGLPEDKF-IFAC-FNQLYKMDPEIFNTWCNILR--RVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVA  778 (887)
Q Consensus       703 ~r~~~~l~~~~~-~~~~-~~~~~K~~~~~~~~~~~il~--~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~r~~~~~~~  778 (887)
                      .+..+|++++.+ +|.+ +..+.|..+.+++++..+..  ..|+.+|+++|.++.......+..... . .+.+.+.+..
T Consensus        23 ~~~~~~l~~~~~il~~Grl~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G~g~~~~~~~~~~~~~~-~-~~~~~~~~~~  100 (196)
T d2bfwa1          23 LLSKFGMDEGVTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEK-H-GNVKVITEML  100 (196)
T ss_dssp             HHHHTTCCSCEEEEEESCBCSSSSCHHHHHHHHHHHTTSGGGGGEEEEEECCBCHHHHHHHHHHHHH-C-TTEEEECSCC
T ss_pred             HHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHC-C-CEEEEEEECC
T ss_conf             9999597999889997688811049999999988641125788818999961355213454332211-3-1157753023


Q ss_pred             CCHHHHHHCCCCCEEECCCCCCC-CHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCC--CCHHHHHHHHHH
Q ss_conf             92889975057728834999998-213898988189645314652023127999986699975444--898899999998
Q 002729          779 MKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVS  855 (887)
Q Consensus       779 ~~~~~~~~~~~~di~ld~~~~~g-~~t~~eal~~g~Pvvt~~~~~~~~r~~~~~l~~~g~~~~~i~--~~~~~y~~~~~~  855 (887)
                      +.++...+|+.+|+++-|+.+.| |++.+|||++|+|||+.....+..-+.       +-.. ++.  .+.+++++...+
T Consensus       101 ~~~~l~~~~~~~di~v~ps~~e~~~~~~~Eam~~G~pvI~~~~~~~~e~i~-------~~~g-~~~~~~~~~~l~~~i~~  172 (196)
T d2bfwa1         101 SREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDIIT-------NETG-ILVKAGDPGELANAILK  172 (196)
T ss_dssp             CHHHHHHHHTTCSEEEECCSCCSSCHHHHHHHHTTCEEEEESCHHHHHHCC-------TTTC-EEECTTCHHHHHHHHHH
T ss_pred             CCCCCHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCCEEEECCCCCCCEEEC-------CCCE-EEECCCCHHHHHHHHHH
T ss_conf             321100001232334432221123322013331486046517885320102-------8731-46789999999999999


Q ss_pred             HHC-CHHHHHHHHHHHHHHC
Q ss_conf             715-9999999999999301
Q 002729          856 LAL-DRQKLQALTNKLKSVR  874 (887)
Q Consensus       856 l~~-d~~~~~~~~~~~~~~~  874 (887)
                      +.. |.+.+.+++...|++.
T Consensus       173 ~l~~~~~~~~~~~~~a~~~a  192 (196)
T d2bfwa1         173 ALELSRSDLSKFRENCKKRA  192 (196)
T ss_dssp             HHHCCHHHHHHHHHHHHHHH
T ss_pred             HHHCCHHHHHHHHHHHHHHH
T ss_conf             99579999999999999999

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.10  E-value=1.8e-09  Score=83.81  Aligned_cols=87  Identities=20%  Similarity=0.295  Sum_probs=60.2

Q ss_pred             HCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf             10999888999999999990998999999999995099929999999999996799899999999999709999689999
Q 002729          366 RIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCN  445 (887)
Q Consensus       366 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  445 (887)
                      ...|.....+.++|.++.++|++++|+..+.++++++|+++.+++.+|.++..+|++++|+..|+++++++|+++.+...
T Consensus        71 ~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~  150 (169)
T d1ihga1          71 KLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAE  150 (169)
T ss_dssp             GGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf             71902399999899999864021013666554431000223677769999998047999999999999859899999999


Q ss_pred             HHHHHHH
Q ss_conf             9997411
Q 002729          446 LLHTLQC  452 (887)
Q Consensus       446 l~~~~~~  452 (887)
                      +..+...
T Consensus       151 l~~~~~~  157 (169)
T d1ihga1         151 LLKVKQK  157 (169)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
T ss_conf             9999999

>d2f9fa1 c.87.1.8 (A:2-167) First mannosyl transferase WbaZ {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: First mannosyl transferase WbaZ
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.07  E-value=1.8e-09  Score=83.77  Aligned_cols=155  Identities=14%  Similarity=0.127  Sum_probs=116.7

Q ss_pred             CCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHH--HHHHHHHHHHCCCCCCCEEECCCCCC
Q ss_conf             8788999999389985397788898789999999953689169985178235--99999999982999996787378892
Q 002729          703 KRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAG--EMRLRAYAVAQGVQPDQIIFTDVAMK  780 (887)
Q Consensus       703 ~r~~~~l~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~--~~~~~~~~~~~g~~~~r~~~~~~~~~  780 (887)
                      .|..+...+++++|.+.-.+.|..+.+++++.    .+|+.+|+++|.++.+  ...+.+.....+  .++|+|.|..+.
T Consensus         4 ~~~~~~~~~~~~l~iGrl~~~K~~~~~i~a~~----~l~~~~l~ivg~~~~~~~~~~~~~~~~~~~--~~~v~~~g~~~~   77 (166)
T d2f9fa1           4 SKFKFKCYGDFWLSVNRIYPEKRIELQLEVFK----KLQDEKLYIVGWFSKGDHAERYARKIMKIA--PDNVKFLGSVSE   77 (166)
T ss_dssp             TTCCCCCCCSCEEEECCSSGGGTHHHHHHHHH----HCTTSCEEEEBCCCTTSTHHHHHHHHHHHS--CTTEEEEESCCH
T ss_pred             CCCCCCCCCCEEEEEECCCCCCCHHHHHHHHH----HHCCCEEEEEEECCCCCCHHHHHHHHCCCC--CCCEEEEECCCC
T ss_conf             35246899999999923754349999999999----833974999972244542233332202356--675887421221


Q ss_pred             HHHHHHCCCCCEEECCCCCCC-CHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHC
Q ss_conf             889975057728834999998-213898988189645314652023127999986699975444-898899999998715
Q 002729          781 QEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV-NSMKEYEERAVSLAL  858 (887)
Q Consensus       781 ~~~~~~~~~~di~ld~~~~~g-~~t~~eal~~g~Pvvt~~~~~~~~r~~~~~l~~~g~~~~~i~-~~~~~y~~~~~~l~~  858 (887)
                      .+....|..+|+++-|..++| +.+.+|||++|+|||+...+.+..-+..      +..+ ++. .|.+++++....+..
T Consensus        78 ~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~~~g~pvi~s~~~~~~e~i~~------~~~g-~~~~~d~~~~~~~i~~l~~  150 (166)
T d2f9fa1          78 EELIDLYSRCKGLLCTAKDEDFGLTPIEAMASGKPVIAVNEGGFKETVIN------EKTG-YLVNADVNEIIDAMKKVSK  150 (166)
T ss_dssp             HHHHHHHHHCSEEEECCSSCCSCHHHHHHHHTTCCEEEESSHHHHHHCCB------TTTE-EEECSCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEECC------CCCC-CCCCCCHHHHHHHHHHHHH
T ss_conf             11222222222233212211233221101122332205527864033048------8412-4689999999999999980


Q ss_pred             CHHHH-HHHHHHH
Q ss_conf             99999-9999999
Q 002729          859 DRQKL-QALTNKL  870 (887)
Q Consensus       859 d~~~~-~~~~~~~  870 (887)
                      |++.+ +..+++.
T Consensus       151 ~~~~~~~~~~~~a  163 (166)
T d2f9fa1         151 NPDKFKKDCFRRA  163 (166)
T ss_dssp             CTTTTHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
T ss_conf             9999999999998

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.07  E-value=5.9e-09  Score=79.98  Aligned_cols=146  Identities=19%  Similarity=0.291  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf             99998999999769989999999999850999968887599999972892699999999983168991567439999998
Q 002729          271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQ  350 (887)
Q Consensus       271 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~  350 (887)
                      ..+...|..+...|++.+|+..|++++...+.........          ......+         ...++.++|.+|..
T Consensus        16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~----------~~~~~~~---------~~~~~~Nla~~~~~   76 (168)
T d1kt1a1          16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKE----------SKASESF---------LLAAFLNLAMCYLK   76 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHH----------HHHHHHH---------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHH----------HHHCCHH---------HHHHHHHHHHHHHH
T ss_conf             9999999999995999999999999999998750012455----------5310646---------79999849999877


Q ss_pred             CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHH-HHHHHH
Q ss_conf             2999999999999981099988899999999999099899999999999509992999999999999679989-999999
Q 002729          351 QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVE-AAIKSY  429 (887)
Q Consensus       351 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~  429 (887)
                      +|++++|+..++++++++|.+..+++.+|.++..+|++++|+..|+++++++|++..+...++.+....+... ...+.|
T Consensus        77 l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~  156 (168)
T d1kt1a1          77 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTY  156 (168)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             62201100022322201310488999889999882789999999999998598989999999999999986999999999


Q ss_pred             HHHHHC
Q ss_conf             999970
Q 002729          430 KQALLL  435 (887)
Q Consensus       430 ~~al~~  435 (887)
                      .++.+.
T Consensus       157 ~~~f~~  162 (168)
T d1kt1a1         157 ANMFKK  162 (168)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
T ss_conf             999866

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.06  E-value=7.6e-09  Score=79.15  Aligned_cols=76  Identities=18%  Similarity=0.133  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             9999999999909989999999999950999299999999999967998999999999997099996899999997
Q 002729          374 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHT  449 (887)
Q Consensus       374 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  449 (887)
                      ++.++|.+|.++|++++|+..++++++++|.+..+++.+|.++..+|++++|+..|+++++++|++..+...+..+
T Consensus        69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~  144 (153)
T d2fbna1          69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC  144 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             9961999999846530111010001000000012467768999996899999999999998298989999999999

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.06  E-value=3.2e-09  Score=81.95  Aligned_cols=134  Identities=19%  Similarity=0.220  Sum_probs=83.0

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
Q ss_conf             98999999769989999999999850999968887599999972892699999999983168991567439999998299
Q 002729          274 NNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGN  353 (887)
Q Consensus       274 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~  353 (887)
                      ...|..+...|++.+|+..|+++++..+..                  .+...........|.....+.++|.++.+.|+
T Consensus        31 ~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~   92 (169)
T d1ihga1          31 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGS------------------RAAAEDADGAKLQPVALSCVLNIGACKLKMSD   92 (169)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------------HHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCC
T ss_conf             999999999088999999999998741111------------------66665577877190239999989999986402


Q ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf             999999999998109998889999999999909989999999999950999299999999999967998999
Q 002729          354 YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAA  425 (887)
Q Consensus       354 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  425 (887)
                      +++|+..++++++++|.++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+........++
T Consensus        93 ~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~  164 (169)
T d1ihga1          93 WQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK  164 (169)
T ss_dssp             HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             101366655443100022367776999999804799999999999985989999999999999999989999

>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: Glycogen synthase 1, GlgA
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.05  E-value=5.9e-09  Score=80.00  Aligned_cols=163  Identities=9%  Similarity=-0.044  Sum_probs=110.8

Q ss_pred             CCCCCC-CCEEEEECCC--CCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCHH
Q ss_conf             899999-9389985397--7888987899999999536891699851782359999999998299999678737889288
Q 002729          706 DYGLPE-DKFIFACFNQ--LYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQE  782 (887)
Q Consensus       706 ~~~l~~-~~~~~~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~r~~~~~~~~~~~  782 (887)
                      ..++++ +.+++++.+|  +.|..+.+++++.++++.  +.++++.|.++. .........+.+. .+++.|.+..+..+
T Consensus       283 ~~~~~~~~~~~i~~vgrl~~~KG~~~Ll~a~~~~~~~--~~~l~~~G~G~~-~~~~~~~~~~~~~-~~~v~~~~~~~~~~  358 (477)
T d1rzua_         283 HFRIDDDGSPLFCVISRLTWQKGIDLMAEAVDEIVSL--GGRLVVLGAGDV-ALEGALLAAASRH-HGRVGVAIGYNEPL  358 (477)
T ss_dssp             HHTCCCSSSCEEEEESCBSTTTTHHHHHTTHHHHHHT--TCEEEEEECBCH-HHHHHHHHHHHHT-TTTEEEEESCCHHH
T ss_pred             HCCCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHH--CCEEEEEECCCC-HHHHHHHHHHHHC-CCEEEEECCCCHHH
T ss_conf             4144667863899985002158837999999987865--983999936774-5778999987635-87278971547057


Q ss_pred             HHHHCCCCCEEECCCCCCC-CHHHHHHHHHCCCEEEECCCCHHHHHHH---HHHHHCCCCCCCCC-CCHHHHHHHHHHH-
Q ss_conf             9975057728834999998-2138989881896453146520231279---99986699975444-8988999999987-
Q 002729          783 HIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAG---SLCLATGLGEEMIV-NSMKEYEERAVSL-  856 (887)
Q Consensus       783 ~~~~~~~~di~ld~~~~~g-~~t~~eal~~g~Pvvt~~~~~~~~r~~~---~~l~~~g~~~~~i~-~~~~~y~~~~~~l-  856 (887)
                      ....|..+|+++-|+-+++ |++.+|||++|+|||+.....+++-+..   +.+..-+-++.++. .|.++..+...++ 
T Consensus       359 ~~~~~~~aD~~v~PS~~E~fglv~lEAma~G~PvVas~~GG~~E~v~d~~~~~~~~~~~~G~l~~~~d~~~la~ai~~~l  438 (477)
T d1rzua_         359 SHLMQAGCDAIIIPSRFEPCGLTQLYALRYGCIPVVARTGGLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTV  438 (477)
T ss_dssp             HHHHHHHCSEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCEEECCCCCCCCEEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf             99999838513488653578889999998399899907999740552487553346787448969999999999999998


Q ss_pred             --HCCHHHHHHHHHHHHH
Q ss_conf             --1599999999999993
Q 002729          857 --ALDRQKLQALTNKLKS  872 (887)
Q Consensus       857 --~~d~~~~~~~~~~~~~  872 (887)
                        .+|++.+.+++.+..+
T Consensus       439 ~~~~~~~~~~~~~~~a~~  456 (477)
T d1rzua_         439 RYYHDPKLWTQMQKLGMK  456 (477)
T ss_dssp             HHHTCHHHHHHHHHHHHT
T ss_pred             HHHCCHHHHHHHHHHHHH
T ss_conf             600799999999999998

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.04  E-value=7e-09  Score=79.42  Aligned_cols=130  Identities=19%  Similarity=0.219  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
Q ss_conf             99989999997699899999999998509999688875999999728926999999999831689915674399999982
Q 002729          272 AYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQ  351 (887)
Q Consensus       272 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~  351 (887)
                      .+...|..++..|++.+|+..|++++...+.......             .........+     ...++.++|.+|.++
T Consensus        19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~-------------~~~~~~~~~~-----~~~~~~Nla~~~~~l   80 (153)
T d2fbna1          19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDD-------------QILLDKKKNI-----EISCNLNLATCYNKN   80 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCC-------------HHHHHHHHHH-----HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHH-------------HHHHHHHHHH-----HHHHHHHHHHHHHHH
T ss_conf             9999999999959999999999987760730011105-------------7788763107-----889996199999984


Q ss_pred             CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
Q ss_conf             99999999999998109998889999999999909989999999999950999299999999999967
Q 002729          352 GNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDS  419 (887)
Q Consensus       352 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  419 (887)
                      |++++|+..++++++++|.+..+++.+|.++..+|++++|+..|+++++++|++..+...+..+..++
T Consensus        81 ~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl  148 (153)
T d2fbna1          81 KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL  148 (153)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             65301110100010000000124677689999968999999999999982989899999999999999

>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: Glycogen synthase 1, GlgA
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.00  E-value=2.6e-09  Score=82.62  Aligned_cols=161  Identities=9%  Similarity=0.031  Sum_probs=115.7

Q ss_pred             CCCCCCCCCCCEEEEECCC---CCCCCHHHHHHHHHHHH--HCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCEEECCC
Q ss_conf             8788999999389985397---78889878999999995--368916998517823599999999982999996787378
Q 002729          703 KRSDYGLPEDKFIFACFNQ---LYKMDPEIFNTWCNILR--RVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDV  777 (887)
Q Consensus       703 ~r~~~~l~~~~~~~~~~~~---~~K~~~~~~~~~~~il~--~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~r~~~~~~  777 (887)
                      .+..+|+.++ ++++.+++   ..|..+.+++++..+..  ..|+.+|++.|.++...........+ .. .+.++|.+.
T Consensus       240 ~~~~~~~~~~-~~i~~~G~~~~~~Kg~~~ll~a~~~~~~~~~~~~~~lvi~G~~~~~~~~~~~~~~~-~~-~~~~~~~~~  316 (437)
T d2bisa1         240 LLSKFGMDEG-VTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEE-KH-GNVKVITEM  316 (437)
T ss_dssp             HHHHTTCCSC-EEEEEESCBCSSSSCHHHHHHHHHHHTTSGGGGGEEEEEECCBCHHHHHHHHHHHH-TC-TTEEEECSC
T ss_pred             HHHHHHCCCC-CEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHCC-CC-CCCEECCCC
T ss_conf             5455402678-66987303566512589998641023323333321145310223333210022102-32-100002345


Q ss_pred             CCCHHHHHHCCCCCEEECCCCCCC-CHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCC--CCHHHHHHHHH
Q ss_conf             892889975057728834999998-213898988189645314652023127999986699975444--89889999999
Q 002729          778 AMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAV  854 (887)
Q Consensus       778 ~~~~~~~~~~~~~di~ld~~~~~g-~~t~~eal~~g~Pvvt~~~~~~~~r~~~~~l~~~g~~~~~i~--~~~~~y~~~~~  854 (887)
                      .+.++....+..+|+++-|..+.| |++.+|||++|+|||+..-+...+-+     .  +-++ ++.  .|.+++.+...
T Consensus       317 ~~~~~~~~~~~~adi~v~~s~~e~~~~~~~Eama~G~Pvi~~~~g~~~e~i-----~--~~~G-~~~~~~d~~~la~~i~  388 (437)
T d2bisa1         317 LSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDII-----T--NETG-ILVKAGDPGELANAIL  388 (437)
T ss_dssp             CCHHHHHHHHTTCSEEEECCSCCSSCHHHHHHHTTTCEEEEESCTTHHHHC-----C--TTTC-EEECTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHE-----E--CCCE-EEECCCCHHHHHHHHH
T ss_conf             768889998764223544465556426899999879989993899807737-----7--8958-9977999999999999


Q ss_pred             HHHC-CHHHHHHHHHHHHHHC
Q ss_conf             8715-9999999999999301
Q 002729          855 SLAL-DRQKLQALTNKLKSVR  874 (887)
Q Consensus       855 ~l~~-d~~~~~~~~~~~~~~~  874 (887)
                      ++.. |++.+++++++.+...
T Consensus       389 ~ll~~~~~~~~~~~~~~~~~~  409 (437)
T d2bisa1         389 KALELSRSDLSKFRENCKKRA  409 (437)
T ss_dssp             HHHTTTTSCTHHHHHHHHHHH
T ss_pred             HHHHCCHHHHHHHHHHHHHHH
T ss_conf             998379999999999999999

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.96  E-value=7.5e-09  Score=79.18  Aligned_cols=93  Identities=22%  Similarity=0.173  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Q ss_conf             74399999982999999999999981099988899999999999099899999999999509992999999999999679
Q 002729          341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG  420 (887)
Q Consensus       341 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  420 (887)
                      +..+|..+...|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++++|++..++..+|.+|...|
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g   98 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   98 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf             99999999987605899998861011211110012335456410125877410000011111100000378999999978


Q ss_pred             CHHHHHHHHHHHH
Q ss_conf             9899999999999
Q 002729          421 HVEAAIKSYKQAL  433 (887)
Q Consensus       421 ~~~~A~~~~~~al  433 (887)
                      ++++|++.+++.+
T Consensus        99 ~~~~A~~~l~~~l  111 (112)
T d1hxia_          99 NANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
T ss_conf             9999999999981

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.96  E-value=7.1e-09  Score=79.39  Aligned_cols=92  Identities=20%  Similarity=0.099  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Q ss_conf             99999999860999999999999984199938899999999999099999999999998309994999999999999839
Q 002729           36 LLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKG  115 (887)
Q Consensus        36 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  115 (887)
                      .+.+|..+.+.|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++.+|++..++..+|.+|...|
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g   98 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   98 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf             99999999987605899998861011211110012335456410125877410000011111100000378999999978


Q ss_pred             CHHHHHHHHHHH
Q ss_conf             969999999999
Q 002729          116 RLNEAAQCCRQA  127 (887)
Q Consensus       116 ~~~~A~~~~~~~  127 (887)
                      ++++|++.+++.
T Consensus        99 ~~~~A~~~l~~~  110 (112)
T d1hxia_          99 NANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
T ss_conf             999999999998

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.92  E-value=4.9e-09  Score=80.57  Aligned_cols=29  Identities=24%  Similarity=0.184  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             89999999999970999968999999974
Q 002729          422 VEAAIKSYKQALLLRPDFPEATCNLLHTL  450 (887)
Q Consensus       422 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~  450 (887)
                      +++|.++|+++++++|++..++.++..+.
T Consensus       102 ~~~A~~~~~kal~l~P~~~~~~~~L~~~~  130 (145)
T d1zu2a1         102 FDLATQFFQQAVDEQPDNTHYLKSLEMTA  130 (145)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf             78763121100025988899999999999

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=9e-09  Score=78.60  Aligned_cols=105  Identities=9%  Similarity=-0.070  Sum_probs=65.9

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHH
Q ss_conf             39999998299999999999998109998889999999999909---9899999999999509992--999999999999
Q 002729          343 NLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIG---RVTDAIQDYIRAITIRPTM--AEAHANLASAYK  417 (887)
Q Consensus       343 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~  417 (887)
                      .++..+...+++++|.+.|+++++.+|.++.+++++|.++.+.+   ++++|+..+++++..+|.+  ..+++.+|.+|.
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~   83 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY   83 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf             79887369999999999999988329998999999999999851267899999999999860699319999999999999


Q ss_pred             HCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf             679989999999999970999968999999
Q 002729          418 DSGHVEAAIKSYKQALLLRPDFPEATCNLL  447 (887)
Q Consensus       418 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  447 (887)
                      ..|++++|+++|+++++++|++..+.....
T Consensus        84 ~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~  113 (122)
T d1nzna_          84 RLKEYEKALKYVRGLLQTEPQNNQAKELER  113 (122)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             973169999999999976909899999999

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=1.3e-08  Score=77.51  Aligned_cols=106  Identities=10%  Similarity=-0.012  Sum_probs=50.6

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHH
Q ss_conf             8999986379999999999998519986469999999998609---9999999999998419993--8899999999999
Q 002729            5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLH---DYDMCIARNEEALRLEPRF--AECYGNMANAWKE   79 (887)
Q Consensus         5 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~   79 (887)
                      ++..+...+++++|.+.|++++..+|.++++++.+|.++...+   ++++|+..+++++..+|..  ..+++.+|.+|..
T Consensus         5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~   84 (122)
T d1nzna_           5 VLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR   84 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf             98873699999999999999883299989999999999998512678999999999998606993199999999999999


Q ss_pred             CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             0999999999999983099949999999999
Q 002729           80 KGDIDLAIRYYLVAIELRPNFADAWSNLASA  110 (887)
Q Consensus        80 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  110 (887)
                      .|++++|+.+|+++++.+|++..+...+..+
T Consensus        85 ~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I  115 (122)
T d1nzna_          85 LKEYEKALKYVRGLLQTEPQNNQAKELERLI  115 (122)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             7316999999999997690989999999999

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=4.2e-08  Score=73.56  Aligned_cols=98  Identities=18%  Similarity=0.250  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCH-------HHHHHHH
Q ss_conf             743999999829999999999999810999888999999999990998999999999995099929-------9999999
Q 002729          341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMA-------EAHANLA  413 (887)
Q Consensus       341 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la  413 (887)
                      +..+|..+...|++++|+.+|+++++++|.+..++.++|.+|..+|++++|+..++++++++|.+.       .++..+|
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg   86 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG   86 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             99999999985999999999999988496458999868899988186077899999999868012788988999999999


Q ss_pred             HHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf             9999679989999999999970999
Q 002729          414 SAYKDSGHVEAAIKSYKQALLLRPD  438 (887)
Q Consensus       414 ~~~~~~g~~~~A~~~~~~al~~~p~  438 (887)
                      .++..++++++|+.+|++++...++
T Consensus        87 ~~~~~~~~~~~A~~~~~kal~~~~~  111 (128)
T d1elra_          87 NSYFKEEKYKDAIHFYNKSLAEHRT  111 (128)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHCCHHHHHHHHHHHHHCCCC
T ss_conf             9999938899999999999845999

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.84  E-value=1.4e-08  Score=77.07  Aligned_cols=27  Identities=19%  Similarity=0.138  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             999999999995099929999999999
Q 002729          389 TDAIQDYIRAITIRPTMAEAHANLASA  415 (887)
Q Consensus       389 ~~A~~~~~~al~~~p~~~~~~~~la~~  415 (887)
                      ++|++.|+++++++|++..++..++.+
T Consensus       103 ~~A~~~~~kal~l~P~~~~~~~~L~~~  129 (145)
T d1zu2a1         103 DLATQFFQQAVDEQPDNTHYLKSLEMT  129 (145)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf             876312110002598889999999999

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.67  E-value=6.9e-08  Score=71.93  Aligned_cols=125  Identities=12%  Similarity=-0.018  Sum_probs=53.5

Q ss_pred             HCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             72892699999999983168991567439999998299999999999998109998889999999999909989999999
Q 002729          316 EWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDY  395 (887)
Q Consensus       316 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  395 (887)
                      ..|++++|+..++++++.+|.+...+..++.++...|++++|+..++++++++|+....+..++.++...+..+++....
T Consensus         8 ~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~~   87 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGA   87 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             88899999999999999789999999999999998799999999999999869973899999999998346637899875


Q ss_pred             HHHHHC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCH
Q ss_conf             999950-999299999999999967998999999999997099996
Q 002729          396 IRAITI-RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFP  440 (887)
Q Consensus       396 ~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  440 (887)
                      .+.... .|.....+...+..+...|+.++|.+.++++.+..|..+
T Consensus        88 ~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~  133 (264)
T d1zbpa1          88 ATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG  133 (264)
T ss_dssp             CCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
T ss_conf             4442035864799999999999967998999999999983399998

>d1uqta_ c.87.1.6 (A:) Trehalose-6-phosphate synthase, OtsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Trehalose-6-phosphate synthase, OtsA
domain: Trehalose-6-phosphate synthase, OtsA
species: Escherichia coli [TaxId: 562]

Probab=98.66  E-value=2.7e-07  Score=67.53  Aligned_cols=156  Identities=13%  Similarity=0.097  Sum_probs=110.7

Q ss_pred             CCCEEEEECCCCC--CCCHHHHHHHHHHHHHCCCC----EEEEECCCHHH--H------H-------HHHHHHHHCCCCC
Q ss_conf             9938998539778--88987899999999536891----69985178235--9------9-------9999999829999
Q 002729          711 EDKFIFACFNQLY--KMDPEIFNTWCNILRRVPNS----ALWLLRFPAAG--E------M-------RLRAYAVAQGVQP  769 (887)
Q Consensus       711 ~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~----~l~~~~~~~~~--~------~-------~~~~~~~~~g~~~  769 (887)
                      .+..++++..|+.  |..+..+++|.+++++.|+.    .|++++.+...  .      .       ++...+...|. .
T Consensus       252 ~~~~~il~V~Rld~~KGi~~~l~A~~~~l~~~p~~~~~v~lv~~~~~~~~~~~~~~~~~~ev~~lv~~in~~~~~~~~-~  330 (456)
T d1uqta_         252 KNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGW-T  330 (456)
T ss_dssp             TTCEEEEEECCBCGGGCHHHHHHHHHHHHHHCGGGTTTEEEEEECCBCSTTSHHHHHHHHHHHHHHHHHHHHHCBTTB-C
T ss_pred             CCCEEEEEECCCCHHHCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC-C
T ss_conf             898599993787432065899999999987584314618999974875345688999999999999998765212798-7


Q ss_pred             CCEEECCCCCCHHHHHHCCCCCEEECCCCCCC-CHHHHHHHHHCCC-----EEEECCCCHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             96787378892889975057728834999998-2138989881896-----45314652023127999986699975444
Q 002729          770 DQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLP-----MITLPLEKMATRVAGSLCLATGLGEEMIV  843 (887)
Q Consensus       770 ~r~~~~~~~~~~~~~~~~~~~di~ld~~~~~g-~~t~~eal~~g~P-----vvt~~~~~~~~r~~~~~l~~~g~~~~~i~  843 (887)
                      +.+.+.+..+..+..++|..+||++-|+-+.| |++.+|||++|+|     ||...-...+.-++         +.-+|.
T Consensus       331 ~~v~~~~~~~~~~l~a~~~~Adv~v~~s~~EG~~lv~~Ea~a~~~p~~~g~lIlS~~~G~~~~l~---------~g~lVn  401 (456)
T d1uqta_         331 PLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANELT---------SALIVN  401 (456)
T ss_dssp             SEEEECSCCCHHHHHHHHHHCSEEEECCSSBSCCHHHHHHHHHSCTTSCCEEEEETTBGGGGTCT---------TSEEEC
T ss_pred             CEEECCCCCCHHHHHHHHHHHCEEECCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCCHHHHC---------CEEEEC
T ss_conf             50211587678887677753054525876578883999999908988897589728978778859---------769989


Q ss_pred             -CCHHHHHHHHHHHHC-CHHHHHHHHHHHHHHCCC
Q ss_conf             -898899999998715-999999999999930102
Q 002729          844 -NSMKEYEERAVSLAL-DRQKLQALTNKLKSVRLT  876 (887)
Q Consensus       844 -~~~~~y~~~~~~l~~-d~~~~~~~~~~~~~~~~~  876 (887)
                       .|.++.++.+.++.+ +++.++++.+++++....
T Consensus       402 P~d~~~~A~ai~~aL~~~~~er~~~~~~~~~~v~~  436 (456)
T d1uqta_         402 PYDRDEVAAALDRALTMSLAERISRHAEMLDVIVK  436 (456)
T ss_dssp             TTCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             59999999999999749999999999999899997

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.57  E-value=5.3e-07  Score=65.25  Aligned_cols=95  Identities=15%  Similarity=0.110  Sum_probs=56.8

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHCCCCC------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC--------
Q ss_conf             999998299999999999998109998------------889999999999909989999999999950999--------
Q 002729          345 AVIYKQQGNYADAISCYNEVLRIDPLA------------ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT--------  404 (887)
Q Consensus       345 a~~~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--------  404 (887)
                      |..+...|++++|+..|++++++.|..            ..++.++|.+|..+|++++|+..+++++++.|.        
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~   95 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE   95 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             99999859999999999999986844201020012102799999999999982863001576643553043100245544


Q ss_pred             ---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             ---29999999999996799899999999999709999
Q 002729          405 ---MAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF  439 (887)
Q Consensus       405 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  439 (887)
                         ...+++++|.+|..+|++++|+..|++++++.|+.
T Consensus        96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             31127877526999998888888899999999866874

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.55  E-value=1.3e-07  Score=69.82  Aligned_cols=124  Identities=12%  Similarity=0.072  Sum_probs=96.6

Q ss_pred             HHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf             99998299999999999998109998889999999999909989999999999950999299999999999967998999
Q 002729          346 VIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAA  425 (887)
Q Consensus       346 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  425 (887)
                      .-....|++++|+..++++++.+|.+...+..++.++...|++++|+..++++++++|++..++..++.++...+..+++
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHH
T ss_conf             99988889999999999999978999999999999999879999999999999986997389999999999834663789


Q ss_pred             HHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             9999999970-9999689999999741117932586889999999
Q 002729          426 IKSYKQALLL-RPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGI  469 (887)
Q Consensus       426 ~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  469 (887)
                      ...+.+.... .|.........+..+...|+++++...++++.+.
T Consensus        84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~  128 (264)
T d1zbpa1          84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  128 (264)
T ss_dssp             TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf             987544420358647999999999999679989999999999833

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.44  E-value=1.6e-06  Score=61.67  Aligned_cols=27  Identities=15%  Similarity=0.457  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf             999999999909989999999999950
Q 002729          375 LVNRGNTYKEIGRVTDAIQDYIRAITI  401 (887)
Q Consensus       375 ~~~la~~~~~~g~~~~A~~~~~~al~~  401 (887)
                      ++++|.++..+|++++|+..|++++++
T Consensus       103 ~~~~g~~~~~lg~~eeA~~~~~~Al~l  129 (156)
T d2hr2a1         103 VYSRALALDGLGRGAEAMPEFKKVVEM  129 (156)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             752699999888888889999999986

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=2.6e-06  Score=60.09  Aligned_cols=77  Identities=18%  Similarity=0.097  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC-------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf             88999999999990998999999999995099-------92999999999999679989999999999970999968999
Q 002729          372 ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRP-------TMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATC  444 (887)
Q Consensus       372 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  444 (887)
                      ++-.+.+|.++.+.|++.+|+.+|+++++..|       +...++.++|.++.+.|++++|+..|+++++++|+++.+..
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             99999999999997799999999999999886530147647899998726888657739888788779886929799999


Q ss_pred             HHHH
Q ss_conf             9999
Q 002729          445 NLLH  448 (887)
Q Consensus       445 ~l~~  448 (887)
                      ++..
T Consensus        85 Nl~~   88 (95)
T d1tjca_          85 NLKY   88 (95)
T ss_dssp             HHHH
T ss_pred             HHHH
T ss_conf             9999

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.33  E-value=5.1e-06  Score=57.90  Aligned_cols=69  Identities=16%  Similarity=0.100  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999679989999999999970999968999999974111793258688999999999975
Q 002729          406 AEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQV  474 (887)
Q Consensus       406 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  474 (887)
                      ..++..++.++...|++++|+..++++++.+|.+..++..++.++...|++.++...|+++.+.+.+.+
T Consensus        67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eL  135 (179)
T d2ff4a2          67 VLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDL  135 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999998879905789999999984985199999999999985579999999999999989984

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=4.4e-06  Score=58.37  Aligned_cols=41  Identities=17%  Similarity=0.143  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf             99999999999099899999999999509992999999999
Q 002729          374 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLAS  414 (887)
Q Consensus       374 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  414 (887)
                      ++.++|.++.+.|++++|+..++++++++|+++.++.+++.
T Consensus        48 ~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~   88 (95)
T d1tjca_          48 VLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKY   88 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             99987268886577398887887798869297999999999

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.25  E-value=1.2e-05  Score=55.08  Aligned_cols=65  Identities=15%  Similarity=0.132  Sum_probs=49.7

Q ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             98889999999999909989999999999950999299999999999967998999999999997
Q 002729          370 LAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALL  434 (887)
Q Consensus       370 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  434 (887)
                      ....++..++.++...|++++|+..++++++.+|.+..++..++.++...|+..+|++.|+++..
T Consensus        65 ~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~  129 (179)
T d2ff4a2          65 DKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  129 (179)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf             99999999999998879905789999999984985199999999999985579999999999999

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=98.20  E-value=0.00024  Score=45.21  Aligned_cols=138  Identities=14%  Similarity=0.050  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHH---HHHHHH
Q ss_conf             36789999863799999999999985199864699999999986099999999999998419993889999---999999
Q 002729            2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGN---MANAWK   78 (887)
Q Consensus         2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~---la~~~~   78 (887)
                      .|..|...+.+|++.++..+..++ +..|--+...+.............+    +...++.+|+.+.....   ....+.
T Consensus         9 ~y~~a~~a~~~~~~~~~~~~~~~L-~dypL~pYl~~~~l~~~~~~~~~~~----i~~Fl~~~p~~P~~~~lr~~~l~~L~   83 (450)
T d1qsaa1           9 RYAQIKQAWDNRQMDVVEQMMPGL-KDYPLYPYLEYRQITDDLMNQPAVT----VTNFVRANPTLPPARTLQSRFVNELA   83 (450)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHSGGG-TTSTTHHHHHHHHHHHTGGGCCHHH----HHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHH-CCCCCHHHHHHHHHHHCCCCCCHHH----HHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             999999999878989999998560-4798779999999873515699999----99999878998227999999999987


Q ss_pred             HCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf             9099999999999998309994999999999999839969999999999971999899999999999983
Q 002729           79 EKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQ  148 (887)
Q Consensus        79 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~  148 (887)
                      ..+++...+..+    ...|.+.......+.+....|+..+|...+..+-......+.....+-..+...
T Consensus        84 ~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~  149 (450)
T d1qsaa1          84 RREDWRGLLAFS----PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRAS  149 (450)
T ss_dssp             HTTCHHHHHHHC----CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHT
T ss_pred             HCCCHHHHHHHC----CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
T ss_conf             656889999766----689999999999999998759848899999999854787835899999998744

>d2c1xa1 c.87.1.10 (A:7-456) UDP glucose:flavonoid 3-o-glucosyltransferase {Grape (Vitis vinifera) [TaxId: 29760]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: UDPGT-like
domain: UDP glucose:flavonoid 3-o-glucosyltransferase
species: Grape (Vitis vinifera) [TaxId: 29760]

Probab=97.70  E-value=0.00066  Score=41.95  Aligned_cols=144  Identities=12%  Similarity=0.071  Sum_probs=98.0

Q ss_pred             CCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHCCC
Q ss_conf             99938998539778889878999999995368916998517823599999999982999996787378892889975057
Q 002729          710 PEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSL  789 (887)
Q Consensus       710 ~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~  789 (887)
                      +...+++.+++......++.++.....+...+...+|......  ...+...... .+ ++++.+..+.+..+.+. +..
T Consensus       263 ~~~~~v~~s~gs~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~--~~~l~~~~~~-~~-~~nv~~~~~~pq~~lL~-hp~  337 (450)
T d2c1xa1         263 KPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRDKA--RVHLPEGFLE-KT-RGYGMVVPWAPQAEVLA-HEA  337 (450)
T ss_dssp             CTTCEEEEECCSSCCCCHHHHHHHHHHHHHHTCCEEEECCGGG--GGGSCTTHHH-HH-TTTEEEESCCCHHHHHT-STT
T ss_pred             CCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCC--CCCCCHHHHH-HC-CCCCCCCCCCCHHHHHC-CCC
T ss_conf             8642144214435568999999999999844880899977775--3448703444-22-35401554678376652-674


Q ss_pred             CCEEECCCCCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCC---CCHHHHHHHHHHHHCCHHH
Q ss_conf             728834999998213898988189645314652023127999986699975444---8988999999987159999
Q 002729          790 ADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV---NSMKEYEERAVSLALDRQK  862 (887)
Q Consensus       790 ~di~ld~~~~~g~~t~~eal~~g~Pvvt~~~~~~~~r~~~~~l~~~g~~~~~i~---~~~~~y~~~~~~l~~d~~~  862 (887)
                      +|+|+   ..+|..|+.||++.|||+|.++.-.=.-..+.-+-...|... .+.   -|.++..+...++.+|+.+
T Consensus       338 ~~~fI---tHGG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~-~l~~~~~t~~~l~~ai~~vL~d~~y  409 (450)
T d2c1xa1         338 VGAFV---THCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGV-RIEGGVFTKSGLMSCFDQILSQEKG  409 (450)
T ss_dssp             EEEEE---ECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEE-ECGGGSCCHHHHHHHHHHHHHSHHH
T ss_pred             EEEEE---CCCCCCHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHCCCEE-EECCCCCCHHHHHHHHHHHHCCCHH
T ss_conf             16997---068830799999859998963540000899999999709089-8038983899999999999619479

>d1rrva_ c.87.1.5 (A:) TDP-vancosaminyltransferase GftD {Amycolatopsis orientalis [TaxId: 31958]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Gtf glycosyltransferase
domain: TDP-vancosaminyltransferase GftD
species: Amycolatopsis orientalis [TaxId: 31958]

Probab=97.62  E-value=0.0021  Score=38.27  Aligned_cols=135  Identities=10%  Similarity=0.034  Sum_probs=83.9

Q ss_pred             CEEEEECCCCCCCC-HHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHCCCCC
Q ss_conf             38998539778889-87899999999536891699851782359999999998299999678737889288997505772
Q 002729          713 KFIFACFNQLYKMD-PEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD  791 (887)
Q Consensus       713 ~~~~~~~~~~~K~~-~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d  791 (887)
                      .++|.+++...... ....+.....+...|...++..+....          ...-.+++|.+.++.|..+.+   ..+|
T Consensus       238 ~~v~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~v~~~~~~p~~~ll---~~~~  304 (401)
T d1rrva_         238 PPVHIGFGSSSGRGIADAAKVAVEAIRAQGRRVILSRGWTEL----------VLPDDRDDCFAIDEVNFQALF---RRVA  304 (401)
T ss_dssp             CCEEECCTTCCSHHHHHHHHHHHHHHHHTTCCEEEECTTTTC----------CCSCCCTTEEEESSCCHHHHG---GGSS
T ss_pred             CEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCC----------CCCCCCCCEEEEECCCCHHHH---HHCC
T ss_conf             839998786445788999999999986269748995054434----------554578988997314817776---2124


Q ss_pred             EEECCCCCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCC---CCHHHHHHHHHHHHCCHHHHHHH
Q ss_conf             8834999998213898988189645314652023127999986699975444---89889999999871599999999
Q 002729          792 LFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV---NSMKEYEERAVSLALDRQKLQAL  866 (887)
Q Consensus       792 i~ld~~~~~g~~t~~eal~~g~Pvvt~~~~~~~~r~~~~~l~~~g~~~~~i~---~~~~~y~~~~~~l~~d~~~~~~~  866 (887)
                      +++   ..+|.+|+.|||+.|||+|.++-..= ...-+..+...|..- .+-   -|.++..+...++. |++.++..
T Consensus       305 ~~I---~hgG~~t~~Eal~~GvP~l~~P~~~D-Q~~na~~v~~~G~g~-~l~~~~~~~~~L~~ai~~vl-~~~~r~~a  376 (401)
T d1rrva_         305 AVI---HHGSAGTEHVATRAGVPQLVIPRNTD-QPYFAGRVAALGIGV-AHDGPTPTFESLSAALTTVL-APETRARA  376 (401)
T ss_dssp             EEE---ECCCHHHHHHHHHHTCCEEECCCSBT-HHHHHHHHHHHTSEE-ECSSSCCCHHHHHHHHHHHT-SHHHHHHH
T ss_pred             EEE---ECCCCHHHHHHHHHCCCEEEECCCCC-HHHHHHHHHHCCCEE-ECCCCCCCHHHHHHHHHHHH-CHHHHHHH
T ss_conf             888---61772489999983999898066120-899999999879889-75747899999999999984-97999999

>d2pq6a1 c.87.1.10 (A:8-480) (Iso)flavonoid glycosyltransferase {Medicago truncatula [TaxId: 3880]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: UDPGT-like
domain: (Iso)flavonoid glycosyltransferase
species: Medicago truncatula [TaxId: 3880]

Probab=97.61  E-value=0.00079  Score=41.40  Aligned_cols=145  Identities=15%  Similarity=0.192  Sum_probs=98.7

Q ss_pred             CCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHH--HHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHC
Q ss_conf             999389985397788898789999999953689169985178235--999999999829999967873788928899750
Q 002729          710 PEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAG--EMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS  787 (887)
Q Consensus       710 ~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~--~~~~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~  787 (887)
                      +...++++++.......++.......++++.+...+|..+.....  ...+...... .. +++|.+..+.|..+.+. +
T Consensus       286 ~~~~~v~~~~gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~-~~Nv~~~~~~Pq~~lL~-h  362 (473)
T d2pq6a1         286 EPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEFTN-EI-ADRGLIASWCPQDKVLN-H  362 (473)
T ss_dssp             CTTCEEEEECCSSSCCCHHHHHHHHHHHHHTTCEEEEECCGGGSTTTGGGSCHHHHH-HH-TTTEEEESCCCHHHHHT-S
T ss_pred             CCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHH-HC-CCCEEEEEECCHHHHHC-C
T ss_conf             888603313575335548999999999986697399998168765521037620002-21-47668863088799964-7


Q ss_pred             CCCCEEECCCCCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCC--CCHHHHHHHHHHHHCCHH
Q ss_conf             57728834999998213898988189645314652023127999986699975444--898899999998715999
Q 002729          788 SLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQ  861 (887)
Q Consensus       788 ~~~di~ld~~~~~g~~t~~eal~~g~Pvvt~~~~~~~~r~~~~~l~~~g~~~~~i~--~~~~~y~~~~~~l~~d~~  861 (887)
                      ..+++|+   ..+|..|+.||++.|||+|.++--.=.-..+.-+-...|..- .+.  -|.++..+...++.+|+.
T Consensus       363 p~~~~fI---tHGG~~s~~Eal~~GVP~lv~P~~~DQ~~na~rv~~~~G~G~-~l~~~~t~~~l~~ai~~vl~d~~  434 (473)
T d2pq6a1         363 PSIGGFL---THCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGM-EIDTNVKREELAKLINEVIAGDK  434 (473)
T ss_dssp             TTEEEEE---ECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEE-ECCSSCCHHHHHHHHHHHHTSHH
T ss_pred             CCCCEEE---ECCCCCHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHCCEEE-EECCCCCHHHHHHHHHHHHCCCH
T ss_conf             7675999---568840899999859998965641121889999999717378-61897389999999999976976

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.42  E-value=0.0037  Score=36.37  Aligned_cols=81  Identities=16%  Similarity=0.162  Sum_probs=42.1

Q ss_pred             CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH----CCCHH
Q ss_conf             999999999999981099988899999999999----0998999999999995099929999999999996----79989
Q 002729          352 GNYADAISCYNEVLRIDPLAADGLVNRGNTYKE----IGRVTDAIQDYIRAITIRPTMAEAHANLASAYKD----SGHVE  423 (887)
Q Consensus       352 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~  423 (887)
                      .+.++|+.+++++.+.  .++.+.+.+|.+|..    ..++++|+++|+++.+.  .++.+.+.||.+|..    ..+.+
T Consensus        37 ~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~  112 (133)
T d1klxa_          37 INKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEK  112 (133)
T ss_dssp             SCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred             CCHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHCCCCCCCCHH
T ss_conf             3899999987654113--312555567875330135310357888887500025--740677899999982984677899


Q ss_pred             HHHHHHHHHHHCC
Q ss_conf             9999999999709
Q 002729          424 AAIKSYKQALLLR  436 (887)
Q Consensus       424 ~A~~~~~~al~~~  436 (887)
                      +|.++|+++.+..
T Consensus       113 ~A~~~~~~Aa~~G  125 (133)
T d1klxa_         113 QAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHCC
T ss_conf             9999999999878

>d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis orientalis [TaxId: 31958]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Gtf glycosyltransferase
domain: UDP-glucosyltransferase GtfB
species: Amycolatopsis orientalis [TaxId: 31958]

Probab=97.36  E-value=0.0043  Score=35.88  Aligned_cols=132  Identities=10%  Similarity=0.014  Sum_probs=85.2

Q ss_pred             EEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHCCCCCEE
Q ss_conf             89985397788898789999999953689169985178235999999999829999967873788928899750577288
Q 002729          714 FIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLF  793 (887)
Q Consensus       714 ~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~di~  793 (887)
                      +++.++.... ......+.....++..+....+..+....          ...-.+++|++.++.+..+.   +..+|++
T Consensus       240 ~i~~~~~~~~-~~~~~~~~~~~al~~~~~~~~~~~~~~~~----------~~~~~~~nv~~~~~~p~~~~---l~~~~~~  305 (401)
T d1iira_         240 PVYLGFGSLG-APADAVRVAIDAIRAHGRRVILSRGWADL----------VLPDDGADCFAIGEVNHQVL---FGRVAAV  305 (401)
T ss_dssp             CEEEECC----CCHHHHHHHHHHHHHTTCCEEECTTCTTC----------CCSSCGGGEEECSSCCHHHH---GGGSSEE
T ss_pred             EEEECCCCCC-CCHHHHHHHHHHHHHCCCEEEEECCCCCC----------CCCCCCCCEEEEECCCHHHH---HHHCCEE
T ss_conf             5997157546-65689999999999769807984267764----------23357897899702587999---9545899


Q ss_pred             ECCCCCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCC---CCHHHHHHHHHHHHCCHHHHHH
Q ss_conf             34999998213898988189645314652023127999986699975444---8988999999987159999999
Q 002729          794 LDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV---NSMKEYEERAVSLALDRQKLQA  865 (887)
Q Consensus       794 ld~~~~~g~~t~~eal~~g~Pvvt~~~~~~~~r~~~~~l~~~g~~~~~i~---~~~~~y~~~~~~l~~d~~~~~~  865 (887)
                      +   ..+|.+|+.|||+.|||+|.++-.. -...-+..+...|..- .+.   -|.++..+...++.+| +.++.
T Consensus       306 V---~hgG~~t~~Eal~~GvP~v~~P~~~-DQ~~na~~l~~~G~g~-~l~~~~~~~~~l~~ai~~~l~~-~~~~~  374 (401)
T d1iira_         306 I---HHGGAGTTHVAARAGAPQILLPQMA-DQPYYAGRVAELGVGV-AHDGPIPTFDSLSAALATALTP-ETHAR  374 (401)
T ss_dssp             E---ECCCHHHHHHHHHHTCCEEECCCST-THHHHHHHHHHHTSEE-ECSSSSCCHHHHHHHHHHHTSH-HHHHH
T ss_pred             E---ECCCCHHHHHHHHHCCCEEECCCCC-CHHHHHHHHHHCCCEE-ECCCCCCCHHHHHHHHHHHHCH-HHHHH
T ss_conf             9---6377169999998199999806614-1799999999879888-7684789999999999999697-99999

>d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA {Amycolatopsis orientalis [TaxId: 31958]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Gtf glycosyltransferase
domain: TDP-epi-vancosaminyltransferase GtfA
species: Amycolatopsis orientalis [TaxId: 31958]

Probab=97.19  E-value=0.0031  Score=36.92  Aligned_cols=136  Identities=9%  Similarity=0.038  Sum_probs=85.9

Q ss_pred             CCEEEEECCCCC-CCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHCCCC
Q ss_conf             938998539778-8898789999999953689169985178235999999999829999967873788928899750577
Q 002729          712 DKFIFACFNQLY-KMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLA  790 (887)
Q Consensus       712 ~~~~~~~~~~~~-K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~  790 (887)
                      ..+++.++.... +............+...+....+..+....          ...-.+++|.+.++++..+.+   ..+
T Consensus       221 ~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----------~~~~~~~~v~i~~~~p~~~ll---~~a  287 (391)
T d1pn3a_         221 STPVYVGFGSSSRPATADAAKMAIKAVRASGRRIVLSRGWADL----------VLPDDGADCFVVGEVNLQELF---GRV  287 (391)
T ss_dssp             SCCEEEECTTCCSTHHHHHHHHHHHHHHHTTCCEEEECTTTTC----------CCSSCCTTCCEESSCCHHHHH---TTS
T ss_pred             CCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCC----------CCCCCCCCEEEECCCCHHHHH---HHC
T ss_conf             9727872243122327899999999998569779994364333----------445688988995446879998---425


Q ss_pred             CEEECCCCCCCCHHHHHHHHHCCCEEEECCC--CHH-HHHHHHHHHHCCCCCCCC---CCCHHHHHHHHHHHHCCHHHHH
Q ss_conf             2883499999821389898818964531465--202-312799998669997544---4898899999998715999999
Q 002729          791 DLFLDTPLCNAHTTGTDILWAGLPMITLPLE--KMA-TRVAGSLCLATGLGEEMI---VNSMKEYEERAVSLALDRQKLQ  864 (887)
Q Consensus       791 di~ld~~~~~g~~t~~eal~~g~Pvvt~~~~--~~~-~r~~~~~l~~~g~~~~~i---~~~~~~y~~~~~~l~~d~~~~~  864 (887)
                      |+++   ..+|.+|++|||++|+|+|..+-.  ... .+.-+..+...|..- .+   .-|.++..+...++.+| +.++
T Consensus       288 ~~~v---~hgG~~t~~Eal~~G~P~v~~P~~~d~~~eQ~~nA~~l~~~G~g~-~l~~~~~~~~~l~~~i~~~l~~-~~r~  362 (391)
T d1pn3a_         288 AAAI---HHDSAGTTLLAMRAGIPQIVVRRVVDNVVEQAYHADRVAELGVGV-AVDGPVPTIDSLSAALDTALAP-EIRA  362 (391)
T ss_dssp             SCEE---EESCHHHHHHHHHHTCCEEEECSSCCBTTBCCHHHHHHHHHTSEE-EECCSSCCHHHHHHHHHHHTST-THHH
T ss_pred             CEEE---ECCCHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHCCCEE-ECCCCCCCHHHHHHHHHHHHCH-HHHH
T ss_conf             4898---527437999999828868993355677452999999999879889-7685789999999999998399-9999


Q ss_pred             H
Q ss_conf             9
Q 002729          865 A  865 (887)
Q Consensus       865 ~  865 (887)
                      .
T Consensus       363 ~  363 (391)
T d1pn3a_         363 R  363 (391)
T ss_dssp             H
T ss_pred             H
T ss_conf             9

>d2vcha1 c.87.1.10 (A:6-476) Hydroquinone glucosyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: UDPGT-like
domain: Hydroquinone glucosyltransferase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.18  E-value=0.0065  Score=34.48  Aligned_cols=146  Identities=15%  Similarity=0.109  Sum_probs=94.0

Q ss_pred             CCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHH--------------HHHHHHHHHCCCCCCCEEEC
Q ss_conf             9993899853977888987899999999536891699851782359--------------99999999829999967873
Q 002729          710 PEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGE--------------MRLRAYAVAQGVQPDQIIFT  775 (887)
Q Consensus       710 ~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~--------------~~~~~~~~~~g~~~~r~~~~  775 (887)
                      +...+++.+++......+..+......+...+...++..+......              ..+-.-+..... ++.|++.
T Consensus       261 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~nv~~~  339 (471)
T d2vcha1         261 PLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTK-KRGFVIP  339 (471)
T ss_dssp             CTTCEEEEECTTTCCCCHHHHHHHHHHHHHTTCEEEEEECCCCSSTTTTTTCC--CSCGGGGSCTTHHHHTT-TTEEEEE
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHCC-CCCEEEC
T ss_conf             775442002565447898999999987786068769985366665531001344442034317802566516-7875521


Q ss_pred             CCCCCHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHCCCCCCCC--C----CCHHHH
Q ss_conf             7889288997505772883499999821389898818964531465202312799998669997544--4----898899
Q 002729          776 DVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMI--V----NSMKEY  849 (887)
Q Consensus       776 ~~~~~~~~~~~~~~~di~ld~~~~~g~~t~~eal~~g~Pvvt~~~~~~~~r~~~~~l~~~g~~~~~i--~----~~~~~y  849 (887)
                      +++|..+.++ +..+++|+   ..+|.+|+.||++.|||+|.++--.=.-..+.-+...+|..- .+  .    -+.++.
T Consensus       340 ~w~Pq~~lL~-hp~~~~fV---tHGG~gS~~EAl~~GvP~v~~P~~~DQ~~nA~rv~e~lG~Gv-~l~~~~~~~~t~~~l  414 (471)
T d2vcha1         340 FWAPQAQVLA-HPSTGGFL---THCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAAL-RPRAGDDGLVRREEV  414 (471)
T ss_dssp             SCCCHHHHHH-STTEEEEE---ECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTTCCEE-CCCCCTTSCCCHHHH
T ss_pred             CCCCHHHHHC-CCCCCEEE---ECCCCCHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHEEEE-EEECCCCCCCCHHHH
T ss_conf             6578999865-76578897---068842899999859998971440122889999999720489-972487886979999


Q ss_pred             HHHHHHHHCCHH
Q ss_conf             999998715999
Q 002729          850 EERAVSLALDRQ  861 (887)
Q Consensus       850 ~~~~~~l~~d~~  861 (887)
                      .+...++..|++
T Consensus       415 ~~ai~~vl~~~~  426 (471)
T d2vcha1         415 ARVVKGLMEGEE  426 (471)
T ss_dssp             HHHHHHHHTSTH
T ss_pred             HHHHHHHHCCCH
T ss_conf             999999967947

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.15  E-value=0.0061  Score=34.71  Aligned_cols=72  Identities=7%  Similarity=-0.095  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHHCC---CHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf             889999999999909---9899999999999509992-99999999999967998999999999997099996899
Q 002729          372 ADGLVNRGNTYKEIG---RVTDAIQDYIRAITIRPTM-AEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEAT  443 (887)
Q Consensus       372 ~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  443 (887)
                      .++.+.+|+++.+..   +..+++..++.+++.+|.+ .+.++.||..|.++|++++|.++++++++++|++..+.
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~  110 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  110 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf             1019999999982796889999999999998549505999999999999987329999999999982399849999

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.11  E-value=0.0075  Score=34.02  Aligned_cols=13  Identities=15%  Similarity=0.143  Sum_probs=4.7

Q ss_pred             CHHHHHHHHHHHH
Q ss_conf             9999999999998
Q 002729           14 SYKQALEHSNSVY   26 (887)
Q Consensus        14 ~~~~A~~~~~~~l   26 (887)
                      |+++|+..|+++.
T Consensus         8 d~~~A~~~~~kaa   20 (133)
T d1klxa_           8 DLKKAIQYYVKAC   20 (133)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
T ss_conf             9999999999999

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.08  E-value=0.0039  Score=36.17  Aligned_cols=53  Identities=6%  Similarity=-0.046  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHH
Q ss_conf             9999999998109998-8899999999999099899999999999509992999
Q 002729          356 DAISCYNEVLRIDPLA-ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEA  408 (887)
Q Consensus       356 ~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  408 (887)
                      +++.+++++++.+|.. .+.++.+|..|.++|+|++|..+++++++++|++..+
T Consensus        56 ~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA  109 (124)
T d2pqrb1          56 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  109 (124)
T ss_dssp             HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf             999999999854950599999999999998732999999999998239984999

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=96.97  E-value=0.01  Score=33.09  Aligned_cols=125  Identities=10%  Similarity=-0.040  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHH---HHHH
Q ss_conf             4699999999986099999999999998419993889999999999909999999999999830999499999---9999
Q 002729           33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWS---NLAS  109 (887)
Q Consensus        33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~---~la~  109 (887)
                      -...+..+.-.+..+++.++.....+. +..|-.+..-+.............+    +...++..|+.+....   ....
T Consensus         6 ~r~~y~~a~~a~~~~~~~~~~~~~~~L-~dypL~pYl~~~~l~~~~~~~~~~~----i~~Fl~~~p~~P~~~~lr~~~l~   80 (450)
T d1qsaa1           6 QRSRYAQIKQAWDNRQMDVVEQMMPGL-KDYPLYPYLEYRQITDDLMNQPAVT----VTNFVRANPTLPPARTLQSRFVN   80 (450)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHSGGG-TTSTTHHHHHHHHHHHTGGGCCHHH----HHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHH-CCCCCHHHHHHHHHHHCCCCCCHHH----HHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             999999999999878989999998560-4798779999999873515699999----99999878998227999999999


Q ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf             999839969999999999971999899999999999983995899999999986299
Q 002729          110 AYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP  166 (887)
Q Consensus       110 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  166 (887)
                      .+.+.+++...+..+    ...|.+....+..+......|+..+|......+-....
T Consensus        81 ~L~~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~  133 (450)
T d1qsaa1          81 ELARREDWRGLLAFS----PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK  133 (450)
T ss_dssp             HHHHTTCHHHHHHHC----CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS
T ss_pred             HHHHCCCHHHHHHHC----CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
T ss_conf             987656889999766----68999999999999999875984889999999985478

>d2acva1 c.87.1.10 (A:3-463) Triterpene UDP-glucosyl transferase UGT71G1 {Medicago truncatula [TaxId: 3880]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: UDPGT-like
domain: Triterpene UDP-glucosyl transferase UGT71G1
species: Medicago truncatula [TaxId: 3880]

Probab=96.42  E-value=0.014  Score=32.06  Aligned_cols=153  Identities=16%  Similarity=0.178  Sum_probs=88.8

Q ss_pred             CCEEEEECCC-CCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHH-HHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHCCC
Q ss_conf             9389985397-788898789999999953689169985178235-99999999982999996787378892889975057
Q 002729          712 DKFIFACFNQ-LYKMDPEIFNTWCNILRRVPNSALWLLRFPAAG-EMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSL  789 (887)
Q Consensus       712 ~~~~~~~~~~-~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~-~~~~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~  789 (887)
                      ..+++.++.. .....++.+......++..+...+|........ ...+...   ... ++++.+..+.+..+.+ .+..
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~n~~v~~~~pq~~~l-~~p~  348 (461)
T d2acva1         274 KSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEGFLEW---MEL-EGKGMICGWAPQVEVL-AHKA  348 (461)
T ss_dssp             TCEEEEECCSSCCCCCHHHHHHHHHHHHHHTCEEEEECCCCGGGSCTTHHHH---HHH-HCSEEEESSCCHHHHH-HSTT
T ss_pred             CCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHH---HCC-CCCEEEEECCCHHHHH-HCCC
T ss_conf             5303452134435799999999999998537607998404545588630333---125-7873898518778888-5565


Q ss_pred             CCEEECCCCCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHCCCCCCCC---------CCCHHHHHHHHHHHHC-C
Q ss_conf             72883499999821389898818964531465202312799998669997544---------4898899999998715-9
Q 002729          790 ADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMI---------VNSMKEYEERAVSLAL-D  859 (887)
Q Consensus       790 ~di~ld~~~~~g~~t~~eal~~g~Pvvt~~~~~~~~r~~~~~l~~~g~~~~~i---------~~~~~~y~~~~~~l~~-d  859 (887)
                      +|+|+   ..+|.+|+.||++.|||+|.++--.=.-..+.-+....|..- .+         .-|.++..+...++.+ |
T Consensus       349 ~~~fI---tHGG~gs~~eAl~~GVP~l~~P~~~DQ~~nA~rlve~~G~G~-~l~~~~~~~~~~~t~~~l~~a~~~vl~~d  424 (461)
T d2acva1         349 IGGFV---SHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGL-GLRVDYRKGSDVVAAEEIEKGLKDLMDKD  424 (461)
T ss_dssp             EEEEE---ECCCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTSCCEE-ESCSSCCTTCCCCCHHHHHHHHHHHTCTT
T ss_pred             CCEEE---ECCCCCHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCEE-EEECCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf             77798---338844899999859998967760002889999999849367-84153113678547999999999996088


Q ss_pred             HHHHH---HHHHHHHHH
Q ss_conf             99999---999999930
Q 002729          860 RQKLQ---ALTNKLKSV  873 (887)
Q Consensus       860 ~~~~~---~~~~~~~~~  873 (887)
                      ..+|+   ++++.+|..
T Consensus       425 ~~~r~~a~~l~~~~r~a  441 (461)
T d2acva1         425 SIVHKKVQEMKEMSRNA  441 (461)
T ss_dssp             CTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
T ss_conf             99999999999999998

>d1v4va_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: UDP-N-acetylglucosamine 2-epimerase
domain: UDP-N-acetylglucosamine 2-epimerase
species: Thermus thermophilus [TaxId: 274]

Probab=96.35  E-value=0.025  Score=30.09  Aligned_cols=316  Identities=13%  Similarity=0.078  Sum_probs=162.2

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHCCCC-CCCEEEEEECCCCCCHHHHHHHHHH---CCCEEEC--CCCC--------HHH
Q ss_conf             363541898998147735677400799-9818999864799981798999731---3843778--9999--------999
Q 002729          538 RVGYVSSDFGNHPLSHLMGSVFGMHNK-ENVEVFCYALSPNDGTEWRQRTQSE---AEHFVDV--SAMS--------SDM  603 (887)
Q Consensus       538 riG~~s~~~~~h~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~--------~~~  603 (887)
                      ||-++.+   .-|-.-.+.|++..+.. .+|++.++.+|.+-+. ....+...   .+....+  ...+        ...
T Consensus         4 kI~~v~G---tR~e~~kl~pli~~l~~~~~~~~~li~tG~H~~~-~~~~~~~~~i~~d~~l~~~~~~~s~~~~~~~~~~~   79 (373)
T d1v4va_           4 RVVLAFG---TRPEATKMAPVYLALRGIPGLKPLVLLTGQHREQ-LRQALSLFGIQEDRNLDVMQERQALPDLAARILPQ   79 (373)
T ss_dssp             EEEEEEC---SHHHHHHHHHHHHHHHTSTTEEEEEEECSSCHHH-HHHHHHTTTCCCSEECCCCSSCCCHHHHHHHHHHH
T ss_pred             EEEEEEE---HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHH-HHCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             6999987---3697999999999997189998899992688255-63712240888665678788888778999999998


Q ss_pred             HHHHHHHCCCEEEEECCCCCCCCCH-HH-HHCCCCCEEEECCCCC---CCCCCCCCCEE-----EECCCCCCCCCCCCCC
Q ss_conf             9999970897099926876788840-23-2118995378023368---87789964378-----7247328977677885
Q 002729          604 IAKLINEDKIQILINLNGYTKGARN-EI-FAMQPAPIQVSYMGFP---GTTGASYIDYL-----VTDEFVSPLRYAHIYS  673 (887)
Q Consensus       604 ~~~~i~~~~~dil~~~~~~~~~~~~-~~-~~~~~ap~q~~~~g~~---~t~g~~~~dy~-----~~d~~~~p~~~~~~~~  673 (887)
                      +.+.+....+|+++=+. .|.-.-. .+ ....--||.=.--|..   .+.|+|.=-++     +|+-+.+|..   .+.
T Consensus        80 ~~~~l~~~kPD~vlv~G-Dr~e~la~a~aa~~~~ipi~HiegG~rsg~~~~~~~de~~R~~iskls~~hf~~t~---~~~  155 (373)
T d1v4va_          80 AARALKEMGADYVLVHG-DTLTTFAVAWAAFLEGIPVGHVEAGLRSGNLKEPFPEEANRRLTDVLTDLDFAPTP---LAK  155 (373)
T ss_dssp             HHHHHHHTTCSEEEEES-SCHHHHHHHHHHHHTTCCEEEETCCCCCSCTTSSTTHHHHHHHHHHHCSEEEESSH---HHH
T ss_pred             HHHHHHHCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCHHHHHHHHCCCCCEEEECCH---HHH
T ss_conf             76666403764001113-67531037788987621222413434554335676166666552234432551221---566


Q ss_pred             CCEEECC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCC--CCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             3426659---8544578865555678999998878899999938998539778--8898789999999953689169985
Q 002729          674 EKLVHVP---HCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQLY--KMDPEIFNTWCNILRRVPNSALWLL  748 (887)
Q Consensus       674 e~l~~lp---~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~~~  748 (887)
                      ++|.++-   ...+..+-+... .+. ......+.....+.+.++.+++++..  +.......+...+....++..+++.
T Consensus       156 ~~L~~~Ge~~~~I~~vG~p~~D-~i~-~~~~~~~~~~~~~~~~~~lvt~hr~~n~~~~~~~~~~~~~~~~~~~~~~~i~p  233 (373)
T d1v4va_         156 ANLLKEGKREEGILVTGQTGVD-AVL-LAAKLGRLPEGLPEGPYVTVTMHRRENWPLLSDLAQALKRVAEAFPHLTFVYP  233 (373)
T ss_dssp             HHHHTTTCCGGGEEECCCHHHH-HHH-HHHHHCCCCTTCCSSCEEEECCCCGGGGGGHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred             HHHHHHCCCCCCEEECCCCHHH-HHH-HHHHHCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             6666630454213442662155-777-65431100022344553168842655531278999999998653356503564


Q ss_pred             CCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHCCCEEEECCCCHHHHHH
Q ss_conf             17823599999999982999996787378892889975057728834999998213898988189645314652023127
Q 002729          749 RFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVA  828 (887)
Q Consensus       749 ~~~~~~~~~~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~di~ld~~~~~g~~t~~eal~~g~Pvvt~~~~~~~~r~~  828 (887)
                      ..+.. .... ........ ..++.+.+.+++.+++..+..+++++    -++|....||.++|+|||++...+  +|.-
T Consensus       234 ~~~~~-~~~~-~~~~~~~~-~~n~~~~~~l~~~~~l~ll~~s~~vi----gnSssgi~Ea~~lg~P~Inir~~~--eRqe  304 (373)
T d1v4va_         234 VHLNP-VVRE-AVFPVLKG-VRNFVLLDPLEYGSMAALMRASLLLV----TDSGGLQEEGAALGVPVVVLRNVT--ERPE  304 (373)
T ss_dssp             CCSCH-HHHH-HHHHHHTT-CTTEEEECCCCHHHHHHHHHTEEEEE----ESCHHHHHHHHHTTCCEEECSSSC--SCHH
T ss_pred             ECCCC-CCHH-HHHHHHCC-CCCCEEECCCHHHHHHHHHHHCEEEE----CCCCHHHHCCHHHCCCEEEECCCC--CCHH
T ss_conf             03422-2103-55554303-33200111000788888764301685----064122220032058689848876--6987


Q ss_pred             HHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             999986699975444898899999998715999999999999930102999996
Q 002729          829 GSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDT  882 (887)
Q Consensus       829 ~~~l~~~g~~~~~i~~~~~~y~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~  882 (887)
                      .  + ..|..- ++..+.++..+...++..|+..+..+..      ...|..|+
T Consensus       305 g--~-~~g~nv-lv~~d~~~I~~~i~~~l~~~~~~~~~~~------~~npYGdG  348 (373)
T d1v4va_         305 G--L-KAGILK-LAGTDPEGVYRVVKGLLENPEELSRMRK------AKNPYGDG  348 (373)
T ss_dssp             H--H-HHTSEE-ECCSCHHHHHHHHHHHHTCHHHHHHHHH------SCCSSCCS
T ss_pred             H--H-HCCEEE-ECCCCHHHHHHHHHHHHCCHHHHHHCCC------CCCCCCCC
T ss_conf             8--9-629049-7589999999999999719898864024------88989898

>d1o6ca_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: UDP-N-acetylglucosamine 2-epimerase
domain: UDP-N-acetylglucosamine 2-epimerase
species: Bacillus subtilis [TaxId: 1423]

Probab=96.23  E-value=0.029  Score=29.64  Aligned_cols=317  Identities=12%  Similarity=0.127  Sum_probs=164.5

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCCC-CCCEEEEEECCCCCCHHHHHHHHHHCC---CE-EECCC--CCH------
Q ss_conf             552363541898998147735677400799-981899986479998179899973138---43-77899--999------
Q 002729          535 RRLRVGYVSSDFGNHPLSHLMGSVFGMHNK-ENVEVFCYALSPNDGTEWRQRTQSEAE---HF-VDVSA--MSS------  601 (887)
Q Consensus       535 ~~lriG~~s~~~~~h~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~--~~~------  601 (887)
                      +++||-+|.+   .-|---.+.|++..+.. .+|++.+..+|.+.+  ....+.....   .+ ..+..  -+.      
T Consensus         1 ~k~Ki~~v~G---tR~e~~kl~pli~~l~~~~~~~~~li~tG~H~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   75 (377)
T d1o6ca_           1 KKLKVMTVFG---TRPEAIKMAPLVLELKKYPEIDSYVTVTAQHRQ--MLDQVLDAFHIKPDFDLNIMKERQTLAEITSN   75 (377)
T ss_dssp             CCEEEEEEEC---SHHHHHHHHHHHHHGGGCTTEEEEEEECCSCGG--GTHHHHHHTTCCCSEECCCCCTTCCHHHHHHH
T ss_pred             CCCEEEEEEE---CHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHH--HHHHHHHHCCCCCCEEEECCCCCCCHHHHHHH
T ss_conf             9846999997---058599999999999718999879999379889--99999851687775354438899889999999


Q ss_pred             --HHHHHHHHHCCCEEEEECCCCCCCCCHHHHH------CCCCCEEEECCCCCCC---CCCCCCCEE-----EECCCCCC
Q ss_conf             --9999999708970999268767888402321------1899537802336887---789964378-----72473289
Q 002729          602 --DMIAKLINEDKIQILINLNGYTKGARNEIFA------MQPAPIQVSYMGFPGT---TGASYIDYL-----VTDEFVSP  665 (887)
Q Consensus       602 --~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~------~~~ap~q~~~~g~~~t---~g~~~~dy~-----~~d~~~~p  665 (887)
                        ..+.+.+....+|+++-+.     .|...++      ..--||.-.--|....   .|+|.=-++     +||-+.+|
T Consensus        76 ~i~~~~~~~~~~kpD~v~v~G-----Dr~e~la~a~aa~~~~Ipi~HiegG~~s~~~~~~~~de~~R~~iskls~~hf~~  150 (377)
T d1o6ca_          76 ALVRLDELFKDIKPDIVLVHG-----DTTTTFAGSLAAFYHQIAVGHVEAGLRTGNKYSPFPEELNRQMTGAIADLHFAP  150 (377)
T ss_dssp             HHHHHHHHHHHHCCSEEEEET-----TCHHHHHHHHHHHHTTCEEEEESCCCCCSCTTTTTTHHHHHHHHHHHCSEEEES
T ss_pred             HHHHHHHHHHHCCCCEEEEEE-----CCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHCCCCCCCEEEEEEC
T ss_conf             998505666533665367640-----345430156665311422799951456543323471455400356530488632


Q ss_pred             CCCCCCCCCCEEEC---CCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCH---HHHHHHHHHHH
Q ss_conf             77677885342665---9854457886555-56789999988788999999389985397788898---78999999995
Q 002729          666 LRYAHIYSEKLVHV---PHCYFVNDYKQKN-MDVLDPNCQPKRSDYGLPEDKFIFACFNQLYKMDP---EIFNTWCNILR  738 (887)
Q Consensus       666 ~~~~~~~~e~l~~l---p~~~~~~~~~~~~-~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~K~~~---~~~~~~~~il~  738 (887)
                      ..   .+.++|.++   |...+..+.+... -...............+..+.+++.++.+..-...   ..+......+.
T Consensus       151 t~---~~~~~L~~~G~~~~~I~~vG~~~~D~i~~~~~~~~~~~~~~~~~~~~~ilvt~Hr~~~~~~~~~~~~~~~~~~~~  227 (377)
T d1o6ca_         151 TG---QAKDNLLKENKKADSIFVTGNTAIDALNTTVRDGYSHPVLDQVGEDKMILLTAHRRENLGEPMENMFKAIRRIVG  227 (377)
T ss_dssp             SH---HHHHHHHHTTCCGGGEEECCCHHHHHHHHHCCSSCCCSTTTTTTTSEEEEECC----------HHHHHHHHHHHH
T ss_pred             CH---HHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCC
T ss_conf             34---666344330344542752342067888877777775333443057844999832310146633789999875212


Q ss_pred             HCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHCCCEEEE
Q ss_conf             36891699851782359999999998299999678737889288997505772883499999821389898818964531
Q 002729          739 RVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITL  818 (887)
Q Consensus       739 ~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~di~ld~~~~~g~~t~~eal~~g~Pvvt~  818 (887)
                      ..+...++.... +  ...........-...+++.+.+.+++.+++.++..+++++    -++|.-..||-++|+|+|++
T Consensus       228 ~~~~~~~i~~~~-~--~~~~~~~~~~~~~~~~ni~~~~~l~~~~fl~llk~s~~vI----gnSss~i~Ea~~lg~P~Ini  300 (377)
T d1o6ca_         228 EFEDVQVVYPVH-L--NPVVREAAHKHFGDSDRVHLIEPLEVIDFHNFAAKSHFIL----TDSGGVQEEAPSLGKPVLVL  300 (377)
T ss_dssp             HCTTEEEEEC-------CHHHHHHHHC--CCSSEEECCCCCHHHHHHHHHHCSEEE----EC--CHHHHGGGGTCCEEEE
T ss_pred             CCCCCCCCCCCC-C--CCCCCHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHEEE----CCCCHHHHHHHHHHCEEEEE
T ss_conf             335565323455-2--1132112210134565147513213688999986422564----16404677666654148980


Q ss_pred             CCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             46520231279999866999754448988999999987159999999999999301029999967
Q 002729          819 PLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTA  883 (887)
Q Consensus       819 ~~~~~~~r~~~~~l~~~g~~~~~i~~~~~~y~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~  883 (887)
                      ...+  +|...   ...|..- ++..+.++..+.+-++..|......+..      ...|.+|+.
T Consensus       301 r~~t--ERqe~---~~~g~ni-lv~~~~~~I~~~i~~~l~~~~~~~~~~~------~~npYGdG~  353 (377)
T d1o6ca_         301 RDTT--ERPEG---VEAGTLK-LAGTDEENIYQLAKQLLTDPDEYKKMSQ------ASNPYGDGE  353 (377)
T ss_dssp             CSCC--C---C---TTTTSSE-EECSCHHHHHHHHHHHHHCHHHHHHHHH------CCCTTCCSC
T ss_pred             CCCC--CCCCH---HHCCEEE-ECCCCHHHHHHHHHHHHHCHHHHHHHCC------CCCCCCCCH
T ss_conf             7887--58220---0068059-8789999999999999749687763065------889898982

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.56  E-value=0.053  Score=27.64  Aligned_cols=127  Identities=15%  Similarity=0.142  Sum_probs=53.3

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH
Q ss_conf             99999999099999999999998309994999999999999839969999999999971999899999999999983995
Q 002729           72 NMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLV  151 (887)
Q Consensus        72 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~  151 (887)
                      ..|..+.+.|.|+.|...|...-        -+..+..++...+++..|...+.+.     ++...|......+......
T Consensus        19 ~i~~~c~~~~lye~A~~lY~~~~--------d~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e~   85 (336)
T d1b89a_          19 QVGDRCYDEKMYDAAKLLYNNVS--------NFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEF   85 (336)
T ss_dssp             ----------CTTTHHHHHHHTT--------CHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHCC--------CHHHHHHHHHHHCCHHHHHHHHHHC-----CCHHHHHHHHHHHHHCCHH
T ss_conf             99999987877999999998678--------9999999997031599999999880-----8899999999999727287


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             8999999999862998099999999999972998899999999995099987899889999998
Q 002729          152 QEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKA  215 (887)
Q Consensus       152 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~  215 (887)
                      ..+... ..   .....+.-.......|...|.+++.+.+++..+...+.....+..++.+|.+
T Consensus        86 ~la~i~-~~---~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak  145 (336)
T d1b89a_          86 RLAQMC-GL---HIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK  145 (336)
T ss_dssp             HHHHHT-TT---TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred             HHHHHH-HH---HHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf             899999-98---7535788789999999876985999999999975774446799999999998

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.08  E-value=0.074  Score=26.55  Aligned_cols=128  Identities=19%  Similarity=0.232  Sum_probs=57.9

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             99999998609999999999999841999388999999999990999999999999983099949999999999998399
Q 002729           37 LLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGR  116 (887)
Q Consensus        37 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  116 (887)
                      ...|..+...|.|+.|...|...-        -+..+..++...+++..|...+.+.     ++...|......+.....
T Consensus        18 ~~i~~~c~~~~lye~A~~lY~~~~--------d~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e   84 (336)
T d1b89a_          18 QQVGDRCYDEKMYDAAKLLYNNVS--------NFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKE   84 (336)
T ss_dssp             -----------CTTTHHHHHHHTT--------CHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHCC--------CHHHHHHHHHHHCCHHHHHHHHHHC-----CCHHHHHHHHHHHHHCCH
T ss_conf             999999987877999999998678--------9999999997031599999999880-----889999999999972728


Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             69999999999971999899999999999983995899999999986299809999999999997
Q 002729          117 LNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFME  181 (887)
Q Consensus       117 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  181 (887)
                      ..-+... ..   .....++-.......+...|.+++.+..++..+...+.+...+..++.+|.+
T Consensus        85 ~~la~i~-~~---~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak  145 (336)
T d1b89a_          85 FRLAQMC-GL---HIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK  145 (336)
T ss_dssp             HHHHHHT-TT---TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred             HHHHHHH-HH---HHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf             7899999-98---7535788789999999876985999999999975774446799999999998

>d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Peptidoglycan biosynthesis glycosyltransferase MurG
domain: Peptidoglycan biosynthesis glycosyltransferase MurG
species: Escherichia coli [TaxId: 562]

Probab=93.61  E-value=0.15  Score=24.32  Aligned_cols=136  Identities=15%  Similarity=0.154  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEEC-CCHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHCCCCCEEECCCCCCCCHHH
Q ss_conf             87899999999536891699851-78235999999999829999967873788928899750577288349999982138
Q 002729          727 PEIFNTWCNILRRVPNSALWLLR-FPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTG  805 (887)
Q Consensus       727 ~~~~~~~~~il~~~p~~~l~~~~-~~~~~~~~~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~di~ld~~~~~g~~t~  805 (887)
                      ......+.+.+...+.....+.. ............  .... ...+...+....  ....+..+|+++   ..+|++|+
T Consensus       190 ~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~--~~~~-~~~~~v~~f~~~--~~~lm~~adl~I---t~~G~~T~  261 (351)
T d1f0ka_         190 RILNQTMPQVAAKLGDSVTIWHQSGKGSQQSVEQAY--AEAG-QPQHKVTEFIDD--MAAAYAWADVVV---CRSGALTV  261 (351)
T ss_dssp             HHHHHHHHHHHHHHGGGEEEEEECCTTCHHHHHHHH--HHTT-CTTSEEESCCSC--HHHHHHHCSEEE---ECCCHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH--CCCC-CCCCEEEEEHHH--HHHHHHHCCHHH---CCCCCHHH
T ss_conf             466888887666524553045421341044433432--0233-223155543055--899997474222---05542377


Q ss_pred             HHHHHHCCCEEEECCCCH--HHHHHHHHHHHCCCCCCCCCC---CHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf             989881896453146520--231279999866999754448---98899999998715999999999999930
Q 002729          806 TDILWAGLPMITLPLEKM--ATRVAGSLCLATGLGEEMIVN---SMKEYEERAVSLALDRQKLQALTNKLKSV  873 (887)
Q Consensus       806 ~eal~~g~Pvvt~~~~~~--~~r~~~~~l~~~g~~~~~i~~---~~~~y~~~~~~l~~d~~~~~~~~~~~~~~  873 (887)
                      .|++.+|+|+|..|-...  ....-+-.+...|..- .+-.   +.+...+....+  |.+.+.+++.++++.
T Consensus       262 ~Eal~~g~P~I~iP~~~~~~~Q~~NA~~l~~~G~~~-~~~~~~~~~e~l~~~l~~l--~~~~~~~~~~~~~~~  331 (351)
T d1f0ka_         262 SEIAAAGLPALFVPFQHKDRQQYWNALPLEKAGAAK-IIEQPQLSVDAVANTLAGW--SRETLLTMAERARAA  331 (351)
T ss_dssp             HHHHHHTCCEEECCCCCTTCHHHHHHHHHHHTTSEE-ECCGGGCCHHHHHHHHHTC--CHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCCEE-EECHHHCCHHHHHHHHHHH--CHHHHHHHHHHHHCC
T ss_conf             888871785465415467766999999999889989-9223319999999999863--999999999998726

>d1pswa_ c.87.1.7 (A:) ADP-heptose LPS heptosyltransferase II {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: ADP-heptose LPS heptosyltransferase II
domain: ADP-heptose LPS heptosyltransferase II
species: Escherichia coli [TaxId: 562]

Probab=93.13  E-value=0.17  Score=23.79  Aligned_cols=211  Identities=10%  Similarity=-0.026  Sum_probs=96.8

Q ss_pred             HHHHHHHHHCCCEEEEECCCCCCCCCHHHHHCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEECCC
Q ss_conf             99999997089709992687678884023211899537802336887789964378724732897767788534266598
Q 002729          602 DMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPH  681 (887)
Q Consensus       602 ~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~~~~ap~q~~~~g~~~t~g~~~~dy~~~d~~~~p~~~~~~~~e~l~~lp~  681 (887)
                      ..+...++..+.|+.+++.+......+  ...-.+|..+.+.+.... +... .....+.     ....+..++...+..
T Consensus        70 ~~l~~~l~~~~~D~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~-----~~~~~~~~~~~~~~~  140 (348)
T d1pswa_          70 RKLGHSLREKRYDRAYVLPNSFKSALV--PLFAGIPHRTGWRGEMRY-GLLN-DVRVLDK-----EAWPLMVERYIALAY  140 (348)
T ss_dssp             HHHHHHTTTTTCSEEEECSCCSGGGHH--HHHTTCSEEEEECTTTCT-TTCT-EEECCCT-----TTCCSHHHHHHHTTS
T ss_pred             HHHHHHHHHCCCCEEEECCCCCCHHHH--HHHHCCCCCCCCCCCCCC-CCCC-CCCCCCC-----CCCHHHHHHHHHHHH
T ss_conf             668888641343267522533211467--776326511234533334-5334-4332333-----342168899998887


Q ss_pred             CCCCCCCCC-CCCCCCCCCC--CC-----CCCCCCCCCC--CEEEEECCC--CCCC-CHH-HHHHHHHHHHHCCCCEEEE
Q ss_conf             544578865-5556789999--98-----8788999999--389985397--7888-987-8999999995368916998
Q 002729          682 CYFVNDYKQ-KNMDVLDPNC--QP-----KRSDYGLPED--KFIFACFNQ--LYKM-DPE-IFNTWCNILRRVPNSALWL  747 (887)
Q Consensus       682 ~~~~~~~~~-~~~~~~~~~~--~~-----~r~~~~l~~~--~~~~~~~~~--~~K~-~~~-~~~~~~~il~~~p~~~l~~  747 (887)
                      ......... ...+...+..  .+     ....++++.+  .+++....+  ..|. ..+ +.++-.++. + .+...++
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~wp~~~~~~L~~~l~-~-~~~~ivl  218 (348)
T d1pswa_         141 DKGIMRTAQDLPQPLLWPQLQVSEGEKSYTCNQFSLSSERPMIGFCPGAEFGPAKRWPHYHYAELAKQLI-D-EGYQVVL  218 (348)
T ss_dssp             CGGGCSSGGGSCSSCCCCCCCCCHHHHHHHHHHTTCCSSSCEEEEECCCTTCGGGSCCHHHHHHHHHHHH-H-TTCEEEE
T ss_pred             HHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCHHHCCCCCHHHHHHHHHHHH-H-CCCCCCC
T ss_conf             6421222234665332224568989999999873335578769953553223221644677766677776-4-4874222


Q ss_pred             ECCCHHHHHHHHHHHHHCCCC--CCCEEECCCCCCHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHCCCEEEECCCCHHH
Q ss_conf             517823599999999982999--996787378892889975057728834999998213898988189645314652023
Q 002729          748 LRFPAAGEMRLRAYAVAQGVQ--PDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMAT  825 (887)
Q Consensus       748 ~~~~~~~~~~~~~~~~~~g~~--~~r~~~~~~~~~~~~~~~~~~~di~ld~~~~~g~~t~~eal~~g~Pvvt~~~~~~~~  825 (887)
                      .|.+.+ .+............  ..-+.+.|.++..+..+....+|+++    -+-+-++--|.++|+|+|++-|.+-..
T Consensus       219 ~g~~~e-~~~~~~~~~~~~~~~~~~~~~l~g~~sl~el~~li~~a~l~I----~~Dtg~~HlAaa~g~p~i~lfg~~~~~  293 (348)
T d1pswa_         219 FGSAKD-HEAGNEILAALNTEQQAWCRNLAGETQLDQAVILIAACKAIV----TNDSGLMHVAAALNRPLVALYGPSSPD  293 (348)
T ss_dssp             CCCGGG-HHHHHHHHTTSCHHHHTTEEECTTTSCHHHHHHHHHTSSEEE----EESSHHHHHHHHTTCCEEEEESSSCTT
T ss_pred             CCCCCH-HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCEEEE----ECCCCHHHHHHHCCCCEEEEECCCCHH
T ss_conf             444105-999888887631014653335557743788999874330576----158608899998299989997899875


Q ss_pred             HHH
Q ss_conf             127
Q 002729          826 RVA  828 (887)
Q Consensus       826 r~~  828 (887)
                      +.+
T Consensus       294 ~~~  296 (348)
T d1pswa_         294 FTP  296 (348)
T ss_dssp             SSC
T ss_pred             HHC
T ss_conf             608

>d1f6da_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: UDP-N-acetylglucosamine 2-epimerase
domain: UDP-N-acetylglucosamine 2-epimerase
species: Escherichia coli [TaxId: 562]

Probab=91.88  E-value=0.24  Score=22.67  Aligned_cols=154  Identities=16%  Similarity=0.140  Sum_probs=93.4

Q ss_pred             CCCCCEEEEECCCCCCCCHH---HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHH
Q ss_conf             99993899853977888987---899999999536891699851782359999999998299999678737889288997
Q 002729          709 LPEDKFIFACFNQLYKMDPE---IFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIR  785 (887)
Q Consensus       709 l~~~~~~~~~~~~~~K~~~~---~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~r~~~~~~~~~~~~~~  785 (887)
                      .+++.++.+++++..-....   ...+...+.....+..++... ++....+... .....- ..++.+.+.+++.+++.
T Consensus       202 ~~~~~~ilvt~H~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~p~-~~~~~~~~~~-~~~~~~-~~ni~~~~~l~~~~fl~  278 (376)
T d1f6da_         202 DPDKKMILVTGHRRESFGRGFEEICHALADIATTHQDIQIVYPV-HLNPNVREPV-NRILGH-VKNVILIDPQEYLPFVW  278 (376)
T ss_dssp             CTTSEEEEECCCCBSSCCHHHHHHHHHHHHHHHHCTTEEEEEEC-CBCHHHHHHH-HHHHTT-CTTEEEECCCCHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCC-CCCHHHHHHH-HHHHCC-CCCCEEECCCCHHHHHH
T ss_conf             77776699833541111200999999986543421404785254-4321244467-666404-44513323556789999


Q ss_pred             HCCCCCEEECCCCCCCCHHHHHHHHHCCCEEEECC-CCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHHH
Q ss_conf             50577288349999982138989881896453146-52023127999986699975444898899999998715999999
Q 002729          786 RSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPL-EKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQ  864 (887)
Q Consensus       786 ~~~~~di~ld~~~~~g~~t~~eal~~g~Pvvt~~~-~~~~~r~~~~~l~~~g~~~~~i~~~~~~y~~~~~~l~~d~~~~~  864 (887)
                      ++..+++++    -++|.-..||-+.|+|+|++.. ....+|...      |..- ++..+.++..+.+.+...++....
T Consensus       279 ll~~a~~vi----gnSssgi~Ea~~lg~P~Inir~~ter~~~~~~------g~~i-~v~~~~~~I~~ai~~~l~~~~~~~  347 (376)
T d1f6da_         279 LMNHAWLIL----TDSGGIQEEAPSLGKPVLVMRDTTERPEAVTA------GTVR-LVGTDKQRIVEEVTRLLKDENEYQ  347 (376)
T ss_dssp             HHHHCSEEE----ESSSGGGGTGGGGTCCEEECSSCCSCHHHHHH------TSEE-ECCSSHHHHHHHHHHHHHCHHHHH
T ss_pred             HHHHCEEEE----ECCCCHHHHHHHHCCCEEECCCCCCCCCCEEC------CEEE-ECCCCHHHHHHHHHHHHHCHHHHH
T ss_conf             984163998----36850676678748988972787657641236------8069-878999999999999972857665


Q ss_pred             HHHHHHHHHCCCCCCCCC
Q ss_conf             999999930102999996
Q 002729          865 ALTNKLKSVRLTCPLFDT  882 (887)
Q Consensus       865 ~~~~~~~~~~~~~~~~~~  882 (887)
                      .+.      ....|.+|+
T Consensus       348 ~~~------~~~npYGdG  359 (376)
T d1f6da_         348 AMS------RAHNPYGDG  359 (376)
T ss_dssp             HHH------HSCCTTCCS
T ss_pred             HHC------CCCCCCCCC
T ss_conf             304------578989898