Citrus Sinensis ID: 002731
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 887 | 2.2.26 [Sep-21-2011] | |||||||
| Q9ULD4 | 1205 | Bromodomain and PHD finge | yes | no | 0.172 | 0.126 | 0.358 | 2e-19 | |
| O95696 | 1058 | Bromodomain-containing pr | no | no | 0.092 | 0.077 | 0.487 | 3e-16 | |
| Q3UQU0 | 596 | Bromodomain-containing pr | no | no | 0.101 | 0.151 | 0.444 | 7e-16 | |
| Q6NVM8 | 596 | Bromodomain-containing pr | no | no | 0.103 | 0.154 | 0.434 | 8e-16 | |
| Q6GLP7 | 527 | Bromodomain-containing pr | N/A | no | 0.103 | 0.174 | 0.434 | 1e-15 | |
| Q9H8M2 | 597 | Bromodomain-containing pr | no | no | 0.101 | 0.150 | 0.444 | 1e-15 | |
| Q7ZUF2 | 631 | Bromodomain-containing pr | no | no | 0.119 | 0.167 | 0.386 | 2e-15 | |
| Q5ZKG2 | 651 | Bromodomain-containing pr | no | no | 0.119 | 0.162 | 0.351 | 3e-15 | |
| O88665 | 651 | Bromodomain-containing pr | no | no | 0.119 | 0.162 | 0.324 | 1e-13 | |
| Q5R8B0 | 651 | Bromodomain-containing pr | no | no | 0.119 | 0.162 | 0.324 | 1e-13 |
| >sp|Q9ULD4|BRPF3_HUMAN Bromodomain and PHD finger-containing protein 3 OS=Homo sapiens GN=BRPF3 PE=1 SV=2 | Back alignment and function desciption |
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Score = 98.2 bits (243), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 88/156 (56%), Gaps = 3/156 (1%)
Query: 165 MPDKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSL 224
MP L LD LQ+KD ++AEPV+ E+PDY + I PMDF+T+R+KL + Y +L
Sbjct: 592 MPFNVLLRTTLDLLQEKDPAHIFAEPVNLSEVPDYLEFISKPMDFSTMRRKLESHLYRTL 651
Query: 225 DQFESDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRAGIERSEKELKPEKELN 284
++FE D LI TN M+YNA DT++H+ A +++L R E + PE+ +
Sbjct: 652 EEFEEDFNLIVTNCMKYNAKDTIFHRAAVRLRDLGGAILRHARRQAENIGYD--PERGTH 709
Query: 285 LEKELRLEKDLKSEPKTKSSILVKKQTKKHFSRTIQ 320
L + +LE + + +IL+ + + H S +Q
Sbjct: 710 LPESPKLEDFYRFSWEDVDNILI-PENRAHLSPEVQ 744
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Component of the MOZ/MORF complex which has a histone H3 acetyltransferase activity. Homo sapiens (taxid: 9606) |
| >sp|O95696|BRD1_HUMAN Bromodomain-containing protein 1 OS=Homo sapiens GN=BRD1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q3UQU0|BRD9_MOUSE Bromodomain-containing protein 9 OS=Mus musculus GN=Brd9 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q6NVM8|BRD9_XENTR Bromodomain-containing protein 9 OS=Xenopus tropicalis GN=brd9 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q6GLP7|BRD9_XENLA Bromodomain-containing protein 9 OS=Xenopus laevis GN=brd9 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9H8M2|BRD9_HUMAN Bromodomain-containing protein 9 OS=Homo sapiens GN=BRD9 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q7ZUF2|BRD9_DANRE Bromodomain-containing protein 9 OS=Danio rerio GN=brd9 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q5ZKG2|BRD7_CHICK Bromodomain-containing protein 7 OS=Gallus gallus GN=BRD7 PE=2 SV=1 | Back alignment and function description |
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| >sp|O88665|BRD7_MOUSE Bromodomain-containing protein 7 OS=Mus musculus GN=Brd7 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q5R8B0|BRD7_PONAB Bromodomain-containing protein 7 OS=Pongo abelii GN=BRD7 PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 887 | ||||||
| 359494049 | 898 | PREDICTED: uncharacterized protein LOC10 | 0.979 | 0.967 | 0.610 | 0.0 | |
| 255578078 | 933 | bromodomain-containing protein [Ricinus | 0.994 | 0.945 | 0.593 | 0.0 | |
| 147776966 | 923 | hypothetical protein VITISV_007685 [Viti | 0.968 | 0.930 | 0.579 | 0.0 | |
| 449517595 | 881 | PREDICTED: uncharacterized protein LOC10 | 0.959 | 0.965 | 0.573 | 0.0 | |
| 449444206 | 903 | PREDICTED: uncharacterized protein LOC10 | 0.958 | 0.941 | 0.573 | 0.0 | |
| 356524269 | 793 | PREDICTED: uncharacterized protein LOC10 | 0.807 | 0.902 | 0.573 | 0.0 | |
| 356524267 | 862 | PREDICTED: uncharacterized protein LOC10 | 0.804 | 0.828 | 0.568 | 0.0 | |
| 356569782 | 833 | PREDICTED: uncharacterized protein LOC10 | 0.806 | 0.858 | 0.565 | 0.0 | |
| 357494567 | 959 | Bromodomain-containing protein [Medicago | 0.811 | 0.750 | 0.545 | 0.0 | |
| 356569784 | 857 | PREDICTED: uncharacterized protein LOC10 | 0.939 | 0.971 | 0.531 | 0.0 |
| >gi|359494049|ref|XP_002277977.2| PREDICTED: uncharacterized protein LOC100267501 [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 994 bits (2571), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 559/916 (61%), Positives = 654/916 (71%), Gaps = 47/916 (5%)
Query: 1 MGQIVKRKKKGRPSKADLARRPISPTPATESEVRRSLRRRNVRYDIDYYEDYFDEEDEDE 60
M QIVKRKKKGRPSK+DLARR + E ++RRS RRR+VRY+ID
Sbjct: 1 MVQIVKRKKKGRPSKSDLARRSTAEGAQPERDLRRSHRRRSVRYNID------------Y 48
Query: 61 EEERRREKKLKLVVKLNQRSDSTEPTRSHSRSSARAEHASDDEDEDED----------DK 110
++ + + + + ++ HS S+ + + DE+E +K
Sbjct: 49 DDFVDDDDEDEEDERRREKKLKLVLKLPHSESAGESAPSGTRRDENESGVSASSSEYGNK 108
Query: 111 PLKKRKINGGDFSESDDEEEE-------NNYDEEEGRRRKVQSKGHDSPPGTPNDRQSGI 163
PLKKR+I+G D + D + + N+ + E R RK SKG DS GTP + SGI
Sbjct: 109 PLKKRRIDGEDDDDDGDGDHDDDDDDEVNDCTDLEERGRKADSKGMDSVLGTPAEVSSGI 168
Query: 164 PMPDKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSS 223
P+PDKKSLELILDKLQKKD YGVYAEPVDPEELPDYHDVIE+PMDF TVRKKL NGSY +
Sbjct: 169 PLPDKKSLELILDKLQKKDIYGVYAEPVDPEELPDYHDVIEHPMDFATVRKKLGNGSYRT 228
Query: 224 LDQFESDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRAGIERSEKELKPEKEL 283
++FESDVFLICTNAMQYNAPDT+YHKQARAIQELA+KKF +LR I RSEKELK E+
Sbjct: 229 FEEFESDVFLICTNAMQYNAPDTIYHKQARAIQELARKKFQKLRIDIGRSEKELKSEQ-- 286
Query: 284 NLEKELRLEKDLKSEPKTKSSILVKKQTKKHFSRTIQEPVGSDFSSGATLATTGDIQNGS 343
L+ E R EKDLKSE K +S+ LVKKQ KK RT QEPVGSDFSSGATLAT GD+QNG
Sbjct: 287 -LKPE-RSEKDLKSEQKMRSNPLVKKQIKKPIFRTAQEPVGSDFSSGATLATMGDVQNGF 344
Query: 344 VATQAGGCERPTNTDA-IVDGNSSLADNNLEKVEELSSAKGLLSKLGRKPAVPDENRRAT 402
ATQAGGCERP+N D I++ N S DNNLEK EEL S KGLLSK GRKP V DENRRAT
Sbjct: 345 NATQAGGCERPSNVDGLIIESNPSQIDNNLEKAEELFSGKGLLSKFGRKPFVVDENRRAT 404
Query: 403 YSISTQPVVRSDSIFTTFEGETKHLVAVGLHAEYSYARSLARFAATLGPVAWKVASRRIE 462
YSIS QP+V S++IF TFE E K LVAVGLHA++SYARSLARFAATLGPVAWKVAS+RIE
Sbjct: 405 YSISNQPIVGSETIFNTFEAEAKQLVAVGLHADHSYARSLARFAATLGPVAWKVASQRIE 464
Query: 463 QALPAGCKFGRGWVGEYEPLPTPVLMLETCTQKESALFSKLQSTADVRKDDTAFRIPIPA 522
QALP G KFGRGWVGE+EPLPTPVLMLET QKE L KLQ A +RKD+ + P+PA
Sbjct: 465 QALPVGSKFGRGWVGEFEPLPTPVLMLETRIQKEPFLVPKLQHNAVLRKDEKISKPPVPA 524
Query: 523 KVHPVHRPISEGNSPLFRPANGLTPEGKTPHFSSAGKKPSTPVNAIKQKHNPFSRTSAEP 582
K H V P EG LF PA+ T E K P F SAG K + PVN Q+ NP SR +P
Sbjct: 525 KEHSVSGPTLEGKQSLFCPASAPTTERKQPLFGSAGTKSTPPVNTGNQQQNPLSRNFTQP 584
Query: 583 ENKVSKQVELNLPPSANQSKGDTVAGKQVSVKLETGVSRSTEMVPRNMHLLQSSPSK--- 639
E KV KQVELN PPSA+Q+ D V+ KQ+ E RS E V R+ ++LQS P K
Sbjct: 585 EKKVLKQVELNCPPSASQNHADLVSEKQLLNGSEAATPRSMEAVSRSRNILQSLPFKLPD 644
Query: 640 --------QQNGNVTSNSGNARVISPSSNNVPSQMAGAATFFPHGPEQGRSDSVHLMKTL 691
NG +S ++I +S+ VPSQ+A T+ PHG EQG SD V LM+ L
Sbjct: 645 TNGVVAGGLTNGKPSSRIDGNKMIGSASDTVPSQLARVPTYLPHGAEQGLSDPVQLMRKL 704
Query: 692 NEKAQKQQNSSNQSAINTPPVMPSVPSVRRDDSGNAAAVAARAWMSIGAGGFKPPAENST 751
EKAQKQQ SSN S +++PP MPS+PS R DS NAAA AARAWMSIGAGGFKP AENS
Sbjct: 705 AEKAQKQQKSSNHSPVDSPPAMPSIPS-PRSDSSNAAATAARAWMSIGAGGFKPVAENSI 763
Query: 752 SPKNQISAESLYNPTREFHTQISRARGEFPLSVGMQFQTEKNSFPPQGFMPQPVRAVNEA 811
+PKN ISA+SLYNPTRE H Q++R RGEFP+S GM FQ+EKNSFP Q F+PQPVR + EA
Sbjct: 764 TPKNHISADSLYNPTRELHPQVTRFRGEFPVSGGMHFQSEKNSFPLQAFVPQPVR-IGEA 822
Query: 812 HFQNRPMVFPQLLTNDFARFQMQSPWRGLSPHSQPRPRQEGLPPDLNISFQSPGSPVKQS 871
FQNRP++FPQL+T D +RFQMQSPW+GL+P++QPR RQE LPPDLNI FQ GSPV+QS
Sbjct: 823 QFQNRPVIFPQLVTADLSRFQMQSPWQGLNPNTQPRHRQETLPPDLNIGFQPSGSPVRQS 882
Query: 872 TGVLVDSQQPDLALQL 887
+GVLVDSQQPDLALQL
Sbjct: 883 SGVLVDSQQPDLALQL 898
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255578078|ref|XP_002529909.1| bromodomain-containing protein [Ricinus communis] gi|223530586|gb|EEF32463.1| bromodomain-containing protein [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|147776966|emb|CAN63414.1| hypothetical protein VITISV_007685 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449517595|ref|XP_004165831.1| PREDICTED: uncharacterized protein LOC101229993 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449444206|ref|XP_004139866.1| PREDICTED: uncharacterized protein LOC101204699 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356524269|ref|XP_003530752.1| PREDICTED: uncharacterized protein LOC100799986 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356524267|ref|XP_003530751.1| PREDICTED: uncharacterized protein LOC100799455 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356569782|ref|XP_003553075.1| PREDICTED: uncharacterized protein LOC100792844 [Glycine max] | Back alignment and taxonomy information |
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| >gi|357494567|ref|XP_003617572.1| Bromodomain-containing protein [Medicago truncatula] gi|355518907|gb|AET00531.1| Bromodomain-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|356569784|ref|XP_003553076.1| PREDICTED: uncharacterized protein LOC100793896 [Glycine max] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 887 | ||||||
| TAIR|locus:2151948 | 916 | AT5G55040 "AT5G55040" [Arabido | 0.401 | 0.388 | 0.482 | 3.4e-131 | |
| TAIR|locus:2030422 | 652 | AT1G20670 "AT1G20670" [Arabido | 0.137 | 0.187 | 0.663 | 5.7e-74 | |
| TAIR|locus:2014594 | 580 | AT1G76380 "AT1G76380" [Arabido | 0.117 | 0.179 | 0.701 | 2.1e-66 | |
| UNIPROTKB|E9PSF3 | 821 | BRPF3 "Bromodomain and PHD fin | 0.105 | 0.114 | 0.468 | 2.7e-15 | |
| UNIPROTKB|B7ZLN5 | 871 | BRPF3 "Bromodomain and PHD fin | 0.105 | 0.107 | 0.468 | 2.9e-15 | |
| UNIPROTKB|Q17RB6 | 935 | BRPF3 "BRPF3 protein" [Homo sa | 0.105 | 0.100 | 0.468 | 3.3e-15 | |
| UNIPROTKB|E1C0A5 | 1171 | BRPF3 "Uncharacterized protein | 0.099 | 0.075 | 0.5 | 5.5e-15 | |
| UNIPROTKB|Q6GLP7 | 527 | brd9 "Bromodomain-containing p | 0.119 | 0.201 | 0.396 | 3.9e-14 | |
| UNIPROTKB|Q6NVM8 | 596 | brd9 "Bromodomain-containing p | 0.125 | 0.186 | 0.389 | 3.9e-14 | |
| UNIPROTKB|E2RK73 | 1207 | BRPF3 "Uncharacterized protein | 0.105 | 0.077 | 0.468 | 7.5e-14 |
| TAIR|locus:2151948 AT5G55040 "AT5G55040" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 755 (270.8 bits), Expect = 3.4e-131, Sum P(4) = 3.4e-131
Identities = 181/375 (48%), Positives = 228/375 (60%)
Query: 300 KTKSSILVKKQTKKHFSRTIQEPVGSDFSSGATLATTGDIQNGSVATQAGGCERPTNTDA 359
K K VKKQ ++ FSR E VGSDFSSGA LA+ G QN V+TQ GG E+ + TD
Sbjct: 302 KVKPDSSVKKQVRQPFSRNGLEAVGSDFSSGANLASGGASQNEPVSTQIGGHEKHSYTDV 361
Query: 360 IVDGNSSLADNNLEKVEEXXXXXXXXXXXXRKPAVPDENRRATYSISTQPVVRSDSIFTT 419
+ +GN+SL D+ LEK E+ RK +V +E+RRATY S Q RS+SIFTT
Sbjct: 362 LFEGNTSLVDS-LEKAEDLSSGKGLFGKCGRKLSVVEEDRRATYEDSDQQGDRSESIFTT 420
Query: 420 FEGETKHLVAVGLHAEYSYARSLARFAATLGPVAWKVASRRIEQALPAGCKFGRGWVGEY 479
FE E K VAVGLHAE++Y RSLARFAATLGPVAWK+AS+RIEQALPA KFGRGWVGEY
Sbjct: 421 FESEIKQFVAVGLHAEHAYGRSLARFAATLGPVAWKIASQRIEQALPADFKFGRGWVGEY 480
Query: 480 EPLPTPVLMLETCTQKE----SALFSKLQSTADVRKDDTAFRIPIPAKVHPVHRPISEGN 535
EPLPTPVL+ ETCT KE +++FSK +S A + ++T F+ P+PAK RP+ +GN
Sbjct: 481 EPLPTPVLLFETCTPKEPPKKASVFSKRKSNAATKTNETLFKTPLPAKEQQGSRPVRDGN 540
Query: 536 SPLFRPAN-GLTPEGKTPHF--SSAGKKPSTPVNAIKQKHNPFSRTSAEPENKVSKQVEL 592
PA+ G EG +P F + G S + + NP +P+N++ +QVEL
Sbjct: 541 HAFPFPASIGALSEG-SPSFVATQVGNLKSMSQHEYR---NPSQLDFVKPQNRIPQQVEL 596
Query: 593 NLPPSANQSKGDT--VAGKQVSVKLETGVS-RSTEMVPRNMHLLQSSPSKQQ---NGNVT 646
NLPP A Q+ + V Q K +T S RS+ + RNM S K Q NG
Sbjct: 597 NLPPPAEQTNSGSGCVLENQSFGKSDTVASYRSSSDMMRNMSSTDSEHYKHQMTTNGIFP 656
Query: 647 SNSGNARVISPSSNN 661
N +V SP NN
Sbjct: 657 GGLRNGKV-SPGVNN 670
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| TAIR|locus:2030422 AT1G20670 "AT1G20670" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2014594 AT1G76380 "AT1G76380" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E9PSF3 BRPF3 "Bromodomain and PHD finger-containing protein 3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|B7ZLN5 BRPF3 "Bromodomain and PHD finger-containing protein 3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q17RB6 BRPF3 "BRPF3 protein" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1C0A5 BRPF3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q6GLP7 brd9 "Bromodomain-containing protein 9" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q6NVM8 brd9 "Bromodomain-containing protein 9" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2RK73 BRPF3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 887 | |||
| cd04369 | 99 | cd04369, Bromodomain, Bromodomain | 5e-32 | |
| smart00297 | 107 | smart00297, BROMO, bromo domain | 2e-30 | |
| cd05509 | 101 | cd05509, Bromo_gcn5_like, Bromodomain; Gcn5_like s | 4e-28 | |
| cd05512 | 98 | cd05512, Bromo_brd1_like, Bromodomain; brd1_like s | 1e-26 | |
| cd05513 | 98 | cd05513, Bromo_brd7_like, Bromodomain, brd7_like s | 8e-26 | |
| pfam00439 | 84 | pfam00439, Bromodomain, Bromodomain | 2e-25 | |
| cd05498 | 102 | cd05498, Bromo_Brdt_II_like, Bromodomain, Brdt_lik | 5e-24 | |
| cd05506 | 99 | cd05506, Bromo_plant1, Bromodomain, uncharacterize | 7e-23 | |
| cd05511 | 112 | cd05511, Bromo_TFIID, Bromodomain, TFIID-like subf | 2e-21 | |
| cd05499 | 102 | cd05499, Bromo_BDF1_2_II, Bromodomain | 6e-20 | |
| cd05528 | 112 | cd05528, Bromo_AAA, Bromodomain; sub-family co-occ | 1e-18 | |
| cd05500 | 103 | cd05500, Bromo_BDF1_2_I, Bromodomain | 7e-17 | |
| cd05507 | 104 | cd05507, Bromo_brd8_like, Bromodomain, brd8_like s | 9e-17 | |
| cd05503 | 97 | cd05503, Bromo_BAZ2A_B_like, Bromodomain, BAZ2A/BA | 6e-16 | |
| cd05504 | 115 | cd05504, Bromo_Acf1_like, Bromodomain; Acf1_like o | 5e-15 | |
| cd05529 | 128 | cd05529, Bromo_WDR9_I_like, Bromodomain; WDR9 repe | 3e-14 | |
| cd05495 | 108 | cd05495, Bromo_cbp_like, Bromodomain, cbp_like sub | 5e-14 | |
| cd05510 | 112 | cd05510, Bromo_SPT7_like, Bromodomain; SPT7_like s | 6e-14 | |
| cd05505 | 97 | cd05505, Bromo_WSTF_like, Bromodomain; Williams sy | 6e-14 | |
| cd05515 | 105 | cd05515, Bromo_polybromo_V, Bromodomain, polybromo | 6e-14 | |
| cd05502 | 109 | cd05502, Bromo_tif1_like, Bromodomain; tif1_like s | 1e-12 | |
| cd05496 | 119 | cd05496, Bromo_WDR9_II, Bromodomain; WDR9 repeat I | 2e-12 | |
| cd05520 | 103 | cd05520, Bromo_polybromo_III, Bromodomain, polybro | 8e-12 | |
| cd05524 | 113 | cd05524, Bromo_polybromo_I, Bromodomain, polybromo | 4e-11 | |
| cd05508 | 99 | cd05508, Bromo_RACK7, Bromodomain, RACK7_like subf | 4e-11 | |
| cd05516 | 107 | cd05516, Bromo_SNF2L2, Bromodomain, SNF2L2-like su | 5e-11 | |
| cd05522 | 104 | cd05522, Bromo_Rsc1_2_II, Bromodomain, repeat II i | 6e-11 | |
| cd05517 | 103 | cd05517, Bromo_polybromo_II, Bromodomain, polybrom | 1e-10 | |
| cd05497 | 107 | cd05497, Bromo_Brdt_I_like, Bromodomain, Brdt_like | 2e-10 | |
| COG5076 | 371 | COG5076, COG5076, Transcription factor involved in | 4e-10 | |
| cd05521 | 106 | cd05521, Bromo_Rsc1_2_I, Bromodomain, repeat I in | 9e-10 | |
| cd05519 | 103 | cd05519, Bromo_SNF2, Bromodomain, SNF2-like subfam | 2e-08 | |
| cd05518 | 103 | cd05518, Bromo_polybromo_IV, Bromodomain, polybrom | 2e-06 | |
| pfam06246 | 253 | pfam06246, Isy1, Isy1-like splicing family | 5e-04 | |
| cd05492 | 109 | cd05492, Bromo_ZMYND11, Bromodomain; ZMYND11_like | 5e-04 | |
| cd05525 | 106 | cd05525, Bromo_ASH1, Bromodomain; ASH1_like sub-fa | 6e-04 | |
| cd05526 | 110 | cd05526, Bromo_polybromo_VI, Bromodomain, polybrom | 0.001 | |
| pfam03344 | 715 | pfam03344, Daxx, Daxx Family | 0.003 |
| >gnl|CDD|99922 cd04369, Bromodomain, Bromodomain | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 5e-32
Identities = 47/99 (47%), Positives = 68/99 (68%), Gaps = 2/99 (2%)
Query: 167 DKKSLELILDKLQKK--DTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSL 224
KK L +LD L+K D + EPVDP+E PDY++VI+NPMD +T++KKL NG Y SL
Sbjct: 1 LKKKLRSLLDALKKLKRDLSEPFLEPVDPKEAPDYYEVIKNPMDLSTIKKKLKNGEYKSL 60
Query: 225 DQFESDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKF 263
++FE+DV LI +NA YN P + +K A+ +++L +K
Sbjct: 61 EEFEADVRLIFSNAKTYNGPGSPIYKDAKKLEKLFEKLL 99
|
Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine. Length = 99 |
| >gnl|CDD|197636 smart00297, BROMO, bromo domain | Back alignment and domain information |
|---|
| >gnl|CDD|99941 cd05509, Bromo_gcn5_like, Bromodomain; Gcn5_like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|99944 cd05512, Bromo_brd1_like, Bromodomain; brd1_like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|99945 cd05513, Bromo_brd7_like, Bromodomain, brd7_like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|215921 pfam00439, Bromodomain, Bromodomain | Back alignment and domain information |
|---|
| >gnl|CDD|99930 cd05498, Bromo_Brdt_II_like, Bromodomain, Brdt_like subfamily, repeat II | Back alignment and domain information |
|---|
| >gnl|CDD|99938 cd05506, Bromo_plant1, Bromodomain, uncharacterized subfamily specific to plants | Back alignment and domain information |
|---|
| >gnl|CDD|99943 cd05511, Bromo_TFIID, Bromodomain, TFIID-like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|99931 cd05499, Bromo_BDF1_2_II, Bromodomain | Back alignment and domain information |
|---|
| >gnl|CDD|99957 cd05528, Bromo_AAA, Bromodomain; sub-family co-occurring with AAA domains | Back alignment and domain information |
|---|
| >gnl|CDD|99932 cd05500, Bromo_BDF1_2_I, Bromodomain | Back alignment and domain information |
|---|
| >gnl|CDD|99939 cd05507, Bromo_brd8_like, Bromodomain, brd8_like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|99935 cd05503, Bromo_BAZ2A_B_like, Bromodomain, BAZ2A/BAZ2B_like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|99936 cd05504, Bromo_Acf1_like, Bromodomain; Acf1_like or BAZ1A_like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|99958 cd05529, Bromo_WDR9_I_like, Bromodomain; WDR9 repeat I_like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|99927 cd05495, Bromo_cbp_like, Bromodomain, cbp_like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|99942 cd05510, Bromo_SPT7_like, Bromodomain; SPT7_like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|99937 cd05505, Bromo_WSTF_like, Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like) | Back alignment and domain information |
|---|
| >gnl|CDD|99946 cd05515, Bromo_polybromo_V, Bromodomain, polybromo repeat V | Back alignment and domain information |
|---|
| >gnl|CDD|99934 cd05502, Bromo_tif1_like, Bromodomain; tif1_like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|99928 cd05496, Bromo_WDR9_II, Bromodomain; WDR9 repeat II_like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|99951 cd05520, Bromo_polybromo_III, Bromodomain, polybromo repeat III | Back alignment and domain information |
|---|
| >gnl|CDD|99954 cd05524, Bromo_polybromo_I, Bromodomain, polybromo repeat I | Back alignment and domain information |
|---|
| >gnl|CDD|99940 cd05508, Bromo_RACK7, Bromodomain, RACK7_like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|99947 cd05516, Bromo_SNF2L2, Bromodomain, SNF2L2-like subfamily, specific to animals | Back alignment and domain information |
|---|
| >gnl|CDD|99953 cd05522, Bromo_Rsc1_2_II, Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi | Back alignment and domain information |
|---|
| >gnl|CDD|99948 cd05517, Bromo_polybromo_II, Bromodomain, polybromo repeat II | Back alignment and domain information |
|---|
| >gnl|CDD|99929 cd05497, Bromo_Brdt_I_like, Bromodomain, Brdt_like subfamily, repeat I | Back alignment and domain information |
|---|
| >gnl|CDD|227408 COG5076, COG5076, Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] | Back alignment and domain information |
|---|
| >gnl|CDD|99952 cd05521, Bromo_Rsc1_2_I, Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi | Back alignment and domain information |
|---|
| >gnl|CDD|99950 cd05519, Bromo_SNF2, Bromodomain, SNF2-like subfamily, specific to fungi | Back alignment and domain information |
|---|
| >gnl|CDD|99949 cd05518, Bromo_polybromo_IV, Bromodomain, polybromo repeat IV | Back alignment and domain information |
|---|
| >gnl|CDD|218954 pfam06246, Isy1, Isy1-like splicing family | Back alignment and domain information |
|---|
| >gnl|CDD|99924 cd05492, Bromo_ZMYND11, Bromodomain; ZMYND11_like sub-family | Back alignment and domain information |
|---|
| >gnl|CDD|99955 cd05525, Bromo_ASH1, Bromodomain; ASH1_like sub-family | Back alignment and domain information |
|---|
| >gnl|CDD|99956 cd05526, Bromo_polybromo_VI, Bromodomain, polybromo repeat VI | Back alignment and domain information |
|---|
| >gnl|CDD|217503 pfam03344, Daxx, Daxx Family | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 887 | |||
| cd05496 | 119 | Bromo_WDR9_II Bromodomain; WDR9 repeat II_like sub | 99.91 | |
| cd05495 | 108 | Bromo_cbp_like Bromodomain, cbp_like subfamily. Cb | 99.91 | |
| cd05505 | 97 | Bromo_WSTF_like Bromodomain; Williams syndrome tra | 99.91 | |
| cd05497 | 107 | Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily | 99.9 | |
| cd05507 | 104 | Bromo_brd8_like Bromodomain, brd8_like subgroup. I | 99.9 | |
| cd05503 | 97 | Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like s | 99.9 | |
| cd05504 | 115 | Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_li | 99.9 | |
| cd05509 | 101 | Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. | 99.89 | |
| cd05508 | 99 | Bromo_RACK7 Bromodomain, RACK7_like subfamily. RAC | 99.89 | |
| cd05502 | 109 | Bromo_tif1_like Bromodomain; tif1_like subfamily. | 99.89 | |
| cd05511 | 112 | Bromo_TFIID Bromodomain, TFIID-like subfamily. Hum | 99.89 | |
| cd05510 | 112 | Bromo_SPT7_like Bromodomain; SPT7_like subfamily. | 99.89 | |
| cd05513 | 98 | Bromo_brd7_like Bromodomain, brd7_like subgroup. T | 99.89 | |
| cd05516 | 107 | Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, s | 99.89 | |
| cd05512 | 98 | Bromo_brd1_like Bromodomain; brd1_like subfamily. | 99.88 | |
| cd05506 | 99 | Bromo_plant1 Bromodomain, uncharacterized subfamil | 99.88 | |
| cd05499 | 102 | Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfam | 99.88 | |
| cd05500 | 103 | Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfami | 99.88 | |
| cd05498 | 102 | Bromo_Brdt_II_like Bromodomain, Brdt_like subfamil | 99.88 | |
| cd05528 | 112 | Bromo_AAA Bromodomain; sub-family co-occurring wit | 99.87 | |
| cd05519 | 103 | Bromo_SNF2 Bromodomain, SNF2-like subfamily, speci | 99.87 | |
| cd05501 | 102 | Bromo_SP100C_like Bromodomain, SP100C_like subfami | 99.87 | |
| KOG1474 | 640 | consensus Transcription initiation factor TFIID, s | 99.86 | |
| cd05524 | 113 | Bromo_polybromo_I Bromodomain, polybromo repeat I. | 99.86 | |
| cd05515 | 105 | Bromo_polybromo_V Bromodomain, polybromo repeat V. | 99.86 | |
| cd05517 | 103 | Bromo_polybromo_II Bromodomain, polybromo repeat I | 99.85 | |
| cd05518 | 103 | Bromo_polybromo_IV Bromodomain, polybromo repeat I | 99.85 | |
| cd05520 | 103 | Bromo_polybromo_III Bromodomain, polybromo repeat | 99.85 | |
| cd05525 | 106 | Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 | 99.85 | |
| smart00297 | 107 | BROMO bromo domain. | 99.84 | |
| cd05529 | 128 | Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like | 99.84 | |
| cd05521 | 106 | Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_lik | 99.82 | |
| cd05522 | 104 | Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_l | 99.82 | |
| cd04369 | 99 | Bromodomain Bromodomain. Bromodomains are found in | 99.81 | |
| PF00439 | 84 | Bromodomain: Bromodomain; InterPro: IPR001487 Brom | 99.8 | |
| KOG0955 | 1051 | consensus PHD finger protein BR140/LIN-49 [General | 99.77 | |
| cd05492 | 109 | Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family | 99.76 | |
| cd05526 | 110 | Bromo_polybromo_VI Bromodomain, polybromo repeat V | 99.72 | |
| COG5076 | 371 | Transcription factor involved in chromatin remodel | 99.65 | |
| KOG1245 | 1404 | consensus Chromatin remodeling complex WSTF-ISWI, | 99.58 | |
| KOG1472 | 720 | consensus Histone acetyltransferase SAGA/ADA, cata | 99.32 | |
| KOG0386 | 1157 | consensus Chromatin remodeling complex SWI/SNF, co | 99.25 | |
| KOG1827 | 629 | consensus Chromatin remodeling complex RSC, subuni | 98.96 | |
| cd05494 | 114 | Bromodomain_1 Bromodomain; uncharacterized subfami | 98.95 | |
| KOG0008 | 1563 | consensus Transcription initiation factor TFIID, s | 98.87 | |
| KOG0008 | 1563 | consensus Transcription initiation factor TFIID, s | 98.83 | |
| cd05491 | 119 | Bromo_TBP7_like Bromodomain; TBP7_like subfamily, | 98.78 | |
| KOG1472 | 720 | consensus Histone acetyltransferase SAGA/ADA, cata | 98.44 | |
| KOG1828 | 418 | consensus IRF-2-binding protein CELTIX-1, contains | 98.12 | |
| KOG1828 | 418 | consensus IRF-2-binding protein CELTIX-1, contains | 97.96 | |
| KOG1474 | 640 | consensus Transcription initiation factor TFIID, s | 97.83 | |
| COG5076 | 371 | Transcription factor involved in chromatin remodel | 96.55 | |
| cd05493 | 131 | Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL- | 94.21 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 83.13 |
| >cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-24 Score=205.46 Aligned_cols=108 Identities=24% Similarity=0.405 Sum_probs=103.5
Q ss_pred cchHHHHHHHHHHhhccCccCCCcCCCCCCCCcchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcCCC
Q 002731 165 MPDKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAP 244 (887)
Q Consensus 165 ~~~kk~L~~ILd~L~k~~~s~pF~ePVD~~e~PDYYdIIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LIfsNA~~YN~p 244 (887)
..|++.|..||+.|++++.+++|+.|||+..+||||+||++||||+||++||.++.|.++++|..||+|||.||++||++
T Consensus 4 ~~w~~~c~~il~~l~~~~~s~~F~~PVd~~~~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~~yN~~ 83 (119)
T cd05496 4 SDWKKQCKELVNLMWDCEDSEPFRQPVDLLKYPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSYTPN 83 (119)
T ss_pred HHHHHHHHHHHHHHHhCCccccccCCCChhhcCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002731 245 -DTVYHKQARAIQELAKKKFHRLRAGIER 272 (887)
Q Consensus 245 -~S~Iyk~A~~Le~~fek~~~kl~~~i~~ 272 (887)
++.||.+|..|++.|++.+.++...+..
T Consensus 84 ~~s~i~~~a~~L~~~F~~~~~~l~~~~~~ 112 (119)
T cd05496 84 KRSRIYSMTLRLSALFEEHIKKIISDWKS 112 (119)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999877753
|
WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily | Back alignment and domain information |
|---|
| >cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like) | Back alignment and domain information |
|---|
| >cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I | Back alignment and domain information |
|---|
| >cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup | Back alignment and domain information |
|---|
| >cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily | Back alignment and domain information |
|---|
| >cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily | Back alignment and domain information |
|---|
| >cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily | Back alignment and domain information |
|---|
| >cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily | Back alignment and domain information |
|---|
| >cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily | Back alignment and domain information |
|---|
| >cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily | Back alignment and domain information |
|---|
| >cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily | Back alignment and domain information |
|---|
| >cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup | Back alignment and domain information |
|---|
| >cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals | Back alignment and domain information |
|---|
| >cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily | Back alignment and domain information |
|---|
| >cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants | Back alignment and domain information |
|---|
| >cd05499 Bromo_BDF1_2_II Bromodomain | Back alignment and domain information |
|---|
| >cd05500 Bromo_BDF1_2_I Bromodomain | Back alignment and domain information |
|---|
| >cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II | Back alignment and domain information |
|---|
| >cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains | Back alignment and domain information |
|---|
| >cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi | Back alignment and domain information |
|---|
| >cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily | Back alignment and domain information |
|---|
| >KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription] | Back alignment and domain information |
|---|
| >cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I | Back alignment and domain information |
|---|
| >cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V | Back alignment and domain information |
|---|
| >cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II | Back alignment and domain information |
|---|
| >cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV | Back alignment and domain information |
|---|
| >cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III | Back alignment and domain information |
|---|
| >cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family | Back alignment and domain information |
|---|
| >smart00297 BROMO bromo domain | Back alignment and domain information |
|---|
| >cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily | Back alignment and domain information |
|---|
| >cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi | Back alignment and domain information |
|---|
| >cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi | Back alignment and domain information |
|---|
| >cd04369 Bromodomain Bromodomain | Back alignment and domain information |
|---|
| >PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins [] | Back alignment and domain information |
|---|
| >KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] | Back alignment and domain information |
|---|
| >cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family | Back alignment and domain information |
|---|
| >cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI | Back alignment and domain information |
|---|
| >COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] | Back alignment and domain information |
|---|
| >KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily | Back alignment and domain information |
|---|
| >KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription] | Back alignment and domain information |
|---|
| >KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription] | Back alignment and domain information |
|---|
| >cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi | Back alignment and domain information |
|---|
| >KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription] | Back alignment and domain information |
|---|
| >KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription] | Back alignment and domain information |
|---|
| >KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription] | Back alignment and domain information |
|---|
| >COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] | Back alignment and domain information |
|---|
| >cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins | Back alignment and domain information |
|---|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 887 | ||||
| 3rcw_A | 135 | Crystal Structure Of The Bromodomain Of Human Brd1 | 3e-16 | ||
| 3hme_A | 123 | Crystal Structure Of Human Bromodomain Containing 9 | 4e-16 | ||
| 2d9e_A | 121 | Solution Structure Of The Bromodomain Of Peregrin L | 6e-16 | ||
| 2i7k_A | 117 | Solution Structure Of The Bromodomain Of Human Brd7 | 1e-13 | ||
| 3uv4_A | 158 | Crystal Structure Of The Second Bromodomain Of Huma | 3e-11 | ||
| 1e6i_A | 121 | Bromodomain From Gcn5 Complexed With Acetylated H4 | 6e-11 | ||
| 2e7n_A | 117 | Solution Structure Of The Second Bromodomain From H | 9e-11 | ||
| 3aad_A | 292 | Structure Of The Histone Chaperone Cia/asf1-double | 1e-10 | ||
| 3uv5_A | 265 | Crystal Structure Of The Tandem Bromodomains Of Hum | 1e-10 | ||
| 1eqf_A | 280 | Crystal Structure Of The Double Bromodomain Module | 1e-10 | ||
| 2oo1_A | 113 | Crystal Structure Of The Bromo Domain 2 Of Human Br | 1e-10 | ||
| 2g4a_A | 116 | Solution Structure Of A Bromodomain From Ring3 Prot | 3e-10 | ||
| 3qzv_A | 174 | Crystal Structure Of Bptf Phd-Linker-Bromo In Compl | 4e-10 | ||
| 2ri7_A | 174 | Crystal Structure Of Phd Finger-Linker-Bromodomain | 5e-10 | ||
| 2dvv_A | 112 | Crystal Structure Of The Second Bromodomain Of The | 6e-10 | ||
| 3oni_A | 114 | Crystal Structure Of The Second Bromodomain Of Huma | 7e-10 | ||
| 3hmh_A | 155 | Crystal Structure Of The Second Bromodomain Of Huma | 8e-10 | ||
| 3qzs_A | 115 | Crystal Structure Of Bptf Bromo In Complex With His | 1e-09 | ||
| 3dai_A | 130 | Crystal Structure Of The Bromodomain Of The Human A | 2e-09 | ||
| 3lxj_A | 136 | Crystal Structure Of The Bromodomain Of Human Aaa D | 2e-09 | ||
| 1jsp_B | 121 | Nmr Structure Of Cbp Bromodomain In Complex With P5 | 2e-09 | ||
| 3qzt_A | 115 | Crystal Structure Of Bptf Bromo In Complex With His | 2e-09 | ||
| 3uv2_A | 126 | Crystal Structure Of The Bromodomain Of Human Nucle | 5e-09 | ||
| 2i8n_A | 114 | Solution Structure Of The Second Bromodomain Of Brd | 5e-09 | ||
| 3i3j_A | 124 | Crystal Structure Of The Bromodomain Of Human Ep300 | 6e-09 | ||
| 3dwy_A | 119 | Crystal Structure Of The Bromodomain Of Human Crebb | 9e-09 | ||
| 2f6j_A | 174 | Crystal Structure Of Phd Finger-Linker-Bromodomain | 9e-09 | ||
| 3jvl_A | 120 | Crystal Structure Of Bromodomain 2 Of Mouse Brd4 Le | 1e-08 | ||
| 2grc_A | 129 | 1.5 A Structure Of Bromodomain From Human Brg1 Prot | 2e-08 | ||
| 3uvd_A | 124 | Crystal Structure Of The Bromodomain Of Human Trans | 2e-08 | ||
| 2e7o_A | 112 | Solution Structure Of The Bromodomain From Human Br | 2e-08 | ||
| 3g0l_A | 117 | Crystal Structure Of Human Bromodomain Adjacent To | 4e-08 | ||
| 3gg3_A | 119 | Crystal Structure Of The Bromodomain Of Human Pcaf | 5e-08 | ||
| 1n72_A | 118 | Structure And Ligand Of A Histone Acetyltransferase | 5e-08 | ||
| 2wp1_A | 126 | Structure Of Brdt Bromodomain 2 Bound To An Acetyla | 5e-08 | ||
| 2dat_A | 123 | Solution Structure Of The Bromodomain Of Human SwiS | 6e-08 | ||
| 3q2e_A | 123 | Crystal Structure Of The Second Bromodomain Of Huma | 6e-08 | ||
| 2lsp_B | 128 | Solution Structures Of Brd4 Second Bromodomain With | 7e-08 | ||
| 2ouo_A | 130 | Crystal Structure Of The Bromo Domain 2 In Human Br | 7e-08 | ||
| 3mb3_A | 135 | Crystal Structure Of The Second Bromodomain Of Plec | 1e-07 | ||
| 2r10_A | 361 | Structure Of An Acetylated Rsc4 Tandem Bromodomain | 3e-07 | ||
| 3nxb_A | 116 | Crystal Structure Of The Bromodomain Of Human Cecr2 | 3e-07 | ||
| 3o33_A | 184 | Crystal Structure Of Trim24 Phd-Bromo In The Free S | 4e-07 | ||
| 2r0v_A | 346 | Structure Of The Rsc4 Tandem Bromodomain Acetylated | 4e-07 | ||
| 2dww_A | 114 | Crystal Structure Of Bromodomain-Containing Protein | 5e-07 | ||
| 3k2j_A | 130 | Crystal Structure Of The 3rd Bromodomain Of Human P | 5e-07 | ||
| 3d7c_A | 112 | Crystal Structure Of The Bromodomain Of Human Gcn5, | 5e-07 | ||
| 1f68_A | 103 | Nmr Solution Structure Of The Bromodomain From Huma | 6e-07 | ||
| 2h60_A | 128 | Solution Structure Of Human Brg1 Bromodomain Length | 6e-07 | ||
| 3hmf_A | 116 | Crystal Structure Of The Second Bromodomain Of Huma | 1e-06 | ||
| 3ljw_A | 120 | Crystal Structure Of The Second Bromodomain Of Huma | 1e-06 | ||
| 2ktb_B | 121 | Solution Structure Of The Second Bromodomain Of Hum | 1e-06 | ||
| 3fkm_X | 166 | Plasmodium Falciparum Bromodomain-Containing Protei | 1e-06 | ||
| 2rfj_A | 119 | Crystal Structure Of The Bromo Domain 1 In Human Br | 1e-06 | ||
| 2yyn_A | 135 | Crystal Sturcture Of Human Bromodomain Protein Leng | 2e-06 | ||
| 2l5e_A | 128 | Complex Between Bd1 Of Brd3 And Gata-1 C-Tail Lengt | 3e-06 | ||
| 2nxb_A | 123 | Crystal Structure Of Human Bromodomain Containing P | 3e-06 | ||
| 2r0s_A | 285 | Crystal Structure Of The Rsc4 Tandem Bromodomain Le | 4e-06 | ||
| 4a9e_A | 154 | N-Terminal Bromodomain Of Human Brd2 With 3-Methyl- | 5e-06 | ||
| 2yw5_A | 138 | Solution Structure Of The Bromodomain From Human Br | 6e-06 | ||
| 2ydw_A | 153 | Crystal Structure Of The First Bromodomain Of Human | 6e-06 | ||
| 4don_A | 145 | Brd4 Bromodomain 1 Complex With A Fragment 3,4-dihy | 1e-05 | ||
| 2r0y_A | 311 | Structure Of The Rsc4 Tandem Bromodomain In Complex | 1e-05 | ||
| 2dkw_A | 131 | Solution Structure Of The Bromodomain Of Human Prot | 1e-05 | ||
| 2yqd_A | 120 | Solution Structure Of The Fifth Bromodomain From Mo | 1e-05 | ||
| 3jvj_A | 131 | Crystal Structure Of The Bromodomain 1 In Mouse Brd | 2e-05 | ||
| 2oss_A | 127 | Crystal Structure Of The Bromo Domain 1 In Human Br | 2e-05 | ||
| 4hbw_A | 127 | Crystal Structure Of The First Bromodomain Of Human | 2e-05 | ||
| 3g0j_A | 124 | Crystal Structure Of The Fifth Bromodomain Of Human | 2e-05 | ||
| 3u5m_A | 207 | Crystal Structure Of Trim33 Phd-Bromo In The Free S | 3e-05 | ||
| 2wp2_A | 120 | Structure Of Brdt Bromodomain Bd1 Bound To A Diacet | 8e-05 | ||
| 3aqa_A | 128 | Crystal Structure Of The Human Brd2 Bd1 Bromodomain | 4e-04 | ||
| 1x0j_A | 122 | Crystal Structure Analysis Of The N-Terminal Bromod | 7e-04 | ||
| 3iu5_A | 116 | Crystal Structure Of The First Bromodomain Of Human | 8e-04 |
| >pdb|3RCW|A Chain A, Crystal Structure Of The Bromodomain Of Human Brd1 Length = 135 | Back alignment and structure |
|
| >pdb|3HME|A Chain A, Crystal Structure Of Human Bromodomain Containing 9 Isoform 1 (Brd9) Length = 123 | Back alignment and structure |
| >pdb|2D9E|A Chain A, Solution Structure Of The Bromodomain Of Peregrin Length = 121 | Back alignment and structure |
| >pdb|2I7K|A Chain A, Solution Structure Of The Bromodomain Of Human Brd7 Protein Length = 117 | Back alignment and structure |
| >pdb|3UV4|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Transcription Initiation Factor Tfiid Subunit 1 (Taf1) Length = 158 | Back alignment and structure |
| >pdb|1E6I|A Chain A, Bromodomain From Gcn5 Complexed With Acetylated H4 Peptide Length = 121 | Back alignment and structure |
| >pdb|2E7N|A Chain A, Solution Structure Of The Second Bromodomain From Human Bromodomain-Containing Protein 3 Length = 117 | Back alignment and structure |
| >pdb|3AAD|A Chain A, Structure Of The Histone Chaperone Cia/asf1-double Bromodomain Complex Linking Histone Modifications And Site-specific Histone Eviction Length = 292 | Back alignment and structure |
| >pdb|3UV5|A Chain A, Crystal Structure Of The Tandem Bromodomains Of Human Transcription Initiation Factor Tfiid Subunit 1 (Taf1) Length = 265 | Back alignment and structure |
| >pdb|1EQF|A Chain A, Crystal Structure Of The Double Bromodomain Module From Human Tafii250 Length = 280 | Back alignment and structure |
| >pdb|2OO1|A Chain A, Crystal Structure Of The Bromo Domain 2 Of Human Bromodomain Containing Protein 3 (Brd3) Length = 113 | Back alignment and structure |
| >pdb|2G4A|A Chain A, Solution Structure Of A Bromodomain From Ring3 Protein Length = 116 | Back alignment and structure |
| >pdb|3QZV|A Chain A, Crystal Structure Of Bptf Phd-Linker-Bromo In Complex With Histone H4k12ac Peptide Length = 174 | Back alignment and structure |
| >pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e Mutant From Human Bptf In The H3(1-9)k4me2 Bound State Length = 174 | Back alignment and structure |
| >pdb|2DVV|A Chain A, Crystal Structure Of The Second Bromodomain Of The Human Brd2 Protein Length = 112 | Back alignment and structure |
| >pdb|3ONI|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd2 In Complex With The Inhibitor Jq1 Length = 114 | Back alignment and structure |
| >pdb|3HMH|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Tbp-Associated Factor Rna Polymerase 1-Like (Taf1l) Length = 155 | Back alignment and structure |
| >pdb|3QZS|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone H4k16ac - Form I Length = 115 | Back alignment and structure |
| >pdb|3DAI|A Chain A, Crystal Structure Of The Bromodomain Of The Human Atad2 Length = 130 | Back alignment and structure |
| >pdb|3LXJ|A Chain A, Crystal Structure Of The Bromodomain Of Human Aaa Domain Containing 2b (Atad2b) Length = 136 | Back alignment and structure |
| >pdb|1JSP|B Chain B, Nmr Structure Of Cbp Bromodomain In Complex With P53 Peptide Length = 121 | Back alignment and structure |
| >pdb|3QZT|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone H4k16ac - Form Ii Length = 115 | Back alignment and structure |
| >pdb|3UV2|A Chain A, Crystal Structure Of The Bromodomain Of Human Nucleosome-Remodeling Factor Subunit Bptf Length = 126 | Back alignment and structure |
| >pdb|2I8N|A Chain A, Solution Structure Of The Second Bromodomain Of Brd4 Length = 114 | Back alignment and structure |
| >pdb|3I3J|A Chain A, Crystal Structure Of The Bromodomain Of Human Ep300 Length = 124 | Back alignment and structure |
| >pdb|3DWY|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp Length = 119 | Back alignment and structure |
| >pdb|2F6J|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State Length = 174 | Back alignment and structure |
| >pdb|3JVL|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4 Length = 120 | Back alignment and structure |
| >pdb|2GRC|A Chain A, 1.5 A Structure Of Bromodomain From Human Brg1 Protein, A Central Atpase Of SwiSNF REMODELING COMPLEX Length = 129 | Back alignment and structure |
| >pdb|3UVD|A Chain A, Crystal Structure Of The Bromodomain Of Human Transcription Activator Brg1 (Smarca4) In Complex With N-Methyl-2-Pyrrolidone Length = 124 | Back alignment and structure |
| >pdb|2E7O|A Chain A, Solution Structure Of The Bromodomain From Human Bromodomain Adjacent To Zinc Finger Domain 2b Length = 112 | Back alignment and structure |
| >pdb|3G0L|A Chain A, Crystal Structure Of Human Bromodomain Adjacent To Zinc Finger Domain 2b (Baz2b) Length = 117 | Back alignment and structure |
| >pdb|3GG3|A Chain A, Crystal Structure Of The Bromodomain Of Human Pcaf Length = 119 | Back alignment and structure |
| >pdb|1N72|A Chain A, Structure And Ligand Of A Histone Acetyltransferase Bromodomain Length = 118 | Back alignment and structure |
| >pdb|2WP1|A Chain A, Structure Of Brdt Bromodomain 2 Bound To An Acetylated Histone H3 Peptide Length = 126 | Back alignment and structure |
| >pdb|2DAT|A Chain A, Solution Structure Of The Bromodomain Of Human SwiSNF Related Matrix Associated Actin Dependent Regulator Of Cromatin Subfamily A Member 2 Length = 123 | Back alignment and structure |
| >pdb|3Q2E|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Bromodomain And Wd Repeat-Containing Protein 1 Isoform A (Wdr9) Length = 123 | Back alignment and structure |
| >pdb|2LSP|B Chain B, Solution Structures Of Brd4 Second Bromodomain With Nf-Kb-K310ac Peptide Length = 128 | Back alignment and structure |
| >pdb|2OUO|A Chain A, Crystal Structure Of The Bromo Domain 2 In Human Bromodomain Containing Protein 4 (Brd4) Length = 130 | Back alignment and structure |
| >pdb|3MB3|A Chain A, Crystal Structure Of The Second Bromodomain Of Pleckstrin Homology Domain Interacting Protein (Phip) Length = 135 | Back alignment and structure |
| >pdb|2R10|A Chain A, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone Chimera Length = 361 | Back alignment and structure |
| >pdb|3NXB|A Chain A, Crystal Structure Of The Bromodomain Of Human Cecr2 Length = 116 | Back alignment and structure |
| >pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State Length = 184 | Back alignment and structure |
| >pdb|2R0V|A Chain A, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25 Length = 346 | Back alignment and structure |
| >pdb|2DWW|A Chain A, Crystal Structure Of Bromodomain-Containing Protein 4 Length = 114 | Back alignment and structure |
| >pdb|3K2J|A Chain A, Crystal Structure Of The 3rd Bromodomain Of Human Poly-Bromodomain Containing Protein 1 (Pb1) Length = 130 | Back alignment and structure |
| >pdb|3D7C|A Chain A, Crystal Structure Of The Bromodomain Of Human Gcn5, The General Control Of Amino-Acid Synthesis Protein 5-Like 2 Length = 112 | Back alignment and structure |
| >pdb|1F68|A Chain A, Nmr Solution Structure Of The Bromodomain From Human Gcn5 Length = 103 | Back alignment and structure |
| >pdb|2H60|A Chain A, Solution Structure Of Human Brg1 Bromodomain Length = 128 | Back alignment and structure |
| >pdb|3HMF|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Poly-Bromodomain Containing Protein 1 (Pb1) Length = 116 | Back alignment and structure |
| >pdb|3LJW|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Polybromo Length = 120 | Back alignment and structure |
| >pdb|2KTB|B Chain B, Solution Structure Of The Second Bromodomain Of Human Polybr Complex With An Acetylated Peptide From Histone 3 Length = 121 | Back alignment and structure |
| >pdb|3FKM|X Chain X, Plasmodium Falciparum Bromodomain-Containing Protein Pf10_0328 Length = 166 | Back alignment and structure |
| >pdb|2RFJ|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human Bromodomain Containing Protein, Testis Specific (Brdt) Length = 119 | Back alignment and structure |
| >pdb|2YYN|A Chain A, Crystal Sturcture Of Human Bromodomain Protein Length = 135 | Back alignment and structure |
| >pdb|2L5E|A Chain A, Complex Between Bd1 Of Brd3 And Gata-1 C-Tail Length = 128 | Back alignment and structure |
| >pdb|2NXB|A Chain A, Crystal Structure Of Human Bromodomain Containing Protein 3 (Brd3) Length = 123 | Back alignment and structure |
| >pdb|2R0S|A Chain A, Crystal Structure Of The Rsc4 Tandem Bromodomain Length = 285 | Back alignment and structure |
| >pdb|4A9E|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One Length = 154 | Back alignment and structure |
| >pdb|2YW5|A Chain A, Solution Structure Of The Bromodomain From Human Bromodomain Containing Protein 3 Length = 138 | Back alignment and structure |
| >pdb|2YDW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2 With The Inhibitor Gw841819x Length = 153 | Back alignment and structure |
| >pdb|4DON|A Chain A, Brd4 Bromodomain 1 Complex With A Fragment 3,4-dihydro-3-methyl-2(1h)- Quinazolinon Length = 145 | Back alignment and structure |
| >pdb|2R0Y|A Chain A, Structure Of The Rsc4 Tandem Bromodomain In Complex With An Acetylated H3 Peptide Length = 311 | Back alignment and structure |
| >pdb|2DKW|A Chain A, Solution Structure Of The Bromodomain Of Human Protein Kiaa1240 Length = 131 | Back alignment and structure |
| >pdb|2YQD|A Chain A, Solution Structure Of The Fifth Bromodomain From Mouse Polybromo-1 Length = 120 | Back alignment and structure |
| >pdb|3JVJ|A Chain A, Crystal Structure Of The Bromodomain 1 In Mouse Brd4 Length = 131 | Back alignment and structure |
| >pdb|2OSS|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human Bromodomain Containing Protein 4 (Brd4) Length = 127 | Back alignment and structure |
| >pdb|4HBW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In Complex With A Quinazoline Ligand Length = 127 | Back alignment and structure |
| >pdb|3G0J|A Chain A, Crystal Structure Of The Fifth Bromodomain Of Human Poly-Bromodomain Containing Protein 1 (Pb1) Length = 124 | Back alignment and structure |
| >pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State Length = 207 | Back alignment and structure |
| >pdb|2WP2|A Chain A, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated Histone H4 Peptide. Length = 120 | Back alignment and structure |
| >pdb|3AQA|A Chain A, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In Complex With A Brd2-Interactive Compound, Bic1 Length = 128 | Back alignment and structure |
| >pdb|1X0J|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain Of Human Brd2 Length = 122 | Back alignment and structure |
| >pdb|3IU5|A Chain A, Crystal Structure Of The First Bromodomain Of Human Poly-Bromodomain Containing Protein 1 (Pb1) Length = 116 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens} Length = 117 | Back alignment and structure |
|---|
Score = 158 bits (401), Expect = 1e-45
Identities = 35/109 (32%), Positives = 64/109 (58%)
Query: 166 PDKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLD 225
P +++L ++ +LQ+KD ++ PV P Y +I++PMDF+T+++K+ N Y S++
Sbjct: 8 PLQEALNQLMRQLQRKDPSAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIE 67
Query: 226 QFESDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRAGIERSE 274
+ + + L+CTNAM YN P+T+Y+K A+ + K + R
Sbjct: 68 ELKDNFKLMCTNAMIYNKPETIYYKAAKKLLHSGMKILSQERLEHHHHH 116
|
| >3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens} Length = 123 | Back alignment and structure |
|---|
| >2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 121 | Back alignment and structure |
|---|
| >3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens} Length = 135 | Back alignment and structure |
|---|
| >1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1 Length = 121 | Back alignment and structure |
|---|
| >3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A Length = 117 | Back alignment and structure |
|---|
| >3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A Length = 130 | Back alignment and structure |
|---|
| >3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A Length = 158 | Back alignment and structure |
|---|
| >3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens} Length = 123 | Back alignment and structure |
|---|
| >2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Length = 174 | Back alignment and structure |
|---|
| >3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A Length = 265 | Back alignment and structure |
|---|
| >3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A Length = 265 | Back alignment and structure |
|---|
| >3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens} Length = 135 | Back alignment and structure |
|---|
| >3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A Length = 119 | Back alignment and structure |
|---|
| >2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A Length = 129 | Back alignment and structure |
|---|
| >3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A Length = 112 | Back alignment and structure |
|---|
| >3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
| >3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
| >3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
| >3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A Length = 124 | Back alignment and structure |
|---|
| >2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A* Length = 130 | Back alignment and structure |
|---|
| >3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A* Length = 120 | Back alignment and structure |
|---|
| >2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 123 | Back alignment and structure |
|---|
| >2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 131 | Back alignment and structure |
|---|
| >3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
| >3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A Length = 120 | Back alignment and structure |
|---|
| >3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7} Length = 166 | Back alignment and structure |
|---|
| >2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ... Length = 127 | Back alignment and structure |
|---|
| >4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A Length = 154 | Back alignment and structure |
|---|
| >3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens} Length = 130 | Back alignment and structure |
|---|
| >3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens} Length = 150 | Back alignment and structure |
|---|
| >3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens} Length = 126 | Back alignment and structure |
|---|
| >2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens} Length = 135 | Back alignment and structure |
|---|
| >2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A Length = 311 | Back alignment and structure |
|---|
| >2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A Length = 311 | Back alignment and structure |
|---|
| >3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
| >2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* Length = 361 | Back alignment and structure |
|---|
| >2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* Length = 361 | Back alignment and structure |
|---|
| >3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Length = 184 | Back alignment and structure |
|---|
| >3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* Length = 207 | Back alignment and structure |
|---|
| >3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Length = 183 | Back alignment and structure |
|---|
| >2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 887 | ||||
| d1eqfa2 | 128 | a.29.2.1 (A:1498-1625) TAFII250 double bromodomain | 2e-30 | |
| d1eqfa1 | 139 | a.29.2.1 (A:1359-1497) TAFII250 double bromodomain | 2e-30 | |
| d3dwya1 | 114 | a.29.2.1 (A:1084-1197) CREB-binding protein, CBP { | 2e-27 | |
| d1e6ia_ | 111 | a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces c | 2e-27 | |
| d3d7ca1 | 102 | a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [T | 1e-26 | |
| d1wuma1 | 118 | a.29.2.1 (A:715-832) P300/CAF histone acetyltransf | 7e-26 |
| >d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: TAFII250 double bromodomain module species: Human (Homo sapiens) [TaxId: 9606]
Score = 113 bits (285), Expect = 2e-30
Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 5/122 (4%)
Query: 166 PDKKSLELILDKLQKKDTYGV-----YAEPVDPEELPDYHDVIENPMDFTTVRKKLANGS 220
D+ + ILD + + V + PV+ + +PDY+ VI NPMD T+RK ++
Sbjct: 5 DDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHK 64
Query: 221 YSSLDQFESDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRAGIERSEKELKPE 280
Y S + F DV LI N+++YN P++ Y K A+ I + + + + EK++
Sbjct: 65 YQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDEHLTQLEKDICTA 124
Query: 281 KE 282
KE
Sbjct: 125 KE 126
|
| >d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Length = 139 | Back information, alignment and structure |
|---|
| >d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]} Length = 114 | Back information, alignment and structure |
|---|
| >d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 111 | Back information, alignment and structure |
|---|
| >d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
| >d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]} Length = 118 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 887 | |||
| d1eqfa1 | 139 | TAFII250 double bromodomain module {Human (Homo sa | 99.94 | |
| d1wuma1 | 118 | P300/CAF histone acetyltransferase bromodomain {Hu | 99.92 | |
| d1e6ia_ | 111 | GCN5 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.92 | |
| d1eqfa2 | 128 | TAFII250 double bromodomain module {Human (Homo sa | 99.92 | |
| d3d7ca1 | 102 | GCN5 {Human (Homo sapiens) [TaxId: 9606]} | 99.92 | |
| d3dwya1 | 114 | CREB-binding protein, CBP {Human (Homo sapiens) [T | 99.91 |
| >d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: TAFII250 double bromodomain module species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=4.8e-26 Score=183.19 Aligned_cols=113 Identities=24% Similarity=0.445 Sum_probs=106.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 02999999999963257667776778989875301011697798999999727999999999999999999752108999
Q 002731 166 PDKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPD 245 (887)
Q Consensus 166 ~~kk~L~~ILd~L~k~d~s~pF~ePVDkke~PDYYeIIK~PMDLsTIkkKLk~g~YkSleeF~~DV~LIfsNA~~YN~~g 245 (887)
.+..+|..||+.|..++.+++|+.|||++.+||||++|++||||.+|++||+++.|.++++|..||.|||.||+.||+++
T Consensus 26 ~l~~~l~~il~~l~~~~~s~pF~~Pvd~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~ 105 (139)
T d1eqfa1 26 TLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPK 105 (139)
T ss_dssp HHHHHHHHHHHHHHTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHCCCCHHHCCCHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999998299765551799934466789880773549999999974890899999999999999999987999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 799999999999999999999987998664108
Q 002731 246 TVYHKQARAIQELAKKKFHRLRAGIERSEKELK 278 (887)
Q Consensus 246 S~IykdA~~Lq~~fek~i~el~~~~~~~e~e~k 278 (887)
|.++.+|..|+..|++.|+++..++...+..+.
T Consensus 106 s~i~~~A~~L~~~~~~~~~~~~~~~~~~e~~in 138 (139)
T d1eqfa1 106 HSLTQISQSMLDLCDEKLKEKEDKLARLEKAIN 138 (139)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999999999999999999999999985149
|
| >d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|