Citrus Sinensis ID: 002730

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------

MDTASENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIGTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYRSRRAVVEHCGTDAQEGPVSFVKSDGLKRGFQSIDSSDYQMDEAVSDGNSSEIEEVAKEWEHALWQNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGHSPQRGKNGHSRLSSLSPNARMERIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRYTHNLEDLNYRTSEVLSKHPLMIFIKDI

ccccccccccEEEEEccccccHHHHccccEEEEEEccccEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEcccccccccccccccccccccccccHHHHHHHHHHHHccccccEEEEEEEEEEEEccHHccccccccccccccccccccccccccccccEEEEcccccEEEccccEEEcccHHHHHHHHHHcccccccccccccccccccccEEEEEEEEEccccccccccccccccccccEEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHcccccccccEEEEEccccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHcccccccccHHHHHccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHcccc

cccccccccEEEEEEEccccHHHHHccccEEEEEEccccEEEEcccEEEEEEEEccccccHHHHHHHHcHHHHHHHHccccEEEEEEccccccHHHHHcEcccccccEcHHHHHHHHHHHHHHHHcccEEEEEEEEEEEEEccEEEEccccccccEcEccccccccccccccccEEEEEccccccEEccccHEEEcccEEEcccccEEEccHHHHHHHHHHHHHHcccccccHHHHHHHcEEEEEEEEEEEEcccccEEEEEEEEEEccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccHHHcHHHHHcHHHcccccEEEEEEEEccEHHHHHHHHHHHHHHHHHHccEccccccccccccccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEccccccccccccccccccccHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEcc

mdtasencsvKVAVHvrpligderaqGCKECVAvthgnpqvqigthsftfdhvygnggspssamfgecVAPLVDGLFQGYNATVLAygqtgsgktytmgtglregfqtglIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSksvtanghagkvsisgrppiqiressngvitlAGSTEVAVNTLQEMAACLEQgslsratgstnmnnqssrsHAIFTITLEQMRKLhsvspdngtpdedmdeEYFCAKLHLVDlagserakrtgsdglrlkegiHINRGLLALGNVISALgdekkrregvhvpyrdskLTRLLQdslggnsktVMIACispadinaeESLNTLKYANRarniqnkpvvnrdlISSDMQKLRQQLKYLQAELCaraggapsdeVQVLKGRIAWLEATNEDLCQELHEYRSRRavvehcgtdaqegpvsfvksdglkrgfqsidssdyqmdeavsdgnsSEIEEVAKEWEHALWQNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLaansdghtqkmqdghTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSsarensvnstgyttptgqsnEKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQVdqlslnghspqrgknghsrlsslspnaRMERIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRythnledlnyrtsevlskhplmifikdi

mdtasencsvkvavhvrpligdERAQGCKECVAVTHGNPQVQIGTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSksvtanghagkvsisgrppiqiressnGVITLAGSTEVAVNTLQEMAACLEQGSLSRATgstnmnnqssrSHAIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLvdlagserakrtgsdglrlkegihinrglLALGNVISAlgdekkrregvhvpyrdskltrllqdslggnsKTVMIACISPADINAEESLNTLKYAnrarniqnkpvvnrdLISSDMQKLRQQLKYLQAELCARaggapsdeVQVLKGRIAWLEATNEDLCQELHEYRSRRAVVEHcgtdaqegpvsfvksdglkRGFQSIDSSDYQMDEAVSDGNSSEIEEVAKEWEHALWQNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLaansdghtqkMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKlkkegrkneferhklealnqrqkMVLQRKTEEAAIATKRLKELLEarkssarensvnstgyttptgqsNEKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQVDQLSLnghspqrgknghsrlsslspnaRMERIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRYTHnledlnyrtsevlskhplmifikdi

MDTASENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIGTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDsvsvsksvTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYRSRRAVVEHCGTDAQEGPVSFVKSDGLKRGFQSIDSSDYQMDEAVSDGNSSEIEEVAKEWEHALWQNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASRekellklkkeGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGHSPQRGKNGHSRLSSLSPNARMERIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRYTHNLEDLNYRTSEVLSKHPLMIFIKDI

*******CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIGTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSV****************************GVITLAGSTEVAVNTLQEMAACL***********************IFTITL**********************EYFCAKLHLVDLAG**********GLRLKEGIHINRGLLALGNVISALGD******GVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYRSRRAVVEHCGT***********************************************WEHALWQ***********************FGDIDTEALRHHFGKKIM*********************************************************************************************************************************************************************************************WLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQV*************************************************************ALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRYTHNLEDLNYRTSEVLSKHPLMIFI***

******N**VKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIGTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKS*******GKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRK******************YFCAKLHLVDLAGSERA*******LRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQL*****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************LRFMGDAKNLLQYMFNVA***********************PLMIFIK**

********SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIGTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYRSRRAVVEHCGTDAQEGPVSFVKSDGLKRGFQSIDSSDYQ*************EEVAKEWEHALWQNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQE*****************RLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEA**************************LQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGH***************SPNARMERIASLENMLNMSSKALV**************ALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRYTHNLEDLNYRTSEVLSKHPLMIFIKDI

*******CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIGTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVT************RPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAG***********LRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYRSRRAVVEHCGTDAQEGPVSFVKSDGLKRGF*SIDSSDYQMD******NSSEIEEVAKEWEHALWQNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIA********E*R********************SNEKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQVDQ*********************************ENMLNMSSKALVE**S*LSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRYTHNLEDLNYRTSEVLSKHPLMIFIKDI

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MDTASENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIGTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNxxxxxxxxxxxxxxxxxxxxxLCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYRSRRAVVEHCGTDAQEGPVSFVKSDGLKRGFQSIDSSDYQMDEAVSDGNSSEIEEVAKEWEHALWxxxxxxxxxxxxxxxxxxxxxxxxxxxxDTEALRHHFGKKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxREKELLKxxxxxxxxxxxxxxxxxxxxxQKMVxxxxxxxxxxxxxxxxxxxxxRKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGHSPQRGKNGHSRLSSLSPNARMERIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRYTHNLEDLNYRTSEVLSKHPLMIFIKDI

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		887	2.2.26 [Sep-21-2011]
O95239		1232	Chromosome-associated kin	yes	no	0.883	0.636	0.381	1e-136
Q91784		1226	Chromosome-associated kin	N/A	no	0.901	0.652	0.378	1e-135
P33174		1231	Chromosome-associated kin	yes	no	0.887	0.639	0.376	1e-133
Q2VIQ3		1234	Chromosome-associated kin	no	no	0.891	0.641	0.370	1e-128
Q90640		1225	Chromosome-associated kin	yes	no	0.891	0.645	0.367	1e-124
Q7Z4S6		1674	Kinesin-like protein KIF2	no	no	0.426	0.225	0.496	1e-102
Q9QXL1		1668	Kinesin-like protein KIF2	no	no	0.422	0.224	0.496	1e-101
O75037		1637	Kinesin-like protein KIF2	no	no	0.426	0.230	0.491	1e-101
Q9QXL2		1672	Kinesin-like protein KIF2	no	no	0.426	0.226	0.489	1e-99
Q86VH2		1401	Kinesin-like protein KIF2	no	no	0.416	0.263	0.452	8e-89

>sp\|O95239\|KIF4A_HUMAN Chromosome-associated kinesin KIF4A OS=Homo sapiens GN=KIF4A PE=1 SV=3	Back alignment and function desciption

 Score =  484 bits (1247), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 351/921 (38%), Positives = 500/921 (54%), Gaps = 137/921 (14%)

Query: 10  VKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIGT-HSFTFDHVYGNGGSPSSAMFGEC 68
           V+VA+  RPL+  E ++GC+ C++   G PQV +GT  SFT+D V+ +  +    +F   
Sbjct: 10  VRVALRCRPLVPKEISEGCQMCLSFVPGEPQVVVGTDKSFTYDFVF-DPSTEQEEVFNTA 68

Query: 69  VAPLVDGLFQGYNATVLAYGQTGSGKTYTMG---TGLREGFQT-GLIPQVMNALFNKIET 124
           VAPL+ G+F+GYNATVLAYGQTGSGKTY+MG   T  +E   T G+IP+V+  LF +I+ 
Sbjct: 69  VAPLIKGVFKGYNATVLAYGQTGSGKTYSMGGAYTAEQENEPTVGVIPRVIQLLFKEIDK 128

Query: 125 LRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGHAGKVSISGRPPIQIRESSNGV 184
            +   EF L VS++EI  EE+ DLL                      +  I IRE     
Sbjct: 129 -KSDFEFTLKVSYLEIYNEEILDLL-----------------CPSREKAQINIREDPKEG 170

Query: 185 ITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSVS 244
           I + G TE  V    +  +CLEQG+ SR   ST MN+QSSRSHAIFTI+LEQ +K    S
Sbjct: 171 IKIVGLTEKTVLVALDTVSCLEQGNNSRTVASTAMNSQSSRSHAIFTISLEQRKK----S 226

Query: 245 PDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISAL 304
             N +         F +KLHLVDLAGSER K+T ++G RLKEGI+INRGLL LGNVISAL
Sbjct: 227 DKNSS---------FRSKLHLVDLAGSERQKKTKAEGDRLKEGININRGLLCLGNVISAL 277

Query: 305 GDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRAR 364
           GD+KK   G  VPYRDSKLTRLLQDSLGGNS T+MIAC+SPAD N EE+LNTL+YA+RAR
Sbjct: 278 GDDKK---GGFVPYRDSKLTRLLQDSLGGNSHTLMIACVSPADSNLEETLNTLRYADRAR 334

Query: 365 NIQNKPVVNRDLISSDMQKLRQQLKYLQAELCARAGGA--------PSDEVQVL------ 410
            I+NKP+VN D  ++++  L+QQ++ LQ  L    GG         PS+ +Q L      
Sbjct: 335 KIKNKPIVNIDPQTAELNHLKQQVQQLQVLLLQAHGGTLPGSITVEPSENLQSLMEKNQS 394

Query: 411 ---------KG-------------RIAWLEATNEDLCQELHEYRSRRAVVEHCGTDAQEG 448
                    +G             RI   E  NE +  +L E R   A    C  D Q+ 
Sbjct: 395 LVEENEKLSRGLSEAAGQTAQMLERIILTEQANEKMNAKLEELRQHAA----CKLDLQKL 450

Query: 449 PVSFVKSDGLKRGFQSI-----------DSSDYQMDEAVSDGNSSEIE-EVAKE------ 490
            V  ++   LK   + I           D +   M  A+      E + E + E      
Sbjct: 451 -VETLEDQELKENVEIICNLQQLITQLSDETVACMAAAIDTAVEQEAQVETSPETSRSSD 509

Query: 491 ---WEHALWQNTMDKELNELNKRLEQKESEMKLFGDIDT--EALRHHFGKKIMELEEEKR 545
               +HAL Q  M KEL ELNK L  KE+  +     D+  + +++ +   I ELE E  
Sbjct: 510 AFTTQHALRQAQMSKELVELNKALALKEALARKMTQNDSQLQPIQYQYQDNIKELELEVI 569

Query: 546 IVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKH 605
            +Q+E++ L+ E++   A  D +  K+ +    +L+ LE QI +LKKK   Q +LLK K 
Sbjct: 570 NLQKEKEELVLELQ--TAKKDANQAKLSERRRKRLQELEGQIADLKKKLNEQSKLLKLKE 627

Query: 606 KSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERH 665
            ++    +L  EI+ +K Q+VQL  ++K++AE+FRQWK  ++KE+++LK+  RK ++E  
Sbjct: 628 STERTVSKLNQEIRMMKNQRVQLMRQMKEDAEKFRQWKQKKDKEVIQLKERDRKRQYELL 687

Query: 666 KLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSA-RENSVNSTGYTTPTGQSNEKS 724
           KLE   Q+Q  VL+RKTEEAA A KRLK+ L+ ++  A +     S G      +     
Sbjct: 688 KLERNFQKQSNVLRRKTEEAAAANKRLKDALQKQREVADKRKETQSRGMEGTAAR----- 742

Query: 725 LQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGHSPQRGKNGHS 784
           ++ WL +E+EV  +  E +        +   L D   + + V QL     S   G+N   
Sbjct: 743 VKNWLGNEIEVMVSTEEAK------RHLNDLLEDRKILAQDVAQLKEKKES---GENPPP 793

Query: 785 RLS-------------SLSPNARMERIASLENMLNMSSKALVEMASQLSEAEERERALVG 831
           +L              S S ++  ++I SLE  +   S  + ++  +L +AE  +R    
Sbjct: 794 KLRRRTFSLTEVRGQVSESEDSITKQIESLETEMEFRSAQIADLQQKLLDAESEDRP--- 850

Query: 832 RGRWNHLRFMGDAKNLLQYMF 852
           + RW ++  + +AK  L+Y+ 
Sbjct: 851 KQRWENIATILEAKCALKYLI 871

Motor protein that translocates PRC1 to the plus ends of interdigitating spindle microtubules during the metaphase to anaphase transition, an essential step for the formation of an organized central spindle midzone and midbody and for successful cytokinesis. May play a role in mitotic chromosomal positioning and bipolar spindle stabilization.
Homo sapiens (taxid: 9606)

>sp\|Q91784\|KIF4_XENLA Chromosome-associated kinesin KIF4 OS=Xenopus laevis GN=kif4 PE=2 SV=1	Back alignment and function description

>sp\|P33174\|KIF4_MOUSE Chromosome-associated kinesin KIF4 OS=Mus musculus GN=Kif4 PE=2 SV=3	Back alignment and function description

>sp\|Q2VIQ3\|KIF4B_HUMAN Chromosome-associated kinesin KIF4B OS=Homo sapiens GN=KIF4B PE=2 SV=2	Back alignment and function description

>sp\|Q90640\|KIF4_CHICK Chromosome-associated kinesin KIF4 OS=Gallus gallus GN=KIF4 PE=2 SV=1	Back alignment and function description

>sp\|Q7Z4S6\|KI21A_HUMAN Kinesin-like protein KIF21A OS=Homo sapiens GN=KIF21A PE=1 SV=2	Back alignment and function description

>sp\|Q9QXL1\|KI21B_MOUSE Kinesin-like protein KIF21B OS=Mus musculus GN=Kif21b PE=1 SV=2	Back alignment and function description

>sp\|O75037\|KI21B_HUMAN Kinesin-like protein KIF21B OS=Homo sapiens GN=KIF21B PE=1 SV=2	Back alignment and function description

>sp\|Q9QXL2\|KI21A_MOUSE Kinesin-like protein KIF21A OS=Mus musculus GN=Kif21a PE=1 SV=2	Back alignment and function description

>sp\|Q86VH2\|KIF27_HUMAN Kinesin-like protein KIF27 OS=Homo sapiens GN=KIF27 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		887
296082375		1032	unnamed protein product [Vitis vinifera]	0.962	0.827	0.820	0.0
359480793		1031	PREDICTED: chromosome-associated kinesin	0.961	0.827	0.820	0.0
255585095		1028	Chromosome-associated kinesin KLP1, puta	0.958	0.826	0.814	0.0
255538224		1067	Kinesin heavy chain, putative [Ricinus c	0.962	0.800	0.798	0.0
147856290		881	hypothetical protein VITISV_027461 [Viti	0.950	0.956	0.793	0.0
302142281		1077	unnamed protein product [Vitis vinifera]	0.961	0.792	0.805	0.0
359492582		1071	PREDICTED: chromosome-associated kinesin	0.960	0.795	0.805	0.0
147790676		1094	hypothetical protein VITISV_001140 [Viti	0.960	0.778	0.789	0.0
224096722		1036	predicted protein [Populus trichocarpa]	0.967	0.828	0.799	0.0
224067254		1055	predicted protein [Populus trichocarpa]	0.957	0.804	0.778	0.0

>gi\|296082375\|emb\|CBI21380.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1449 bits (3751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 703/857 (82%), Positives = 776/857 (90%), Gaps = 3/857 (0%)

Query: 4   ASENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIGTHSFTFDHVYGNGGSPSSA 63
           A ENCSVKVAVH+RPLIGDER QGC++CV V HG PQVQIGTHSFTFDHVYGN GSPSSA
Sbjct: 3   APENCSVKVAVHIRPLIGDERLQGCEDCVTVVHGKPQVQIGTHSFTFDHVYGNSGSPSSA 62

Query: 64  MFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIE 123
           MF EC+APLVDGLFQGYNATVLAYGQTGSGKTYTMGTG ++G QTGLIPQ MNALFNKIE
Sbjct: 63  MFEECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGCQTGLIPQAMNALFNKIE 122

Query: 124 TLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGHAGKVSISGRPPIQIRESSNG 183
           TL+HQ EFQLHVSFIEILKEEVRDLL+S +VSK    NGHA ++++ GRPPIQIRE+SNG
Sbjct: 123 TLKHQSEFQLHVSFIEILKEEVRDLLESPTVSKPEATNGHAARIAVPGRPPIQIRETSNG 182

Query: 184 VITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSV 243
           VITLAGSTEV+V+TL+EMA+CLEQGS SRATGSTNMNNQSSRSHAIFTI+LEQMRKLH  
Sbjct: 183 VITLAGSTEVSVSTLKEMASCLEQGSFSRATGSTNMNNQSSRSHAIFTISLEQMRKLHPT 242

Query: 244 SPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISA 303
            P +   +E+M EEY  AKLHLVDLAGSERAKRTGSDGLR KEGIHIN+GLLALGNVISA
Sbjct: 243 FPGDNCSNEEMGEEYLSAKLHLVDLAGSERAKRTGSDGLRFKEGIHINKGLLALGNVISA 302

Query: 304 LGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRA 363
           LGDEKKR+EGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEE+LNTLKYANRA
Sbjct: 303 LGDEKKRKEGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEETLNTLKYANRA 362

Query: 364 RNIQNKPVVNRDLISSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNED 423
           RNIQNKPVVNRDL+S++MQK+RQQL+YLQAELCAR GG  SDE+QVLK RI+WLE TNE+
Sbjct: 363 RNIQNKPVVNRDLVSNEMQKMRQQLEYLQAELCARRGGTSSDEMQVLKERISWLETTNEE 422

Query: 424 LCQELHEYRSRRAVVEHCGTDAQEGPVSFVKSDGLKRGFQSIDSSDYQMDEAVSDGNSSE 483
           LC+ELHEYRSR AVV  C ++AQEG + FVK+DGLKRG QS++SSDY M E +S  +S E
Sbjct: 423 LCRELHEYRSRCAVVGQCESNAQEGSICFVKTDGLKRGLQSMESSDYPMGEVISGEDSRE 482

Query: 484 IEEV-AKEWEHALWQNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEE 542
           ++EV A+EWEHAL QNTMDKELNELNKRLEQKESEMKLFG  DTEAL+ HFGKKIMELEE
Sbjct: 483 MDEVAAREWEHALLQNTMDKELNELNKRLEQKESEMKLFGG-DTEALKQHFGKKIMELEE 541

Query: 543 EKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLK 602
           EKRIVQQERDRLLAE+E+LAA SDG  QK+QD H  KLKALEAQIL+LKKKQE+QV+LLK
Sbjct: 542 EKRIVQQERDRLLAEVESLAATSDGQRQKVQDVHAQKLKALEAQILDLKKKQENQVQLLK 601

Query: 603 QKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEF 662
           QK KSDEA KRLQ EIQSIKAQKVQLQ+KIKQEAEQFRQWKASREKELL+LKKEGR+NE+
Sbjct: 602 QKQKSDEATKRLQDEIQSIKAQKVQLQHKIKQEAEQFRQWKASREKELLQLKKEGRRNEY 661

Query: 663 ERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNE 722
           ERHKL+ALNQRQKMVLQRKTEEAA+ATKRLKELLEARKSSAR+NSV S G+ TPTG +NE
Sbjct: 662 ERHKLQALNQRQKMVLQRKTEEAAVATKRLKELLEARKSSARDNSVYSNGH-TPTGLNNE 720

Query: 723 KSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGHSPQRGKNG 782
           KSLQ+WL+HELEV  NVHEVRF+YEKQSQV+AALA+EL +LKQVDQLSLNG SP RGKNG
Sbjct: 721 KSLQRWLDHELEVMVNVHEVRFEYEKQSQVRAALAEELGLLKQVDQLSLNGLSPPRGKNG 780

Query: 783 HSRLSSLSPNARMERIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMG 842
           HSR+SS+SPNAR+ RIA+LENMLN+SS ALV MASQLSEAEERERA  GRGRWN LR MG
Sbjct: 781 HSRMSSMSPNARLARIATLENMLNISSNALVAMASQLSEAEERERAFTGRGRWNQLRSMG 840

Query: 843 DAKNLLQYMFNVAAETR 859
           DAKNLLQYMFN A + R
Sbjct: 841 DAKNLLQYMFNAAGDAR 857

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359480793\|ref\|XP_002278379.2\| PREDICTED: chromosome-associated kinesin KIF4-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255585095\|ref\|XP_002533253.1\| Chromosome-associated kinesin KLP1, putative [Ricinus communis] gi\|223526909\|gb\|EEF29115.1\| Chromosome-associated kinesin KLP1, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|255538224\|ref\|XP_002510177.1\| Kinesin heavy chain, putative [Ricinus communis] gi\|223550878\|gb\|EEF52364.1\| Kinesin heavy chain, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|147856290\|emb\|CAN79643.1\| hypothetical protein VITISV_027461 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|302142281\|emb\|CBI19484.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359492582\|ref\|XP_002282968.2\| PREDICTED: chromosome-associated kinesin KIF4A-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147790676\|emb\|CAN61020.1\| hypothetical protein VITISV_001140 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224096722\|ref\|XP_002310712.1\| predicted protein [Populus trichocarpa] gi\|222853615\|gb\|EEE91162.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224067254\|ref\|XP_002302432.1\| predicted protein [Populus trichocarpa] gi\|222844158\|gb\|EEE81705.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		887
TAIR\|locus:2160912		1035	FRA1 "FRAGILE FIBER 1" [Arabid	0.958	0.821	0.733	0.0
TAIR\|locus:2074855		1051	KICP-02 [Arabidopsis thaliana	0.951	0.803	0.703	1.6e-306
TAIR\|locus:2173537		1294	AT5G60930 [Arabidopsis thalian	0.818	0.561	0.440	6.1e-144
UNIPROTKB\|O95239		1232	KIF4A "Chromosome-associated k	0.678	0.488	0.330	2.7e-108
UNIPROTKB\|K7GQ60		1210	KIF4A "Uncharacterized protein	0.680	0.499	0.325	4e-108
MGI\|MGI:109234		1668	Kif21b "kinesin family member	0.426	0.226	0.496	4.5e-108
UNIPROTKB\|F1RTL0		1234	KIF4A "Uncharacterized protein	0.680	0.489	0.325	4.7e-108
UNIPROTKB\|F1PDX5		1234	KIF4A "Uncharacterized protein	0.679	0.488	0.325	4.3e-107
MGI\|MGI:108389		1231	Kif4 "kinesin family member 4"	0.678	0.489	0.324	5.1e-107
UNIPROTKB\|E9PSJ3		1231	Kif4 "Protein Kif4" [Rattus no	0.678	0.489	0.327	5.1e-107

TAIR\|locus:2160912 FRA1 "FRAGILE FIBER 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3160 (1117.4 bits), Expect = 0., P = 0.
 Identities = 631/860 (73%), Positives = 724/860 (84%)

Query:     6 ENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIGTHSFTFDHVYGNGGSPSSAMF 65
             ++CSVKVAVH+RPLIGDER QGC++CV V  G PQVQIG+HSFTFDHVYG+ GSPS+ M+
Sbjct:     8 DDCSVKVAVHIRPLIGDERIQGCQDCVTVVTGKPQVQIGSHSFTFDHVYGSSGSPSTEMY 67

Query:    66 GECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETL 125
              EC APLVDGLFQGYNATVLAYGQTGSGKTYTMGTG  +  QTG+IPQVMNALF KIETL
Sbjct:    68 EECAAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGCGDSSQTGIIPQVMNALFTKIETL 127

Query:   126 RHQMEFQLHVSFIEILKEEVRDLLDXXXXXXXXTAN-GHAGKVS-ISGRPPIQIRESSNG 183
             + Q+EFQ+HVSFIEI KEEV+DLLD        T N GH GKV+ + G+PPIQIRE+SNG
Sbjct:   128 KQQIEFQIHVSFIEIHKEEVQDLLDPCTVNKSDTNNTGHVGKVAHVPGKPPIQIRETSNG 187

Query:   184 VITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSV 243
             VITLAGSTEV+V+TL+EMAACL+QGS+SRATGSTNMNNQSSRSHAIFTIT+EQMRK+++ 
Sbjct:   188 VITLAGSTEVSVSTLKEMAACLDQGSVSRATGSTNMNNQSSRSHAIFTITVEQMRKINTD 247

Query:   244 SPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISA 303
             SP+NG  +  + EEY CAKLHLVDLAGSERAKRTGSDGLR KEG+HIN+GLLALGNVISA
Sbjct:   248 SPENGAYNGSLKEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINKGLLALGNVISA 307

Query:   304 LGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRA 363
             LGDEKKR++G HVPYRDSKLTRLLQDSLGGNS+TVMIACISPADINAEE+LNTLKYANRA
Sbjct:   308 LGDEKKRKDGAHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRA 367

Query:   364 RNIQNKPVVNRDLISSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNED 423
             RNI+NKPVVNRD +SS+M K+RQQ++YLQAEL  R GG+   EVQ LK RI WLE  NE+
Sbjct:   368 RNIRNKPVVNRDPVSSEMLKMRQQVEYLQAELSLRTGGSSCAEVQALKERIVWLETANEE 427

Query:   424 LCQELHEYRSRRAVVEHCGTDAQE----GPVSFVKSDGLKRGFQSIDSSDYQMDEAVSDG 479
             LC+ELHEYRSR   VEH   D ++      V  V+ DGLKR   SI+SS+Y M EA + G
Sbjct:   428 LCRELHEYRSRCPGVEHSEKDFKDIRADDIVGSVRPDGLKRSLHSIESSNYPMVEATT-G 486

Query:   480 NSSEIEEVAKEWEHALWQNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIME 539
             +S EI+E AKEWEH L QN+MDKEL ELN+RLE+KESEMKLF   D  AL+ HFGKKI E
Sbjct:   487 DSREIDEEAKEWEHKLLQNSMDKELYELNRRLEEKESEMKLFDGYDPAALKQHFGKKIAE 546

Query:   540 LEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVE 599
             +E+EKR VQ+ER+RLLAEIENLA  SDG  QK+QD H   LKALEAQIL+LKKKQESQV+
Sbjct:   547 VEDEKRSVQEERNRLLAEIENLA--SDGQAQKLQDVHAQNLKALEAQILDLKKKQESQVQ 604

Query:   600 LLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASRXXXXXXXXXXGRK 659
             LLKQK KSD+AA+RLQ EIQSIKAQKVQLQ+++KQEAEQFRQWKASR          GRK
Sbjct:   605 LLKQKQKSDDAARRLQDEIQSIKAQKVQLQHRMKQEAEQFRQWKASREKELLQLRKEGRK 664

Query:   660 NEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQ 719
             +E+ERHKL+ALNQRQKMVLQRKTEEAA+ATKRLKELLEARKSS RE+S  + G+ T  GQ
Sbjct:   665 SEYERHKLQALNQRQKMVLQRKTEEAAMATKRLKELLEARKSSPREHSAGTNGFGT-NGQ 723

Query:   720 SNEKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGHSPQRG 779
             +NEKSLQ+WL+HELEV  NVHEVR +YEKQS V+AALA+EL +L+QVD+ ++ G SP RG
Sbjct:   724 TNEKSLQRWLDHELEVMVNVHEVRHEYEKQSHVRAALAEELAVLRQVDEFAVKGLSPPRG 783

Query:   780 KNGHSRLSSLSPNARMERIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLR 839
             KNG +R SSLSPNARM RI+SLENML +SS +LV MASQLSEAEERERA   RGRWN LR
Sbjct:   784 KNGFARASSLSPNARMARISSLENMLVISSNSLVAMASQLSEAEERERAFTNRGRWNQLR 843

Query:   840 FMGDAKNLLQYMFNVAAETR 859
              MG+AKNLLQYMFN  AETR
Sbjct:   844 SMGEAKNLLQYMFNSLAETR 863

GO:0003777 "microtubule motor activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0010215 "cellulose microfibril organization" evidence=IMP

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR\|locus:2074855 KICP-02 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2173537 AT5G60930 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|O95239 KIF4A "Chromosome-associated kinesin KIF4A" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|K7GQ60 KIF4A "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

MGI\|MGI:109234 Kif21b "kinesin family member 21B" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RTL0 KIF4A "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PDX5 KIF4A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

MGI\|MGI:108389 Kif4 "kinesin family member 4" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|E9PSJ3 Kif4 "Protein Kif4" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		887
cd01372		341	cd01372, KISc_KIF4, Kinesin motor domain, KIF4-lik	0.0
smart00129		335	smart00129, KISc, Kinesin motor, catalytic domain	1e-136
pfam00225		326	pfam00225, Kinesin, Kinesin motor domain	1e-130
cd00106		328	cd00106, KISc, Kinesin motor domain	1e-122
cd01365		356	cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, K	1e-108
cd01370		338	cd01370, KISc_KIP3_like, Kinesin motor domain, KIP	1e-107
cd01371		333	cd01371, KISc_KIF3, Kinesin motor domain, kinesins	1e-102
cd01364		352	cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC	1e-100
cd01366		329	cd01366, KISc_C_terminal, Kinesin motor domain, KI	3e-99
cd01369		325	cd01369, KISc_KHC_KIF5, Kinesin motor domain, kine	1e-98
cd01374		321	cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E	4e-95
cd01367		322	cd01367, KISc_KIF2_like, Kinesin motor domain, KIF	1e-85
COG5059		568	COG5059, KIP1, Kinesin-like protein [Cytoskeleton]	5e-78
cd01373		337	cd01373, KISc_KLP2_like, Kinesin motor domain, KLP	3e-76
cd01375		334	cd01375, KISc_KIF9_like, Kinesin motor domain, KIF	5e-73
cd01368		345	cd01368, KISc_KIF23_like, Kinesin motor domain, KI	2e-67
cd01376		319	cd01376, KISc_KID_like, Kinesin motor domain, KIF2	6e-65
PLN03188		1320	PLN03188, PLN03188, kinesin-12 family protein; Pro	2e-64
cd01363		186	cd01363, Motor_domain, Myosin and Kinesin motor do	5e-37
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	8e-10
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	1e-08
cd01363		186	cd01363, Motor_domain, Myosin and Kinesin motor do	2e-08
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-08
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-08
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	7e-08
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-07
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-07
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-07
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	1e-06
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-06
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-06
pfam02463		1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	1e-05
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-05
PRK05771		646	PRK05771, PRK05771, V-type ATP synthase subunit I;	5e-05
COG4942		420	COG4942, COG4942, Membrane-bound metallopeptidase	5e-05
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	6e-05
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	6e-05
pfam13868		349	pfam13868, Trichoplein, Tumour suppressor, Mitosta	7e-05
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	9e-05
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	9e-05
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	4e-04
PRK12704		520	PRK12704, PRK12704, phosphodiesterase; Provisional	4e-04
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-04
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	6e-04
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	7e-04
PRK11448		1123	PRK11448, hsdR, type I restriction enzyme EcoKI su	7e-04
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.001
TIGR03545		555	TIGR03545, TIGR03545, TIGR03545 family protein	0.001
COG3064		387	COG3064, TolA, Membrane protein involved in colici	0.001
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.002
pfam02463		1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	0.002
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.002
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.002
COG1340		294	COG1340, COG1340, Uncharacterized archaeal coiled-	0.002
PRK00409		782	PRK00409, PRK00409, recombination and DNA strand e	0.003
COG4487		438	COG4487, COG4487, Uncharacterized protein conserve	0.003

>gnl\|CDD\|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily	Back alignment and domain information

 Score =  559 bits (1443), Expect = 0.0
 Identities = 218/364 (59%), Positives = 257/364 (70%), Gaps = 27/364 (7%)

Query: 8   CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIGT-HSFTFDHVYGNGGSPSSAMFG 66
            SV+VAV VRPL+  E  +GC+ CV+V  G PQV +GT  SFTFD+V+    S    ++ 
Sbjct: 1   SSVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGTDKSFTFDYVFDPSTSQE-EVYN 59

Query: 67  ECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGF---QTGLIPQVMNALFNKIE 123
            CVAPLVDGLF+GYNATVLAYGQTGSGKTYTMGT         + G+IP+ +  +F KI+
Sbjct: 60  TCVAPLVDGLFEGYNATVLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKID 119

Query: 124 TLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGHAGKVSISGRPPIQIRESSNG 183
             + + +FQL VSF+E+  EEVRDLL                  S S + PIQIRE S G
Sbjct: 120 EKKDEPDFQLKVSFLELYNEEVRDLLSP----------------STSEKSPIQIREDSKG 163

Query: 184 VITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSV 243
            I + G TEV VN+ QE+ +CLEQGSLSR T ST MN+QSSRSHAIFTITLEQ RK   +
Sbjct: 164 NIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPI 223

Query: 244 SPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISA 303
           +P +G    D       +K H VDLAGSER K+TG+ G RLKEGI IN GLLALGNVISA
Sbjct: 224 APMSG----DDKNSTLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISA 279

Query: 304 LGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRA 363
           LGDE K+  G HVPYRDSKLTRLLQDSLGGNS T+MIAC+SPAD N EE+LNTLKYANRA
Sbjct: 280 LGDESKK--GSHVPYRDSKLTRLLQDSLGGNSHTLMIACVSPADSNFEETLNTLKYANRA 337

Query: 364 RNIQ 367
           RNI+
Sbjct: 338 RNIK 341

Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 341

>gnl\|CDD\|214526 smart00129, KISc, Kinesin motor, catalytic domain	Back alignment and domain information

>gnl\|CDD\|215803 pfam00225, Kinesin, Kinesin motor domain	Back alignment and domain information

>gnl\|CDD\|238054 cd00106, KISc, Kinesin motor domain	Back alignment and domain information

>gnl\|CDD\|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like proteins	Back alignment and domain information

>gnl\|CDD\|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup	Back alignment and domain information

>gnl\|CDD\|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like proteins	Back alignment and domain information

>gnl\|CDD\|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division	Back alignment and domain information

>gnl\|CDD\|238662 cd01366, KISc_C_terminal, Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins	Back alignment and domain information

>gnl\|CDD\|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup	Back alignment and domain information

>gnl\|CDD\|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis	Back alignment and domain information

>gnl\|CDD\|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group	Back alignment and domain information

>gnl\|CDD\|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton]	Back alignment and domain information

>gnl\|CDD\|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup	Back alignment and domain information

>gnl\|CDD\|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling	Back alignment and domain information

>gnl\|CDD\|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like subgroup	Back alignment and domain information

>gnl\|CDD\|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like subgroup	Back alignment and domain information

>gnl\|CDD\|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional	Back alignment and domain information

>gnl\|CDD\|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated	Back alignment and domain information

>gnl\|CDD\|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|237177 PRK12704, PRK12704, phosphodiesterase; Provisional	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R; Provisional	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|234252 TIGR03545, TIGR03545, TIGR03545 family protein	Back alignment and domain information

>gnl\|CDD\|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|224259 COG1340, COG1340, Uncharacterized archaeal coiled-coil protein [Function unknown]	Back alignment and domain information

>gnl\|CDD\|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	Back alignment and domain information

>gnl\|CDD\|226889 COG4487, COG4487, Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		887
KOG0244		913	consensus Kinesin-like protein [Cytoskeleton]	100.0
KOG0243		1041	consensus Kinesin-like protein [Cytoskeleton]	100.0
KOG0245		1221	consensus Kinesin-like protein [Cytoskeleton]	100.0
KOG4280		574	consensus Kinesin-like protein [Cytoskeleton]	100.0
KOG0240		607	consensus Kinesin (SMY1 subfamily) [Cytoskeleton]	100.0
PLN03188		1320	kinesin-12 family protein; Provisional	100.0
KOG0242		675	consensus Kinesin-like protein [Cytoskeleton]	100.0
KOG0241		1714	consensus Kinesin-like protein [Cytoskeleton]	100.0
cd01373		337	KISc_KLP2_like Kinesin motor domain, KLP2-like sub	100.0
cd01370		338	KISc_KIP3_like Kinesin motor domain, KIP3-like sub	100.0
cd01368		345	KISc_KIF23_like Kinesin motor domain, KIF23-like s	100.0
cd01365		356	KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like p	100.0
cd01364		352	KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spind	100.0
cd01372		341	KISc_KIF4 Kinesin motor domain, KIF4-like subfamil	100.0
cd01371		333	KISc_KIF3 Kinesin motor domain, kinesins II or KIF	100.0
cd01369		325	KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy	100.0
cd01367		322	KISc_KIF2_like Kinesin motor domain, KIF2-like gro	100.0
cd01376		319	KISc_KID_like Kinesin motor domain, KIF22/Kid-like	100.0
cd01374		321	KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like	100.0
cd01375		334	KISc_KIF9_like Kinesin motor domain, KIF9-like sub	100.0
cd01366		329	KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/	100.0
smart00129		335	KISc Kinesin motor, catalytic domain. ATPase. Micr	100.0
KOG0239		670	consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	100.0
PF00225		335	Kinesin: Kinesin motor domain; InterPro: IPR001752	100.0
KOG0246		676	consensus Kinesin-like protein [Cytoskeleton]	100.0
cd00106		328	KISc Kinesin motor domain. This catalytic (head) d	100.0
KOG0247		809	consensus Kinesin-like protein [Cytoskeleton]	100.0
COG5059		568	KIP1 Kinesin-like protein [Cytoskeleton]	100.0
cd01363		186	Motor_domain Myosin and Kinesin motor domain. Thes	100.0
KOG0612		1317	consensus Rho-associated, coiled-coil containing p	98.63
KOG0161		1930	consensus Myosin class II heavy chain [Cytoskeleto	98.17
COG5059		568	KIP1 Kinesin-like protein [Cytoskeleton]	98.17
KOG0161		1930	consensus Myosin class II heavy chain [Cytoskeleto	98.11
TIGR02169		1164	SMC_prok_A chromosome segregation protein SMC, pri	97.71
PF12128		1201	DUF3584: Protein of unknown function (DUF3584); In	97.64
PF07888		546	CALCOCO1: Calcium binding and coiled-coil domain (	97.63
KOG0964		1200	consensus Structural maintenance of chromosome pro	97.59
PRK11637		428	AmiB activator; Provisional	97.51
PF00038		312	Filament: Intermediate filament protein; InterPro:	97.48
PRK02224		880	chromosome segregation protein; Provisional	97.42
PRK11637		428	AmiB activator; Provisional	97.4
PRK03918		880	chromosome segregation protein; Provisional	97.34
KOG4643		1195	consensus Uncharacterized coiled-coil protein [Fun	97.26
PRK02224		880	chromosome segregation protein; Provisional	97.2
PF09726		697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.14
TIGR02168		1179	SMC_prok_B chromosome segregation protein SMC, com	97.14
KOG4643		1195	consensus Uncharacterized coiled-coil protein [Fun	97.13
TIGR00606		1311	rad50 rad50. This family is based on the phylogeno	97.12
KOG4673		961	consensus Transcription factor TMF, TATA element m	97.12
TIGR02169		1164	SMC_prok_A chromosome segregation protein SMC, pri	97.12
COG1196		1163	Smc Chromosome segregation ATPases [Cell division	97.02
TIGR02168		1179	SMC_prok_B chromosome segregation protein SMC, com	96.99
PF10174		775	Cast: RIM-binding protein of the cytomatrix active	96.98
COG1196		1163	Smc Chromosome segregation ATPases [Cell division	96.86
PF07888		546	CALCOCO1: Calcium binding and coiled-coil domain (	96.8
KOG0250		1074	consensus DNA repair protein RAD18 (SMC family pro	96.79
TIGR00606		1311	rad50 rad50. This family is based on the phylogeno	96.69
PF00261		237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	96.69
PF09726		697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.69
PF05667		594	DUF812: Protein of unknown function (DUF812); Inte	96.65
COG0556		663	UvrB Helicase subunit of the DNA excision repair c	96.63
KOG0977		546	consensus Nuclear envelope protein lamin, intermed	96.5
KOG0933		1174	consensus Structural maintenance of chromosome pro	96.5
PRK03918		880	chromosome segregation protein; Provisional	96.49
KOG4674		1822	consensus Uncharacterized conserved coiled-coil pr	96.48
KOG4674		1822	consensus Uncharacterized conserved coiled-coil pr	96.46
KOG0996		1293	consensus Structural maintenance of chromosome pro	96.34
PF12128		1201	DUF3584: Protein of unknown function (DUF3584); In	96.27
PF10174		775	Cast: RIM-binding protein of the cytomatrix active	96.27
PHA02562		562	46 endonuclease subunit; Provisional	96.17
KOG0933		1174	consensus Structural maintenance of chromosome pro	96.14
PF09755		310	DUF2046: Uncharacterized conserved protein H4 (DUF	96.14
KOG0996		1293	consensus Structural maintenance of chromosome pro	95.94
KOG2129		552	consensus Uncharacterized conserved protein H4 [Fu	95.89
KOG4673		961	consensus Transcription factor TMF, TATA element m	95.84
KOG0963		629	consensus Transcription factor/CCAAT displacement	95.74
KOG0977		546	consensus Nuclear envelope protein lamin, intermed	95.74
COG1579		239	Zn-ribbon protein, possibly nucleic acid-binding [	95.72
PRK04863		1486	mukB cell division protein MukB; Provisional	95.66
KOG0964		1200	consensus Structural maintenance of chromosome pro	95.58
PHA02562		562	46 endonuclease subunit; Provisional	95.56
PF05667		594	DUF812: Protein of unknown function (DUF812); Inte	95.3
COG4942		420	Membrane-bound metallopeptidase [Cell division and	94.98
KOG0976		1265	consensus Rho/Rac1-interacting serine/threonine ki	94.73
KOG1029		1118	consensus Endocytic adaptor protein intersectin [S	94.69
PRK01156		895	chromosome segregation protein; Provisional	94.55
KOG0971		1243	consensus Microtubule-associated protein dynactin	94.49
KOG0250		1074	consensus DNA repair protein RAD18 (SMC family pro	94.4
PF12718		143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	94.17
KOG0995		581	consensus Centromere-associated protein HEC1 [Cell	94.15
KOG0971		1243	consensus Microtubule-associated protein dynactin	94.06
KOG0976		1265	consensus Rho/Rac1-interacting serine/threonine ki	93.98
PF00308		219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	93.92
KOG0994		1758	consensus Extracellular matrix glycoprotein Lamini	93.87
COG1579		239	Zn-ribbon protein, possibly nucleic acid-binding [	93.81
COG4942		420	Membrane-bound metallopeptidase [Cell division and	93.72
KOG1029		1118	consensus Endocytic adaptor protein intersectin [S	93.71
COG2805		353	PilT Tfp pilus assembly protein, pilus retraction	93.68
COG3883		265	Uncharacterized protein conserved in bacteria [Fun	93.62
PF08826		61	DMPK_coil: DMPK coiled coil domain like; InterPro:	93.5
PRK06893		229	DNA replication initiation factor; Validated	93.45
PF14988		206	DUF4515: Domain of unknown function (DUF4515)	93.42
PF05010		207	TACC: Transforming acidic coiled-coil-containing p	93.36
PF15070		617	GOLGA2L5: Putative golgin subfamily A member 2-lik	93.29
KOG0946		970	consensus ER-Golgi vesicle-tethering protein p115	93.09
PF04849		306	HAP1_N: HAP1 N-terminal conserved region; InterPro	93.07
PF09755		310	DUF2046: Uncharacterized conserved protein H4 (DUF	92.91
PRK09039		343	hypothetical protein; Validated	92.84
PRK11281		1113	hypothetical protein; Provisional	92.66
PF00261		237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	92.53
PF12325		120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	92.46
PF00038		312	Filament: Intermediate filament protein; InterPro:	92.29
KOG4809		654	consensus Rab6 GTPase-interacting protein involved	92.22
KOG4403		575	consensus Cell surface glycoprotein STIM, contains	92.2
PRK06620		214	hypothetical protein; Validated	92.03
TIGR03007		498	pepcterm_ChnLen polysaccharide chain length determ	92.02
PF08317		325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	91.62
KOG0963		629	consensus Transcription factor/CCAAT displacement	91.28
PRK09039		343	hypothetical protein; Validated	91.23
COG2804		500	PulE Type II secretory pathway, ATPase PulE/Tfp pi	90.81
PRK14086		617	dnaA chromosomal replication initiation protein; P	90.69
PRK09087		226	hypothetical protein; Validated	90.38
PF09787		511	Golgin_A5: Golgin subfamily A member 5; InterPro:	90.36
PRK01156		895	chromosome segregation protein; Provisional	90.15
TIGR01005		754	eps_transp_fam exopolysaccharide transport protein	90.0
PRK14088		440	dnaA chromosomal replication initiation protein; P	89.92
PF12325		120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	89.81
KOG0994		1758	consensus Extracellular matrix glycoprotein Lamini	89.81
KOG0980		980	consensus Actin-binding protein SLA2/Huntingtin-in	89.29
KOG0804		493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	89.18
COG1474		366	CDC6 Cdc6-related protein, AAA superfamily ATPase	89.07
PRK05642		234	DNA replication initiation factor; Validated	88.99
COG3883		265	Uncharacterized protein conserved in bacteria [Fun	88.95
KOG0962		1294	consensus DNA repair protein RAD50, ABC-type ATPas	88.86
PF13851		201	GAS: Growth-arrest specific micro-tubule binding	88.84
PF04851		184	ResIII: Type III restriction enzyme, res subunit;	88.76
PRK04778		569	septation ring formation regulator EzrA; Provision	88.48
COG5185		622	HEC1 Protein involved in chromosome segregation, i	88.07
PRK00149		450	dnaA chromosomal replication initiation protein; R	88.01
PF15254		861	CCDC14: Coiled-coil domain-containing protein 14	88.01
PF01576		859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	87.71
TIGR00362		405	DnaA chromosomal replication initiator protein Dna	87.7
PF05701		522	WEMBL: Weak chloroplast movement under blue light;	87.47
PRK12377		248	putative replication protein; Provisional	87.43
PF14988		206	DUF4515: Domain of unknown function (DUF4515)	87.39
PRK00411		394	cdc6 cell division control protein 6; Reviewed	87.35
TIGR00631		655	uvrb excinuclease ABC, B subunit. This family is b	87.15
COG0593		408	DnaA ATPase involved in DNA replication initiation	86.97
PRK14087		450	dnaA chromosomal replication initiation protein; P	86.67
TIGR03017		444	EpsF chain length determinant protein EpsF. Sequen	86.66
TIGR03420		226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	86.54
PRK06526		254	transposase; Provisional	86.53
PRK08116		268	hypothetical protein; Validated	86.42
PRK08084		235	DNA replication initiation factor; Provisional	86.36
cd00009		151	AAA The AAA+ (ATPases Associated with a wide varie	86.28
PF15066		527	CAGE1: Cancer-associated gene protein 1 family	86.16
PF00437		270	T2SE: Type II/IV secretion system protein; InterPr	86.04
PF05622		713	HOOK: HOOK protein; InterPro: IPR008636 This famil	85.92
TIGR02928		365	orc1/cdc6 family replication initiation protein. M	85.82
PF05557		722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	85.45
PRK07952		244	DNA replication protein DnaC; Validated	85.19
PF09728		309	Taxilin: Myosin-like coiled-coil protein; InterPro	85.18
smart00787		312	Spc7 Spc7 kinetochore protein. This domain is foun	85.05
PRK08727		233	hypothetical protein; Validated	84.94
PF08581		79	Tup_N: Tup N-terminal; InterPro: IPR013890 The N-t	84.58
COG4372		499	Uncharacterized protein conserved in bacteria with	84.5
PRK08903		227	DnaA regulatory inactivator Hda; Validated	84.3
KOG1937		521	consensus Uncharacterized conserved protein [Funct	84.07
TIGR01420		343	pilT_fam pilus retraction protein PilT. This model	83.99
COG5008		375	PilU Tfp pilus assembly protein, ATPase PilU [Cell	83.96
PF04111		314	APG6: Autophagy protein Apg6; InterPro: IPR007243	83.93
KOG0612		1317	consensus Rho-associated, coiled-coil containing p	83.93
PRK10436		462	hypothetical protein; Provisional	83.86
PF13245		76	AAA_19: Part of AAA domain	83.75
TIGR02533		486	type_II_gspE general secretory pathway protein E.	83.58
TIGR02538		564	type_IV_pilB type IV-A pilus assembly ATPase PilB.	83.41
PRK08181		269	transposase; Validated	82.98
cd00046		144	DEXDc DEAD-like helicases superfamily. A diverse f	82.89
KOG0999		772	consensus Microtubule-associated protein Bicaudal-	82.81
KOG0995		581	consensus Centromere-associated protein HEC1 [Cell	82.67
PF05701		522	WEMBL: Weak chloroplast movement under blue light;	82.52
PF10186		302	Atg14: UV radiation resistance protein and autopha	82.51
PRK04778		569	septation ring formation regulator EzrA; Provision	82.49
TIGR01005		754	eps_transp_fam exopolysaccharide transport protein	82.4
PF12718		143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	82.35
PF08172		248	CASP_C: CASP C terminal; InterPro: IPR012955 This	82.27
cd01131		198	PilT Pilus retraction ATPase PilT. PilT is a nucle	82.27
KOG0804		493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	82.26
TIGR02525		372	plasmid_TraJ plasmid transfer ATPase TraJ. Members	82.06
PF15294		278	Leu_zip: Leucine zipper	82.04
PF09730		717	BicD: Microtubule-associated protein Bicaudal-D; I	81.76
PF05673		249	DUF815: Protein of unknown function (DUF815); Inte	81.65
KOG0993		542	consensus Rab5 GTPase effector Rabaptin-5 [Intrace	81.51
PF05010		207	TACC: Transforming acidic coiled-coil-containing p	81.47
KOG2129		552	consensus Uncharacterized conserved protein H4 [Fu	81.46
TIGR02524		358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	81.43
TIGR02782		299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	81.36
PF08614		194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	81.27
KOG0018		1141	consensus Structural maintenance of chromosome pro	81.05
PF08317		325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	80.63
PF13401		131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	80.61
PRK12422		445	chromosomal replication initiation protein; Provis	80.59
PF10168		717	Nup88: Nuclear pore component; InterPro: IPR019321	80.55
PF14992		280	TMCO5: TMCO5 family	80.52
smart00382		148	AAA ATPases associated with a variety of cellular	80.32
COG5185		622	HEC1 Protein involved in chromosome segregation, i	80.08
PF04156		191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	80.06

>KOG0244 consensus Kinesin-like protein [Cytoskeleton]	Back alignment and domain information

Probab=100.00  E-value=4.7e-134  Score=1167.93  Aligned_cols=779  Identities=43%  Similarity=0.588  Sum_probs=686.4

Q ss_pred             eCCCCchhhccCCceEEEEeCCCcceeecc-eeEEcceeeCCCCCcchhhhhhhhhhHHHHHhcCCCeEEEeeccCCCCc
Q 002730           16 VRPLIGDERAQGCKECVAVTHGNPQVQIGT-HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGK   94 (887)
Q Consensus        16 vRP~~~~E~~~~~~~~~~~~~~~~~v~~~~-~~F~FD~Vf~~~~s~q~~vy~~~v~plv~~~l~G~N~tv~aYGqTGSGK   94 (887)
                      |||+..+|..+||+.|+.+.|+.|||.+|+ .+|+||+||++ .+.|..+|+.||.|+++.+|.|||+||+|||||||||
T Consensus         1 vRpl~~~e~~~g~~~c~~~~~~~pqv~ig~~~s~t~d~v~~~-~~~Q~~~~e~~V~~l~~~lf~gynatvlaygQtgsgk   79 (913)
T KOG0244|consen    1 VRPLKQMEEEQGCRRCTEVSPRTPQVAIGKDASFTYDKVFLD-LESQKEVYESCVRPLREKLFAGYNATVLAYGQTGSGK   79 (913)
T ss_pred             CCCccchHHHhcchhhcccCCCCCceeecCCcceeeeeeccC-chHHHHHHHHHHHHHHHHHhhhhcceeeeecccCCCc
Confidence            699999999999999999999999999986 79999999986 4569999999999999999999999999999999999


Q ss_pred             ccccCCCCCCCCc-ccchHHHHHHHHHHHHhhcccceEEEEEeeeeeehhhHhhccCCcccccccccCCCCCccccCCCC
Q 002730           95 TYTMGTGLREGFQ-TGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGHAGKVSISGRP  173 (887)
Q Consensus        95 TyTm~g~~~~~~~-~GiIpr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~  173 (887)
                      |||||+++..... .|+|||++.++|..|..... ..|.|.|||+|||++.|+|||.|..                 ...
T Consensus        80 Tytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~-~~f~i~vs~vely~e~v~dl~~~~~-----------------~~~  141 (913)
T KOG0244|consen   80 TYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTES-FVFRITVSFVELYNEEVLDLLKPSR-----------------LKA  141 (913)
T ss_pred             eeecccccccccccCCcCcchHHHHHHHHHhhhc-cceeeeeeeeeccchhhhhhcChhh-----------------hhh
Confidence            9999998764444 59999999999999998654 8899999999999999999998644                 234


Q ss_pred             CceeEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEeeeccccCCCCCCCCCCC
Q 002730          174 PIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSVSPDNGTPDED  253 (887)
Q Consensus       174 ~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSHaIfti~v~q~~~~~~~~~~~~~~~~~  253 (887)
                      ++.+++ +.|++.+.|+++++|.+..+++.+|..|...|++++|+||.+|||||+||||++++......           
T Consensus       142 ~i~~~e-~~g~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~-----------  209 (913)
T KOG0244|consen  142 NIKLRE-PKGEITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSK-----------  209 (913)
T ss_pred             ceeccc-cCCceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhc-----------
Confidence            588888 88999999999999999999999999999999999999999999999999999998765432           


Q ss_pred             CCCceEEeeeeeeecCCCccccccCCCcchhhhhhhhhhhhHHHHHHHHHhhhhccCCCCCCccCCCCcchhhhhhcCCC
Q 002730          254 MDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGG  333 (887)
Q Consensus       254 ~~~~~~~skl~lVDLAGSEr~~~t~~~g~r~kEg~~IN~SL~aLg~VI~aL~~~~~~~~~~~iPyRdSKLTrLLqdsLgG  333 (887)
                        ...+++||||||||||||.++|+++|+|++||++||.||++|||||+||++.++   ++|||||||||||||||+|||
T Consensus       210 --~s~~~sKlhlVDLAGSER~kkT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk---~~~vpyRdSkltrlLQdslgG  284 (913)
T KOG0244|consen  210 --RSSFCSKLHLVDLAGSERVKKTKAEGDRLKEGININGGLLALGNVISALGEAKK---GGEVPYRDSKLTRLLQDSLGG  284 (913)
T ss_pred             --cchhhhhhheeeccccccccccccchhhhhhccCcchHHHHHHHHHHHHHhhhc---CCcccchHHHHHHHHHHHhcC
Confidence              346789999999999999999999999999999999999999999999999875   679999999999999999999


Q ss_pred             CceeeEEEecCCCCCCHHHHHHHHHHHHHhcccccccccccccchHHHHHHHHHHHHHHHHHhhhhCCCChHHHHHHHHH
Q 002730          334 NSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGR  413 (887)
Q Consensus       334 ns~t~mI~~vsP~~~~~~ETl~TL~fa~rar~Ikn~p~vn~d~~~~~i~~l~~~i~~L~~el~~~~~~~~~~~~~~l~~~  413 (887)
                      |+.|+||+||||++.|+.||+|||+||+||++|+|+|+||.||....|..|+.+|+.|+.+|+...|.....+++.+..+
T Consensus       285 ns~tlmiaCiSpadsn~~EtlnTl~ya~Rak~iknk~vvN~d~~~~~~~~lK~ql~~l~~ell~~~~~~~~~ei~sl~~e  364 (913)
T KOG0244|consen  285 NSDTLMIACISPADSNAQETLNTLRYADRAKQIKNKPVVNQDPKSFEMLKLKAQLEPLQVELLSKAGDELDAEINSLPFE  364 (913)
T ss_pred             CcceeeeeecChhhhhhhhHHHHHHHhhHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHhhccccchhHHhhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999976665567899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHhcccccccC-Cchhhchhhh-------------------hhhhcccCCcchhhh
Q 002730          414 IAWLEATNEDLCQELHEYRSRRAVVEHCGTDAQEG-PVSFVKSDGL-------------------KRGFQSIDSSDYQMD  473 (887)
Q Consensus       414 ~~~l~~~~~~l~~~l~~~~~~~~~l~~~~~~aq~~-~~~~~Ki~el-------------------k~~L~~~~~~~~~~~  473 (887)
                      +..+++.+..+..+..+.++.|.....+...++.. +.....+...                   ..-++.+++..+.+.
T Consensus       365 ~~~l~~~~d~~~~e~~e~~s~~s~~~~~~~~~~~~k~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~v~~~~~e~~  444 (913)
T KOG0244|consen  365 NVTLEETLDALLQEKGEERSTLSSKSLKLTGAEKEKDKLRRRTDSCMNLLSEDSNEDASDKSASLPKPLEPVDSGTEEIG  444 (913)
T ss_pred             hhhhhhhHHHHhcchhhhhhhhhHHHHhcchhhhhHHHHHHHHHHHHHHHHHhHhHHhhhccccCCcccccccccccccc
Confidence            99999999999999999999987776666655433 1111111111                   111111111101111


Q ss_pred             hhcc-CCCChhHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcC--cchHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730          474 EAVS-DGNSSEIEEVAKEWEHALWQNTMDKELNELNKRLEQKESEMKLFGD--IDTEALRHHFGKKIMELEEEKRIVQQE  550 (887)
Q Consensus       474 ~~~~-~~~~~~~~~~~~e~e~~~~q~~l~~EL~eLnk~Le~KE~~~~~~~~--~~~~~lk~~ye~kl~eLe~ei~~lq~E  550 (887)
                      ...+ .+++.........++|+..|..+..|+.+++++|++||++++++..  .....+++||+.+...|+.++..++.|
T Consensus       445 ~~~~~~~~e~~~~~~~~~~~~~~~q~~ls~el~el~k~l~~Ke~l~rr~~~~~~~~~~~~~~~e~~~~~le~e~~~le~E  524 (913)
T KOG0244|consen  445 MNTDTSGDEAAEKELSETIGHPQKQGSLSGELSELEKRLAEKEPLTRRKAYEKAEKSKAKEQYESDSGTLEAEKSPLESE  524 (913)
T ss_pred             ccccCCCchhhhcccccCccchHHHhhhhHHHHHHHhhhccccHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHhcccccc
Confidence            1111 0111122233567889999999999999999999999999999875  456789999999999999999999999


Q ss_pred             HHHHHHHHHHhhccCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730          551 RDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQN  630 (887)
Q Consensus       551 rd~Ll~~l~~~~~~~~~~~~Kl~e~~~~kl~~Le~el~~Lkkk~~~~~~l~k~k~~~e~~~~~L~~Ei~~mK~~kv~L~k  630 (887)
                      ++.|+.++.....    .+.+|.++|++||+.||.++..|++++.+|..|++.+.+.+....+|..||..||.+||+|++
T Consensus       525 ~~~l~~el~~~~~----~~~kl~eer~qklk~le~q~s~lkk~l~~~~~l~~~~~~~~~~~~kl~~ei~~~k~~kv~l~~  600 (913)
T KOG0244|consen  525 RSRLRNELNVFNR----LAAKLGEERVQKLKSLETQISLLKKKLSSQRKLIKPKPKSEGIRAKLLQEIHIAKGQKVQLLR  600 (913)
T ss_pred             cHHHHHHHHhhhH----HHHHhhhHHHHHHHHHHHHHHHHHHhhHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998753    788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcccCC
Q 002730          631 KIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSA-RENSVN  709 (887)
Q Consensus       631 kmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~l~~~~~~q~~vLkrK~eE~~a~~krlk~~l~~~k~~~-r~~~~~  709 (887)
                      +|++|+++|+.|++..+||++||++++|++++++.+++..+.+|..||+|||+||++++|||++++..|+..+ .+....
T Consensus       601 ~~~~d~ekfr~~K~~~~Ke~~qlk~~~rk~~~~~~~~~~l~~~q~~vl~~kt~eas~~~krlk~a~~~r~~~~s~~~~~~  680 (913)
T KOG0244|consen  601 VMKEDAEKFRQWKDRTEKEWNQLKGQERKSEGEHPKLEVLVKKQNYVLQRKTEEASAANKRLKEALCIRALTSSGQVTLG  680 (913)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHhccchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998652 222111


Q ss_pred             CCCCCCCCCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCCCcccccccC
Q 002730          710 STGYTTPTGQSNEKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGHSPQRGKNGHSRLSSL  789 (887)
Q Consensus       710 ~~~~~~~~~~~~~~~~~~w~~~e~ei~~~v~e~~~~le~l~~~R~~l~~el~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~  789 (887)
                      .   ++    ........|+.+|++|++.+.+++.+|++++++|+.++.++..++...                      
T Consensus       681 ~---~~----~~~~~~~~~~~~e~ei~~~~~~~~~~l~~~~~~ra~~~~d~~~~r~~~----------------------  731 (913)
T KOG0244|consen  681 D---NG----ASTSRTVAWPSNEIEINQIALNPRGTLLYAAEERAVRMWDLKRLRSEG----------------------  731 (913)
T ss_pred             h---cC----chhHHHHHHhccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH----------------------
Confidence            1   22    344678999999999999999999999999999999999999998631                      


Q ss_pred             ChHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHHHHHHhhhhcccccc
Q 002730          790 SPNARMERIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRYTHNLEDLNY  869 (887)
Q Consensus       790 ~~~~r~~qi~~le~~l~~~~~~~~~~~~~l~eae~~~~~~~~~~~~~~i~s~~eAk~~l~~l~~~~~~~r~~~~~~~~~~  869 (887)
                           .+.|.+|+.+|+..+++|.+|++++..++++++..   .+|++|.|+.||||+++|+|+.++..|++....+..+
T Consensus       732 -----~k~l~~L~~~~~~~~~~i~s~~~~i~~a~~d~~~~---~~w~~v~t~~~ak~~~~~~~~~~~~~r~~~~~~~~~~  803 (913)
T KOG0244|consen  732 -----KKLLGSLEPVMELTSDQISSMQDLIITASKDERIK---MRWEAVGTLSEAKNFEPYLYDGIVALRIQGDNLFSGS  803 (913)
T ss_pred             -----HHHHhhhHHHHHHHHHHHHhHHhhhcccccchhHH---HHHhcccccccchhhhHHHHHHHHHHHHHHHHHhhhh
Confidence                 68899999999999999999999999999998753   4999999999999999999999999999999544444


Q ss_pred             hh
Q 002730          870 RT  871 (887)
Q Consensus       870 ~~  871 (887)
                      |+
T Consensus       804 re  805 (913)
T KOG0244|consen  804 RE  805 (913)
T ss_pred             hh
Confidence            43

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]	Back alignment and domain information

>KOG0245 consensus Kinesin-like protein [Cytoskeleton]	Back alignment and domain information

>KOG4280 consensus Kinesin-like protein [Cytoskeleton]	Back alignment and domain information

>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]	Back alignment and domain information

>PLN03188 kinesin-12 family protein; Provisional	Back alignment and domain information

>KOG0242 consensus Kinesin-like protein [Cytoskeleton]	Back alignment and domain information

>KOG0241 consensus Kinesin-like protein [Cytoskeleton]	Back alignment and domain information

>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup	Back alignment and domain information

>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup	Back alignment and domain information

>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup	Back alignment and domain information

>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins	Back alignment and domain information

>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division	Back alignment and domain information

>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily	Back alignment and domain information

>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins	Back alignment and domain information

>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup	Back alignment and domain information

>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group	Back alignment and domain information

>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup	Back alignment and domain information

>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis	Back alignment and domain information

>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling	Back alignment and domain information

>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins	Back alignment and domain information

>smart00129 KISc Kinesin motor, catalytic domain	Back alignment and domain information

>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	Back alignment and domain information

>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport	Back alignment and domain information

>KOG0246 consensus Kinesin-like protein [Cytoskeleton]	Back alignment and domain information

>cd00106 KISc Kinesin motor domain	Back alignment and domain information

>KOG0247 consensus Kinesin-like protein [Cytoskeleton]	Back alignment and domain information

>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]	Back alignment and domain information

>cd01363 Motor_domain Myosin and Kinesin motor domain	Back alignment and domain information

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]	Back alignment and domain information

>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]	Back alignment and domain information

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]	Back alignment and domain information

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins	Back alignment and domain information

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)	Back alignment and domain information

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PRK11637 AmiB activator; Provisional	Back alignment and domain information

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope	Back alignment and domain information

>PRK02224 chromosome segregation protein; Provisional	Back alignment and domain information

>PRK11637 AmiB activator; Provisional	Back alignment and domain information

>PRK03918 chromosome segregation protein; Provisional	Back alignment and domain information

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]	Back alignment and domain information

>PRK02224 chromosome segregation protein; Provisional	Back alignment and domain information

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes	Back alignment and domain information

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]	Back alignment and domain information

>TIGR00606 rad50 rad50	Back alignment and domain information

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]	Back alignment and domain information

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []	Back alignment and domain information

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)	Back alignment and domain information

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]	Back alignment and domain information

>TIGR00606 rad50 rad50	Back alignment and domain information

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes	Back alignment and domain information

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function	Back alignment and domain information

>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]	Back alignment and domain information

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PRK03918 chromosome segregation protein; Provisional	Back alignment and domain information

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]	Back alignment and domain information

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]	Back alignment and domain information

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins	Back alignment and domain information

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []	Back alignment and domain information

>PHA02562 46 endonuclease subunit; Provisional	Back alignment and domain information

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain	Back alignment and domain information

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]	Back alignment and domain information

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]	Back alignment and domain information

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]	Back alignment and domain information

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]	Back alignment and domain information

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]	Back alignment and domain information

>PRK04863 mukB cell division protein MukB; Provisional	Back alignment and domain information

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PHA02562 46 endonuclease subunit; Provisional	Back alignment and domain information

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function	Back alignment and domain information

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	Back alignment and domain information

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]	Back alignment and domain information

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK01156 chromosome segregation protein; Provisional	Back alignment and domain information

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]	Back alignment and domain information

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]	Back alignment and domain information

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]	Back alignment and domain information

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]	Back alignment and domain information

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication	Back alignment and domain information

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]	Back alignment and domain information

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]	Back alignment and domain information

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	Back alignment and domain information

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]	Back alignment and domain information

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure	Back alignment and domain information

>PRK06893 DNA replication initiation factor; Validated	Back alignment and domain information

>PF14988 DUF4515: Domain of unknown function (DUF4515)	Back alignment and domain information

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules	Back alignment and domain information

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5	Back alignment and domain information

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues	Back alignment and domain information

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain	Back alignment and domain information

>PRK09039 hypothetical protein; Validated	Back alignment and domain information

>PRK11281 hypothetical protein; Provisional	Back alignment and domain information

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []	Back alignment and domain information

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope	Back alignment and domain information

>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]	Back alignment and domain information

>PRK06620 hypothetical protein; Validated	Back alignment and domain information

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily	Back alignment and domain information

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []	Back alignment and domain information

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]	Back alignment and domain information

>PRK09039 hypothetical protein; Validated	Back alignment and domain information

>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]	Back alignment and domain information

>PRK14086 dnaA chromosomal replication initiation protein; Provisional	Back alignment and domain information

>PRK09087 hypothetical protein; Validated	Back alignment and domain information

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure	Back alignment and domain information

>PRK01156 chromosome segregation protein; Provisional	Back alignment and domain information

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family	Back alignment and domain information

>PRK14088 dnaA chromosomal replication initiation protein; Provisional	Back alignment and domain information

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []	Back alignment and domain information

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]	Back alignment and domain information

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]	Back alignment and domain information

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]	Back alignment and domain information

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK05642 DNA replication initiation factor; Validated	Back alignment and domain information

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]	Back alignment and domain information

>PF13851 GAS: Growth-arrest specific micro-tubule binding	Back alignment and domain information

>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3	Back alignment and domain information

>PRK04778 septation ring formation regulator EzrA; Provisional	Back alignment and domain information

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]	Back alignment and domain information

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed	Back alignment and domain information

>PF15254 CCDC14: Coiled-coil domain-containing protein 14	Back alignment and domain information

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril	Back alignment and domain information

>TIGR00362 DnaA chromosomal replication initiator protein DnaA	Back alignment and domain information

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function	Back alignment and domain information

>PRK12377 putative replication protein; Provisional	Back alignment and domain information

>PF14988 DUF4515: Domain of unknown function (DUF4515)	Back alignment and domain information

>PRK00411 cdc6 cell division control protein 6; Reviewed	Back alignment and domain information

>TIGR00631 uvrb excinuclease ABC, B subunit	Back alignment and domain information

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK14087 dnaA chromosomal replication initiation protein; Provisional	Back alignment and domain information

>TIGR03017 EpsF chain length determinant protein EpsF	Back alignment and domain information

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda	Back alignment and domain information

>PRK06526 transposase; Provisional	Back alignment and domain information

>PRK08116 hypothetical protein; Validated	Back alignment and domain information

>PRK08084 DNA replication initiation factor; Provisional	Back alignment and domain information

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold	Back alignment and domain information

>PF15066 CAGE1: Cancer-associated gene protein 1 family	Back alignment and domain information

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]	Back alignment and domain information

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms	Back alignment and domain information

>TIGR02928 orc1/cdc6 family replication initiation protein	Back alignment and domain information

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins	Back alignment and domain information

>PRK07952 DNA replication protein DnaC; Validated	Back alignment and domain information

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed	Back alignment and domain information

>smart00787 Spc7 Spc7 kinetochore protein	Back alignment and domain information

>PRK08727 hypothetical protein; Validated	Back alignment and domain information

>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []	Back alignment and domain information

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]	Back alignment and domain information

>PRK08903 DnaA regulatory inactivator Hda; Validated	Back alignment and domain information

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>TIGR01420 pilT_fam pilus retraction protein PilT	Back alignment and domain information

>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]	Back alignment and domain information

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells	Back alignment and domain information

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>PRK10436 hypothetical protein; Provisional	Back alignment and domain information

>PF13245 AAA_19: Part of AAA domain	Back alignment and domain information

>TIGR02533 type_II_gspE general secretory pathway protein E	Back alignment and domain information

>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB	Back alignment and domain information

>PRK08181 transposase; Validated	Back alignment and domain information

>cd00046 DEXDc DEAD-like helicases superfamily	Back alignment and domain information

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function	Back alignment and domain information

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking	Back alignment and domain information

>PRK04778 septation ring formation regulator EzrA; Provisional	Back alignment and domain information

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family	Back alignment and domain information

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins	Back alignment and domain information

>cd01131 PilT Pilus retraction ATPase PilT	Back alignment and domain information

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]	Back alignment and domain information

>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ	Back alignment and domain information

>PF15294 Leu_zip: Leucine zipper	Back alignment and domain information

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []	Back alignment and domain information

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function	Back alignment and domain information

>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules	Back alignment and domain information

>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]	Back alignment and domain information

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB	Back alignment and domain information

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB	Back alignment and domain information

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells	Back alignment and domain information

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []	Back alignment and domain information

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B	Back alignment and domain information

>PRK12422 chromosomal replication initiation protein; Provisional	Back alignment and domain information

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs	Back alignment and domain information

>PF14992 TMCO5: TMCO5 family	Back alignment and domain information

>smart00382 AAA ATPases associated with a variety of cellular activities	Back alignment and domain information

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]	Back alignment and domain information

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion	Back alignment and domain information

Homologous Structure Templates