Citrus Sinensis ID: 002753

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880----
MYMAYGWPQVIPLEQGLCPSSQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTAKSHPAAMRFIPDQVPRECSLNNHVSTSSDMLAREPARCLILRANGELSLLDLDDGRERELTDSVELFWVTCGQLEEKTSLIEEVSWLDYGYRGMQVWYPSPGVDPYKQEDFLQLDPELEFDREVYPLGLLPNAGVVVGVSQRMSFSACTEFPCFEPTPQAQTILHCLLRHLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFSLLEKTCNFIRNFPEYLNVVVSVARKTDGRHWADLFSAAGRSTEYTFYLHLLIYFLPHF
cccccccccEEEccccccccccEEEEEEEcccEEEEEcccEEEEEEccccEEEEEEEEcccHHHHccccEEEEEEcccccEEEEEEcccEEEEEEEEEcccEEEEcccccccccEEEEEccccccccccccccEEEEEEEcccEEEEEEEcccEEEEEcccccccEEEEEEccccccccEEEEcccccccEEEcccccEEEcccccccccEEEEEEcccccEEEEEccccEEEEEEEcccccccccEEEEEEcccccccEEEEEcccccEEEEEEcccEEEEEEccccccEEEEEEEccccccccccccEEEEEEcccccEEEEEEccccEEEEEEccccEEEcccccccccccccccccccccccccccccccEEEEcccccEEEEEEcccccEEEEEEcccccccccccccccEEEEEEcccEEEEEEcccccccEEEEEccccccccccccEEEEEEcccccEEEEEccccEEEEEEccccEEEEcccccEEEEEEEEEEEcccEEEEEEEEcccccEEEEEcccccccccccEEEEEcccccEEEEccccEEEEEEcccEEEEEEEEEEccccccccccEEEEEEEEEEEEcccccccEEEEcccccccccccccccccccccccccccEEEEEEccccccccccccccEEEEcccccEEEEEccccccccccccEEEEEEEcccccEEEcccccccccccccccccccccccccccEEEEEEccccEEEEEEEEEEEEcccccccEEEcccccccHHHHHHHHHHcccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHcccHHHHHHHHcccccccccHHHHHHHHcccHHHHHHHHHHHHHcccc
cccccccccEcccccccccccEEEEEEccccEEEEEEEccEEEEEEccccEEEEEEEEEcHHHHHHccccEEEEEcccccEEEEEEcccEEEEEEEEEcccccccccccccccccccccccccEEEEcccccEEEEEEEccccEEEEEEccccEEEEEEcccccccEEEEEEEccccHHHccccccccccEEEcccccccccccccccccEEEEEEcccccEEEEEEcccEEEEEEccccccccHHccccccccccccEEEEEEcccEEEEEEEccccEEEEEEEccccccccEEEEccccccccccccEEEEEEcccccEEEEEEccccEEEEEEcccccHcccccccccccccccccccccccccHHHcccEEEEEccccEEEEEEcccccccEEEEEEEEcccccccccccccEEEEEcccEEEEEEcccccccccEEEEccHHHHHccccEEEEEEcccccEEEEEccccEEEEEcccccEEEEccHHHHHHHHcccEEEEccEEEEEEEEEccccEEEEEEEccccccccEEEEEEccccEEEEEEcccEEEEEEcccEEEEEEEEEccccccccccEEEEEEEEEEEEccccccccEEEEEccccccccccccccccccccccccccEEEEEEEccEEEEEEcccccHHHHHHcEEEEEEcccccccccccHHHHHEEEccccccEEEEccccccccccccHccccccccccccEcEEEEEcccEEEEEEccccEEEccccccEEEcccccHHHHHHHHHHHHHHccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccc
mymaygwpqvipleqglcpssqqIIYFKVnngllliaspchielwsssqhkvrlgkykrdsesvqregenlqavwspdtKLIAVVTSSLYLHIFKVQITEksiqiggkqpsgLFFIKISLVLneqlpfaekglsvsnivsdnkhmllglsdgslysisWKGEFYGAFELVhssndssvaalshhfpsnglasvdtsgafvsdhkfpiSSAIIWLELCLPMRLLFVLysngqlmscsvskkgLKLAEFIKIDkelgsgdavcasiapeqQILAVGTRRGVVELYDLAESASLIRTVSlydwgysmddtgpvsciawtpdnsafavgwksrgltvwsvSGCRLMSTIRQISlssisspivkpnqdckyeplmsgtsmmqwdeyGYRLYAIEEGSSERVLIFSFGKcclnrgvsgmtyaRQVIYGEDrllvvqsedtdelkilhlnlpvsyisqnwpvqhvaasKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNyidssntyellfypryhldqssLLCRKSllakpivmdvYEDYILvtyrpfdvHIFHVKlfgeltpsttpdlqlsTVRELSIMTakshpaamrfipdqvprecslnnhvstssdmlarEPARCLILRAngelslldlddgrereltDSVELFWVTCgqleektslieevswldygyrgmqvwypspgvdpykqedflqldpelefdrevyplgllpnagvVVGVsqrmsfsactefpcfeptpqAQTILHCLLRHLLQRDKIEEALRLAQLsaekphfsHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFSLLEKTCNFIRNFPEYLNVVVSVARKTDGRHWADLFSAAGRSTEYTFYLHLLIYFLPHF
MYMAYGWPQVIPLEQGLCPSSQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYkrdsesvqregenlqavwspdtKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISlssisspivkpnqdCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKiqskgllwlGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFgeltpsttpdlqLSTVRELSIMTAKSHPAAMRFIPDQVPRECSLNNHVSTSSDMLAREPARCLILRANGELSLLDLDDGRERELTDSVELFWvtcgqleektsliEEVSWLDYGYRGMQVWYPSPGVDPYKQEDFLQLDPELEFDREVYPLGLLPNAGVVVGVSQRMSFSACTEFPCFEPTPQAQTILHCLLRHLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFSLLEKTCNFIRNFPEYLNVVVSVARKTDGRHWADLFsaagrsteYTFYLHLLIYFLPHF
MYMAYGWPQVIPLEQGLCPSSQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTAKSHPAAMRFIPDQVPRECSLNNHVSTSSDMLAREPARCLILRANgelslldlddgrerelTDSVELFWVTCGQLEEKTSLIEEVSWLDYGYRGMQVWYPSPGVDPYKQEDFLQLDPELEFDREVYPLGLLPNAGVVVGVSQRMSFSACTEFPCFEPTPQAQTILHCLLRHLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFSLLEKTCNFIRNFPEYLNVVVSVARKTDGRHWADLFSAAGRSTEYTFYLHLLIYFLPHF
**MAYGWPQVIPLEQGLCPSSQQIIYFKVNNGLLLIASPCHIELWSSSQHKV******************LQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSS****VAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIM**********FI************************PARCLILRANGELSLLDLDDGRERELTDSVELFWVTCGQLEEKTSLIEEVSWLDYGYRGMQVWYPSPGVDPYKQEDFLQLDPELEFDREVYPLGLLPNAGVVVGVSQRMSFSACTEFPCFEPTPQAQTILHCLLRHLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFSLLEKTCNFIRNFPEYLNVVVSVARKTDGRHWADLFSAAGRSTEYTFYLHLLIYFLP**
MYMAYGWPQVIPL*****P****IIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKS****************SLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGE********LQLSTVRELSIMTAKSHPAAMRFIPDQVPREC******STSSDMLAREPARCLILRANGELSLLDLDDGRERELTDSVELFWVTCGQLEEKTSLIEEVSWLDYGYRGMQVWYPSPG***************LEFDREVYPLGLLPNAGVVVGVSQRMSFSACTEFPCFEPTPQAQTILHCLLRHLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEI***********************KTCNFIRNFPEYLNVVVSVARKTDGRHWADLFSAAGRSTEYTFYLHLLIYFLPHF
MYMAYGWPQVIPLEQGLCPSSQQIIYFKVNNGLLLIASPCHIELWSSS**********************LQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTAKSHPAAMRFIPDQVPRECSLNNHVSTSSDMLAREPARCLILRANGELSLLDLDDGRERELTDSVELFWVTCGQLEEKTSLIEEVSWLDYGYRGMQVWYPSPGVDPYKQEDFLQLDPELEFDREVYPLGLLPNAGVVVGVSQRMSFSACTEFPCFEPTPQAQTILHCLLRHLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFSLLEKTCNFIRNFPEYLNVVVSVARKTDGRHWADLFSAAGRSTEYTFYLHLLIYFLPHF
MYMAYGWPQVIPLEQGLCPSSQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTAKSHPAAMRFIPDQVPRECSLN***STSSDMLAREPARCLILRANGELSLLDLDDGRERELTDSVELFWVTCGQLEEKTSLIEEVSWLDYGYRGMQVWYPSPGVDPYKQEDFLQLDPELEFDREVYPLGLLPNAGVVVGVSQRMSFSACTEFPCFEPTPQAQTILHCLLRHLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISR************RAASFSLLEKTCNFIRNFPEYLNVVVSVARKTDGRHWADLFSAAGRSTEYTFYLHLLIYFLPHF
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MYMAYGWPQVIPLEQGLCPSSQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTAKSHPAAMRFIPDQVPRECSLNNHVSTSSDMLAREPARCLILRANGELSLLDLDDGRERELTDSVELFWVTCGQLEEKTSLIEEVSWLDYGYRGMQVWYPSPGVDPYKQEDFLQLDPELEFDREVYPLGLLPNAGVVVGVSQRMSFSACTEFPCFEPTPQAQTILHCLLRHLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFSLLEKTCNFIRNFPEYLNVVVSVARKTDGRHWADLFSAAGRSTEYTFYLHLLIYFLPHF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query884 2.2.26 [Sep-21-2011]
Q69ZJ7 1422 Protein RIC1 homolog OS=M yes no 0.914 0.568 0.254 4e-55
Q4ADV7 1423 Protein RIC1 homolog OS=H no no 0.914 0.567 0.249 1e-53
Q9V3C5 1429 Protein RIC1 homolog OS=D yes no 0.906 0.560 0.233 5e-41
O42656 1052 Protein ric1 OS=Schizosac yes no 0.384 0.323 0.25 9e-13
Q09417 1470 Protein RIC1 homolog OS=C yes no 0.203 0.122 0.282 2e-11
>sp|Q69ZJ7|RIC1_MOUSE Protein RIC1 homolog OS=Mus musculus GN=Kiaa1432 PE=2 SV=2 Back     alignment and function desciption
 Score =  217 bits (552), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 249/977 (25%), Positives = 398/977 (40%), Gaps = 169/977 (17%)

Query: 1   MYMAYGWPQVIPLEQGLC-PSSQQIIYFKVNN----GLLLIASPCHIELWSSSQHKVRLG 55
           MY   GWP+ +     LC P S       V +        + +P  + +W S +  V + 
Sbjct: 1   MYFLSGWPKRL-----LCAPRSPAEAPLHVQSDPRRAFFAVLAPARLSIWYS-RPSVLIV 54

Query: 56  KYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQ-------ITEKSIQIGGK 108
            YK  ++S  + G   QA W PD+ +IAV T++ Y+  F +        + E     G  
Sbjct: 55  TYKEPAKSSTQFGSYKQAEWRPDSTMIAVSTANGYILFFHITSSRGDKYLYEPVYPKGSP 114

Query: 109 QPSGLFFIK-------ISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKG 161
           Q  G+   K       ++L + + L      +S+ +++ D   +L+  SDG L+ I W+G
Sbjct: 115 QMKGIPHFKEEHCAPALNLEMKKILDLQAPIMSLQSVLED---LLVATSDGLLHLIHWEG 171

Query: 162 EFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR 221
              G   +  S+   SV   S              G+F+      I      +E C  + 
Sbjct: 172 MTNGRKAINLSTVPFSVDLQSSRV-----------GSFLGFADVHIKD----MEYCATLD 216

Query: 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVE 281
              V++++G++   +         +   +  +    D  C ++  + +++A G   G V+
Sbjct: 217 GFAVVFNDGKVGFITPVSSRFTAEQLHGVWPQ-DVIDGTCVAVNNKYRLMAFGCASGCVQ 275

Query: 282 LYDLAESAS---LIRTVSLYDWGYS--MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336
           +Y +  +     L   + L    Y    + TG V  I W+PDNSA  V W+  GL++WSV
Sbjct: 276 VYTIDNTTGAMLLSHKLELTAKQYPDIWNKTGAVKLIRWSPDNSAVIVTWEYGGLSLWSV 335

Query: 337 SGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSER- 395
            G +L+ T+               +   K +PL   +  M W   GY L+ I    S+  
Sbjct: 336 FGAQLICTL--------GGDFAYRSDGTKKDPLKINS--MSWGAEGYHLWVISGLGSQHT 385

Query: 396 --------------VLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTD------ 435
                         +L+F F K  L          + ++ GEDRL +   E +       
Sbjct: 386 QIETDLRSTVKEPSILLFQFIKSVLTVNPCMSNQEQVLLQGEDRLYLNCGEASQAQNPKY 445

Query: 436 -----ELKILHLNLPV--------------------------SYISQNWPVQHVAASKDG 464
                E    H   P                           +Y+  NWP++  A  K G
Sbjct: 446 SSARAERMPRHEKSPFADGGLEAPGLSTLLGHRHWHVVQISSTYLESNWPIRFSAIDKLG 505

Query: 465 MFLAVAGLHGLILYDIRQKKWRVFGDITQEQK-IQSKGLLWLGKIIVVCNYIDSSNTYEL 523
             +AVAG  G   Y +  KKW++FG+ITQEQ  I + GL W    +V+  Y  S    EL
Sbjct: 506 QNIAVAGKFGFAHYSLLTKKWKLFGNITQEQNMIVTGGLAWWDDFMVLACYNLSDCQEEL 565

Query: 524 LFYPRY-HLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTP 582
             Y R  +LD +     K+ + + +++ V+ D ++V      + ++ ++   + + +TT 
Sbjct: 566 RIYLRTSNLDNAFAHVTKAPM-ETLLLSVFRDMVVVFRADCSICLYSIERKSDGS-NTTA 623

Query: 583 DLQLSTVRELSIMTAKSHPAAMRFIPDQVPRECSLNNHVSTSSDMLAREPARCLILRANG 642
            +Q+  ++E+S+     HP     +        S  N +S      AR+ A  ++L   G
Sbjct: 624 SVQV--LQEVSMSRYIPHPF---LVVSVTLTSVSTENGISLKMPQQARD-AESIMLNLAG 677

Query: 643 ELSLLDLDDG----RERE----------------LTDSVELFWVTCGQLEEKTSLIEEVS 682
           +L ++  D      RE++                L  SVE  W TC   ++K  L+E + 
Sbjct: 678 QLIMMQRDRSGPQIREKDSHPNQRKLLPFCPPVVLAQSVENVWTTCRANKQKRHLLEAL- 736

Query: 683 WLDYGYRGMQVWYPSPGVDPYKQEDFLQLDPELEFDREVYPLGLLPNAGVVVGV------ 736
           WL  G  GM+VW P    D  K   FL     L F   +YPL +L    +V+G       
Sbjct: 737 WLSCGGAGMKVWLPLFPRDHRKPHSFLSQRIMLPFHINIYPLAVLFEDALVLGAVNDTLL 796

Query: 737 --------SQRMSFSACTEFPCFEPTPQAQTILHCLLRHLLQRDKIEEALRLAQLSAEKP 788
                   S R        F   E T  +Q  LH +LR LL R+  E+AL LAQ  A  P
Sbjct: 797 YDSLYTRSSAREQLEVLFPFCVVERT--SQIYLHHILRQLLVRNLGEQALLLAQSCAALP 854

Query: 789 HFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFSLLEKTCNFIRNFPEYLNVVVSV 848
           +F H LE +L  V + E +    ++  I  P       LL     FI  FP +L  VV  
Sbjct: 855 YFPHVLELMLHEVLEEEAT----SREPIPDP-------LLPTVAKFITEFPLFLQTVVHC 903

Query: 849 ARKTDGRHWADLFSAAG 865
           ARKT+   W  LF+A G
Sbjct: 904 ARKTEYALWNYLFAAVG 920
Required for phosphorylation and localization of GJA1.
Mus musculus (taxid: 10090)
>sp|Q4ADV7|RIC1_HUMAN Protein RIC1 homolog OS=Homo sapiens GN=KIAA1432 PE=1 SV=2 Back     alignment and function description
>sp|Q9V3C5|RIC1_DROME Protein RIC1 homolog OS=Drosophila melanogaster GN=CG9063 PE=1 SV=1 Back     alignment and function description
>sp|O42656|RIC1_SCHPO Protein ric1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ric1 PE=1 SV=2 Back     alignment and function description
>sp|Q09417|RIC1_CAEEL Protein RIC1 homolog OS=Caenorhabditis elegans GN=R06F6.8 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query884
224064053 1122 predicted protein [Populus trichocarpa] 0.980 0.772 0.831 0.0
255541662 1124 conserved hypothetical protein [Ricinus 0.983 0.773 0.836 0.0
359489664 1126 PREDICTED: protein RIC1 homolog isoform 0.981 0.770 0.827 0.0
297745353 1124 unnamed protein product [Vitis vinifera] 0.979 0.770 0.827 0.0
356568415 1121 PREDICTED: protein RIC1 homolog isoform 0.976 0.769 0.805 0.0
147860649 1122 hypothetical protein VITISV_010293 [Viti 0.967 0.762 0.825 0.0
356531967 1121 PREDICTED: protein RIC1 homolog isoform 0.976 0.769 0.807 0.0
87162909 1123 WD40-like [Medicago truncatula] 0.980 0.772 0.803 0.0
449441620 1135 PREDICTED: protein RIC1 homolog [Cucumis 0.980 0.763 0.774 0.0
357507433 1168 RIC1-like protein [Medicago truncatula] 0.980 0.742 0.783 0.0
>gi|224064053|ref|XP_002301368.1| predicted protein [Populus trichocarpa] gi|222843094|gb|EEE80641.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1506 bits (3899), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 723/869 (83%), Positives = 789/869 (90%), Gaps = 2/869 (0%)

Query: 1   MYMAYGWPQVIPLEQGLCPSSQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRD 60
           MYMAYGWPQVIPLEQGLCPS Q+IIYFKV N L L+ SP  +ELWSSSQHKVRLGKYKRD
Sbjct: 1   MYMAYGWPQVIPLEQGLCPSQQRIIYFKVINRLFLVVSPSRLELWSSSQHKVRLGKYKRD 60

Query: 61  SESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISL 120
           +ES++REGEN+QAVWSPDTKLIA++T+S +LHIFKVQ +EK IQIGGKQPSGLF   I+L
Sbjct: 61  AESLEREGENIQAVWSPDTKLIAILTTSFFLHIFKVQFSEKRIQIGGKQPSGLFLANITL 120

Query: 121 VLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAA 180
           VLNEQ+PFA+K L+VSN VSDNKHMLLGLS+GSLYSISWKGEFYGAFE+   S DSS  +
Sbjct: 121 VLNEQVPFADKELTVSNFVSDNKHMLLGLSNGSLYSISWKGEFYGAFEINPYSRDSSDTS 180

Query: 181 LSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKK 240
           +S H   NG AS   S   VS+H     +AI+ LELCLPMRLLFVLYS+GQL+SCSVSK+
Sbjct: 181 ISPHSLGNGFASGRASSGSVSNHNITRKTAIVQLELCLPMRLLFVLYSDGQLVSCSVSKR 240

Query: 241 GLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300
           GLK  E+IK +K+LGS DAVC S+A +QQILAVGTRRGVVELY+LAESASLIR+VSL DW
Sbjct: 241 GLKQVEYIKPEKKLGSDDAVCTSVASDQQILAVGTRRGVVELYNLAESASLIRSVSLSDW 300

Query: 301 GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP 360
           GYSMD+TGPVSCIAWTPDNSAFAVGWK RGLTVWSVSGCRLMSTIRQI L S+SSP VKP
Sbjct: 301 GYSMDETGPVSCIAWTPDNSAFAVGWKLRGLTVWSVSGCRLMSTIRQIGL-SLSSPKVKP 359

Query: 361 NQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVI 420
           NQ+CKYE LM+GTS+MQWDEYGY+LY IEE S ERV+ FSFGKCCL+RGVSGMTY RQVI
Sbjct: 360 NQECKYEALMNGTSLMQWDEYGYKLYVIEEESLERVIAFSFGKCCLSRGVSGMTYVRQVI 419

Query: 421 YGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDI 480
           YGEDRLLVVQSEDTDEL+ILHLNLPVSYISQNWPVQHVAASKDGM LAVAGLHGLILYDI
Sbjct: 420 YGEDRLLVVQSEDTDELRILHLNLPVSYISQNWPVQHVAASKDGMHLAVAGLHGLILYDI 479

Query: 481 RQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRK 540
           + KKWRVFGDITQEQKIQ KGLLWLGKI+VVCNYIDSSNTYELLFYPRYHLDQSSLLCRK
Sbjct: 480 QLKKWRVFGDITQEQKIQCKGLLWLGKIVVVCNYIDSSNTYELLFYPRYHLDQSSLLCRK 539

Query: 541 SLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTAKSH 600
            LLAKP+VMDVY+D+ILVTYRPFDVHIFHV+L GELTPS+TPDLQLSTVRELSIMTAKSH
Sbjct: 540 PLLAKPMVMDVYQDHILVTYRPFDVHIFHVRLLGELTPSSTPDLQLSTVRELSIMTAKSH 599

Query: 601 PAAMRFIPDQVPRECSLNNHVSTSSDMLAREPARCLILRANGELSLLDLDDGRERELTDS 660
           PAAMRFIPD++PRE + +NH+S SS+ L  EPARCLILR NGELSLLDLDDG ERELTDS
Sbjct: 600 PAAMRFIPDRLPRELASDNHIS-SSEFLDTEPARCLILRTNGELSLLDLDDGHERELTDS 658

Query: 661 VELFWVTCGQLEEKTSLIEEVSWLDYGYRGMQVWYPSPGVDPYKQEDFLQLDPELEFDRE 720
           VELFWVTCGQ EEK SLIEEVSWLDYG+RGMQVWYP PG DP+KQEDFLQLDPELEFDRE
Sbjct: 659 VELFWVTCGQSEEKASLIEEVSWLDYGHRGMQVWYPCPGADPFKQEDFLQLDPELEFDRE 718

Query: 721 VYPLGLLPNAGVVVGVSQRMSFSACTEFPCFEPTPQAQTILHCLLRHLLQRDKIEEALRL 780
           VYPLGLLPNAG+VVGVSQRMSFSACTEFPCFEP+PQAQTILHCLLRHLLQRDK EEALRL
Sbjct: 719 VYPLGLLPNAGLVVGVSQRMSFSACTEFPCFEPSPQAQTILHCLLRHLLQRDKTEEALRL 778

Query: 781 AQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFSLLEKTCNFIRNFPE 840
           AQLSAEKPHFSHCLE LLFTVFDAEISRQN+ KNQ+S+PK A + SLLEKTC+ IRNF E
Sbjct: 779 AQLSAEKPHFSHCLELLLFTVFDAEISRQNVIKNQVSVPKHAGNCSLLEKTCDLIRNFSE 838

Query: 841 YLNVVVSVARKTDGRHWADLFSAAGRSTE 869
           YL+VVVSVARKTDGR+WADLFSAAGRSTE
Sbjct: 839 YLDVVVSVARKTDGRYWADLFSAAGRSTE 867

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255541662|ref|XP_002511895.1| conserved hypothetical protein [Ricinus communis] gi|223549075|gb|EEF50564.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|359489664|ref|XP_003633961.1| PREDICTED: protein RIC1 homolog isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297745353|emb|CBI40433.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356568415|ref|XP_003552406.1| PREDICTED: protein RIC1 homolog isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|147860649|emb|CAN81454.1| hypothetical protein VITISV_010293 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356531967|ref|XP_003534547.1| PREDICTED: protein RIC1 homolog isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|87162909|gb|ABD28704.1| WD40-like [Medicago truncatula] Back     alignment and taxonomy information
>gi|449441620|ref|XP_004138580.1| PREDICTED: protein RIC1 homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|357507433|ref|XP_003624005.1| RIC1-like protein [Medicago truncatula] gi|355499020|gb|AES80223.1| RIC1-like protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query884
TAIR|locus:2146589 1127 AT5G28350 "AT5G28350" [Arabido 0.979 0.768 0.725 0.0
FB|FBgn0028500 1429 Rich "RIC1 homolog" [Drosophil 0.452 0.279 0.279 1.8e-41
MGI|MGI:1924893 1422 C030046E11Rik "RIKEN cDNA C030 0.501 0.311 0.244 6.2e-16
UNIPROTKB|Q4ADV7 1423 KIAA1432 "Protein RIC1 homolog 0.321 0.199 0.269 6.2e-33
UNIPROTKB|G4MP37 1118 MGG_05699 "Uncharacterized pro 0.201 0.159 0.310 1.3e-27
ASPGD|ASPL0000058751 1048 AN1283 [Emericella nidulans (t 0.386 0.326 0.250 7.2e-27
WB|WBGene00011071 1470 R06F6.8 [Caenorhabditis elegan 0.203 0.122 0.282 6.1e-23
POMBASE|SPAC1851.04c 1052 ric1 "Ypt/Rab-specific guanyl- 0.403 0.339 0.248 1.9e-14
TAIR|locus:2146589 AT5G28350 "AT5G28350" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3293 (1164.3 bits), Expect = 0., P = 0.
 Identities = 630/868 (72%), Positives = 717/868 (82%)

Query:     1 MYMAYGWPQVIPLEQGLCPSSQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRD 60
             MYMAYGWPQVIPL  G CPSSQ+++Y K+   LLL+ SP H+ELW SSQ +VRLGKY RD
Sbjct:     1 MYMAYGWPQVIPLLPGSCPSSQRVVYLKLAGRLLLVVSPSHLELWGSSQQRVRLGKYMRD 60

Query:    61 SESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISL 120
              +SV+ EGENLQAVWSPD KLIAV+TSS +LHI+K++ T+K ++ G +QPS L F  ISL
Sbjct:    61 DKSVREEGENLQAVWSPDAKLIAVLTSSFFLHIYKIKFTDKRVKPGERQPSELCFATISL 120

Query:   121 VLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAA 180
             +L+EQ+PFA K LSVSN V D+K MLLGLSDGSLYSISWKGEF GAF +    +DS+   
Sbjct:   121 LLSEQVPFAGKDLSVSNFVRDSKTMLLGLSDGSLYSISWKGEFGGAFSIGSHPSDSNDDR 180

Query:   181 LSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKK 240
             L  +   NGL S   S    SD KF  + AI+ LELC   +LLFVL S+GQL+ CSV+KK
Sbjct:   181 LLSYTLGNGLVSGVASPTLASDDKFSTNPAIVQLELCTRSKLLFVLNSDGQLVVCSVNKK 240

Query:   241 GLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300
             GLK  E I+ +K++G GDAVCAS+A EQQILAVGTR+G+VELYDL+ S SL+RTVSL+DW
Sbjct:   241 GLKYTESIRAEKKVG-GDAVCASVASEQQILAVGTRKGMVELYDLSHSISLLRTVSLHDW 299

Query:   301 GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP 360
             GYS D TGPV+ IAWTPDNSAFAVGWKSRGL VWSVSGCRLMST+RQI L+S SSP + P
Sbjct:   300 GYSADYTGPVNNIAWTPDNSAFAVGWKSRGLAVWSVSGCRLMSTVRQIGLTSTSSPKINP 359

Query:   361 NQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVI 420
              QDCKYEPLMSGTS +QWDEYGYRL+A EE S +R+L FSFGKCCLNRGVSG TY RQV+
Sbjct:   360 KQDCKYEPLMSGTSAIQWDEYGYRLFATEEASYDRILAFSFGKCCLNRGVSGKTYVRQVM 419

Query:   421 YGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDI 480
             YG+DRLL+VQ+EDTDELK+LHL LPVSYISQNWPVQHVAAS+DG +LA AGLHGLILYDI
Sbjct:   420 YGDDRLLMVQAEDTDELKLLHLKLPVSYISQNWPVQHVAASEDGKYLAFAGLHGLILYDI 479

Query:   481 RQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRK 540
             R KKWRVFGD++QEQ+I  KGLLWLGKI+V+CNYI++S TYELLFYPRYHLDQSSLLCRK
Sbjct:   480 RFKKWRVFGDVSQEQQIHCKGLLWLGKIVVICNYIEASETYELLFYPRYHLDQSSLLCRK 539

Query:   541 SLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTAKSH 600
              LL KP+VMDVY+DYILV+Y PF +H++HVK++GELTPS+  DLQLSTVRELSIMTAKSH
Sbjct:   540 VLLGKPMVMDVYQDYILVSYLPFFIHVYHVKIYGELTPSSKADLQLSTVRELSIMTAKSH 599

Query:   601 PAAMRFIPDQVPRECSLNNHVSTSSDMLAREPARCLILRANXXXXXXXXXXXXXXXXTDS 660
             PAAM F+PDQ  RE  L+N  + SSD+  REP+RCLILR N                TDS
Sbjct:   600 PAAMGFVPDQHLREGELDND-NLSSDLSDREPSRCLILRGNGELSLLDLVDGRERELTDS 658

Query:   661 VELFWVTCGQLEEKTSLIEEVSWLDYGYRGMQVWYPSPGVDPYKQEDFLQLDPELEFDRE 720
             VELFWVTCGQ EEKT+L+EEVSWLDYG+RGMQVWYPS G DP+ QEDFLQLDPELEFDRE
Sbjct:   659 VELFWVTCGQSEEKTNLVEEVSWLDYGHRGMQVWYPSLGDDPFMQEDFLQLDPELEFDRE 718

Query:   721 VYPLGLLPNAGVVVGVSQRMSFSACTEFPCFEPTPQAQTILHCLLRHLLQRDKIEEALRL 780
             VYPLGLLPN GVVVGVSQRMSFSA  EF CFEPTPQAQTILHCLLRHLLQRDK EEAL L
Sbjct:   719 VYPLGLLPNVGVVVGVSQRMSFSASAEFACFEPTPQAQTILHCLLRHLLQRDKNEEALLL 778

Query:   781 AQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFSLLEKTCNFIRNFPE 840
             AQLSAEKPHFSHCLEWLLFTVFDAEISR N N+NQIS P      SLL K C+ I+ FPE
Sbjct:   779 AQLSAEKPHFSHCLEWLLFTVFDAEISRPNPNRNQISGPGHLKKLSLLRKACDLIKKFPE 838

Query:   841 YLNVVVSVARKTDGRHWADLFSAAGRST 868
             Y +VVV+VARKTD RHWADLFSAAG ST
Sbjct:   839 YYDVVVNVARKTDARHWADLFSAAGIST 866
GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0009507 "chloroplast" evidence=ISM
GO:0005794 "Golgi apparatus" evidence=IDA
FB|FBgn0028500 Rich "RIC1 homolog" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
MGI|MGI:1924893 C030046E11Rik "RIKEN cDNA C030046E11 gene" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q4ADV7 KIAA1432 "Protein RIC1 homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|G4MP37 MGG_05699 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
ASPGD|ASPL0000058751 AN1283 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
WB|WBGene00011071 R06F6.8 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
POMBASE|SPAC1851.04c ric1 "Ypt/Rab-specific guanyl-nucleotide exchange factor (GEF) subunit Ric1" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query884
pfam07064251 pfam07064, RIC1, RIC1 1e-54
COG2319466 COG2319, COG2319, FOG: WD40 repeat [General functi 2e-06
>gnl|CDD|219284 pfam07064, RIC1, RIC1 Back     alignment and domain information 
 Score =  189 bits (482), Expect = 1e-54
 Identities = 64/193 (33%), Positives = 90/193 (46%), Gaps = 11/193 (5%)

Query: 677 LIEEVSWLDYGYRGMQVWYPSPGVDPYKQEDFLQLDPELEFDREVYPLGLLPNAGVVVGV 736
            + +  WL  G  G+ VW P    D  +   F+     L    + YPL +L N G+V+G 
Sbjct: 1   HLRDSLWLFCGLSGLLVWLPVQPSDAVELPRFVSKRIMLP--LDFYPLSVLLNKGIVLGA 58

Query: 737 SQRMSFSACTEFPCFEPTPQAQTILHCLLRHLLQRDKIEEALRLAQLSAEKPHFSHCLEW 796
                    + FP      +    L  +LRHLL+R+  E+AL LAQ     P+F H LE 
Sbjct: 59  ESESVQRRDSSFPFLRFEIRTHLFLPYILRHLLKRNWGEQALYLAQHMRHLPYFPHVLEL 118

Query: 797 LLFTVFDAEISRQNINKNQISIPKRAASFSLLEKTCNFIRNFPEYLNVVVSVARKTDGRH 856
           LL TV D E+     +  Q S        SLL    +F++ FPE+L++VV   RKT+ R 
Sbjct: 119 LLHTVLDEEVD----SSEQDSPRD-----SLLPAVISFLQEFPEFLDIVVQCTRKTELRL 169

Query: 857 WADLFSAAGRSTE 869
           W  LF   G   +
Sbjct: 170 WRTLFDYLGPPKD 182

RIC1 has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor. Length = 251
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 884
KOG2006 1023 consensus WD40 repeat protein [General function pr 100.0
PF07064258 RIC1: RIC1; InterPro: IPR009771 This entry represe 100.0
KOG0291893 consensus WD40-repeat-containing subunit of the 18 100.0
KOG0271480 consensus Notchless-like WD40 repeat-containing pr 100.0
KOG0271480 consensus Notchless-like WD40 repeat-containing pr 100.0
KOG0272459 consensus U4/U6 small nuclear ribonucleoprotein Pr 99.98
KOG0318603 consensus WD40 repeat stress protein/actin interac 99.97
KOG0291893 consensus WD40-repeat-containing subunit of the 18 99.97
KOG0318603 consensus WD40 repeat stress protein/actin interac 99.97
KOG0272459 consensus U4/U6 small nuclear ribonucleoprotein Pr 99.96
KOG0319775 consensus WD40-repeat-containing subunit of the 18 99.96
KOG0286343 consensus G-protein beta subunit [General function 99.96
KOG0279315 consensus G protein beta subunit-like protein [Sig 99.94
KOG0306888 consensus WD40-repeat-containing subunit of the 18 99.94
KOG0263707 consensus Transcription initiation factor TFIID, s 99.94
KOG0273524 consensus Beta-transducin family (WD-40 repeat) pr 99.94
KOG0286343 consensus G-protein beta subunit [General function 99.94
KOG0279315 consensus G protein beta subunit-like protein [Sig 99.93
KOG0263707 consensus Transcription initiation factor TFIID, s 99.93
KOG0645312 consensus WD40 repeat protein [General function pr 99.93
KOG0645312 consensus WD40 repeat protein [General function pr 99.93
KOG0319775 consensus WD40-repeat-containing subunit of the 18 99.93
KOG0284464 consensus Polyadenylation factor I complex, subuni 99.93
KOG0284464 consensus Polyadenylation factor I complex, subuni 99.93
KOG0276 794 consensus Vesicle coat complex COPI, beta' subunit 99.93
KOG0306888 consensus WD40-repeat-containing subunit of the 18 99.92
KOG0273524 consensus Beta-transducin family (WD-40 repeat) pr 99.92
KOG0315311 consensus G-protein beta subunit-like protein (con 99.91
KOG0276794 consensus Vesicle coat complex COPI, beta' subunit 99.91
KOG0281499 consensus Beta-TrCP (transducin repeats containing 99.91
KOG0295406 consensus WD40 repeat-containing protein [Function 99.91
KOG0266456 consensus WD40 repeat-containing protein [General 99.9
KOG0266456 consensus WD40 repeat-containing protein [General 99.9
KOG0315311 consensus G-protein beta subunit-like protein (con 99.9
KOG0281499 consensus Beta-TrCP (transducin repeats containing 99.89
KOG0278334 consensus Serine/threonine kinase receptor-associa 99.89
KOG0292 1202 consensus Vesicle coat complex COPI, alpha subunit 99.89
KOG0285460 consensus Pleiotropic regulator 1 [RNA processing 99.89
KOG0285460 consensus Pleiotropic regulator 1 [RNA processing 99.89
KOG0295406 consensus WD40 repeat-containing protein [Function 99.88
KOG0296399 consensus Angio-associated migratory cell protein 99.88
PLN00181793 protein SPA1-RELATED; Provisional 99.88
KOG14081080 consensus WD40 repeat protein [Function unknown] 99.88
PLN00181793 protein SPA1-RELATED; Provisional 99.88
KOG0293519 consensus WD40 repeat-containing protein [Function 99.87
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 99.87
KOG0313423 consensus Microtubule binding protein YTM1 (contai 99.87
KOG0316307 consensus Conserved WD40 repeat-containing protein 99.87
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 99.87
KOG0265338 consensus U5 snRNP-specific protein-like factor an 99.87
KOG0305484 consensus Anaphase promoting complex, Cdc20, Cdh1, 99.86
KOG0265338 consensus U5 snRNP-specific protein-like factor an 99.86
KOG1407313 consensus WD40 repeat protein [Function unknown] 99.86
KOG0293519 consensus WD40 repeat-containing protein [Function 99.86
KOG0296399 consensus Angio-associated migratory cell protein 99.86
KOG0277311 consensus Peroxisomal targeting signal type 2 rece 99.85
KOG0640430 consensus mRNA cleavage stimulating factor complex 99.85
KOG0292 1202 consensus Vesicle coat complex COPI, alpha subunit 99.85
KOG0282503 consensus mRNA splicing factor [Function unknown] 99.85
KOG0275508 consensus Conserved WD40 repeat-containing protein 99.84
KOG0643327 consensus Translation initiation factor 3, subunit 99.84
KOG14081080 consensus WD40 repeat protein [Function unknown] 99.84
KOG2048691 consensus WD40 repeat protein [General function pr 99.83
PTZ00421493 coronin; Provisional 99.83
KOG0283712 consensus WD40 repeat-containing protein [Function 99.83
KOG0641350 consensus WD40 repeat protein [General function pr 99.82
KOG0313423 consensus Microtubule binding protein YTM1 (contai 99.82
KOG2096420 consensus WD40 repeat protein [General function pr 99.82
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 99.81
KOG2096420 consensus WD40 repeat protein [General function pr 99.81
KOG0277311 consensus Peroxisomal targeting signal type 2 rece 99.8
KOG1539910 consensus WD repeat protein [General function pred 99.8
KOG2106626 consensus Uncharacterized conserved protein, conta 99.8
KOG0310487 consensus Conserved WD40 repeat-containing protein 99.8
KOG0275508 consensus Conserved WD40 repeat-containing protein 99.79
KOG0316307 consensus Conserved WD40 repeat-containing protein 99.79
PTZ00420568 coronin; Provisional 99.79
KOG0288459 consensus WD40 repeat protein TipD [General functi 99.79
KOG0308735 consensus Conserved WD40 repeat-containing protein 99.79
KOG1407313 consensus WD40 repeat protein [Function unknown] 99.79
KOG1063764 consensus RNA polymerase II elongator complex, sub 99.79
KOG0294362 consensus WD40 repeat-containing protein [Function 99.79
KOG2048691 consensus WD40 repeat protein [General function pr 99.79
KOG0772641 consensus Uncharacterized conserved protein, conta 99.78
KOG0310487 consensus Conserved WD40 repeat-containing protein 99.78
KOG1274 933 consensus WD40 repeat protein [General function pr 99.78
PTZ00421493 coronin; Provisional 99.78
KOG0973 942 consensus Histone transcription regulator HIRA, WD 99.78
KOG0973 942 consensus Histone transcription regulator HIRA, WD 99.78
KOG1446311 consensus Histone H3 (Lys4) methyltransferase comp 99.77
KOG0283712 consensus WD40 repeat-containing protein [Function 99.77
KOG0289506 consensus mRNA splicing factor [General function p 99.77
KOG1063764 consensus RNA polymerase II elongator complex, sub 99.77
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 99.76
KOG0640430 consensus mRNA cleavage stimulating factor complex 99.76
KOG0641350 consensus WD40 repeat protein [General function pr 99.76
KOG0643327 consensus Translation initiation factor 3, subunit 99.76
KOG0282503 consensus mRNA splicing factor [Function unknown] 99.76
KOG0300481 consensus WD40 repeat-containing protein [Function 99.75
KOG1539910 consensus WD repeat protein [General function pred 99.75
PTZ00420568 coronin; Provisional 99.75
KOG0639705 consensus Transducin-like enhancer of split protei 99.74
KOG2919406 consensus Guanine nucleotide-binding protein [Gene 99.72
KOG0647347 consensus mRNA export protein (contains WD40 repea 99.72
KOG0305484 consensus Anaphase promoting complex, Cdc20, Cdh1, 99.72
KOG0299479 consensus U3 snoRNP-associated protein (contains W 99.72
KOG0288459 consensus WD40 repeat protein TipD [General functi 99.72
KOG0301745 consensus Phospholipase A2-activating protein (con 99.71
KOG1446311 consensus Histone H3 (Lys4) methyltransferase comp 99.71
KOG1332299 consensus Vesicle coat complex COPII, subunit SEC1 99.7
KOG0772641 consensus Uncharacterized conserved protein, conta 99.7
KOG0264422 consensus Nucleosome remodeling factor, subunit CA 99.7
KOG0294362 consensus WD40 repeat-containing protein [Function 99.7
KOG0269839 consensus WD40 repeat-containing protein [Function 99.7
KOG1332299 consensus Vesicle coat complex COPII, subunit SEC1 99.7
KOG0308735 consensus Conserved WD40 repeat-containing protein 99.69
KOG0289506 consensus mRNA splicing factor [General function p 99.69
KOG2106626 consensus Uncharacterized conserved protein, conta 99.69
KOG0299479 consensus U3 snoRNP-associated protein (contains W 99.69
KOG1273405 consensus WD40 repeat protein [General function pr 99.68
KOG0278334 consensus Serine/threonine kinase receptor-associa 99.68
KOG0301745 consensus Phospholipase A2-activating protein (con 99.67
KOG0639705 consensus Transducin-like enhancer of split protei 99.67
KOG14451012 consensus Tumor-specific antigen (contains WD repe 99.67
KOG0268433 consensus Sof1-like rRNA processing protein (conta 99.67
KOG1274 933 consensus WD40 repeat protein [General function pr 99.66
KOG0267 825 consensus Microtubule severing protein katanin p80 99.66
KOG0300481 consensus WD40 repeat-containing protein [Function 99.65
KOG0647347 consensus mRNA export protein (contains WD40 repea 99.65
KOG0646476 consensus WD40 repeat protein [General function pr 99.63
KOG0264422 consensus Nucleosome remodeling factor, subunit CA 99.63
KOG4283397 consensus Transcription-coupled repair protein CSA 99.62
KOG0646476 consensus WD40 repeat protein [General function pr 99.62
KOG0650733 consensus WD40 repeat nucleolar protein Bop1, invo 99.62
KOG2055514 consensus WD40 repeat protein [General function pr 99.62
KOG0268433 consensus Sof1-like rRNA processing protein (conta 99.62
KOG0267 825 consensus Microtubule severing protein katanin p80 99.61
KOG1036323 consensus Mitotic spindle checkpoint protein BUB3, 99.61
KOG1036323 consensus Mitotic spindle checkpoint protein BUB3, 99.6
KOG0269 839 consensus WD40 repeat-containing protein [Function 99.59
KOG1034385 consensus Transcriptional repressor EED/ESC/FIE, r 99.59
TIGR03866300 PQQ_ABC_repeats PQQ-dependent catabolism-associate 99.57
KOG2055514 consensus WD40 repeat protein [General function pr 99.56
KOG1273405 consensus WD40 repeat protein [General function pr 99.55
KOG2445361 consensus Nuclear pore complex component (sc Seh1) 99.55
KOG4283397 consensus Transcription-coupled repair protein CSA 99.54
KOG2445361 consensus Nuclear pore complex component (sc Seh1) 99.54
TIGR03866300 PQQ_ABC_repeats PQQ-dependent catabolism-associate 99.53
KOG4378673 consensus Nuclear protein COP1 [Signal transductio 99.51
KOG0270463 consensus WD40 repeat-containing protein [Function 99.47
KOG1524737 consensus WD40 repeat-containing protein CHE-2 [Ge 99.45
KOG0302440 consensus Ribosome Assembly protein [General funct 99.43
KOG0303472 consensus Actin-binding protein Coronin, contains 99.42
KOG4328498 consensus WD40 protein [Function unknown] 99.42
KOG1538 1081 consensus Uncharacterized conserved protein WDR10, 99.41
KOG0650733 consensus WD40 repeat nucleolar protein Bop1, invo 99.4
KOG0321720 consensus WD40 repeat-containing protein L2DTL [Fu 99.4
KOG4328498 consensus WD40 protein [Function unknown] 99.39
KOG0771398 consensus Prolactin regulatory element-binding pro 99.38
KOG1538 1081 consensus Uncharacterized conserved protein WDR10, 99.38
KOG4378673 consensus Nuclear protein COP1 [Signal transductio 99.38
COG2319466 FOG: WD40 repeat [General function prediction only 99.37
KOG0771398 consensus Prolactin regulatory element-binding pro 99.36
KOG0302440 consensus Ribosome Assembly protein [General funct 99.35
PRK11028330 6-phosphogluconolactonase; Provisional 99.35
KOG1009434 consensus Chromatin assembly complex 1 subunit B/C 99.34
KOG0270463 consensus WD40 repeat-containing protein [Function 99.33
KOG0307 1049 consensus Vesicle coat complex COPII, subunit SEC3 99.33
KOG1963792 consensus WD40 repeat protein [General function pr 99.33
KOG1524737 consensus WD40 repeat-containing protein CHE-2 [Ge 99.32
KOG1034385 consensus Transcriptional repressor EED/ESC/FIE, r 99.32
KOG0644 1113 consensus Uncharacterized conserved protein, conta 99.31
KOG0649325 consensus WD40 repeat protein [General function pr 99.31
KOG0322323 consensus G-protein beta subunit-like protein GNB1 99.28
KOG15171387 consensus Guanine nucleotide binding protein MIP1 99.28
KOG0307 1049 consensus Vesicle coat complex COPII, subunit SEC3 99.28
KOG0303472 consensus Actin-binding protein Coronin, contains 99.27
KOG2919406 consensus Guanine nucleotide-binding protein [Gene 99.26
KOG1007370 consensus WD repeat protein TSSC1, WD repeat super 99.26
KOG1009434 consensus Chromatin assembly complex 1 subunit B/C 99.25
KOG0321720 consensus WD40 repeat-containing protein L2DTL [Fu 99.25
KOG2110391 consensus Uncharacterized conserved protein, conta 99.25
KOG1007370 consensus WD repeat protein TSSC1, WD repeat super 99.24
KOG12401431 consensus Protein kinase containing WD40 repeats [ 99.23
KOG2394636 consensus WD40 protein DMR-N9 [General function pr 99.21
KOG1963792 consensus WD40 repeat protein [General function pr 99.21
PRK11028330 6-phosphogluconolactonase; Provisional 99.21
PRK01742429 tolB translocation protein TolB; Provisional 99.2
KOG1188376 consensus WD40 repeat protein [General function pr 99.2
KOG2111346 consensus Uncharacterized conserved protein, conta 99.19
KOG0642577 consensus Cell-cycle nuclear protein, contains WD- 99.19
COG2319466 FOG: WD40 repeat [General function prediction only 99.19
PF04762928 IKI3: IKI3 family; InterPro: IPR006849 Members of 99.17
KOG1188376 consensus WD40 repeat protein [General function pr 99.16
KOG1587555 consensus Cytoplasmic dynein intermediate chain [C 99.15
KOG4497447 consensus Uncharacterized conserved protein WDR8, 99.14
KOG4227609 consensus WD40 repeat protein [General function pr 99.11
KOG14451012 consensus Tumor-specific antigen (contains WD repe 99.09
KOG2110391 consensus Uncharacterized conserved protein, conta 99.09
KOG15171387 consensus Guanine nucleotide binding protein MIP1 99.09
KOG0649325 consensus WD40 repeat protein [General function pr 99.09
PRK01742429 tolB translocation protein TolB; Provisional 99.07
KOG0322323 consensus G-protein beta subunit-like protein GNB1 99.06
KOG0290364 consensus Conserved WD40 repeat-containing protein 99.06
KOG4227609 consensus WD40 repeat protein [General function pr 99.0
KOG0644 1113 consensus Uncharacterized conserved protein, conta 98.98
KOG2139445 consensus WD40 repeat protein [General function pr 98.98
PF08662194 eIF2A: Eukaryotic translation initiation factor eI 98.98
KOG1523361 consensus Actin-related protein Arp2/3 complex, su 98.96
KOG2111346 consensus Uncharacterized conserved protein, conta 98.94
KOG1310 758 consensus WD40 repeat protein [General function pr 98.93
PF08662194 eIF2A: Eukaryotic translation initiation factor eI 98.92
KOG2139445 consensus WD40 repeat protein [General function pr 98.91
KOG4497447 consensus Uncharacterized conserved protein WDR8, 98.9
KOG1587555 consensus Cytoplasmic dynein intermediate chain [C 98.88
KOG2394636 consensus WD40 protein DMR-N9 [General function pr 98.88
PRK05137435 tolB translocation protein TolB; Provisional 98.87
PRK03629429 tolB translocation protein TolB; Provisional 98.87
KOG1272545 consensus WD40-repeat-containing subunit of the 18 98.82
KOG0642577 consensus Cell-cycle nuclear protein, contains WD- 98.82
KOG12401431 consensus Protein kinase containing WD40 repeats [ 98.81
KOG0290364 consensus Conserved WD40 repeat-containing protein 98.78
PRK02889427 tolB translocation protein TolB; Provisional 98.78
KOG1523361 consensus Actin-related protein Arp2/3 complex, su 98.77
KOG2321703 consensus WD40 repeat protein [General function pr 98.76
PF02239369 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO 98.76
PF15492282 Nbas_N: Neuroblastoma-amplified sequence, N termin 98.74
KOG2315566 consensus Predicted translation initiation factor 98.73
PRK03629429 tolB translocation protein TolB; Provisional 98.72
PRK04922433 tolB translocation protein TolB; Provisional 98.71
PF04762 928 IKI3: IKI3 family; InterPro: IPR006849 Members of 98.68
KOG1310758 consensus WD40 repeat protein [General function pr 98.66
PRK02889427 tolB translocation protein TolB; Provisional 98.65
KOG2321703 consensus WD40 repeat protein [General function pr 98.57
TIGR02658352 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. 98.56
PF02239369 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO 98.55
COG2706346 3-carboxymuconate cyclase [Carbohydrate transport 98.55
PRK05137435 tolB translocation protein TolB; Provisional 98.55
KOG0974 967 consensus WD-repeat protein WDR6, WD repeat superf 98.55
COG5354561 Uncharacterized protein, contains Trp-Asp (WD) rep 98.54
KOG4547541 consensus WD40 repeat-containing protein [General 98.53
KOG1912 1062 consensus WD40 repeat protein [General function pr 98.53
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 98.53
KOG1354433 consensus Serine/threonine protein phosphatase 2A, 98.53
KOG1272545 consensus WD40-repeat-containing subunit of the 18 98.53
TIGR02800417 propeller_TolB tol-pal system beta propeller repea 98.52
PRK04922433 tolB translocation protein TolB; Provisional 98.51
KOG1354433 consensus Serine/threonine protein phosphatase 2A, 98.5
KOG2041 1189 consensus WD40 repeat protein [General function pr 98.5
KOG4547541 consensus WD40 repeat-containing protein [General 98.46
KOG1334559 consensus WD40 repeat protein [General function pr 98.44
KOG1334559 consensus WD40 repeat protein [General function pr 98.43
KOG0974 967 consensus WD-repeat protein WDR6, WD repeat superf 98.38
COG2706346 3-carboxymuconate cyclase [Carbohydrate transport 98.37
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 98.35
PRK01029428 tolB translocation protein TolB; Provisional 98.35
PRK04792448 tolB translocation protein TolB; Provisional 98.34
PRK01029428 tolB translocation protein TolB; Provisional 98.33
KOG3881412 consensus Uncharacterized conserved protein [Funct 98.33
PRK00178430 tolB translocation protein TolB; Provisional 98.29
KOG2314698 consensus Translation initiation factor 3, subunit 98.29
PF0040039 WD40: WD domain, G-beta repeat; InterPro: IPR01978 98.24
PF15492282 Nbas_N: Neuroblastoma-amplified sequence, N termin 98.21
KOG4532344 consensus WD40-like repeat containing protein [Gen 98.19
TIGR02800417 propeller_TolB tol-pal system beta propeller repea 98.15
KOG3881412 consensus Uncharacterized conserved protein [Funct 98.15
KOG2315566 consensus Predicted translation initiation factor 98.14
KOG2041 1189 consensus WD40 repeat protein [General function pr 98.13
PRK04792448 tolB translocation protein TolB; Provisional 98.11
PRK00178430 tolB translocation protein TolB; Provisional 98.08
COG4946668 Uncharacterized protein related to the periplasmic 98.03
KOG0309 1081 consensus Conserved WD40 repeat-containing protein 98.02
TIGR02658352 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. 97.98
KOG0280339 consensus Uncharacterized conserved protein [Amino 97.97
KOG4532344 consensus WD40-like repeat containing protein [Gen 97.92
KOG1409404 consensus Uncharacterized conserved protein, conta 97.9
KOG10642439 consensus RAVE (regulator of V-ATPase assembly) co 97.89
KOG2314698 consensus Translation initiation factor 3, subunit 97.89
KOG0280339 consensus Uncharacterized conserved protein [Amino 97.88
KOG3914390 consensus WD repeat protein WDR4 [Function unknown 97.87
KOG41901034 consensus Uncharacterized conserved protein [Funct 97.85
PF0040039 WD40: WD domain, G-beta repeat; InterPro: IPR01978 97.81
PRK04043419 tolB translocation protein TolB; Provisional 97.81
PF04841410 Vps16_N: Vps16, N-terminal region; InterPro: IPR00 97.78
KOG10642439 consensus RAVE (regulator of V-ATPase assembly) co 97.77
COG4946668 Uncharacterized protein related to the periplasmic 97.74
PLN029191057 haloacid dehalogenase-like hydrolase family protei 97.74
PF11768545 DUF3312: Protein of unknown function (DUF3312); In 97.72
PF06433342 Me-amine-dh_H: Methylamine dehydrogenase heavy cha 97.7
KOG19121062 consensus WD40 repeat protein [General function pr 97.69
TIGR03300377 assembly_YfgL outer membrane assembly lipoprotein 97.65
PRK04043419 tolB translocation protein TolB; Provisional 97.59
KOG3621726 consensus WD40 repeat-containing protein [General 97.56
PLN029191057 haloacid dehalogenase-like hydrolase family protei 97.5
COG5354561 Uncharacterized protein, contains Trp-Asp (WD) rep 97.49
PF07433305 DUF1513: Protein of unknown function (DUF1513); In 97.47
KOG3914390 consensus WD repeat protein WDR4 [Function unknown 97.46
KOG0309 1081 consensus Conserved WD40 repeat-containing protein 97.36
KOG1409404 consensus Uncharacterized conserved protein, conta 97.35
TIGR03300377 assembly_YfgL outer membrane assembly lipoprotein 97.35
KOG4640665 consensus Anaphase-promoting complex (APC), subuni 97.33
PF04841410 Vps16_N: Vps16, N-terminal region; InterPro: IPR00 97.3
KOG1920 1265 consensus IkappaB kinase complex, IKAP component [ 97.22
COG5170460 CDC55 Serine/threonine protein phosphatase 2A, reg 97.16
KOG2066 846 consensus Vacuolar assembly/sorting protein VPS41 97.12
KOG1645463 consensus RING-finger-containing E3 ubiquitin liga 97.12
KOG4714319 consensus Nucleoporin [Nuclear structure] 97.08
KOG2114 933 consensus Vacuolar assembly/sorting protein PEP5/V 97.06
COG5170460 CDC55 Serine/threonine protein phosphatase 2A, reg 97.05
KOG2695425 consensus WD40 repeat protein [General function pr 97.03
KOG41901034 consensus Uncharacterized conserved protein [Funct 97.02
KOG4714319 consensus Nucleoporin [Nuclear structure] 96.98
KOG1920 1265 consensus IkappaB kinase complex, IKAP component [ 96.97
PF07433305 DUF1513: Protein of unknown function (DUF1513); In 96.89
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 96.83
KOG4640665 consensus Anaphase-promoting complex (APC), subuni 96.83
PF04053443 Coatomer_WDAD: Coatomer WD associated region ; Int 96.77
smart0032040 WD40 WD40 repeats. Note that these repeats are per 96.55
KOG2079 1206 consensus Vacuolar assembly/sorting protein VPS8 [ 96.42
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 96.3
PF00930353 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin 96.17
KOG3617 1416 consensus WD40 and TPR repeat-containing protein [ 96.17
KOG2695425 consensus WD40 repeat protein [General function pr 96.15
KOG3621726 consensus WD40 repeat-containing protein [General 96.01
PF11768545 DUF3312: Protein of unknown function (DUF3312); In 96.01
KOG3617 1416 consensus WD40 and TPR repeat-containing protein [ 95.99
PF14783111 BBS2_Mid: Ciliary BBSome complex subunit 2, middle 95.95
PF00930353 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin 95.92
KOG18321516 consensus HIV-1 Vpr-binding protein [Cell cycle co 95.83
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 95.81
KOG0882558 consensus Cyclophilin-related peptidyl-prolyl cis- 95.8
KOG1275 1118 consensus PAB-dependent poly(A) ribonuclease, subu 95.76
KOG2114 933 consensus Vacuolar assembly/sorting protein PEP5/V 95.65
KOG2066 846 consensus Vacuolar assembly/sorting protein VPS41 95.61
COG3490366 Uncharacterized protein conserved in bacteria [Fun 95.55
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 95.5
KOG4649354 consensus PQQ (pyrrolo-quinoline quinone) repeat p 95.23
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 95.18
PF08596395 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; 95.06
smart0032040 WD40 WD40 repeats. Note that these repeats are per 95.04
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 95.02
KOG18971096 consensus Damage-specific DNA binding complex, sub 94.94
COG0823425 TolB Periplasmic component of the Tol biopolymer t 94.89
KOG1275 1118 consensus PAB-dependent poly(A) ribonuclease, subu 94.79
PF06977248 SdiA-regulated: SdiA-regulated; InterPro: IPR00972 94.77
PF06433342 Me-amine-dh_H: Methylamine dehydrogenase heavy cha 94.76
KOG18321516 consensus HIV-1 Vpr-binding protein [Cell cycle co 94.72
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 94.67
KOG0882558 consensus Cyclophilin-related peptidyl-prolyl cis- 94.51
PF1289447 Apc4_WD40: Anaphase-promoting complex subunit 4 WD 94.47
PF1289447 Apc4_WD40: Anaphase-promoting complex subunit 4 WD 93.57
PF04053443 Coatomer_WDAD: Coatomer WD associated region ; Int 93.19
PF14783111 BBS2_Mid: Ciliary BBSome complex subunit 2, middle 92.58
PF00780275 CNH: CNH domain; InterPro: IPR001180 Based on sequ 92.31
PRK13616591 lipoprotein LpqB; Provisional 92.25
KOG2444238 consensus WD40 repeat protein [General function pr 92.03
KOG2079 1206 consensus Vacuolar assembly/sorting protein VPS8 [ 91.97
KOG18981205 consensus Splicing factor 3b, subunit 3 [RNA proce 91.76
PF08596395 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; 91.74
COG3391381 Uncharacterized conserved protein [Function unknow 91.63
PRK13616591 lipoprotein LpqB; Provisional 91.54
KOG1008 783 consensus Uncharacterized conserved protein, conta 91.37
KOG18971096 consensus Damage-specific DNA binding complex, sub 90.85
PF08553794 VID27: VID27 cytoplasmic protein; InterPro: IPR013 90.56
PF15390671 DUF4613: Domain of unknown function (DUF4613) 89.25
PRK02888635 nitrous-oxide reductase; Validated 88.77
PF10647253 Gmad1: Lipoprotein LpqB beta-propeller domain; Int 88.67
COG0823425 TolB Periplasmic component of the Tol biopolymer t 88.6
KOG3630 1405 consensus Nuclear pore complex, Nup214/CAN compone 88.13
PF02897414 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal 88.02
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 87.75
PF15390671 DUF4613: Domain of unknown function (DUF4613) 87.15
PF1031343 DUF2415: Uncharacterised protein domain (DUF2415); 86.55
COG3204316 Uncharacterized protein conserved in bacteria [Fun 86.18
PF02897414 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal 84.65
PF06977248 SdiA-regulated: SdiA-regulated; InterPro: IPR00972 84.63
KOG2377657 consensus Uncharacterized conserved protein [Funct 84.17
KOG1645463 consensus RING-finger-containing E3 ubiquitin liga 83.34
cd00216488 PQQ_DH Dehydrogenases with pyrrolo-quinoline quino 83.22
PF1031343 DUF2415: Uncharacterised protein domain (DUF2415); 83.18
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 83.08
PF03178321 CPSF_A: CPSF A subunit region; InterPro: IPR004871 82.15
PF12657173 TFIIIC_delta: Transcription factor IIIC subunit de 81.56
>KOG2006 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=3.1e-72  Score=630.58  Aligned_cols=584  Identities=34%  Similarity=0.499  Sum_probs=451.5

Q ss_pred             CCCcEEEEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEe
Q 002753          256 SGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS  335 (884)
Q Consensus       256 h~~~v~va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~  335 (884)
                      -++++|++++..+.++|+|...|.+.+|+.+.............+    +++.++.-+.|.|+++.++.++..|...+|+
T Consensus       148 ~~DAvc~SV~~e~~lla~G~~~g~v~~y~~~~~~ssl~~s~~~~~----~~ti~~~~~~~~p~~~~~av~~~~g~ls~wS  223 (1023)
T KOG2006|consen  148 GGDAVCCSVNHEFQLLAYGTPVGEVLLYSIDEANSSLVFSNRDDD----TLTVPDNNSSWRPDQNGFAVTWEKGFLAFWS  223 (1023)
T ss_pred             cccceeeeccchhhhheecccccceeehhhhhhccceeeecccCc----cccccccccCcCCccceeeeeecccceEEec
Confidence            468999999999999999999999999998763232222222122    2455888899999999999999999999999


Q ss_pred             ccCCeeEEEeccccccceeeeeecCCCCCCccceeecceeEEEecCCceEEEEecCCcceEEEEeecceeecccCCCCce
Q 002753          336 VSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTY  415 (884)
Q Consensus       336 ~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~  415 (884)
                      ..|+..+.+.......+..+..|+|.-......-.+......|...+..++.........+..+.. +....  ..++..
T Consensus       224 ~~g~~~ms~v~~~~~ts~~~~~f~~~~~l~e~~~~s~~~~~q~~e~~~~L~~~~~~~~~~~~~~~s-~sc~~--~S~~~~  300 (1023)
T KOG2006|consen  224 NQGNILMLPVKKLELTSKVVLKFNPLIIMKGEPTFSKVGAIQWEEVGIVLFPHGEQILTISDFKVS-KSCLV--ESKTIV  300 (1023)
T ss_pred             ccccccccchhhhhccchhhhccCcceeeecccccCccchhhccceeeeeecccccccchhheeec-ccccc--ccccee
Confidence            999988776654333445555666654344444555567778887777776554332222211111 11110  122333


Q ss_pred             eeeeeecCCeEEEEecCC---CCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceEEEEccCCcEEEecCcc
Q 002753          416 ARQVIYGEDRLLVVQSED---TDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDIT  492 (884)
Q Consensus       416 ~w~l~~~~~~~~i~~~~~---~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~iiwd~~s~~w~~f~~~~  492 (884)
                      ......++.++.+....+   .+...|.++++|.+|...+|||+.++.++||.++|+||.-|.++|+..+++||.|+++.
T Consensus       301 ~~~~l~~d~~~l~~~~~~~s~~~~~~w~~~~~P~~y~ssnwpiry~s~~~dg~~lavAgl~gla~y~~~~~~Wk~f~~~s  380 (1023)
T KOG2006|consen  301 CRAQLMGDSHDLVSKATDVSITDIEKWDHLALPLTYTSSNWPIRYVSIDYDGKHLAVAGLHGLARYSLSSKRWKLFGDES  380 (1023)
T ss_pred             echhhccchhhhhhhhccccccchhhhheeecccccccccCceeEEeecCCccEEEEeecccceEEEeecceeecCCccc
Confidence            333444455444444333   44558999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeeeEEEE-EEEeCCEEEEEEEecCCCeEEEEEeeCC-CCCCcceEEEEecCCccEEEEccCCEEEEEEcCCeEEEEEE
Q 002753          493 QEQKIQSKG-LLWLGKIIVVCNYIDSSNTYELLFYPRY-HLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHV  570 (884)
Q Consensus       493 ~e~~~~v~~-~~W~~~~lv~~~~~~~~~~~elr~y~~~-~l~~~~~l~~~~~~~~~~~~~~~~~~llv~~~~~~i~i~~~  570 (884)
                      ||+.+.|.| +.|+++++++||+.+.+..+++++|+++ ++|++. .+..........+.+.++.++|++.++.+++|++
T Consensus       381 qEq~i~vtg~liW~~~f~v~~~~~~~~~~~~L~fy~~~~~~dn~~-a~k~~~~~~~~d~v~~~~~livitad~~~~~~~~  459 (1023)
T KOG2006|consen  381 QEQNINVTGGLIWWDDFVVHGCVEEGNRTFELYFYPRDYNLDNNL-AHKSAASAKVSDLVCVDYSLIVITADGKYQHWEL  459 (1023)
T ss_pred             hhhceecceeeEEecceEEEEEEeecCceeeeEecccccccchhh-ccchhhhhhhhheeeecceeEEEEecceEEEEEe
Confidence            999999984 9999999999999999999999999998 676653 3443333334455677888888999999999988


Q ss_pred             EEecccCCCCCCceEEEEEEEEeeecccCCCceEEEccCCCcccccccCCCCCCccccccCCccEEEEEECCEEEEEecC
Q 002753          571 KLFGELTPSTTPDLQLSTVRELSIMTAKSHPAAMRFIPDQVPRECSLNNHVSTSSDMLAREPARCLILRANGELSLLDLD  650 (884)
Q Consensus       571 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~l~~~  650 (884)
                      ..+      ....+.+..+++++++.+++||++|+++|++.+++.-... -+|.++       ..+....+|.+.++...
T Consensus       460 ~~~------s~t~l~~~~~~~~~~~~i~thP~~ivs~t~t~~~l~~i~~-~~l~~~-------~~~~~~~~n~i~~l~~~  525 (1023)
T KOG2006|consen  460 WRN------SQTQLDLENVTEVSIVLINTHPACIVSLTVTSPSLANIGN-DNLQFY-------KSITVTFNNLIGRLIIN  525 (1023)
T ss_pred             ccc------hhhccccceeeEEEEEeecCCCcEEEEeeccCccccccCc-cchhHh-------hhhhhhhcchhheeehh
Confidence            643      2456788899999999999999999999999886321111 122222       22344456666666542


Q ss_pred             CC-------ceeeeccceeEEEEcCCCCccccCccceeeEEEECCCC-----cEEeccC--------------CCCCCCC
Q 002753          651 DG-------RERELTDSVELFWVTCGQLEEKTSLIEEVSWLDYGYRG-----MQVWYPS--------------PGVDPYK  704 (884)
Q Consensus       651 ~~-------~~~~l~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~vw~~~--------------~~~~~~~  704 (884)
                      ..       .+..+|++||++|+.+.. ..  ..+.+..|..+|..|     |+.|.+.              .+.+...
T Consensus       526 ~~~~~~~~~~~~~la~~Ve~~~~~ss~-~~--~~~~d~~Wl~~g~~~~~~~~~~g~~~~l~~~~~~~~g~~~~~~~~~~~  602 (1023)
T KOG2006|consen  526 SSLRDGALYQENKLASLVENFWLNSSF-ED--QQVLDLHWLGDGANGCHMKNMDGCPNHLCLALWLSEGNVWDLVMDAYR  602 (1023)
T ss_pred             hhccchhhhhhhhhhhhHHHeecCcHH-hh--hhhhhceeeccCCCccccccccCCccccccceeecccchhhccccccc
Confidence            21       467899999999988322 22  234566788888888     7766443              2345666


Q ss_pred             cccccccCcccccccccccceeccCCcEEEEEeeeeeccc-----CccccccccCCcceeeHHHHHH--HHHHcCCHHHH
Q 002753          705 QEDFLQLDPELEFDREVYPLGLLPNAGVVVGVSQRMSFSA-----CTEFPCFEPTPQAQTILHCLLR--HLLQRDKIEEA  777 (884)
Q Consensus       705 ~~~~~~~~~~l~~~~~~yPl~i~~~~~i~~G~~~~~~~~~-----~~~~~~~~~~~~~~~~L~~il~--~ll~~~~~~~a  777 (884)
                      .++|..+++|++|+++.|||.++++++++.|++|+.....     +..+++.-..++|++|||.+++  |+|+||.+++|
T Consensus       603 ~~sF~~k~~ml~f~l~~Ypl~~l~~~~~~~gv~~~~~l~asa~~~~~~~~f~v~~~~h~~~l~~i~~l~q~lkrnl~~~a  682 (1023)
T KOG2006|consen  603 VPSFLSKRIMLPFTLNIYPLVLLKNVNLVLGVEQEDALLASAEIILFTLTFDVQERLHQIYLHIILHLYQLLKRNLGEDA  682 (1023)
T ss_pred             CchhhhhccccccchhhceeeeecccceeeeccchhhhhhhccccccccchHHhhhhhhhHHHHHHHHHHHHHhhccHHH
Confidence            7889999999999999999999999999999999865432     3355666678899999999999  99999999999


Q ss_pred             HHHHHHcCCCCCchhhHHHHHHHhhhcccccccccccccCCcccccchhhHHHHHHHHHhCchhhhhhhhccccccccch
Q 002753          778 LRLAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFSLLEKTCNFIRNFPEYLNVVVSVARKTDGRHW  857 (884)
Q Consensus       778 ~~~a~~~~~l~~f~h~LE~lLh~vl~~e~~~~~~~~~~~~~~~~~~~~~~l~~v~~~i~~~~~~l~ivv~c~RKtE~~~W  857 (884)
                      +.+|+.|..+|||+|+||+|||.|||+|+++++|      +|+     ++||+++.||++||+|+++|||||||||.++|
T Consensus       683 Lllaq~~a~~p~f~h~le~ll~~Vle~e~ts~~p------~~d-----~~l~~i~d~I~eFp~fl~~vv~caRKTe~~lW  751 (1023)
T KOG2006|consen  683 LLLAQECAILPHFTHALELLLHFVLEEEATSSEP------IPD-----KLLPKIIDFIREFPEFLKTVVNCARKTEAALW  751 (1023)
T ss_pred             HHhHHHHHhcccchHHHHHHHHHHHHHhhcCCCC------ccc-----hhHHHHHHHHHhhhHHHHHHHHHHHHhHHHHH
Confidence            9999999999999999999999999999998865      676     79999999999999999999999999999999


Q ss_pred             hHhHhhcCCchhhHHHhh
Q 002753          858 ADLFSAAGRSTEYTFYLH  875 (884)
Q Consensus       858 ~~lF~~~g~p~~lf~~~~  875 (884)
                      ++||+++|.|++||++|-
T Consensus       752 ~~lF~~~G~PkdLfe~Cl  769 (1023)
T KOG2006|consen  752 PDLFSAVGIPKDLFEECL  769 (1023)
T ss_pred             HHHHHhcCCcHHHHHHHh
Confidence            999999999999999984

>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] Back     alignment and domain information
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0286 consensus G-protein beta subunit [General function prediction only] Back     alignment and domain information
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0286 consensus G-protein beta subunit [General function prediction only] Back     alignment and domain information
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG0645 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0645 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] Back     alignment and domain information
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] Back     alignment and domain information
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>KOG0295 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] Back     alignment and domain information
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] Back     alignment and domain information
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] Back     alignment and domain information
>KOG0295 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] Back     alignment and domain information
>PLN00181 protein SPA1-RELATED; Provisional Back     alignment and domain information
>KOG1408 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>PLN00181 protein SPA1-RELATED; Provisional Back     alignment and domain information
>KOG0293 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] Back     alignment and domain information
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] Back     alignment and domain information
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] Back     alignment and domain information
>KOG1407 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>KOG0293 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] Back     alignment and domain information
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0282 consensus mRNA splicing factor [Function unknown] Back     alignment and domain information
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] Back     alignment and domain information
>KOG1408 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>KOG2048 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PTZ00421 coronin; Provisional Back     alignment and domain information
>KOG0283 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0641 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] Back     alignment and domain information
>KOG2096 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>KOG2096 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1539 consensus WD repeat protein [General function prediction only] Back     alignment and domain information
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] Back     alignment and domain information
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PTZ00420 coronin; Provisional Back     alignment and domain information
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only] Back     alignment and domain information
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG1407 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG0294 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG2048 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] Back     alignment and domain information
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG1274 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PTZ00421 coronin; Provisional Back     alignment and domain information
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0283 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0289 consensus mRNA splicing factor [General function prediction only] Back     alignment and domain information
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG0641 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] Back     alignment and domain information
>KOG0282 consensus mRNA splicing factor [Function unknown] Back     alignment and domain information
>KOG0300 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG1539 consensus WD repeat protein [General function prediction only] Back     alignment and domain information
>PTZ00420 coronin; Provisional Back     alignment and domain information
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] Back     alignment and domain information
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] Back     alignment and domain information
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only] Back     alignment and domain information
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] Back     alignment and domain information
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] Back     alignment and domain information
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0294 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0269 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0289 consensus mRNA splicing factor [General function prediction only] Back     alignment and domain information
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] Back     alignment and domain information
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG1273 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] Back     alignment and domain information
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] Back     alignment and domain information
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] Back     alignment and domain information
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG1274 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0300 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] Back     alignment and domain information
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0269 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] Back     alignment and domain information
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1273 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein Back     alignment and domain information
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG0270 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] Back     alignment and domain information
>KOG0302 consensus Ribosome Assembly protein [General function prediction only] Back     alignment and domain information
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] Back     alignment and domain information
>KOG4328 consensus WD40 protein [Function unknown] Back     alignment and domain information
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] Back     alignment and domain information
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] Back     alignment and domain information
>KOG4328 consensus WD40 protein [Function unknown] Back     alignment and domain information
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] Back     alignment and domain information
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] Back     alignment and domain information
>COG2319 FOG: WD40 repeat [General function prediction only] Back     alignment and domain information
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0302 consensus Ribosome Assembly protein [General function prediction only] Back     alignment and domain information
>PRK11028 6-phosphogluconolactonase; Provisional Back     alignment and domain information
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] Back     alignment and domain information
>KOG0270 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1963 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] Back     alignment and domain information
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] Back     alignment and domain information
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] Back     alignment and domain information
>KOG0649 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] Back     alignment and domain information
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] Back     alignment and domain information
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] Back     alignment and domain information
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] Back     alignment and domain information
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] Back     alignment and domain information
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] Back     alignment and domain information
>KOG1963 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PRK11028 6-phosphogluconolactonase; Provisional Back     alignment and domain information
>PRK01742 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG1188 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG2319 FOG: WD40 repeat [General function prediction only] Back     alignment and domain information
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] Back     alignment and domain information
>KOG1188 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] Back     alignment and domain information
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] Back     alignment and domain information
>KOG4227 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] Back     alignment and domain information
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0649 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PRK01742 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] Back     alignment and domain information
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] Back     alignment and domain information
>KOG4227 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] Back     alignment and domain information
>KOG2139 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins Back     alignment and domain information
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] Back     alignment and domain information
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>KOG1310 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins Back     alignment and domain information
>KOG2139 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] Back     alignment and domain information
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] Back     alignment and domain information
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] Back     alignment and domain information
>PRK05137 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PRK03629 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] Back     alignment and domain information
>PRK02889 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] Back     alignment and domain information
>KOG2321 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A Back     alignment and domain information
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal Back     alignment and domain information
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK03629 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PRK04922 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] Back     alignment and domain information
>KOG1310 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PRK02889 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG2321 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain Back     alignment and domain information
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A Back     alignment and domain information
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK05137 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] Back     alignment and domain information
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] Back     alignment and domain information
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1912 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB Back     alignment and domain information
>PRK04922 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>KOG2041 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1334 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1334 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] Back     alignment and domain information
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>PRK01029 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PRK04792 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PRK01029 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG3881 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK00178 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide Back     alignment and domain information
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal Back     alignment and domain information
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only] Back     alignment and domain information
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB Back     alignment and domain information
>KOG3881 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2041 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PRK04792 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PRK00178 tolB translocation protein TolB; Provisional Back     alignment and domain information
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] Back     alignment and domain information
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain Back     alignment and domain information
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] Back     alignment and domain information
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only] Back     alignment and domain information
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] Back     alignment and domain information
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] Back     alignment and domain information
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] Back     alignment and domain information
>KOG3914 consensus WD repeat protein WDR4 [Function unknown] Back     alignment and domain information
>KOG4190 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide Back     alignment and domain information
>PRK04043 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex Back     alignment and domain information
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] Back     alignment and domain information
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] Back     alignment and domain information
>PLN02919 haloacid dehalogenase-like hydrolase family protein Back     alignment and domain information
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats Back     alignment and domain information
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 Back     alignment and domain information
>KOG1912 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL Back     alignment and domain information
>PRK04043 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>PLN02919 haloacid dehalogenase-like hydrolase family protein Back     alignment and domain information
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] Back     alignment and domain information
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>KOG3914 consensus WD repeat protein WDR4 [Function unknown] Back     alignment and domain information
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] Back     alignment and domain information
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL Back     alignment and domain information
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex Back     alignment and domain information
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] Back     alignment and domain information
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4714 consensus Nucleoporin [Nuclear structure] Back     alignment and domain information
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>KOG2695 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG4190 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4714 consensus Nucleoporin [Nuclear structure] Back     alignment and domain information
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] Back     alignment and domain information
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>smart00320 WD40 WD40 repeats Back     alignment and domain information
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG2695 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats Back     alignment and domain information
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region Back     alignment and domain information
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] Back     alignment and domain information
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals Back     alignment and domain information
>smart00320 WD40 WD40 repeats Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] Back     alignment and domain information
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] Back     alignment and domain information
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] Back     alignment and domain information
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 Back     alignment and domain information
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain Back     alignment and domain information
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain Back     alignment and domain information
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region Back     alignment and domain information
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase Back     alignment and domain information
>PRK13616 lipoprotein LpqB; Provisional Back     alignment and domain information
>KOG2444 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] Back     alignment and domain information
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals Back     alignment and domain information
>COG3391 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK13616 lipoprotein LpqB; Provisional Back     alignment and domain information
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] Back     alignment and domain information
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins Back     alignment and domain information
>PF15390 DUF4613: Domain of unknown function (DUF4613) Back     alignment and domain information
>PRK02888 nitrous-oxide reductase; Validated Back     alignment and domain information
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation Back     alignment and domain information
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>PF15390 DUF4613: Domain of unknown function (DUF4613) Back     alignment and domain information
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins Back     alignment and domain information
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] Back     alignment and domain information
>KOG2377 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases Back     alignment and domain information
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit Back     alignment and domain information
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query884
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-10
2oaj_A 902 Protein SNI1; WD40 repeat, beta propeller, endocyt 1e-05
3lrv_A343 PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu 4e-05
3lrv_A343 PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu 2e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 62.6 bits (151), Expect = 5e-10
 Identities = 70/517 (13%), Positives = 136/517 (26%), Gaps = 167/517 (32%)

Query: 433 DTDEL-----KILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRV 487
           +T E       IL +         N+  + V      +       H ++  D      R+
Sbjct: 10  ETGEHQYQYKDILSVFEDA--FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67

Query: 488 FGDITQEQKIQSKGLL---------WL-GKIIVVCN--------YIDSSNTYELLF---- 525
           F  +  +Q+   +  +         +L   I             YI+  +    L+    
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR---LYNDNQ 124

Query: 526 -YPRYHLD--------QSSLL---------------CRKSLLAKPIVMDVYEDYILVTYR 561
            + +Y++         + +LL                 K+ +A     DV   Y +    
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL----DVCLSYKVQCKM 180

Query: 562 PFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTAKSHPAAMRFIPDQVPRECSLNNHV 621
            F   IF +          +P+  L  +++L            +  P+   R    +N  
Sbjct: 181 DF--KIFWLN-LKN---CNSPETVLEMLQKLL----------YQIDPNWTSRSDHSSNIK 224

Query: 622 STSSDMLAREPARCLILRANGELSLLDLDDGRERELTDSVELFWVTCGQLEEKTSLIEEV 681
                   +   R L+     E  LL L + +  +       F ++C     K  L    
Sbjct: 225 LRIHS--IQAELRRLLKSKPYENCLLVLLNVQNAKA---WNAFNLSC-----KILLTT-- 272

Query: 682 SWLDYGYRGMQVWYPSPGVDPYKQEDFLQLDPELEFDREVYPLGLLPNAGVVVGVSQRMS 741
                  R  QV             DFL          + + + L P+    +       
Sbjct: 273 -------RFKQV------------TDFLSAATTTHISLDHHSMTLTPDEVKSL------- 306

Query: 742 FSACTEFPCFEPTPQAQTI--LHC-----LLRHLLQR---------DKIEEALR--LAQL 783
                +    +   +  T            +R  L           DK+   +   L  L
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366

Query: 784 SAE--KPHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFSLLEKT-CNFIRNFPE 840
                +  F         +VF       + +     IP       LL     + I++   
Sbjct: 367 EPAEYRKMF------DRLSVF-----PPSAH-----IPT-----ILLSLIWFDVIKSDVM 405

Query: 841 YLNVVVSVARKTDGRHWADLFSAAGRSTEYTFYLHLL 877
              VV  + + +             +  E T  +  +
Sbjct: 406 --VVVNKLHKYS---------LVEKQPKESTISIPSI 431
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902 Back     alignment and structure
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343 Back     alignment and structure
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 884
d1k8kc_371 b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 4e-05
d1tbga_340 b.69.4.1 (A:) beta1-subunit of the signal-transduc 0.001
d1erja_388 b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea 0.003
d1gxra_337 b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum 0.003
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 Back     information, alignment and structure

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.5 bits (103), Expect = 4e-05
 Identities = 16/124 (12%), Positives = 41/124 (33%), Gaps = 7/124 (5%)

Query: 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS 320
           C +   ++  +A+      V +Y+       ++   L +        G V+ + W PD++
Sbjct: 12  CHAWNKDRTQIAICPNNHEVHIYEK-SGNKWVQVHELKE------HNGQVTGVDWAPDSN 64

Query: 321 AFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDE 380
                   R   VW++ G     T+  + ++  +  +     + K+        +     
Sbjct: 65  RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYF 124

Query: 381 YGYR 384
               
Sbjct: 125 EQEN 128
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query884
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 100.0
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 100.0
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 100.0
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 100.0
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 99.98
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 99.98
d1tbga_340 beta1-subunit of the signal-transducing G protein 99.97
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 99.97
d1vyhc1317 Platelet-activating factor acetylhydrolase IB subu 99.97
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 99.97
d1tbga_340 beta1-subunit of the signal-transducing G protein 99.97
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 99.96
d1vyhc1317 Platelet-activating factor acetylhydrolase IB subu 99.96
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 99.96
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 99.96
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 99.95
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 99.94
d1sq9a_393 Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac 99.94
d1pgua1325 Actin interacting protein 1 {Baker's yeast (Saccha 99.94
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 99.94
d1sq9a_393 Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac 99.93
d1k32a3360 Tricorn protease domain 2 {Archaeon Thermoplasma a 99.93
d1pgua1325 Actin interacting protein 1 {Baker's yeast (Saccha 99.93
d1yfqa_342 Cell cycle arrest protein BUB3 {Baker's yeast (Sac 99.91
d1yfqa_342 Cell cycle arrest protein BUB3 {Baker's yeast (Sac 99.91
d1pgua2287 Actin interacting protein 1 {Baker's yeast (Saccha 99.91
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 99.89
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 99.89
d1qksa2432 C-terminal (heme d1) domain of cytochrome cd1-nitr 99.87
d1hzua2426 C-terminal (heme d1) domain of cytochrome cd1-nitr 99.85
d1pgua2287 Actin interacting protein 1 {Baker's yeast (Saccha 99.84
d1k32a3360 Tricorn protease domain 2 {Archaeon Thermoplasma a 99.84
d1hzua2426 C-terminal (heme d1) domain of cytochrome cd1-nitr 99.83
d1qksa2432 C-terminal (heme d1) domain of cytochrome cd1-nitr 99.74
d1l0qa2301 Surface layer protein {Archaeon Methanosarcina maz 99.72
d2madh_373 Methylamine dehydrogenase, H-chain {Gram negative 99.72
d1jmxb_346 Quinohemoprotein amine dehydrogenase B chain {Pseu 99.7
d1l0qa2301 Surface layer protein {Archaeon Methanosarcina maz 99.69
d1pbyb_337 Quinohemoprotein amine dehydrogenase B chain {Para 99.68
d1pbyb_337 Quinohemoprotein amine dehydrogenase B chain {Para 99.64
d2bbkh_355 Methylamine dehydrogenase, H-chain {Paracoccus den 99.62
d1ri6a_333 Putative isomerase YbhE {Escherichia coli [TaxId: 99.61
d1ri6a_333 Putative isomerase YbhE {Escherichia coli [TaxId: 99.61
d1jmxb_346 Quinohemoprotein amine dehydrogenase B chain {Pseu 99.61
d2madh_373 Methylamine dehydrogenase, H-chain {Gram negative 99.6
d2bbkh_355 Methylamine dehydrogenase, H-chain {Paracoccus den 99.59
d1mdah_368 Methylamine dehydrogenase, H-chain {Paracoccus den 99.46
d2bgra1470 Dipeptidyl peptidase IV/CD26, N-terminal domain {P 99.08
d2bgra1470 Dipeptidyl peptidase IV/CD26, N-terminal domain {P 99.01
d1mdah_368 Methylamine dehydrogenase, H-chain {Paracoccus den 98.92
d1qnia2441 Nitrous oxide reductase, N-terminal domain {Pseudo 98.82
d1jofa_365 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu 98.68
d2hqsa1269 TolB, C-terminal domain {Escherichia coli [TaxId: 98.38
d1qnia2441 Nitrous oxide reductase, N-terminal domain {Pseudo 98.36
d2hqsa1269 TolB, C-terminal domain {Escherichia coli [TaxId: 98.26
d1jofa_365 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu 98.23
d2p4oa1302 Hypothetical protein All0351 homologue {Nostoc pun 98.22
d2p4oa1302 Hypothetical protein All0351 homologue {Nostoc pun 98.19
d1xfda1465 Dipeptidyl aminopeptidase-like protein 6, DPP6, N- 97.9
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 97.89
d1pjxa_314 Diisopropylfluorophosphatase (phosphotriesterase, 97.86
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 97.83
d1q7fa_279 Brain tumor cg10719-pa {Fruit fly (Drosophila mela 96.98
d1xfda1465 Dipeptidyl aminopeptidase-like protein 6, DPP6, N- 96.82
d2dg1a1319 Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 96.61
d1q7fa_279 Brain tumor cg10719-pa {Fruit fly (Drosophila mela 96.37
d1k32a2281 Tricorn protease N-terminal domain {Archaeon Therm 96.22
d1k32a2281 Tricorn protease N-terminal domain {Archaeon Therm 95.63
d2dg1a1319 Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 94.74
d1pjxa_314 Diisopropylfluorophosphatase (phosphotriesterase, 94.65
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 93.83
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.4e-30  Score=202.82  Aligned_cols=249  Identities=12%  Similarity=0.090  Sum_probs=113.2

Q ss_pred             CEEEEEEECCEEEEEECCCEEEEEECCCCEEEEEEEEECHHHHHHCCCEEEEEECCCCCEEEEEECCCEEEEEEEEECCC
Q ss_conf             53899973673999991680899744886069999851937564025300799968953999996692899999984684
Q 002753           22 QQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK  101 (884)
Q Consensus        22 ~~vi~~spd~~lla~~t~~~v~IW~~~~~~~~l~~~~rs~~sl~~~G~n~~v~wspD~~~Lav~t~~g~l~iy~i~~~~~  101 (884)
                      ..+++++|+|+.||.++.+++.+|+++ .......+.      .+.+...+++|+|||++||+++.+|.+++|++.....
T Consensus        20 ~~~~a~~~~g~~l~~~~~~~v~i~~~~-~~~~~~~~~------~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~   92 (311)
T d1nr0a1          20 AVVLGNTPAGDKIQYCNGTSVYTVPVG-SLTDTEIYT------EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH   92 (311)
T ss_dssp             CCCCEECTTSSEEEEEETTEEEEEETT-CSSCCEEEC------CCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC
T ss_pred             EEEEEECCCCCEEEEEECCEEEEEECC-CCCEEEEEC------CCCCCEEEEEEECCCCEEECCCCCCEEEEEEEECCCC
T ss_conf             599999699899999969999999999-996617974------7888889999948999672255673674663101111


Q ss_pred             EEECCCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEE--EECCCEEEEEECC--CCEEEEECCCCCCCCEEEECCCCCCC
Q ss_conf             1320799999721223654430223454342029987--5269759999528--92999943795465123202578876
Q 002753          102 SIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNKHMLLGLSD--GSLYSISWKGEFYGAFELVHSSNDSS  177 (884)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i--~~~~~~llv~~~~--g~i~~~~w~~~~~~~~~i~~~~~~~~  177 (884)
                      ....               .      +......+.++  .+++..++++..+  ..+.++.|+.....            
T Consensus        93 ~~~~---------------~------~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~------------  139 (311)
T d1nr0a1          93 ILKT---------------T------IPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSN------------  139 (311)
T ss_dssp             CEEE---------------E------EECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBC------------
T ss_pred             CCCC---------------C------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------------
T ss_conf             0000---------------1------343357543323331110001111221111111111111111------------


Q ss_pred             CCEEECCCCCCCCCEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCE-EEEEECCCCCCEEEECCCCCC---
Q ss_conf             4201024689985100379860002335788628999985786349999718959-999661796210000023300---
Q 002753          178 VAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQL-MSCSVSKKGLKLAEFIKIDKE---  253 (884)
Q Consensus       178 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~-~~~~~~~~~~~~~~~~~~~~~---  253 (884)
                                              ..+..+...|.++.|          +++|+. +++++.|+.+++|+....+..   
T Consensus       140 ------------------------~~l~~h~~~v~~v~~----------~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~  185 (311)
T d1nr0a1         140 ------------------------GNLTGQARAMNSVDF----------KPSRPFRIISGSDDNTVAIFEGPPFKFKSTF  185 (311)
T ss_dssp             ------------------------BCCCCCSSCEEEEEE----------CSSSSCEEEEEETTSCEEEEETTTBEEEEEE
T ss_pred             ------------------------CCCCCCCCCCCCCCC----------CCCCEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             ------------------------111111111111111----------2111012000112211111111111111111


Q ss_pred             CCCCCCEE-EEECCCCCEEEEEECCCEEEEEECCCCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEE
Q ss_conf             59888189-99917997999993298699997358884028995214799989986858999888998899999289699
Q 002753          254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT  332 (884)
Q Consensus       254 ~~h~~~v~-va~sp~~~~latg~~dg~I~iw~~~~~~~~~~~l~~~~~~~s~~h~g~V~~i~~spdg~~lasg~~dg~i~  332 (884)
                      .+|...+. ++++|+++++++|+.||.+++|+..+ ......+... .....+|.++|.+++|+|||++|++|+.||.++
T Consensus       186 ~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~-~~~~~~~~~~-~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~  263 (311)
T d1nr0a1         186 GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD-GTKTGVFEDD-SLKNVAHSGSVFGLTWSPDGTKIASASADKTIK  263 (311)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEEECBCT-TSSSCSSSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEE
T ss_conf             11111111123476422121111111110001244-6411222111-111100246532102478899999993799699


Q ss_pred             EEECCCCEEEEEEC
Q ss_conf             99515884578762
Q 002753          333 VWSVSGCRLMSTIR  346 (884)
Q Consensus       333 iWs~~~~~l~~tl~  346 (884)
                      +|++.+++++.++.
T Consensus       264 iwd~~t~~~~~~l~  277 (311)
T d1nr0a1         264 IWNVATLKVEKTIP  277 (311)
T ss_dssp             EEETTTTEEEEEEE
T ss_pred             EEECCCCCEEEEEE
T ss_conf             99999996999997
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} Back     information, alignment and structure
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} Back     information, alignment and structure
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Back     information, alignment and structure
>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} Back     information, alignment and structure
>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Back     information, alignment and structure
>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} Back     information, alignment and structure
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Back     information, alignment and structure
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Back     information, alignment and structure
>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure