Citrus Sinensis ID: 002773
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 882 | 2.2.26 [Sep-21-2011] | |||||||
| Q9C585 | 871 | Ubiquitin carboxyl-termin | yes | no | 0.970 | 0.982 | 0.635 | 0.0 | |
| O22207 | 924 | Ubiquitin carboxyl-termin | no | no | 0.953 | 0.910 | 0.446 | 0.0 | |
| Q9ZSB5 | 923 | Ubiquitin carboxyl-termin | no | no | 0.946 | 0.904 | 0.433 | 0.0 | |
| Q93Y01 | 910 | Ubiquitin carboxyl-termin | no | no | 0.931 | 0.903 | 0.437 | 0.0 | |
| Q9MAQ3 | 892 | Putative ubiquitin carbox | no | no | 0.846 | 0.837 | 0.442 | 1e-174 | |
| B2GUZ1 | 961 | Ubiquitin carboxyl-termin | yes | no | 0.857 | 0.786 | 0.366 | 1e-124 | |
| A6QR55 | 963 | Ubiquitin carboxyl-termin | yes | no | 0.925 | 0.847 | 0.352 | 1e-123 | |
| Q13107 | 963 | Ubiquitin carboxyl-termin | yes | no | 0.670 | 0.613 | 0.415 | 1e-122 | |
| Q5RCD3 | 963 | Ubiquitin carboxyl-termin | yes | no | 0.670 | 0.613 | 0.415 | 1e-121 | |
| Q2HJE4 | 952 | Ubiquitin carboxyl-termin | no | no | 0.671 | 0.621 | 0.356 | 4e-85 |
| >sp|Q9C585|UBP8_ARATH Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana GN=UBP8 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 1132 bits (2927), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 561/883 (63%), Positives = 692/883 (78%), Gaps = 27/883 (3%)
Query: 6 EDHSDSTHRVDSDNSSSNNNNNDNDQRVYLVPYRWWRDAQESTSSDSDKKRGVLYTATQG 65
E +T R+DS N +QRVY VP RWW+DAQ+S S+S +KR +LYTA+ G
Sbjct: 8 ESPDSTTQRIDSFN---------GEQRVYFVPLRWWKDAQDSMPSESVEKREILYTASCG 58
Query: 66 TSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWLQALKC- 124
+SYGGPMK+INNIFNSD++F+LRRE + +LQNGE GE VSGRD+ALV +MWLQALK
Sbjct: 59 SSYGGPMKLINNIFNSDILFDLRREGD-ALQNGETGEASVSGRDFALVSSDMWLQALKWY 117
Query: 125 -DTKVAAKNRKSFLASEDDMADVYPLQLRLSVMRETNSLGVKISKKDNAVELFKRACKIF 183
D K K KSF A D DVYP+QLRLSV++ETNSL VKI KKDN+VE F+RACKIF
Sbjct: 118 HDDKNTEKGVKSFSAGGVDRGDVYPVQLRLSVLQETNSLAVKICKKDNSVECFRRACKIF 177
Query: 184 SIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLELQIYGLSDSLKCREGRKD 243
S++SE L IWD SGQTTL+F +D + SKDC + +D EILLELQIYGLSDS+K +E +K+
Sbjct: 178 SLDSEQLRIWDISGQTTLFFESDVSN-SKDCQQQADQEILLELQIYGLSDSIKLKESKKE 236
Query: 244 EMAVQHSNGSLTNGS-----FGIVRNSSITFSGRSGEAGCLGLTGLQNLGNTCFMNSALQ 298
+ + Q +NG +TNG F R++S++F G++GEAG LGLTGLQNLGNTCFMNS+LQ
Sbjct: 237 DGSTQQTNG-ITNGMNGGTVFRFGRSNSLSFLGKAGEAGTLGLTGLQNLGNTCFMNSSLQ 295
Query: 299 CLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRTFKSKL 358
CL HTPKLVD+FLG+Y +EIN DNPLGM GEIALAFGDLLR LWAPGA+ V+PRTFK+KL
Sbjct: 296 CLAHTPKLVDFFLGEYSKEINLDNPLGMKGEIALAFGDLLRSLWAPGASTVAPRTFKAKL 355
Query: 359 ARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNH 418
ARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVK KPY EAKDGDGR D ++ADEYW+NH
Sbjct: 356 ARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKNKPYVEAKDGDGRPDAEVADEYWRNH 415
Query: 419 LARNDSIIVDLCQGQYKSTLVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGT 478
+ARNDSIIVD+CQGQYKSTLVCP+CKKVSV FDPFMYLSLPLP T++R M LTV++ DG+
Sbjct: 416 VARNDSIIVDVCQGQYKSTLVCPICKKVSVMFDPFMYLSLPLPCTSMRTMDLTVMSADGS 475
Query: 479 AKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAEIYNHQIIRYLEEPADSISLIR 538
+ P P T+ VPK+GKFEDL +AL AC+L ETLLV E+YN++IIR+LEEP DS++LIR
Sbjct: 476 SLPIPLTVNVPKFGKFEDLHKALVTACSLPEEETLLVTEVYNNRIIRFLEEPTDSLTLIR 535
Query: 539 DDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVSYLAHGLDI 598
D D+LV YRL+K+ + PL+V+MHQ+LEEQ+I GK + A GIPLV+++ + +G D+
Sbjct: 536 DGDKLVVYRLKKDANNSPLIVYMHQKLEEQFISGKSSPTWKAFGIPLVSRLCDVENGSDV 595
Query: 599 RNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKE-VEPPS 657
NLYL+LL F +P + F N+ T E + + + + VKE E
Sbjct: 596 ENLYLKLLSSFKMPT-EFFTENL-ENPTEEEATDKTDTDGTTSVEDTNSTDVKETTESLP 653
Query: 658 DAELQFYLTDEKGIVKNSKIVMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEI 717
D L+ YLTD++G ++++ +P+ + + ++VL W K ++ YDT LLSS PE+
Sbjct: 654 DPVLRLYLTDDRGNSIEAEMLKEKPVNKS---KRLNVLARWPVKELDVYDTCLLSSLPEV 710
Query: 718 FKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILV 777
KSG KRPQESVSL+KCLEAFLTEEPLGP+DMWYCPGCK+H QA KKLDLWRLPEILV
Sbjct: 711 SKSG--TKRPQESVSLFKCLEAFLTEEPLGPDDMWYCPGCKEHRQAIKKLDLWRLPEILV 768
Query: 778 IHLKRFSYSRFSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMGGGH 837
IHLKRFSYSRF KNKLE YVDFP+DNLDLS+++++ N + + RYMLYA+SNHYGSMGGGH
Sbjct: 769 IHLKRFSYSRFMKNKLEAYVDFPLDNLDLSSYISYKNGQTTYRYMLYAISNHYGSMGGGH 828
Query: 838 YTAFVHHGGGQWYDFDDSHVYPISQDKIKTSAAYVLFYRRVVE 880
YTA+VHHGG +WYDFDDSHV+ ISQ+KIKTSAAYVLFY+R+V+
Sbjct: 829 YTAYVHHGGDRWYDFDDSHVHQISQEKIKTSAAYVLFYKRLVD 871
|
Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2 |
| >sp|O22207|UBP5_ARATH Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana GN=UBP5 PE=1 SV=2 | Back alignment and function description |
|---|
| >sp|Q9ZSB5|UBP10_ARATH Ubiquitin carboxyl-terminal hydrolase 10 OS=Arabidopsis thaliana GN=UBP10 PE=2 SV=2 | Back alignment and function description |
|---|
| >sp|Q93Y01|UBP9_ARATH Ubiquitin carboxyl-terminal hydrolase 9 OS=Arabidopsis thaliana GN=UBP9 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|Q9MAQ3|UBP11_ARATH Putative ubiquitin carboxyl-terminal hydrolase 11 OS=Arabidopsis thaliana GN=UBP11 PE=3 SV=2 | Back alignment and function description |
|---|
| >sp|B2GUZ1|UBP4_RAT Ubiquitin carboxyl-terminal hydrolase 4 OS=Rattus norvegicus GN=Usp4 PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|A6QR55|UBP4_BOVIN Ubiquitin carboxyl-terminal hydrolase 4 OS=Bos taurus GN=USP4 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|Q13107|UBP4_HUMAN Ubiquitin carboxyl-terminal hydrolase 4 OS=Homo sapiens GN=USP4 PE=1 SV=3 | Back alignment and function description |
|---|
| >sp|Q5RCD3|UBP4_PONAB Ubiquitin carboxyl-terminal hydrolase 4 OS=Pongo abelii GN=USP4 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|Q2HJE4|UBP15_BOVIN Ubiquitin carboxyl-terminal hydrolase 15 OS=Bos taurus GN=USP15 PE=2 SV=1 | Back alignment and function description |
|---|
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 882 | ||||||
| 255549649 | 889 | Ubiquitin carboxyl-terminal hydrolase, p | 0.984 | 0.976 | 0.736 | 0.0 | |
| 359479088 | 882 | PREDICTED: ubiquitin carboxyl-terminal h | 0.981 | 0.981 | 0.717 | 0.0 | |
| 356543638 | 874 | PREDICTED: ubiquitin carboxyl-terminal h | 0.977 | 0.986 | 0.684 | 0.0 | |
| 449444827 | 877 | PREDICTED: ubiquitin carboxyl-terminal h | 0.956 | 0.962 | 0.687 | 0.0 | |
| 356550050 | 872 | PREDICTED: ubiquitin carboxyl-terminal h | 0.977 | 0.988 | 0.681 | 0.0 | |
| 357453291 | 871 | Ubiquitin carboxyl-terminal hydrolase [M | 0.972 | 0.985 | 0.676 | 0.0 | |
| 257050978 | 871 | RecName: Full=Ubiquitin carboxyl-termina | 0.970 | 0.982 | 0.635 | 0.0 | |
| 13374862 | 901 | ubiquitin-specific protease-like protein | 0.970 | 0.950 | 0.615 | 0.0 | |
| 240256325 | 913 | ubiquitin-specific protease 8 [Arabidops | 0.970 | 0.937 | 0.604 | 0.0 | |
| 297812317 | 891 | ubiquitin carboxyl-terminal hydrolase 8 | 0.961 | 0.951 | 0.618 | 0.0 |
| >gi|255549649|ref|XP_002515876.1| Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis] gi|223545031|gb|EEF46545.1| Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1350 bits (3494), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 658/894 (73%), Positives = 755/894 (84%), Gaps = 26/894 (2%)
Query: 4 LAEDHSDSTHRV-DSDNSSSNNNNNDNDQRVYLVPYRWWRDAQEST-SSDSDKKRGVLYT 61
++ED SD THR DSDN NDQR+Y VPYRWW+DAQ+ST SS+SD KRGVLY
Sbjct: 6 VSEDLSDLTHRQPDSDN---------NDQRLYFVPYRWWKDAQDSTISSESDGKRGVLYM 56
Query: 62 ATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWLQA 121
T G+SY GPMK+INNIFNSDLV NLRREEE SLQNGENGEVGVSGRDYALV GEMWL+A
Sbjct: 57 GTSGSSYAGPMKLINNIFNSDLVLNLRREEE-SLQNGENGEVGVSGRDYALVSGEMWLKA 115
Query: 122 LK--CDTKVAAKNRKSFLASEDDMADVYPLQLRLSVMRETNSLGVKISKKDNAVELFKRA 179
LK D KVA+K+ K+F A+EDDM+DVYPLQLRLSV+RE NSLGVKISKK+NA ELF+RA
Sbjct: 116 LKWHSDAKVASKSSKTFSAAEDDMSDVYPLQLRLSVLREVNSLGVKISKKENATELFRRA 175
Query: 180 CKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLELQIYGLSDSLKCRE 239
CKIFS++SE+L IWDFSGQTTL+F+NDK+K K+ R D EI+LELQ+YGLSD++KCR+
Sbjct: 176 CKIFSVDSEMLRIWDFSGQTTLFFVNDKSKSPKESQRQLDQEIVLELQVYGLSDNMKCRD 235
Query: 240 GRKDEMAVQHSNGSLTNGSF---GIVRNSSITFS--------GRSGEAGCLGLTGLQNLG 288
G+KD+ Q+ NG+ ++G+ G V N+S +F G+SGEAG LGLTGLQNLG
Sbjct: 236 GKKDDAVAQNCNGTHSSGTSLMNGSVSNTSTSFFRCDSSALFGKSGEAGSLGLTGLQNLG 295
Query: 289 NTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPGAAP 348
NTCFMNSA+QCL HTPKLVDYFLGDY REINHDNPLGMDGEIALAFGDLLRKLWAPGA P
Sbjct: 296 NTCFMNSAIQCLAHTPKLVDYFLGDYGREINHDNPLGMDGEIALAFGDLLRKLWAPGATP 355
Query: 349 VSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDE 408
V+PRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVK KPY EAKDG+GR DE
Sbjct: 356 VAPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKSKPYVEAKDGEGRLDE 415
Query: 409 DIADEYWQNHLARNDSIIVDLCQGQYKSTLVCPVCKKVSVTFDPFMYLSLPLPSTTVRMM 468
++ADEYWQNH+ARNDSIIVD+CQGQYKSTLVCP+CKKVSVTFDPFMYLSLPLPST +R M
Sbjct: 416 EVADEYWQNHVARNDSIIVDICQGQYKSTLVCPICKKVSVTFDPFMYLSLPLPSTNIRTM 475
Query: 469 TLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAEIYNHQIIRYLE 528
TLTVV+TDG+++PS FTI+VPKYGK EDL +ALS AC+LG++E LLVAE+YN++IIRYLE
Sbjct: 476 TLTVVSTDGSSQPSSFTISVPKYGKCEDLTQALSKACSLGIDEMLLVAEVYNNRIIRYLE 535
Query: 529 EPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAK 588
EP+DS+SLIRD D+LVAYRL+KE D PLVVFMHQ +EEQY+HGK TS A GIPLV
Sbjct: 536 EPSDSLSLIRDGDRLVAYRLKKELDNIPLVVFMHQHMEEQYVHGKQTSSWKAFGIPLVGP 595
Query: 589 VSYLAHGLDIRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPS 648
V L +G DI NLYL+LL PF IPA D + STA EE+T + + G A PS
Sbjct: 596 VHSLVNGSDIHNLYLKLLSPFHIPADDGMYSCNNTTSTAKEEITEKDNGCSASHGNANPS 655
Query: 649 SVKEVEPPSD-AELQFYLTDEKGIVKNSKIVMNEPIAMTGVPEEVHVLVCWSGKLIEQYD 707
V+E S +ELQFY+TDEKGIV++ KI +NEP+ +TGVP+ +VLVCW+ K IEQYD
Sbjct: 656 IVEEATNSSSYSELQFYITDEKGIVQDLKIGINEPVPVTGVPKRFNVLVCWTEKQIEQYD 715
Query: 708 TRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKL 767
TRLLSS PE+FKSGFL KRPQESVSLYKCLEAFL EEPLGP+DMW+CP CKKH QASKKL
Sbjct: 716 TRLLSSLPEVFKSGFLAKRPQESVSLYKCLEAFLKEEPLGPDDMWFCPSCKKHRQASKKL 775
Query: 768 DLWRLPEILVIHLKRFSYSRFSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVS 827
DLWRLPEILVIHLKRFSY+RF KNKLE YVDFPVD+LDLS ++++ N +LS+RYMLYA+S
Sbjct: 776 DLWRLPEILVIHLKRFSYTRFMKNKLEAYVDFPVDDLDLSAYISYKNGQLSHRYMLYAIS 835
Query: 828 NHYGSMGGGHYTAFVHHGGGQWYDFDDSHVYPISQDKIKTSAAYVLFYRRVVEV 881
NHYGSMGGGHYTAFVHHG G+WYDFDDS V+PISQDKIKTSAAYVLFYRRVVEV
Sbjct: 836 NHYGSMGGGHYTAFVHHGAGRWYDFDDSLVHPISQDKIKTSAAYVLFYRRVVEV 889
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359479088|ref|XP_003632213.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|356543638|ref|XP_003540267.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|449444827|ref|XP_004140175.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|356550050|ref|XP_003543403.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|357453291|ref|XP_003596922.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] gi|355485970|gb|AES67173.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|257050978|sp|Q9C585.2|UBP8_ARATH RecName: Full=Ubiquitin carboxyl-terminal hydrolase 8; AltName: Full=Deubiquitinating enzyme 8; Short=AtUBP8; AltName: Full=Ubiquitin thioesterase 8; AltName: Full=Ubiquitin-specific-processing protease 8 | Back alignment and taxonomy information |
|---|
| >gi|13374862|emb|CAC34496.1| ubiquitin-specific protease-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|240256325|ref|NP_568411.4| ubiquitin-specific protease 8 [Arabidopsis thaliana] gi|240256327|ref|NP_851052.4| ubiquitin-specific protease 8 [Arabidopsis thaliana] gi|332005587|gb|AED92970.1| ubiquitin-specific protease 8 [Arabidopsis thaliana] gi|332005588|gb|AED92971.1| ubiquitin-specific protease 8 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|297812317|ref|XP_002874042.1| ubiquitin carboxyl-terminal hydrolase 8 [Arabidopsis lyrata subsp. lyrata] gi|297319879|gb|EFH50301.1| ubiquitin carboxyl-terminal hydrolase 8 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 882 | ||||||
| TAIR|locus:505006627 | 871 | UBP8 "ubiquitin-specific prote | 0.951 | 0.963 | 0.635 | 6.9e-292 | |
| TAIR|locus:2058490 | 924 | UBP5 "ubiquitin-specific prote | 0.704 | 0.672 | 0.495 | 1.5e-177 | |
| TAIR|locus:2139202 | 923 | UBP9 "AT4G10570" [Arabidopsis | 0.698 | 0.667 | 0.514 | 2.2e-176 | |
| TAIR|locus:2139222 | 910 | UBP10 "AT4G10590" [Arabidopsis | 0.649 | 0.629 | 0.538 | 1.4e-174 | |
| TAIR|locus:2037985 | 892 | UBP11 "AT1G32850" [Arabidopsis | 0.410 | 0.405 | 0.515 | 2.9e-162 | |
| UNIPROTKB|Q9Y4E8 | 981 | USP15 "Ubiquitin carboxyl-term | 0.412 | 0.371 | 0.422 | 1.7e-125 | |
| UNIPROTKB|F6Z5C0 | 982 | usp15 "Ubiquitin carboxyl-term | 0.410 | 0.368 | 0.425 | 3.5e-125 | |
| MGI|MGI:101857 | 981 | Usp15 "ubiquitin specific pept | 0.410 | 0.369 | 0.428 | 4.5e-125 | |
| UNIPROTKB|F1SKD5 | 982 | LOC100737425 "Ubiquitin carbox | 0.412 | 0.370 | 0.422 | 9.3e-125 | |
| UNIPROTKB|E9PCQ3 | 956 | USP15 "Ubiquitin carboxyl-term | 0.679 | 0.626 | 0.342 | 1.3e-124 |
| TAIR|locus:505006627 UBP8 "ubiquitin-specific protease 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2803 (991.8 bits), Expect = 6.9e-292, P = 6.9e-292
Identities = 546/859 (63%), Positives = 672/859 (78%)
Query: 31 QRVYLVPYRWWRDAQESTSSDSDKKRGVLYTATQGTSYGGPMKIINNIFNSDLVFNLRRE 90
QRVY VP RWW+DAQ+S S+S +KR +LYTA+ G+SYGGPMK+INNIFNSD++F+LRRE
Sbjct: 24 QRVYFVPLRWWKDAQDSMPSESVEKREILYTASCGSSYGGPMKLINNIFNSDILFDLRRE 83
Query: 91 EEVSLQNGENGEVGVSGRDYALVPGEMWLQALKC--DTKVAAKNRKSFLASEDDMADVYP 148
+ +LQNGE GE VSGRD+ALV +MWLQALK D K K KSF A D DVYP
Sbjct: 84 GD-ALQNGETGEASVSGRDFALVSSDMWLQALKWYHDDKNTEKGVKSFSAGGVDRGDVYP 142
Query: 149 LQLRLSVMRETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKN 208
+QLRLSV++ETNSL VKI KKDN+VE F+RACKIFS++SE L IWD SGQTTL+F +D +
Sbjct: 143 VQLRLSVLQETNSLAVKICKKDNSVECFRRACKIFSLDSEQLRIWDISGQTTLFFESDVS 202
Query: 209 KFSKDCLRLSDHEILLELQIYGLSDSLKCREGRKDEMAVQHSNGSLTNGS-----FGIVR 263
SKDC + +D EILLELQIYGLSDS+K +E +K++ + Q +NG +TNG F R
Sbjct: 203 N-SKDCQQQADQEILLELQIYGLSDSIKLKESKKEDGSTQQTNG-ITNGMNGGTVFRFGR 260
Query: 264 NSSITFSGRSGEAXXXXXXXXXXXXXXXFMNSALQCLVHTPKLVDYFLGDYFREINHDNP 323
++S++F G++GEA FMNS+LQCL HTPKLVD+FLG+Y +EIN DNP
Sbjct: 261 SNSLSFLGKAGEAGTLGLTGLQNLGNTCFMNSSLQCLAHTPKLVDFFLGEYSKEINLDNP 320
Query: 324 LGMDGEIALAFGDLLRKLWAPGAAPVSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDG 383
LGM GEIALAFGDLLR LWAPGA+ V+PRTFK+KLARFAPQFSGFNQHDSQELLAFLLDG
Sbjct: 321 LGMKGEIALAFGDLLRSLWAPGASTVAPRTFKAKLARFAPQFSGFNQHDSQELLAFLLDG 380
Query: 384 LHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVCPVC 443
LHEDLNRVK KPY EAKDGDGR D ++ADEYW+NH+ARNDSIIVD+CQGQYKSTLVCP+C
Sbjct: 381 LHEDLNRVKNKPYVEAKDGDGRPDAEVADEYWRNHVARNDSIIVDVCQGQYKSTLVCPIC 440
Query: 444 KKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSI 503
KKVSV FDPFMYLSLPLP T++R M LTV++ DG++ P P T+ VPK+GKFEDL +AL
Sbjct: 441 KKVSVMFDPFMYLSLPLPCTSMRTMDLTVMSADGSSLPIPLTVNVPKFGKFEDLHKALVT 500
Query: 504 ACALGVNETLLVAEIYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQ 563
AC+L ETLLV E+YN++IIR+LEEP DS++LIRD D+LV YRL+K+ + PL+V+MHQ
Sbjct: 501 ACSLPEEETLLVTEVYNNRIIRFLEEPTDSLTLIRDGDKLVVYRLKKDANNSPLIVYMHQ 560
Query: 564 QLEEQYIHGKLTSCPNALGIPLVAKVSYLAHGLDIRNLYLELLKPFCIPAKDTFNNNVTA 623
+LEEQ+I GK + A GIPLV+++ + +G D+ NLYL+LL F +P + F N+
Sbjct: 561 KLEEQFISGKSSPTWKAFGIPLVSRLCDVENGSDVENLYLKLLSSFKMPT-EFFTENLE- 618
Query: 624 GSTAIEEVTRIVDNVPVTGGVATPSS-VKEV-EPPSDAELQFYLTDEKGIVKNSKIVMNE 681
+ EE T D T T S+ VKE E D L+ YLTD++G ++++ +
Sbjct: 619 -NPTEEEATDKTDTDGTTSVEDTNSTDVKETTESLPDPVLRLYLTDDRGNSIEAEMLKEK 677
Query: 682 PIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFL 741
P+ + + ++VL W K ++ YDT LLSS PE+ KSG KRPQESVSL+KCLEAFL
Sbjct: 678 PVNKS---KRLNVLARWPVKELDVYDTCLLSSLPEVSKSG--TKRPQESVSLFKCLEAFL 732
Query: 742 TEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFSKNKLETYVDFPV 801
TEEPLGP+DMWYCPGCK+H QA KKLDLWRLPEILVIHLKRFSYSRF KNKLE YVDFP+
Sbjct: 733 TEEPLGPDDMWYCPGCKEHRQAIKKLDLWRLPEILVIHLKRFSYSRFMKNKLEAYVDFPL 792
Query: 802 DNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMGGGHYTAFVHHGGGQWYDFDDSHVYPIS 861
DNLDLS+++++ N + + RYMLYA+SNHYGSMGGGHYTA+VHHGG +WYDFDDSHV+ IS
Sbjct: 793 DNLDLSSYISYKNGQTTYRYMLYAISNHYGSMGGGHYTAYVHHGGDRWYDFDDSHVHQIS 852
Query: 862 QDKIKTSAAYVLFYRRVVE 880
Q+KIKTSAAYVLFY+R+V+
Sbjct: 853 QEKIKTSAAYVLFYKRLVD 871
|
|
| TAIR|locus:2058490 UBP5 "ubiquitin-specific protease 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2139202 UBP9 "AT4G10570" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2139222 UBP10 "AT4G10590" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2037985 UBP11 "AT1G32850" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9Y4E8 USP15 "Ubiquitin carboxyl-terminal hydrolase 15" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F6Z5C0 usp15 "Ubiquitin carboxyl-terminal hydrolase 15" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:101857 Usp15 "ubiquitin specific peptidase 15" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1SKD5 LOC100737425 "Ubiquitin carboxyl-terminal hydrolase" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E9PCQ3 USP15 "Ubiquitin carboxyl-terminal hydrolase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| A6QR55 | UBP4_BOVIN | 3, ., 4, ., 1, 9, ., 1, 2 | 0.3526 | 0.9251 | 0.8473 | yes | no |
| Q9C585 | UBP8_ARATH | 3, ., 4, ., 1, 9, ., 1, 2 | 0.6353 | 0.9705 | 0.9827 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.19 | 0.976 |
| 3rd Layer | 3.4.19.12 | 0.991 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 882 | |||
| COG5560 | 823 | COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po | 1e-137 | |
| cd02674 | 230 | cd02674, Peptidase_C19R, A subfamily of peptidase | 3e-58 | |
| pfam00443 | 313 | pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol | 1e-50 | |
| pfam00443 | 313 | pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol | 5e-40 | |
| cd02257 | 255 | cd02257, Peptidase_C19, Peptidase C19 contains ubi | 5e-39 | |
| COG5533 | 415 | COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos | 2e-38 | |
| cd02660 | 328 | cd02660, Peptidase_C19D, A subfamily of Peptidase | 3e-33 | |
| cd02661 | 304 | cd02661, Peptidase_C19E, A subfamily of Peptidase | 2e-31 | |
| cd02660 | 328 | cd02660, Peptidase_C19D, A subfamily of Peptidase | 3e-27 | |
| cd02661 | 304 | cd02661, Peptidase_C19E, A subfamily of Peptidase | 9e-27 | |
| cd02667 | 279 | cd02667, Peptidase_C19K, A subfamily of Peptidase | 2e-26 | |
| COG5533 | 415 | COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos | 2e-24 | |
| cd02659 | 334 | cd02659, peptidase_C19C, A subfamily of Peptidase | 1e-22 | |
| cd02667 | 279 | cd02667, Peptidase_C19K, A subfamily of Peptidase | 2e-19 | |
| cd02674 | 230 | cd02674, Peptidase_C19R, A subfamily of peptidase | 9e-19 | |
| cd02663 | 300 | cd02663, Peptidase_C19G, A subfamily of Peptidase | 2e-18 | |
| cd02668 | 324 | cd02668, Peptidase_C19L, A subfamily of Peptidase | 3e-18 | |
| cd02257 | 255 | cd02257, Peptidase_C19, Peptidase C19 contains ubi | 5e-15 | |
| cd02671 | 332 | cd02671, Peptidase_C19O, A subfamily of Peptidase | 3e-14 | |
| cd02657 | 305 | cd02657, Peptidase_C19A, A subfamily of Peptidase | 3e-13 | |
| cd02658 | 311 | cd02658, Peptidase_C19B, A subfamily of Peptidase | 1e-12 | |
| cd02669 | 440 | cd02669, Peptidase_C19M, A subfamily of Peptidase | 4e-12 | |
| cd02657 | 305 | cd02657, Peptidase_C19A, A subfamily of Peptidase | 1e-11 | |
| cd02664 | 327 | cd02664, Peptidase_C19H, A subfamily of Peptidase | 1e-11 | |
| cd02662 | 240 | cd02662, Peptidase_C19F, A subfamily of Peptidase | 1e-11 | |
| cd02669 | 440 | cd02669, Peptidase_C19M, A subfamily of Peptidase | 2e-11 | |
| cd02658 | 311 | cd02658, Peptidase_C19B, A subfamily of Peptidase | 4e-10 | |
| cd02664 | 327 | cd02664, Peptidase_C19H, A subfamily of Peptidase | 3e-09 | |
| pfam13423 | 296 | pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydr | 1e-08 | |
| COG5207 | 749 | COG5207, UBP14, Isopeptidase T [Posttranslational | 3e-08 | |
| cd02663 | 300 | cd02663, Peptidase_C19G, A subfamily of Peptidase | 4e-08 | |
| cd02671 | 332 | cd02671, Peptidase_C19O, A subfamily of Peptidase | 4e-08 | |
| COG5077 | 1089 | COG5077, COG5077, Ubiquitin carboxyl-terminal hydr | 4e-08 | |
| cd02673 | 245 | cd02673, Peptidase_C19Q, A subfamily of Peptidase | 5e-07 | |
| cd02674 | 230 | cd02674, Peptidase_C19R, A subfamily of peptidase | 9e-07 | |
| cd02257 | 255 | cd02257, Peptidase_C19, Peptidase C19 contains ubi | 3e-06 | |
| cd02659 | 334 | cd02659, peptidase_C19C, A subfamily of Peptidase | 8e-06 | |
| cd02662 | 240 | cd02662, Peptidase_C19F, A subfamily of Peptidase | 6e-05 | |
| COG5077 | 1089 | COG5077, COG5077, Ubiquitin carboxyl-terminal hydr | 2e-04 | |
| cd02668 | 324 | cd02668, Peptidase_C19L, A subfamily of Peptidase | 0.001 | |
| cd02672 | 268 | cd02672, Peptidase_C19P, A subfamily of Peptidase | 0.001 | |
| COG5207 | 749 | COG5207, UBP14, Isopeptidase T [Posttranslational | 0.002 | |
| cd02670 | 241 | cd02670, Peptidase_C19N, A subfamily of Peptidase | 0.002 |
| >gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 429 bits (1105), Expect = e-137
Identities = 252/752 (33%), Positives = 348/752 (46%), Gaps = 82/752 (10%)
Query: 145 DVYPLQLRLSVMRETN----SLGVKI-----SKKDNAVELFKRACKIFSIESELLHIWDF 195
+ YP+ +L + N +LG S +L +R F S+ +WD
Sbjct: 133 ESYPVVFKLHWLFSINGSLINLGHDPVPHSASSHGTLRDLSERVMNAFVDPSDDFRLWDV 192
Query: 196 SGQTTLYFLNDKNKFSKDCLRLSDHEILLELQIYGLSDSLKCREGRKDEMAVQHSNGSLT 255
+ L + F + + SD +L L L + ++ N
Sbjct: 193 VPEIMGLRLGLDSFFRRYRVLASDGRVLHPLTRLELFEDRSV-----LLLSKITRNPDWL 247
Query: 256 NGSFGIVRNSSITFSGRSGEAGCLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGD-Y 314
S N SI G GL+NLGNTC+MNSALQCL+HT +L DYFL D Y
Sbjct: 248 VDSIVDDHNRSIN--------KEAGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEY 299
Query: 315 FREINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRTFKSKLARFAPQFSGFNQHDSQ 374
IN +NPLGM G +A A+ DL+++L+ +P FK + F +FSG++Q DSQ
Sbjct: 300 EESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGFKKTIGSFNEEFSGYDQQDSQ 359
Query: 375 ELLAFLLDGLHEDLNRVKCKPYAEAKD---GDGRSDEDIADEYWQNHLARNDSIIVDLCQ 431
E +AFLLDGLHEDLNR+ KPY D GD + A E W HL RNDSII DL Q
Sbjct: 360 EFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECWWEHLKRNDSIITDLFQ 419
Query: 432 GQYKSTLVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKY 491
G YKSTL CP C VS+TFDPFM L+LPLP + V T+ V G P I +
Sbjct: 420 GMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGR--RQPLKIELDAS 477
Query: 492 GKFEDLIRALSIACALGVNETLLVAEIYNHQIIRYLEEPADSIS-LIRDDDQLVAYRLRK 550
L + + + V IY LE + I D + Y +
Sbjct: 478 STIRGLKKLVDAEYGKLGCFEIKVMCIYYGGNYNMLEPADKVLLQDIPQTDFVYLY---E 534
Query: 551 ENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVSYLAHGLDIRN-LYLELLKPF 609
ND V +H ++E+ Y +L G P +L + I+ +Y +L+K F
Sbjct: 535 TNDNGIEVPVVHLRIEKGYKSKRL------FGDP------FLQLNVLIKASIYDKLVKEF 582
Query: 610 CIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEK 669
+ V T ++ V+ +E P +L E
Sbjct: 583 -----EELLVLVEMKKTDVDLVS-----------EQVRLLREESSP------SSWLKLET 620
Query: 670 GI-VKNSKIVMNEPIAMTGVPEEVHVLVCWSGK-LIEQYDTRLLSSFPEIFKSGFLPKRP 727
I K + V E + V + W K + + L + EI
Sbjct: 621 EIDTKREEQVEEEGQMNF--NDAVVISCEWEEKRYLSLFSYDPLWTIREI-------GAA 671
Query: 728 QESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSR 787
+ +++L CL F E LG D WYCPGCK+ QASK+++LWRLP IL+IHLKRFS R
Sbjct: 672 ERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVR 731
Query: 788 FSKNKLETYVDFPVDNLDLSTHVAH-LNDKLSNRYMLYAVSNHYGSMGGGHYTAFVHHGG 846
++K++ V++P+D+LDLS + +L Y LYAV NHYG + GGHYTA+ +
Sbjct: 732 SFRDKIDDLVEYPIDDLDLSGVEYMVDDPRLI--YDLYAVDNHYGGLSGGHYTAYARNFA 789
Query: 847 -GQWYDFDDSHVYPISQDKIKTSAAYVLFYRR 877
WY FDDS + + + TS+AYVLFYRR
Sbjct: 790 NNGWYLFDDSRITEVDPEDSVTSSAYVLFYRR 821
|
Length = 823 |
| >gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
|---|
| >gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
|---|
| >gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|239138 cd02673, Peptidase_C19Q, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
|---|
| >gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239137 cd02672, Peptidase_C19P, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|239135 cd02670, Peptidase_C19N, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 882 | |||
| COG5560 | 823 | UBP12 Ubiquitin C-terminal hydrolase [Posttranslat | 100.0 | |
| KOG1870 | 842 | consensus Ubiquitin C-terminal hydrolase [Posttran | 100.0 | |
| COG5533 | 415 | UBP5 Ubiquitin C-terminal hydrolase [Posttranslati | 100.0 | |
| KOG1865 | 545 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 100.0 | |
| cd02663 | 300 | Peptidase_C19G A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02671 | 332 | Peptidase_C19O A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02660 | 328 | Peptidase_C19D A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02668 | 324 | Peptidase_C19L A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02669 | 440 | Peptidase_C19M A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02667 | 279 | Peptidase_C19K A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02664 | 327 | Peptidase_C19H A subfamily of Peptidase C19. Pepti | 100.0 | |
| KOG1868 | 653 | consensus Ubiquitin C-terminal hydrolase [Posttran | 100.0 | |
| cd02657 | 305 | Peptidase_C19A A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02658 | 311 | Peptidase_C19B A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02661 | 304 | Peptidase_C19E A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02659 | 334 | peptidase_C19C A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02662 | 240 | Peptidase_C19F A subfamily of Peptidase C19. Pepti | 100.0 | |
| KOG1873 | 877 | consensus Ubiquitin-specific protease [Posttransla | 100.0 | |
| cd02674 | 230 | Peptidase_C19R A subfamily of peptidase C19. Pepti | 100.0 | |
| cd02673 | 245 | Peptidase_C19Q A subfamily of Peptidase C19. Pepti | 100.0 | |
| KOG1867 | 492 | consensus Ubiquitin-specific protease [Posttransla | 100.0 | |
| cd02665 | 228 | Peptidase_C19I A subfamily of Peptidase C19. Pepti | 100.0 | |
| PF00443 | 269 | UCH: Ubiquitin carboxyl-terminal hydrolase; InterP | 100.0 | |
| KOG0944 | 763 | consensus Ubiquitin-specific protease UBP14 [Postt | 100.0 | |
| cd02666 | 343 | Peptidase_C19J A subfamily of Peptidase C19. Pepti | 100.0 | |
| KOG1866 | 944 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 100.0 | |
| COG5077 | 1089 | Ubiquitin carboxyl-terminal hydrolase [Posttransla | 100.0 | |
| cd02257 | 255 | Peptidase_C19 Peptidase C19 contains ubiquitinyl h | 100.0 | |
| cd02672 | 268 | Peptidase_C19P A subfamily of Peptidase C19. Pepti | 100.0 | |
| KOG4598 | 1203 | consensus Putative ubiquitin-specific protease [Po | 100.0 | |
| COG5207 | 749 | UBP14 Isopeptidase T [Posttranslational modificati | 100.0 | |
| KOG1863 | 1093 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 100.0 | |
| cd02670 | 241 | Peptidase_C19N A subfamily of Peptidase C19. Pepti | 100.0 | |
| KOG1864 | 587 | consensus Ubiquitin-specific protease [Posttransla | 100.0 | |
| PF13423 | 295 | UCH_1: Ubiquitin carboxyl-terminal hydrolase | 99.97 | |
| KOG1871 | 420 | consensus Ubiquitin-specific protease [Posttransla | 99.95 | |
| KOG2026 | 442 | consensus Spindle pole body protein - Sad1p [Cytos | 99.95 | |
| KOG1872 | 473 | consensus Ubiquitin-specific protease [Posttransla | 99.93 | |
| PF06337 | 99 | DUSP: DUSP domain; InterPro: IPR006615 Deubiquitin | 99.8 | |
| smart00695 | 86 | DUSP Domain in ubiquitin-specific proteases. | 99.75 | |
| PF14836 | 88 | Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A | 99.49 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 99.47 | |
| PF14533 | 213 | USP7_C2: Ubiquitin-specific protease C-terminal; P | 98.04 | |
| KOG1864 | 587 | consensus Ubiquitin-specific protease [Posttransla | 96.77 | |
| PF15499 | 275 | Peptidase_C98: Ubiquitin-specific peptidase-like, | 96.34 | |
| PF14560 | 87 | Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K | 95.5 | |
| PTZ00044 | 76 | ubiquitin; Provisional | 94.74 | |
| cd01796 | 71 | DDI1_N DNA damage inducible protein 1 ubiquitin-li | 94.42 | |
| cd01807 | 74 | GDX_N ubiquitin-like domain of GDX. GDX contains a | 94.13 | |
| cd01799 | 75 | Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO | 93.78 | |
| cd01806 | 76 | Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn | 93.2 | |
| cd01763 | 87 | Sumo Small ubiquitin-related modifier (SUMO). Smal | 92.87 | |
| cd01803 | 76 | Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40 | 92.73 | |
| cd01812 | 71 | BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter | 92.72 | |
| cd01789 | 84 | Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol | 92.21 | |
| cd01810 | 74 | ISG15_repeat2 ISG15 ubiquitin-like protein, second | 91.98 | |
| cd01794 | 70 | DC_UbP_C dendritic cell derived ubiquitin-like pro | 91.65 | |
| cd01795 | 107 | USP48_C USP ubiquitin-specific protease. The USP ( | 91.3 | |
| PF00240 | 69 | ubiquitin: Ubiquitin family; InterPro: IPR000626 U | 91.22 | |
| cd01798 | 70 | parkin_N amino-terminal ubiquitin-like of parkin p | 91.05 | |
| cd01809 | 72 | Scythe_N Ubiquitin-like domain of Scythe protein. | 90.49 | |
| cd01793 | 74 | Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui | 90.48 | |
| cd01808 | 71 | hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC | 90.35 | |
| PF00789 | 82 | UBX: UBX domain; InterPro: IPR001012 The UBX domai | 90.27 | |
| cd01800 | 76 | SF3a120_C Ubiquitin-like domain of Mammalian splic | 89.88 | |
| cd01802 | 103 | AN1_N ubiquitin-like domain of AN1. AN1 (also know | 89.16 | |
| cd01805 | 77 | RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo | 89.04 | |
| cd01791 | 73 | Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know | 88.53 | |
| cd01804 | 78 | midnolin_N Ubiquitin-like domain of midnolin. midn | 88.39 | |
| cd01797 | 78 | NIRF_N amino-terminal ubiquitin-like domain of Np9 | 88.15 | |
| cd01792 | 80 | ISG15_repeat1 ISG15 ubiquitin-like protein, first | 87.44 | |
| smart00166 | 80 | UBX Domain present in ubiquitin-regulatory protein | 86.83 | |
| cd01813 | 74 | UBP_N UBP ubiquitin processing protease. The UBP ( | 86.37 | |
| PF11543 | 80 | UN_NPL4: Nuclear pore localisation protein NPL4; I | 86.34 | |
| PF11976 | 72 | Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter | 85.94 | |
| smart00213 | 64 | UBQ Ubiquitin homologues. Ubiquitin-mediated prote | 84.22 | |
| cd01767 | 77 | UBX UBX (ubiquitin regulatory X) domain. The UBX ( | 82.71 | |
| cd01774 | 85 | Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 i | 82.3 | |
| PF05408 | 193 | Peptidase_C28: Foot-and-mouth virus L-proteinase; | 81.97 | |
| cd01769 | 69 | UBL Ubiquitin-like domain of UBL. UBLs function by | 81.54 | |
| cd01771 | 80 | Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated fac | 81.53 |
| >COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-124 Score=1018.58 Aligned_cols=741 Identities=33% Similarity=0.505 Sum_probs=567.7
Q ss_pred CCCCEEEEEcchhHHHHHHhcCCCCcccccccccccCCCCCCCCCCCCCcccChhhccccccchhcccCcCCccCCCCCC
Q 002773 28 DNDQRVYLVPYRWWRDAQESTSSDSDKKRGVLYTATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSG 107 (882)
Q Consensus 28 ~~g~~~ylIs~~W~~~w~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~pg~IdNs~L~~~~~~~~~~~~~~~~l~~~l~e~ 107 (882)
+.++..|+++..|+...-++...+ ...||||+-.+++. +....++..+.++
T Consensus 42 k~~~~a~i~~y~wyeg~fd~~~~d--------------------g~~pgPi~q~~i~d---------~e~e~lk~sl~e~ 92 (823)
T COG5560 42 KQCEYAVIFAYAWYEGMFDRASCD--------------------GGSPGPIVQGPIVD---------FEPESLKKSLREG 92 (823)
T ss_pred ccCceEEEEehHHhhhhccccccc--------------------CCCCCCCCcccccc---------cChhhcchhhhcC
Confidence 348999999999999887766532 23499998888875 1277899999999
Q ss_pred CCEEEeCHHHHHHHHhcCC-CCcccceeee---cccccccccccceEEEEEEeec---------CCeeEEEEcccccHHH
Q 002773 108 RDYALVPGEMWLQALKCDT-KVAAKNRKSF---LASEDDMADVYPLQLRLSVMRE---------TNSLGVKISKKDNAVE 174 (882)
Q Consensus 108 ~dy~~Vp~~~w~~l~~~yg-~~~~i~R~Vi---~~~~~~v~EvyP~~l~l~~~~~---------~~~~~~~~Sr~~ti~~ 174 (882)
.||..|.+.+|+.|.+||| .|+.++|.++ ......+ |+||..++++...+ .....+.+|+..|+.+
T Consensus 93 idysiis~~vw~llvrwyGl~gl~~pr~tvll~ses~p~v-e~yp~~f~lh~Lf~ing~~~n~gh~p~~~s~ss~~tlrd 171 (823)
T COG5560 93 IDYSIISGAVWQLLVRWYGLAGLITPRITVLLPSESAPEV-ESYPVVFKLHWLFSINGSLINLGHDPVPHSASSHGTLRD 171 (823)
T ss_pred CCeeeechHHHHHHHHHhcccccceeeEEeccccccCCcc-ccccceEEEEEEEeccchhhhcCCCcceeeccccchHHH
Confidence 9999999999999999999 5788899885 3344456 99999999988654 1356789999999999
Q ss_pred HHHHHHhHcCCCCcceEEEEecCCcceeeccCCCc-----------------cchhhccCCCceEEEEE-EecCcccccc
Q 002773 175 LFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNK-----------------FSKDCLRLSDHEILLEL-QIYGLSDSLK 236 (882)
Q Consensus 175 l~~~v~~~f~i~~~~~RlW~~~~~~~~~~l~~~~~-----------------tL~~~~l~~~q~IllE~-~~~g~w~~~~ 236 (882)
+.+++...|-++.+++|||++.......-+...+. |+.+..... ...+|+. ..++.|+...
T Consensus 172 l~e~vmnaf~~psD~FRLw~v~~~~~~~r~~~~s~f~~~~~~a~~~~~l~~~t~~el~~d~-s~lll~kit~np~wlvds 250 (823)
T COG5560 172 LSERVMNAFVDPSDDFRLWDVVPEIMGLRLGLDSFFRRYRVLASDGRVLHPLTRLELFEDR-SVLLLSKITRNPDWLVDS 250 (823)
T ss_pred HHHHHHHHhcCcccceeEEEecCCcccccccCHHHHhhcchhccchhhhcccHHHHhccch-hhhHHhhhccCCccceee
Confidence 99999999999999999999875442221111000 011111111 1111111 1334444321
Q ss_pred cccCCcccccccccCCCcCCCCcccccCCcccccCCCCCCCCCCccccccCCCcccHHHHHHHHhCChHHHHHHHh-ccc
Q 002773 237 CREGRKDEMAVQHSNGSLTNGSFGIVRNSSITFSGRSGEAGCLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLG-DYF 315 (882)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~-~~~ 315 (882)
- -..+..+ . .+ . .|.|||.|+||||||||+||||.||+.|++||++ .|.
T Consensus 251 i------------------------~~~~n~s---i-nk-e-~GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye 300 (823)
T COG5560 251 I------------------------VDDHNRS---I-NK-E-AGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYE 300 (823)
T ss_pred e------------------------cchhhhh---H-Hh-h-ccccceecCCcceecchHHHHHhccHHHHHHhhhhhhH
Confidence 0 0000000 0 11 2 3999999999999999999999999999999995 699
Q ss_pred cccCCCCCCCCchHHHHHHHHHHHHhcCCCCCCCChHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCC
Q 002773 316 REINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKP 395 (882)
Q Consensus 316 ~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~ 395 (882)
.++|.+||+|+.|.+|.+|+.|+++++.++..+++|+.|+..|+.++..|+||.|||+|||++||||+|||+|||+.+||
T Consensus 301 ~~iNe~Nplgmhg~vAsayadLik~ly~~~~haf~Ps~fK~tIG~fn~~fsGy~QQDSqEFiaflLDgLHEdLnRI~~Kp 380 (823)
T COG5560 301 ESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKP 380 (823)
T ss_pred hhhcccCccchhhhHHHHHHHHHHHHhCccccccChHHHHHHHhhhHHHhcCccchhHHHHHHHHHHHHHHHHHHhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCC---ChHHHHHHHHHHhhccCCCcceeccceEEEEEEEcCCCCCeeeeecCceeEEEeCCCCceeeEEEEE
Q 002773 396 YAEAKDGDGR---SDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTV 472 (882)
Q Consensus 396 ~~~~~~~~~~---~~~~~a~~~w~~~~~~n~Sii~dlF~G~~~s~i~C~~C~~~s~~~e~f~~LsLplp~~~~~~~~v~~ 472 (882)
|.+.++-... ..+..|+++|..|++||+|+|+|||+|.++||++|+.|+.+|++||||++|+||||....|.++|++
T Consensus 381 ytskPdL~~~d~~~vKk~a~ecW~~H~kRNdSiItdLFqgmyKSTL~Cp~C~~vsitfDPfmdlTLPLPvs~vw~htiv~ 460 (823)
T COG5560 381 YTSKPDLSPGDDVVVKKKAKECWWEHLKRNDSIITDLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVV 460 (823)
T ss_pred ccCCCCCCCcchHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhceeeccCcCceeeeecchhhccccCchhhcccccEEE
Confidence 9998864333 3456899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCCCCceEEEEEEecceeEEcccCCcc-cccccCCCCcEEEEEecCC
Q 002773 473 VNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAEIYNHQIIRYLEEPAD-SISLIRDDDQLVAYRLRKE 551 (882)
Q Consensus 473 ~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~-~l~~i~~~d~i~~ye~~~~ 551 (882)
||.+|...| +.+++.+.+++.+|++.+....|+.....+.+.++|..++++.++.... .+..|.+.|.+|.|+ .
T Consensus 461 fp~~g~~~p--l~iel~~sSt~~~lk~lv~~~~gk~gc~ei~v~~iy~g~~y~~l~~~dk~ll~~I~~~d~vylYe---~ 535 (823)
T COG5560 461 FPESGRRQP--LKIELDASSTIRGLKKLVDAEYGKLGCFEIKVMCIYYGGNYNMLEPADKVLLQDIPQTDFVYLYE---T 535 (823)
T ss_pred ECCCCCCCc--eEEEEeccchHHHHHHHHHHHhccCCccceeEEEEEeccchhhcchhhHHHHhhcCccceEEEee---c
Confidence 999998877 6778889999999999998888887777889999999999999987666 457899999999999 4
Q ss_pred CCCCCeEEEEeehhhhhhhcCCcCCCCcccCccE-EEEe-ccccChHHHHHHHHHHcCCcccCcccccCCCcCCCCchhh
Q 002773 552 NDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPL-VAKV-SYLAHGLDIRNLYLELLKPFCIPAKDTFNNNVTAGSTAIE 629 (882)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~-~~~~-~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 629 (882)
.++...++++|.+.+.. +.+..+||.|+ -..+ ..+.-..+|.+.+.+++......
T Consensus 536 ~~ngi~vpvvh~~~~~g------Yks~rlFg~pflqlnv~~~~~i~~kLvkE~~ell~~v~~k----------------- 592 (823)
T COG5560 536 NDNGIEVPVVHLRIEKG------YKSKRLFGDPFLQLNVLIKASIYDKLVKEFEELLVLVEMK----------------- 592 (823)
T ss_pred CCCCeEEEEEecccccc------ccchhhhCCcceEEEeecchhhHHHHHHHHHHHHHHHhhc-----------------
Confidence 44557899999866542 46778999996 2333 33333344433333332111000
Q ss_pred hhhccccc-cccCCCCCCCCCCCCCCCCCCCceeeEEecCCCCccccccccCcccccCCCCCceEEEEEecchhhh-hhc
Q 002773 630 EVTRIVDN-VPVTGGVATPSSVKEVEPPSDAELQFYLTDEKGIVKNSKIVMNEPIAMTGVPEEVHVLVCWSGKLIE-QYD 707 (882)
Q Consensus 630 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~-~~~ 707 (882)
.+|.+.. .+..-...++ . ..+-|....+. .....++..++.+ .+......|.|+|...... .|.
T Consensus 593 -~tdvd~~~~q~~l~r~es-------~---p~~wl~l~tei-d~kree~veeE~~--~n~nd~vvi~cew~ek~y~~lFs 658 (823)
T COG5560 593 -KTDVDLVSEQVRLLREES-------S---PSSWLKLETEI-DTKREEQVEEEGQ--MNFNDAVVISCEWEEKRYLSLFS 658 (823)
T ss_pred -chhhhhhhhhccchhccc-------C---cchhhhhhhhc-cchhhhhhhhhhc--cCCCcceEEeeeccccchhhhhc
Confidence 0000000 0000000000 0 00000000000 0000000001111 1234567788999988665 342
Q ss_pred cccccccccccccCCCCCCCCCCCCHHHHHHHhhCcCcCCCCCCCCCCCCcCcceeEEEEEecccCCeEEEEEeceEeec
Q 002773 708 TRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSR 787 (882)
Q Consensus 708 ~~~~~~~~~~~k~~~~~~~~~~~isL~dcL~~f~~~E~L~~~d~w~C~~Ck~~~~A~K~~~i~~lP~iLiIhLKRF~~~~ 787 (882)
+ ..+.-..+.+. ..+.+||+|||+.|.++|.|+..|.||||.||++++|+|+++||++|.|||||||||++.+
T Consensus 659 --y-~~lw~~~ei~~----~~rtiTL~dCl~eFskpEqLgl~DswyCpgCkefrqasKqmelwrlP~iLiihLkRFss~r 731 (823)
T COG5560 659 --Y-DPLWTIREIGA----AERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVR 731 (823)
T ss_pred --C-CccchhHHhhh----ccCCCcHHHHHHHhccHhhcCCcccccCCchHhhhhhhhhhhhhcCChheeeehhhhhhcc
Confidence 0 00000111111 1368999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccceeeecccCCCCccccccccCCccCceeeEEEEEEeeccCCCceEEEEEEc-CCCCEEEEcCCcceeeCccccC
Q 002773 788 FSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMGGGHYTAFVHH-GGGQWYDFDDSHVYPISQDKIK 866 (882)
Q Consensus 788 ~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~aVi~H~G~l~gGHYtAy~k~-~~~~Wy~fnDs~V~~v~~~~v~ 866 (882)
.+++||++.|.|||.+|||+.|+....+ ....|+||||.||||++||||||||+|| .+++||+|||++|+++.+++.+
T Consensus 732 sfrdKiddlVeyPiddldLs~~~~~~~~-p~liydlyavDNHygglsgGHYtAyarn~~n~~wy~fdDsritevdped~v 810 (823)
T COG5560 732 SFRDKIDDLVEYPIDDLDLSGVEYMVDD-PRLIYDLYAVDNHYGGLSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSV 810 (823)
T ss_pred cchhhhhhhhccccccccccceEEeecC-cceEEEeeeccccccccCCcceeeeeecccCCceEEecCccccccCccccc
Confidence 9999999999999999999999987755 4499999999999999999999999999 6679999999999999999999
Q ss_pred CCCcEEEEEEEec
Q 002773 867 TSAAYVLFYRRVV 879 (882)
Q Consensus 867 s~~AYvLFY~R~~ 879 (882)
+++||||||+|+.
T Consensus 811 tssaYvLFyrrk~ 823 (823)
T COG5560 811 TSSAYVLFYRRKS 823 (823)
T ss_pred cceeEEEEEEecC
Confidence 9999999999973
|
|
| >KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02663 Peptidase_C19G A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02671 Peptidase_C19O A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02660 Peptidase_C19D A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02668 Peptidase_C19L A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02669 Peptidase_C19M A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02667 Peptidase_C19K A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02664 Peptidase_C19H A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02657 Peptidase_C19A A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02658 Peptidase_C19B A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02661 Peptidase_C19E A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02659 peptidase_C19C A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02662 Peptidase_C19F A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02674 Peptidase_C19R A subfamily of peptidase C19 | Back alignment and domain information |
|---|
| >cd02673 Peptidase_C19Q A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02665 Peptidase_C19I A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
| >KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02666 Peptidase_C19J A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
|---|
| >cd02672 Peptidase_C19P A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02670 Peptidase_C19N A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF06337 DUSP: DUSP domain; InterPro: IPR006615 Deubiquitinating enzymes (DUB) form a large family of cysteine protease that can deconjugate ubiquitin or ubiquitin-like proteins (see PDOC00271 from PROSITEDOC) from ubiquitin-conjugated proteins | Back alignment and domain information |
|---|
| >smart00695 DUSP Domain in ubiquitin-specific proteases | Back alignment and domain information |
|---|
| >PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A | Back alignment and domain information |
|---|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A | Back alignment and domain information |
|---|
| >KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase | Back alignment and domain information |
|---|
| >PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A | Back alignment and domain information |
|---|
| >PTZ00044 ubiquitin; Provisional | Back alignment and domain information |
|---|
| >cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain | Back alignment and domain information |
|---|
| >cd01807 GDX_N ubiquitin-like domain of GDX | Back alignment and domain information |
|---|
| >cd01799 Hoil1_N Ubiquitin-like domain of HOIL1 | Back alignment and domain information |
|---|
| >cd01806 Nedd8 Nebb8-like ubiquitin protein | Back alignment and domain information |
|---|
| >cd01763 Sumo Small ubiquitin-related modifier (SUMO) | Back alignment and domain information |
|---|
| >cd01803 Ubiquitin Ubiquitin | Back alignment and domain information |
|---|
| >cd01812 BAG1_N Ubiquitin-like domain of BAG1 | Back alignment and domain information |
|---|
| >cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B | Back alignment and domain information |
|---|
| >cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2 | Back alignment and domain information |
|---|
| >cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein | Back alignment and domain information |
|---|
| >cd01795 USP48_C USP ubiquitin-specific protease | Back alignment and domain information |
|---|
| >PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade | Back alignment and domain information |
|---|
| >cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein | Back alignment and domain information |
|---|
| >cd01809 Scythe_N Ubiquitin-like domain of Scythe protein | Back alignment and domain information |
|---|
| >cd01793 Fubi Fubi ubiquitin-like protein | Back alignment and domain information |
|---|
| >cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2 | Back alignment and domain information |
|---|
| >PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast | Back alignment and domain information |
|---|
| >cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120 | Back alignment and domain information |
|---|
| >cd01802 AN1_N ubiquitin-like domain of AN1 | Back alignment and domain information |
|---|
| >cd01805 RAD23_N Ubiquitin-like domain of RAD23 | Back alignment and domain information |
|---|
| >cd01791 Ubl5 UBL5 ubiquitin-like modifier | Back alignment and domain information |
|---|
| >cd01804 midnolin_N Ubiquitin-like domain of midnolin | Back alignment and domain information |
|---|
| >cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF | Back alignment and domain information |
|---|
| >cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2 | Back alignment and domain information |
|---|
| >smart00166 UBX Domain present in ubiquitin-regulatory proteins | Back alignment and domain information |
|---|
| >cd01813 UBP_N UBP ubiquitin processing protease | Back alignment and domain information |
|---|
| >PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway | Back alignment and domain information |
|---|
| >PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins | Back alignment and domain information |
|---|
| >smart00213 UBQ Ubiquitin homologues | Back alignment and domain information |
|---|
| >cd01767 UBX UBX (ubiquitin regulatory X) domain | Back alignment and domain information |
|---|
| >cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain | Back alignment and domain information |
|---|
| >PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
| >cd01769 UBL Ubiquitin-like domain of UBL | Back alignment and domain information |
|---|
| >cd01771 Faf1_UBX Faf1 UBX domain | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 882 | ||||
| 2y6e_A | 367 | Ubiquitin Specific Protease 4 Is Inhibited By Its U | 4e-63 | ||
| 2y6e_A | 367 | Ubiquitin Specific Protease 4 Is Inhibited By Its U | 2e-43 | ||
| 3n3k_A | 396 | The Catalytic Domain Of Usp8 In Complex With A Usp8 | 4e-40 | ||
| 3n3k_A | 396 | The Catalytic Domain Of Usp8 In Complex With A Usp8 | 5e-30 | ||
| 2gfo_A | 396 | Structure Of The Catalytic Domain Of Human Ubiquiti | 1e-37 | ||
| 2gfo_A | 396 | Structure Of The Catalytic Domain Of Human Ubiquiti | 4e-30 | ||
| 3nhe_A | 348 | High Resolution Structure (1.26a) Of Usp2a In Compl | 5e-33 | ||
| 3nhe_A | 348 | High Resolution Structure (1.26a) Of Usp2a In Compl | 1e-25 | ||
| 2hd5_A | 359 | Usp2 In Complex With Ubiquitin Length = 359 | 6e-33 | ||
| 2hd5_A | 359 | Usp2 In Complex With Ubiquitin Length = 359 | 9e-26 | ||
| 3v6c_A | 367 | Crystal Structure Of Usp2 In Complex With Mutated U | 7e-33 | ||
| 3v6c_A | 367 | Crystal Structure Of Usp2 In Complex With Mutated U | 1e-25 | ||
| 2ibi_A | 374 | Covalent Ubiquitin-Usp2 Complex Length = 374 | 8e-33 | ||
| 2ibi_A | 374 | Covalent Ubiquitin-Usp2 Complex Length = 374 | 2e-25 | ||
| 3mtn_A | 373 | Usp21 In Complex With A Ubiquitin-based, Usp21-spec | 1e-24 | ||
| 3i3t_A | 355 | Crystal Structure Of Covalent Ubiquitin-usp21 Compl | 1e-24 | ||
| 2y5b_A | 370 | Structure Of Usp21 In Complex With Linear Diubiquit | 1e-24 | ||
| 4fip_A | 476 | Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta- | 1e-17 | ||
| 3mhh_A | 476 | Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE | 1e-17 | ||
| 3m99_A | 471 | Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Mod | 1e-17 | ||
| 1nb8_A | 353 | Structure Of The Catalytic Domain Of Usp7 (Hausp) L | 2e-05 | ||
| 1nbf_A | 353 | Crystal Structure Of A Ubp-Family Deubiquitinating | 3e-05 | ||
| 2f1z_A | 522 | Crystal Structure Of Hausp Length = 522 | 5e-05 |
| >pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367 | Back alignment and structure |
|
| >pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367 | Back alignment and structure |
| >pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396 | Back alignment and structure |
| >pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396 | Back alignment and structure |
| >pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396 | Back alignment and structure |
| >pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396 | Back alignment and structure |
| >pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348 | Back alignment and structure |
| >pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348 | Back alignment and structure |
| >pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359 | Back alignment and structure |
| >pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359 | Back alignment and structure |
| >pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367 | Back alignment and structure |
| >pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367 | Back alignment and structure |
| >pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374 | Back alignment and structure |
| >pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374 | Back alignment and structure |
| >pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 373 | Back alignment and structure |
| >pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex Length = 355 | Back alignment and structure |
| >pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370 | Back alignment and structure |
| >pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta-Znf)SUS1SGF73 Dub Module Length = 476 | Back alignment and structure |
| >pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE Length = 476 | Back alignment and structure |
| >pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module Length = 471 | Back alignment and structure |
| >pdb|1NB8|A Chain A, Structure Of The Catalytic Domain Of Usp7 (Hausp) Length = 353 | Back alignment and structure |
| >pdb|1NBF|A Chain A, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme In Isolation And In Complex With Ubiquitin Aldehyde Length = 353 | Back alignment and structure |
| >pdb|2F1Z|A Chain A, Crystal Structure Of Hausp Length = 522 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396 | Back alignment and structure |
|---|
Score = 296 bits (758), Expect = 3e-92
Identities = 98/222 (44%), Positives = 131/222 (59%), Gaps = 6/222 (2%)
Query: 249 HSNGSLTNGSFGIVRNSSITFSGRSGEAGCLGLTGLQNLGNTCFMNSALQCLVHTPKLVD 308
+ ++ S +RN + F G LTGL+NLGNTC+MNS LQCL + P L D
Sbjct: 35 YPKAEISRLSASQIRNLNPVFGGSGP-----ALTGLRNLGNTCYMNSILQCLCNAPHLAD 89
Query: 309 YFL-GDYFREINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRTFKSKLARFAPQFSG 367
YF Y +IN N LG GE+A FG +++ LW +SP+ FK + + QF+G
Sbjct: 90 YFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGKINDQFAG 149
Query: 368 FNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIV 427
++Q DSQELL FL+DGLHEDLN+ + + ++ D D A+ WQ H N+SIIV
Sbjct: 150 YSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIV 209
Query: 428 DLCQGQYKSTLVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMT 469
L QGQ+KST+ C C K S TF+ FMYLSLPL ST+ +
Sbjct: 210 ALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQ 251
|
| >2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396 | Back alignment and structure |
|---|
| >2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 | Back alignment and structure |
|---|
| >2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 | Back alignment and structure |
|---|
| >3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348 | Back alignment and structure |
|---|
| >3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348 | Back alignment and structure |
|---|
| >3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 | Back alignment and structure |
|---|
| >3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 | Back alignment and structure |
|---|
| >2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 | Back alignment and structure |
|---|
| >2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 | Back alignment and structure |
|---|
| >3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476 | Back alignment and structure |
|---|
| >3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476 | Back alignment and structure |
|---|
| >1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353 | Back alignment and structure |
|---|
| >1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353 | Back alignment and structure |
|---|
| >2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 | Back alignment and structure |
|---|
| >2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 | Back alignment and structure |
|---|
| >3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 | Back alignment and structure |
|---|
| >3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 | Back alignment and structure |
|---|
| >3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 | Back alignment and structure |
|---|
| >3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus} Length = 231 | Back alignment and structure |
|---|
| >1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 | Back alignment and structure |
|---|
| >1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 | Back alignment and structure |
|---|
| >1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 | Back alignment and structure |
|---|
| >4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A Length = 217 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens} Length = 530 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 882 | ||||
| d2gfoa1 | 348 | d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h | 4e-43 | |
| d2gfoa1 | 348 | d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h | 3e-36 | |
| d2hd5a1 | 336 | d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy | 6e-39 | |
| d2hd5a1 | 336 | d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy | 2e-35 | |
| d2ayna1 | 383 | d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy | 3e-35 | |
| d2ayna1 | 383 | d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy | 2e-21 | |
| d1vjva_ | 397 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 1e-20 | |
| d1vjva_ | 397 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 2e-18 | |
| d1nbfa_ | 347 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 2e-20 | |
| d1nbfa_ | 347 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 2e-20 | |
| d1w6va1 | 120 | d.324.1.1 (A:1-120) Ubiquitin carboxyl-terminal hy | 0.002 |
| >d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Ubiquitin carboxyl-terminal hydrolase, UCH domain: Ubiquitin carboxyl-terminal hydrolase 8 species: Human (Homo sapiens) [TaxId: 9606]
Score = 158 bits (399), Expect = 4e-43
Identities = 91/182 (50%), Positives = 118/182 (64%), Gaps = 1/182 (0%)
Query: 280 GLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGD-YFREINHDNPLGMDGEIALAFGDLL 338
LTGL+NLGNTC+MNS LQCL + P L DYF + Y +IN N LG GE+A FG ++
Sbjct: 14 ALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIM 73
Query: 339 RKLWAPGAAPVSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAE 398
+ LW +SP+ FK + + QF+G++Q DSQELL FL+DGLHEDLN+ + +
Sbjct: 74 KALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYK 133
Query: 399 AKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVCPVCKKVSVTFDPFMYLSL 458
++ D D A+ WQ H N+SIIV L QGQ+KST+ C C K S TF+ FMYLSL
Sbjct: 134 EENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSL 193
Query: 459 PL 460
PL
Sbjct: 194 PL 195
|
| >d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 | Back information, alignment and structure |
|---|
| >d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336 | Back information, alignment and structure |
|---|
| >d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336 | Back information, alignment and structure |
|---|
| >d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383 | Back information, alignment and structure |
|---|
| >d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383 | Back information, alignment and structure |
|---|
| >d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 | Back information, alignment and structure |
|---|
| >d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 | Back information, alignment and structure |
|---|
| >d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
| >d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
| >d1w6va1 d.324.1.1 (A:1-120) Ubiquitin carboxyl-terminal hydrolase 15 {Human (Homo sapiens) [TaxId: 9606]} Length = 120 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 882 | |||
| d1nbfa_ | 347 | Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU | 100.0 | |
| d2gfoa1 | 348 | Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho | 100.0 | |
| d2ayna1 | 383 | Ubiquitin carboxyl-terminal hydrolase 14 {Human (H | 100.0 | |
| d2hd5a1 | 336 | Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum | 100.0 | |
| d1vjva_ | 397 | Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y | 100.0 | |
| d1w6va1 | 120 | Ubiquitin carboxyl-terminal hydrolase 15 {Human (H | 99.89 | |
| d1wjna_ | 97 | Tubulin-folding protein TbcE {Mouse (Mus musculus) | 95.36 | |
| d1j8ca_ | 103 | Ubiquitin-like N-terminal domain of PLIC-2 {Human | 95.21 | |
| d1t0ya_ | 90 | Ubiquitin-like domain of tubulin folding cofactor | 95.02 | |
| d1yqba1 | 84 | Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} | 94.86 | |
| d1v6ea_ | 95 | Ubiquitin-like domain of tubulin folding cofactor | 94.44 | |
| d1v86a_ | 95 | hypothetical D7wsu128e protein {Mouse (Mus musculu | 93.54 | |
| d2c9wb1 | 103 | Elongin B {Human (Homo sapiens) [TaxId: 9606]} | 93.34 | |
| d1we6a_ | 111 | Splicing factor 3 subunit 1, C-terminal domain {Th | 92.66 | |
| d1wx8a1 | 83 | 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090] | 92.24 | |
| d1euvb_ | 79 | SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy | 92.18 | |
| d1v5oa_ | 102 | 1700011n24rik protein {Mouse (Mus musculus) [TaxId | 91.98 | |
| d2bwfa1 | 73 | DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 91.88 | |
| d1wxva1 | 81 | Bag-family molecular chaperone regulator-1 {Human | 90.97 | |
| d1zkha1 | 86 | Splicing factor 3 subunit 1, C-terminal domain {Hu | 90.47 | |
| d1uh6a_ | 100 | Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu | 90.08 | |
| d1ogwa_ | 76 | Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} | 89.67 | |
| d1v5ta_ | 90 | 8430435i17rik protein {Mouse (Mus musculus) [TaxId | 89.54 | |
| d1z2ma2 | 76 | Interferon-induced 15 kDa protein {Human (Homo sap | 89.54 | |
| d1m94a_ | 73 | Ubiquitin-like modifier protein hub1 {Baker's yeas | 89.53 | |
| d1wh3a_ | 87 | 2'-5'-oligoadenylate synthetase-like protein, OASL | 89.49 | |
| d1wjua_ | 100 | NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens | 89.16 | |
| d2zeqa1 | 78 | Ubiquitin-like domain of parkin {Mouse (Mus muscul | 88.39 | |
| d1bt0a_ | 73 | Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI | 88.15 | |
| d1ttna1 | 80 | Dendritic cell-derived ubiquitin-like protein {Hum | 86.43 | |
| d1h8ca_ | 82 | Fas-associated factor 1, Faf1 {Human (Homo sapiens | 85.04 | |
| d1wgha_ | 116 | Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu | 83.4 | |
| d1z2ma1 | 76 | Interferon-induced 15 kDa protein {Human (Homo sap | 83.03 | |
| d2uyzb1 | 77 | SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax | 82.93 | |
| d1v2ya_ | 105 | Ubiquitin-like protein 3300001g02rik {Mouse (Mus m | 82.87 | |
| d1wj4a_ | 124 | Hypothetical protein KIAA0794 {Human (Homo sapiens | 82.35 | |
| d1wy8a1 | 76 | Ubiquitin-like PHD and RING finger domain-containi | 81.46 | |
| d1i42a_ | 89 | p47 {Rat (Rattus norvegicus) [TaxId: 10116]} | 80.31 | |
| d1wgga_ | 96 | Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M | 80.19 |
| >d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Ubiquitin carboxyl-terminal hydrolase, UCH domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=473.47 Aligned_cols=296 Identities=26% Similarity=0.426 Sum_probs=253.0
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 77744321388964178999998187479999971232223789999990689999999999961999998893999999
Q 002773 278 CLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRTFKSK 357 (882)
Q Consensus 278 ~~g~~GL~NlGNTCymNS~LQ~L~~~p~l~~~fl~~~~~~~n~~n~l~~~g~l~~~~~~Ll~~l~~~~~~~i~p~~~k~~ 357 (882)
.+|.+||.|+||||||||+||||+++|+|+++++..... .......+..+++.|+..|+.+. .++.|..+...
T Consensus 3 ~~G~vGL~NlGNTCy~NSvLQ~L~~~~~f~~~i~~~~~~------~~~~~~~~~~~l~~lf~~l~~~~-~~~~~~~~~~~ 75 (347)
T d1nbfa_ 3 HTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTE------GDDSSKSVPLALQRVFYELQHSD-KPVGTKKLTKS 75 (347)
T ss_dssp SSSCCCBCCCSSCHHHHHHHHHHHTSHHHHHHHHTSCCT------TCCTTTCHHHHHHHHHHHHHHCS-SCBCCHHHHHH
T ss_pred CCCCCCCEECCCCHHHHHHHHHHHCCHHHHHHHHHCCCC------CCCCCCHHHHHHHHHHHHHHCCC-CCCCHHHHHHH
T ss_conf 999729863996569999999998479999999707766------88641269999999999986579-97571999976
Q ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEECCCEEEEEE
Q ss_conf 95309998999988889999999999999832103788753469999991899999999742167984110366399989
Q 002773 358 LARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKST 437 (882)
Q Consensus 358 i~~~~~~F~g~~QqDaqEfL~~LLd~Lhedlnri~~kpy~e~~d~dg~~d~~~a~e~w~~~~~rndSiI~dlF~G~~kSt 437 (882)
++ .+.|.++.|||||||+.+|||.||+++... ...++|.++|+|++.++
T Consensus 76 ~~--~~~~~~~~qqDa~Ef~~~ll~~l~~~~~~~-----------------------------~~~~~i~~lF~g~~~~~ 124 (347)
T d1nbfa_ 76 FG--WETLDSFMQHDVQELCRVLLDNVENKMKGT-----------------------------CVEGTIPKLFRGKMVSY 124 (347)
T ss_dssp TT--CCGGGGGSCBCHHHHHHHHHHHHHHHHTTS-----------------------------TTTTHHHHHHCEEEEEE
T ss_pred HC--HHHCCHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------------CCCCCCCCEECEEEEEE
T ss_conf 23--000206778779999999999888887503-----------------------------33456550113478986
Q ss_pred EECCCCCCEEEEECCCEEEEEECCCCCEEEEEEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 99089998443104762388718998400379999908999988213898079999899999999882379886099999
Q 002773 438 LVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAE 517 (882)
Q Consensus 438 l~C~~C~~~SvtfdpF~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e 517 (882)
+.|+.|++.+.++++|+.|+|++|..
T Consensus 125 ~~C~~C~~~s~~~e~f~~l~L~i~~~------------------------------------------------------ 150 (347)
T d1nbfa_ 125 IQCKEVDYRSDRREDYYDIQLSIKGK------------------------------------------------------ 150 (347)
T ss_dssp EEESSSCCEEEEEEEESSEEEECTTC------------------------------------------------------
T ss_pred EEECCCCCEEEEECCCCCCCCCCCCC------------------------------------------------------
T ss_conf 78078661422322322331011233------------------------------------------------------
Q ss_pred EECCEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHH
Q ss_conf 84452687124873323345889819999945789999739998401366651387679872248538999636668577
Q 002773 518 IYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVSYLAHGLD 597 (882)
Q Consensus 518 i~~~~~~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~ 597 (882)
T Consensus 151 -------------------------------------------------------------------------------- 150 (347)
T d1nbfa_ 151 -------------------------------------------------------------------------------- 150 (347)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCC
Q ss_conf 99999987088656865556887689983134331003553258998878898777999997301687459997446522
Q 002773 598 IRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEKGIVKNSKI 677 (882)
Q Consensus 598 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (882)
T Consensus 151 -------------------------------------------------------------------------------- 150 (347)
T d1nbfa_ 151 -------------------------------------------------------------------------------- 150 (347)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 35754334799971499997251135310111225662110258888999998899999998307676799898779788
Q 002773 678 VMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGC 757 (882)
Q Consensus 678 ~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~~CL~~f~~~E~L~~~d~w~C~~C 757 (882)
.++.+||..++.+|.+.+++.|.|+.|
T Consensus 151 -----------------------------------------------------~~~~~~l~~~~~~e~l~~~~~~~~~~~ 177 (347)
T d1nbfa_ 151 -----------------------------------------------------KNIFESFVDYVAVEQLDGDNKYDAGEH 177 (347)
T ss_dssp -----------------------------------------------------CBHHHHHHHHTCCEEECGGGCEECSTT
T ss_pred -----------------------------------------------------CCHHHHHHHHCCHHEECCCCCCCCCCC
T ss_conf -----------------------------------------------------310356776412022414310024567
Q ss_pred CCCCEEEEEEEECCCCCEEEEEEECEEEEC--CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCC
Q ss_conf 675202899983006984899971347404--312443225531467888655223357766741659999993011798
Q 002773 758 KKHCQASKKLDLWRLPEILVIHLKRFSYSR--FSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMGG 835 (882)
Q Consensus 758 k~~~~a~Kk~~i~~lP~iLiIhLKRF~~~~--~~~~Ki~~~V~FPi~~LDls~~~~~~~~~~~~~YdL~AVinH~G~l~g 835 (882)
..+.|.|+..|+++|+||+||||||.|.. ..+.|+++.|.|| +.|||++|+..........|+|+|||+|.|...+
T Consensus 178 -~~~~~~k~~~i~~lP~vL~i~l~Rf~~~~~~~~~~K~~~~v~fp-~~Ldl~~~~~~~~~~~~~~Y~L~~vI~H~G~~~~ 255 (347)
T d1nbfa_ 178 -GLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFP-EQLPLDEFLQKTDPKDPANYILHAVLVHSGDNHG 255 (347)
T ss_dssp -CEECEEEEEEEEECCSEEEEEEECEEEETTTTEEEECCCCCBCC-SEEECGGGBSSCCTTSCCEEEEEEEEEEEEETTE
T ss_pred -CCEECCEEEEEEECCCHHEEEEEEEEECCCCCCCCCCCCEEEEE-EEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCC
T ss_conf -63012178999826980047510013422357310157247645-4413465323333457644056799984587879
Q ss_pred CEEEEEEEC-CCCCEEEECCCCCEEECCCCCCC---------------CCCEEEEEEEECC
Q ss_conf 669999991-89989997599411308343579---------------9818999898057
Q 002773 836 GHYTAFVHH-GGGQWYDFDDSHVYPISQDKIKT---------------SAAYVLFYRRVVE 880 (882)
Q Consensus 836 GHYtAy~k~-~~~~Wy~fnDs~Vs~v~~~~v~~---------------~~AYiLFY~R~~~ 880 (882)
|||+||+++ .+++||.|||+.|+++++++|.. .+||||||+|++.
T Consensus 256 GHY~~~~~~~~~~~W~~fnD~~V~~v~~~ev~~~~~g~~~~~~~~~~~~~aYiLfY~r~~~ 316 (347)
T d1nbfa_ 256 GHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESK 316 (347)
T ss_dssp EEEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCCCSCCSTTTTEEEEEEEEEEGGG
T ss_pred CEEEEEEECCCCCEEEEEECCCEEECCHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCC
T ss_conf 9899806138999899998996089889999875158876554557789779999996372
|
| >d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1w6va1 d.324.1.1 (A:1-120) Ubiquitin carboxyl-terminal hydrolase 15 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
| >d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|