Citrus Sinensis ID: 002745
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 885 | 2.2.26 [Sep-21-2011] | |||||||
| O52177 | 757 | GTP pyrophosphokinase OS= | yes | no | 0.536 | 0.627 | 0.408 | 1e-107 | |
| O54408 | 734 | GTP pyrophosphokinase OS= | yes | no | 0.527 | 0.636 | 0.398 | 2e-99 | |
| P0A0E9 | 736 | GTP pyrophosphokinase OS= | yes | no | 0.536 | 0.645 | 0.383 | 2e-94 | |
| P0A0F0 | 736 | GTP pyrophosphokinase OS= | yes | no | 0.536 | 0.645 | 0.383 | 2e-94 | |
| Q6G8T5 | 736 | GTP pyrophosphokinase OS= | yes | no | 0.536 | 0.645 | 0.383 | 2e-94 | |
| Q99TL8 | 736 | GTP pyrophosphokinase OS= | yes | no | 0.536 | 0.645 | 0.383 | 2e-94 | |
| Q6GG70 | 736 | GTP pyrophosphokinase OS= | yes | no | 0.536 | 0.645 | 0.383 | 2e-94 | |
| Q931Q4 | 736 | GTP pyrophosphokinase OS= | yes | no | 0.536 | 0.645 | 0.383 | 2e-94 | |
| Q54089 | 739 | Bifunctional (p)ppGpp syn | N/A | no | 0.526 | 0.630 | 0.369 | 1e-92 | |
| Q8CS97 | 729 | GTP pyrophosphokinase OS= | yes | no | 0.507 | 0.615 | 0.387 | 2e-91 |
| >sp|O52177|RELA_MYXXA GTP pyrophosphokinase OS=Myxococcus xanthus GN=relA PE=3 SV=1 | Back alignment and function desciption |
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Score = 389 bits (999), Expect = e-107, Method: Compositional matrix adjust.
Identities = 221/541 (40%), Positives = 327/541 (60%), Gaps = 66/541 (12%)
Query: 124 EDSPERLWEDLRPTISYLSPN-ELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARIL 182
+DSPER PT+S P+ +L+++++A + + + H GQ R+SGEP+++HP+EVA IL
Sbjct: 19 DDSPERH----PPTVSQYHPDPDLDIIKKAYVYSAKVHQGQLRKSGEPYLVHPLEVAGIL 74
Query: 183 GELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNEN 242
GEL+LD SI GLLHDT+EDT + T E + E FG+ V +V+G TK+SK + +
Sbjct: 75 GELKLDEASIVTGLLHDTIEDT-LATEEELTELFGSEVAHLVDGVTKLSKF----SASAS 129
Query: 243 HSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAP 302
S ++ +A++ R+M +AM +++RVI+VKLADR HNMRTL HM KQ+ IA ETL ++AP
Sbjct: 130 LSQEEKQAENFRKMIIAMAQDIRVILVKLADRTHNMRTLDHMSEEKQARIAQETLDIYAP 189
Query: 303 LAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQ 362
LA LG+ IK+ELE+LSF Y +++ ++ ++ KE EK +E+ ++ K+ +
Sbjct: 190 LANRLGISWIKTELEDLSFRYVKPQEFFALQAKLNKRKKEREKYIEDTCDLIRSKLAE-- 247
Query: 363 FLDLMTVKTEIRSVCKEPYSIYKAVLKSRG-SINEVNQIAQLRIIIKPKPCSGVGPLCSP 421
+K E+ K YSIYK + KS+G ++++ I RII P
Sbjct: 248 ----RGLKGEVSGRFKHVYSIYKKI-KSQGIDFDQIHDIIAFRIIAPTAPS--------- 293
Query: 422 QQICYHVLGLVHGIWTPIPRAMKDYIATPKPNGYQSLHTTLIPFLYESMFRLEVQIRTEE 481
CY LGLVH +W P+P KD+IA PKPN YQSLHTT+I L E R+EVQIRT E
Sbjct: 294 ---CYEALGLVHEMWKPVPGRFKDFIAIPKPNMYQSLHTTIIGPLSE---RVEVQIRTSE 347
Query: 482 MDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLNNANIALRISWLNAIREWQE 541
M IAE GIAAH+ + GK V + + +WL + EWQ+
Sbjct: 348 MHKIAEEGIAAHW-----------------KYKEGKAVISKDDE---KFAWLRQLMEWQQ 387
Query: 542 EFVGNMTSREFVDTITRDLLGSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAA 601
+ +EF++T+ DL VFVFTP+G++++LP+GAT VD+AY IH+++GN+ V A
Sbjct: 388 DL---KDPKEFLETVKVDLFTDEVFVFTPKGDVRSLPRGATPVDFAYAIHSDVGNRCVGA 444
Query: 602 KVNGNLVSPTHVLANAEVVEIITYNALSSKSAFQRH--KQWLEHAKTRSARHKIMKFLRE 659
KVNG +V + + N + VE++T + Q+H K WL KT A+ +I F+++
Sbjct: 445 KVNGKIVPLRYKMKNGDTVEVLT--------SPQQHPSKDWLTFVKTSRAQQRIRGFIKQ 496
Query: 660 Q 660
Q
Sbjct: 497 Q 497
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In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. This enzyme catalyzes the formation of pppGpp which is then hydrolyzed to form ppGpp. Myxococcus xanthus (taxid: 34) EC: 2EC: .EC: 7EC: .EC: 6EC: .EC: 5 |
| >sp|O54408|RELA_BACSU GTP pyrophosphokinase OS=Bacillus subtilis (strain 168) GN=relA PE=3 SV=3 | Back alignment and function description |
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| >sp|P0A0E9|RELA_STAAW GTP pyrophosphokinase OS=Staphylococcus aureus (strain MW2) GN=relA PE=3 SV=1 | Back alignment and function description |
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| >sp|P0A0F0|RELA_STAAU GTP pyrophosphokinase OS=Staphylococcus aureus GN=relA PE=3 SV=1 | Back alignment and function description |
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| >sp|Q6G8T5|RELA_STAAS GTP pyrophosphokinase OS=Staphylococcus aureus (strain MSSA476) GN=relA PE=3 SV=1 | Back alignment and function description |
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| >sp|Q99TL8|RELA_STAAN GTP pyrophosphokinase OS=Staphylococcus aureus (strain N315) GN=relA PE=1 SV=2 | Back alignment and function description |
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| >sp|Q6GG70|RELA_STAAR GTP pyrophosphokinase OS=Staphylococcus aureus (strain MRSA252) GN=relA PE=3 SV=1 | Back alignment and function description |
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| >sp|Q931Q4|RELA_STAAM GTP pyrophosphokinase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=relA PE=3 SV=2 | Back alignment and function description |
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| >sp|Q54089|RELA_STREQ Bifunctional (p)ppGpp synthase/hydrolase RelA OS=Streptococcus dysgalactiae subsp. equisimilis GN=relA PE=1 SV=1 | Back alignment and function description |
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| >sp|Q8CS97|RELA_STAES GTP pyrophosphokinase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=relA PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 885 | ||||||
| 224131084 | 892 | predicted protein [Populus trichocarpa] | 0.983 | 0.975 | 0.814 | 0.0 | |
| 255564246 | 887 | guanosine-3',5'-bis(diphosphate) 3'-pyro | 0.980 | 0.978 | 0.803 | 0.0 | |
| 297743917 | 883 | unnamed protein product [Vitis vinifera] | 0.986 | 0.988 | 0.805 | 0.0 | |
| 225437434 | 887 | PREDICTED: GTP pyrophosphokinase-like [V | 0.986 | 0.984 | 0.801 | 0.0 | |
| 356503913 | 882 | PREDICTED: GTP pyrophosphokinase-like [G | 0.983 | 0.986 | 0.790 | 0.0 | |
| 356570978 | 882 | PREDICTED: GTP pyrophosphokinase-like [G | 0.983 | 0.986 | 0.787 | 0.0 | |
| 449469300 | 883 | PREDICTED: GTP pyrophosphokinase-like [C | 0.992 | 0.994 | 0.777 | 0.0 | |
| 449484441 | 883 | PREDICTED: LOW QUALITY PROTEIN: GTP pyro | 0.992 | 0.994 | 0.776 | 0.0 | |
| 30268666 | 876 | RelA-SpoT like protein RSH1 [Nicotiana t | 0.988 | 0.998 | 0.765 | 0.0 | |
| 307066606 | 885 | RSH1 [Ipomoea nil] | 0.997 | 0.997 | 0.750 | 0.0 |
| >gi|224131084|ref|XP_002320997.1| predicted protein [Populus trichocarpa] gi|222861770|gb|EEE99312.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 1475 bits (3819), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 725/890 (81%), Positives = 785/890 (88%), Gaps = 20/890 (2%)
Query: 1 MASAASMSVSVECVNICKL-PKGDGSGRYYDCSVLSCAWKAPRALTGFLASTTHPA-HSS 58
MASA+S+SV VEC+NICKL KGDGSGRY +CSVLSCAWKAPR LTGFLAST HP+ S
Sbjct: 1 MASASSLSVPVECLNICKLLSKGDGSGRY-ECSVLSCAWKAPRVLTGFLASTAHPSPQCS 59
Query: 59 SLSLGPTGRRNRINSRCEAFDVGS-WCTEGSDLVLLGKLPRSSLLHVACKRWRLCLSPSV 117
S G GRR + SRC+AFD G + +E SD LLG+ +S L HVA K+W+L S S+
Sbjct: 60 SFLCGRNGRRKQFKSRCKAFDTGGCYSSEDSDFALLGRFFKSRLHHVAGKKWQLSSSSSI 119
Query: 118 SSDAFKEDSPERLWEDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVE 177
S+D F E SPERLWEDL+PT+SYLSP ELELV +AL LAFEAHDGQKRRSGEPFIIHPVE
Sbjct: 120 SADTFNEVSPERLWEDLKPTVSYLSPKELELVHKALKLAFEAHDGQKRRSGEPFIIHPVE 179
Query: 178 VARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLK 237
VARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFG VR IVEGETKVSKLGKLK
Sbjct: 180 VARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGPIVRHIVEGETKVSKLGKLK 239
Query: 238 CKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETL 297
CKNEN SVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMP HKQSSIA ETL
Sbjct: 240 CKNENESVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPLHKQSSIAMETL 299
Query: 298 QVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKK 357
QVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKIL KK
Sbjct: 300 QVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILKKK 359
Query: 358 IEDDQFLDLMTVKTEIRSVCKEPYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGP 417
IE+DQFLDL+TVKT++R+VCKEPYSIY+AVLKS+GSINEVNQIAQLRIII+PKPC G GP
Sbjct: 360 IEEDQFLDLLTVKTDVRAVCKEPYSIYRAVLKSKGSINEVNQIAQLRIIIQPKPCIGAGP 419
Query: 418 LCSPQQICYHVLGLVHGIWTPIPRAMKDYIATPKPNGYQSLHTTLIPFLYESMFRLEVQI 477
LCSPQQICYHVLGLVHGIWTPIPRAMKDYIATPKPNGYQSLHTT+IPFLYESMFRLEVQI
Sbjct: 420 LCSPQQICYHVLGLVHGIWTPIPRAMKDYIATPKPNGYQSLHTTVIPFLYESMFRLEVQI 479
Query: 478 RTEEMDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLNNANIALRISWLNAIR 537
RTEEMDLIAERGIAAHYSGRVFVTGLVGHA PNGRS RGK VCLNNANIALRI WLNAIR
Sbjct: 480 RTEEMDLIAERGIAAHYSGRVFVTGLVGHAMPNGRSTRGKAVCLNNANIALRIGWLNAIR 539
Query: 538 EWQEEFVGNMTSREFVDTITRDLLGSRVFVFTPRGE-----------IKNLPKGATVVDY 586
EWQEEFVGNM+SREFV+TITRDLLGS VFVFTPRGE IKNLPKGAT +DY
Sbjct: 540 EWQEEFVGNMSSREFVETITRDLLGSCVFVFTPRGEFWILIFDDMVQIKNLPKGATAIDY 599
Query: 587 AYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNALSSKSAFQRHKQWLEHAKT 646
AYMIHTEIGNKMVAAKVNGNLVSP HVLANAEVVEIITYNALSSKSAFQRHKQWL+HAKT
Sbjct: 600 AYMIHTEIGNKMVAAKVNGNLVSPMHVLANAEVVEIITYNALSSKSAFQRHKQWLQHAKT 659
Query: 647 RSARHKIMKFLREQAALSASEITADTVGDFVADSGEESEVEDLSDGSKQDKPLWEKILMN 706
RSARHKIMKFLREQAALSA+EITAD+V DF+ADS ESEVED+SD +K+ +PLWEKILMN
Sbjct: 660 RSARHKIMKFLREQAALSAAEITADSVNDFIADSEGESEVEDISDNNKRSRPLWEKILMN 719
Query: 707 VVQMSSPVRNSKAVCSDDNASLWAPKVNGKHNKRVHYVGSKAEGELSSQENSFAKMMHAN 766
VV+ SS + S + ++W PKVNGKHNK V + +G+L SQ N AKM+ A+
Sbjct: 720 VVEKSSQGKCSNDFLPVNYGTVWTPKVNGKHNKHV-----QTKGDLLSQGNGVAKMIQAS 774
Query: 767 VPMYKEVLPGLESWQASKIATWHNLEGHSIQWFSVVCIDRRGIMADVTTALATVGVTICS 826
+P YKEVLPGLESWQASK+A+WH+LEGHSIQWF VVCIDRRG+MA++ TALA V + ICS
Sbjct: 775 IPRYKEVLPGLESWQASKVASWHSLEGHSIQWFCVVCIDRRGMMAEIATALAAVDINICS 834
Query: 827 CVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILGVLGWSTGCSWPSS 876
CV+E DRGRG+AVMLFH+EGNL+SLV CSSVDLI GVLGWSTGCSWPSS
Sbjct: 835 CVSETDRGRGMAVMLFHIEGNLDSLVKGCSSVDLIQGVLGWSTGCSWPSS 884
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255564246|ref|XP_002523120.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, putative [Ricinus communis] gi|223537682|gb|EEF39305.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|297743917|emb|CBI36887.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|225437434|ref|XP_002272154.1| PREDICTED: GTP pyrophosphokinase-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356503913|ref|XP_003520744.1| PREDICTED: GTP pyrophosphokinase-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356570978|ref|XP_003553659.1| PREDICTED: GTP pyrophosphokinase-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|449469300|ref|XP_004152359.1| PREDICTED: GTP pyrophosphokinase-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449484441|ref|XP_004156884.1| PREDICTED: LOW QUALITY PROTEIN: GTP pyrophosphokinase-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|30268666|dbj|BAC76004.1| RelA-SpoT like protein RSH1 [Nicotiana tabacum] | Back alignment and taxonomy information |
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| >gi|307066606|gb|ADN23834.1| RSH1 [Ipomoea nil] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 885 | ||||||
| TAIR|locus:2137869 | 884 | RSH1 "RELA/SPOT homolog 1" [Ar | 0.981 | 0.983 | 0.724 | 0.0 | |
| TIGR_CMR|DET_0005 | 728 | DET_0005 "GTP pyrophosphokinas | 0.352 | 0.428 | 0.398 | 4.9e-101 | |
| TIGR_CMR|CBU_0303 | 707 | CBU_0303 "guanosine-3,5-bis(di | 0.301 | 0.377 | 0.392 | 1.5e-79 | |
| TIGR_CMR|GSU_2236 | 716 | GSU_2236 "GTP pyrophosphokinas | 0.299 | 0.370 | 0.408 | 1.6e-77 | |
| TIGR_CMR|CPS_4973 | 703 | CPS_4973 "guanosine-3,5-bis(di | 0.301 | 0.379 | 0.397 | 6.5e-77 | |
| TIGR_CMR|BA_4637 | 727 | BA_4637 "GTP pyrophosphokinase | 0.302 | 0.368 | 0.427 | 1.5e-76 | |
| UNIPROTKB|Q3A9Z8 | 716 | relA "GTP pyrophosphokinase" [ | 0.294 | 0.364 | 0.425 | 6.8e-75 | |
| TIGR_CMR|CHY_2223 | 716 | CHY_2223 "GTP pyrophosphokinas | 0.294 | 0.364 | 0.425 | 6.8e-75 | |
| TIGR_CMR|SO_0359 | 701 | SO_0359 "guanosine-3,5-bis(dip | 0.297 | 0.375 | 0.414 | 1.2e-65 | |
| UNIPROTKB|P66014 | 738 | relA "Bifunctional (p)ppGpp sy | 0.276 | 0.331 | 0.368 | 7e-60 |
| TAIR|locus:2137869 RSH1 "RELA/SPOT homolog 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 3255 (1150.9 bits), Expect = 0., P = 0.
Identities = 636/878 (72%), Positives = 724/878 (82%)
Query: 12 ECVNICKLPKGDGSGRYYDCSVLSCAWKAPRALTGFLASTTHPAHSSSLSLGPTGRRNRI 71
ECVNIC L KGDG+ R DCS LSCAWKAPRALTGFLAST HP S S G GR++R+
Sbjct: 12 ECVNICNLTKGDGNARS-DCSALSCAWKAPRALTGFLASTAHPPVCSVYSCGRNGRKSRM 70
Query: 72 NSRC--EAFDVGSWCTEGSDLVLLGKLPRSSLLHVACKRWRL-CLSPSVSSDAFKEDSPE 128
+ C + ++ +E V + + +S L KRW L C+S SS A + + E
Sbjct: 71 KA-CAWQRYEYEVGFSEAPYFVNVRNILKSRLSCGGHKRWELYCVSAESSSGASSDVTVE 129
Query: 129 RLWEDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELD 188
LWEDL P+ISYL ELE V++ L LAFEAH GQKRRSGEPFIIHPV VARILGELELD
Sbjct: 130 TLWEDLFPSISYLPRKELEFVQKGLKLAFEAHHGQKRRSGEPFIIHPVAVARILGELELD 189
Query: 189 WESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDV 248
WESI AGLLHDTVEDTN +TFE+IEEEFGATVR IVEGETKVSKLGKLKCK E+ ++QDV
Sbjct: 190 WESIVAGLLHDTVEDTNFITFEKIEEEFGATVRHIVEGETKVSKLGKLKCKTESETIQDV 249
Query: 249 KADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLG 308
KADDLRQMFLAMT+EVRVIIVKLADRLHNMRTL HMPPHKQSSIA ETLQVFAPLAKLLG
Sbjct: 250 KADDLRQMFLAMTDEVRVIIVKLADRLHNMRTLCHMPPHKQSSIAGETLQVFAPLAKLLG 309
Query: 309 MYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFLDLMT 368
MY IKSELENLSFMY +AEDY +V R+A+LYKEHEKEL EAN+IL+KKIEDDQFLDL+T
Sbjct: 310 MYSIKSELENLSFMYVSAEDYDRVTSRIANLYKEHEKELTEANRILVKKIEDDQFLDLVT 369
Query: 369 VKTEIRSVCKEPYSIYKAVLKSRGSINEVNQIAQ-LRIIIKPKPCSGVGPLCSPQQICYH 427
V T++RSVCKE YSIYKA LKS+GSIN+ NQIAQ LRI++KPKP GVGPLCSPQQICYH
Sbjct: 370 VNTDVRSVCKETYSIYKAALKSKGSINDYNQIAQQLRIVVKPKPSVGVGPLCSPQQICYH 429
Query: 428 VLGLVHGIWTPIPRAMKDYIATPKPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAE 487
VLGLVH IW PIPR +KDYIATPKPNGYQSLHTT+IPFLYESMFRLEVQIRTEEMDLIAE
Sbjct: 430 VLGLVHEIWKPIPRTVKDYIATPKPNGYQSLHTTVIPFLYESMFRLEVQIRTEEMDLIAE 489
Query: 488 RGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLNNANIALRISWLNAIREWQEEFVGNM 547
RGIA +Y+G+ TGLVG+A P GR+ RGKT CLNNA+ ALR+ WLNAIREWQEEFVGNM
Sbjct: 490 RGIAVYYNGKSLSTGLVGNAVPLGRNSRGKTGCLNNADFALRVGWLNAIREWQEEFVGNM 549
Query: 548 TSREFVDTITRDLLGSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNL 607
+SREFVDTITRDLLGSRVFVFTP+GEIKNLPKGATVVDYAY+IHTEIGNKMVAAKVNGNL
Sbjct: 550 SSREFVDTITRDLLGSRVFVFTPKGEIKNLPKGATVVDYAYLIHTEIGNKMVAAKVNGNL 609
Query: 608 VSPTHVLANAEVVEIITYNALSSKSAFQRHKQWLEHAKTRSARHKIMKFLREQAALSASE 667
VSPTHVL NAEVVEI+TYNALSSKSAFQRHKQWL+HAKTRSARHKIM+FLREQAA A+E
Sbjct: 610 VSPTHVLENAEVVEIVTYNALSSKSAFQRHKQWLQHAKTRSARHKIMRFLREQAAQCAAE 669
Query: 668 ITADTVGDFVADSGEESEVEDLSDGSKQDKPLWEKILMNVVQMSSPVRNSKAVCSDDNAS 727
IT D V DFVADS +S+VEDL++ S++ WEKIL+NV Q S ++ + N S
Sbjct: 670 ITQDQVNDFVADS--DSDVEDLTEDSRKSLQWWEKILVNVKQFQSQDKSRDTTPAPQNGS 727
Query: 728 LWAPKVNGKHNKRVHYVGSKAEGELSSQENSFAKMMHANVPMYKEVLPGLESWQASKIAT 787
+WAPKVNGKHNK + S E E + A+++ AN+P YKEVLPGL+SW+ SKIAT
Sbjct: 728 VWAPKVNGKHNKAIKN-SSSDEPEFLLPGDGIARILPANIPAYKEVLPGLDSWRDSKIAT 786
Query: 788 WHNLEGHSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGN 847
WH+LEG SI+W VV +DR+GI+A+VTT LA G+ +CSCVAEIDRGRG+AVMLF +E N
Sbjct: 787 WHHLEGQSIEWLCVVSMDRKGIIAEVTTVLAAEGIALCSCVAEIDRGRGLAVMLFQIEAN 846
Query: 848 LESLVNACSSVDLILGVLGWSTGCSWPSSKGDWQFHEC 885
+ESLV+ C+ VDL+LGVLGWS+GCSWP S + Q EC
Sbjct: 847 IESLVSVCAKVDLVLGVLGWSSGCSWPRSTENAQVLEC 884
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| TIGR_CMR|DET_0005 DET_0005 "GTP pyrophosphokinase" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
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| TIGR_CMR|CBU_0303 CBU_0303 "guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
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| TIGR_CMR|GSU_2236 GSU_2236 "GTP pyrophosphokinase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
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| TIGR_CMR|CPS_4973 CPS_4973 "guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
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| TIGR_CMR|BA_4637 BA_4637 "GTP pyrophosphokinase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q3A9Z8 relA "GTP pyrophosphokinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
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| TIGR_CMR|CHY_2223 CHY_2223 "GTP pyrophosphokinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|SO_0359 SO_0359 "guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|P66014 relA "Bifunctional (p)ppGpp synthase/hydrolase relA" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.7.6 | LOW CONFIDENCE prediction! |
| 4th Layer | 2.7.6.5 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 885 | |||
| COG0317 | 701 | COG0317, SpoT, Guanosine polyphosphate pyrophospho | 1e-166 | |
| TIGR00691 | 683 | TIGR00691, spoT_relA, (p)ppGpp synthetase, RelA/Sp | 1e-144 | |
| PRK11092 | 702 | PRK11092, PRK11092, bifunctional (p)ppGpp syntheta | 1e-118 | |
| PRK10872 | 743 | PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophos | 3e-70 | |
| pfam13328 | 156 | pfam13328, HD_4, HD domain | 1e-51 | |
| smart00954 | 111 | smart00954, RelA_SpoT, Region found in RelA / SpoT | 3e-35 | |
| pfam04607 | 116 | pfam04607, RelA_SpoT, Region found in RelA / SpoT | 3e-34 | |
| cd01668 | 60 | cd01668, TGS_RelA_SpoT, TGS_RelA_SpoT: The RelA (S | 1e-30 | |
| cd05399 | 129 | cd05399, NT_Rel-Spo_like, Nucleotidyltransferase ( | 9e-30 | |
| pfam02824 | 60 | pfam02824, TGS, TGS domain | 9e-22 | |
| cd01616 | 60 | cd01616, TGS, The TGS domain, named after the ThrR | 4e-10 | |
| pfam01966 | 111 | pfam01966, HD, HD domain | 7e-08 | |
| cd00077 | 145 | cd00077, HDc, Metal dependent phosphohydrolases wi | 7e-07 | |
| smart00471 | 124 | smart00471, HDc, Metal dependent phosphohydrolases | 1e-06 | |
| cd01669 | 76 | cd01669, TGS_Ygr210_C, TGS_Ygr210_C: The C-termina | 5e-06 | |
| COG2357 | 231 | COG2357, COG2357, PpGpp synthetase catalytic domai | 8e-06 | |
| PRK09602 | 396 | PRK09602, PRK09602, translation-associated GTPase; | 2e-05 | |
| PRK12444 | 639 | PRK12444, PRK12444, threonyl-tRNA synthetase; Revi | 4e-05 | |
| PRK00413 | 638 | PRK00413, thrS, threonyl-tRNA synthetase; Reviewed | 1e-04 | |
| cd01666 | 75 | cd01666, TGS_DRG_C, TGS_DRG_C: DRG (developmentall | 4e-04 | |
| cd02116 | 60 | cd02116, ACT, ACT domains are commonly involved in | 0.001 | |
| pfam10957 | 60 | pfam10957, DUF2758, Protein of unknown function (D | 0.002 | |
| cd04876 | 71 | cd04876, ACT_RelA-SpoT, ACT domain found C-termina | 0.002 | |
| pfam13291 | 77 | pfam13291, ACT_4, ACT domain | 0.003 |
| >gnl|CDD|223394 COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription] | Back alignment and domain information |
|---|
Score = 501 bits (1291), Expect = e-166
Identities = 215/531 (40%), Positives = 310/531 (58%), Gaps = 60/531 (11%)
Query: 130 LWEDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDW 189
E+L +++ P +++A A +AH GQ R+SGEP+I HP+EVA IL EL +D
Sbjct: 8 ELEELLDSLATYLPPVDIELKKAWYYARQAHGGQTRKSGEPYISHPLEVAEILAELHMDM 67
Query: 190 ESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVK 249
E++AA LLHDT+EDT V T E IEE FG V ++VEG TK+ K+G+L + E +
Sbjct: 68 ETLAAALLHDTIEDTPV-TEELIEEIFGKEVAKLVEGVTKLKKIGQLSSEEEL------Q 120
Query: 250 ADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGM 309
A++LR+M LAM +++RV+++KLADRLHN+RTL ++ K+ IA ETL ++APLA LG+
Sbjct: 121 AENLRKMLLAMVKDIRVVLIKLADRLHNLRTLKNLDEEKRRRIARETLDIYAPLAHRLGI 180
Query: 310 YQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFLDLMTV 369
QIK ELE+LSF Y + + Y ++ + + + E E+ +E L ++++ +
Sbjct: 181 GQIKWELEDLSFRYLHPDQYKRIAKLLDEKRLEREQYIENVVSELREELKAAG------I 234
Query: 370 KTEIRSVCKEPYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVL 429
K E+ K YSIY+ + K + S +E+ + +RII+ CY L
Sbjct: 235 KAEVSGRPKHIYSIYRKMQKKKLSFDEIYDVRAVRIIVD------------TIPDCYTAL 282
Query: 430 GLVHGIWTPIPRAMKDYIATPKPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAERG 489
G+VH +W PIP DYIA PKPNGYQSLHTT+I +EVQIRT+EM IAE G
Sbjct: 283 GIVHTLWKPIPGEFDDYIANPKPNGYQSLHTTVI---GPEGKPVEVQIRTKEMHEIAELG 339
Query: 490 IAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLNNANIALRISWLNAIREWQEEFVGNMTS 549
+AAH+ R G + +I+WL + EWQEE + S
Sbjct: 340 VAAHW-----------------RYKEGGSAYEE------KIAWLRQLLEWQEE-SAD--S 373
Query: 550 REFVDTITRDLLGSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVS 609
EF++ + DL RV+VFTP+G++ +LPKGAT +D+AY +HT+IG++ + AKVNG +V
Sbjct: 374 GEFLEQLKSDLFPDRVYVFTPKGKVIDLPKGATPLDFAYAVHTDIGHRCIGAKVNGRIVP 433
Query: 610 PTHVLANAEVVEIITYNALSSKSAFQRHKQWLEHAKTRSARHKIMKFLREQ 660
T L + VEIIT SK A + WL T AR KI + ++Q
Sbjct: 434 LTTKLQTGDQVEIIT-----SKHAGPS-RDWLNFVVTSRARAKIRAWFKKQ 478
|
Length = 701 |
| >gnl|CDD|213552 TIGR00691, spoT_relA, (p)ppGpp synthetase, RelA/SpoT family | Back alignment and domain information |
|---|
| >gnl|CDD|236843 PRK11092, PRK11092, bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|182797 PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|222047 pfam13328, HD_4, HD domain | Back alignment and domain information |
|---|
| >gnl|CDD|214934 smart00954, RelA_SpoT, Region found in RelA / SpoT proteins | Back alignment and domain information |
|---|
| >gnl|CDD|218170 pfam04607, RelA_SpoT, Region found in RelA / SpoT proteins | Back alignment and domain information |
|---|
| >gnl|CDD|133438 cd01668, TGS_RelA_SpoT, TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response | Back alignment and domain information |
|---|
| >gnl|CDD|143389 cd05399, NT_Rel-Spo_like, Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases | Back alignment and domain information |
|---|
| >gnl|CDD|217243 pfam02824, TGS, TGS domain | Back alignment and domain information |
|---|
| >gnl|CDD|133435 cd01616, TGS, The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin | Back alignment and domain information |
|---|
| >gnl|CDD|216815 pfam01966, HD, HD domain | Back alignment and domain information |
|---|
| >gnl|CDD|238032 cd00077, HDc, Metal dependent phosphohydrolases with conserved 'HD' motif | Back alignment and domain information |
|---|
| >gnl|CDD|214679 smart00471, HDc, Metal dependent phosphohydrolases with conserved 'HD' motif | Back alignment and domain information |
|---|
| >gnl|CDD|133439 cd01669, TGS_Ygr210_C, TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea | Back alignment and domain information |
|---|
| >gnl|CDD|225232 COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|236584 PRK09602, PRK09602, translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|183530 PRK12444, PRK12444, threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|234752 PRK00413, thrS, threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|133436 cd01666, TGS_DRG_C, TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2 | Back alignment and domain information |
|---|
| >gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme | Back alignment and domain information |
|---|
| >gnl|CDD|151404 pfam10957, DUF2758, Protein of unknown function (DUF2758) | Back alignment and domain information |
|---|
| >gnl|CDD|153148 cd04876, ACT_RelA-SpoT, ACT domain found C-terminal of the RelA/SpoT domains | Back alignment and domain information |
|---|
| >gnl|CDD|222030 pfam13291, ACT_4, ACT domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 885 | |||
| COG0317 | 701 | SpoT Guanosine polyphosphate pyrophosphohydrolases | 100.0 | |
| PRK10872 | 743 | relA (p)ppGpp synthetase I/GTP pyrophosphokinase; | 100.0 | |
| PRK11092 | 702 | bifunctional (p)ppGpp synthetase II/ guanosine-3', | 100.0 | |
| TIGR00691 | 683 | spoT_relA (p)ppGpp synthetase, RelA/SpoT family. ( | 100.0 | |
| KOG1157 | 543 | consensus Predicted guanosine polyphosphate pyroph | 100.0 | |
| PF13328 | 153 | HD_4: HD domain; PDB: 3NR1_B. | 100.0 | |
| cd05399 | 129 | NT_Rel-Spo_like Nucleotidyltransferase (NT) domain | 99.93 | |
| PF04607 | 115 | RelA_SpoT: Region found in RelA / SpoT proteins; I | 99.93 | |
| COG2357 | 231 | PpGpp synthetase catalytic domain [General functio | 99.9 | |
| PF02824 | 60 | TGS: TGS domain; InterPro: IPR004095 The TGS domai | 99.68 | |
| PF13291 | 80 | ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A. | 99.44 | |
| cd01666 | 75 | TGS_DRG_C TGS_DRG_C: DRG (developmentally regulate | 99.22 | |
| cd01669 | 76 | TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS doma | 99.13 | |
| cd04877 | 74 | ACT_TyrR N-terminal ACT domain of the TyrR protein | 99.09 | |
| cd04887 | 74 | ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te | 99.03 | |
| cd04888 | 76 | ACT_PheB-BS C-terminal ACT domain of a small (~147 | 98.98 | |
| cd01668 | 60 | TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) prote | 98.87 | |
| cd04878 | 72 | ACT_AHAS N-terminal ACT domain of the Escherichia | 98.62 | |
| PRK04435 | 147 | hypothetical protein; Provisional | 98.56 | |
| cd04881 | 79 | ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin | 98.54 | |
| PRK08577 | 136 | hypothetical protein; Provisional | 98.49 | |
| cd04901 | 69 | ACT_3PGDH C-terminal ACT (regulatory) domain of D- | 98.45 | |
| cd01616 | 60 | TGS The TGS domain, named after the ThrRS, GTPase, | 98.45 | |
| PRK06737 | 76 | acetolactate synthase 1 regulatory subunit; Valida | 98.4 | |
| PRK13562 | 84 | acetolactate synthase 1 regulatory subunit; Provis | 98.4 | |
| cd04938 | 76 | TGS_Obg-like TGS_Obg-like: The C-terminal TGS doma | 98.39 | |
| cd04879 | 71 | ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te | 98.35 | |
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 98.32 | |
| cd01667 | 61 | TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Syn | 98.27 | |
| cd04903 | 71 | ACT_LSD C-terminal ACT domain of the L-serine dehy | 98.23 | |
| PRK11152 | 76 | ilvM acetolactate synthase 2 regulatory subunit; P | 98.22 | |
| PF01842 | 66 | ACT: ACT domain; InterPro: IPR002912 The ACT domai | 98.19 | |
| cd04886 | 73 | ACT_ThrD-II-like C-terminal ACT domain of biodegra | 98.18 | |
| cd04876 | 71 | ACT_RelA-SpoT ACT domain found C-terminal of the R | 98.13 | |
| cd04874 | 72 | ACT_Af1403 N-terminal ACT domain of the yet unchar | 98.12 | |
| PRK07334 | 403 | threonine dehydratase; Provisional | 98.11 | |
| PRK08178 | 96 | acetolactate synthase 1 regulatory subunit; Review | 98.11 | |
| TIGR03276 | 179 | Phn-HD phosphonate degradation operons associated | 98.05 | |
| PRK11895 | 161 | ilvH acetolactate synthase 3 regulatory subunit; R | 98.0 | |
| PF13710 | 63 | ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B. | 97.96 | |
| TIGR00119 | 157 | acolac_sm acetolactate synthase, small subunit. ac | 97.93 | |
| PRK00413 | 638 | thrS threonyl-tRNA synthetase; Reviewed | 97.9 | |
| CHL00100 | 174 | ilvH acetohydroxyacid synthase small subunit | 97.76 | |
| cd04875 | 74 | ACT_F4HF-DF N-terminal ACT domain of formyltetrahy | 97.66 | |
| cd04902 | 73 | ACT_3PGDH-xct C-terminal ACT (regulatory) domain o | 97.53 | |
| cd04870 | 75 | ACT_PSP_1 CT domains found N-terminal of phosphose | 97.52 | |
| cd04869 | 81 | ACT_GcvR_2 ACT domains that comprise the Glycine C | 97.47 | |
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 97.46 | |
| cd04893 | 77 | ACT_GcvR_1 ACT domains that comprise the Glycine C | 97.39 | |
| cd04884 | 72 | ACT_CBS C-terminal ACT domain of the cystathionine | 97.3 | |
| PF13740 | 76 | ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A. | 97.29 | |
| PTZ00258 | 390 | GTP-binding protein; Provisional | 97.25 | |
| cd04900 | 73 | ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, | 97.25 | |
| PRK00194 | 90 | hypothetical protein; Validated | 97.25 | |
| cd04889 | 56 | ACT_PDH-BS-like C-terminal ACT domain of the monof | 97.2 | |
| PRK05659 | 66 | sulfur carrier protein ThiS; Validated | 97.16 | |
| cd04925 | 74 | ACT_ACR_2 ACT domain-containing protein which is c | 97.15 | |
| cd04899 | 70 | ACT_ACR-UUR-like_2 C-terminal ACT domains of the b | 97.11 | |
| cd04908 | 66 | ACT_Bt0572_1 N-terminal ACT domain of a novel prot | 97.08 | |
| cd04927 | 76 | ACT_ACR-like_2 Second ACT domain, of a novel type | 97.06 | |
| COG4492 | 150 | PheB ACT domain-containing protein [General functi | 97.05 | |
| PRK06437 | 67 | hypothetical protein; Provisional | 97.03 | |
| cd04872 | 88 | ACT_1ZPV ACT domain proteins similar to the yet un | 97.03 | |
| COG1707 | 218 | ACT domain-containing protein [General function pr | 97.03 | |
| cd04905 | 80 | ACT_CM-PDT C-terminal ACT domain of the bifunction | 97.01 | |
| cd04873 | 70 | ACT_UUR-ACR-like ACT domains of the bacterial sign | 97.0 | |
| cd04885 | 68 | ACT_ThrD-I Tandem C-terminal ACT domains of threon | 96.99 | |
| cd04883 | 72 | ACT_AcuB C-terminal ACT domain of the Bacillus sub | 96.96 | |
| cd00565 | 65 | ThiS ThiaminS ubiquitin-like sulfur carrier protei | 96.96 | |
| cd04882 | 65 | ACT_Bt0572_2 C-terminal ACT domain of a novel prot | 96.92 | |
| cd04896 | 75 | ACT_ACR-like_3 ACT domain-containing protein which | 96.9 | |
| cd04909 | 69 | ACT_PDH-BS C-terminal ACT domain of the monofuncti | 96.87 | |
| PRK12444 | 639 | threonyl-tRNA synthetase; Reviewed | 96.81 | |
| cd04895 | 72 | ACT_ACR_1 ACT domain-containing protein which is c | 96.78 | |
| cd02116 | 60 | ACT ACT domains are commonly involved in specifica | 96.77 | |
| cd04897 | 75 | ACT_ACR_3 ACT domain-containing protein which is c | 96.76 | |
| cd04880 | 75 | ACT_AAAH-PDT-like ACT domain of the nonheme iron-d | 96.75 | |
| PRK13011 | 286 | formyltetrahydrofolate deformylase; Reviewed | 96.73 | |
| PRK07440 | 70 | hypothetical protein; Provisional | 96.73 | |
| cd04926 | 72 | ACT_ACR_4 C-terminal ACT domain, of a novel type o | 96.73 | |
| PRK06944 | 65 | sulfur carrier protein ThiS; Provisional | 96.69 | |
| PRK11589 | 190 | gcvR glycine cleavage system transcriptional repre | 96.68 | |
| PRK01777 | 95 | hypothetical protein; Validated | 96.61 | |
| PLN02908 | 686 | threonyl-tRNA synthetase | 96.54 | |
| TIGR01683 | 64 | thiS thiamine biosynthesis protein ThiS. This mode | 96.54 | |
| PRK07696 | 67 | sulfur carrier protein ThiS; Provisional | 96.49 | |
| PRK08364 | 70 | sulfur carrier protein ThiS; Provisional | 96.43 | |
| cd04928 | 68 | ACT_TyrKc Uncharacterized, N-terminal ACT domain o | 96.4 | |
| PRK08053 | 66 | sulfur carrier protein ThiS; Provisional | 96.33 | |
| TIGR00655 | 280 | PurU formyltetrahydrofolate deformylase. This mode | 96.21 | |
| COG2104 | 68 | ThiS Sulfur transfer protein involved in thiamine | 96.2 | |
| COG0440 | 163 | IlvH Acetolactate synthase, small (regulatory) sub | 96.08 | |
| COG3830 | 90 | ACT domain-containing protein [Signal transduction | 96.04 | |
| PRK06027 | 286 | purU formyltetrahydrofolate deformylase; Reviewed | 95.95 | |
| TIGR01127 | 380 | ilvA_1Cterm threonine dehydratase, medium form. A | 95.92 | |
| PRK06488 | 65 | sulfur carrier protein ThiS; Validated | 95.8 | |
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 95.78 | |
| cd04906 | 85 | ACT_ThrD-I_1 First of two tandem C-terminal ACT do | 95.66 | |
| PRK08198 | 404 | threonine dehydratase; Provisional | 95.64 | |
| cd04931 | 90 | ACT_PAH ACT domain of the nonheme iron-dependent a | 95.62 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 95.57 | |
| cd04904 | 74 | ACT_AAAH ACT domain of the nonheme iron-dependent, | 95.54 | |
| PRK13010 | 289 | purU formyltetrahydrofolate deformylase; Reviewed | 95.51 | |
| PRK11589 | 190 | gcvR glycine cleavage system transcriptional repre | 95.42 | |
| PRK06382 | 406 | threonine dehydratase; Provisional | 95.41 | |
| PRK10820 | 520 | DNA-binding transcriptional regulator TyrR; Provis | 95.34 | |
| PLN02799 | 82 | Molybdopterin synthase sulfur carrier subunit | 95.33 | |
| COG3283 | 511 | TyrR Transcriptional regulator of aromatic amino a | 95.33 | |
| cd04929 | 74 | ACT_TPH ACT domain of the nonheme iron-dependent a | 95.32 | |
| PRK06083 | 84 | sulfur carrier protein ThiS; Provisional | 94.71 | |
| PRK08526 | 403 | threonine dehydratase; Provisional | 94.65 | |
| PF03658 | 84 | Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR00534 | 94.59 | |
| cd04930 | 115 | ACT_TH ACT domain of the nonheme iron-dependent ar | 94.55 | |
| PF14451 | 81 | Ub-Mut7C: Mut7-C ubiquitin | 94.46 | |
| PRK05863 | 65 | sulfur carrier protein ThiS; Provisional | 94.42 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 94.36 | |
| PRK03059 | 856 | PII uridylyl-transferase; Provisional | 94.31 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 94.25 | |
| COG2716 | 176 | GcvR Glycine cleavage system regulatory protein [A | 94.25 | |
| PRK05092 | 931 | PII uridylyl-transferase; Provisional | 94.2 | |
| PRK05007 | 884 | PII uridylyl-transferase; Provisional | 94.2 | |
| cd00754 | 80 | MoaD Ubiquitin domain of MoaD-like proteins. MoaD | 94.17 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 94.12 | |
| PRK03381 | 774 | PII uridylyl-transferase; Provisional | 94.02 | |
| KOG2663 | 309 | consensus Acetolactate synthase, small subunit [Am | 93.88 | |
| cd04871 | 84 | ACT_PSP_2 ACT domains found N-terminal of phosphos | 93.82 | |
| TIGR01693 | 850 | UTase_glnD [Protein-PII] uridylyltransferase. This | 93.8 | |
| TIGR00719 | 208 | sda_beta L-serine dehydratase, iron-sulfur-depende | 93.74 | |
| PRK00275 | 895 | glnD PII uridylyl-transferase; Provisional | 93.56 | |
| PF06071 | 84 | YchF-GTPase_C: Protein of unknown function (DUF933 | 93.15 | |
| PRK11840 | 326 | bifunctional sulfur carrier protein/thiazole synth | 93.13 | |
| PRK03381 | 774 | PII uridylyl-transferase; Provisional | 93.08 | |
| PF02597 | 77 | ThiS: ThiS family; InterPro: IPR003749 ThiS (thiam | 93.01 | |
| PRK01759 | 854 | glnD PII uridylyl-transferase; Provisional | 92.92 | |
| COG4747 | 142 | ACT domain-containing protein [General function pr | 92.79 | |
| PRK04374 | 869 | PII uridylyl-transferase; Provisional | 92.46 | |
| COG2150 | 167 | Predicted regulator of amino acid metabolism, cont | 92.27 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 92.21 | |
| TIGR02079 | 409 | THD1 threonine dehydratase. This model represents | 91.75 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 91.67 | |
| COG0788 | 287 | PurU Formyltetrahydrofolate hydrolase [Nucleotide | 91.33 | |
| PRK14707 | 2710 | hypothetical protein; Provisional | 91.25 | |
| PRK08639 | 420 | threonine dehydratase; Validated | 91.21 | |
| PRK11899 | 279 | prephenate dehydratase; Provisional | 90.79 | |
| PRK05007 | 884 | PII uridylyl-transferase; Provisional | 90.02 | |
| cd04867 | 83 | TGS_YchF_C TGS_YchF_C: This subfamily represents T | 89.96 | |
| PRK05092 | 931 | PII uridylyl-transferase; Provisional | 89.83 | |
| PRK01759 | 854 | glnD PII uridylyl-transferase; Provisional | 89.79 | |
| TIGR01682 | 80 | moaD molybdopterin converting factor, subunit 1, n | 89.7 | |
| PRK15385 | 225 | magnesium transport protein MgtC; Provisional | 89.53 | |
| cd04913 | 75 | ACT_AKii-LysC-BS-like_1 ACT domains of the lysine- | 89.47 | |
| COG4747 | 142 | ACT domain-containing protein [General function pr | 89.19 | |
| PRK04374 | 869 | PII uridylyl-transferase; Provisional | 89.07 | |
| PF13840 | 65 | ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2 | 89.0 | |
| TIGR01693 | 850 | UTase_glnD [Protein-PII] uridylyltransferase. This | 88.67 | |
| PRK00907 | 92 | hypothetical protein; Provisional | 88.65 | |
| COG3978 | 86 | Acetolactate synthase (isozyme II), small (regulat | 88.53 | |
| PRK12483 | 521 | threonine dehydratase; Reviewed | 88.48 | |
| PLN02550 | 591 | threonine dehydratase | 88.27 | |
| PRK04998 | 88 | hypothetical protein; Provisional | 88.06 | |
| COG2844 | 867 | GlnD UTP:GlnB (protein PII) uridylyltransferase [P | 88.03 | |
| PF03927 | 79 | NapD: NapD protein; InterPro: IPR005623 This entry | 87.45 | |
| TIGR01270 | 464 | Trp_5_monoox tryptophan 5-monooxygenase, tetrameri | 87.37 | |
| cd04891 | 61 | ACT_AK-LysC-DapG-like_1 ACT domains of the lysine- | 86.99 | |
| COG2914 | 99 | Uncharacterized protein conserved in bacteria [Fun | 86.91 | |
| PRK00341 | 91 | hypothetical protein; Provisional | 86.66 | |
| COG0077 | 279 | PheA Prephenate dehydratase [Amino acid transport | 85.88 | |
| PRK00275 | 895 | glnD PII uridylyl-transferase; Provisional | 85.85 | |
| TIGR01124 | 499 | ilvA_2Cterm threonine ammonia-lyase, biosynthetic, | 85.53 | |
| PRK10622 | 386 | pheA bifunctional chorismate mutase/prephenate deh | 85.15 | |
| PRK03059 | 856 | PII uridylyl-transferase; Provisional | 84.99 | |
| cd04932 | 75 | ACT_AKiii-LysC-EC_1 ACT domains located C-terminal | 83.96 | |
| PRK10553 | 87 | assembly protein for periplasmic nitrate reductase | 83.77 | |
| PRK02047 | 91 | hypothetical protein; Provisional | 82.92 | |
| PRK09224 | 504 | threonine dehydratase; Reviewed | 82.51 | |
| TIGR03401 | 228 | cyanamide_fam HD domain protein, cyanamide hydrata | 82.44 | |
| TIGR01268 | 436 | Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetra | 82.13 | |
| PRK12703 | 339 | tRNA 2'-O-methylase; Reviewed | 81.8 | |
| TIGR01687 | 88 | moaD_arch MoaD family protein, archaeal. Members o | 80.77 | |
| PF04359 | 85 | DUF493: Protein of unknown function (DUF493); Inte | 80.64 | |
| cd04934 | 73 | ACT_AK-Hom3_1 CT domains located C-terminal to the | 80.34 |
| >COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-179 Score=1550.59 Aligned_cols=673 Identities=36% Similarity=0.553 Sum_probs=605.3
Q ss_pred CCCChHHHHHhhhhhhcCCChhhHHHHHHHHHHHHHhhcCCCcccCCcccchHHHHHHHHHHcCCCHHHHHHHhhccccc
Q 002745 123 KEDSPERLWEDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVE 202 (885)
Q Consensus 123 ~~~~~~~~~~~~~~~~~y~~~~~~~~l~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~iLa~l~~D~~tI~AALLHDvvE 202 (885)
.+++.+++.+.+. .|.++.+.+ +.+|+.||.++|.+|+|+||+|||.||++||.||+++++|.++++||||||++|
T Consensus 5 ~~~~~~~~~~~~~---~~~~~~~~~-l~kA~~~A~q~H~~q~r~SGePYi~Hpl~Va~iLael~~d~~tl~AaLLHD~vE 80 (701)
T COG0317 5 GCVELEELLDSLA---TYLPPVDIE-LKKAWYYARQAHGGQTRKSGEPYISHPLEVAEILAELHMDMETLAAALLHDTIE 80 (701)
T ss_pred ccccHHHHHHHHH---hcCChHHHH-HHHHHHHHHHHhHhhcCcCCCchhhCHHHHHHHHHHccCCHHHHHHHHccchHh
Confidence 4566777777665 566666666 999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHhCHHHHHHHhhhcccccccccccccCCcchhhhhHHHHHHHHHhccCCceEEeehhhhHHhhhhhcc
Q 002745 203 DTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLS 282 (885)
Q Consensus 203 DT~~~t~e~I~~~FG~~Va~LV~glTk~s~l~~~~~~~~~~~~~~~qae~lRkmLlAm~~DiRvvLIKLADRLhNmRtL~ 282 (885)
||+ +|.++|++.||++|++||+||||+.+++++. +.+..|+||+||||+||++|+||++|||||||||||||.
T Consensus 81 Dt~-~t~e~i~~~FG~eVa~LV~GvTkl~~i~~~~------~~~~~qaen~rkmllAm~~DiRvilIKLADRLhNmrtl~ 153 (701)
T COG0317 81 DTP-VTEELIEEIFGKEVAKLVEGVTKLKKIGQLS------SEEELQAENLRKMLLAMVKDIRVVLIKLADRLHNLRTLK 153 (701)
T ss_pred cCC-CCHHHHHHHHCHHHHHHHhhHHHhhhhhccC------ccchhHHHHHHHHHHHhccCccEEEeehhhhhhhcccCc
Confidence 999 8999999999999999999999998886432 234458999999999999999999999999999999999
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHhchHHHHHHHhcccccccChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhc
Q 002745 283 HMPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQ 362 (885)
Q Consensus 283 ~~~~~kq~~iA~ETl~iyaPLA~rLGi~~ik~ELEDL~f~~l~p~~y~~i~~~l~~~~~~~~~~i~~~~~~L~~~L~~~~ 362 (885)
+.+++||+++|+||++|||||||||||+++|||||||||+|++|++|+.|++.|.+.|.+|+++++++...|++.|.++
T Consensus 154 ~~~~ek~~riakETl~IyAPLA~RLGi~~iK~ELEDlsFr~l~P~~Y~~I~~~l~e~r~~re~~i~~~~~~l~~~L~~~- 232 (701)
T COG0317 154 NLDEEKRRRIARETLDIYAPLAHRLGIGQIKWELEDLSFRYLHPDQYKRIAKLLDEKRLEREQYIENVVSELREELKAA- 232 (701)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-
Confidence 9889999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccccccceeEEEEEecChHHHHHHHHhcCCCCCccceeEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhccCCccccc
Q 002745 363 FLDLMTVKTEIRSVCKEPYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRA 442 (885)
Q Consensus 363 ~l~~~~i~~~V~gR~K~~ySI~~Km~rk~~~~~ei~Di~g~RIIV~~~~~~~~~~~~~~~~dCY~vLg~Ih~~~~pip~r 442 (885)
|+.++|.||+||+||||+||++|+..|+||+|++||||||++ ..|||++||+||.+|+|+|||
T Consensus 233 -----gi~a~v~gR~KhiYSIyrKM~~k~~~f~~I~Dl~avRiIv~~------------~~dCY~~LGiVH~~~kp~Pgr 295 (701)
T COG0317 233 -----GIKAEVSGRPKHIYSIYRKMQKKKLSFDEIYDVRAVRIIVDT------------IPDCYTALGIVHTLWKPIPGE 295 (701)
T ss_pred -----CCeEEEEcCCCcccHHHHHHHHcccChhhhhhheeEEEEECC------------hHHHHHHHHHHHhcCcCCCCc
Confidence 489999999999999999999999999999999999999996 469999999999999999999
Q ss_pred ccccccCCCCCCccceeEEEeccCCccceeEEEEEechhHHHHHHHhHHhhccCCccccccccCCCCCCCCCCCcccccc
Q 002745 443 MKDYIATPKPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLN 522 (885)
Q Consensus 443 ~kDyIa~PK~NGYqSLHttV~~~~~~~~~~vEIQIRT~~Mh~~AE~Giaahw~yK~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (885)
||||||+||+||||||||||+++. |.++||||||++||++||+|+||||+||+++
T Consensus 296 FKDYIA~PK~NgYQSlHTtv~gp~---g~~vEvQIRT~eMh~~AE~GvAAHW~YKe~~---------------------- 350 (701)
T COG0317 296 FDDYIANPKPNGYQSLHTTVIGPE---GKPVEVQIRTKEMHEIAELGVAAHWRYKEGG---------------------- 350 (701)
T ss_pred cccccccCCCCCCceeEEEEECCC---CceEEEEEecHHHHHHHhhhHHHHhHhhcCC----------------------
Confidence 999999999999999999999766 3799999999999999999999999999952
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhcCCCchhhhhhhcccccCcceEeecCCCceEecCCCCcHhHHHHhcccccccceEEEE
Q 002745 523 NANIALRISWLNAIREWQEEFVGNMTSREFVDTITRDLLGSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAK 602 (885)
Q Consensus 523 ~~~~~~~~~wl~~l~e~~~~~~~~~~~~ef~~~~k~dl~~~~V~VftP~G~i~~lp~gsT~lDfAy~ih~~ig~~~~~ak 602 (885)
..+...+.||++|+|||++.. ++.||+|++|.|||+|+||||||+|++++||.||||+||||+|||++|++|+|||
T Consensus 351 -~~~~~~~~Wlr~lle~q~~~~---d~~ef~e~~k~dlf~d~VyvfTPkG~vi~LP~GatplDFAY~vHt~iG~~c~gAk 426 (701)
T COG0317 351 -SAYEEKIAWLRQLLEWQEESA---DSGEFLEQLKSDLFPDRVYVFTPKGKVIDLPKGATPLDFAYAVHTDIGHRCIGAK 426 (701)
T ss_pred -chhhHHHHHHHHHHHHHHhcC---CcHHHHHHHhhcccCceEEEECCCCCEEeCCCCCcchhhhhhhhchhcceeeEEE
Confidence 013456899999999999953 5799999999999999999999999999999999999999999999999999999
Q ss_pred ECCEecCCCccCCCCCeEEEEecCCCCCccccCCChhHHHhhcChhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhcCC
Q 002745 603 VNGNLVSPTHVLANAEVVEIITYNALSSKSAFQRHKQWLEHAKTRSARHKIMKFLREQAALSASEITADTVGDFVADSGE 682 (885)
Q Consensus 603 vNG~~v~l~~~L~~gd~VeIit~~~~~~~~~~~p~~~WL~~v~T~~Ar~kIr~~l~~~~~~~~~~~g~~~l~~~~~~~~~ 682 (885)
|||++|||+++|+|||+|||||+++. +|+++||+||+|+|||+|||+|||++.+++++.+|+++|++.+.++++
T Consensus 427 VnG~ivpl~~~Lk~Gd~VEIit~k~~------~Ps~~Wl~~v~t~kAR~kIr~~~k~~~re~~i~~G~~lLe~~l~~~g~ 500 (701)
T COG0317 427 VNGRIVPLTTKLQTGDQVEIITSKHA------GPSRDWLNFVVTSRARAKIRAWFKKQDRDENVEAGRELLEKELSRLGL 500 (701)
T ss_pred ECCEEeccceecCCCCEEEEEeCCCC------CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999863 589999999999999999999999999999999999999988886444
Q ss_pred C------------CcchhhhccCCCChhhHHHHHHHHhhcCCCccccccccccCCccCCCCcccCC------CCcccccc
Q 002745 683 E------------SEVEDLSDGSKQDKPLWEKILMNVVQMSSPVRNSKAVCSDDNASLWAPKVNGK------HNKRVHYV 744 (885)
Q Consensus 683 ~------------~~~edl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~------~akcC~PV 744 (885)
. .+.||||.++|.|+.++.+++..+. ...... ......... ......|.|. .++||+|+
T Consensus 501 ~~~~~~~l~~~~~~~~edl~a~ig~g~~~~~~v~~~l~-~~~~~~-~~~~~~~~~-~~~~~~v~G~~~l~~~~a~CC~Pi 577 (701)
T COG0317 501 PKELEELLEKLNFKTVEDLYAAVGAGDIRLNHVVNALQ-KLNEPP-LEKLSRKSI-GKGGVLVEGVGNLLTHLAKCCQPV 577 (701)
T ss_pred ChHHHHHHHHhCCCCHHHHHHHhccCCCCHHHHHHHHH-hccccc-hhhhhcccc-CCCceEEeccCCceeEeecCCCCC
Confidence 2 3569999999999999988887766 221111 000000000 0123345553 58999999
Q ss_pred CCC-eeEEeecCCCceEEe--ecCCccchhhhCCCccccccccccccCCCC-CceeEEEEEEEeccccHHHHHHHHHHhC
Q 002745 745 GSK-AEGELSSQENSFAKM--MHANVPMYKEVLPGLESWQASKIATWHNLE-GHSIQWFSVVCIDRRGIMADVTTALATV 820 (885)
Q Consensus 745 pGD-IVGyITsrGrGItrh--dC~N~~~l~e~~~~~er~i~~~~v~W~~~~-~~~~~~I~V~a~DR~GlLadItsvIa~~ 820 (885)
||| |||||| +||||+|| ||+|+.++.. ..||||++ |+|+... ..|.+.|.|++.||+|+|++|+++|++.
T Consensus 578 pGD~IvG~it-~g~Gi~iHr~dC~~~~~~~~--~~per~i~---v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~ 651 (701)
T COG0317 578 PGDPIVGYIT-KGRGISIHRQDCPNFLQLAG--HAPERVID---VSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANE 651 (701)
T ss_pred CCCcEEEEEe-cCCcEEEehhcChhHHHhhh--cCcceEEE---EEecCCCCcceEEEEEEEEccccchHHHHHHHHHhC
Confidence 986 999997 99999998 8998887754 36889998 9998764 4577999999999999999999999999
Q ss_pred CcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeeccc
Q 002745 821 GVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGWST 869 (885)
Q Consensus 821 ~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~kI~~V~gV~~V~~ 869 (885)
++||.++++.++ +.+.+.|.|+|+ +|..||.+||++|+++++|++|++
T Consensus 652 ~~ni~~v~~~~~-~~~~~~~~~~i~v~n~~~L~~i~~~l~~~~~V~~v~R 700 (701)
T COG0317 652 KINVLGVNTRSD-KDQFATMQFTIEVKNLNHLGRVLARLKQLPDVISVRR 700 (701)
T ss_pred CCceEEeecccc-CCceEEEEEEEEECcHHHHHHHHHHHhcCCCeEEEEe
Confidence 999999999976 568999999999 999999999999999999999986
|
|
| >PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional | Back alignment and domain information |
|---|
| >PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional | Back alignment and domain information |
|---|
| >TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family | Back alignment and domain information |
|---|
| >KOG1157 consensus Predicted guanosine polyphosphate pyrophosphohydrolase/synthase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF13328 HD_4: HD domain; PDB: 3NR1_B | Back alignment and domain information |
|---|
| >cd05399 NT_Rel-Spo_like Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases | Back alignment and domain information |
|---|
| >PF04607 RelA_SpoT: Region found in RelA / SpoT proteins; InterPro: IPR007685 The functions of Escherichia coli RelA and SpoT differ somewhat | Back alignment and domain information |
|---|
| >COG2357 PpGpp synthetase catalytic domain [General function prediction only] | Back alignment and domain information |
|---|
| >PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) [] | Back alignment and domain information |
|---|
| >PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A | Back alignment and domain information |
|---|
| >cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2 | Back alignment and domain information |
|---|
| >cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea | Back alignment and domain information |
|---|
| >cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein | Back alignment and domain information |
|---|
| >cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains | Back alignment and domain information |
|---|
| >cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a | Back alignment and domain information |
|---|
| >cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response | Back alignment and domain information |
|---|
| >cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS) | Back alignment and domain information |
|---|
| >PRK04435 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains | Back alignment and domain information |
|---|
| >PRK08577 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria | Back alignment and domain information |
|---|
| >cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin | Back alignment and domain information |
|---|
| >PRK06737 acetolactate synthase 1 regulatory subunit; Validated | Back alignment and domain information |
|---|
| >PRK13562 acetolactate synthase 1 regulatory subunit; Provisional | Back alignment and domain information |
|---|
| >cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF | Back alignment and domain information |
|---|
| >cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) | Back alignment and domain information |
|---|
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
| >cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA | Back alignment and domain information |
|---|
| >cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit | Back alignment and domain information |
|---|
| >PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional | Back alignment and domain information |
|---|
| >PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold | Back alignment and domain information |
|---|
| >cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains | Back alignment and domain information |
|---|
| >cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains | Back alignment and domain information |
|---|
| >cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a | Back alignment and domain information |
|---|
| >PRK07334 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
| >PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed | Back alignment and domain information |
|---|
| >TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein | Back alignment and domain information |
|---|
| >PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed | Back alignment and domain information |
|---|
| >PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B | Back alignment and domain information |
|---|
| >TIGR00119 acolac_sm acetolactate synthase, small subunit | Back alignment and domain information |
|---|
| >PRK00413 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >CHL00100 ilvH acetohydroxyacid synthase small subunit | Back alignment and domain information |
|---|
| >cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) | Back alignment and domain information |
|---|
| >cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) | Back alignment and domain information |
|---|
| >cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB) | Back alignment and domain information |
|---|
| >cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains | Back alignment and domain information |
|---|
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
| >cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains | Back alignment and domain information |
|---|
| >cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria | Back alignment and domain information |
|---|
| >PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A | Back alignment and domain information |
|---|
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
| >cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains | Back alignment and domain information |
|---|
| >PRK00194 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate | Back alignment and domain information |
|---|
| >PRK05659 sulfur carrier protein ThiS; Validated | Back alignment and domain information |
|---|
| >cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
|---|
| >cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains | Back alignment and domain information |
|---|
| >cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains | Back alignment and domain information |
|---|
| >cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
|---|
| >COG4492 PheB ACT domain-containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >PRK06437 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein | Back alignment and domain information |
|---|
| >COG1707 ACT domain-containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme | Back alignment and domain information |
|---|
| >cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD | Back alignment and domain information |
|---|
| >cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) | Back alignment and domain information |
|---|
| >cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB | Back alignment and domain information |
|---|
| >cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein | Back alignment and domain information |
|---|
| >cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains | Back alignment and domain information |
|---|
| >cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
|---|
| >cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) | Back alignment and domain information |
|---|
| >PRK12444 threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
|---|
| >cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme | Back alignment and domain information |
|---|
| >cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
|---|
| >cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) | Back alignment and domain information |
|---|
| >PRK13011 formyltetrahydrofolate deformylase; Reviewed | Back alignment and domain information |
|---|
| >PRK07440 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
|---|
| >PRK06944 sulfur carrier protein ThiS; Provisional | Back alignment and domain information |
|---|
| >PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional | Back alignment and domain information |
|---|
| >PRK01777 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PLN02908 threonyl-tRNA synthetase | Back alignment and domain information |
|---|
| >TIGR01683 thiS thiamine biosynthesis protein ThiS | Back alignment and domain information |
|---|
| >PRK07696 sulfur carrier protein ThiS; Provisional | Back alignment and domain information |
|---|
| >PRK08364 sulfur carrier protein ThiS; Provisional | Back alignment and domain information |
|---|
| >cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains | Back alignment and domain information |
|---|
| >PRK08053 sulfur carrier protein ThiS; Provisional | Back alignment and domain information |
|---|
| >TIGR00655 PurU formyltetrahydrofolate deformylase | Back alignment and domain information |
|---|
| >COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >COG3830 ACT domain-containing protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK06027 purU formyltetrahydrofolate deformylase; Reviewed | Back alignment and domain information |
|---|
| >TIGR01127 ilvA_1Cterm threonine dehydratase, medium form | Back alignment and domain information |
|---|
| >PRK06488 sulfur carrier protein ThiS; Validated | Back alignment and domain information |
|---|
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
| >cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) | Back alignment and domain information |
|---|
| >PRK08198 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
| >cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH) | Back alignment and domain information |
|---|
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) | Back alignment and domain information |
|---|
| >PRK13010 purU formyltetrahydrofolate deformylase; Reviewed | Back alignment and domain information |
|---|
| >PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional | Back alignment and domain information |
|---|
| >PRK06382 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
| >PRK10820 DNA-binding transcriptional regulator TyrR; Provisional | Back alignment and domain information |
|---|
| >PLN02799 Molybdopterin synthase sulfur carrier subunit | Back alignment and domain information |
|---|
| >COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes | Back alignment and domain information |
|---|
| >PRK06083 sulfur carrier protein ThiS; Provisional | Back alignment and domain information |
|---|
| >PRK08526 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
| >PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function | Back alignment and domain information |
|---|
| >cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH) | Back alignment and domain information |
|---|
| >PF14451 Ub-Mut7C: Mut7-C ubiquitin | Back alignment and domain information |
|---|
| >PRK05863 sulfur carrier protein ThiS; Provisional | Back alignment and domain information |
|---|
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
| >PRK03059 PII uridylyl-transferase; Provisional | Back alignment and domain information |
|---|
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PRK05092 PII uridylyl-transferase; Provisional | Back alignment and domain information |
|---|
| >PRK05007 PII uridylyl-transferase; Provisional | Back alignment and domain information |
|---|
| >cd00754 MoaD Ubiquitin domain of MoaD-like proteins | Back alignment and domain information |
|---|
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >PRK03381 PII uridylyl-transferase; Provisional | Back alignment and domain information |
|---|
| >KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB) | Back alignment and domain information |
|---|
| >TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase | Back alignment and domain information |
|---|
| >TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit | Back alignment and domain information |
|---|
| >PRK00275 glnD PII uridylyl-transferase; Provisional | Back alignment and domain information |
|---|
| >PF06071 YchF-GTPase_C: Protein of unknown function (DUF933); InterPro: IPR013029 This domain is found at the C terminus of family of conserved hypothetical proteins found in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
| >PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional | Back alignment and domain information |
|---|
| >PRK03381 PII uridylyl-transferase; Provisional | Back alignment and domain information |
|---|
| >PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer | Back alignment and domain information |
|---|
| >PRK01759 glnD PII uridylyl-transferase; Provisional | Back alignment and domain information |
|---|
| >COG4747 ACT domain-containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >PRK04374 PII uridylyl-transferase; Provisional | Back alignment and domain information |
|---|
| >COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only] | Back alignment and domain information |
|---|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >TIGR02079 THD1 threonine dehydratase | Back alignment and domain information |
|---|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
| >COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
| >PRK14707 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK08639 threonine dehydratase; Validated | Back alignment and domain information |
|---|
| >PRK11899 prephenate dehydratase; Provisional | Back alignment and domain information |
|---|
| >PRK05007 PII uridylyl-transferase; Provisional | Back alignment and domain information |
|---|
| >cd04867 TGS_YchF_C TGS_YchF_C: This subfamily represents TGS domain-containing YchF GTP-binding protein, a universally conserved GTPase whose function is unknown | Back alignment and domain information |
|---|
| >PRK05092 PII uridylyl-transferase; Provisional | Back alignment and domain information |
|---|
| >PRK01759 glnD PII uridylyl-transferase; Provisional | Back alignment and domain information |
|---|
| >TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal | Back alignment and domain information |
|---|
| >PRK15385 magnesium transport protein MgtC; Provisional | Back alignment and domain information |
|---|
| >cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins | Back alignment and domain information |
|---|
| >COG4747 ACT domain-containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >PRK04374 PII uridylyl-transferase; Provisional | Back alignment and domain information |
|---|
| >PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D | Back alignment and domain information |
|---|
| >TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase | Back alignment and domain information |
|---|
| >PRK00907 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown] | Back alignment and domain information |
|---|
| >PRK12483 threonine dehydratase; Reviewed | Back alignment and domain information |
|---|
| >PLN02550 threonine dehydratase | Back alignment and domain information |
|---|
| >PRK04998 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC | Back alignment and domain information |
|---|
| >TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric | Back alignment and domain information |
|---|
| >cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins | Back alignment and domain information |
|---|
| >COG2914 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >PRK00341 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PRK00275 glnD PII uridylyl-transferase; Provisional | Back alignment and domain information |
|---|
| >TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form | Back alignment and domain information |
|---|
| >PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional | Back alignment and domain information |
|---|
| >PRK03059 PII uridylyl-transferase; Provisional | Back alignment and domain information |
|---|
| >cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII | Back alignment and domain information |
|---|
| >PRK10553 assembly protein for periplasmic nitrate reductase; Provisional | Back alignment and domain information |
|---|
| >PRK02047 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK09224 threonine dehydratase; Reviewed | Back alignment and domain information |
|---|
| >TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family | Back alignment and domain information |
|---|
| >TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form | Back alignment and domain information |
|---|
| >PRK12703 tRNA 2'-O-methylase; Reviewed | Back alignment and domain information |
|---|
| >TIGR01687 moaD_arch MoaD family protein, archaeal | Back alignment and domain information |
|---|
| >PF04359 DUF493: Protein of unknown function (DUF493); InterPro: IPR007454 This family includes several proteins of uncharacterised function | Back alignment and domain information |
|---|
| >cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 885 | ||||
| 1vj7_A | 393 | Crystal Structure Of The Bifunctional Catalytic Fra | 9e-68 | ||
| 3hvz_A | 78 | Crystal Structure Of The Tgs Domain Of The Clolep_0 | 1e-12 | ||
| 2kmm_A | 73 | Solution Nmr Structure Of The Tgs Domain Of Pg1808 | 4e-12 | ||
| 3nr1_A | 178 | A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Pl | 2e-11 | ||
| 3nqw_A | 179 | A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Pl | 5e-05 |
| >pdb|1VJ7|A Chain A, Crystal Structure Of The Bifunctional Catalytic Fragment Of Relseq, The RelaSPOT HOMOLOG FROM STREPTOCOCCUS EQUISIMILIS. Length = 393 | Back alignment and structure |
|
| >pdb|3HVZ|A Chain A, Crystal Structure Of The Tgs Domain Of The Clolep_03100 Protein From Clostridium Leptum, Northeast Structural Genomics Consortium Target Qlr13a Length = 78 | Back alignment and structure |
| >pdb|2KMM|A Chain A, Solution Nmr Structure Of The Tgs Domain Of Pg1808 From Porphyromonas Gingivalis. Northeast Structural Genomics Consortium Target Pgr122a (418-481) Length = 73 | Back alignment and structure |
| >pdb|3NR1|A Chain A, A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Plays A Role In Starvation Responses Length = 178 | Back alignment and structure |
| >pdb|3NQW|A Chain A, A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Plays A Role In Starvation Responses Length = 179 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8 Length = 393 | Back alignment and structure |
|---|
Score = 456 bits (1176), Expect = e-154
Identities = 147/438 (33%), Positives = 242/438 (55%), Gaps = 56/438 (12%)
Query: 127 PERLWEDLRPTI-SYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGEL 185
E++ Y++ + V++AL A AH Q R+SGEP+I+HP++VA IL +L
Sbjct: 5 INLTGEEVVALAAKYMNETDAAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADL 64
Query: 186 ELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSV 245
LD ++A G LHD VEDT++ T + IE +FG VR IV+G V+KLGK++ K S
Sbjct: 65 HLDAVTVACGFLHDVVEDTDI-TLDNIEFDFGKDVRDIVDG---VTKLGKVEYK----SH 116
Query: 246 QDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAK 305
++ A++ R+M +AM++++RVI+VKLADRLHNMRTL H+ KQ I+ ET++++APLA
Sbjct: 117 EEQLAENHRKMLMAMSKDIRVILVKLADRLHNMRTLKHLRKDKQERISRETMEIYAPLAH 176
Query: 306 LLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFLD 365
LG+ +IK ELE+L+F Y N ++ K+ + + +E E +++ + +
Sbjct: 177 RLGISRIKWELEDLAFRYLNETEFYKISHMMNEKRREREALVDDIVTKIKSYTTEQG--- 233
Query: 366 LMTVKTEIRSVCKEPYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQIC 425
+ ++ K YSIY+ + + +++ + +R +++ +
Sbjct: 234 ---LFGDVYGRPKHIYSIYRKMRDKKKRFDQIFDLIAIRCVMETQS------------DV 278
Query: 426 YHVLGLVHGIWTPIPRAMKDYIATPKPNGYQSLHTTLI-PFLYESMFRLEVQIRTEEMDL 484
Y ++G +H +W P+P KDYIA PK NGYQS+HTT+ P +E+QIRT+EM
Sbjct: 279 YAMVGYIHELWRPMPGRFKDYIAAPKANGYQSIHTTVYGPK-----GPIEIQIRTKEMHQ 333
Query: 485 IAERGIAAH--YSGRVFVTGLVGHARPNGRSPRGKTVCLNNANIALRISWLNAIREWQEE 542
+AE G+AAH Y +G +N A + ++W+ + E Q+
Sbjct: 334 VAEYGVAAHWAYK-------------------KGVRGKVNQAEQKVGMNWIKELVELQDA 374
Query: 543 FVGNMTSREFVDTITRDL 560
G+ + +FVD++
Sbjct: 375 SNGD--AVDFVDSLEHHH 390
|
| >3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens} Length = 178 | Back alignment and structure |
|---|
| >3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster} Length = 179 | Back alignment and structure |
|---|
| >3l9d_A SMU.1046C, putative GTP pyrophosphokinase; transferase; 2.48A {Streptococcus mutans} Length = 255 | Back alignment and structure |
|---|
| >2be3_A GTP pyrophosphokinase; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG, transferase; HET: PG4; 2.40A {Streptococcus pneumoniae} SCOP: d.218.1.8 Length = 226 | Back alignment and structure |
|---|
| >3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum} Length = 78 | Back alignment and structure |
|---|
| >2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis} Length = 73 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Length = 195 | Back alignment and structure |
|---|
| >2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens} Length = 93 | Back alignment and structure |
|---|
| >1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Length = 642 | Back alignment and structure |
|---|
| >1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Length = 645 | Back alignment and structure |
|---|
| >1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A* Length = 224 | Back alignment and structure |
|---|
| >2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A Length = 88 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 885 | ||||
| d1vj7a1 | 192 | a.211.1.1 (A:5-196) Stringent response-like protei | 1e-50 | |
| d1vj7a2 | 175 | d.218.1.8 (A:197-371) Stringent response-like prot | 2e-21 | |
| d1wxqa2 | 76 | d.15.10.2 (A:320-395) GTP-binding protein PH0525 { | 1e-17 | |
| d2be3a1 | 203 | d.218.1.8 (A:1-203) Putative GTP pyrophosphokinase | 1e-17 | |
| d1nyra2 | 59 | d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS | 1e-15 | |
| d1tkea1 | 62 | d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS | 2e-15 | |
| d1zpva1 | 83 | d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Strepto | 7e-06 | |
| d1u8sa1 | 86 | d.58.18.5 (A:2-87) putative transcriptional repres | 3e-05 | |
| d1y7pa2 | 77 | d.58.18.12 (A:2-78) Hypothetical protein AF1403, N | 1e-04 | |
| d1u8sa2 | 93 | d.58.18.5 (A:88-180) putative transcriptional repr | 6e-04 |
| >d1vj7a1 a.211.1.1 (A:5-196) Stringent response-like protein RelA N-terminal domain {Streptococcus equisimilis [TaxId: 119602]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: HD-domain/PDEase-like superfamily: HD-domain/PDEase-like family: HD domain domain: Stringent response-like protein RelA N-terminal domain species: Streptococcus equisimilis [TaxId: 119602]
Score = 174 bits (441), Expect = 1e-50
Identities = 90/194 (46%), Positives = 131/194 (67%), Gaps = 8/194 (4%)
Query: 132 EDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWES 191
E + Y++ + V++AL A AH Q R+SGEP+I+HP++VA IL +L LD +
Sbjct: 7 EVVALAAKYMNETDAAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAVT 66
Query: 192 IAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKAD 251
+A G LHD VEDT++ T + IE +FG VR IV+G TK+ K E S ++ A+
Sbjct: 67 VACGFLHDVVEDTDI-TLDNIEFDFGKDVRDIVDGVTKLGK-------VEYKSHEEQLAE 118
Query: 252 DLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMYQ 311
+ R+M +AM++++RVI+VKLADRLHNMRTL H+ KQ I+ ET++++APLA LG+ +
Sbjct: 119 NHRKMLMAMSKDIRVILVKLADRLHNMRTLKHLRKDKQERISRETMEIYAPLAHRLGISR 178
Query: 312 IKSELENLSFMYTN 325
IK ELE+L+F Y N
Sbjct: 179 IKWELEDLAFRYLN 192
|
| >d1vj7a2 d.218.1.8 (A:197-371) Stringent response-like protein RelA domain 2 {Streptococcus equisimilis [TaxId: 119602]} Length = 175 | Back information, alignment and structure |
|---|
| >d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} Length = 76 | Back information, alignment and structure |
|---|
| >d2be3a1 d.218.1.8 (A:1-203) Putative GTP pyrophosphokinase SP1097 {Streptococcus pneumoniae [TaxId: 1313]} Length = 203 | Back information, alignment and structure |
|---|
| >d1nyra2 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Staphylococcus aureus [TaxId: 1280]} Length = 59 | Back information, alignment and structure |
|---|
| >d1tkea1 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Escherichia coli [TaxId: 562]} Length = 62 | Back information, alignment and structure |
|---|
| >d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]} Length = 83 | Back information, alignment and structure |
|---|
| >d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Length = 86 | Back information, alignment and structure |
|---|
| >d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 77 | Back information, alignment and structure |
|---|
| >d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Length = 93 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 885 | |||
| d1vj7a1 | 192 | Stringent response-like protein RelA N-terminal do | 100.0 | |
| d1vj7a2 | 175 | Stringent response-like protein RelA domain 2 {Str | 100.0 | |
| d2be3a1 | 203 | Putative GTP pyrophosphokinase SP1097 {Streptococc | 99.98 | |
| d1wxqa2 | 76 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 99.4 | |
| d1tkea1 | 62 | Threonyl-tRNA synthetase (ThrRS), N-terminal 'addi | 99.35 | |
| d1nyra2 | 59 | Threonyl-tRNA synthetase (ThrRS), N-terminal 'addi | 99.23 | |
| d1y7pa2 | 77 | Hypothetical protein AF1403, N-terminal domain {Ar | 98.99 | |
| d2fgca2 | 78 | Acetolactate synthase small subunit, IlvH {Thermot | 98.38 | |
| d2pc6a2 | 77 | Acetolactate synthase small subunit, IlvH {Nitroso | 98.37 | |
| d2f1fa1 | 76 | Acetolactate synthase small subunit, IlvH {Escheri | 98.35 | |
| d1sc6a3 | 84 | Phosphoglycerate dehydrogenase, regulatory (C-term | 98.3 | |
| d1ygya3 | 78 | Phosphoglycerate dehydrogenase, regulatory (C-term | 98.16 | |
| d1u8sa2 | 93 | putative transcriptional repressor VC2159 {Vibrio | 97.85 | |
| d1zpva1 | 83 | UPF0237 protein SP0238 {Streptococcus pneumoniae [ | 97.72 | |
| d1u8sa1 | 86 | putative transcriptional repressor VC2159 {Vibrio | 97.63 | |
| d2f06a2 | 70 | Hypothetical protein BT0572 {Bacteroides thetaiota | 97.11 | |
| d2f06a1 | 71 | Hypothetical protein BT0572 {Bacteroides thetaiota | 96.84 | |
| d1phza1 | 97 | Phenylalanine hydroxylase N-terminal domain {Rat ( | 96.07 | |
| d2qmwa2 | 80 | Prephenate dehydratase C-terminal domain {Staphylo | 96.06 | |
| d1zud21 | 65 | Thiamin biosynthesis sulfur carrier protein ThiS { | 95.52 | |
| d2hj1a1 | 77 | Hypothetical protein HI0395 {Haemophilus influenza | 94.16 | |
| d1tygb_ | 65 | Thiamin biosynthesis sulfur carrier protein ThiS { | 93.23 | |
| d1rwsa_ | 68 | Hypothetical protein PF1061 {Archaeon Pyrococcus f | 92.38 | |
| d1vjka_ | 88 | Molybdopterin synthase subunit MoaD {Pyrococcus fu | 92.26 | |
| d2cu3a1 | 63 | Uncharacterised protein TTHA0675 {Thermus thermoph | 91.69 | |
| d1jala2 | 85 | YchF GTP-binding protein, C-terminal domain {Haemo | 90.86 | |
| d1ni3a2 | 82 | YchF GTP-binding protein, C-terminal domain {Fissi | 89.71 | |
| d1rwua_ | 87 | Hypothetical protein ybeD {Escherichia coli [TaxId | 85.74 | |
| d3dtoa1 | 212 | Uncharacterized protein BH2835 {Bacillus haloduran | 84.87 | |
| d2hmfa3 | 100 | Aspartokinase {Methanococcus jannaschii [TaxId: 21 | 84.24 | |
| d2hmfa2 | 67 | Aspartokinase {Methanococcus jannaschii [TaxId: 21 | 81.45 | |
| d2cdqa3 | 75 | Aspartokinase {Thale cress (Arabidopsis thaliana) | 80.88 |
| >d1vj7a1 a.211.1.1 (A:5-196) Stringent response-like protein RelA N-terminal domain {Streptococcus equisimilis [TaxId: 119602]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: HD-domain/PDEase-like superfamily: HD-domain/PDEase-like family: HD domain domain: Stringent response-like protein RelA N-terminal domain species: Streptococcus equisimilis [TaxId: 119602]
Probab=100.00 E-value=0 Score=386.63 Aligned_cols=192 Identities=46% Similarity=0.723 Sum_probs=177.5
Q ss_pred CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCC
Q ss_conf 88994789986632103899424999999999999930489766698600069999999987499988999974000112
Q 002745 123 KEDSPERLWEDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVE 202 (885)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~iLa~l~~D~~tI~AALLHDvvE 202 (885)
++++.+++.+.+. .|+++.|.+++.+|+.||.++|.||+|+||+|||+||++||.||+++++|.++++||||||++|
T Consensus 1 ~~~~~e~~l~~~~---~yl~~~d~~~i~~A~~~A~~~H~gq~r~sG~py~~H~~~VA~iL~~~~~d~~~i~AalLhd~~e 77 (192)
T d1vj7a1 1 INLTGEEVVALAA---KYMNETDAAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAVTVACGFLHDVVE 77 (192)
T ss_dssp CCCCHHHHHHHHH---HHSCHHHHHHHHHHHHHHHHHTTTCBCTTSCBTTHHHHHHHHHHHHTTCCHHHHHHHHHTTHHH
T ss_pred CCCCHHHHHHHHH---HHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHEECHHH
T ss_conf 9998999999999---8699988999999999999997588566759999999999998777058747763210214163
Q ss_pred CCCCCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHCC
Q ss_conf 58889988999885999999996410123345322235773045443899999998434784188221444785322104
Q 002745 203 DTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLS 282 (885)
Q Consensus 203 Dt~~~T~eeI~~~FG~~Va~LV~gvTki~~l~~~~~~~~~~~~~~~qae~lRkmLlam~~D~RviLIKLADRLhNmrtL~ 282 (885)
||+ +|.++|++.||++|+.+|++||++..+... .....+++++|+|+++|++|+||++|||||||||||++.
T Consensus 78 dt~-~t~e~I~~~FG~~Va~lV~~ltk~~~~~~~-------~~~~~~ae~~rkmlla~~~d~rvvlIKLADRLhnlrtl~ 149 (192)
T d1vj7a1 78 DTD-ITLDNIEFDFGKDVRDIVDGVTKLGKVEYK-------SHEEQLAENHRKMLMAMSKDIRVILVKLADRLHNMRTLK 149 (192)
T ss_dssp HSS-CCHHHHHHHHCHHHHHHHHHHHHHC---------------------CCSCTTTSCCCHHHHHHHHHHHHHHHHTCC
T ss_pred HCH-HHHHHHHHHCCHHHHHHHHHHHHHCCCCCC-------CCCHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCC
T ss_conf 020-588888875134579999988864212111-------202278999999987643695043047999986552413
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCC
Q ss_conf 8999733568999998788899775159799998500001219
Q 002745 283 HMPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTN 325 (885)
Q Consensus 283 ~~~~~kq~~iA~Etl~iYaPLA~rLGi~~ik~ELEDL~f~~l~ 325 (885)
..|+++++++|+||+++|+|||+|||+|++|||||||||+|||
T Consensus 150 ~~~~~k~~~~a~Et~~iyaplA~rLG~~~ik~eLEdl~f~~L~ 192 (192)
T d1vj7a1 150 HLRKDKQERISRETMEIYAPLAHRLGISRIKWELEDLAFRYLN 192 (192)
T ss_dssp ------HHHHHHHHHHTHHHHHHHTTCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
T ss_conf 3986899999999999999999986828999999999998629
|
| >d1vj7a2 d.218.1.8 (A:197-371) Stringent response-like protein RelA domain 2 {Streptococcus equisimilis [TaxId: 119602]} | Back information, alignment and structure |
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| >d2be3a1 d.218.1.8 (A:1-203) Putative GTP pyrophosphokinase SP1097 {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
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| >d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
| >d1tkea1 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1nyra2 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
| >d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
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| >d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]} | Back information, alignment and structure |
|---|
| >d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
| >d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
| >d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
| >d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
| >d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
| >d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
| >d1zud21 d.15.3.2 (2:2-66) Thiamin biosynthesis sulfur carrier protein ThiS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2hj1a1 d.15.3.4 (A:11-87) Hypothetical protein HI0395 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
| >d1tygb_ d.15.3.2 (B:) Thiamin biosynthesis sulfur carrier protein ThiS {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1rwsa_ d.15.3.2 (A:) Hypothetical protein PF1061 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1vjka_ d.15.3.1 (A:) Molybdopterin synthase subunit MoaD {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d2cu3a1 d.15.3.2 (A:1-63) Uncharacterised protein TTHA0675 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1jala2 d.15.10.2 (A:279-363) YchF GTP-binding protein, C-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
| >d1ni3a2 d.15.10.2 (A:307-388) YchF GTP-binding protein, C-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
| >d1rwua_ d.58.54.1 (A:) Hypothetical protein ybeD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d3dtoa1 a.211.1.1 (A:2-213) Uncharacterized protein BH2835 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
| >d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
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| >d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d2cdqa3 d.58.18.10 (A:420-494) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|