Citrus Sinensis ID: 002778
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 882 | 2.2.26 [Sep-21-2011] | |||||||
| Q8CCN5 | 928 | Breast carcinoma-amplifie | yes | no | 0.300 | 0.285 | 0.295 | 9e-31 | |
| Q9H6U6 | 928 | Breast carcinoma-amplifie | yes | no | 0.301 | 0.286 | 0.293 | 4e-30 | |
| Q8SY41 | 1122 | Breast carcinoma-amplifie | yes | no | 0.306 | 0.240 | 0.307 | 3e-28 | |
| Q4P4N1 | 453 | Autophagy-related protein | N/A | no | 0.166 | 0.324 | 0.315 | 3e-10 | |
| Q7SG97 | 310 | SVP1-like protein 2 OS=Ne | N/A | no | 0.112 | 0.319 | 0.336 | 1e-06 | |
| Q75F47 | 537 | Autophagy-related protein | yes | no | 0.285 | 0.469 | 0.236 | 1e-06 | |
| P43601 | 500 | Autophagy-related protein | yes | no | 0.277 | 0.49 | 0.231 | 3e-06 | |
| A7A258 | 500 | Autophagy-related protein | N/A | no | 0.277 | 0.49 | 0.231 | 3e-06 | |
| Q6FXC1 | 445 | SVP1-like protein 2 OS=Ca | yes | no | 0.100 | 0.2 | 0.327 | 3e-06 | |
| Q6FM63 | 505 | Autophagy-related protein | no | no | 0.285 | 0.499 | 0.221 | 4e-06 |
| >sp|Q8CCN5|BCAS3_MOUSE Breast carcinoma-amplified sequence 3 homolog OS=Mus musculus GN=Bcas3 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 136 bits (342), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 158/311 (50%), Gaps = 46/311 (14%)
Query: 63 VRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLT-YPVP 121
V YS ++ ++F++ + + C+ RI+ V L +I FD+ T KF V + YP P
Sbjct: 167 VDLYSLRTGEMVKSIQFKTPIYDLHCNKRILVVVLQEKIAAFDSCTFTKKFFVTSCYPCP 226
Query: 122 QLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSP-----QNLTPSGVSPS-TS 175
G N+ P+A+G RWLAYA N L+ + R Q+ T + +S + T
Sbjct: 227 --------GPNMN--PIALGSRWLAYAENKLIRCHQSRGGACGDNIQSYTATVLSAAKTL 276
Query: 176 PGGSSLVARYAMEHSKQFAAGLSKT-LSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMD 234
G ++V + + + +G+++ ++ +C + SP+ P + + D +
Sbjct: 277 KSGLTMVGKVVTQLTGTLPSGVTEDDVALHC-----NSRRSPLVPGIITVI------DTE 325
Query: 235 NAG---IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSC 291
G ++V +D + I++ F AH P+ + F+ SG LLVT G++ ++F+I+
Sbjct: 326 TVGEGQVLVSEDSDSDGIVAHFPAHEKPVCCMAFNTSGMLLVTTDTLGHDFHVFQIL--- 382
Query: 292 MRSGSGNHKYDWNSSHV---HLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 348
+ W+SS HLY LHRG T A +QDICFSH +W+ + + +GT HVF +
Sbjct: 383 --------THPWSSSQCAVHHLYTLHRGETEAKVQDICFSHDCRWVVVSTLRGTSHVFPI 434
Query: 349 SPFGGDSGFQT 359
+P+GG +T
Sbjct: 435 NPYGGQPCVRT 445
|
Mus musculus (taxid: 10090) |
| >sp|Q9H6U6|BCAS3_HUMAN Breast carcinoma-amplified sequence 3 OS=Homo sapiens GN=BCAS3 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 134 bits (336), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 155/310 (50%), Gaps = 44/310 (14%)
Query: 63 VRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLT-YPVP 121
V YS ++ ++F++ + + C+ RI+ V L +I FD+ T KF V + YP P
Sbjct: 167 VDLYSLRTGEMVKSIQFKTPIYDLHCNKRILVVVLQEKIAAFDSCTFTKKFFVTSCYPCP 226
Query: 122 QLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSP-----QNLTPSGVSPS-TS 175
G N+ P+A+G RWLAYA N L+ + R Q+ T + +S + T
Sbjct: 227 --------GPNMN--PIALGSRWLAYAENKLIRCHQSRGGACGDNIQSYTATVISAAKTL 276
Query: 176 PGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDN 235
G ++V + + + +G+++ + + SP+ P + + D +
Sbjct: 277 KSGLTMVGKVVTQLTGTLPSGVTEDDVA----IHSNSRRSPLVPGIITVI------DTET 326
Query: 236 AG---IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM 292
G ++V +D + I++ F AH P+ + F+ SG LLVT G++ ++F+I+
Sbjct: 327 VGEGQVLVSEDSDSDGIVAHFPAHEKPVCCMAFNTSGMLLVTTDTLGHDFHVFQIL---- 382
Query: 293 RSGSGNHKYDWNSSHV---HLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 349
+ W+SS HLY LHRG T A +QDICFSH +W+ + + +GT HVF ++
Sbjct: 383 -------THPWSSSQCAVHHLYTLHRGETEAKVQDICFSHDCRWVVVSTLRGTSHVFPIN 435
Query: 350 PFGGDSGFQT 359
P+GG +T
Sbjct: 436 PYGGQPCVRT 445
|
Homo sapiens (taxid: 9606) |
| >sp|Q8SY41|BCAS3_DROME Breast carcinoma-amplified sequence 3 homolog OS=Drosophila melanogaster GN=CG43154 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 101/328 (30%), Positives = 156/328 (47%), Gaps = 58/328 (17%)
Query: 61 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLT-YP 119
+AV F S ++ ++F+++V ++ + V + +I FDA TLE++ ++ T YP
Sbjct: 229 SAVNFMSLKTGVQVKTIKFKNAVLDIQANRSAVVITFHERIAVFDARTLEDRLTITTCYP 288
Query: 120 VPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSN-SGRLSPQNLTPSGVSPSTSPGG 178
P GIN P+A+GPRWLAYA + LL S SG PS + T
Sbjct: 289 SP--------GINPN--PIALGPRWLAYAEHKLLHSKRSGGGCDGEGVPSYTA--TVLNA 336
Query: 179 SSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGI 238
+ +++ E +Q AAGL+ T + S G D +G+
Sbjct: 337 AKSLSKGLREFGEQVAAGLTGTTAGSGASS-----------KSSSFDSASGGPDAKQSGV 385
Query: 239 VV-------VKDFVTRA----------------IISQFKAHTSPISALCFDPSGTLLVTA 275
V VKD+ + I++ F AH+ + A+ FD SG LL+TA
Sbjct: 386 VTIIDVKHPVKDYSPTSGTPLSSTAGSQGGGDPIVAHFVAHSEALVAMEFDSSGMLLLTA 445
Query: 276 SVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH-LYKLHRGITSATIQDICFSHYSQWI 334
G++ ++FR+ P H + + VH LY LHRG TSA +Q I FS S+W
Sbjct: 446 DRRGHDFHVFRVQP---------HPVGPSLAAVHHLYVLHRGDTSAKVQHIAFSLDSRWA 496
Query: 335 AIVSSKGTCHVFVLSPFGGDSGFQTLSS 362
A+ + +GT HVF ++P+GG G +T +S
Sbjct: 497 AVSTLRGTTHVFPITPYGGAMGVRTHTS 524
|
Drosophila melanogaster (taxid: 7227) |
| >sp|Q4P4N1|ATG18_USTMA Autophagy-related protein 18 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=ATG18 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 78/165 (47%), Gaps = 18/165 (10%)
Query: 202 SKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPIS 261
S+ C P +SP SP S A A+ AG V++ D ++ ++ + +AH +PIS
Sbjct: 152 SENCFLAYPSPVASPTSPFSNSGASSSAEANT-TAGDVLIFDLLSLSVTNVIQAHKTPIS 210
Query: 262 ALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSAT 321
AL + +GTLL TAS G I +F I P+ + L++ RG +A
Sbjct: 211 ALALNATGTLLATASDKGTVIRVFSI-PAAQK----------------LHQFRRGSYAAR 253
Query: 322 IQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGD 366
I + F+ S +A+ S T H+F LS G SS GG+
Sbjct: 254 IYSLNFNAVSTLLAVSSDTETVHIFKLSSGAGAGAKGRSSSNGGE 298
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Required for cytoplasm to vacuole transport (Cvt) vesicle formation, pexophagy and autophagy. Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631) |
| >sp|Q7SG97|HSV2_NEUCR SVP1-like protein 2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=hsv-2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 55/119 (46%), Gaps = 20/119 (16%)
Query: 250 ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 309
+S AHTS + A+ G LL TAS G I ++ +C R
Sbjct: 54 VSIITAHTSALRAMALSQDGELLATASEMGTIIRVY-ATSNCAR---------------- 96
Query: 310 LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPY 368
LY+L RGI A I I FS +++A S K T HVF ++ GG + ++S GG Y
Sbjct: 97 LYELRRGIDKAIIFSIGFSPSGKYLACTSDKSTLHVFDVTRPGGT---RPITSNGGTAY 152
|
Involved in mitochondrial or peroxisomal functions and amino acid signaling pathways. Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110) |
| >sp|Q75F47|ATG18_ASHGO Autophagy-related protein 18 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=ATG18 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 71/300 (23%), Positives = 118/300 (39%), Gaps = 48/300 (16%)
Query: 59 SPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTY 118
SP +R + + H + F +++ V+ + + V L QIY +D ++ +++ T
Sbjct: 72 SPRRLRILNTKRHSVICEVTFPTTILAVKMNRSRLVVLLQEQIYIYDINSMRLLYTIETS 131
Query: 119 PVPQLAGQGAVGINVGYGPMAVGP----RWLAYASNTLLLSNSGRLSPQNLTPSGVSP-- 172
P+ G +++ P +LAY S ++ NSG S N G+S
Sbjct: 132 SNPR-------------GLISMSPSLENNYLAYPSPPKVI-NSGIKSNANTNNIGISARS 177
Query: 173 STSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGAD 232
S + GGS + + + AG K E + +SP G A
Sbjct: 178 SIAEGGSEYLDKGTEPLTDSSKAGADLNSVKASTE-------TTISPGKEHSAGSGLNAT 230
Query: 233 MDNA----GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM 288
+ G V+ + T +AH I+AL GTLL TAS G I +F +
Sbjct: 231 SSSGTVKNGDVIFFNLQTLQPTMVIEAHKGEIAALALSKDGTLLATASEKGTIIRVFSV- 289
Query: 289 PSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 348
+C + +Y+ RG I + FS ++++A SS T H+F L
Sbjct: 290 ETCTK----------------VYQFRRGTYPTRIYSLNFSDDNEFLAASSSNKTVHIFKL 333
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Required for cytoplasm to vacuole transport (Cvt) vesicle formation, pexophagy and autophagy. Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811) |
| >sp|P43601|ATG18_YEAST Autophagy-related protein 18 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ATG18 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/294 (23%), Positives = 118/294 (40%), Gaps = 49/294 (16%)
Query: 59 SPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTY 118
SP +R + + H + F +S+ V+ + + V L QIY +D T+ ++ T
Sbjct: 71 SPRRLRIINTKKHSIICEVTFPTSILSVKMNKSRLVVLLQEQIYIYDINTMRLLHTIETN 130
Query: 119 PVPQLAGQGAVGINVGYGPMAVGP----RWLAYASNTLLLSNSGRLSPQNLTPSGVSPST 174
P P+ G MA+ P +L Y S ++++ + + T + ++ S
Sbjct: 131 PNPR-------------GLMAMSPSVANSYLVYPSPPKVINSEIK---AHATTNNITLSV 174
Query: 175 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMD 234
+ R + + L + S + + D +SS +S+ K G
Sbjct: 175 GGNTETSFKRDQQDAGHSDISDLDQ-YSSFTKRDDADPTSSNGGNSSIIKNGD------- 226
Query: 235 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS 294
V+V + T +AH I+A+ GTL+ TAS G I +F I
Sbjct: 227 ----VIVFNLETLQPTMVIEAHKGEIAAMAISFDGTLMATASDKGTIIRVFDI------- 275
Query: 295 GSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 348
+G+ +Y+ RG + I I FS SQ++A+ S T H+F L
Sbjct: 276 ETGD----------KIYQFRRGTYATRIYSISFSEDSQYLAVTGSSKTVHIFKL 319
|
The PI(3,5)P2 regulatory complex regulates both the synthesis and turnover of phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2). May negatively regulate FAB1 activity by sequestering or masking VAC7 from FAB1. Necessary for proper vacuole morphology. Required for cytoplasm to vacuole transport (Cvt) vesicle formation, pexophagy and autophagy. Involved in correct ATG9 trafficking to the pre-autophagosomal structure. Might also be involved in premeiotic DNA replication. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|A7A258|ATG18_YEAS7 Autophagy-related protein 18 OS=Saccharomyces cerevisiae (strain YJM789) GN=ATG18 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/294 (23%), Positives = 118/294 (40%), Gaps = 49/294 (16%)
Query: 59 SPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTY 118
SP +R + + H + F +S+ V+ + + V L QIY +D T+ ++ T
Sbjct: 71 SPRRLRIINTKKHSIICEVTFPTSILSVKMNKSRLVVLLQEQIYIYDINTMRLLHTIETN 130
Query: 119 PVPQLAGQGAVGINVGYGPMAVGP----RWLAYASNTLLLSNSGRLSPQNLTPSGVSPST 174
P P+ G MA+ P +L Y S ++++ + + T + ++ S
Sbjct: 131 PNPR-------------GLMAMSPSVANSYLVYPSPPKVINSEIK---AHATTNNITLSV 174
Query: 175 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMD 234
+ R + + L + S + + D +SS +S+ K G
Sbjct: 175 GGNTETSFKRDQQDAGHSDISDLDQ-YSSFTKRDDADPTSSNGGNSSIIKNGD------- 226
Query: 235 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS 294
V+V + T +AH I+A+ GTL+ TAS G I +F I
Sbjct: 227 ----VIVFNLETLQPTMVIEAHKGEIAAMAISFDGTLMATASDKGTIIRVFDI------- 275
Query: 295 GSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 348
+G+ +Y+ RG + I I FS SQ++A+ S T H+F L
Sbjct: 276 ETGD----------KIYQFRRGTYATRIYSISFSEDSQYLAVTGSSKTVHIFKL 319
|
Required for cytoplasm to vacuole transport (Cvt) vesicle formation, pexophagy and autophagy. Involved in correct ATG9 trafficking to the pre-autophagosomal structure. Might also be involved in premeiotic DNA replication. Saccharomyces cerevisiae (strain YJM789) (taxid: 307796) |
| >sp|Q6FXC1|HSV2_CANGA SVP1-like protein 2 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=HSV2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 53/113 (46%), Gaps = 24/113 (21%)
Query: 242 KDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKY 301
+ F+ II KAH +PI + + GT++ TAS G I IF
Sbjct: 208 ESFLPTTII---KAHKAPIRNVRINNQGTMVATASRKGTLIRIF---------------- 248
Query: 302 DWNSSH--VHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 352
S+H + L + RG+ A I D+CFS +A+VS K T HVF ++P
Sbjct: 249 ---STHNGILLKEFRRGLDRAEIYDMCFSPLGTRLAVVSDKQTLHVFQIAPMA 298
|
Involved in mitochondrial or peroxisomal functions and amino acid signaling pathways. Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593) |
| >sp|Q6FM63|ATG18_CANGA Autophagy-related protein 18 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=ATG18 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 66/298 (22%), Positives = 116/298 (38%), Gaps = 46/298 (15%)
Query: 59 SPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTY 118
SP +R + + H + F + + V+ + + V L QIY +D + ++
Sbjct: 71 SPRRLRIINTKKHSIICEVTFPTKILSVKMNRSRIVVVLKEQIYIYDINNMRLLHTIEIA 130
Query: 119 PVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGG 178
P P+ G A+ N LAY S P +S +P
Sbjct: 131 PNPE--GLVALSCNTD-------TNLLAYPS----------------PPKVISSDINPNV 165
Query: 179 SSLVARYAMEHSKQFAAGL--SKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAG-ADMD- 234
++ A S++ A + +K+ L + + ++V ++ A+ D
Sbjct: 166 NTNTINIARSKSEELIANSKDNNLQNKFGTTLEGQQNIDEDKAANGYQVDQNTDTAENDI 225
Query: 235 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS 294
N+G V++ D T + +AH I+AL F G+L+ TAS G I +F
Sbjct: 226 NSGDVIIYDMSTLQPLMVIEAHKGEIAALNFSFDGSLIATASEKGTIIRVFS-------- 277
Query: 295 GSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 352
SS LY+ RG I + FS ++++++ S T H+F L+ G
Sbjct: 278 ---------TSSGAKLYQFRRGTYPTKIYSLSFSQDNRFLSVTCSSKTVHIFKLTKTG 326
|
Required for cytoplasm to vacuole transport (Cvt) vesicle formation, pexophagy and autophagy. Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 882 | ||||||
| 255567594 | 1016 | breast carcinoma amplified sequence, put | 0.995 | 0.864 | 0.669 | 0.0 | |
| 225436857 | 988 | PREDICTED: uncharacterized protein LOC10 | 0.976 | 0.871 | 0.639 | 0.0 | |
| 296086668 | 951 | unnamed protein product [Vitis vinifera] | 0.893 | 0.828 | 0.664 | 0.0 | |
| 147779793 | 1237 | hypothetical protein VITISV_008540 [Viti | 0.769 | 0.548 | 0.699 | 0.0 | |
| 356504886 | 979 | PREDICTED: uncharacterized protein LOC10 | 0.973 | 0.877 | 0.607 | 0.0 | |
| 356570542 | 950 | PREDICTED: uncharacterized protein LOC10 | 0.939 | 0.872 | 0.575 | 0.0 | |
| 359487960 | 986 | PREDICTED: uncharacterized protein LOC10 | 0.960 | 0.859 | 0.549 | 0.0 | |
| 449462290 | 967 | PREDICTED: uncharacterized protein LOC10 | 0.934 | 0.852 | 0.531 | 0.0 | |
| 297843152 | 958 | hypothetical protein ARALYDRAFT_333664 [ | 0.941 | 0.866 | 0.516 | 0.0 | |
| 240253994 | 959 | autophagy 18G-like protein [Arabidopsis | 0.930 | 0.856 | 0.512 | 0.0 |
| >gi|255567594|ref|XP_002524776.1| breast carcinoma amplified sequence, putative [Ricinus communis] gi|223535960|gb|EEF37619.1| breast carcinoma amplified sequence, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1154 bits (2985), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 604/902 (66%), Positives = 699/902 (77%), Gaps = 24/902 (2%)
Query: 1 MQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGV-RDGMMDSQSGNCVNS 59
MQPFP K DG E FR HP LLVVAG+DTN++ GQN HLGGV R+G M+SQ NC++S
Sbjct: 112 MQPFPSKSDGHERFRSSHPLLLVVAGDDTNSINVGQNPGHLGGVGREGNMESQPRNCISS 171
Query: 60 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYP 119
PT+VRFYS +SHCY HVLRFRS+V MVRCSPRI+AVGLATQIYC DALTLE+KFSVLTYP
Sbjct: 172 PTSVRFYSLRSHCYVHVLRFRSAVRMVRCSPRIIAVGLATQIYCIDALTLESKFSVLTYP 231
Query: 120 VPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPS-GVSPSTSPGG 178
VPQLAGQG GINVGYGPMAVGPRWLAYASN L+SN+ RLS Q+LTPS GVSPSTSPGG
Sbjct: 232 VPQLAGQG--GINVGYGPMAVGPRWLAYASNNPLVSNTTRLSAQSLTPSPGVSPSTSPGG 289
Query: 179 SSLVARYAMEHSKQFAAGL-------SKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGA 231
+SLVARYAME SKQ AAG+ KT SKYCQELLPDGS+SPVSP+S WKVGR AG+
Sbjct: 290 TSLVARYAMESSKQLAAGIINLGDMGYKTFSKYCQELLPDGSNSPVSPSSGWKVGRLAGS 349
Query: 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSC 291
DMD AG+VVVKDFV+R +ISQFKAHTSPISALCFDPSGTLLVTAS+YGNNINIFRIMPSC
Sbjct: 350 DMDTAGMVVVKDFVSRVVISQFKAHTSPISALCFDPSGTLLVTASIYGNNINIFRIMPSC 409
Query: 292 MRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351
R G G YDW+SSHVHLYKLHRG+TSA IQDICFSHYSQWIAIVSSKGTCHVFVLSPF
Sbjct: 410 SRGGLGVQSYDWSSSHVHLYKLHRGMTSAMIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 469
Query: 352 GGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGW 411
GGDSGFQ+L+S G +P L+P+LSLPWW TSS + QQ PPPPV+LSVVSRIKYSSFGW
Sbjct: 470 GGDSGFQSLNSMGVEPSLYPILSLPWWSTSSWMINQQPYPPPPPVSLSVVSRIKYSSFGW 529
Query: 412 LNTVSNASASSMG-KVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQH 470
LNTV NA+ S+ KVFVPSGAVAAVFHNSI S+QHVNSR N LEHLLVYTPSG+VVQH
Sbjct: 530 LNTVGNATGSAXSRKVFVPSGAVAAVFHNSICQSAQHVNSRANPLEHLLVYTPSGHVVQH 589
Query: 471 ELLPSIGMGPSDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATC 530
ELLPSIG+ + GS+I+ AS + +QEDD++V+VEPVQWWDVCRRSDW EREE + +T
Sbjct: 590 ELLPSIGLELGESGSKIQPASFVHIQEDDMKVKVEPVQWWDVCRRSDWSEREESVIGST- 648
Query: 531 DGHGAVEIFQNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSS 590
+G AVEI K E+N+ + FLD N + EK + + S+K +E+SHWYLSNAEVQ+SS
Sbjct: 649 NGQDAVEIITRKPSGENNFEMVFLDTNGDVNEKKSSISYSMKPHEKSHWYLSNAEVQISS 708
Query: 591 GRLPIWQSSKISFFKMDSPRANTHASGEFEIEKVSVHEVEIKRKELLPVFDHFQCIKPSW 650
RLPIWQ SKI F+ MDSPR N + GEFEIEKV + EVE+KRKELLPVFDHF K W
Sbjct: 709 VRLPIWQKSKICFYVMDSPRVN-YNDGEFEIEKVPIQEVELKRKELLPVFDHFHSFKSGW 767
Query: 651 NNRGLAEEKRPLSPSSGPYQAEDKIAQQTVICHSNPASLSSTESSEGGSSRRIENLLDLD 710
N+RG+A + SPSS +QAE K Q+T+ICHS PASLSST SSE GSSRRIENLLDLD
Sbjct: 768 NDRGIAVARYIHSPSSEAHQAEGKSTQETIICHSKPASLSSTGSSECGSSRRIENLLDLD 827
Query: 711 QVNNDKLYVPTGQTLNEIYNGRHEVTMVESSTLNKRCLDIVSTSPEHSENDNPHVNNHIP 770
Q+N +K Y+P QTLN+ Y ++S T+N+ L I S EH +N + V+N I
Sbjct: 828 QINCEKSYIPICQTLNDYYQETRGGPGLQSGTINQNSLTIASLPSEHPKNGDASVDNCIE 887
Query: 771 NGLPSLESNLPSAGRDDTIVA----------VSMLGADYYDSHMGIIMEDRALPLLSCPV 820
NGLPS + LP AGR A VS AD YDS + I+M ALP+ PV
Sbjct: 888 NGLPSSPNYLPPAGRIFAGEAPTLNIKRTGDVSASPADNYDSQINILMGVPALPVAENPV 947
Query: 821 NLGVSLREEHCKIVEQNGLCKSTDVVNDDINGGNSHCESKKLEEDAEDDEMLGGMFAFFE 880
+S +E H K ++ + C ST+VV DD++ +SHCE +K EED E+DE LGGMFAF E
Sbjct: 948 GFELSFQEGHYKALDLDRCCTSTEVVTDDVDSSSSHCEKEKPEEDGENDEFLGGMFAFSE 1007
Query: 881 EG 882
EG
Sbjct: 1008 EG 1009
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225436857|ref|XP_002270856.1| PREDICTED: uncharacterized protein LOC100245938 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1070 bits (2768), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 574/897 (63%), Positives = 677/897 (75%), Gaps = 36/897 (4%)
Query: 1 MQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGV-RDGMMDSQSGNCVNS 59
MQP P++ DG EGFR HP LLVVAG+++N L PGQN SH GG+ RDG DSQSGNC++S
Sbjct: 113 MQPIPLESDGHEGFRTSHPLLLVVAGDESNCLNPGQNHSHFGGLGRDGSSDSQSGNCISS 172
Query: 60 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYP 119
PTAVRFYS +S+CY HVLRFRS+VCMVRCSPRIVAVGLATQIYCFDALTL NKFSVLTYP
Sbjct: 173 PTAVRFYSLRSNCYVHVLRFRSAVCMVRCSPRIVAVGLATQIYCFDALTLGNKFSVLTYP 232
Query: 120 VPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPS-GVSPSTSPGG 178
VPQL GQG +G+NVGYGPM+VGPRWLAYASN LLSN GRL+PQNLTPS GVSPSTSPG
Sbjct: 233 VPQLGGQGTLGVNVGYGPMSVGPRWLAYASNNPLLSNRGRLNPQNLTPSPGVSPSTSPGS 292
Query: 179 SSLVARYAMEHSKQFAAGL-------SKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGA 231
SSLVARYAME SKQ AAG+ KTLSKY Q+LLPDGS+SP WKVG A A
Sbjct: 293 SSLVARYAMESSKQLAAGIINLGDMGYKTLSKYYQDLLPDGSNSPG-----WKVGGLAAA 347
Query: 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSC 291
+ DNAG+VV+KDFV+RA+ISQF+AHTSPISALCFDPSGTLLVTASV+GNNINIFRIMPSC
Sbjct: 348 ETDNAGMVVIKDFVSRAVISQFRAHTSPISALCFDPSGTLLVTASVHGNNINIFRIMPSC 407
Query: 292 MRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351
SGSG YDW+SSHVHLYKLHRG+T+A IQDI FSHYSQWI+IVSSKGTCHVFV+SPF
Sbjct: 408 TCSGSGCQSYDWSSSHVHLYKLHRGMTTAIIQDISFSHYSQWISIVSSKGTCHVFVISPF 467
Query: 352 GGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQCV-LPPPPVTLSVVSRIKYSSFG 410
GGD+GFQT +S G +P LFPVLSLPWW +SS I QQ PPPP TLSVVSRIK + G
Sbjct: 468 GGDAGFQTSNSHGEEPSLFPVLSLPWWFSSSCIINQQSFPAPPPPHTLSVVSRIKNCNAG 527
Query: 411 WLNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQH 470
WLNTVS A+AS+ GKV VPSGAVAAVFHNS++ S QHV++R NSLEHLLVYTPSG+V+QH
Sbjct: 528 WLNTVSIAAASATGKVLVPSGAVAAVFHNSLSQSPQHVHTRVNSLEHLLVYTPSGHVIQH 587
Query: 471 ELLPSIGMGPSDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATC 530
EL PS+G SD G+R + S +Q+++L+VRVEP+QWWDVCRRS+WPEREE +SE
Sbjct: 588 ELFPSMGAELSDGGTRTLSGSFRQIQDEELRVRVEPIQWWDVCRRSEWPEREECVSER-- 645
Query: 531 DGHGAVEIFQNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSS 590
+I +KSD ED+Y D L+I K+ SVK ERSHWYLSNAEVQ+SS
Sbjct: 646 --QKYAKIIVDKSDSEDSYRTDLLEI----------KSDSVKPLERSHWYLSNAEVQISS 693
Query: 591 GRLPIWQSSKISFFKMDSPRANTHASGEFEIEKVSVHEVEIKRKELLPVFDHFQCIKPSW 650
GR+PIW SKI F+ MD PR H GEFEIEK+ VHEVEI+RK+LLPVFDHF IK W
Sbjct: 694 GRIPIWHKSKICFYMMDPPRVKNHVGGEFEIEKLPVHEVEIRRKDLLPVFDHFHSIKSGW 753
Query: 651 NNRGLAEEKRPLSPSSGPYQAEDKIAQQTVICHSNPASLSSTESSEGGSSRRIENLLDLD 710
N+R LA P +PS +QA+D++ ++TVICHS PASLSSTESS+GGSSRRIENLLDLD
Sbjct: 754 NDRSLAGVSYPNAPSLESHQAKDRVTEETVICHSKPASLSSTESSDGGSSRRIENLLDLD 813
Query: 711 QVNNDKLYVPTGQTLNEIYNGRHEVTMVESSTLNKRCLDIVSTSPEHSENDNPHVNNHIP 770
Q++ +K Y+ T Q NE Y R E + E S + K + S+S E S+ + V+N I
Sbjct: 814 QMSGEKSYIRTCQIPNEFYQERRENAINEPSLIQKSSTTVSSSS-ERSKKIDSSVDNCIT 872
Query: 771 NGLPSLESNLPSAGRDDTIVAVSMLGADYYDSHMGIIME---DRALPL-LSCPVNLGVSL 826
N +PS ESNLPS GR A S+ + D M I M+ D + P + P++ L
Sbjct: 873 NAMPS-ESNLPSVGRTADKGACSLNTRETSDVTMRIAMDIPKDGSTPSNVLNPIDFAQFL 931
Query: 827 REEHCKIVEQNGLCKSTDVVNDDINGGNSHC-ESKKLEEDAEDDEMLGGMFAFFEEG 882
+E + K +E G + +VV DD+N SHC E+D E++EMLGG+FAF EEG
Sbjct: 932 KEGYHKTLELGGCRELAEVVTDDVNSSGSHCERENPEEDDEENNEMLGGIFAFSEEG 988
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296086668|emb|CBI32303.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1040 bits (2688), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 544/819 (66%), Positives = 633/819 (77%), Gaps = 31/819 (3%)
Query: 1 MQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGV-RDGMMDSQSGNCVNS 59
MQP P++ DG EGFR HP LLVVAG+++N L PGQN SH GG+ RDG DSQSGNC++S
Sbjct: 113 MQPIPLESDGHEGFRTSHPLLLVVAGDESNCLNPGQNHSHFGGLGRDGSSDSQSGNCISS 172
Query: 60 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYP 119
PTAVRFYS +S+CY HVLRFRS+VCMVRCSPRIVAVGLATQIYCFDALTL NKFSVLTYP
Sbjct: 173 PTAVRFYSLRSNCYVHVLRFRSAVCMVRCSPRIVAVGLATQIYCFDALTLGNKFSVLTYP 232
Query: 120 VPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPS-GVSPSTSPGG 178
VPQL GQG +G+NVGYGPM+VGPRWLAYASN LLSN GRL+PQNLTPS GVSPSTSPG
Sbjct: 233 VPQLGGQGTLGVNVGYGPMSVGPRWLAYASNNPLLSNRGRLNPQNLTPSPGVSPSTSPGS 292
Query: 179 SSLVARYAMEHSKQFAAGL-------SKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGA 231
SSLVARYAME SKQ AAG+ KTLSKY Q+LLPDGS+SP WKVG A A
Sbjct: 293 SSLVARYAMESSKQLAAGIINLGDMGYKTLSKYYQDLLPDGSNSPG-----WKVGGLAAA 347
Query: 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSC 291
+ DNAG+VV+KDFV+RA+ISQF+AHTSPISALCFDPSGTLLVTASV+GNNINIFRIMPSC
Sbjct: 348 ETDNAGMVVIKDFVSRAVISQFRAHTSPISALCFDPSGTLLVTASVHGNNINIFRIMPSC 407
Query: 292 MRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351
SGSG YDW+SSHVHLYKLHRG+T+A IQDI FSHYSQWI+IVSSKGTCHVFV+SPF
Sbjct: 408 TCSGSGCQSYDWSSSHVHLYKLHRGMTTAIIQDISFSHYSQWISIVSSKGTCHVFVISPF 467
Query: 352 GGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQCV-LPPPPVTLSVVSRIKYSSFG 410
GGD+GFQT +S G +P LFPVLSLPWW +SS I QQ PPPP TLSVVSRIK + G
Sbjct: 468 GGDAGFQTSNSHGEEPSLFPVLSLPWWFSSSCIINQQSFPAPPPPHTLSVVSRIKNCNAG 527
Query: 411 WLNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQH 470
WLNTVS A+AS+ GKV VPSGAVAAVFHNS++ S QHV++R NSLEHLLVYTPSG+V+QH
Sbjct: 528 WLNTVSIAAASATGKVLVPSGAVAAVFHNSLSQSPQHVHTRVNSLEHLLVYTPSGHVIQH 587
Query: 471 ELLPSIGMGPSDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATC 530
EL PS+G SD G+R + S +Q+++L+VRVEP+QWWDVCRRS+WPEREE +SE
Sbjct: 588 ELFPSMGAELSDGGTRTLSGSFRQIQDEELRVRVEPIQWWDVCRRSEWPEREECVSER-- 645
Query: 531 DGHGAVEIFQNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSS 590
+I +KSD ED+Y D L+I K+ SVK ERSHWYLSNAEVQ+SS
Sbjct: 646 --QKYAKIIVDKSDSEDSYRTDLLEI----------KSDSVKPLERSHWYLSNAEVQISS 693
Query: 591 GRLPIWQSSKISFFKMDSPRANTHASGEFEIEKVSVHEVEIKRKELLPVFDHFQCIKPSW 650
GR+PIW SKI F+ MD PR H GEFEIEK+ VHEVEI+RK+LLPVFDHF IK W
Sbjct: 694 GRIPIWHKSKICFYMMDPPRVKNHVGGEFEIEKLPVHEVEIRRKDLLPVFDHFHSIKSGW 753
Query: 651 NNRGLAEEKRPLSPSSGPYQAEDKIAQQTVICHSNPASLSSTESSEGGSSRRIENLLDLD 710
N+R LA P +PS +QA+D++ ++TVICHS PASLSSTESS+GGSSRRIENLLDLD
Sbjct: 754 NDRSLAGVSYPNAPSLESHQAKDRVTEETVICHSKPASLSSTESSDGGSSRRIENLLDLD 813
Query: 711 QVNNDKLYVPTGQTLNEIYNGRHEVTMVESSTLNKRCLDIVSTSPEHSENDNPHVNNHIP 770
Q++ +K Y+ T Q NE Y R E + E S + K + S+S E S+ + V+N I
Sbjct: 814 QMSGEKSYIRTCQIPNEFYQERRENAINEPSLIQKSSTTVSSSS-ERSKKIDSSVDNCIT 872
Query: 771 NGLPSLESNLPSAGRDDTIVAVSMLGADYYDSHMGIIME 809
N +PS ESNLPS GR A S+ + D M I M+
Sbjct: 873 NAMPS-ESNLPSVGRTADKGACSLNTRETSDVTMRIAMD 910
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147779793|emb|CAN64435.1| hypothetical protein VITISV_008540 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 971 bits (2509), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 495/708 (69%), Positives = 569/708 (80%), Gaps = 29/708 (4%)
Query: 1 MQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGV-RDGMMDSQSGNCVNS 59
MQP P++ DG EGFR HP LLVVAG+++N L PGQN SH GG+ RDG DSQSGNC++S
Sbjct: 502 MQPIPLESDGHEGFRTSHPLLLVVAGDESNCLNPGQNHSHFGGLGRDGSSDSQSGNCISS 561
Query: 60 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYP 119
PTAVRFYS +S+CY HVLRFRS+VCMVRCSPRIVAVGLATQIYCFDALTL NKFSVLTYP
Sbjct: 562 PTAVRFYSLRSNCYVHVLRFRSAVCMVRCSPRIVAVGLATQIYCFDALTLGNKFSVLTYP 621
Query: 120 VPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPS-GVSPSTSPGG 178
VPQL GQG +G+NVGYGPM+VGPRWLAYASN LLSN GRL+PQNLTPS GVSPSTSPG
Sbjct: 622 VPQLGGQGTLGVNVGYGPMSVGPRWLAYASNNPLLSNRGRLNPQNLTPSPGVSPSTSPGS 681
Query: 179 SSLVARYAMEHSKQFAAGL-------SKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGA 231
SSLVARYAME SKQ AAG+ KTLSKY Q+LLPDGS+SP WKVG A A
Sbjct: 682 SSLVARYAMESSKQLAAGIINLGDMGYKTLSKYYQDLLPDGSNSPG-----WKVGGLAAA 736
Query: 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSC 291
+ DNAG+VV+KDFV+RA+ISQF+AHTSPISALCFDPSGTLLVTASV+GNNINIFRIMPSC
Sbjct: 737 ETDNAGMVVIKDFVSRAVISQFRAHTSPISALCFDPSGTLLVTASVHGNNINIFRIMPSC 796
Query: 292 MRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351
SGSG YDW+SSHVHLYKLHRG+T+A IQDI FSHYSQWI+IVSSKGTCHVFV+SPF
Sbjct: 797 TCSGSGCQSYDWSSSHVHLYKLHRGMTTAIIQDISFSHYSQWISIVSSKGTCHVFVISPF 856
Query: 352 GGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQCV-LPPPPVTLSVVSRIKYSSFG 410
GGD+GFQT +S G +P LFPVLSLPWW +SS I QQ PPPP TLSVVSRIK + G
Sbjct: 857 GGDAGFQTSNSHGEEPSLFPVLSLPWWFSSSCIINQQSFPAPPPPHTLSVVSRIKNCNAG 916
Query: 411 WLNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQH 470
WLNTVS A+AS+ GKV VPSGAVAAVFHNS++ S QHV++R NSLEHLLVYTPSG+V+QH
Sbjct: 917 WLNTVSIAAASATGKVLVPSGAVAAVFHNSLSQSPQHVHTRVNSLEHLLVYTPSGHVIQH 976
Query: 471 ELLPSIGMGPSDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATC 530
EL PS+G SD G+R + S +Q+++L+VRVEP+QWWDVCRRS+WPEREE +SE
Sbjct: 977 ELFPSMGAELSDGGTRTLSGSFRQIQDEELRVRVEPIQWWDVCRRSEWPEREECVSER-- 1034
Query: 531 DGHGAVEIFQNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSS 590
+I +KSD ED+Y D L+I K+ SVK ERSHWYLSNAEVQ+SS
Sbjct: 1035 --QKYAKIIVDKSDSEDSYRTDLLEI----------KSDSVKPLERSHWYLSNAEVQISS 1082
Query: 591 GRLPIWQSSKISFFKMDSPRANTHASGEFEIEKVSVHEVEIKRKELLPVFDHFQCIKPSW 650
GR+PIW SKI F+ MD PR H GEFEIEK+ VHEVEI+RK+LLPVFDHF IK W
Sbjct: 1083 GRIPIWHKSKICFYMMDPPRVKNHVGGEFEIEKLPVHEVEIRRKDLLPVFDHFHSIKSGW 1142
Query: 651 NNRGLAEEKRPLSPSSGPYQAEDKIAQQTVICHSNPASLSSTESSEGG 698
N+R LA P +PS +QA+D++ ++TVICHS PASLSSTESS+GG
Sbjct: 1143 NDRSLAGVSYPNAPSLESHQAKDRVTEETVICHSKPASLSSTESSDGG 1190
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356504886|ref|XP_003521225.1| PREDICTED: uncharacterized protein LOC100785780 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 952 bits (2461), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 541/890 (60%), Positives = 644/890 (72%), Gaps = 31/890 (3%)
Query: 1 MQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGV-RDGMMDSQSGNCVNS 59
MQPFPV DG EGFRK HP LLVV+G+DT+ QN + L G+ RDG ++Q GN VNS
Sbjct: 113 MQPFPVGCDGQEGFRKSHPLLLVVSGDDTSN--ANQNSTSLSGLGRDGNFETQPGNNVNS 170
Query: 60 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYP 119
T VRFYS +SHCY HVLRFRS+VCM+RCS RIVAVGLATQIYCFDA+TLENKFSVLTYP
Sbjct: 171 STVVRFYSLKSHCYVHVLRFRSTVCMIRCSSRIVAVGLATQIYCFDAVTLENKFSVLTYP 230
Query: 120 VPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLT-PSGVSPSTSPGG 178
V Q AGQG G+NVGYGPMAVGPRWLAYASN L SN G LSPQN + G+SPSTSP
Sbjct: 231 VSQFAGQGTTGVNVGYGPMAVGPRWLAYASNNPLPSNLGCLSPQNFSDSPGISPSTSPSS 290
Query: 179 SSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGI 238
SLVARYA+E S+ AAG+ K YCQELLPDGSSSP+ NS KV R G D DNAG+
Sbjct: 291 GSLVARYAVESSRHLAAGIIK----YCQELLPDGSSSPIQSNSGVKVNRVTGIDADNAGM 346
Query: 239 VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGN 298
VV+KDFV+R+IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPS SG
Sbjct: 347 VVIKDFVSRSIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSFTCKSSGI 406
Query: 299 HKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQ 358
+WNSSHVHLYKLHRGIT A IQDICFS++SQWIAIVSSKGTCH+FVLSPFGGD+GF+
Sbjct: 407 PSSNWNSSHVHLYKLHRGITPAMIQDICFSNFSQWIAIVSSKGTCHLFVLSPFGGDTGFR 466
Query: 359 TLSSQGGDPYLFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTVSNA 418
+SSQG +P+L PV SLPWW T + IS QQ + PP PV LSV SRIKYSSFGWLNTV N+
Sbjct: 467 IISSQGEEPFLLPVFSLPWWYTPASISYQQSLPPPAPVVLSVASRIKYSSFGWLNTVHNS 526
Query: 419 SASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHELLPSIGM 478
SA+ GKVFVPSGA+AA+FHNS++HS Q VNS+ LEH+LVYTPSG+VVQHELL S+G+
Sbjct: 527 SANVTGKVFVPSGAIAAIFHNSLSHSQQLVNSKAKPLEHILVYTPSGHVVQHELLASVGL 586
Query: 479 GPSDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATCDGHGAVEI 538
G +D+G R ++ SL+ +QED+ +V+VEP+QWWDVCRRS+WPER + T D G +E
Sbjct: 587 GTTDNGLRNQSTSLLHMQEDEFRVKVEPIQWWDVCRRSEWPERGDTCCN-TFDRQGGIER 645
Query: 539 FQNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGRLPIWQS 598
Q K D +G++FL D EK ++ + ++R HWYLSNAEVQ + GRLPIWQ
Sbjct: 646 VQEKISYSDVHGLNFLGTRDRAGEK-MVRSSNENMHDRFHWYLSNAEVQRNFGRLPIWQK 704
Query: 599 SKISFFKMDSPRANTHASGEFEIEKVSVHEVEIKRKELLPVFDHFQCIKPSWNNRGLAEE 658
SKI + M A+ A+GEFEIEKV V+EVEIKRKELLPVFDHF I+ S N RGL+ E
Sbjct: 705 SKICCYSMSCAGASFSATGEFEIEKVPVNEVEIKRKELLPVFDHFHSIRSSGNERGLSGE 764
Query: 659 KRPLSPSSGPY-QAEDK-IAQQTVICHSNPASLSSTESSEGGSSRRIENLLDLDQVNNDK 716
R LSP S + QA+DK TVICHS PASLSSTESSEGGSSRRIENLLDLDQV
Sbjct: 765 -RYLSPISPVHNQADDKETVDVTVICHSKPASLSSTESSEGGSSRRIENLLDLDQV---- 819
Query: 717 LYVPTGQTLNEIYNGRHEVTMVESSTLNKRCL--DIVSTSPEHSENDNPHVNNHIPNGLP 774
+ Q L EI R VE + N+ + +S + + + + H+ N I G
Sbjct: 820 --ASSYQILGEICLERTGTINVEPALQNQIVMSPSCLSGNLKQVDFNADHIANPILQG-- 875
Query: 775 SLESNLPSAGRDDTIVAVSMLGA--DYYDSHMGIIMEDRALPLLSCPVNLGVSLREEHCK 832
N+ S GRD V +S A +DSH +E + L ++G+S ++ HCK
Sbjct: 876 ---RNITSEGRDSIGVGISENSALVPEHDSHETEFVE---VALTKQNEDVGISFKDGHCK 929
Query: 833 IVEQNGLCKSTDVVNDDINGGNSHCESKKLEEDAEDDEMLGGMFAFFEEG 882
E + T+VV DD++ +SH E ++LEED E+DEMLGG+FAF EEG
Sbjct: 930 TQEPDESDVLTEVVTDDVDSSSSHHEREQLEEDEENDEMLGGIFAFSEEG 979
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356570542|ref|XP_003553444.1| PREDICTED: uncharacterized protein LOC100818381 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 895 bits (2312), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 509/884 (57%), Positives = 607/884 (68%), Gaps = 55/884 (6%)
Query: 1 MQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGV-RDGMMDSQSGNCVNS 59
MQP V DG EGFRK HP LL V G+DT+ + + L GV RDG +++Q+ N VNS
Sbjct: 113 MQPLAVGCDGQEGFRKSHPLLLAVCGDDTSKV--NHKSTSLSGVGRDGNVETQTRNNVNS 170
Query: 60 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYP 119
T V+FYS +SH Y HVLRFRS+VCM+RCS RIVAVGLATQI+CFDA TLENK SVLTYP
Sbjct: 171 STVVQFYSLKSHSYVHVLRFRSTVCMIRCSSRIVAVGLATQIHCFDASTLENKLSVLTYP 230
Query: 120 VPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGS 179
V QLAGQG G+NVGYGPMA+G RWLAYASN+ L SN G LSPQN + S ++ S
Sbjct: 231 VTQLAGQGTTGVNVGYGPMALGRRWLAYASNSPLPSNLGCLSPQNFSASPGISPSTSPSS 290
Query: 180 S-LVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGI 238
LVARYAME S+ AAG+ K YCQELLPDGSSSPVS NS KV R G D DNAG+
Sbjct: 291 GSLVARYAMESSRHLAAGIIK----YCQELLPDGSSSPVSSNSGVKVDRVTGIDADNAGM 346
Query: 239 VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGN 298
VVV+DFV+R+IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPS S
Sbjct: 347 VVVQDFVSRSIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSFTCKSSAT 406
Query: 299 HKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQ 358
+WNSSHVHLYKLHRGIT A IQDICFS++SQWIAIVSSKGTCH+FVLSPFGGD+GFQ
Sbjct: 407 PSSNWNSSHVHLYKLHRGITPAMIQDICFSNFSQWIAIVSSKGTCHLFVLSPFGGDTGFQ 466
Query: 359 TLSSQGGDPYLFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTVSNA 418
+SSQG +P L PV+SLPWW T + I Q + PP P LSV SRIKYSSFGWLNTV N+
Sbjct: 467 IISSQGEEPSLLPVVSLPWWYTPASIPYQPSLPPPAPAVLSVASRIKYSSFGWLNTVHNS 526
Query: 419 SASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHELLPSIGM 478
S + KVFVPSGA+AA+FHNS++HS Q VNS+ LEH+LVYTPSG+VVQHELLPS+G+
Sbjct: 527 STNVTEKVFVPSGAIAAIFHNSLSHSQQPVNSKAKPLEHILVYTPSGHVVQHELLPSVGL 586
Query: 479 GPSDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATCDGHGAVEI 538
G +D G R ++ S++ +QED+ +V+VEP+QWWDVCRRS+WPER + +T D G +E
Sbjct: 587 GTTDSGLRNQSTSVLHMQEDEFRVKVEPIQWWDVCRRSEWPERGDSCC-STFDRQGGIEG 645
Query: 539 FQNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGRLPIWQS 598
Q K D +G+DF+ D EK K+ S +R HWYLSNAEVQ + GRLPIWQ
Sbjct: 646 VQEKISYSDFHGLDFVGSRDEAGEK-MVKSSSENMQDRFHWYLSNAEVQGNFGRLPIWQK 704
Query: 599 SKISFFKMDSPRANTHASGEFEIEKVSVHEVEIKRKELLPVFDHFQCIKPSWNNRGLAEE 658
SKI F+ M A+ +GEFEIEKV +EVEI+RKELLPVFDHF I+ SWN RGLA +
Sbjct: 705 SKICFYSMSCAGASFSGTGEFEIEKVPANEVEIRRKELLPVFDHFHSIRSSWNERGLAGD 764
Query: 659 KRPLSPSSGPYQAEDK-IAQQTVICHSNPASLSSTESSEGGSSRRIENLLDLDQVNNDKL 717
+ S S QA+DK A TVICHS PASLSSTESSEGGSSRRIENLLDLDQV +
Sbjct: 765 RYLSSTSPVLDQADDKETADVTVICHSKPASLSSTESSEGGSSRRIENLLDLDQVAS--- 821
Query: 718 YVPTGQTLNEIYNGRHEVTMVESSTLNKRCLDIVSTSPEHSENDNPHVNNHIPNGLPSLE 777
+ Q L EI R VE N+ + + E SEN
Sbjct: 822 ---SYQILGEICLERMGTINVEPCLQNQIVMS--PSCVEISENS---------------A 861
Query: 778 SNLPSAGRDDTIVAVSMLGADYYDSHMGIIMEDRALPLLSCPVNLGVSLREEHCKIVEQN 837
L A + V V++ + +G+S ++ HCK E +
Sbjct: 862 LVLEHASHETEFVEVALAKQNE---------------------GVGISFKDTHCKTQEHD 900
Query: 838 GLCKSTDVVNDDINGGNSHCESKKLEEDAEDDEMLGGMFAFFEE 881
G T+VV DD++ S+ E ++LEE E+DEMLGG+F+F EE
Sbjct: 901 GSDVLTEVVTDDVDSSCSYHEREQLEEHGENDEMLGGIFSFSEE 944
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359487960|ref|XP_003633682.1| PREDICTED: uncharacterized protein LOC100250287 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 837 bits (2162), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 502/914 (54%), Positives = 610/914 (66%), Gaps = 67/914 (7%)
Query: 1 MQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSP 60
MQP P K +G EGFR HP LLVVAG++T L P Q+ G VRDG ++ Q+GN VNSP
Sbjct: 108 MQPIPAKSEGREGFRASHPLLLVVAGDETKGLGPIQSVRD-GPVRDGYIEPQAGNVVNSP 166
Query: 61 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPV 120
TAVRFYS +SH Y HVLRFRS+V MVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPV
Sbjct: 167 TAVRFYSLRSHNYVHVLRFRSTVYMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPV 226
Query: 121 PQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLT-PSGVSPSTSPGGS 179
PQL GQG G+N+GYGPM VG RWLAYASN LLSN GRLSPQ+LT GVSPSTSP
Sbjct: 227 PQLGGQGLAGVNIGYGPMDVGLRWLAYASNNPLLSNMGRLSPQSLTPSPGVSPSTSPSSG 286
Query: 180 SLVARYAMEHSKQFAAGL-------SKTLSKYCQELLPDGSSSPVSPNSVWKVGRHA--G 230
SLVARYAME SKQ AAG+ KTLSKYCQEL PDGSSSPVS +S WKVGR A
Sbjct: 287 SLVARYAMESSKQLAAGIINLGDMGYKTLSKYCQELRPDGSSSPVSSHSSWKVGRVASHS 346
Query: 231 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPS 290
+ D+AG+VVVKDFV+RA++SQF+AHTSPISALCFDPSGTLLVTAS++GNNINIFRIMPS
Sbjct: 347 NETDSAGMVVVKDFVSRAVVSQFRAHTSPISALCFDPSGTLLVTASIHGNNINIFRIMPS 406
Query: 291 CMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 350
C ++ SG YDWN+SHVHLYKLHRG+TSA IQDICFSHYSQWIAIVSSKGTCH+FVLSP
Sbjct: 407 CSQNASG---YDWNASHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSKGTCHIFVLSP 463
Query: 351 FGGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQCVLPPPP--VTLSVVSRIKYSS 408
FGG+SG Q +S L PVLSLPWW TSS + QQ PPPP +TLSVVSRIK S
Sbjct: 464 FGGESGLQIQNSHVRSS-LLPVLSLPWWSTSSFMINQQSFSPPPPQTITLSVVSRIKNS- 521
Query: 409 FGWLNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVV 468
GWLN+VSN ++S+ GKV VPSGAVAAVFH+S+ H + + N+LEHLLVYTPSG+V+
Sbjct: 522 -GWLNSVSNVASSAAGKVSVPSGAVAAVFHSSVPHDLLPAHLKVNALEHLLVYTPSGHVI 580
Query: 469 QHELLP-SIGMGPSDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREEFISE 527
Q+EL G S+ S + SL+ +Q+++L+V+VEPVQWWDVCR WPEREE I+
Sbjct: 581 QYELFAIHGGRRASETASGTGSGSLVQVQDEELRVKVEPVQWWDVCRGMAWPEREECIAG 640
Query: 528 ATCDGHGAVE-IFQNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEV 586
HG E + + SDCEDN T + VK +ER HWYLSNAEV
Sbjct: 641 IM---HGRQETVVMDTSDCEDN---------------DTGEMDLVKPHERLHWYLSNAEV 682
Query: 587 QMSSGRLPIWQSSKISFFKMD---SPRAN--THASGEFEIEKVSVHEVEIKRKELLPVFD 641
Q+ SGR+PIWQ SKI FF MD S N GE EIEK V EVEIKRK+LLPVFD
Sbjct: 683 QIRSGRIPIWQKSKIYFFTMDPLVSDECNFTKDTGGEIEIEKFPVQEVEIKRKDLLPVFD 742
Query: 642 HFQCIKPSWNNRGLAEEKRPLSPSSGPYQAEDKIAQQTVICHSNPASLSSTESSEGGSSR 701
HF I+ W+ R L+ P S S P+ A++K ++ S S +++GG
Sbjct: 743 HFHRIQSDWSERDLSRGISPSSSSE-PHGAKEKFSEGVANPQSKLVVPGSVGNTDGGPPS 801
Query: 702 RIENLLDLDQVNNDKLYVPTGQTLNEIYNGRHEVTMVESSTLNKRC---LDIVSTSPEHS 758
+ E DL+Q+N K QT+ E NG + + + +L D VS SP+
Sbjct: 802 KDETPCDLNQMNTVKTSSHIIQTVKE--NGVKSGSGILAPSLPNHGPFNRDSVSGSPKQM 859
Query: 759 ENDNPHVNNHIPNGLPSLESNLPSAGR--------DDTI--VAVSMLGADYYDSHMGIIM 808
+P +++ N + S+++ S+ R D++ S ++ DS M I+
Sbjct: 860 MGISPIEDSYFVNSISSIKNGSLSSARTIGKEVESSDSVGTSEASNTSSNRSDSSMNILD 919
Query: 809 EDRALPLLSCPVNLGVSLREEHCKIVEQNGLCKSTDVVNDDINGGNSHCESKKLEEDAED 868
E PL G +E +CK + + T+V D++ G+S C+ +K EED +
Sbjct: 920 EGPVEPLY-----FGQYFQEGYCKASTLDECRELTEVT--DVDSGSSPCDREKSEEDENN 972
Query: 869 DEMLGGMFAFFEEG 882
D+MLGG+FAF EE
Sbjct: 973 DDMLGGVFAFSEEA 986
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449462290|ref|XP_004148874.1| PREDICTED: uncharacterized protein LOC101218955 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 836 bits (2160), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/897 (53%), Positives = 598/897 (66%), Gaps = 73/897 (8%)
Query: 5 PVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVR 64
P K D E R+ HP LL+VAGE++ +A GQN S +G + G+C NS AV+
Sbjct: 125 PAKSDRHELLRRSHPLLLIVAGEESKDVAMGQNHSPMGVL--------PGSCANSHNAVQ 176
Query: 65 FYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLA 124
FYS +SH Y HVLRFRS+VCMVRCS +IVAVGLATQIYCFDA+TLE FSVLT PVP+++
Sbjct: 177 FYSLKSHSYVHVLRFRSAVCMVRCSSQIVAVGLATQIYCFDAITLEVVFSVLTSPVPEIS 236
Query: 125 GQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSG-VSPSTSPGGSSLVA 183
GQG G NVGYGPMAVGPRWLAY S + S + LS Q+ PS V+P + PG A
Sbjct: 237 GQGTTGTNVGYGPMAVGPRWLAYPSVGPVPSTTVPLSSQSPFPSQSVNPPSLPGSDRTKA 296
Query: 184 RYAMEHSKQFAAGL-------SKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNA 236
Y ++ KQ AAG+ KT S Y Q+L + + + NS WK GR AG + D
Sbjct: 297 HYPVKSGKQLAAGIFNLGGMGYKTWSNYYQDLNLNKYNFLIESNSGWKAGRLAGMEADYP 356
Query: 237 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGS 296
G+V VKDFVTRAII+QF+AHTSP+SALCFDPSGTLLVTAS+YGNNINIFRI+P+ RSGS
Sbjct: 357 GMVAVKDFVTRAIITQFRAHTSPLSALCFDPSGTLLVTASIYGNNINIFRIIPNS-RSGS 415
Query: 297 GNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSG 356
+D NSSHVHLYKLHRGITSA IQDICFS+YSQW+AIVSSKGTCHVF+LSPFGG++G
Sbjct: 416 SGLSFDCNSSHVHLYKLHRGITSAMIQDICFSNYSQWVAIVSSKGTCHVFLLSPFGGEAG 475
Query: 357 FQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTVS 416
+ L+SQG +P + PVL+LPWW TSS I QQ PPPPVTLSVVSRIKYSSFGWLNTV+
Sbjct: 476 LRILNSQGEEPCVLPVLTLPWWSTSSLIINQQSFPPPPPVTLSVVSRIKYSSFGWLNTVN 535
Query: 417 NASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHELLPSI 476
N++ + GK FVPSGAVAA+FHN+++H+ QHVNS+ NSLEHLLVYTPSG+VVQHELLPS
Sbjct: 536 NSAGA--GKGFVPSGAVAAIFHNTLSHNIQHVNSKPNSLEHLLVYTPSGHVVQHELLPSF 593
Query: 477 GMGPSDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATCDGHGAV 536
G PS SR ++S++ +QEDDL+++VEP+QWWD CRRSD+ ER E I ++T DG
Sbjct: 594 GAEPSLHSSRTESSSVLHMQEDDLKLKVEPIQWWDACRRSDYSERGECIHDSTSDGQDIA 653
Query: 537 E---IFQNKSDCEDNYGIDFLDIND--CIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSG 591
+ I ++D E + +DF ++ND E + S ++E+SHW+LSNAEVQ+SSG
Sbjct: 654 KTNAIQNERTDTEKTHELDFQEMNDGSSADEILRVRGQSGITHEQSHWFLSNAEVQLSSG 713
Query: 592 RLPIWQSSKISFFKMDSPRANTHASGEFEIEKVSVHEVEIKRKELLPVFDHFQCIKPSWN 651
RLPIWQ+SKI + M SPR N+ A GEFEIEKV V E+E++ KELLP FDH +K N
Sbjct: 714 RLPIWQNSKI--YVMSSPRINSIAGGEFEIEKVPVQEIEVREKELLPCFDHCLSLKSGCN 771
Query: 652 NRGLAEEKRPLSPSSGP-YQAEDKIAQQ-TVICHSNPASLSSTESSEGGSSRRIENLLDL 709
+RGL R +SP+S YQ+E K+ ++ VICHS PASLSSTESS+GGSSRR+E+ +D
Sbjct: 772 DRGLL-LGRCISPTSSEIYQSEVKVTEEIVVICHSKPASLSSTESSDGGSSRRMESSIDF 830
Query: 710 DQVNNDKLYVPTGQTLNEIYNGRHEVTMVESSTLNKRCLDIVSTSPEHSENDNPHVNNHI 769
DQ + +K P Q LNE+Y E ES T K +I+ T E S D H
Sbjct: 831 DQASCEKSCTPLCQHLNEMY---WEKRASESFTTPKSS-NILCTQVEGSRIDGSPCGLHF 886
Query: 770 PN---GLPSLESNLPSAGRDDTIVAVSMLGADYYDSHMGIIMEDRALPLLSCPVNLGVSL 826
N G PS+E + + P V
Sbjct: 887 SNSNFGFPSIEQ-----------------------------VSSKTPPFNE--VTFQHIC 915
Query: 827 REEHCKIVEQNGLCKS-TDVVNDDINGGNSHCESKKLEEDAEDDEMLGGMFAFFEEG 882
+EE CK++E N C+ D+ D ++G E + + D E+D++ G MF EEG
Sbjct: 916 QEEPCKVLESNDGCQDINDISTDHVDG----FEYENICSD-ENDKIFGDMFTSSEEG 967
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297843152|ref|XP_002889457.1| hypothetical protein ARALYDRAFT_333664 [Arabidopsis lyrata subsp. lyrata] gi|297335299|gb|EFH65716.1| hypothetical protein ARALYDRAFT_333664 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 825 bits (2130), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/891 (51%), Positives = 576/891 (64%), Gaps = 61/891 (6%)
Query: 1 MQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGV-RDGMMDSQSGNCVNS 59
MQP P + EGF HP LLVVAG+DT+ G + S G + RDG DS++G+ +N
Sbjct: 113 MQPLPARSGDHEGFGNSHPLLLVVAGDDTSGTGLGHSFSQNGSLARDGKSDSKAGDAINY 172
Query: 60 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYP 119
PT VRFYS +SH Y +VLRFRSSVCM+RCS R+VAVGLA QIYC DALTLENKFSVLTYP
Sbjct: 173 PTTVRFYSLRSHSYVYVLRFRSSVCMIRCSSRVVAVGLANQIYCCDALTLENKFSVLTYP 232
Query: 120 VPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGS 179
VPQ QG + +NVGYGPMAVGPRWLAYAS + + +GRLSPQ T S +S G
Sbjct: 233 VPQPVRQGTIRVNVGYGPMAVGPRWLAYASKSSMTMKTGRLSPQTFTSSPSLSPSSSSGG 292
Query: 180 S-LVARYAMEHSKQFAAGL-------SKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGA 231
S ++ARYAME SKQ A GL KTLSKYCQ++LPDGS+SP SPNS+WKVG G+
Sbjct: 293 SSIMARYAMESSKQLANGLINLGDMGYKTLSKYCQDMLPDGSTSPASPNSIWKVGGVTGS 352
Query: 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSC 291
D +NAG+V VKD V+ A++SQFKAHTSPISALCFDPSGTLLVTASV GNNIN+F+IMPS
Sbjct: 353 DAENAGMVAVKDLVSGALVSQFKAHTSPISALCFDPSGTLLVTASVCGNNINVFQIMPSR 412
Query: 292 MRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351
+ G+ Y+W SSH+HL+KLHRGITSA +QDICFS SQW+AI+SSKGTCH+FVL+
Sbjct: 413 SHNAPGDLSYEWESSHMHLFKLHRGITSAIVQDICFSQQSQWVAIISSKGTCHIFVLNSS 472
Query: 352 GGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGW 411
G D+ Q +G +P P SL WW T S + QQ +LPPP V LSVVSRIKYSSFGW
Sbjct: 473 GSDAAIQPC--EGEEPTRLPASSLSWWFTQSLSNNQQSLLPPPAVALSVVSRIKYSSFGW 530
Query: 412 LNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHE 471
LNTVSNA+ ++ GKVFVPSGAVAAVFH S+ H Q +NSRTN+LEH+LVYTPSG+VVQHE
Sbjct: 531 LNTVSNAATAATGKVFVPSGAVAAVFHKSVTHDHQ-LNSRTNALEHVLVYTPSGHVVQHE 589
Query: 472 LLPSIGMGPSDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATCD 531
LLPS+ ++GS ++ S + +QEDDL+V+VEP+QWWDVCRRSDW E EE + + +
Sbjct: 590 LLPSVCTESPENGSTVQRTSHVQVQEDDLRVKVEPIQWWDVCRRSDWLETEERLPRSITE 649
Query: 532 GHGAVEIFQNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSG 591
+E N + + LDIN E +CS K ERSH YLSN EV+++SG
Sbjct: 650 KQYDLETVSNNLTSHEVACLS-LDINSHFGEDKYLISCSEKPPERSHCYLSNFEVKVTSG 708
Query: 592 RLPIWQSSKISFFKMDSPRANTHASGEFEIEKVSVHEVEIKRKELLPVFDHFQCIKPSWN 651
LP+WQ+SKISF MDSPR ++ GEFEIEKV HE+EIK+K+LLPVFDHF K +
Sbjct: 709 MLPVWQNSKISFHVMDSPRDSSSTGGEFEIEKVPAHELEIKQKKLLPVFDHFHSTKATLE 768
Query: 652 NRGLAEEKRPLSPSSGPYQAEDKIAQQTVICHSNPASLSSTESSEGGSSRRIENLLDLDQ 711
+R K + +SG +Q KI Q + CHS P S+ S ESSE G ++++ENL D D
Sbjct: 769 DR--FSMKCYHTSASGSHQVNGKICQDIINCHSKPGSVESAESSEEGLTKQMENLRDSDH 826
Query: 712 VNND-KLYVPTGQTLNEIYNGRHEVTMVESSTLNKRCLDIVSTSPEHSENDNPHVNNHIP 770
+NN K + T+N IY E+ +N N + N +
Sbjct: 827 LNNSFKSSLALYPTVNGIYK---EI---------------------EKKNTNGWIENPVT 862
Query: 771 NGLPSLESNLPSAGRDDTIVAVSMLGADYYDSHMGIIMEDRALPLLSCPVNLGVSLREEH 830
L +L+ + G + H + ++ L P+ G +L EEH
Sbjct: 863 ANLSTLKETRITNGFTTPPI------------HTDSTVNEQMLSTGKPPMGFGFALHEEH 910
Query: 831 CKIV---EQNGLCKSTDVVNDDINGGNSHCESKKLEEDAEDDEMLGGMFAF 878
CK V ++ L K D V N H + E + DEM+ GM +F
Sbjct: 911 CKAVADPKEEHLKKKLDEVT------NGHHLNVNNIEKLQGDEMVYGMVSF 955
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|240253994|ref|NP_171837.7| autophagy 18G-like protein [Arabidopsis thaliana] gi|27311609|gb|AAO00770.1| Unknown protein [Arabidopsis thaliana] gi|332189445|gb|AEE27566.1| autophagy 18G-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 814 bits (2102), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/901 (51%), Positives = 584/901 (64%), Gaps = 80/901 (8%)
Query: 1 MQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGV-RDGMMDSQSGNCVNS 59
MQP P + EGF HP LLVVAG++TN G + S G + RDG DS++G+ +N
Sbjct: 113 MQPLPARSGDHEGFWNSHPLLLVVAGDETNGTGLGHSFSQNGSLARDGSSDSKAGDAINY 172
Query: 60 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYP 119
PT VRFYS +SH Y +VLRFRSSVCM+RCS R+VAVGLA QIYC DALTLENKFSVLTYP
Sbjct: 173 PTTVRFYSLRSHSYVYVLRFRSSVCMIRCSSRVVAVGLANQIYCVDALTLENKFSVLTYP 232
Query: 120 VPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGS 179
VPQ QG +NVGYGPMAVGPRWLAYAS + + +GRLSPQ T S +S G
Sbjct: 233 VPQPVRQGTTRVNVGYGPMAVGPRWLAYASKSSMTMKTGRLSPQTFTSSPSLSPSSSSGG 292
Query: 180 S-LVARYAMEHSKQFAAGL-------SKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGA 231
S +ARYAME SKQ A GL KTLSKYCQ++LPDGS+SP SPN++WKVG +G+
Sbjct: 293 SSFMARYAMESSKQLANGLINLGDMGYKTLSKYCQDMLPDGSTSPASPNAIWKVGGVSGS 352
Query: 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSC 291
D +NAG+V VKD V+ A++SQFKAHTSPISALCFDPSGTLLVTASV GNNIN+F+IMPS
Sbjct: 353 DAENAGMVAVKDLVSGALVSQFKAHTSPISALCFDPSGTLLVTASVCGNNINVFQIMPSR 412
Query: 292 MRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351
+ G+ Y+W SSHVHL+KLHRGITSA +QDICFS SQW+AI+SSKGTCH+FVL+
Sbjct: 413 SHNAPGDLSYEWESSHVHLFKLHRGITSAIVQDICFSQQSQWVAIISSKGTCHIFVLNSS 472
Query: 352 GGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGW 411
G D+ FQ +G +P P SLPWW T S S QQ + PP V LSVVSRIKYSSFGW
Sbjct: 473 GSDAAFQ--PCEGEEPTRLPASSLPWWFTQSLSSNQQSLSPPTAVALSVVSRIKYSSFGW 530
Query: 412 LNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHE 471
LNTVSNA+ ++ GKVFVPSGAVAAVFH S+ H Q +NSRTN+LEH+LVYTPSG+VVQHE
Sbjct: 531 LNTVSNATTAATGKVFVPSGAVAAVFHKSVTHDLQ-LNSRTNALEHILVYTPSGHVVQHE 589
Query: 472 LLPSIGMGPSDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATCD 531
LLPS+ ++G R++ S + +QEDDL+V+VEP+QWWDVCRRSDW E EE + ++ +
Sbjct: 590 LLPSVCTESPENGLRVQKTSHVQVQEDDLRVKVEPIQWWDVCRRSDWLETEERLPKSITE 649
Query: 532 GHGAVEIFQNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSG 591
+E N ++ + LD+N E K+CS K ERSH YLSN EV+++SG
Sbjct: 650 KQYDLETVSNHLTSHEDACLS-LDMNSHFSEDKYLKSCSEKPPERSHCYLSNFEVKVTSG 708
Query: 592 RLPIWQSSKISFFKMDSPRANTHASGEFEIEKVSVHEVEIKRKELLPVFDHFQCIKPSWN 651
LP+WQ+SKISF MDSPR ++ GEFEIEKV HE+EIK+K+LLPVFDHF K +
Sbjct: 709 MLPVWQNSKISFHVMDSPRDSSSTGGEFEIEKVPAHELEIKQKKLLPVFDHFHSTKATLE 768
Query: 652 NRGLAEEKRPLSPSSGPYQAEDKIAQQTVICHSNPASLSSTESSEGGSSRRIENLLDLDQ 711
+R K + ++G +Q KI Q + CHS P S+ S ESSE GS++++ENL D D
Sbjct: 769 DR--FSMKCYHTSATGSHQVNGKICQDIINCHSKPGSIESAESSEEGSTKQMENLHDSDH 826
Query: 712 VNND-KLYVPTGQTLNEIY--------NGRHE--VTMVESSTLNKRCLDIVSTSPEHSEN 760
++N K +P T+N IY NG E VT S+ R + +T P +++
Sbjct: 827 MSNSIKSSLPLYPTVNGIYKEIEKNNANGWMEKPVTAKLSTLKETRITNGFTTPPILTDS 886
Query: 761 DNPHVNNHIPNGLPSLESNLPSAGRDDTIVAVSMLGADYYDSHMGIIMEDRALPLLSCPV 820
N + + G P P+
Sbjct: 887 VNEQM---LSTGKP--------------------------------------------PM 899
Query: 821 NLGVSLREEHCKIV---EQNGLCKSTDVVNDDINGGNSHCESKKLEEDAEDDEMLGGMFA 877
G +L EEHCK V ++ L K D V + + ++ ++KL + D+M+ GM +
Sbjct: 900 GFGFALHEEHCKAVADPKEEHLKKKLDEVTNVHHLNVNNNNTEKL----QGDKMVHGMVS 955
Query: 878 F 878
F
Sbjct: 956 F 956
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 882 | ||||||
| TAIR|locus:2020853 | 959 | ATG18G "AT1G03380" [Arabidopsi | 0.819 | 0.753 | 0.553 | 2.7e-220 | |
| TAIR|locus:2199512 | 927 | ATG18H "AT1G54710" [Arabidopsi | 0.600 | 0.571 | 0.556 | 2e-188 | |
| TAIR|locus:2157523 | 763 | G18F "AT5G54730" [Arabidopsis | 0.315 | 0.364 | 0.420 | 9.7e-69 | |
| FB|FBgn0262684 | 1122 | CG43154 [Drosophila melanogast | 0.378 | 0.297 | 0.288 | 5.2e-23 | |
| ZFIN|ZDB-GENE-040426-1257 | 910 | bcas3 "breast carcinoma amplif | 0.233 | 0.226 | 0.322 | 4.2e-20 | |
| UNIPROTKB|F1P1V9 | 803 | BCAS3 "Uncharacterized protein | 0.236 | 0.260 | 0.298 | 2.5e-18 | |
| UNIPROTKB|F1N6R8 | 724 | BCAS3 "Uncharacterized protein | 0.239 | 0.291 | 0.283 | 1.7e-18 | |
| UNIPROTKB|F1S209 | 820 | BCAS3 "Uncharacterized protein | 0.239 | 0.257 | 0.283 | 2.1e-18 | |
| MGI|MGI:2385848 | 928 | Bcas3 "breast carcinoma amplif | 0.236 | 0.225 | 0.285 | 4.2e-18 | |
| UNIPROTKB|Q9H6U6 | 928 | BCAS3 "Breast carcinoma-amplif | 0.236 | 0.225 | 0.280 | 6.8e-18 |
| TAIR|locus:2020853 ATG18G "AT1G03380" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2052 (727.4 bits), Expect = 2.7e-220, Sum P(3) = 2.7e-220
Identities = 409/739 (55%), Positives = 504/739 (68%)
Query: 1 MQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGV-RDGMMDSQSGNCVNS 59
MQP P + EGF HP LLVVAG++TN G + S G + RDG DS++G+ +N
Sbjct: 113 MQPLPARSGDHEGFWNSHPLLLVVAGDETNGTGLGHSFSQNGSLARDGSSDSKAGDAINY 172
Query: 60 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYP 119
PT VRFYS +SH Y +VLRFRSSVCM+RCS R+VAVGLA QIYC DALTLENKFSVLTYP
Sbjct: 173 PTTVRFYSLRSHSYVYVLRFRSSVCMIRCSSRVVAVGLANQIYCVDALTLENKFSVLTYP 232
Query: 120 VPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNXXXXXXXX-XXXXXX 178
VPQ QG +NVGYGPMAVGPRWLAYAS + + +GRLSPQ
Sbjct: 233 VPQPVRQGTTRVNVGYGPMAVGPRWLAYASKSSMTMKTGRLSPQTFTSSPSLSPSSSSGG 292
Query: 179 XXXXARYAMEHSKQFAAGLS-------KTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGA 231
ARYAME SKQ A GL KTLSKYCQ++LPDGS+SP SPN++WKVG +G+
Sbjct: 293 SSFMARYAMESSKQLANGLINLGDMGYKTLSKYCQDMLPDGSTSPASPNAIWKVGGVSGS 352
Query: 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSC 291
D +NAG+V VKD V+ A++SQFKAHTSPISALCFDPSGTLLVTASV GNNIN+F+IMPS
Sbjct: 353 DAENAGMVAVKDLVSGALVSQFKAHTSPISALCFDPSGTLLVTASVCGNNINVFQIMPSR 412
Query: 292 MRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351
+ G+ Y+W SSHVHL+KLHRGITSA +QDICFS SQW+AI+SSKGTCH+FVL+
Sbjct: 413 SHNAPGDLSYEWESSHVHLFKLHRGITSAIVQDICFSQQSQWVAIISSKGTCHIFVLNSS 472
Query: 352 GGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQCXXXXXXXXXXXXXRIKYSSFGW 411
G D+ FQ +G +P P SLPWW T S S QQ RIKYSSFGW
Sbjct: 473 GSDAAFQPC--EGEEPTRLPASSLPWWFTQSLSSNQQSLSPPTAVALSVVSRIKYSSFGW 530
Query: 412 LNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHE 471
LNTVSNA+ ++ GKVFVPSGAVAAVFH S+ H Q +NSRTN+LEH+LVYTPSG+VVQHE
Sbjct: 531 LNTVSNATTAATGKVFVPSGAVAAVFHKSVTHDLQ-LNSRTNALEHILVYTPSGHVVQHE 589
Query: 472 LLPSIGMGPSDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATCD 531
LLPS+ ++G R++ S + +QEDDL+V+VEP+QWWDVCRRSDW E EE + ++ +
Sbjct: 590 LLPSVCTESPENGLRVQKTSHVQVQEDDLRVKVEPIQWWDVCRRSDWLETEERLPKSITE 649
Query: 532 GHGAVEIFQNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSG 591
+E N ++ + LD+N E K+CS K ERSH YLSN EV+++SG
Sbjct: 650 KQYDLETVSNHLTSHEDACLS-LDMNSHFSEDKYLKSCSEKPPERSHCYLSNFEVKVTSG 708
Query: 592 RLPIWQSSKISFFKMDSPRANTHASGEFEIEKVSVHEVEIKRKELLPVFDHFQCIKPSWN 651
LP+WQ+SKISF MDSPR ++ GEFEIEKV HE+EIK+K+LLPVFDHF K +
Sbjct: 709 MLPVWQNSKISFHVMDSPRDSSSTGGEFEIEKVPAHELEIKQKKLLPVFDHFHSTKATLE 768
Query: 652 NRGLAEEKRPLSPSSGPYQAEDKIAQQTVICHSNPAXXXXXXXXXXXXXRRIENLLDLDQ 711
+R K + ++G +Q KI Q + CHS P +++ENL D D
Sbjct: 769 DR--FSMKCYHTSATGSHQVNGKICQDIINCHSKPGSIESAESSEEGSTKQMENLHDSDH 826
Query: 712 VNND-KLYVPTGQTLNEIY 729
++N K +P T+N IY
Sbjct: 827 MSNSIKSSLPLYPTVNGIY 845
|
|
| TAIR|locus:2199512 ATG18H "AT1G54710" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1450 (515.5 bits), Expect = 2.0e-188, Sum P(3) = 2.0e-188
Identities = 310/557 (55%), Positives = 376/557 (67%)
Query: 1 MQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSP 60
MQP P K DG EGFR HP LL VA E + +R G VR+G D + SP
Sbjct: 122 MQPLPAKCDGVEGFRSSHPILLAVADEAKGSGPIVTSRD--GSVRNGYEDPLA----LSP 175
Query: 61 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPV 120
T VRFYS +SH Y HVLRFRS+V MVRCSPRIVAVGL +QIYCFDALTLENKFSVL+YPV
Sbjct: 176 TVVRFYSLRSHNYVHVLRFRSTVYMVRCSPRIVAVGLGSQIYCFDALTLENKFSVLSYPV 235
Query: 121 PQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNXXXXXXXXXXXXXXXX 180
PQL QG G+NVGYGPMAVG RWLAYASN+ L S+ GRLSPQN
Sbjct: 236 PQLGNQGISGVNVGYGPMAVGARWLAYASNSPLSSSIGRLSPQNVTPPGVSPSTSPNNGN 295
Query: 181 XXARYAMEHSKQFAAGLS-------KTLSKYCQELLPDGSSSPVSPNSVWKVGR---HAG 230
ARYAME SK AAGL KT+SKYCQ+L DG +S + KVGR H+
Sbjct: 296 LVARYAMESSKHLAAGLLNLGDKGYKTISKYCQDLKHDGPGPSLSSSPGRKVGRVGSHS- 354
Query: 231 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPS 290
A+ D G V+VKDF +RAII+QF+AHTSPISALCFDPSGTLLVTAS++GNNIN+FRIMP+
Sbjct: 355 AESDVVGTVIVKDFESRAIIAQFRAHTSPISALCFDPSGTLLVTASIHGNNINVFRIMPT 414
Query: 291 CMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 350
++G G YDW+SSHV LYKLHRG+TSA IQDICFS YSQWIAIVSSK TCH++VLSP
Sbjct: 415 PTKNGPGAQSYDWSSSHVPLYKLHRGMTSAVIQDICFSSYSQWIAIVSSKSTCHIYVLSP 474
Query: 351 FGGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQCXXXXXXXXXXXXXRIKYSSFG 410
FGG++ + +SQ P L P LSLPWW + S ++ RIK ++F
Sbjct: 475 FGGENVLEIRNSQFDGPTLAPTLSLPWWSSPSFMTTHFSYPPPASVTLSVVSRIKCNNF- 533
Query: 411 WLNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQH 470
+A++S +GK PSG +AAVFH S+ SQ S + +L++LLVYTPSG+VVQ+
Sbjct: 534 -----FHAASSVVGKPTFPSGCLAAVFHQSVPQESQ---SSSPALDYLLVYTPSGHVVQY 585
Query: 471 ELLPSIGMGPSDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATC 530
+L+PS+G ++ +R A S + E++L+V+VEPVQ WDVCRR+DWPEREE I T
Sbjct: 586 KLIPSLGGDQAESNTRNGATSGLT-SEEELRVKVEPVQCWDVCRRADWPEREENICGLTY 644
Query: 531 DGHGAVEIFQNKSDCED 547
G E+ + SD ED
Sbjct: 645 GGRKNAELTVDTSDSED 661
|
|
| TAIR|locus:2157523 G18F "AT5G54730" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 570 (205.7 bits), Expect = 9.7e-69, Sum P(2) = 9.7e-69
Identities = 130/309 (42%), Positives = 185/309 (59%)
Query: 50 DSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTL 109
D+ V +PT V YS +S Y H L+FR+++ VRC RIVAV A QI CFDA TL
Sbjct: 150 DNPGSETVATPTNVYVYSLKSQSYVHTLKFRATIYSVRCCSRIVAVLQAAQIDCFDAATL 209
Query: 110 ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNXXXXX 169
E + ++T + G++G VGYGP+AVGPRW+AY+ + + S+S + +
Sbjct: 210 EMDYRIVTNSIVC----GSLG--VGYGPLAVGPRWIAYSGSRIATSSSAIFTSE------ 257
Query: 170 XXXXXXXXXXXXXARYAMEHSKQFAAGLS-------KTLSKYCQELLPDGSSSPVSPNSV 222
A++A + SKQ A+G++ ++L+KYC E+LP+ P P
Sbjct: 258 --IVSLSTSSPSVAQFARDSSKQLASGIANLGDKGYRSLTKYCSEVLPN----PYIPGLK 311
Query: 223 W-KVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNN 281
VG AD ++ G+V+VKD +++I+QFKAH SPISALCFD SG LLVTAS+ G+N
Sbjct: 312 GIGVGNEKVADAESIGMVIVKDITNKSVITQFKAHKSPISALCFDQSGLLLVTASIQGHN 371
Query: 282 INIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKG 341
IN+FRIMP+ S + ++ HL++L RG T+A IQDICFS S I + SS+G
Sbjct: 372 INVFRIMPTISTSRAVK-----TTTFAHLFRLQRGFTNAVIQDICFSKDSNLIVVGSSRG 426
Query: 342 TCHVFVLSP 350
T H+F ++P
Sbjct: 427 TSHLFEINP 435
|
|
| FB|FBgn0262684 CG43154 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 303 (111.7 bits), Expect = 5.2e-23, P = 5.2e-23
Identities = 110/381 (28%), Positives = 175/381 (45%)
Query: 8 DDGCEGFRKLHPFLLVVAGEDT--NTLAPGQNRSHLGGVRDGM------MDSQSGNCVNS 59
D+ + F + P + V G + L G + LGG G+ + SG V++
Sbjct: 165 DEPVDSFAEKRPLVAFVDGGSAAASGLLAGSSGLGLGGGGGGVTTVGGSVGGVSGIGVSA 224
Query: 60 P---TAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVL 116
+AV F S ++ ++F+++V ++ + V + +I FDA TLE++ ++
Sbjct: 225 SAQFSAVNFMSLKTGVQVKTIKFKNAVLDIQANRSAVVITFHERIAVFDARTLEDRLTIT 284
Query: 117 T-YPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLS--NSGRLSPQNXXXXXXXXX 173
T YP P GIN P+A+GPRWLAYA + LL S + G +
Sbjct: 285 TCYPSP--------GINPN--PIALGPRWLAYAEHKLLHSKRSGGGCDGEGVPSYTATVL 334
Query: 174 XXXXXXXXXARYAMEHSKQFAAGLSKTLS----KYCQELLPDGSSSPVSPNS--VWKVG- 226
R E +Q AAGL+ T + S P + S V +
Sbjct: 335 NAAKSLSKGLR---EFGEQVAAGLTGTTAGSGASSKSSSFDSASGGPDAKQSGVVTIIDV 391
Query: 227 RHAGADMD-NAGIVVVKDFVTRA----IISQFKAHTSPISALCFDPSGTLLVTASVYGNN 281
+H D +G + ++ I++ F AH+ + A+ FD SG LL+TA G++
Sbjct: 392 KHPVKDYSPTSGTPLSSTAGSQGGGDPIVAHFVAHSEALVAMEFDSSGMLLLTADRRGHD 451
Query: 282 INIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKG 341
++FR+ P + + H HLY LHRG TSA +Q I FS S+W A+ + +G
Sbjct: 452 FHVFRVQPHPVGPSLA-------AVH-HLYVLHRGDTSAKVQHIAFSLDSRWAAVSTLRG 503
Query: 342 TCHVFVLSPFGGDSGFQTLSS 362
T HVF ++P+GG G +T +S
Sbjct: 504 TTHVFPITPYGGAMGVRTHTS 524
|
|
| ZFIN|ZDB-GENE-040426-1257 bcas3 "breast carcinoma amplified sequence 3" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 284 (105.0 bits), Expect = 4.2e-20, Sum P(2) = 4.2e-20
Identities = 72/223 (32%), Positives = 106/223 (47%)
Query: 135 YGPMAVGPRWLAYASNTLLLSNSGR--LSPQNXXXXXXXXXXXXXXXXXXARYAMEHSKQ 192
+ P+A+G RWLAYA N L+ + R N + Q
Sbjct: 226 FNPIALGSRWLAYAENKLIRCHQSRGGACGDNAQSYTATVISAAKTLKTGLTMVGKVVTQ 285
Query: 193 FAAGLSKTLSKYCQELLPDGSS-SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIIS 251
A L + + G+ SP P V + H + ++V +D +I+
Sbjct: 286 LAGTLPSGVPDE-EGTAHSGTRRSPHQPGVVTIIDTHT---VGEGQVLVSEDSDGEGLIA 341
Query: 252 QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH-L 310
F AH PIS + F+PSG LLVTA G++ ++F+I+ H + + S VH L
Sbjct: 342 HFPAHDKPISCMAFNPSGMLLVTADTLGHDFHVFQIL---------THPWASSQSAVHHL 392
Query: 311 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 353
Y LHRG T A +QDICFSH +W+ I + +GT HVF ++P+GG
Sbjct: 393 YTLHRGETEAKVQDICFSHDCRWVVISTLRGTSHVFPINPYGG 435
|
|
| UNIPROTKB|F1P1V9 BCAS3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 267 (99.0 bits), Expect = 2.5e-18, Sum P(2) = 2.5e-18
Identities = 68/228 (29%), Positives = 108/228 (47%)
Query: 137 PMAVGPRWLAYASNTLLLSNSGR--LSPQNXXXXXXXXXXXXXXXXXXARYAMEHSKQFA 194
P+A+G RWLAYA N L+ + R N + Q
Sbjct: 232 PIALGSRWLAYAENKLIRCHQSRGGACGDNIQSYTATVISAAKTIKTGLTMVGKVVTQLT 291
Query: 195 AGLSKTLSKYCQELLPDGS--SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQ 252
L ++ +E+L + SP+ P + + A+ ++V +D + I++
Sbjct: 292 GTLPSGATE--EEILAHSNVRRSPLVPGVITIIDTETVAE---GQVLVSEDSDSAGIVAH 346
Query: 253 FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH-LY 311
F AH PI + F+PSG LLVT G++ ++F+I+ H + + S VH LY
Sbjct: 347 FPAHEKPICCMAFNPSGMLLVTTDTLGHDFHVFQIL---------THPWSSSQSAVHHLY 397
Query: 312 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 359
LHRG T A +QDI FSH +W+ + + +GT HVF ++P+GG +T
Sbjct: 398 TLHRGETEAKVQDISFSHDCRWVVVSTLRGTSHVFPINPYGGQPCVRT 445
|
|
| UNIPROTKB|F1N6R8 BCAS3 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 266 (98.7 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 64/226 (28%), Positives = 105/226 (46%)
Query: 137 PMAVGPRWLAYASNTLLLSNSGR--LSPQNXXXXXXXXXXXXXXXXXXARYAMEHSKQFA 194
P+A+G RWLAYA N L+ + R N + Q
Sbjct: 132 PVALGSRWLAYAENKLIRCHQSRGGACGDNIQSYTATVISAAKTLKTGLTMVGKVVTQLT 191
Query: 195 AGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK 254
L +++ + + SP+ P + + + ++V +D + I++ F
Sbjct: 192 GTLPSGVTEDDVAIHSNSRRSPLVPGIITVIDTET---VGEGQVLVSEDSDSDGIVAHFP 248
Query: 255 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH-LYKL 313
AH P+ + F+ SG LLVT G++ ++F+I+ H + + S VH LY L
Sbjct: 249 AHEKPVCCMAFNTSGMLLVTTDTLGHDFHVFQIL---------THPWSSSQSAVHHLYTL 299
Query: 314 HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 359
HRG T A +QDICFSH +W+ + + +GT HVF ++P+GG +T
Sbjct: 300 HRGETEAKVQDICFSHDCRWVVVSTLRGTSHVFPINPYGGQPCVRT 345
|
|
| UNIPROTKB|F1S209 BCAS3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 266 (98.7 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 64/226 (28%), Positives = 105/226 (46%)
Query: 137 PMAVGPRWLAYASNTLLLSNSGR--LSPQNXXXXXXXXXXXXXXXXXXARYAMEHSKQFA 194
P+A+G RWLAYA N L+ + R N + Q
Sbjct: 228 PIALGSRWLAYAENKLIRCHQSRGGACGDNIQSYTATVISAAKTLKTGLTMVGKVVTQLT 287
Query: 195 AGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK 254
L +++ + + SP+ P + + + ++V +D + I++ F
Sbjct: 288 GTLPSGVTEDDVAIHSNSRRSPLVPGIITVIDTET---VGEGQVLVSEDSDSDGIVAHFP 344
Query: 255 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH-LYKL 313
AH P+ + F+ SG LLVT G++ ++F+I+ H + + S VH LY L
Sbjct: 345 AHEKPVCCMAFNTSGMLLVTTDTLGHDFHVFQIL---------THPWSSSQSAVHHLYTL 395
Query: 314 HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 359
HRG T A +QDICFSH +W+ + + +GT HVF ++P+GG +T
Sbjct: 396 HRGETEAKVQDICFSHDCRWVVVSTLRGTSHVFPINPYGGQPCVRT 441
|
|
| MGI|MGI:2385848 Bcas3 "breast carcinoma amplified sequence 3" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 264 (98.0 bits), Expect = 4.2e-18, Sum P(2) = 4.2e-18
Identities = 65/228 (28%), Positives = 105/228 (46%)
Query: 137 PMAVGPRWLAYASNTLLLSNSGR--LSPQNXXXXXXXXXXXXXXXXXXARYAMEHSKQFA 194
P+A+G RWLAYA N L+ + R N + Q
Sbjct: 232 PIALGSRWLAYAENKLIRCHQSRGGACGDNIQSYTATVLSAAKTLKSGLTMVGKVVTQLT 291
Query: 195 AGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK 254
L +++ L + SP+ P + + + ++V +D + I++ F
Sbjct: 292 GTLPSGVTEDDVALHCNSRRSPLVPGIITVIDTET---VGEGQVLVSEDSDSDGIVAHFP 348
Query: 255 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV---HLY 311
AH P+ + F+ SG LLVT G++ ++F+I+ + W+SS HLY
Sbjct: 349 AHEKPVCCMAFNTSGMLLVTTDTLGHDFHVFQILT-----------HPWSSSQCAVHHLY 397
Query: 312 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 359
LHRG T A +QDICFSH +W+ + + +GT HVF ++P+GG +T
Sbjct: 398 TLHRGETEAKVQDICFSHDCRWVVVSTLRGTSHVFPINPYGGQPCVRT 445
|
|
| UNIPROTKB|Q9H6U6 BCAS3 "Breast carcinoma-amplified sequence 3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 264 (98.0 bits), Expect = 6.8e-18, Sum P(2) = 6.8e-18
Identities = 64/228 (28%), Positives = 105/228 (46%)
Query: 137 PMAVGPRWLAYASNTLLLSNSGR--LSPQNXXXXXXXXXXXXXXXXXXARYAMEHSKQFA 194
P+A+G RWLAYA N L+ + R N + Q
Sbjct: 232 PIALGSRWLAYAENKLIRCHQSRGGACGDNIQSYTATVISAAKTLKSGLTMVGKVVTQLT 291
Query: 195 AGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK 254
L +++ + + SP+ P + + + ++V +D + I++ F
Sbjct: 292 GTLPSGVTEDDVAIHSNSRRSPLVPGIITVIDTET---VGEGQVLVSEDSDSDGIVAHFP 348
Query: 255 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV---HLY 311
AH P+ + F+ SG LLVT G++ ++F+I+ + W+SS HLY
Sbjct: 349 AHEKPVCCMAFNTSGMLLVTTDTLGHDFHVFQILT-----------HPWSSSQCAVHHLY 397
Query: 312 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 359
LHRG T A +QDICFSH +W+ + + +GT HVF ++P+GG +T
Sbjct: 398 TLHRGETEAKVQDICFSHDCRWVVVSTLRGTSHVFPINPYGGQPCVRT 445
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 882 | |||
| pfam12490 | 245 | pfam12490, BCAS3, Breast carcinoma amplified seque | 2e-85 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 0.001 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 0.003 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.004 |
| >gnl|CDD|221602 pfam12490, BCAS3, Breast carcinoma amplified sequence 3 | Back alignment and domain information |
|---|
Score = 272 bits (698), Expect = 2e-85
Identities = 113/253 (44%), Positives = 149/253 (58%), Gaps = 15/253 (5%)
Query: 393 PPPVTLSVVSRIKYSSFGWLNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRT 452
PPPVTLSVVSRIK + GWL TV+ A++S+ GK V SGAVA+VFHN +S+ +
Sbjct: 1 PPPVTLSVVSRIKNGNSGWLGTVTGAASSATGKPLVVSGAVASVFHNCSGKNSESADGIK 60
Query: 453 -NSLEHLLVYTPSGYVVQHELLPSIGMGPSDDGSRIRAASLMCLQEDDLQVRVEPVQWWD 511
NS +HLLV++PSG+++Q+ L PS+G G S + R S + E +L++ VEPVQ WD
Sbjct: 61 SNSKDHLLVFSPSGHLIQYLLRPSVG-GDSGEIPRNGVPSESQIDETELRLTVEPVQQWD 119
Query: 512 VCRRSDWPEREEFISEATCDGHGAVEIFQNKSDCEDNYGIDFLDINDCIVEKSTFKNCSV 571
VCRRS+WPEREE ++ + + + I+D V K S
Sbjct: 120 VCRRSNWPEREENVAPLGENNPLDADAKVEPEVGRKGNSVHP--ISDSAVGK-----EST 172
Query: 572 KSYERSHWYLSNAEVQMSSGR-LPIWQSSKISFFKMDSPRANT-----HASGEFEIEKVS 625
S E+ H YLSNAEVQ SG P+WQ K SF+ M SP SGE EIEK+
Sbjct: 173 SSEEKDHLYLSNAEVQTHSGPHRPLWQGPKFSFYVMQSPTGKELENSGSLSGEIEIEKLP 232
Query: 626 VHEVEIKRKELLP 638
EVEI+RK+L+P
Sbjct: 233 TREVEIRRKDLVP 245
|
This domain family is found in eukaryotes, and is typically between 229 and 245 amino acids in length. The proteins in this family have been shown to be proto-oncogenes implicated in the development of breast cancer. Length = 245 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.001
Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 246 TRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIF 285
+ ++ K HT P++++ F P G L + S I ++
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGS-DDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 20/97 (20%)
Query: 250 ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 309
K HT ++ + F P G LL T S I ++ + +
Sbjct: 2 RRTLKGHTGGVTCVAFSPDGKLLATGS-GDGTIKVWDL---------------ETGELLR 45
Query: 310 LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVF 346
K H + ++D+ S ++A SS T ++
Sbjct: 46 TLKGH----TGPVRDVAASADGTYLASGSSDKTIRLW 78
|
Length = 289 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 35.4 bits (82), Expect = 0.004
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 249 IISQFKAHTSPISALCFDPSGTLLVTAS 276
++ K HT P++++ F P G LL + S
Sbjct: 3 LLRTLKGHTGPVTSVAFSPDGNLLASGS 30
|
Length = 39 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 882 | |||
| PF12490 | 251 | BCAS3: Breast carcinoma amplified sequence 3 ; Int | 100.0 | |
| KOG2109 | 788 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.97 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.85 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.85 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.85 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.83 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.83 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.77 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.77 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.76 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.75 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.73 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.73 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.73 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.73 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.72 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.72 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.71 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.71 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.7 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.69 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.68 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.68 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.68 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.68 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.67 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.66 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.65 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.63 | |
| PTZ00421 | 493 | coronin; Provisional | 99.63 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.62 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.62 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.62 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.62 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.62 | |
| PTZ00420 | 568 | coronin; Provisional | 99.61 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.61 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.61 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.6 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.6 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.6 | |
| PTZ00421 | 493 | coronin; Provisional | 99.59 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.58 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.58 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.58 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.57 | |
| PTZ00420 | 568 | coronin; Provisional | 99.56 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.55 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.55 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.54 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.54 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.51 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.5 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.5 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.5 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.49 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.47 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.47 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.46 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.46 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.46 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.45 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.45 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.45 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.44 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.44 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.43 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.43 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.43 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.41 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.41 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.41 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.4 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.39 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.38 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.38 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.38 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.38 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.37 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.37 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.37 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.37 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.37 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.36 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.36 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.34 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.33 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.33 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.32 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.32 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.31 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.31 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.3 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.3 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.3 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.29 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.29 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.27 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.27 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.27 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.26 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.25 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.23 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.23 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.22 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.22 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.22 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.19 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.17 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.17 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.15 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.15 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.13 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.12 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.11 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.11 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.09 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.09 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.09 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.08 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.08 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.07 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.05 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.04 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.01 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.01 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.01 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.0 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 98.99 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 98.99 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 98.98 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 98.98 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 98.98 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 98.97 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 98.97 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 98.97 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 98.97 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 98.97 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 98.97 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 98.94 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 98.94 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 98.91 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 98.9 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 98.89 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 98.89 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 98.88 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 98.87 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 98.87 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 98.86 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 98.85 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 98.84 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 98.83 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.82 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 98.81 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 98.81 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 98.81 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 98.78 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 98.78 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 98.76 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 98.72 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 98.7 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 98.7 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 98.7 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 98.69 | |
| KOG2109 | 788 | consensus WD40 repeat protein [General function pr | 98.67 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.67 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 98.65 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.65 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 98.64 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 98.61 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 98.61 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 98.6 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 98.59 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.59 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 98.58 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 98.58 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 98.57 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 98.54 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 98.52 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 98.52 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.52 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 98.52 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 98.51 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 98.51 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.5 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.49 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.46 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 98.45 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 98.45 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.44 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 98.43 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 98.38 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 98.36 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 98.34 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.31 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.3 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.29 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 98.29 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.28 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 98.27 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 98.26 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 98.26 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.25 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 98.24 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 98.22 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 98.21 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.2 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 98.19 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 98.18 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.17 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 98.16 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 98.15 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 98.13 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 98.12 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.11 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 98.1 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 98.06 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.04 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 98.04 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.04 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 98.0 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 97.99 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 97.97 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 97.96 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 97.95 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 97.94 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 97.93 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 97.92 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 97.91 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 97.89 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 97.87 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 97.84 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 97.83 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 97.77 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 97.73 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 97.68 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 97.66 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 97.64 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.54 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 97.51 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 97.47 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 97.44 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 97.43 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 97.41 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 97.36 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.32 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 97.31 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 97.23 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 97.22 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 97.15 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 97.13 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 97.13 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 97.12 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 97.12 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 97.12 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.1 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 97.1 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 97.09 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 97.0 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 96.99 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 96.96 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.94 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 96.84 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 96.7 | |
| KOG4415 | 247 | consensus Uncharacterized conserved protein [Funct | 96.67 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 96.64 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 96.58 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 96.51 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 96.43 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 96.4 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 96.39 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 96.33 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 96.3 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 96.2 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 96.2 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 96.18 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 96.01 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 95.87 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 95.77 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 95.73 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 95.68 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 95.55 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 95.33 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 95.16 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 95.1 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 94.92 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 94.58 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 94.38 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 94.38 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 94.15 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 93.87 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 93.56 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 93.55 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 93.22 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 93.19 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 93.18 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 92.98 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 92.95 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 92.29 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 92.2 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 91.91 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 91.87 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 91.84 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 91.72 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 91.4 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 91.4 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 91.3 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 91.26 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 91.14 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 90.79 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 90.64 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 90.42 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 89.7 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 89.09 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 88.55 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 87.92 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 87.7 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 87.12 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 86.99 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 86.62 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 86.6 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 85.95 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 85.95 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 85.75 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 84.33 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 84.12 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 83.94 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 83.41 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 82.96 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 82.79 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 82.72 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 82.2 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 82.12 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 81.15 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 80.63 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 80.57 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 80.5 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 80.43 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 80.4 |
| >PF12490 BCAS3: Breast carcinoma amplified sequence 3 ; InterPro: IPR022175 This domain family is found in eukaryotes, and is typically between 229 and 245 amino acids in length | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-53 Score=447.49 Aligned_cols=239 Identities=47% Similarity=0.751 Sum_probs=203.8
Q ss_pred CCCccccceeeeeccC-ccccccccccccccCC-ccccccceEEeeeccCccccccccccc-cCCcccEEEEcCCccEEE
Q 002778 393 PPPVTLSVVSRIKYSS-FGWLNTVSNASASSMG-KVFVPSGAVAAVFHNSIAHSSQHVNSR-TNSLEHLLVYTPSGYVVQ 469 (882)
Q Consensus 393 ~~~~~ls~vsrIk~~~-~gw~~~vs~~~s~at~-~~~~ps~~va~~Fh~~~~~~~~~~~~~-~~~~~~LlV~Sp~G~Li~ 469 (882)
|+|++|++|+|||+++ .||+|+++++++++++ +...+++++|+.||++......+..++ ...+++|||++|+|+|+|
T Consensus 1 P~Pv~l~~vsrIK~~~~~g~~~tv~~aassa~g~~~~~~sga~a~~f~~~~~~~~~~~~~~~~~~~~~LlV~spsG~Liq 80 (251)
T PF12490_consen 1 PPPVTLSVVSRIKQGNTLGWLNTVSNAASSATGGKPSSVSGAFASSFHNSKGSSSEPSDSSSSKAVESLLVFSPSGHLIQ 80 (251)
T ss_pred CCCEEechHHhhcCCccccccccccccccchhcCCcccceeEEccccccCCCCcccccccccccccceEEEECCCCcEEE
Confidence 5789999999999998 8999999999888888 889999999999999966666655554 788999999999999999
Q ss_pred EecccCCCCCCCCCCCccccccccccCCCceeeeecccccceeeccCCCCcccc-cccccccCCCCceeeeeccCcCCcC
Q 002778 470 HELLPSIGMGPSDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREE-FISEATCDGHGAVEIFQNKSDCEDN 548 (882)
Q Consensus 470 Y~L~p~~g~e~~~~~~~~~~~~~~~~~~~~l~~~vep~~~W~vcR~~~w~E~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (882)
|.|+|+.+++...++++.+++....++|++|||+|||+|||||||+++|+||++ .+.++...++....++.+..++++
T Consensus 81 y~L~p~~~~~~~~~~~~~~~~~~~~~~~~~l~l~vep~~~Wdl~R~~~w~e~~~d~~~~~~~~~~~~~~~~~~~~~~~~- 159 (251)
T PF12490_consen 81 YELRPSPGSDPTEGGSGNGPPSESQMDDTELRLVVEPVQQWDLCRRPNWPEREEDCVPPLPENNPLDSASKIDPSDCRK- 159 (251)
T ss_pred EEEeeccccCcccccccccCccccccccCcceEEeeeccceeEeccccCCccchhccCCCCCCCHhhhhhhcccccccc-
Confidence 999999999998888898887655555689999999999999999999999999 666666666666544444444422
Q ss_pred CCccccccCcccccccccccCCCCccccceeeeeeeeEEeccCC-ccccccceeEEEEcCCccc-----ccCCC--ceeE
Q 002778 549 YGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGR-LPIWQSSKISFFKMDSPRA-----NTHAS--GEFE 620 (882)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~yls~aEvq~~~~~-~piW~~~~i~F~~m~~~~~-----~~~~~--~e~e 620 (882)
+...++++...+.+. +++++|++||||||||||||+++ +||||||||+||+|.++.. ++..+ ||||
T Consensus 160 -~~~~~~~~~~~~~~~-----~~~~~e~~~~wlS~vEi~th~~phrpLW~gpQf~F~~~~~~~~~~~~~s~~~~~~~e~E 233 (251)
T PF12490_consen 160 -GNSVNPSNDSYVSKE-----SDSPEERDHWWLSNVEIQTHSGPHRPLWMGPQFSFKTMSSPSSSELNISSSSGEAGEIE 233 (251)
T ss_pred -cCCcccccccccccc-----CCCcccccCcEEeeeeeEeccCCccccccCCcEEEEEecCCCCccccccccccccCcee
Confidence 455666655455555 89999999999999999999999 7999999999999998763 34566 9999
Q ss_pred EEEeeceeeeeeccCccc
Q 002778 621 IEKVSVHEVEIKRKELLP 638 (882)
Q Consensus 621 ie~~~~~~~~~r~k~l~p 638 (882)
|||||+|+||+|||||||
T Consensus 234 IE~~~~~~ve~r~k~l~p 251 (251)
T PF12490_consen 234 IEKIPTREVEIRRKDLLP 251 (251)
T ss_pred eccccccceeeeccccCC
Confidence 999999999999999998
|
The proteins in this family have been shown to be proto-oncogenes implicated in the development of breast cancer. |
| >KOG2109 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-45 Score=414.55 Aligned_cols=536 Identities=30% Similarity=0.337 Sum_probs=393.2
Q ss_pred CCCCCCCCcccccccccCceEEEEecCCCCCCCCCcccccccccccCccCCCCCcccccCCeEEEEECCCCeEEEEEEcC
Q 002778 1 MQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR 80 (882)
Q Consensus 1 ~~~~p~~~~~~d~f~~~~pll~vv~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~sp~tVrlWDlkTG~~V~tLkf~ 80 (882)
|+|.|+.|.+.++|+.+||+++||..+.. .+..-.. +.|+.. ...+....++|+++..+++.++|+
T Consensus 92 m~~~pl~sg~~~gf~ss~avpavv~~t~S---~p~I~~S-----~~Gse~------d~t~an~~v~dl~S~~yah~l~fR 157 (788)
T KOG2109|consen 92 MDKSPLSSGPDSGFESSDAVPAVVRTTTS---PPTIPPS-----QTGSEQ------DSTQANEMVVDLMSLDYAHALPFR 157 (788)
T ss_pred cCCCCccCCCCCccccCCceeeecccccC---CCcCCCC-----CCccee------cccccccceeccccccchhccccc
Confidence 89999999999999999999998772222 2211101 222211 012344568899999999999988
Q ss_pred CcEEEEEEcCCEEEEEECCeEEEEECCCCceeEEEecCCCcccCCCCcccccccceeeEEcCcEEEEeCCCeEeccCCCC
Q 002778 81 SSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRL 160 (882)
Q Consensus 81 s~V~sV~~S~rlLAV~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g~lAlspR~LAyss~~v~lwdtG~v 160 (882)
+|+|||+.|++.-+.+.+++.|.. ..+++|+++++++||+||+.....- +
T Consensus 158 -------------------qi~CfDa~tle~d~~~~~n~~p~l------~l~VGYGplaVg~rWaaya~~~a~~-----v 207 (788)
T KOG2109|consen 158 -------------------QIHCFDAPTLEIDSMNTINTKPRL------LLSVGYGPLAVGRRWAAYAQTLANQ-----V 207 (788)
T ss_pred -------------------ccccccCcccCCchhhcccccccc------ceeeccccccceeeeeeeccCcchh-----h
Confidence 899999999988888887777643 2467899999999999999753211 1
Q ss_pred CCccCCC-CCCCCCcCCCCCccEEEeeccchhhhhcccc-------ccccccccccCCCCCCCCccCCC---cccccccc
Q 002778 161 SPQNLTP-SGVSPSTSPGGSSLVARYAMEHSKQFAAGLS-------KTLSKYCQELLPDGSSSPVSPNS---VWKVGRHA 229 (882)
Q Consensus 161 s~q~lt~-~~vs~s~SP~~GslVA~~A~essk~la~Gli-------ktLs~~~~~l~pdgs~s~~S~ss---~~k~~~la 229 (882)
+.+.+++ +.+++++|+..+-.+|.+|.|.++++|.++. +.+++||+..++.+-.....-.. .++++..
T Consensus 208 ss~~Vt~~~~VspttSs~~~~~va~~A~essk~lA~gl~nlgDkGy~~isglc~g~~~~g~gpglgg~~~~~vGrvg~v- 286 (788)
T KOG2109|consen 208 SSHLVTMGMSVSPTTSSQITAEVAEWAQESSKELAGGLVNLGDKGYVLISGLCRGSYQIGTGPGLGGFEEVLVGRVGPV- 286 (788)
T ss_pred hhccccccccccCCCCCchhHHHHHhhhhhhHHHhhhhcccccchHHHHHHHhhcccCCCCCCCCCCcCceeccccccc-
Confidence 2255666 7888988888888999999999999999966 58899999866544221111111 1111111
Q ss_pred ccccC-CCce--EEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCc
Q 002778 230 GADMD-NAGI--VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS 306 (882)
Q Consensus 230 ~~tgs-~dG~--V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss 306 (882)
++. .-|+ +.+-|+.+...+.+|++|++||++|+|+++|.+|++++..|+.|++|++++.....+.+..+.+|.
T Consensus 287 --saesV~g~~~vivkdf~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRimet~~t~~~~~qs~~~s-- 362 (788)
T KOG2109|consen 287 --SAESVLGNNLVIVKDFDSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIMETVCTVNVSDQSLVVS-- 362 (788)
T ss_pred --cceeecccceEEeecccchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEeccccccccccccccccc--
Confidence 111 2355 889999999999999999999999999999999999999999999999998654443332233321
Q ss_pred ccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccccccccCCCCCCcccCCCCCCcccCCCCccc
Q 002778 307 HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISE 386 (882)
Q Consensus 307 ~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~H~~~~~~~~~sp~~~lpw~~~s~~~~~ 386 (882)
.||++.+.|++|+|+.+.+|++.+|.+|+= |.+.+...+|||-.+++...
T Consensus 363 -------~ra~t~aviqdicfs~~s~~r~~gsc~Ge~-----------------------P~ls~t~~lp~~A~~Sl~~g 412 (788)
T KOG2109|consen 363 -------PRANTAAVIQDICFSEVSTIRTAGSCEGEP-----------------------PALSLTCQLPAYADTSLDLG 412 (788)
T ss_pred -------hhcchHHHHHHHhhhhhcceEeecccCCCC-----------------------cccccccccchhhchhhhcc
Confidence 489999999999999999999999966543 34556667899999999877
Q ss_pred ccccCCCCCccccceeeeeccCccccccccccccccCCccccccceEEeeeccCccccccccccccCCcccEEEEcCCc-
Q 002778 387 QQCVLPPPPVTLSVVSRIKYSSFGWLNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSG- 465 (882)
Q Consensus 387 Q~~~~~~~~~~ls~vsrIk~~~~gw~~~vs~~~s~at~~~~~ps~~va~~Fh~~~~~~~~~~~~~~~~~~~LlV~Sp~G- 465 (882)
-+....+.+..+...++++..+. | .+++-.++.-.|..+...+||....... .+.++.+..|||+.|.|
T Consensus 413 l~s~g~~aa~gla~~sag~~a~s----~---~asSv~s~s~~pd~ks~gv~~gsv~k~~---q~~~~~l~~llv~~psGd 482 (788)
T KOG2109|consen 413 LQSSGGLAAEGLATSSAGYTAHS----Y---TASSVFSRSVKPDSKSVGVGSGSVTKAN---QGVITVLNLLLVGEPSGD 482 (788)
T ss_pred ccccCcccceeeeeccccccccc----c---ccceeeccccccchhhccceeeeccccC---ccchhhhhheeeecCCCC
Confidence 77777777777777777776432 1 2222233445666767788887743221 24567789999999999
Q ss_pred cEEEEecccCCCCCCCCC-CCccccccccccCCCc-eeeeecccccceeeccCCCCcccccccccccCCCCceeeeeccC
Q 002778 466 YVVQHELLPSIGMGPSDD-GSRIRAASLMCLQEDD-LQVRVEPVQWWDVCRRSDWPEREEFISEATCDGHGAVEIFQNKS 543 (882)
Q Consensus 466 ~Li~Y~L~p~~g~e~~~~-~~~~~~~~~~~~~~~~-l~~~vep~~~W~vcR~~~w~E~~~~~~~~~~~~~~~~~~~~~~~ 543 (882)
.++||-|.+.+++.-.+. ..+.+-. .+...+++ .++.|+|.+.|+.||+-+|+|++++ +.+ ..|.+....
T Consensus 483 ~vvqh~vahs~~gv~~Ef~~~~~l~l-Sad~~e~ef~~f~V~Ph~~wsslaav~hly~l~r--G~T-----saKv~~~af 554 (788)
T KOG2109|consen 483 GVVQHYVAHSDPGVYIEFSPDQRLVL-SADANENEFNIFLVMPHATWSSLAAVQHLYKLNR--GST-----SAKVVSTAF 554 (788)
T ss_pred ceeEEEeeccCccceeeeccccccee-cccccccccceEEeecccccHHHhhhhhhhhccC--CCc-----cceeeeeEe
Confidence 999999999988765443 3333322 23344677 9999999999999999999999997 333 335665555
Q ss_pred cCCcCCCccccccCcccccccccccCCCCccccceeeeeeeeEEeccCCccccccceeEEEEcCCccc------ccCCCc
Q 002778 544 DCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGRLPIWQSSKISFFKMDSPRA------NTHASG 617 (882)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~yls~aEvq~~~~~~piW~~~~i~F~~m~~~~~------~~~~~~ 617 (882)
+. +..-. .++. +...+.-+.+|-|+-+||+++|.. +|||+|.+ .||-|..+.. +...++
T Consensus 555 s~-dsrw~-------A~~t-----~~~TthVfk~hpYgg~aeqrth~~-lp~vnk~s-rFhrsagl~~d~~~~~s~ggg~ 619 (788)
T KOG2109|consen 555 SE-DSRWL-------AITT-----NHATTHVFKVHPYGGKAEQRTHGD-LPFVNKES-RFHRSAGLTDDADVTASIGGGK 619 (788)
T ss_pred ec-chhhh-------hhhh-----cCCceeeeeeccccccccceecCC-chhccchh-hhccccCCCccccccccCCCCc
Confidence 53 21000 0111 225566788999999999999999 99999999 9999998664 224567
Q ss_pred eeEEEEeeceeeeeeccCcccccccccccccccCCc
Q 002778 618 EFEIEKVSVHEVEIKRKELLPVFDHFQCIKPSWNNR 653 (882)
Q Consensus 618 e~eie~~~~~~~~~r~k~l~p~~~~~~~~~~~~~~~ 653 (882)
|.||+++-++++|+|+||||||++ +.+.+.|
T Consensus 620 e~ei~~~~~~t~e~r~~dllPvy~-----~tS~rsr 650 (788)
T KOG2109|consen 620 EREIADSCSYTKEHRIADLLPVYA-----KTSGRSR 650 (788)
T ss_pred cceecccccccccccccccCCccc-----ccCcccc
Confidence 999999999999999999999999 5555556
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=340.49 Aligned_cols=261 Identities=29% Similarity=0.447 Sum_probs=223.9
Q ss_pred cCCeEEEEECCCCeEEEEEEcCCcEEEEEEcCCEEEEEECCeEEEEECCCCceeEEEecC-CCcccCCCCccccccccee
Q 002778 59 SPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTY-PVPQLAGQGAVGINVGYGP 137 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLkf~s~V~sV~~S~rlLAV~~d~qI~IWDa~T~e~l~tL~t~-p~p~~~~~~~~g~~~~~g~ 137 (882)
.|+.+++++++.+..++.+.|++.|.+|++|+++|+|++.++|||||+.+++.++++.+. |+| .+.
T Consensus 66 qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~-------------~gl 132 (391)
T KOG2110|consen 66 QPRKLKVVHFKKKTTICEIFFPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNP-------------KGL 132 (391)
T ss_pred CCceEEEEEcccCceEEEEecCCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCc-------------cce
Confidence 358899999999999999999999999999999999999999999999999999999875 554 356
Q ss_pred eEEcC----cEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCC
Q 002778 138 MAVGP----RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS 213 (882)
Q Consensus 138 lAlsp----R~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs 213 (882)
+|++| .+|||+++
T Consensus 133 ~AlS~n~~n~ylAyp~s--------------------------------------------------------------- 149 (391)
T KOG2110|consen 133 CALSPNNANCYLAYPGS--------------------------------------------------------------- 149 (391)
T ss_pred EeeccCCCCceEEecCC---------------------------------------------------------------
Confidence 77765 57777642
Q ss_pred CCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCccc
Q 002778 214 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR 293 (882)
Q Consensus 214 ~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~ 293 (882)
-..|.|.|||+.+.+.+..|.+|.++|.||+|+|+|++|||||.+|++||||.+..
T Consensus 150 --------------------~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~---- 205 (391)
T KOG2110|consen 150 --------------------TTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE---- 205 (391)
T ss_pred --------------------CCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCC----
Confidence 11478999999999999999999999999999999999999999999999999953
Q ss_pred CCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccccccccCCCCCCcccCCC
Q 002778 294 SGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPVL 373 (882)
Q Consensus 294 ~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~H~~~~~~~~~sp~~ 373 (882)
| .++|+||||...+.|++|+||||+++|+++|+.+|||||.|+.... .+.
T Consensus 206 ---G----------~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~----------------~~~- 255 (391)
T KOG2110|consen 206 ---G----------QKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSN----------------NPP- 255 (391)
T ss_pred ---c----------cEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEeccccc----------------CCC-
Confidence 4 6999999999988999999999999999999999999999986320 000
Q ss_pred CCCcccCCCCcccccccCCCCCccccceeeeeccCccccccccccccccCCccccccceEEeeeccCcc--cccccccc-
Q 002778 374 SLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTVSNASASSMGKVFVPSGAVAAVFHNSIA--HSSQHVNS- 450 (882)
Q Consensus 374 ~lpw~~~s~~~~~Q~~~~~~~~~~ls~vsrIk~~~~gw~~~vs~~~s~at~~~~~ps~~va~~Fh~~~~--~~~~~~~~- 450 (882)
-.|.+ ..+|.+.+++++.+ |+|++ |+.+++++|. +.+++..+
T Consensus 256 -----------------~~p~~------------~~~~~~~~sk~~~s-----ylps~-V~~~~~~~R~FAt~~l~~s~~ 300 (391)
T KOG2110|consen 256 -----------------ESPTA------------GTSWFGKVSKAATS-----YLPSQ-VSSVLDQSRKFATAKLPESGR 300 (391)
T ss_pred -----------------CCCCC------------CCcccchhhhhhhh-----hcchh-hhhhhhhccceeEEEccCCCc
Confidence 01111 24688888886665 99988 9999999997 56776655
Q ss_pred -------ccCCcccEEEEcCCccEEEEecccCCCCCCCCCC
Q 002778 451 -------RTNSLEHLLVYTPSGYVVQHELLPSIGMGPSDDG 484 (882)
Q Consensus 451 -------~~~~~~~LlV~Sp~G~Li~Y~L~p~~g~e~~~~~ 484 (882)
++++.++++|++-||+||.|+|+|+.||||.++.
T Consensus 301 ~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~~gGec~lik 341 (391)
T KOG2110|consen 301 KNICSLSSIQKIPRVLVASYDGHLYSYRLPPKEGGECALIK 341 (391)
T ss_pred cceEEeeccCCCCEEEEEEcCCeEEEEEcCCCCCceeEEEE
Confidence 5678899999999999999999999999998865
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-30 Score=271.06 Aligned_cols=251 Identities=26% Similarity=0.306 Sum_probs=202.2
Q ss_pred ccCCeEEEEECCCCeEEEEEEcCCcEEEEEEcCCEEEEEECCeEEEEECC-CCceeEEEecCCCcccCCCCcccccccce
Q 002778 58 NSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDAL-TLENKFSVLTYPVPQLAGQGAVGINVGYG 136 (882)
Q Consensus 58 ~sp~tVrlWDlkTG~~V~tLkf~s~V~sV~~S~rlLAV~~d~qI~IWDa~-T~e~l~tL~t~p~p~~~~~~~~g~~~~~g 136 (882)
++|++|.|||-...+++.++.|.+.|.+|++++++|+|+++++|+||... +.+.++.+.+..+|. |
T Consensus 72 y~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPk-------------G 138 (346)
T KOG2111|consen 72 YPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPK-------------G 138 (346)
T ss_pred CCCceEEEEecccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCC-------------c
Confidence 58999999999999999999999999999999999999999999999987 788899999877762 3
Q ss_pred eeEEcC----cEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCC
Q 002778 137 PMAVGP----RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG 212 (882)
Q Consensus 137 ~lAlsp----R~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdg 212 (882)
.+++.| .+|||+
T Consensus 139 lC~~~~~~~k~~LafP---------------------------------------------------------------- 154 (346)
T KOG2111|consen 139 LCSLCPTSNKSLLAFP---------------------------------------------------------------- 154 (346)
T ss_pred eEeecCCCCceEEEcC----------------------------------------------------------------
Confidence 454432 222222
Q ss_pred CCCCccCCCccccccccccccCCCceEEEEECCCCcE--EEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCC
Q 002778 213 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI--ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPS 290 (882)
Q Consensus 213 s~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~--v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~ 290 (882)
|...|.|+|-|+...+. ...+.||.+.|.+++++-+|++|||||.+||.|||||..+
T Consensus 155 --------------------g~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~- 213 (346)
T KOG2111|consen 155 --------------------GFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTED- 213 (346)
T ss_pred --------------------CCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCC-
Confidence 23457899999877654 4788999999999999999999999999999999999975
Q ss_pred cccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccccccccCCCCCCccc
Q 002778 291 CMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLF 370 (882)
Q Consensus 291 ~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~H~~~~~~~~~s 370 (882)
| ..+++||||...|.|++|+||||+.|||++|++||+|||.+.... .+.+.|+ .++
T Consensus 214 ------g----------~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~--~~~~~~S------Sl~ 269 (346)
T KOG2111|consen 214 ------G----------TLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE--NTEDESS------SLS 269 (346)
T ss_pred ------C----------cEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC--CCccccc------ccc
Confidence 4 589999999999999999999999999999999999999997532 2223332 122
Q ss_pred CC-CCCCcccCCCCcccccccCCCCCccccceeeeeccCccccccccccccccCCccccccceEEeeeccCccccccccc
Q 002778 371 PV-LSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVN 449 (882)
Q Consensus 371 p~-~~lpw~~~s~~~~~Q~~~~~~~~~~ls~vsrIk~~~~gw~~~vs~~~s~at~~~~~ps~~va~~Fh~~~~~~~~~~~ 449 (882)
.. ..||.|+.|+|+++|+.++..+ + +..-|..+
T Consensus 270 ~~~~~lpky~~S~wS~~~f~l~~~~------------------------------------~-~~~~fg~~--------- 303 (346)
T KOG2111|consen 270 FKRLVLPKYFSSEWSFAKFQLPQGT------------------------------------Q-CIIAFGSE--------- 303 (346)
T ss_pred ccccccchhcccceeEEEEEccCCC------------------------------------c-EEEEecCC---------
Confidence 22 3589999999999886665332 2 22223333
Q ss_pred cccCCcccEEEEcCCccEEEEecccCCCCCCC
Q 002778 450 SRTNSLEHLLVYTPSGYVVQHELLPSIGMGPS 481 (882)
Q Consensus 450 ~~~~~~~~LlV~Sp~G~Li~Y~L~p~~g~e~~ 481 (882)
+ ..+++..-||..+.|.++|.+||+|.
T Consensus 304 ---~--nsvi~i~~Dgsy~k~~f~~~~~g~~~ 330 (346)
T KOG2111|consen 304 ---T--NTVIAICADGSYYKFKFDPKNGGESS 330 (346)
T ss_pred ---C--CeEEEEEeCCcEEEEEeccccccchh
Confidence 1 44888899999999999999999994
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.2e-21 Score=219.78 Aligned_cols=100 Identities=25% Similarity=0.396 Sum_probs=88.3
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEE
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~ 311 (882)
+|+.|.+||+||+.+|..++.|.+|+++|.+|+|||+|++||+|+.+|. |+|||+.. | ..+.
T Consensus 552 TGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~-I~iWDl~~-------~----------~~v~ 613 (707)
T KOG0263|consen 552 TGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGL-IKIWDLAN-------G----------SLVK 613 (707)
T ss_pred cCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCc-EEEEEcCC-------C----------cchh
Confidence 5678999999999999999999999999999999999999999999775 99999953 2 2344
Q ss_pred EEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 312 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 312 ~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
.+ +||+ +.|++|.||.||..||+++.|.+|++||+...
T Consensus 614 ~l-~~Ht-~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 614 QL-KGHT-GTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred hh-hccc-CceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 44 6774 57999999999999999999999999999754
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6e-21 Score=207.03 Aligned_cols=229 Identities=17% Similarity=0.143 Sum_probs=164.7
Q ss_pred cCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC--CEEEEE-ECCeEEEEECCCCcee-EEEecCCCcccCCCCcccccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVG-LATQIYCFDALTLENK-FSVLTYPVPQLAGQGAVGINV 133 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~--rlLAV~-~d~qI~IWDa~T~e~l-~tL~t~p~p~~~~~~~~g~~~ 133 (882)
-++||||||+.|....++.+ |.+.|.+|+++| +.||.| .+++|.+||..+++++ ..|.+|..+.. ..
T Consensus 135 GD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It--------~L 206 (480)
T KOG0271|consen 135 GDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWIT--------AL 206 (480)
T ss_pred CCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCccccee--------EE
Confidence 36999999999999999998 999999999998 578876 5889999999999864 55666765311 11
Q ss_pred cceeeEEcC--cEEEEeC--CCeEeccC-CCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhcccccccccccccc
Q 002778 134 GYGPMAVGP--RWLAYAS--NTLLLSNS-GRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQEL 208 (882)
Q Consensus 134 ~~g~lAlsp--R~LAyss--~~v~lwdt-G~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l 208 (882)
.+.++-+.| |.||.++ +.++||++ ++.. + ..+++|....
T Consensus 207 awep~hl~p~~r~las~skDg~vrIWd~~~~~~--------------------~----------------~~lsgHT~~V 250 (480)
T KOG0271|consen 207 AWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTC--------------------V----------------RTLSGHTASV 250 (480)
T ss_pred eecccccCCCccceecccCCCCEEEEEccCceE--------------------E----------------EEeccCccce
Confidence 222333333 8888775 47899985 1110 0 0111111100
Q ss_pred CCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEEC-----------CCCCE------
Q 002778 209 LPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFD-----------PSGTL------ 271 (882)
Q Consensus 209 ~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFS-----------PdGtl------ 271 (882)
. +.--++..+. .++++|++|++|+...|+++..|++|...|+.|++| |.|+.
T Consensus 251 T--------CvrwGG~gli---ySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se 319 (480)
T KOG0271|consen 251 T--------CVRWGGEGLI---YSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSE 319 (480)
T ss_pred E--------EEEEcCCceE---EecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHH
Confidence 0 0000011111 167899999999999999999999999999999866 55655
Q ss_pred -------------------EEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCC
Q 002778 272 -------------------LVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ 332 (882)
Q Consensus 272 -------------------LATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~ 332 (882)
|++||.|.+ +.+|+-.. +.+.+.++ .|| .+.|..++||||++
T Consensus 320 ~~~~Al~rY~~~~~~~~erlVSgsDd~t-lflW~p~~----------------~kkpi~rm-tgH-q~lVn~V~fSPd~r 380 (480)
T KOG0271|consen 320 EQKKALERYEAVLKDSGERLVSGSDDFT-LFLWNPFK----------------SKKPITRM-TGH-QALVNHVSFSPDGR 380 (480)
T ss_pred HHHHHHHHHHHhhccCcceeEEecCCce-EEEecccc----------------cccchhhh-hch-hhheeeEEECCCcc
Confidence 999998776 77999531 11233332 354 46899999999999
Q ss_pred EEEEEeCCCeEEEEECCCCCCcccccccc
Q 002778 333 WIAIVSSKGTCHVFVLSPFGGDSGFQTLS 361 (882)
Q Consensus 333 ~LAsgS~DGTVhIWdI~~~gg~~~l~~H~ 361 (882)
|||++|.|..|+||+-.+++-..+||+|-
T Consensus 381 ~IASaSFDkSVkLW~g~tGk~lasfRGHv 409 (480)
T KOG0271|consen 381 YIASASFDKSVKLWDGRTGKFLASFRGHV 409 (480)
T ss_pred EEEEeecccceeeeeCCCcchhhhhhhcc
Confidence 99999999999999999999999999995
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-20 Score=206.76 Aligned_cols=233 Identities=15% Similarity=0.144 Sum_probs=181.2
Q ss_pred cCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcCC----EEEEE-ECCeEEEEECCCCceeEEEecCCCcccCCCCccccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSPR----IVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGIN 132 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~r----lLAV~-~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~ 132 (882)
..+.++||+..++..+++|. |.+.|.++.|.|. -||++ .|+.+++|++.+-+.+..|.+|..
T Consensus 195 wsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~------------ 262 (459)
T KOG0272|consen 195 WSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLA------------ 262 (459)
T ss_pred cCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchh------------
Confidence 56899999999999999998 8999999999874 56665 588999999998888888888765
Q ss_pred ccceeeEEcC--cEEEEeC--CCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhcccccccccccccc
Q 002778 133 VGYGPMAVGP--RWLAYAS--NTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQEL 208 (882)
Q Consensus 133 ~~~g~lAlsp--R~LAyss--~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l 208 (882)
.+..++|.| ++|+.++ .+-++||... + +.+ +
T Consensus 263 -RVs~VafHPsG~~L~TasfD~tWRlWD~~t-------------------k-----------~El--------------L 297 (459)
T KOG0272|consen 263 -RVSRVAFHPSGKFLGTASFDSTWRLWDLET-------------------K-----------SEL--------------L 297 (459)
T ss_pred -hheeeeecCCCceeeecccccchhhccccc-------------------c-----------hhh--------------H
Confidence 135678877 9998775 3567887410 0 000 0
Q ss_pred CCCCC---CCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEE
Q 002778 209 LPDGS---SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIF 285 (882)
Q Consensus 209 ~pdgs---~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVW 285 (882)
...|+ ...+++.+++.+.+ +|+.|..-+|||+.+++++..|.+|..+|.+|+|||+|..|||+|.|++ +|||
T Consensus 298 ~QEGHs~~v~~iaf~~DGSL~~----tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt-~kVW 372 (459)
T KOG0272|consen 298 LQEGHSKGVFSIAFQPDGSLAA----TGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNT-CKVW 372 (459)
T ss_pred hhcccccccceeEecCCCceee----ccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCc-EEEe
Confidence 11121 12234455555433 6788999999999999999999999999999999999999999999775 9999
Q ss_pred ecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEcc-CCCEEEEEeCCCeEEEEECCCCCCccccccccCCC
Q 002778 286 RIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH-YSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQG 364 (882)
Q Consensus 286 di~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSP-Dg~~LAsgS~DGTVhIWdI~~~gg~~~l~~H~~~~ 364 (882)
|+... ..+|.+. +|+ ..|..|.|+| .|++|+++|.|+|++||.-........+.+|...+
T Consensus 373 DLR~r-----------------~~ly~ip-AH~-nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV 433 (459)
T KOG0272|consen 373 DLRMR-----------------SELYTIP-AHS-NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKV 433 (459)
T ss_pred eeccc-----------------ccceecc-ccc-chhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccce
Confidence 99641 3567764 444 4799999999 78999999999999999998888888999998766
Q ss_pred CCCcccCC
Q 002778 365 GDPYLFPV 372 (882)
Q Consensus 365 ~~~~~sp~ 372 (882)
.+...++.
T Consensus 434 ~s~Dis~d 441 (459)
T KOG0272|consen 434 ISLDISPD 441 (459)
T ss_pred EEEEeccC
Confidence 55444443
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.7e-19 Score=185.12 Aligned_cols=261 Identities=18% Similarity=0.199 Sum_probs=172.6
Q ss_pred cCCeEEEEECCCCeEEEEEEcC-CcEEEEEEcC--CEEEEEECCeEEEEECCCCc--eeEEEecCCCcccCCCCcccccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGLATQIYCFDALTLE--NKFSVLTYPVPQLAGQGAVGINV 133 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLkf~-s~V~sV~~S~--rlLAV~~d~qI~IWDa~T~e--~l~tL~t~p~p~~~~~~~~g~~~ 133 (882)
.+.|||||-+.||.+.++++|+ +.|..+.+.+ +.||++....|++||+++.. .+.++.+|...
T Consensus 18 YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kN------------ 85 (311)
T KOG0315|consen 18 YDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKN------------ 85 (311)
T ss_pred CcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCc------------
Confidence 6899999999999999999986 6798888876 68888888899999999876 46677666441
Q ss_pred cceeeEE--cCcEEEEeCC--CeEeccCCCCCCccCCCCCCCCCc----CCCCCccEEEeeccchhhhhccccccccccc
Q 002778 134 GYGPMAV--GPRWLAYASN--TLLLSNSGRLSPQNLTPSGVSPST----SPGGSSLVARYAMEHSKQFAAGLSKTLSKYC 205 (882)
Q Consensus 134 ~~g~lAl--spR~LAyss~--~v~lwdtG~vs~q~lt~~~vs~s~----SP~~GslVA~~A~essk~la~GliktLs~~~ 205 (882)
...+.| ..||+..++. +++||+.-.+..|.+-.. .++.+ .|.-+.|+. .|.+ -...++.-....|
T Consensus 86 -VtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~-~spVn~vvlhpnQteLis---~dqs--g~irvWDl~~~~c 158 (311)
T KOG0315|consen 86 -VTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQH-NSPVNTVVLHPNQTELIS---GDQS--GNIRVWDLGENSC 158 (311)
T ss_pred -eEEEEEeecCeEEEecCCCceEEEEeccCcccchhccC-CCCcceEEecCCcceEEe---ecCC--CcEEEEEccCCcc
Confidence 123333 3499987754 699999633333322110 01110 111111110 0100 0001111111222
Q ss_pred c-ccCCCCCCC--CccCCCccccccccccccCCCceEEEEECCCC------cEEEEeccCCCCeEEEEECCCCCEEEEEE
Q 002778 206 Q-ELLPDGSSS--PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR------AIISQFKAHTSPISALCFDPSGTLLVTAS 276 (882)
Q Consensus 206 ~-~l~pdgs~s--~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~------~~v~~f~aH~spIsaLaFSPdGtlLATAS 276 (882)
. ++.|+.... .+...+++..++ .+...|.+.+|++-+. ..+.+|++|+..|....||||+++|||+|
T Consensus 159 ~~~liPe~~~~i~sl~v~~dgsml~----a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~s 234 (311)
T KOG0315|consen 159 THELIPEDDTSIQSLTVMPDGSMLA----AANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCS 234 (311)
T ss_pred ccccCCCCCcceeeEEEcCCCcEEE----EecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeec
Confidence 2 244544321 223344455433 3467899999999764 46778999999999999999999999999
Q ss_pred cCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccc
Q 002778 277 VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSG 356 (882)
Q Consensus 277 ~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~ 356 (882)
.|. +++||++... -.+-....|+. ..+++.+||.||+||++++.|+++|||++...+....
T Consensus 235 sdk-tv~iwn~~~~-----------------~kle~~l~gh~-rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~q 295 (311)
T KOG0315|consen 235 SDK-TVKIWNTDDF-----------------FKLELVLTGHQ-RWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQ 295 (311)
T ss_pred CCc-eEEEEecCCc-----------------eeeEEEeecCC-ceEEeeeeccCccEEEecCCCCceeecccccCceeee
Confidence 954 5999999531 01111123433 4799999999999999999999999999998777666
Q ss_pred ccccc
Q 002778 357 FQTLS 361 (882)
Q Consensus 357 l~~H~ 361 (882)
..+|-
T Consensus 296 y~gh~ 300 (311)
T KOG0315|consen 296 YQGHH 300 (311)
T ss_pred cCCcc
Confidence 77774
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.7e-20 Score=199.00 Aligned_cols=247 Identities=16% Similarity=0.196 Sum_probs=174.7
Q ss_pred cCCeEEEEECCCCeEEE-EEE-cCCcEEEEEEcC-------CEEEEEE-CCeEEEEECCCCceeEEEecCCCcccCCCCc
Q 002778 59 SPTAVRFYSFQSHCYEH-VLR-FRSSVCMVRCSP-------RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGA 128 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~-tLk-f~s~V~sV~~S~-------rlLAV~~-d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~ 128 (882)
.+++|++||.++|+++. .|. |.-.|.++++-| ++||.+. |+.|+|||+.-+++++++.+|..+
T Consensus 177 ~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~------- 249 (480)
T KOG0271|consen 177 KDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTAS------- 249 (480)
T ss_pred cCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccc-------
Confidence 46999999999998765 455 888999999965 6777765 788999999999999999998874
Q ss_pred ccccccceeeEEcCcEEEEeC---CCeEeccC--CCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhcccc-----
Q 002778 129 VGINVGYGPMAVGPRWLAYAS---NTLLLSNS--GRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLS----- 198 (882)
Q Consensus 129 ~g~~~~~g~lAlspR~LAyss---~~v~lwdt--G~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~Gli----- 198 (882)
...+.+|..-|.|++ .++++|.. |.+ ...|++. +..|.+++...-..|-.|..
T Consensus 250 ------VTCvrwGG~gliySgS~DrtIkvw~a~dG~~-~r~lkGH----------ahwvN~lalsTdy~LRtgaf~~t~~ 312 (480)
T KOG0271|consen 250 ------VTCVRWGGEGLIYSGSQDRTIKVWRALDGKL-CRELKGH----------AHWVNHLALSTDYVLRTGAFDHTGR 312 (480)
T ss_pred ------eEEEEEcCCceEEecCCCceEEEEEccchhH-HHhhccc----------chheeeeeccchhhhhccccccccc
Confidence 346666654444554 37999974 322 2333321 11222222211111111111
Q ss_pred ----------ccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECC-CCcEEEEeccCCCCeEEEEECC
Q 002778 199 ----------KTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV-TRAIISQFKAHTSPISALCFDP 267 (882)
Q Consensus 199 ----------ktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~-s~~~v~~f~aH~spIsaLaFSP 267 (882)
+.+.+|-.- .. ... .. +. +++.|+++.+|+-. +.+++..+.+|..-|+.+.|||
T Consensus 313 ~~~~~se~~~~Al~rY~~~-~~---------~~~-er--lV--SgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP 377 (480)
T KOG0271|consen 313 KPKSFSEEQKKALERYEAV-LK---------DSG-ER--LV--SGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP 377 (480)
T ss_pred cCCChHHHHHHHHHHHHHh-hc---------cCc-ce--eE--EecCCceEEEecccccccchhhhhchhhheeeEEECC
Confidence 122222211 11 111 11 11 57889999999964 5568889999999999999999
Q ss_pred CCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEE
Q 002778 268 SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV 347 (882)
Q Consensus 268 dGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWd 347 (882)
||+++|+||.|. .|++||-.+ | +.+..| |||- +.|+.|+||.|++.|+++|.|.|++||+
T Consensus 378 d~r~IASaSFDk-SVkLW~g~t-------G----------k~lasf-RGHv-~~VYqvawsaDsRLlVS~SkDsTLKvw~ 437 (480)
T KOG0271|consen 378 DGRYIASASFDK-SVKLWDGRT-------G----------KFLASF-RGHV-AAVYQVAWSADSRLLVSGSKDSTLKVWD 437 (480)
T ss_pred CccEEEEeeccc-ceeeeeCCC-------c----------chhhhh-hhcc-ceeEEEEeccCccEEEEcCCCceEEEEE
Confidence 999999999954 599999865 4 456666 6865 5799999999999999999999999999
Q ss_pred CCCCCCccccccccCCC
Q 002778 348 LSPFGGDSGFQTLSSQG 364 (882)
Q Consensus 348 I~~~gg~~~l~~H~~~~ 364 (882)
+.+.+-...+-+|.-.|
T Consensus 438 V~tkKl~~DLpGh~DEV 454 (480)
T KOG0271|consen 438 VRTKKLKQDLPGHADEV 454 (480)
T ss_pred eeeeeecccCCCCCceE
Confidence 99988888888886544
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-17 Score=190.90 Aligned_cols=191 Identities=22% Similarity=0.309 Sum_probs=149.9
Q ss_pred cCCeEEEEECCCCe--EEEEEE-cCCcEEEEEEcC--CEEEEEE-CCeEEEEEC-CCCceeEEEecCCCcccCCCCcccc
Q 002778 59 SPTAVRFYSFQSHC--YEHVLR-FRSSVCMVRCSP--RIVAVGL-ATQIYCFDA-LTLENKFSVLTYPVPQLAGQGAVGI 131 (882)
Q Consensus 59 sp~tVrlWDlkTG~--~V~tLk-f~s~V~sV~~S~--rlLAV~~-d~qI~IWDa-~T~e~l~tL~t~p~p~~~~~~~~g~ 131 (882)
.++++++|++.+++ ..+++. |...|++++|++ ++|+.+. |.+|+|||+ ..+.+++++.+|+..
T Consensus 179 ~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~---------- 248 (456)
T KOG0266|consen 179 SDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTY---------- 248 (456)
T ss_pred CCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCc----------
Confidence 67999999998888 677764 888999999987 5666654 678999999 566889999988763
Q ss_pred cccceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCC
Q 002778 132 NVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPD 211 (882)
Q Consensus 132 ~~~~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pd 211 (882)
... ++|.+. + .+++
T Consensus 249 ---v~~-------~~f~p~---------------------------g-~~i~---------------------------- 262 (456)
T KOG0266|consen 249 ---VTS-------VAFSPD---------------------------G-NLLV---------------------------- 262 (456)
T ss_pred ---eEE-------EEecCC---------------------------C-CEEE----------------------------
Confidence 122 333221 1 1110
Q ss_pred CCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCc
Q 002778 212 GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSC 291 (882)
Q Consensus 212 gs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~ 291 (882)
+|+.|++|+|||+.+++++..|.+|.++|++++|+++|++|++++.|| .|+|||+..
T Consensus 263 --------------------Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~-~i~vwd~~~-- 319 (456)
T KOG0266|consen 263 --------------------SGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDG-TIRVWDLET-- 319 (456)
T ss_pred --------------------EecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCc-cEEEEECCC--
Confidence 356799999999999999999999999999999999999999999866 599999964
Q ss_pred ccCCCCCCccccCCcccEEEEEEecccCC-cEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccccccccC
Q 002778 292 MRSGSGNHKYDWNSSHVHLYKLHRGITSA-TIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSS 362 (882)
Q Consensus 292 ~~~~sG~~~~d~sss~~~l~~L~RG~t~a-~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~H~~ 362 (882)
+. ..++..+. +.... .++++.|||++++|++++.|+++++|++..........+|..
T Consensus 320 -----~~--------~~~~~~~~-~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~ 377 (456)
T KOG0266|consen 320 -----GS--------KLCLKLLS-GAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSN 377 (456)
T ss_pred -----Cc--------eeeeeccc-CCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCC
Confidence 20 00233443 44444 799999999999999999999999999998887778888863
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.8e-18 Score=188.47 Aligned_cols=214 Identities=18% Similarity=0.136 Sum_probs=161.6
Q ss_pred CCcEEEEEEcC--CEEEEE-ECCeEEEEECCCCceeEEEecCCCcccCCCCcccccccceeeEEcC----cEEEEeC--C
Q 002778 80 RSSVCMVRCSP--RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP----RWLAYAS--N 150 (882)
Q Consensus 80 ~s~V~sV~~S~--rlLAV~-~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g~lAlsp----R~LAyss--~ 150 (882)
..+|..+.|+. +.||++ .++.++||.+.+...+.+|.+|... .+.+.|.| .-||.++ .
T Consensus 175 ~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~-------------v~~~~fhP~~~~~~lat~s~Dg 241 (459)
T KOG0272|consen 175 TRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSR-------------VGAAVFHPVDSDLNLATASADG 241 (459)
T ss_pred CCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccc-------------eeeEEEccCCCccceeeeccCC
Confidence 34677788875 677765 6899999999999999999998762 34556666 2566553 4
Q ss_pred CeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCCCCccCCCccccccccc
Q 002778 151 TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAG 230 (882)
Q Consensus 151 ~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~ 230 (882)
++++|.... .. .++.|.+|..+ .+...+.|+++.++
T Consensus 242 tvklw~~~~-------------------e~----------------~l~~l~gH~~R------Vs~VafHPsG~~L~--- 277 (459)
T KOG0272|consen 242 TVKLWKLSQ-------------------ET----------------PLQDLEGHLAR------VSRVAFHPSGKFLG--- 277 (459)
T ss_pred ceeeeccCC-------------------Cc----------------chhhhhcchhh------heeeeecCCCceee---
Confidence 788887411 00 11223333322 12334556677765
Q ss_pred cccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEE
Q 002778 231 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 310 (882)
Q Consensus 231 ~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l 310 (882)
+++.|-+-++||+.++..+....+|..+|.+++|.|||.+++|++.|- .-||||+.+ | +++
T Consensus 278 -TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~-~~RvWDlRt-------g----------r~i 338 (459)
T KOG0272|consen 278 -TASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDS-LGRVWDLRT-------G----------RCI 338 (459)
T ss_pred -ecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccc-hhheeeccc-------C----------cEE
Confidence 678999999999999999999999999999999999999999999954 589999975 4 466
Q ss_pred EEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccccccccCCCCCCcccC
Q 002778 311 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFP 371 (882)
Q Consensus 311 ~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~H~~~~~~~~~sp 371 (882)
..| .||. ..|.+|+|||+|..||+||.|+|++||||........+-+|..-|....+.|
T Consensus 339 m~L-~gH~-k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p 397 (459)
T KOG0272|consen 339 MFL-AGHI-KEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSP 397 (459)
T ss_pred EEe-cccc-cceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecc
Confidence 555 4654 5799999999999999999999999999998888888888876555554444
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.3e-17 Score=172.90 Aligned_cols=219 Identities=16% Similarity=0.205 Sum_probs=160.8
Q ss_pred cCCeEEEEEC-----CCCeEEEEEE-cCCcEEEEEEcC---CEEEEEECCeEEEEECCCCceeEEEecCCCcccCCCCcc
Q 002778 59 SPTAVRFYSF-----QSHCYEHVLR-FRSSVCMVRCSP---RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAV 129 (882)
Q Consensus 59 sp~tVrlWDl-----kTG~~V~tLk-f~s~V~sV~~S~---rlLAV~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~ 129 (882)
.++++.+|++ +.|..++.|+ |...|..|.+++ ..|.++.|+.+++||+.+++..+.+.+|..-
T Consensus 36 rDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~d-------- 107 (315)
T KOG0279|consen 36 RDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKD-------- 107 (315)
T ss_pred cceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCc--------
Confidence 5689999987 4577788887 677799999876 3556677899999999999999999888761
Q ss_pred cccccceeeEEcC--cEEEEeC--CCeEeccC-CCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhcccccccccc
Q 002778 130 GINVGYGPMAVGP--RWLAYAS--NTLLLSNS-GRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKY 204 (882)
Q Consensus 130 g~~~~~g~lAlsp--R~LAyss--~~v~lwdt-G~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~ 204 (882)
.-.+||++ |-|..++ +++++|++ |... +..+.+....-.
T Consensus 108 -----Vlsva~s~dn~qivSGSrDkTiklwnt~g~ck---------------------~t~~~~~~~~WV---------- 151 (315)
T KOG0279|consen 108 -----VLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCK---------------------YTIHEDSHREWV---------- 151 (315)
T ss_pred -----eEEEEecCCCceeecCCCcceeeeeeecccEE---------------------EEEecCCCcCcE----------
Confidence 23567777 6665543 57889985 2211 111111000000
Q ss_pred ccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEE
Q 002778 205 CQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINI 284 (882)
Q Consensus 205 ~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrV 284 (882)
+-+.|+|+.....+. +++.|++|+|||+.+-+....|.+|++.+++++|||||.++|+|+.+|. +.+
T Consensus 152 --------scvrfsP~~~~p~Iv----s~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~-~~L 218 (315)
T KOG0279|consen 152 --------SCVRFSPNESNPIIV----SASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGE-AML 218 (315)
T ss_pred --------EEEEEcCCCCCcEEE----EccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCce-EEE
Confidence 012234443333332 5688999999999999999999999999999999999999999999775 899
Q ss_pred EecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCcc
Q 002778 285 FRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS 355 (882)
Q Consensus 285 Wdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~ 355 (882)
||+.. + +++|.|. ....|.+++|||.--||+.+...+ |+|||+++.....
T Consensus 219 wdL~~-------~----------k~lysl~---a~~~v~sl~fspnrywL~~at~~s-IkIwdl~~~~~v~ 268 (315)
T KOG0279|consen 219 WDLNE-------G----------KNLYSLE---AFDIVNSLCFSPNRYWLCAATATS-IKIWDLESKAVVE 268 (315)
T ss_pred EEccC-------C----------ceeEecc---CCCeEeeEEecCCceeEeeccCCc-eEEEeccchhhhh
Confidence 99964 3 5788874 235799999999999999887554 9999999865443
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.2e-18 Score=182.64 Aligned_cols=225 Identities=17% Similarity=0.205 Sum_probs=167.1
Q ss_pred cCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC--CEEEEEECC-eEEEEECCC-CceeEEEecCCCcccCCCCcccccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVGLAT-QIYCFDALT-LENKFSVLTYPVPQLAGQGAVGINV 133 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~--rlLAV~~d~-qI~IWDa~T-~e~l~tL~t~p~p~~~~~~~~g~~~ 133 (882)
.+.+|++||..||++...|+ |.+.|.+|+|+. ++||.+..+ +|++||..+ .++++++.+|..
T Consensus 128 ~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h------------- 194 (406)
T KOG0295|consen 128 EDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEH------------- 194 (406)
T ss_pred CCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCccc-------------
Confidence 36899999999999999998 888899999974 788877654 599999876 567777666543
Q ss_pred cceeeEEcC--cEEEEeC--CCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccC
Q 002778 134 GYGPMAVGP--RWLAYAS--NTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELL 209 (882)
Q Consensus 134 ~~g~lAlsp--R~LAyss--~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~ 209 (882)
....+++-| .+|+.++ ++++.|+... |. .++++.++...
T Consensus 195 ~vS~V~f~P~gd~ilS~srD~tik~We~~t-------------------g~----------------cv~t~~~h~ew-- 237 (406)
T KOG0295|consen 195 GVSSVFFLPLGDHILSCSRDNTIKAWECDT-------------------GY----------------CVKTFPGHSEW-- 237 (406)
T ss_pred ceeeEEEEecCCeeeecccccceeEEeccc-------------------ce----------------eEEeccCchHh--
Confidence 123445544 6666554 4677886310 00 00112111110
Q ss_pred CCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCC---------------CCEEEE
Q 002778 210 PDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPS---------------GTLLVT 274 (882)
Q Consensus 210 pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPd---------------GtlLAT 274 (882)
.-.+.++.++..++ +++.|.+|++|-+.++++...|+.|..+|-+++|-|. |..|++
T Consensus 238 ----vr~v~v~~DGti~A----s~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s 309 (406)
T KOG0295|consen 238 ----VRMVRVNQDGTIIA----SCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGS 309 (406)
T ss_pred ----EEEEEecCCeeEEE----ecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEe
Confidence 00112233334333 5688999999999999999999999999999999762 359999
Q ss_pred EEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCc
Q 002778 275 ASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD 354 (882)
Q Consensus 275 AS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~ 354 (882)
+|.|++ |++||+.+ | .+|.+|. |+. ..|.+++|+|-|+||+++.+|+|+||||++...+.
T Consensus 310 ~SrDkt-Ik~wdv~t-------g----------~cL~tL~-ghd-nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cm 369 (406)
T KOG0295|consen 310 GSRDKT-IKIWDVST-------G----------MCLFTLV-GHD-NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCM 369 (406)
T ss_pred ecccce-EEEEeccC-------C----------eEEEEEe-ccc-ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceee
Confidence 999765 99999965 4 6888884 665 47999999999999999999999999999999999
Q ss_pred ccccccc
Q 002778 355 SGFQTLS 361 (882)
Q Consensus 355 ~~l~~H~ 361 (882)
.++..|.
T Consensus 370 k~~~ah~ 376 (406)
T KOG0295|consen 370 KTLEAHE 376 (406)
T ss_pred eccCCCc
Confidence 8888886
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.2e-16 Score=167.58 Aligned_cols=238 Identities=16% Similarity=0.104 Sum_probs=162.5
Q ss_pred cCCeEEEEECCCCeEEEEEEcC-CcEEEEEEcC--CEEEE-EECCeEEEEECCCCc------eeEEEecCCCcccCCCCc
Q 002778 59 SPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAV-GLATQIYCFDALTLE------NKFSVLTYPVPQLAGQGA 128 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLkf~-s~V~sV~~S~--rlLAV-~~d~qI~IWDa~T~e------~l~tL~t~p~p~~~~~~~ 128 (882)
-++++.|||.-|...++-+..+ .+|..++|+| ..||. |+++..-||++.+.+ ..+.|.+|..
T Consensus 75 qDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtg-------- 146 (343)
T KOG0286|consen 75 QDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTG-------- 146 (343)
T ss_pred cCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccc--------
Confidence 4689999999999999999976 4799999987 67887 468999999998662 2233444432
Q ss_pred ccccccce-eeEEcC--cEEEEeCC-CeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhcccccccccc
Q 002778 129 VGINVGYG-PMAVGP--RWLAYASN-TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKY 204 (882)
Q Consensus 129 ~g~~~~~g-~lAlsp--R~LAyss~-~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~ 204 (882)
|- .+-|-+ ..|--+++ +..+||. |.++++ ..|.+|
T Consensus 147 ------ylScC~f~dD~~ilT~SGD~TCalWDi------------------------------e~g~~~-----~~f~GH 185 (343)
T KOG0286|consen 147 ------YLSCCRFLDDNHILTGSGDMTCALWDI------------------------------ETGQQT-----QVFHGH 185 (343)
T ss_pred ------eeEEEEEcCCCceEecCCCceEEEEEc------------------------------ccceEE-----EEecCC
Confidence 11 121111 11211222 3455653 111111 122222
Q ss_pred ccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEE
Q 002778 205 CQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINI 284 (882)
Q Consensus 205 ~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrV 284 (882)
.-+++ ...++++ +.+.. .+|+-|+..+|||+.++.++++|.+|.+.|++++|.|+|.-+||+|.|++ +|+
T Consensus 186 ~gDV~----slsl~p~-~~ntF----vSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~t-cRl 255 (343)
T KOG0286|consen 186 TGDVM----SLSLSPS-DGNTF----VSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDAT-CRL 255 (343)
T ss_pred cccEE----EEecCCC-CCCeE----EecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCce-eEE
Confidence 21111 0112221 22221 16788999999999999999999999999999999999999999999876 899
Q ss_pred EecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccccccccCCC
Q 002778 285 FRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQG 364 (882)
Q Consensus 285 Wdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~H~~~~ 364 (882)
||+... +.+..+..-.....|++|+||.-|++|.+|-.|.+++|||.-.....-.+.+|..-+
T Consensus 256 yDlRaD-----------------~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRv 318 (343)
T KOG0286|consen 256 YDLRAD-----------------QELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRV 318 (343)
T ss_pred EeecCC-----------------cEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCee
Confidence 999742 233333322234579999999999999999999999999987665555789998767
Q ss_pred CCCcccCC
Q 002778 365 GDPYLFPV 372 (882)
Q Consensus 365 ~~~~~sp~ 372 (882)
.+..++|.
T Consensus 319 Scl~~s~D 326 (343)
T KOG0286|consen 319 SCLGVSPD 326 (343)
T ss_pred EEEEECCC
Confidence 66666653
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-15 Score=152.26 Aligned_cols=211 Identities=20% Similarity=0.264 Sum_probs=151.9
Q ss_pred cCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC--CEEEEEE-CCeEEEEECCCCceeEEEecCCCcccCCCCccccccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 134 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~--rlLAV~~-d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~ 134 (882)
.++.|++||+.+++.+..+. +...|.++.+++ ++++++. ++.|++||+.+++....+..+..+
T Consensus 71 ~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~------------- 137 (289)
T cd00200 71 SDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDW------------- 137 (289)
T ss_pred CCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCc-------------
Confidence 47899999999988888887 667899999987 6777777 889999999988888777654431
Q ss_pred ceeeEEcC--cEEEEeC--CCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCC
Q 002778 135 YGPMAVGP--RWLAYAS--NTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLP 210 (882)
Q Consensus 135 ~g~lAlsp--R~LAyss--~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~p 210 (882)
...+++.| ++|+... ..+.+|+.... ..+..+.. +
T Consensus 138 i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-------------------~~~~~~~~----------------~------ 176 (289)
T cd00200 138 VNSVAFSPDGTFVASSSQDGTIKLWDLRTG-------------------KCVATLTG----------------H------ 176 (289)
T ss_pred EEEEEEcCcCCEEEEEcCCCcEEEEEcccc-------------------ccceeEec----------------C------
Confidence 34567776 6676654 46778874210 00000000 0
Q ss_pred CCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCC
Q 002778 211 DGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPS 290 (882)
Q Consensus 211 dgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~ 290 (882)
.+....+..+++++.+. .+..+|.|++||+.+++.+..+..|..+|.+++|+|++.++++++.+|. |++|++..
T Consensus 177 ~~~i~~~~~~~~~~~l~----~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-i~i~~~~~- 250 (289)
T cd00200 177 TGEVNSVAFSPDGEKLL----SSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT-IRVWDLRT- 250 (289)
T ss_pred ccccceEEECCCcCEEE----EecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCc-EEEEEcCC-
Confidence 00011112223333332 2345899999999999999999899999999999999999999986675 89999953
Q ss_pred cccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEE
Q 002778 291 CMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV 347 (882)
Q Consensus 291 ~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWd 347 (882)
+ ..+..+. ++ ...|.+++|++++++|++++.||+++||+
T Consensus 251 ------~----------~~~~~~~-~~-~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 251 ------G----------ECVQTLS-GH-TNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred ------c----------eeEEEcc-cc-CCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 2 2444443 33 35799999999999999999999999996
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.8e-17 Score=190.05 Aligned_cols=113 Identities=12% Similarity=0.202 Sum_probs=98.0
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEE
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~ 311 (882)
+++.|++-++|.....+.++.|.+|-+.|.|++|+|+..++||+|.| +++|+||+.+ | ..+.
T Consensus 510 tas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD-~tVRlWDv~~-------G----------~~VR 571 (707)
T KOG0263|consen 510 TASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSD-RTVRLWDVST-------G----------NSVR 571 (707)
T ss_pred ecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCC-ceEEEEEcCC-------C----------cEEE
Confidence 45678999999999999999999999999999999999999999985 5699999976 4 2344
Q ss_pred EEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccccccccCCC
Q 002778 312 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQG 364 (882)
Q Consensus 312 ~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~H~~~~ 364 (882)
.| +||+ ++|.+|+|||+|+|||+|+.||.|+|||+....-...+++|+..+
T Consensus 572 iF-~GH~-~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti 622 (707)
T KOG0263|consen 572 IF-TGHK-GPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTI 622 (707)
T ss_pred Ee-cCCC-CceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCce
Confidence 44 6865 689999999999999999999999999998877777889996543
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.3e-16 Score=173.01 Aligned_cols=318 Identities=16% Similarity=0.154 Sum_probs=184.5
Q ss_pred cccccCceEEEEecCCCCC----CCCCc----ccccccccccCccCCCCCcc---cccCCeEEEEECCCCeEEEEEE---
Q 002778 13 GFRKLHPFLLVVAGEDTNT----LAPGQ----NRSHLGGVRDGMMDSQSGNC---VNSPTAVRFYSFQSHCYEHVLR--- 78 (882)
Q Consensus 13 ~f~~~~pll~vv~~d~~~~----~~~~~----~~~~~~~v~~~~~~~~~~~~---~~sp~tVrlWDlkTG~~V~tLk--- 78 (882)
.|+-+||+=++-++|+... |-|-. ...|.-=|+.....+. |+- +.++++|.+||=++|+.+..|.
T Consensus 154 ~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPD-G~~Fat~gsDgki~iyDGktge~vg~l~~~~ 232 (603)
T KOG0318|consen 154 DFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPD-GSRFATAGSDGKIYIYDGKTGEKVGELEDSD 232 (603)
T ss_pred eccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCC-CCeEEEecCCccEEEEcCCCccEEEEecCCC
Confidence 4999999988888887643 11100 0011122332222222 332 2478999999999999999997
Q ss_pred -cCCcEEEEEEcC---CEEEEEECCeEEEEECCCCceeEEEecCCC---------ccc---------------------C
Q 002778 79 -FRSSVCMVRCSP---RIVAVGLATQIYCFDALTLENKFSVLTYPV---------PQL---------------------A 124 (882)
Q Consensus 79 -f~s~V~sV~~S~---rlLAV~~d~qI~IWDa~T~e~l~tL~t~p~---------p~~---------------------~ 124 (882)
|.+.|++|+++| ++|.++.|.+++|||+.+.+++.++.-... ++. .
T Consensus 233 aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~ 312 (603)
T KOG0318|consen 233 AHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSV 312 (603)
T ss_pred CccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCCh
Confidence 889999999997 567777889999999999888777642111 000 0
Q ss_pred CCCcccccccceeeEEcC--cEEEEeC--CCeEeccCCCCCCccCCC-----CCCCCCcCCCCCccEEE-----------
Q 002778 125 GQGAVGINVGYGPMAVGP--RWLAYAS--NTLLLSNSGRLSPQNLTP-----SGVSPSTSPGGSSLVAR----------- 184 (882)
Q Consensus 125 ~~~~~g~~~~~g~lAlsp--R~LAyss--~~v~lwdtG~vs~q~lt~-----~~vs~s~SP~~GslVA~----------- 184 (882)
.+-..|.+....+++++| .+|-.++ ..+.-|+.|......+.+ .......+ .++.++-.
T Consensus 313 ~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~-~~~~~~t~g~Dd~l~~~~~ 391 (603)
T KOG0318|consen 313 LKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAAS-ESGELFTIGWDDTLRVISL 391 (603)
T ss_pred hheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeec-CCCcEEEEecCCeEEEEec
Confidence 000123344445556655 4443332 245567654222111111 00000000 00111100
Q ss_pred ----eeccchhhhhcc-----------c-----c------ccccccccccCCCC-CCCCccCCCccccccccccccCCCc
Q 002778 185 ----YAMEHSKQFAAG-----------L-----S------KTLSKYCQELLPDG-SSSPVSPNSVWKVGRHAGADMDNAG 237 (882)
Q Consensus 185 ----~A~essk~la~G-----------l-----i------ktLs~~~~~l~pdg-s~s~~S~ss~~k~~~la~~tgs~dG 237 (882)
|..+....+..+ + + +.+++ +.. .+-+ .......+++....+ .|++||
T Consensus 392 ~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~-~~~-~~~~y~~s~vAv~~~~~~va----VGG~Dg 465 (603)
T KOG0318|consen 392 KDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTK-VSS-IPIGYESSAVAVSPDGSEVA----VGGQDG 465 (603)
T ss_pred ccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCc-cee-eccccccceEEEcCCCCEEE----Eecccc
Confidence 000000000000 0 0 00000 000 0000 011112223333322 468999
Q ss_pred eEEEEECCCCc--EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEe
Q 002778 238 IVVVKDFVTRA--IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 315 (882)
Q Consensus 238 ~V~VWDl~s~~--~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~R 315 (882)
.|+||.+.... ....+..|..+|++++|||||++||.++..+. +-+||+... ....-+.
T Consensus 466 kvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rk-vv~yd~~s~------------------~~~~~~w 526 (603)
T KOG0318|consen 466 KVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRK-VVLYDVASR------------------EVKTNRW 526 (603)
T ss_pred eEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCc-EEEEEcccC------------------ceeccee
Confidence 99999998654 33566789999999999999999999998665 779999642 2233335
Q ss_pred cccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCcccc
Q 002778 316 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGF 357 (882)
Q Consensus 316 G~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l 357 (882)
+++.++|.+|+||||.+.||+||.|.+|+||.++.......+
T Consensus 527 ~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~i 568 (603)
T KOG0318|consen 527 AFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIII 568 (603)
T ss_pred eeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEe
Confidence 667789999999999999999999999999999876655444
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.8e-16 Score=178.60 Aligned_cols=188 Identities=18% Similarity=0.204 Sum_probs=146.3
Q ss_pred ccCCeEEEEEC-CCCeEEEEEE-cCCcEEEEEEcC--CEEEEE-ECCeEEEEECCCCceeEEEecCCCcccCCCCccccc
Q 002778 58 NSPTAVRFYSF-QSHCYEHVLR-FRSSVCMVRCSP--RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGIN 132 (882)
Q Consensus 58 ~sp~tVrlWDl-kTG~~V~tLk-f~s~V~sV~~S~--rlLAV~-~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~ 132 (882)
..+.+||+||+ ..+..+++++ |...|++++|++ ++|++| .|+.|+|||+++++++..|.+|..+
T Consensus 222 s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~----------- 290 (456)
T KOG0266|consen 222 SDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDG----------- 290 (456)
T ss_pred cCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCc-----------
Confidence 46799999999 5569999998 999999999997 566665 5788999999999999999887652
Q ss_pred ccceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCC
Q 002778 133 VGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG 212 (882)
Q Consensus 133 ~~~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdg 212 (882)
... +++..+. .+
T Consensus 291 --is~-------~~f~~d~----------------------------~~------------------------------- 302 (456)
T KOG0266|consen 291 --ISG-------LAFSPDG----------------------------NL------------------------------- 302 (456)
T ss_pred --eEE-------EEECCCC----------------------------CE-------------------------------
Confidence 122 3332211 10
Q ss_pred CCCCccCCCccccccccccccCCCceEEEEECCCCc--EEEEeccCCCC--eEEEEECCCCCEEEEEEcCCCEEEEEecC
Q 002778 213 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA--IISQFKAHTSP--ISALCFDPSGTLLVTASVYGNNINIFRIM 288 (882)
Q Consensus 213 s~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~--~v~~f~aH~sp--IsaLaFSPdGtlLATAS~dGt~IrVWdi~ 288 (882)
+. +++.||+|+|||+.++. ++..+..+..+ ++.++|+|+|.+|+++..|+ .+++||+.
T Consensus 303 -------------l~----s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~-~~~~w~l~ 364 (456)
T KOG0266|consen 303 -------------LV----SASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDR-TLKLWDLR 364 (456)
T ss_pred -------------EE----EcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCC-eEEEEEcc
Confidence 00 23568999999999998 67888887666 99999999999999999865 59999996
Q ss_pred CCcccCCCCCCccccCCcccEEEEEEecccCC--cEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccccccc
Q 002778 289 PSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA--TIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTL 360 (882)
Q Consensus 289 p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a--~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~H 360 (882)
. + ..+ ...+++... .+.+..++++++++.+++.|++|++|++.+......+.+|
T Consensus 365 ~-------~----------~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h 420 (456)
T KOG0266|consen 365 S-------G----------KSV-GTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGH 420 (456)
T ss_pred C-------C----------cce-eeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCC
Confidence 3 1 112 222455443 5667778999999999999999999999998777788888
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3e-16 Score=181.46 Aligned_cols=187 Identities=21% Similarity=0.320 Sum_probs=139.9
Q ss_pred cCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC--C-EEEEEECCeEEEEECCCCceeEEEecCCCcccCCCCccccccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--R-IVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 134 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~--r-lLAV~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~ 134 (882)
.+++|||||..+|-|+.|+. |.+.|.+|.|.. + +|..++|++|+.||+....+-+|+.. |.|. .
T Consensus 370 eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~-P~p~-----------Q 437 (893)
T KOG0291|consen 370 EDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTS-PEPI-----------Q 437 (893)
T ss_pred CCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecC-CCce-----------e
Confidence 67999999999999999997 999999999975 3 44557899999999998888777743 3331 1
Q ss_pred ceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCC
Q 002778 135 YGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS 214 (882)
Q Consensus 135 ~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~ 214 (882)
+..+|+.| + |.+|.. |
T Consensus 438 fscvavD~----------------------------------s-GelV~A---------------------------G-- 453 (893)
T KOG0291|consen 438 FSCVAVDP----------------------------------S-GELVCA---------------------------G-- 453 (893)
T ss_pred eeEEEEcC----------------------------------C-CCEEEe---------------------------e--
Confidence 22333221 0 111100 0
Q ss_pred CCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccC
Q 002778 215 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS 294 (882)
Q Consensus 215 s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~ 294 (882)
+-..=.|.||++.+|+.+-.+.+|.+||.+|+|+|+|++|||+|.|. +||+||+-..
T Consensus 454 ------------------~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDk-TVRiW~if~s---- 510 (893)
T KOG0291|consen 454 ------------------AQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDK-TVRIWDIFSS---- 510 (893)
T ss_pred ------------------ccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccc-eEEEEEeecc----
Confidence 01113599999999999999999999999999999999999999965 5999999431
Q ss_pred CCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCcccccc
Q 002778 295 GSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 359 (882)
Q Consensus 295 ~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~ 359 (882)
.| .+-++.- ...+.+++|+|||+-||+++.||.|.+||+......-++.+
T Consensus 511 -~~-----------~vEtl~i---~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Idg 560 (893)
T KOG0291|consen 511 -SG-----------TVETLEI---RSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDG 560 (893)
T ss_pred -Cc-----------eeeeEee---ccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccc
Confidence 11 2233321 24689999999999999999999999999987655444443
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.3e-16 Score=166.70 Aligned_cols=262 Identities=16% Similarity=0.153 Sum_probs=181.8
Q ss_pred ccccccccCccCCCCCcccc---cCCeEEEEEC-CCCeEEEEEE-cCCcEEEEEEcC---CEEEEEECCeEEEEECCCCc
Q 002778 39 SHLGGVRDGMMDSQSGNCVN---SPTAVRFYSF-QSHCYEHVLR-FRSSVCMVRCSP---RIVAVGLATQIYCFDALTLE 110 (882)
Q Consensus 39 ~~~~~v~~~~~~~~~~~~~~---sp~tVrlWDl-kTG~~V~tLk-f~s~V~sV~~S~---rlLAV~~d~qI~IWDa~T~e 110 (882)
||-|-+....+.+ .|.|+. +++.|-||+. ..-+...+++ |.++|..+.+++ .+|.++.|.+|+.||+.|++
T Consensus 45 gh~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~ 123 (338)
T KOG0265|consen 45 GHKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGK 123 (338)
T ss_pred CCcceEEEEEECC-CCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccce
Confidence 4455554444444 455553 6789999995 3344555666 899999999986 35556678899999999999
Q ss_pred eeEEEecCCCcccCCCCcccccccceeeEEcCcEEEEeCC--CeEeccCCCC-CCccCCCCCCCCCcCCCCCccEEEeec
Q 002778 111 NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASN--TLLLSNSGRL-SPQNLTPSGVSPSTSPGGSSLVARYAM 187 (882)
Q Consensus 111 ~l~tL~t~p~p~~~~~~~~g~~~~~g~lAlspR~LAyss~--~v~lwdtG~v-s~q~lt~~~vs~s~SP~~GslVA~~A~ 187 (882)
+.+..++|..- +|. ..+.-++|..|...++ +++|||.-.- ..+.++.
T Consensus 124 ~~rk~k~h~~~---------vNs-~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-------------------- 173 (338)
T KOG0265|consen 124 RIRKHKGHTSF---------VNS-LDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-------------------- 173 (338)
T ss_pred eeehhccccce---------eee-cCccccCCeEEEecCCCceEEEEeecccchhhcccc--------------------
Confidence 99999887652 121 1244556677776643 7889984110 0111100
Q ss_pred cchhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECC
Q 002778 188 EHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP 267 (882)
Q Consensus 188 essk~la~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSP 267 (882)
+|.. .++.++..+... -+|..|+.|++||+..+..+.++.+|.++|..|..+|
T Consensus 174 ---------------kyql--------tAv~f~d~s~qv----~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~ 226 (338)
T KOG0265|consen 174 ---------------KYQL--------TAVGFKDTSDQV----ISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSR 226 (338)
T ss_pred ---------------ceeE--------EEEEecccccce----eeccccCceeeeccccCcceEEeecccCceeeEEecc
Confidence 0000 001111000000 1467899999999999999999999999999999999
Q ss_pred CCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCC--cEEEEEEccCCCEEEEEeCCCeEEE
Q 002778 268 SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA--TIQDICFSHYSQWIAIVSSKGTCHV 345 (882)
Q Consensus 268 dGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a--~I~sLaFSPDg~~LAsgS~DGTVhI 345 (882)
+|..|.+-+-|- ++++||++|. ....+++..+..+.++- .....+|||+++++.++|.|..++|
T Consensus 227 ~gs~llsnsMd~-tvrvwd~rp~-------------~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyv 292 (338)
T KOG0265|consen 227 YGSFLLSNSMDN-TVRVWDVRPF-------------APSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYV 292 (338)
T ss_pred CCCccccccccc-eEEEEEeccc-------------CCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEE
Confidence 999999999855 5999999873 22234566554443332 2456799999999999999999999
Q ss_pred EECCCCCCccccccccCCCCCCcccCC
Q 002778 346 FVLSPFGGDSGFQTLSSQGGDPYLFPV 372 (882)
Q Consensus 346 WdI~~~gg~~~l~~H~~~~~~~~~sp~ 372 (882)
||....+....+-+|..++....++|-
T Consensus 293 wd~~~r~~lyklpGh~gsvn~~~Fhp~ 319 (338)
T KOG0265|consen 293 WDTTSRRILYKLPGHYGSVNEVDFHPT 319 (338)
T ss_pred eecccccEEEEcCCcceeEEEeeecCC
Confidence 999888888889999877777666664
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-16 Score=172.46 Aligned_cols=232 Identities=19% Similarity=0.226 Sum_probs=166.0
Q ss_pred ccccccccCccCCCCCccc--ccCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcCC---EEEEEECCeEEEEECCCCcee
Q 002778 39 SHLGGVRDGMMDSQSGNCV--NSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSPR---IVAVGLATQIYCFDALTLENK 112 (882)
Q Consensus 39 ~~~~~v~~~~~~~~~~~~~--~sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~r---lLAV~~d~qI~IWDa~T~e~l 112 (882)
||+|=||..-.++.|.=.+ ..+++++|||+.||+...+|. |-..|+.|+++.+ ++.++.|++|+|||+...+.+
T Consensus 149 gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvI 228 (460)
T KOG0285|consen 149 GHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVI 228 (460)
T ss_pred hccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhH
Confidence 6777776666665542111 268999999999999999998 8899999999863 455566889999999998887
Q ss_pred EEEecCCCcccCCCCcccccccceeeEEcC--cEEEEeC--CCeEeccC-CCCCCccCCCCCCCCCcCCCCCccEEEeec
Q 002778 113 FSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYAS--NTLLLSNS-GRLSPQNLTPSGVSPSTSPGGSSLVARYAM 187 (882)
Q Consensus 113 ~tL~t~p~p~~~~~~~~g~~~~~g~lAlsp--R~LAyss--~~v~lwdt-G~vs~q~lt~~~vs~s~SP~~GslVA~~A~ 187 (882)
+...+|-. +.-.+++-| +.|+.++ ...++||. .+.+...|.+. ...|+++..
T Consensus 229 R~YhGHlS-------------~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH----------~~~V~~V~~ 285 (460)
T KOG0285|consen 229 RHYHGHLS-------------GVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGH----------TNPVASVMC 285 (460)
T ss_pred HHhccccc-------------eeEEEeccccceeEEecCCcceEEEeeecccceEEEecCC----------CCcceeEEe
Confidence 76666544 234566666 6677665 36889984 22222212110 001111110
Q ss_pred cchhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECC
Q 002778 188 EHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP 267 (882)
Q Consensus 188 essk~la~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSP 267 (882)
...++ ++ .+++.|++|++||+..++...++..|...|.||+.+|
T Consensus 286 -----------------------------~~~dp--qv-----it~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP 329 (460)
T KOG0285|consen 286 -----------------------------QPTDP--QV-----ITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHP 329 (460)
T ss_pred -----------------------------ecCCC--ce-----EEecCCceEEEeeeccCceeEeeecccceeeEEecCC
Confidence 00111 11 1678999999999999999999999999999999999
Q ss_pred CCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEE
Q 002778 268 SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV 347 (882)
Q Consensus 268 dGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWd 347 (882)
.-.++|+||.| +|+-|++.. | ..+..+ .|+ ++.|.+|+-..|+ ++++|+++|++..||
T Consensus 330 ~e~~fASas~d--nik~w~~p~-------g----------~f~~nl-sgh-~~iintl~~nsD~-v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 330 KENLFASASPD--NIKQWKLPE-------G----------EFLQNL-SGH-NAIINTLSVNSDG-VLVSGGDNGSIMFWD 387 (460)
T ss_pred chhhhhccCCc--cceeccCCc-------c----------chhhcc-ccc-cceeeeeeeccCc-eEEEcCCceEEEEEe
Confidence 99999999984 499999932 3 234443 343 4689999998887 778999999999999
Q ss_pred CCCC
Q 002778 348 LSPF 351 (882)
Q Consensus 348 I~~~ 351 (882)
...+
T Consensus 388 wksg 391 (460)
T KOG0285|consen 388 WKSG 391 (460)
T ss_pred cCcC
Confidence 8764
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.9e-16 Score=173.46 Aligned_cols=219 Identities=16% Similarity=0.225 Sum_probs=158.3
Q ss_pred cCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC--CEEEE-EECCeEEEEECCCCceeEEEecCCCcccCCCCccccccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAV-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 134 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~--rlLAV-~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~ 134 (882)
.++.+|+|+. +|..+.+|. |+++|.++++++ .+|++ +-|+++.+||+.+++....+..+..|.
T Consensus 255 ~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~------------ 321 (524)
T KOG0273|consen 255 EDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPA------------ 321 (524)
T ss_pred cCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCc------------
Confidence 5799999996 788888886 889999999997 34544 568899999999998877776555431
Q ss_pred ceeeEEcCcEE-----EEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccC
Q 002778 135 YGPMAVGPRWL-----AYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELL 209 (882)
Q Consensus 135 ~g~lAlspR~L-----Ayss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~ 209 (882)
+.-.|+ |.++. ++.-.|.++. ..+..+++.+|..
T Consensus 322 -----lDVdW~~~~~F~ts~t--------------------------d~~i~V~kv~-------~~~P~~t~~GH~g--- 360 (524)
T KOG0273|consen 322 -----LDVDWQSNDEFATSST--------------------------DGCIHVCKVG-------EDRPVKTFIGHHG--- 360 (524)
T ss_pred -----cceEEecCceEeecCC--------------------------CceEEEEEec-------CCCcceeeecccC---
Confidence 111222 11111 1000011111 1122345555442
Q ss_pred CCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCC---------CEEEEEEcCCC
Q 002778 210 PDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSG---------TLLVTASVYGN 280 (882)
Q Consensus 210 pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdG---------tlLATAS~dGt 280 (882)
..+++-.++.+.+++ +++.|++++||..........|++|...|..+.++|+| ..||+++.|++
T Consensus 361 ---~V~alk~n~tg~LLa----S~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dst 433 (524)
T KOG0273|consen 361 ---EVNALKWNPTGSLLA----SCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDST 433 (524)
T ss_pred ---ceEEEEECCCCceEE----EecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCe
Confidence 234445566666654 56899999999999888999999999999999999965 58999999765
Q ss_pred EEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccccc
Q 002778 281 NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQ 358 (882)
Q Consensus 281 ~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~ 358 (882)
+++||+.. | +++++|.++ ..+|++|+|||||+|||+|+.||.||||++..+.-....+
T Consensus 434 -V~lwdv~~-------g----------v~i~~f~kH--~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~ 491 (524)
T KOG0273|consen 434 -VKLWDVES-------G----------VPIHTLMKH--QEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ 491 (524)
T ss_pred -EEEEEccC-------C----------ceeEeeccC--CCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeec
Confidence 89999974 4 578888653 4689999999999999999999999999998765544433
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.9e-16 Score=181.42 Aligned_cols=264 Identities=18% Similarity=0.167 Sum_probs=177.8
Q ss_pred cCCeEEEEECCCCeEEEEEEcC-C----cEEEEEEcCCEEEEEECCeEEEEECCCCceeEEEecCCCcccCCCCcccccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLRFR-S----SVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 133 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLkf~-s----~V~sV~~S~rlLAV~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~ 133 (882)
..+++++||.++++++...+-+ + .+..+.-+.+++++..+++|.+||..+++....+.++....
T Consensus 258 ~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI----------- 326 (775)
T KOG0319|consen 258 GSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEI----------- 326 (775)
T ss_pred CCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhh-----------
Confidence 5688999999999988776533 1 12223334588888999999999999999888887765421
Q ss_pred cceeeEEcC--cEEEEeCCC--eEeccCCCCCCccCCCC---CCCCCcCCCCCccEEEeeccchhhhhc---c-----cc
Q 002778 134 GYGPMAVGP--RWLAYASNT--LLLSNSGRLSPQNLTPS---GVSPSTSPGGSSLVARYAMEHSKQFAA---G-----LS 198 (882)
Q Consensus 134 ~~g~lAlsp--R~LAyss~~--v~lwdtG~vs~q~lt~~---~vs~s~SP~~GslVA~~A~essk~la~---G-----li 198 (882)
+....+|| ++||.+.|. +++.+.-....|.+.+. ..++.. .+.|.+++...+|.+..+.. + ++
T Consensus 327 -~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~-~~~g~llat~sKD~svilWr~~~~~~~~~~~ 404 (775)
T KOG0319|consen 327 -LDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDV-WSSGDLLATGSKDKSVILWRLNNNCSKSLCV 404 (775)
T ss_pred -eeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeee-cccCcEEEEecCCceEEEEEecCCcchhhhh
Confidence 23345576 888888764 44544322223333331 123331 13456777777775543331 1 11
Q ss_pred ccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCc-----EE----EEeccCCCCeEEEEECCCC
Q 002778 199 KTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA-----II----SQFKAHTSPISALCFDPSG 269 (882)
Q Consensus 199 ktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~-----~v----~~f~aH~spIsaLaFSPdG 269 (882)
+..++|-..+. .+..+ +.++....++++|+++++|++..-+ .+ .+.++|...|++++.+|+.
T Consensus 405 a~~~gH~~svg------ava~~---~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~nd 475 (775)
T KOG0319|consen 405 AQANGHTNSVG------AVAGS---KLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPND 475 (775)
T ss_pred hhhcccccccc------eeeec---ccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCC
Confidence 22233322211 11111 1111111267999999999997511 11 2446899999999999999
Q ss_pred CEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECC
Q 002778 270 TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 349 (882)
Q Consensus 270 tlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~ 349 (882)
.++||||.|. +.+||++.. + .++..| +||++ .|+||.|||.++.||++|.|+||+||.|+
T Consensus 476 kLiAT~SqDk-taKiW~le~-------~----------~l~~vL-sGH~R-Gvw~V~Fs~~dq~laT~SgD~TvKIW~is 535 (775)
T KOG0319|consen 476 KLIATGSQDK-TAKIWDLEQ-------L----------RLLGVL-SGHTR-GVWCVSFSKNDQLLATCSGDKTVKIWSIS 535 (775)
T ss_pred ceEEeccccc-ceeeecccC-------c----------eEEEEe-eCCcc-ceEEEEeccccceeEeccCCceEEEEEec
Confidence 9999999965 599999952 2 356666 68876 59999999999999999999999999999
Q ss_pred CCCCccccccccCCC
Q 002778 350 PFGGDSGFQTLSSQG 364 (882)
Q Consensus 350 ~~gg~~~l~~H~~~~ 364 (882)
++.+..+|.+|.+.+
T Consensus 536 ~fSClkT~eGH~~aV 550 (775)
T KOG0319|consen 536 TFSCLKTFEGHTSAV 550 (775)
T ss_pred cceeeeeecCcccee
Confidence 999999999998544
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.1e-17 Score=174.94 Aligned_cols=212 Identities=17% Similarity=0.165 Sum_probs=155.0
Q ss_pred cCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcCCEEEEEE-CCeEEEEECCCCceeEEEecCCCcccCCCCcccccccce
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 136 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~rlLAV~~-d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g 136 (882)
-++||+|||.++-++++.|. |.+.|..+.+..+++++|. |.+|+|||+.|++.+.++..|... .-
T Consensus 215 rDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tlihHcea-------------VL 281 (499)
T KOG0281|consen 215 RDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEA-------------VL 281 (499)
T ss_pred ccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhHHhhhcce-------------eE
Confidence 46999999999999999886 8999999999999888875 678999999999999998776541 11
Q ss_pred eeEEcCcEEEEeC--CCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCC
Q 002778 137 PMAVGPRWLAYAS--NTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS 214 (882)
Q Consensus 137 ~lAlspR~LAyss--~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~ 214 (882)
-+-|+..++...+ .++.+|+.. +|.. ....++ |-++... .
T Consensus 282 hlrf~ng~mvtcSkDrsiaVWdm~----------------sps~---------it~rrV-------LvGHrAa------V 323 (499)
T KOG0281|consen 282 HLRFSNGYMVTCSKDRSIAVWDMA----------------SPTD---------ITLRRV-------LVGHRAA------V 323 (499)
T ss_pred EEEEeCCEEEEecCCceeEEEecc----------------CchH---------HHHHHH-------Hhhhhhh------e
Confidence 2344555565554 367788741 1110 011111 1122111 0
Q ss_pred CCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccC
Q 002778 215 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS 294 (882)
Q Consensus 215 s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~ 294 (882)
....+ +.+++. +++.|.+|++|++.+++.+.++.+|...|.|+.+ .|+++++||.|. +||+||+..
T Consensus 324 NvVdf--d~kyIV----sASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDn-tIRlwdi~~----- 389 (499)
T KOG0281|consen 324 NVVDF--DDKYIV----SASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDN-TIRLWDIEC----- 389 (499)
T ss_pred eeecc--ccceEE----EecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCc-eEEEEeccc-----
Confidence 01111 234443 5678999999999999999999999999999987 589999999955 599999963
Q ss_pred CCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 295 GSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 295 ~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
| .++..| .|+. .-|.+|.| |.+.|++|.-||+|+|||+...
T Consensus 390 --G----------~cLRvL-eGHE-eLvRciRF--d~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 390 --G----------ACLRVL-EGHE-ELVRCIRF--DNKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred --c----------HHHHHH-hchH-Hhhhheee--cCceeeeccccceEEEEecccc
Confidence 4 455555 4665 46999999 6789999999999999999864
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.9e-15 Score=146.08 Aligned_cols=224 Identities=18% Similarity=0.210 Sum_probs=154.5
Q ss_pred CCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC--CEEEEEE-CCeEEEEECCCCceeEEEecCCCcccCCCCcccccccc
Q 002778 60 PTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGY 135 (882)
Q Consensus 60 p~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~--rlLAV~~-d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~ 135 (882)
++.|++||+.+++....+. +...+..+.+.+ +.|+++. ++.|++||+.+++.+..+..+..+ .
T Consensus 30 ~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~-------------i 96 (289)
T cd00200 30 DGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSY-------------V 96 (289)
T ss_pred CcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCc-------------E
Confidence 6889999999998887776 667888999886 3666654 789999999988777777654431 2
Q ss_pred eeeEEcC--cEEEEeC--CCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCC
Q 002778 136 GPMAVGP--RWLAYAS--NTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPD 211 (882)
Q Consensus 136 g~lAlsp--R~LAyss--~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pd 211 (882)
..+++.+ ++++... ..+.+|+... +..+..+. .+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------------------~~~~~~~~----------------~~~------ 135 (289)
T cd00200 97 SSVAFSPDGRILSSSSRDKTIKVWDVET-------------------GKCLTTLR----------------GHT------ 135 (289)
T ss_pred EEEEEcCCCCEEEEecCCCeEEEEECCC-------------------cEEEEEec----------------cCC------
Confidence 3456666 5666554 3577776420 00000000 000
Q ss_pred CCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCc
Q 002778 212 GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSC 291 (882)
Q Consensus 212 gs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~ 291 (882)
+....+..++....+. .+..+|.|++||+.+++.+..+..|..+|.+++|+|+|+.|++++.+|. |++||+..
T Consensus 136 ~~i~~~~~~~~~~~l~----~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~-i~i~d~~~-- 208 (289)
T cd00200 136 DWVNSVAFSPDGTFVA----SSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT-IKLWDLST-- 208 (289)
T ss_pred CcEEEEEEcCcCCEEE----EEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCc-EEEEECCC--
Confidence 0001111222223322 2346899999999999999999999999999999999999999998665 89999953
Q ss_pred ccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCcccccccc
Q 002778 292 MRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 361 (882)
Q Consensus 292 ~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~H~ 361 (882)
+ ..+..+. ++ ...|.+++|+|++.++++++.+|++++|++........+..|.
T Consensus 209 -----~----------~~~~~~~-~~-~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~ 261 (289)
T cd00200 209 -----G----------KCLGTLR-GH-ENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHT 261 (289)
T ss_pred -----C----------ceecchh-hc-CCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccC
Confidence 2 2333331 32 3479999999999999999989999999998765555555554
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.6e-15 Score=158.44 Aligned_cols=205 Identities=16% Similarity=0.206 Sum_probs=139.0
Q ss_pred EEEE-cCCcEEEEEEcC--CEEE-EEECCeEEEEECCCCceeEEEecCCCcccCCCCcccccccceeeEEcC--cEEEEe
Q 002778 75 HVLR-FRSSVCMVRCSP--RIVA-VGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYA 148 (882)
Q Consensus 75 ~tLk-f~s~V~sV~~S~--rlLA-V~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g~lAlsp--R~LAys 148 (882)
++|+ |-+.|+++.+++ ++|+ .++|+.+.|||.-|....+-+..... .+=.+|++| +++|..
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~-------------WVMtCA~sPSg~~VAcG 115 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSS-------------WVMTCAYSPSGNFVACG 115 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCce-------------eEEEEEECCCCCeEEec
Confidence 6787 889999999975 4444 46789999999998887777743222 112344455 555544
Q ss_pred C--CCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccc--cCCCCCCCCccCCCccc
Q 002778 149 S--NTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQE--LLPDGSSSPVSPNSVWK 224 (882)
Q Consensus 149 s--~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~--l~pdgs~s~~S~ss~~k 224 (882)
+ +...|. ++++ +++.. ++...+ .+...++|.+. ++.++ .
T Consensus 116 GLdN~Csiy---------------~ls~-~d~~g-~~~v~r---------~l~gHtgylScC~f~dD~-----------~ 158 (343)
T KOG0286|consen 116 GLDNKCSIY---------------PLST-RDAEG-NVRVSR---------ELAGHTGYLSCCRFLDDN-----------H 158 (343)
T ss_pred CcCceeEEE---------------eccc-ccccc-cceeee---------eecCccceeEEEEEcCCC-----------c
Confidence 3 111111 1110 00000 000000 01112333322 22222 1
Q ss_pred cccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEecCCCcccCCCCCCcccc
Q 002778 225 VGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW 303 (882)
Q Consensus 225 ~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSP-dGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~ 303 (882)
. + +++.|.++-+||+++++.+..|.+|.+.|.+|+++| +++.++|++.|.+ .+|||+.. |
T Consensus 159 i--l---T~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~-aklWD~R~-------~------ 219 (343)
T KOG0286|consen 159 I--L---TGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKS-AKLWDVRS-------G------ 219 (343)
T ss_pred e--E---ecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccc-eeeeeccC-------c------
Confidence 1 1 567899999999999999999999999999999999 9999999999765 89999964 3
Q ss_pred CCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCc
Q 002778 304 NSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD 354 (882)
Q Consensus 304 sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~ 354 (882)
.+++.|. |+. ..|.+|+|-|+|.-+|+||+|+|+++|||......
T Consensus 220 ----~c~qtF~-ghe-sDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~ 264 (343)
T KOG0286|consen 220 ----QCVQTFE-GHE-SDINSVRFFPSGDAFATGSDDATCRLYDLRADQEL 264 (343)
T ss_pred ----ceeEeec-ccc-cccceEEEccCCCeeeecCCCceeEEEeecCCcEE
Confidence 4666764 655 57999999999999999999999999999875443
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.9e-15 Score=171.04 Aligned_cols=185 Identities=17% Similarity=0.160 Sum_probs=152.2
Q ss_pred cCCeEEEEECCCCeEEEE-EE-cCCcEEEEEEc--CCEEEEEE-CCeEEEEECCCCceeEEEecCCCcccCCCCcccccc
Q 002778 59 SPTAVRFYSFQSHCYEHV-LR-FRSSVCMVRCS--PRIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 133 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~t-Lk-f~s~V~sV~~S--~rlLAV~~-d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~ 133 (882)
.+.+|++||..++..+.+ +. |.+.|+++++. .++|+.|. |.++++||+.++++.+++.+|+..
T Consensus 226 ~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~st------------ 293 (537)
T KOG0274|consen 226 DDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSS------------ 293 (537)
T ss_pred CCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCce------------
Confidence 468899999999999988 76 89999999998 67877776 889999999999999999887661
Q ss_pred cceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCC
Q 002778 134 GYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS 213 (882)
Q Consensus 134 ~~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs 213 (882)
...+.+.+..
T Consensus 294 -v~~~~~~~~~--------------------------------------------------------------------- 303 (537)
T KOG0274|consen 294 -VRCLTIDPFL--------------------------------------------------------------------- 303 (537)
T ss_pred -EEEEEccCce---------------------------------------------------------------------
Confidence 0111110000
Q ss_pred CCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCccc
Q 002778 214 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR 293 (882)
Q Consensus 214 ~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~ 293 (882)
+. +|+.|.+|+|||+.+++.+..+.+|..+|.++.++ +.+|++++.|| .|+|||+.+
T Consensus 304 --------------~~--sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~-~v~VW~~~~---- 360 (537)
T KOG0274|consen 304 --------------LV--SGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDG-TVKVWDPRT---- 360 (537)
T ss_pred --------------Ee--eccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCc-eEEEEEhhh----
Confidence 00 24578999999999999999999999999999998 88999999988 599999975
Q ss_pred CCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCC-CCccccccccCCC
Q 002778 294 SGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF-GGDSGFQTLSSQG 364 (882)
Q Consensus 294 ~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~-gg~~~l~~H~~~~ 364 (882)
+ +.++.| +||+ ..|+++.|... ..+.+||.|++|++||+... .+..++.+|.+-+
T Consensus 361 ---~----------~cl~sl-~gH~-~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v 416 (537)
T KOG0274|consen 361 ---G----------KCLKSL-SGHT-GRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLV 416 (537)
T ss_pred ---c----------eeeeee-cCCc-ceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccc
Confidence 3 577777 5765 57999988766 89999999999999999998 8888999997533
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-14 Score=176.81 Aligned_cols=222 Identities=13% Similarity=0.088 Sum_probs=146.2
Q ss_pred cCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC---CEEEEEE-CCeEEEEECCCCceeEEEecCCCcccCCCCcccccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP---RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 133 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~---rlLAV~~-d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~ 133 (882)
.+++|+|||+.+++.+..++ |...|++|+|++ .+|+++. |+.|++||+.+++.+.++..+..
T Consensus 553 ~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~------------- 619 (793)
T PLN00181 553 FEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKAN------------- 619 (793)
T ss_pred CCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCC-------------
Confidence 57999999999999999987 888999999974 4676654 67899999999998888764321
Q ss_pred cceeeEEc---CcEEEEeC--CCeEeccCCCC--CCccCCCCCCCCCcCCCCCccEEEeeccchhhhhcccccccccccc
Q 002778 134 GYGPMAVG---PRWLAYAS--NTLLLSNSGRL--SPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQ 206 (882)
Q Consensus 134 ~~g~lAls---pR~LAyss--~~v~lwdtG~v--s~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~ 206 (882)
...+++. ..+||+++ ..+.+|+.... ....+.. ....|
T Consensus 620 -v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~----------h~~~V------------------------ 664 (793)
T PLN00181 620 -ICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIG----------HSKTV------------------------ 664 (793)
T ss_pred -eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecC----------CCCCE------------------------
Confidence 1234442 26777664 46888985211 0000000 00000
Q ss_pred ccCCCCCCCCccCCCccccccccccccCCCceEEEEECCC------CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC
Q 002778 207 ELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT------RAIISQFKAHTSPISALCFDPSGTLLVTASVYGN 280 (882)
Q Consensus 207 ~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s------~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt 280 (882)
..+.+. ++..+. +++.||+|+|||+.. .+.+..|.+|...+..++|+|+|.+||+|+.||+
T Consensus 665 --------~~v~f~-~~~~lv----s~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~ 731 (793)
T PLN00181 665 --------SYVRFV-DSSTLV----SSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNE 731 (793)
T ss_pred --------EEEEEe-CCCEEE----EEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCE
Confidence 000111 112221 457899999999974 3568899999999999999999999999999775
Q ss_pred EEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEEC
Q 002778 281 NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 348 (882)
Q Consensus 281 ~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI 348 (882)
|+||+..... ........ ....+..+.-..+...|.+++|+|++..|++++.||+|+||++
T Consensus 732 -v~iw~~~~~~-----~~~s~~~~-~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 732 -VFVYHKAFPM-----PVLSYKFK-TIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred -EEEEECCCCC-----ceEEEecc-cCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 8999974210 00000000 0000000000112246999999999999999999999999997
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.1e-15 Score=164.06 Aligned_cols=225 Identities=20% Similarity=0.255 Sum_probs=161.4
Q ss_pred Cccc---ccCCeEEEEECCCCeEEEEEEcCCcE-EEEEEcC-CEEEEE-ECCeEEEEECCCCceeEEEecCCCcccCCCC
Q 002778 54 GNCV---NSPTAVRFYSFQSHCYEHVLRFRSSV-CMVRCSP-RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQG 127 (882)
Q Consensus 54 ~~~~---~sp~tVrlWDlkTG~~V~tLkf~s~V-~sV~~S~-rlLAV~-~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~ 127 (882)
|+++ ..++++.+||..+|+.-..+.|.+.. .+|.+-. +-+|++ .+..|+|+.+.--....++.+|.++
T Consensus 288 G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~------ 361 (524)
T KOG0273|consen 288 GTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGE------ 361 (524)
T ss_pred CCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCc------
Confidence 5555 36799999999999999999987766 8888754 555554 5778999999888888899888774
Q ss_pred cccccccceeeEEcC--cEEEEeCC--CeEeccCCCCC-CccCCCCCCCCCcCCCCCccEEEeeccchhhhhcccccccc
Q 002778 128 AVGINVGYGPMAVGP--RWLAYASN--TLLLSNSGRLS-PQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLS 202 (882)
Q Consensus 128 ~~g~~~~~g~lAlsp--R~LAyss~--~v~lwdtG~vs-~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs 202 (882)
.+.+-+.| ..||.+++ +++||+.|.-- ...|... +|. ++ ++
T Consensus 362 -------V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~H---------------------ske----i~-t~- 407 (524)
T KOG0273|consen 362 -------VNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAH---------------------SKE----IY-TI- 407 (524)
T ss_pred -------eEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhh---------------------ccc----ee-eE-
Confidence 35677776 78888764 79999864211 0111100 000 00 00
Q ss_pred ccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEE
Q 002778 203 KYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNI 282 (882)
Q Consensus 203 ~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~I 282 (882)
.-.|.+. .-.++ +....++ ++..|++|++||+..+.++..|..|+.||.+|+|+|+|++||+++.||. |
T Consensus 408 ----~wsp~g~---v~~n~-~~~~~l~--sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~-V 476 (524)
T KOG0273|consen 408 ----KWSPTGP---VTSNP-NMNLMLA--SASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGC-V 476 (524)
T ss_pred ----eecCCCC---ccCCC-cCCceEE--EeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCe-e
Confidence 0011110 00011 1111111 5678999999999999999999999999999999999999999999775 8
Q ss_pred EEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECC
Q 002778 283 NIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 349 (882)
Q Consensus 283 rVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~ 349 (882)
+||++.. | .+++-.+|. ..|..|+|+.+|.+|+++-+||.+.+-|+.
T Consensus 477 ~iws~~~-------~-----------~l~~s~~~~--~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 477 HIWSTKT-------G-----------KLVKSYQGT--GGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred Eeccccc-------h-----------heeEeecCC--CeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 9999964 3 455555553 469999999999999999999999998874
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.9e-15 Score=155.10 Aligned_cols=122 Identities=20% Similarity=0.224 Sum_probs=105.8
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEE
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~ 311 (882)
+++-||++++||+.+++...+|.+|+.-|.+++|+||.+.++|+|.|. +|++|++. | .+.|
T Consensus 80 S~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDk-Tiklwnt~--------g----------~ck~ 140 (315)
T KOG0279|consen 80 SASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDK-TIKLWNTL--------G----------VCKY 140 (315)
T ss_pred eccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcc-eeeeeeec--------c----------cEEE
Confidence 457899999999999999999999999999999999999999999955 59999995 3 4788
Q ss_pred EEEecccCCcEEEEEEccC--CCEEEEEeCCCeEEEEECCCCCCccccccccCCCCCCcccCC
Q 002778 312 KLHRGITSATIQDICFSHY--SQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPV 372 (882)
Q Consensus 312 ~L~RG~t~a~I~sLaFSPD--g~~LAsgS~DGTVhIWdI~~~gg~~~l~~H~~~~~~~~~sp~ 372 (882)
++.++..+..|.++.|+|. .-+|+++|.|+||+|||+....-..++-+|+..+....++|-
T Consensus 141 t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpD 203 (315)
T KOG0279|consen 141 TIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPD 203 (315)
T ss_pred EEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCC
Confidence 8877764678999999998 789999999999999999998888888888865554445543
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1e-15 Score=170.60 Aligned_cols=217 Identities=13% Similarity=0.096 Sum_probs=154.7
Q ss_pred cCCeEEEEECCC-CeEEEEEE-cCCcEEEEEEcC---CEEEEEECCeEEEEECCCCceeEEEecCCCcccCCCCcccccc
Q 002778 59 SPTAVRFYSFQS-HCYEHVLR-FRSSVCMVRCSP---RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 133 (882)
Q Consensus 59 sp~tVrlWDlkT-G~~V~tLk-f~s~V~sV~~S~---rlLAV~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~ 133 (882)
.+++|+||++.. +.+++++. |.-+|++++|+. ++|.+++|..|++||+.||+++.++.+...|
T Consensus 235 mD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~------------ 302 (503)
T KOG0282|consen 235 MDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVP------------ 302 (503)
T ss_pred CCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCc------------
Confidence 578999999987 99999998 788999999986 6888899999999999999999888653221
Q ss_pred cceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCC
Q 002778 134 GYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS 213 (882)
Q Consensus 134 ~~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs 213 (882)
..+. |.+ ++-- .+
T Consensus 303 --~cvk-------f~p---------------------------d~~n--------------------------~f----- 315 (503)
T KOG0282|consen 303 --TCVK-------FHP---------------------------DNQN--------------------------IF----- 315 (503)
T ss_pred --eeee-------cCC---------------------------CCCc--------------------------EE-----
Confidence 1111 111 1100 00
Q ss_pred CCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcc-
Q 002778 214 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM- 292 (882)
Q Consensus 214 ~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~- 292 (882)
+ .|..|+.|+.||+.++++++....|-++|..+.|=++|+.++|+|.+++ ++||+......
T Consensus 316 --------------l---~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks-~riWe~~~~v~i 377 (503)
T KOG0282|consen 316 --------------L---VGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKS-VRIWENRIPVPI 377 (503)
T ss_pred --------------E---EecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCcc-EEEEEcCCCccc
Confidence 1 2456899999999999999999999999999999999999999998765 89999753210
Q ss_pred cC---------------CCC----CCccccCC---cccE-----EEEEEecccCC-cEEEEEEccCCCEEEEEeCCCeEE
Q 002778 293 RS---------------GSG----NHKYDWNS---SHVH-----LYKLHRGITSA-TIQDICFSHYSQWIAIVSSKGTCH 344 (882)
Q Consensus 293 ~~---------------~sG----~~~~d~ss---s~~~-----l~~L~RG~t~a-~I~sLaFSPDg~~LAsgS~DGTVh 344 (882)
.. -.+ +++.+..- +... .++..+|+..+ --..+.|||||++|++|+.||.+.
T Consensus 378 k~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~ 457 (503)
T KOG0282|consen 378 KNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVN 457 (503)
T ss_pred hhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEE
Confidence 00 000 00010000 0000 11112344322 235689999999999999999999
Q ss_pred EEECCCCCCccccccccCCCCCCcccCC
Q 002778 345 VFVLSPFGGDSGFQTLSSQGGDPYLFPV 372 (882)
Q Consensus 345 IWdI~~~gg~~~l~~H~~~~~~~~~sp~ 372 (882)
+||..+.....++.+|+....+...+|.
T Consensus 458 ~wdwkt~kl~~~lkah~~~ci~v~wHP~ 485 (503)
T KOG0282|consen 458 FWDWKTTKLVSKLKAHDQPCIGVDWHPV 485 (503)
T ss_pred EeechhhhhhhccccCCcceEEEEecCC
Confidence 9999999888899999765555555553
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.4e-14 Score=162.80 Aligned_cols=201 Identities=13% Similarity=0.099 Sum_probs=139.7
Q ss_pred ccccccccCccCCCCCccc---ccCCeEEEEECCCCe-------EEEEEE-cCCcEEEEEEcC---CEEEEE-ECCeEEE
Q 002778 39 SHLGGVRDGMMDSQSGNCV---NSPTAVRFYSFQSHC-------YEHVLR-FRSSVCMVRCSP---RIVAVG-LATQIYC 103 (882)
Q Consensus 39 ~~~~~v~~~~~~~~~~~~~---~sp~tVrlWDlkTG~-------~V~tLk-f~s~V~sV~~S~---rlLAV~-~d~qI~I 103 (882)
||.+.|.+....+.+++.+ ..+++|++||+.++. .+.+|. |...|..|+|++ .+|+++ .|+.|+|
T Consensus 73 GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrI 152 (493)
T PTZ00421 73 GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNV 152 (493)
T ss_pred CCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEE
Confidence 5666676666555455544 357999999998763 456665 788999999986 467765 4788999
Q ss_pred EECCCCceeEEEecCCCcccCCCCcccccccceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEE
Q 002778 104 FDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVA 183 (882)
Q Consensus 104 WDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA 183 (882)
||+.+++.+.++..|..+ ... |++..+ |.++
T Consensus 153 WDl~tg~~~~~l~~h~~~-------------V~s-------la~spd----------------------------G~lL- 183 (493)
T PTZ00421 153 WDVERGKAVEVIKCHSDQ-------------ITS-------LEWNLD----------------------------GSLL- 183 (493)
T ss_pred EECCCCeEEEEEcCCCCc-------------eEE-------EEEECC----------------------------CCEE-
Confidence 999999888877665441 122 333221 1110
Q ss_pred EeeccchhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCe-EE
Q 002778 184 RYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPI-SA 262 (882)
Q Consensus 184 ~~A~essk~la~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spI-sa 262 (882)
+ +++.||+|+|||+.+++.+..+.+|...+ ..
T Consensus 184 -------------------------------------------a----tgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~ 216 (493)
T PTZ00421 184 -------------------------------------------C----TTSKDKKLNIIDPRDGTIVSSVEAHASAKSQR 216 (493)
T ss_pred -------------------------------------------E----EecCCCEEEEEECCCCcEEEEEecCCCCcceE
Confidence 0 34678999999999999999999998764 46
Q ss_pred EEECCCCCEEEEEEc---CCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEe-
Q 002778 263 LCFDPSGTLLVTASV---YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS- 338 (882)
Q Consensus 263 LaFSPdGtlLATAS~---dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS- 338 (882)
+.|.+++.+|+|++. .+..|+|||+... . ..+... .......+....|++|+++|++++
T Consensus 217 ~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~------~----------~p~~~~-~~d~~~~~~~~~~d~d~~~L~lggk 279 (493)
T PTZ00421 217 CLWAKRKDLIITLGCSKSQQRQIMLWDTRKM------A----------SPYSTV-DLDQSSALFIPFFDEDTNLLYIGSK 279 (493)
T ss_pred EEEcCCCCeEEEEecCCCCCCeEEEEeCCCC------C----------CceeEe-ccCCCCceEEEEEcCCCCEEEEEEe
Confidence 789999888887653 1346999999531 0 122221 112223566778999999999887
Q ss_pred CCCeEEEEECCCCC
Q 002778 339 SKGTCHVFVLSPFG 352 (882)
Q Consensus 339 ~DGTVhIWdI~~~g 352 (882)
.|++|++|++....
T Consensus 280 gDg~Iriwdl~~~~ 293 (493)
T PTZ00421 280 GEGNIRCFELMNER 293 (493)
T ss_pred CCCeEEEEEeeCCc
Confidence 59999999998643
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4e-15 Score=169.50 Aligned_cols=220 Identities=15% Similarity=0.154 Sum_probs=161.8
Q ss_pred CCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC--CEEEEEEC-CeEEEEECCCCceeEEEecCCCcccCCCCcccccccc
Q 002778 60 PTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVGLA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGY 135 (882)
Q Consensus 60 p~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~--rlLAV~~d-~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~ 135 (882)
.+.|.||+-.|...|++++ ..-+|++.+|-. +.+++|.| .+|+||+..|++.++++..|+.= .
T Consensus 34 nG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~Dy-------------I 100 (794)
T KOG0276|consen 34 NGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDY-------------I 100 (794)
T ss_pred cCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccc-------------e
Confidence 4679999999999999998 667899988853 67888765 58999999999999999988761 3
Q ss_pred eeeEEcC--cEEEEeCC--CeEeccC-CC-CCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccC
Q 002778 136 GPMAVGP--RWLAYASN--TLLLSNS-GR-LSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELL 209 (882)
Q Consensus 136 g~lAlsp--R~LAyss~--~v~lwdt-G~-vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~ 209 (882)
..+++.| -++-.+++ .+++|+= +. ...| ++.+|..-.+
T Consensus 101 R~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~q------------------------------------tfeGH~HyVM 144 (794)
T KOG0276|consen 101 RSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQ------------------------------------TFEGHEHYVM 144 (794)
T ss_pred eeeeecCCCCeEEecCCccEEEEeeccCceeeee------------------------------------EEcCcceEEE
Confidence 5677777 34444443 5677762 11 1111 2222211100
Q ss_pred CCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCC--CEEEEEEcCCCEEEEEec
Q 002778 210 PDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSG--TLLVTASVYGNNINIFRI 287 (882)
Q Consensus 210 pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdG--tlLATAS~dGt~IrVWdi 287 (882)
.+.+||- ....++ +++-|++|+||.+.+..+..+|.+|...|+++.|=+-| -+|+||+. +.+|+|||.
T Consensus 145 ------qv~fnPk-D~ntFa--S~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD-D~tiKvWDy 214 (794)
T KOG0276|consen 145 ------QVAFNPK-DPNTFA--SASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD-DLTIKVWDY 214 (794)
T ss_pred ------EEEecCC-Ccccee--eeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC-CceEEEeec
Confidence 0111110 001122 57889999999999999999999999999999998876 48999987 677999999
Q ss_pred CCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCcccc
Q 002778 288 MPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGF 357 (882)
Q Consensus 288 ~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l 357 (882)
.+. .++.+| .||++ .|..+.|.|.=.+|++||.|||++||.-.++..+.++
T Consensus 215 Qtk-----------------~CV~TL-eGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tL 265 (794)
T KOG0276|consen 215 QTK-----------------SCVQTL-EGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTL 265 (794)
T ss_pred chH-----------------HHHHHh-hcccc-cceEEEecCCCcEEEEecCCccEEEecCcceehhhhh
Confidence 641 356666 47775 5999999999999999999999999999988766554
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3e-15 Score=167.13 Aligned_cols=220 Identities=19% Similarity=0.215 Sum_probs=153.2
Q ss_pred ccccCCeEEEEECCCCeEEEEEE-cCCcEEEEEEc--CCEEEEEEC-CeEEEEECCCCceeEEEecCCCcccCCCCcccc
Q 002778 56 CVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCS--PRIVAVGLA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGI 131 (882)
Q Consensus 56 ~~~sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S--~rlLAV~~d-~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~ 131 (882)
++.+...|.||+..+...++++. |...|+++.|. +++||+|.+ +-|+|||..+...++++..|..|.
T Consensus 43 aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv--------- 113 (487)
T KOG0310|consen 43 AVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPV--------- 113 (487)
T ss_pred EEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCce---------
Confidence 55677899999999999888875 99999999997 688888864 569999977755667777776652
Q ss_pred cccceeeEEcC---cEEEEeCC--CeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhcccccccccccc
Q 002778 132 NVGYGPMAVGP---RWLAYASN--TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQ 206 (882)
Q Consensus 132 ~~~~g~lAlsp---R~LAyss~--~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~ 206 (882)
...-|.| ..++++++ .+++|+... +...+ .++++-.
T Consensus 114 ----~~~~f~~~d~t~l~s~sDd~v~k~~d~s~-------------------a~v~~----------------~l~~htD 154 (487)
T KOG0310|consen 114 ----HVTKFSPQDNTMLVSGSDDKVVKYWDLST-------------------AYVQA----------------ELSGHTD 154 (487)
T ss_pred ----eEEEecccCCeEEEecCCCceEEEEEcCC-------------------cEEEE----------------EecCCcc
Confidence 2344444 45566654 356776411 11000 1111110
Q ss_pred ccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCC-cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEE
Q 002778 207 ELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIF 285 (882)
Q Consensus 207 ~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~-~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVW 285 (882)
+...+..++ ...-+.+ +|+.||+|++||+.+. ..+..| .|..||..+.|=|+|+++|||+ |..++||
T Consensus 155 -YVR~g~~~~-----~~~hivv---tGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAg--Gn~vkVW 222 (487)
T KOG0310|consen 155 -YVRCGDISP-----ANDHIVV---TGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAG--GNSVKVW 222 (487)
T ss_pred -eeEeecccc-----CCCeEEE---ecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcC--CCeEEEE
Confidence 111111111 1111111 6899999999999987 455555 4899999999999999999998 7889999
Q ss_pred ecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCC
Q 002778 286 RIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 353 (882)
Q Consensus 286 di~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg 353 (882)
|+.. |. +.+..+ ..++..|+||++..|++.|.+++.|+.|+|||+..++-
T Consensus 223 Dl~~-------G~---------qll~~~--~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kv 272 (487)
T KOG0310|consen 223 DLTT-------GG---------QLLTSM--FNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKV 272 (487)
T ss_pred EecC-------Cc---------eehhhh--hcccceEEEEEeecCCceEeecccccceEEEEccceEE
Confidence 9954 31 233332 33456799999999999999999999999999887653
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.5e-14 Score=172.24 Aligned_cols=218 Identities=14% Similarity=0.077 Sum_probs=147.9
Q ss_pred cCCeEEEEECCC----Ce----EEEEEEcCCcEEEEEEcC---CEEEEE-ECCeEEEEECCCCceeEEEecCCCcccCCC
Q 002778 59 SPTAVRFYSFQS----HC----YEHVLRFRSSVCMVRCSP---RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQ 126 (882)
Q Consensus 59 sp~tVrlWDlkT----G~----~V~tLkf~s~V~sV~~S~---rlLAV~-~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~ 126 (882)
.+++|+|||+.+ +. .+..+.+.+.|.++++++ .+||++ .++.|+|||+.+++.+.++..|..+
T Consensus 503 ~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~----- 577 (793)
T PLN00181 503 VNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKR----- 577 (793)
T ss_pred CCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCC-----
Confidence 578999999854 21 233445667889999874 566665 5789999999999888888776552
Q ss_pred CcccccccceeeEEcC---cEEEEeC--CCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccc
Q 002778 127 GAVGINVGYGPMAVGP---RWLAYAS--NTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTL 201 (882)
Q Consensus 127 ~~~g~~~~~g~lAlsp---R~LAyss--~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktL 201 (882)
...+++.| .+|+.++ ..+++|+... +..+..+...
T Consensus 578 --------V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~-------------------~~~~~~~~~~------------- 617 (793)
T PLN00181 578 --------VWSIDYSSADPTLLASGSDDGSVKLWSINQ-------------------GVSIGTIKTK------------- 617 (793)
T ss_pred --------EEEEEEcCCCCCEEEEEcCCCEEEEEECCC-------------------CcEEEEEecC-------------
Confidence 35677764 5777664 3689998521 1111100000
Q ss_pred cccccccCCCCCCCCccC-CCccccccccccccCCCceEEEEECCCCc-EEEEeccCCCCeEEEEECCCCCEEEEEEcCC
Q 002778 202 SKYCQELLPDGSSSPVSP-NSVWKVGRHAGADMDNAGIVVVKDFVTRA-IISQFKAHTSPISALCFDPSGTLLVTASVYG 279 (882)
Q Consensus 202 s~~~~~l~pdgs~s~~S~-ss~~k~~~la~~tgs~dG~V~VWDl~s~~-~v~~f~aH~spIsaLaFSPdGtlLATAS~dG 279 (882)
.....+.+ .+++..++ +++.||.|++||+.+.+ .+..+.+|..+|.+++|. ++.+|+|++.|+
T Consensus 618 ----------~~v~~v~~~~~~g~~la----tgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~ 682 (793)
T PLN00181 618 ----------ANICCVQFPSESGRSLA----FGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDN 682 (793)
T ss_pred ----------CCeEEEEEeCCCCCEEE----EEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCC
Confidence 00000011 11123322 46789999999998765 567889999999999997 788999999977
Q ss_pred CEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 002778 280 NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 350 (882)
Q Consensus 280 t~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~ 350 (882)
+ |+|||+..... + . ....+..+ .|+. ..|..++|+|++++||+|+.|++|+||+...
T Consensus 683 ~-ikiWd~~~~~~----~---~----~~~~l~~~-~gh~-~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~ 739 (793)
T PLN00181 683 T-LKLWDLSMSIS----G---I----NETPLHSF-MGHT-NVKNFVGLSVSDGYIATGSETNEVFVYHKAF 739 (793)
T ss_pred E-EEEEeCCCCcc----c---c----CCcceEEE-cCCC-CCeeEEEEcCCCCEEEEEeCCCEEEEEECCC
Confidence 5 99999964100 0 0 01234454 3654 4689999999999999999999999999753
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.9e-15 Score=171.49 Aligned_cols=201 Identities=17% Similarity=0.196 Sum_probs=151.4
Q ss_pred cccccccccCccCCCCCccc---ccCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcCCEEEE-EECCeEEEEECCCCcee
Q 002778 38 RSHLGGVRDGMMDSQSGNCV---NSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSPRIVAV-GLATQIYCFDALTLENK 112 (882)
Q Consensus 38 ~~~~~~v~~~~~~~~~~~~~---~sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~rlLAV-~~d~qI~IWDa~T~e~l 112 (882)
.||.++|..-..+.. ++.+ ..++++|+||+.+|+++++|. |.+.|+.+...+.+++. +.|.+|++||+.++.++
T Consensus 246 ~GH~g~V~~l~~~~~-~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l 324 (537)
T KOG0274|consen 246 VGHFGGVWGLAFPSG-GDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACL 324 (537)
T ss_pred cCCCCCceeEEEecC-CCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceE
Confidence 366666644433321 1111 258999999999999999998 88999999988877776 46899999999999999
Q ss_pred EEEecCCCcccCCCCcccccccceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhh
Q 002778 113 FSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQ 192 (882)
Q Consensus 113 ~tL~t~p~p~~~~~~~~g~~~~~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~ 192 (882)
+++.+|..+ +..+. +.. +.+
T Consensus 325 ~l~~~h~~~-------------V~~v~-------~~~-----------------------------~~l----------- 344 (537)
T KOG0274|consen 325 NLLRGHTGP-------------VNCVQ-------LDE-----------------------------PLL----------- 344 (537)
T ss_pred EEecccccc-------------EEEEE-------ecC-----------------------------CEE-----------
Confidence 998775442 11211 110 000
Q ss_pred hhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEE
Q 002778 193 FAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLL 272 (882)
Q Consensus 193 la~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlL 272 (882)
+ +|..||+|+|||+.++++++.+++|+..|.++.|++. ..+
T Consensus 345 -----------------------------------v---sgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~ 385 (537)
T KOG0274|consen 345 -----------------------------------V---SGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRL 385 (537)
T ss_pred -----------------------------------E---EEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceE
Confidence 0 3467899999999999999999999999999999886 899
Q ss_pred EEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCC
Q 002778 273 VTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 352 (882)
Q Consensus 273 ATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~g 352 (882)
.+||.|+ .|++||+... ..+++.| .|++ +.+.++.+ .+++|.+++.|++|++||++.++
T Consensus 386 ~Sgs~D~-~IkvWdl~~~----------------~~c~~tl-~~h~-~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~ 444 (537)
T KOG0274|consen 386 LSGSLDT-TIKVWDLRTK----------------RKCIHTL-QGHT-SLVSSLLL--RDNFLVSSSADGTIKLWDAEEGE 444 (537)
T ss_pred Eeeeecc-ceEeecCCch----------------hhhhhhh-cCCc-cccccccc--ccceeEeccccccEEEeecccCc
Confidence 9999975 5999999631 0244444 3443 45666554 67899999999999999999998
Q ss_pred Ccccccc
Q 002778 353 GDSGFQT 359 (882)
Q Consensus 353 g~~~l~~ 359 (882)
....+.+
T Consensus 445 ~~~~~~~ 451 (537)
T KOG0274|consen 445 CLRTLEG 451 (537)
T ss_pred eeeeecc
Confidence 8888777
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-14 Score=157.46 Aligned_cols=188 Identities=15% Similarity=0.185 Sum_probs=142.3
Q ss_pred cCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC--CEEEEEE-CCeEEEEECCCCceeEEEecCCCcccCCCCccccccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 134 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~--rlLAV~~-d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~ 134 (882)
-+++|+.|++.+|-++.++. |+..|+.|+.+. .++|++. +.++++|-+.+++++..++.|..|.
T Consensus 213 rD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~v------------ 280 (406)
T KOG0295|consen 213 RDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPV------------ 280 (406)
T ss_pred cccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccce------------
Confidence 56999999999999999998 888999999987 4667654 6789999999998877777665531
Q ss_pred ceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCC
Q 002778 135 YGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS 214 (882)
Q Consensus 135 ~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~ 214 (882)
..+++.|. .+|++ ++-.+. ..
T Consensus 281 -Eci~wap~-~~~~~--------------------i~~at~-----------------------------------~~-- 301 (406)
T KOG0295|consen 281 -ECIAWAPE-SSYPS--------------------ISEATG-----------------------------------ST-- 301 (406)
T ss_pred -EEEEeccc-ccCcc--------------------hhhccC-----------------------------------CC--
Confidence 23343221 01111 000000 00
Q ss_pred CCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccC
Q 002778 215 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS 294 (882)
Q Consensus 215 s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~ 294 (882)
+ ++.++. .++.|++|++||+.++.++-+|.+|...|..++|+|-|++|+++..|++ +||||++.
T Consensus 302 -----~-~~~~l~----s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDkt-lrvwdl~~----- 365 (406)
T KOG0295|consen 302 -----N-GGQVLG----SGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKT-LRVWDLKN----- 365 (406)
T ss_pred -----C-CccEEE----eecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCc-EEEEEecc-----
Confidence 0 011111 4688999999999999999999999999999999999999999998765 99999964
Q ss_pred CCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEE
Q 002778 295 GSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV 347 (882)
Q Consensus 295 ~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWd 347 (882)
+ +++..+. .+..-+.++.|..+.-++++|+-|.|+++|-
T Consensus 366 --~----------~cmk~~~--ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 366 --L----------QCMKTLE--AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred --c----------eeeeccC--CCcceeEEEecCCCCceEEeccccceeeeee
Confidence 2 4555554 2334689999999999999999999999995
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.8e-14 Score=163.11 Aligned_cols=103 Identities=13% Similarity=0.028 Sum_probs=79.2
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEE
Q 002778 233 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 312 (882)
Q Consensus 233 gs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~ 312 (882)
++.||+|+|||+.+++.+..+. |...|.+++|+|+|++||+++.|+ .|+|||+.. + ..+..
T Consensus 144 gS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~-~IrIwD~Rs-------g----------~~i~t 204 (568)
T PTZ00420 144 SGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGK-HMHIIDPRK-------Q----------EIASS 204 (568)
T ss_pred EeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCC-EEEEEECCC-------C----------cEEEE
Confidence 4678999999999998777776 668899999999999999999865 599999964 2 24444
Q ss_pred EEecccCC----cEEEEEEccCCCEEEEEeCCC----eEEEEECCCCCCcc
Q 002778 313 LHRGITSA----TIQDICFSHYSQWIAIVSSKG----TCHVFVLSPFGGDS 355 (882)
Q Consensus 313 L~RG~t~a----~I~sLaFSPDg~~LAsgS~DG----TVhIWdI~~~gg~~ 355 (882)
+ .||... .++...|++|+.+|++++.++ +|+|||+...+.+.
T Consensus 205 l-~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl 254 (568)
T PTZ00420 205 F-HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSAL 254 (568)
T ss_pred E-ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCce
Confidence 4 244332 245556889999999988764 89999998655444
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.4e-14 Score=164.58 Aligned_cols=265 Identities=14% Similarity=0.128 Sum_probs=176.6
Q ss_pred cccCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC---CEEEEEE-CCeEEEEECCCCceeEEEecCCCcccCCCCcccc
Q 002778 57 VNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP---RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGI 131 (882)
Q Consensus 57 ~~sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~---rlLAV~~-d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~ 131 (882)
+..+..+.|||..+.+.++.+- +.+.|++++|-+ +.|||+. ...+++|++.|+.+. .+.+|..-
T Consensus 299 vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~---------- 367 (775)
T KOG0319|consen 299 VTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEA---------- 367 (775)
T ss_pred EEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhh----------
Confidence 3577899999999999998885 889999999976 7888876 467999999999885 55666551
Q ss_pred cccceeeE-E-cCcEEEEeC--CCeEecc----CCCC-CCccCCC---CCCCCCcCCCCCccEEEeeccchhhhhccccc
Q 002778 132 NVGYGPMA-V-GPRWLAYAS--NTLLLSN----SGRL-SPQNLTP---SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSK 199 (882)
Q Consensus 132 ~~~~g~lA-l-spR~LAyss--~~v~lwd----tG~v-s~q~lt~---~~vs~s~SP~~GslVA~~A~essk~la~Glik 199 (882)
.-.++ + +..|||..+ +++++|. .+.. ..+--++ ..-.+..+-.+-+..+....|...++.. +.+
T Consensus 368 ---vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~-l~~ 443 (775)
T KOG0319|consen 368 ---VLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWD-LPK 443 (775)
T ss_pred ---eeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEec-CCC
Confidence 11222 1 225888875 4789993 1111 0000000 0000000001111122222111111100 000
Q ss_pred --------cccccccccCCC--CCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCC
Q 002778 200 --------TLSKYCQELLPD--GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSG 269 (882)
Q Consensus 200 --------tLs~~~~~l~pd--gs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdG 269 (882)
.|.-.......+ -+.+++++| -+.++ +|++|.+.+||++.....+.+|.+|+..|+++.|+|..
T Consensus 444 s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~n--dkLiA----T~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~d 517 (775)
T KOG0319|consen 444 SKETAFPIVLTCRYTERAHDKDINCVAIAPN--DKLIA----TGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKND 517 (775)
T ss_pred cccccccceehhhHHHHhhcccccceEecCC--CceEE----ecccccceeeecccCceEEEEeeCCccceEEEEecccc
Confidence 000000000111 122333333 34433 78999999999999999999999999999999999999
Q ss_pred CEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECC
Q 002778 270 TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 349 (882)
Q Consensus 270 tlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~ 349 (882)
++|||+|.|.| |+||.+.+. -++.+|. ||+. .|.-.+|-.+|+.|++++.||-++||++.
T Consensus 518 q~laT~SgD~T-vKIW~is~f-----------------SClkT~e-GH~~-aVlra~F~~~~~qliS~~adGliKlWnik 577 (775)
T KOG0319|consen 518 QLLATCSGDKT-VKIWSISTF-----------------SCLKTFE-GHTS-AVLRASFIRNGKQLISAGADGLIKLWNIK 577 (775)
T ss_pred ceeEeccCCce-EEEEEeccc-----------------eeeeeec-Cccc-eeEeeeeeeCCcEEEeccCCCcEEEEecc
Confidence 99999999665 999999652 3677774 7775 58889999999999999999999999999
Q ss_pred CCCCccccccccC
Q 002778 350 PFGGDSGFQTLSS 362 (882)
Q Consensus 350 ~~gg~~~l~~H~~ 362 (882)
+..+..++..|+.
T Consensus 578 t~eC~~tlD~H~D 590 (775)
T KOG0319|consen 578 TNECEMTLDAHND 590 (775)
T ss_pred chhhhhhhhhccc
Confidence 9999999999974
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.9e-14 Score=150.37 Aligned_cols=211 Identities=19% Similarity=0.253 Sum_probs=137.2
Q ss_pred CEEEE-EECCeEEEEECCCCceeEEEecCCCcccCCCCcccccccceeeEEcC--cEEEEeCC-CeEeccCCCCCCccCC
Q 002778 91 RIVAV-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASN-TLLLSNSGRLSPQNLT 166 (882)
Q Consensus 91 rlLAV-~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g~lAlsp--R~LAyss~-~v~lwdtG~vs~q~lt 166 (882)
-+||+ +.|.+|++|.+.||.|.+++.- +.. ..+.+.+.| +.||.+.+ .+++.|...-.
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh-~ds------------qVNrLeiTpdk~~LAaa~~qhvRlyD~~S~n----- 72 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQH-PDS------------QVNRLEITPDKKDLAAAGNQHVRLYDLNSNN----- 72 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEec-Ccc------------ceeeEEEcCCcchhhhccCCeeEEEEccCCC-----
Confidence 35555 4588999999999999999963 331 135677777 88887776 46666531110
Q ss_pred CCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCC
Q 002778 167 PSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT 246 (882)
Q Consensus 167 ~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s 246 (882)
...++.|.... ++..++.|..+++... +|+.||+|+|||+.+
T Consensus 73 ------------p~Pv~t~e~h~----------------------kNVtaVgF~~dgrWMy----TgseDgt~kIWdlR~ 114 (311)
T KOG0315|consen 73 ------------PNPVATFEGHT----------------------KNVTAVGFQCDGRWMY----TGSEDGTVKIWDLRS 114 (311)
T ss_pred ------------CCceeEEeccC----------------------CceEEEEEeecCeEEE----ecCCCceEEEEeccC
Confidence 11222222110 1112223333444433 678999999999999
Q ss_pred CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCC-cccC---------------CCCCC---------cc
Q 002778 247 RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPS-CMRS---------------GSGNH---------KY 301 (882)
Q Consensus 247 ~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~-~~~~---------------~sG~~---------~~ 301 (882)
..+.+.| .|.+||+++..+|+-+-|.++...|+ |+|||+... +..- -.|.. -+
T Consensus 115 ~~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~-irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cy 192 (311)
T KOG0315|consen 115 LSCQRNY-QHNSPVNTVVLHPNQTELISGDQSGN-IRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCY 192 (311)
T ss_pred cccchhc-cCCCCcceEEecCCcceEEeecCCCc-EEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEE
Confidence 6655555 47799999999999999999999886 999998754 2110 00000 00
Q ss_pred cc-------CCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCC-CCcccccccc
Q 002778 302 DW-------NSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF-GGDSGFQTLS 361 (882)
Q Consensus 302 d~-------sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~-gg~~~l~~H~ 361 (882)
-| .+....+.+++ . +..-|..+-||||+++||++|+|.||+||+++.+ +.+..+.+|.
T Consensus 193 vW~l~~~~~~s~l~P~~k~~-a-h~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~ 258 (311)
T KOG0315|consen 193 VWRLLNHQTASELEPVHKFQ-A-HNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQ 258 (311)
T ss_pred EEEccCCCccccceEhhhee-c-ccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCC
Confidence 00 01112222332 1 2335788899999999999999999999999988 7777788885
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.6e-15 Score=158.63 Aligned_cols=182 Identities=18% Similarity=0.151 Sum_probs=142.7
Q ss_pred EEEE-cCCcEEEEEEcC--CEEEEEE-CCeEEEEECCCCceeEEEecCCCcccCCCCcccccccceeeEEcCcEEEEeCC
Q 002778 75 HVLR-FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASN 150 (882)
Q Consensus 75 ~tLk-f~s~V~sV~~S~--rlLAV~~-d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g~lAlspR~LAyss~ 150 (882)
+.++ |-++|++|++.| ..++.+. |.+|+|||+.|+++..+|.+|-.. ... +|++..
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~-------------vr~-------vavS~r 204 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIET-------------VRG-------VAVSKR 204 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhhe-------------eee-------eeeccc
Confidence 3444 889999999998 6788765 678999999999999998766431 122 333221
Q ss_pred CeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCCCCccCCCccccccccc
Q 002778 151 TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAG 230 (882)
Q Consensus 151 ~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~ 230 (882)
.+.+ +
T Consensus 205 HpYl-------------------------------------------------------------------------F-- 209 (460)
T KOG0285|consen 205 HPYL-------------------------------------------------------------------------F-- 209 (460)
T ss_pred CceE-------------------------------------------------------------------------E--
Confidence 1110 0
Q ss_pred cccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEE
Q 002778 231 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 310 (882)
Q Consensus 231 ~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l 310 (882)
++..|+.|+.||++..+.+....+|-+.|.+|+..|.-..|+||+.| .+|||||+.+- ..+
T Consensus 210 -s~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grD-st~RvWDiRtr-----------------~~V 270 (460)
T KOG0285|consen 210 -SAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRD-STIRVWDIRTR-----------------ASV 270 (460)
T ss_pred -EecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCc-ceEEEeeeccc-----------------ceE
Confidence 23568999999999999999999999999999999999999999995 56999999752 245
Q ss_pred EEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccccccccCCCCCCcccCC
Q 002778 311 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPV 372 (882)
Q Consensus 311 ~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~H~~~~~~~~~sp~ 372 (882)
..| .||++ .|.+|.|.|-.--+.++|.|+||++||+..+....++..|...+-+..++|-
T Consensus 271 ~~l-~GH~~-~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~ 330 (460)
T KOG0285|consen 271 HVL-SGHTN-PVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPK 330 (460)
T ss_pred EEe-cCCCC-cceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCc
Confidence 555 47664 6999999998888999999999999999988888888888766666666653
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.9e-14 Score=149.36 Aligned_cols=237 Identities=16% Similarity=0.152 Sum_probs=159.0
Q ss_pred cccccCccCCCCCccc---ccCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC---CEEEEEECCeEEEEECCCCceeEE
Q 002778 42 GGVRDGMMDSQSGNCV---NSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP---RIVAVGLATQIYCFDALTLENKFS 114 (882)
Q Consensus 42 ~~v~~~~~~~~~~~~~---~sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~---rlLAV~~d~qI~IWDa~T~e~l~t 114 (882)
|+|+-...+. .||+. .++++||+|+...|.+++++. |...|++++.+. ++.+.|.|..|++||+.||+.++.
T Consensus 18 gaV~avryN~-dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr 96 (307)
T KOG0316|consen 18 GAVRAVRYNV-DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRR 96 (307)
T ss_pred cceEEEEEcc-CCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeee
Confidence 4454444432 25554 478999999999999999998 778899988754 444456688899999999999999
Q ss_pred EecCCCcccCCCCcccccccceeeEEcC--cEEEEe--CCCeEeccCCCCC---CccCCCCCCCCCcCCCCCccEEEeec
Q 002778 115 VLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYA--SNTLLLSNSGRLS---PQNLTPSGVSPSTSPGGSSLVARYAM 187 (882)
Q Consensus 115 L~t~p~p~~~~~~~~g~~~~~g~lAlsp--R~LAys--s~~v~lwdtG~vs---~q~lt~~~vs~s~SP~~GslVA~~A~ 187 (882)
+.+|... .+.+.|.- ..++.. +.++++|+.--.+ .|.+.. ++
T Consensus 97 ~rgH~aq-------------VNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQilde------------------a~ 145 (307)
T KOG0316|consen 97 FRGHLAQ-------------VNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDE------------------AK 145 (307)
T ss_pred cccccce-------------eeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhh------------------hc
Confidence 9988651 35566654 344433 3578999852111 111100 00
Q ss_pred cchhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECC
Q 002778 188 EHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP 267 (882)
Q Consensus 188 essk~la~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSP 267 (882)
|.... -.+.++ ..+ .|+.||+++.||+..|+.....-+| ||++++|++
T Consensus 146 D~V~S------i~v~~h---------------------eIv---aGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~ 193 (307)
T KOG0316|consen 146 DGVSS------IDVAEH---------------------EIV---AGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSK 193 (307)
T ss_pred CceeE------EEeccc---------------------EEE---eeccCCcEEEEEeecceeehhhcCC--cceeEEecC
Confidence 00000 000000 001 4678999999999999876665554 999999999
Q ss_pred CCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCC-cEEEEEEccCCCEEEEEeCCCeEEEE
Q 002778 268 SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA-TIQDICFSHYSQWIAIVSSKGTCHVF 346 (882)
Q Consensus 268 dGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a-~I~sLaFSPDg~~LAsgS~DGTVhIW 346 (882)
||+.+..++-++ ++|+-|-.+ | +.|.. ..|+.+. -=.+.+|+.-...+++||.||.|.+|
T Consensus 194 d~nc~La~~l~s-tlrLlDk~t-------G----------klL~s-YkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~w 254 (307)
T KOG0316|consen 194 DGNCSLASSLDS-TLRLLDKET-------G----------KLLKS-YKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFW 254 (307)
T ss_pred CCCEEEEeeccc-eeeecccch-------h----------HHHHH-hcccccceeeeeeeecccceeEEeccCCceEEEE
Confidence 999888888855 599999754 3 22222 2355443 12456788888999999999999999
Q ss_pred ECCCCCCcccccccc
Q 002778 347 VLSPFGGDSGFQTLS 361 (882)
Q Consensus 347 dI~~~gg~~~l~~H~ 361 (882)
|+........+..|.
T Consensus 255 dLvd~~~~sk~~~~~ 269 (307)
T KOG0316|consen 255 DLVDETQISKLSVVS 269 (307)
T ss_pred EeccceeeeeeccCC
Confidence 998776665555553
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-14 Score=168.71 Aligned_cols=215 Identities=12% Similarity=0.168 Sum_probs=157.4
Q ss_pred CCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC--CEEEEEE-CCeEEEEECCCCceeEEEecCCCcccCCCCcccccccc
Q 002778 60 PTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGY 135 (882)
Q Consensus 60 p~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~--rlLAV~~-d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~ 135 (882)
.++|++||-+=|.+++.+. |.++|++|.|.+ -++++|. |-.|+||+..+.+++++|.+|-.= .
T Consensus 30 sG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDY-------------V 96 (1202)
T KOG0292|consen 30 SGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDY-------------V 96 (1202)
T ss_pred CceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccce-------------e
Confidence 3679999999999999986 999999999987 3556655 457999999999999999887540 0
Q ss_pred eeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCCC
Q 002778 136 GPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS 215 (882)
Q Consensus 136 g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~s 215 (882)
|.+.|...-+
T Consensus 97 -------Rt~~FHheyP--------------------------------------------------------------- 106 (1202)
T KOG0292|consen 97 -------RTVFFHHEYP--------------------------------------------------------------- 106 (1202)
T ss_pred -------EEeeccCCCc---------------------------------------------------------------
Confidence 1222221100
Q ss_pred CccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCC
Q 002778 216 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSG 295 (882)
Q Consensus 216 ~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~ 295 (882)
|-. +++.|.+|+||+-.++++++.+.+|...|.|.+|.|...++++||-|- +|||||+.--.-++.
T Consensus 107 -------WIl------SASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQ-TVRVWDisGLRkk~~ 172 (1202)
T KOG0292|consen 107 -------WIL------SASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQ-TVRVWDISGLRKKNK 172 (1202)
T ss_pred -------eEE------EccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccc-eEEEEeecchhccCC
Confidence 000 346789999999999999999999999999999999999999999965 599999852110010
Q ss_pred C-C--------C-CccccCC-cccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCC--CccccccccC
Q 002778 296 S-G--------N-HKYDWNS-SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG--GDSGFQTLSS 362 (882)
Q Consensus 296 s-G--------~-~~~d~ss-s~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~g--g~~~l~~H~~ 362 (882)
. | . ...|.-+ ....+.-...||++. |.-+||.|.=-.|++|++|.-|++|.++..+ +.-+.++|..
T Consensus 173 ~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRG-VNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~n 251 (1202)
T KOG0292|consen 173 APGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRG-VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYN 251 (1202)
T ss_pred CCCCchhhhhccccchhhcCCcCeeeeeeecccccc-cceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccC
Confidence 0 0 0 0011111 111222233587764 8889999999999999999999999997654 3346799998
Q ss_pred CCCCCcccCC
Q 002778 363 QGGDPYLFPV 372 (882)
Q Consensus 363 ~~~~~~~sp~ 372 (882)
.|.+..++|.
T Consensus 252 nVssvlfhp~ 261 (1202)
T KOG0292|consen 252 NVSSVLFHPH 261 (1202)
T ss_pred CcceEEecCc
Confidence 8888777773
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.4e-13 Score=158.06 Aligned_cols=102 Identities=19% Similarity=0.220 Sum_probs=83.3
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEE
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~ 311 (882)
+++.||+|+|||+.+++.+..+.+|...|.+|+|+|+|.+|||++.||+ |+|||+.. + ..+.
T Consensus 143 Sgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~-IrIwD~rs-------g----------~~v~ 204 (493)
T PTZ00421 143 SAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKK-LNIIDPRD-------G----------TIVS 204 (493)
T ss_pred EEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCE-EEEEECCC-------C----------cEEE
Confidence 3467999999999999999999999999999999999999999999765 99999964 2 3455
Q ss_pred EEEecccCCcEEEEEEccCCCEEEEEe----CCCeEEEEECCCCC
Q 002778 312 KLHRGITSATIQDICFSHYSQWIAIVS----SKGTCHVFVLSPFG 352 (882)
Q Consensus 312 ~L~RG~t~a~I~sLaFSPDg~~LAsgS----~DGTVhIWdI~~~g 352 (882)
.+. ++....+..+.|.+++..|++++ .|++|+|||+....
T Consensus 205 tl~-~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 205 SVE-AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred EEe-cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 553 55444566788999988887654 47999999997654
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.7e-14 Score=161.80 Aligned_cols=236 Identities=16% Similarity=0.158 Sum_probs=164.5
Q ss_pred ccCCeEEEEECCCCeEEEEEEc-CCcEEEEEEc--CCEEEEEECC--eEEEEECCCCceeEEEecCCCcccCCCCccccc
Q 002778 58 NSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCS--PRIVAVGLAT--QIYCFDALTLENKFSVLTYPVPQLAGQGAVGIN 132 (882)
Q Consensus 58 ~sp~tVrlWDlkTG~~V~tLkf-~s~V~sV~~S--~rlLAV~~d~--qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~ 132 (882)
++.+...+|.+..-.+||.|.- ...|..+.+| ++.||++..+ |+-||+..+-.-+....+|-.
T Consensus 284 FssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~------------ 351 (893)
T KOG0291|consen 284 FSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSD------------ 351 (893)
T ss_pred ecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecccccc------------
Confidence 3567788999999999999984 4789999998 7999998765 899999876443333333332
Q ss_pred ccceeeEEcC--cEEEEeC--CCeEeccCCC-CCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccc
Q 002778 133 VGYGPMAVGP--RWLAYAS--NTLLLSNSGR-LSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQE 207 (882)
Q Consensus 133 ~~~g~lAlsp--R~LAyss--~~v~lwdtG~-vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~ 207 (882)
....++.+| .++|... .++++||+.. -+..+++. +.+|..
T Consensus 352 -~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFte--------Hts~Vt-------------------------- 396 (893)
T KOG0291|consen 352 -RITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTE--------HTSGVT-------------------------- 396 (893)
T ss_pred -ceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEecc--------CCCceE--------------------------
Confidence 246788888 5888764 4799998521 11111111 011111
Q ss_pred cCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCC-CCeEEEEECCCCCEEEEEEcCCCEEEEEe
Q 002778 208 LLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHT-SPISALCFDPSGTLLVTASVYGNNINIFR 286 (882)
Q Consensus 208 l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~-spIsaLaFSPdGtlLATAS~dGt~IrVWd 286 (882)
.+++...++++. +.+-||+|+.||+...+..++|.... -..++|+.+|+|.++..|+.|--.|.||+
T Consensus 397 --------~v~f~~~g~~ll----ssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS 464 (893)
T KOG0291|consen 397 --------AVQFTARGNVLL----SSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWS 464 (893)
T ss_pred --------EEEEEecCCEEE----EeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEE
Confidence 111111122211 45789999999999999999988643 34678999999999998888777799999
Q ss_pred cCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccccccccCCCCC
Q 002778 287 IMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGD 366 (882)
Q Consensus 287 i~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~H~~~~~~ 366 (882)
+++ | ++.....||. ++|.+|+|+|++..||++|-|.||+||++=...+.+.--.+.+.+.+
T Consensus 465 ~qT-------G-----------qllDiLsGHE-gPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~ 525 (893)
T KOG0291|consen 465 VQT-------G-----------QLLDILSGHE-GPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLA 525 (893)
T ss_pred eec-------C-----------eeeehhcCCC-CcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeE
Confidence 976 5 4555556875 58999999999999999999999999999665444433334444444
Q ss_pred CcccC
Q 002778 367 PYLFP 371 (882)
Q Consensus 367 ~~~sp 371 (882)
..+.|
T Consensus 526 vsfrP 530 (893)
T KOG0291|consen 526 VSFRP 530 (893)
T ss_pred EEEcC
Confidence 44444
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.8e-15 Score=158.50 Aligned_cols=253 Identities=16% Similarity=0.159 Sum_probs=167.2
Q ss_pred cCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC-CEEEEEECCeEEEEECCCCceeEEEecCCCcccCCCCcccccccce
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP-RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 136 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~-rlLAV~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g 136 (882)
.++.|+|||+.+.+++.+++ |.+.|++|+++. ..+.+|.|.+|+.|-+.. ..++++.+... +-|+ .
T Consensus 87 ~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~-~p~~tilg~s~-------~~gI----d 154 (433)
T KOG0268|consen 87 CDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDG-PPLHTILGKSV-------YLGI----D 154 (433)
T ss_pred cCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeeccC-Ccceeeecccc-------cccc----c
Confidence 47999999999999999999 778999999987 677788899999998764 46677764222 0000 0
Q ss_pred eeEEcCcEEEEeCCCeEeccCCCCCC-ccCCC--C-CCCCCcCCCCCccEEEeeccchhhhhcc-ccccccccccccCCC
Q 002778 137 PMAVGPRWLAYASNTLLLSNSGRLSP-QNLTP--S-GVSPSTSPGGSSLVARYAMEHSKQFAAG-LSKTLSKYCQELLPD 211 (882)
Q Consensus 137 ~lAlspR~LAyss~~v~lwdtG~vs~-q~lt~--~-~vs~s~SP~~GslVA~~A~essk~la~G-liktLs~~~~~l~pd 211 (882)
-+- .....|..+..+.||+-.+..| +.++- + ..+..+.|...+++|..+.|++.-|-.. .-+-+.+....
T Consensus 155 h~~-~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~---- 229 (433)
T KOG0268|consen 155 HHR-KNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT---- 229 (433)
T ss_pred ccc-ccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeee----
Confidence 000 0123456677889998644433 22211 1 2234455666677777666654322110 00011111111
Q ss_pred CCCCCccCCCccccccccccccCCCceEEEEECCCC-cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCC
Q 002778 212 GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPS 290 (882)
Q Consensus 212 gs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~-~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~ 290 (882)
.-...++.|| .. +....|+.|..+..+|+... +.+...+.|.++|..+.|||.|+-+||||.|. .||||.+..
T Consensus 230 mRTN~IswnP-ea---fnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDk-sIRIf~~~~- 303 (433)
T KOG0268|consen 230 MRTNTICWNP-EA---FNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDK-SIRIFPVNH- 303 (433)
T ss_pred ccccceecCc-cc---cceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccc-eEEEeecCC-
Confidence 1112334444 11 22225789999999999876 46778899999999999999999999999954 599999964
Q ss_pred cccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 291 CMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 291 ~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
| ..+-+|-.+|- ..|.+|.||.|++||.+||+|+.|+||.-...
T Consensus 304 ------~--------~SRdiYhtkRM---q~V~~Vk~S~Dskyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 304 ------G--------HSRDIYHTKRM---QHVFCVKYSMDSKYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred ------C--------cchhhhhHhhh---heeeEEEEeccccEEEecCCCcceeeeecchh
Confidence 1 11234433332 35999999999999999999999999987653
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.2e-15 Score=159.69 Aligned_cols=217 Identities=15% Similarity=0.131 Sum_probs=150.9
Q ss_pred cCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcCCEEEEEE-CCeEEEEECCCCc---eeEEEecCCCcccCCCCcccccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSPRIVAVGL-ATQIYCFDALTLE---NKFSVLTYPVPQLAGQGAVGINV 133 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~rlLAV~~-d~qI~IWDa~T~e---~l~tL~t~p~p~~~~~~~~g~~~ 133 (882)
++.||++||..||+++.++- |-.+|..++|+..+++.+. |..|.+||+.... +.+.|.+|..
T Consensus 255 SDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrA------------- 321 (499)
T KOG0281|consen 255 SDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA------------- 321 (499)
T ss_pred CCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhh-------------
Confidence 68999999999999999986 6689999999998888776 6789999987644 2233444443
Q ss_pred cceeeEEcCcEEEEeC--CCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCC
Q 002778 134 GYGPMAVGPRWLAYAS--NTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPD 211 (882)
Q Consensus 134 ~~g~lAlspR~LAyss--~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pd 211 (882)
..+.+.++.+++..++ .++++|++... ..| .++.++...+...
T Consensus 322 aVNvVdfd~kyIVsASgDRTikvW~~st~-------------------efv----------------Rtl~gHkRGIACl 366 (499)
T KOG0281|consen 322 AVNVVDFDDKYIVSASGDRTIKVWSTSTC-------------------EFV----------------RTLNGHKRGIACL 366 (499)
T ss_pred heeeeccccceEEEecCCceEEEEeccce-------------------eee----------------hhhhcccccceeh
Confidence 2467788888887765 47899985211 111 1111111111000
Q ss_pred CCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCc
Q 002778 212 GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSC 291 (882)
Q Consensus 212 gs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~ 291 (882)
.. -++... +|+.|.+|++||+..|+++..+.+|..-|.++.|+. +.+++|..||+ |+|||+....
T Consensus 367 ------QY--r~rlvV----SGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~--krIVSGaYDGk-ikvWdl~aal 431 (499)
T KOG0281|consen 367 ------QY--RDRLVV----SGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN--KRIVSGAYDGK-IKVWDLQAAL 431 (499)
T ss_pred ------hc--cCeEEE----ecCCCceEEEEeccccHHHHHHhchHHhhhheeecC--ceeeeccccce-EEEEeccccc
Confidence 00 011111 567899999999999999999999999999999964 68999999886 9999996421
Q ss_pred -ccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 292 -MRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 292 -~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
.+.. ++--++..+-+ +...|..+.| |...|+++|.|.||-|||+..+
T Consensus 432 dpra~---------~~~~Cl~~lv~--hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 432 DPRAP---------ASTLCLRTLVE--HSGRVFRLQF--DEFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred CCccc---------ccchHHHhhhh--ccceeEEEee--cceEEEeccCCCeEEEEEcCCC
Confidence 0000 01123334433 2347888998 6688999999999999998653
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-14 Score=158.53 Aligned_cols=222 Identities=15% Similarity=0.170 Sum_probs=149.3
Q ss_pred ccccccccCccCCCCCccc--ccCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcCCE--EEEE-ECCeEEEEECCCCcee
Q 002778 39 SHLGGVRDGMMDSQSGNCV--NSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSPRI--VAVG-LATQIYCFDALTLENK 112 (882)
Q Consensus 39 ~~~~~v~~~~~~~~~~~~~--~sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~rl--LAV~-~d~qI~IWDa~T~e~l 112 (882)
|.+|++..--.++.+..++ ..++.+++|++..++..++|. |.+.|.++.|.... ++.+ .|.+|++||+....|.
T Consensus 217 Gs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~ 296 (459)
T KOG0288|consen 217 GSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCS 296 (459)
T ss_pred ccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhhee
Confidence 3344443333333333333 356889999999999999998 88999999986522 3333 3667999999887776
Q ss_pred EEEecCCCcccCCCCcccccccceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhh
Q 002778 113 FSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQ 192 (882)
Q Consensus 113 ~tL~t~p~p~~~~~~~~g~~~~~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~ 192 (882)
+++.--.. -+.+.+ .. ..
T Consensus 297 kt~l~~S~--------------cnDI~~-------~~------------------------------~~----------- 314 (459)
T KOG0288|consen 297 KTVLPGSQ--------------CNDIVC-------SI------------------------------SD----------- 314 (459)
T ss_pred cccccccc--------------ccceEe-------cc------------------------------ee-----------
Confidence 65431000 001110 00 00
Q ss_pred hhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEE
Q 002778 193 FAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLL 272 (882)
Q Consensus 193 la~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlL 272 (882)
+ .+++.|++|+.||+.+..++.....|. .|++|..+++|..|
T Consensus 315 -----------------------------------~--~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~l 356 (459)
T KOG0288|consen 315 -----------------------------------V--ISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLEL 356 (459)
T ss_pred -----------------------------------e--eecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEE
Confidence 0 045789999999999999999998885 99999999999999
Q ss_pred EEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecc-cCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 273 VTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI-TSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 273 ATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~-t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
.+.+.|++ ++++|+... ...+.+... |. +...++-+.||||+.|+|+||.||.|+||++.+.
T Consensus 357 LsssRDdt-l~viDlRt~---------------eI~~~~sA~-g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg 419 (459)
T KOG0288|consen 357 LSSSRDDT-LKVIDLRTK---------------EIRQTFSAE-GFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG 419 (459)
T ss_pred eeecCCCc-eeeeecccc---------------cEEEEeecc-ccccccccceeEECCCCceeeeccCCCcEEEEEccCc
Confidence 99988765 899999642 113333322 22 2235788999999999999999999999999987
Q ss_pred CCccccccccCCCCCCcccCCCCCCcccCCCC
Q 002778 352 GGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSG 383 (882)
Q Consensus 352 gg~~~l~~H~~~~~~~~~sp~~~lpw~~~s~~ 383 (882)
+.+..+....+. ..+.++.|.+....
T Consensus 420 KlE~~l~~s~s~------~aI~s~~W~~sG~~ 445 (459)
T KOG0288|consen 420 KLEKVLSLSTSN------AAITSLSWNPSGSG 445 (459)
T ss_pred eEEEEeccCCCC------cceEEEEEcCCCch
Confidence 766655433211 03445566554443
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.8e-13 Score=156.11 Aligned_cols=199 Identities=12% Similarity=0.197 Sum_probs=132.7
Q ss_pred ccccccccCccCCCCCccc---ccCCeEEEEECCCCe--------EEEEEE-cCCcEEEEEEcC---CEEEE-EECCeEE
Q 002778 39 SHLGGVRDGMMDSQSGNCV---NSPTAVRFYSFQSHC--------YEHVLR-FRSSVCMVRCSP---RIVAV-GLATQIY 102 (882)
Q Consensus 39 ~~~~~v~~~~~~~~~~~~~---~sp~tVrlWDlkTG~--------~V~tLk-f~s~V~sV~~S~---rlLAV-~~d~qI~ 102 (882)
+|.++|.+-...+.+++.+ ..+++|+|||+.++. .+..+. |...|.+|+|++ .+|++ +.|+.|+
T Consensus 72 gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIr 151 (568)
T PTZ00420 72 GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVN 151 (568)
T ss_pred CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEE
Confidence 4556665555554445544 357999999998753 234555 778899999997 24555 4578999
Q ss_pred EEECCCCceeEEEecCCCcccCCCCcccccccceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccE
Q 002778 103 CFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLV 182 (882)
Q Consensus 103 IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslV 182 (882)
|||+.+++.+.++. ++.. ... ++|..+ |.++
T Consensus 152 IWDl~tg~~~~~i~-~~~~-------------V~S-------lswspd----------------------------G~lL 182 (568)
T PTZ00420 152 IWDIENEKRAFQIN-MPKK-------------LSS-------LKWNIK----------------------------GNLL 182 (568)
T ss_pred EEECCCCcEEEEEe-cCCc-------------EEE-------EEECCC----------------------------CCEE
Confidence 99999988776663 2220 112 222211 1111
Q ss_pred EEeeccchhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEE
Q 002778 183 ARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISA 262 (882)
Q Consensus 183 A~~A~essk~la~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsa 262 (882)
+ +++.|+.|+|||+.+++.+.++.+|.+.+.+
T Consensus 183 --------------------------------------------a----t~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s 214 (568)
T PTZ00420 183 --------------------------------------------S----GTCVGKHMHIIDPRKQEIASSFHIHDGGKNT 214 (568)
T ss_pred --------------------------------------------E----EEecCCEEEEEECCCCcEEEEEecccCCcee
Confidence 0 2346899999999999999999999886543
Q ss_pred -----EEECCCCCEEEEEEcCC---CEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEE
Q 002778 263 -----LCFDPSGTLLVTASVYG---NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI 334 (882)
Q Consensus 263 -----LaFSPdGtlLATAS~dG---t~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~L 334 (882)
..|++++.+|+|++.++ +.|+|||+... + ..+..+.-......+...-++++|.++
T Consensus 215 ~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~------~----------~pl~~~~ld~~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 215 KNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNT------T----------SALVTMSIDNASAPLIPHYDESTGLIY 278 (568)
T ss_pred EEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCC------C----------CceEEEEecCCccceEEeeeCCCCCEE
Confidence 34678999999988765 36999999631 1 123332211222344555557779999
Q ss_pred EEEeCCCeEEEEECCC
Q 002778 335 AIVSSKGTCHVFVLSP 350 (882)
Q Consensus 335 AsgS~DGTVhIWdI~~ 350 (882)
++|+.|++|++|++..
T Consensus 279 lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSL 294 (568)
T ss_pred EEEECCCeEEEEEccC
Confidence 9999999999999975
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.1e-12 Score=134.77 Aligned_cols=259 Identities=14% Similarity=0.085 Sum_probs=149.8
Q ss_pred cCCeEEEEECCCCeEEEEEEcCCcEEEEEEcC--CEE-EEE-ECCeEEEEECCCCceeEEEecCCCcccCCCCccccccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIV-AVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 134 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLkf~s~V~sV~~S~--rlL-AV~-~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~ 134 (882)
.+++|++||+.+++.+.++.....+..+++++ +.| +++ .++.|++||+.+++.+..+..+..+
T Consensus 9 ~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~------------- 75 (300)
T TIGR03866 9 KDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDP------------- 75 (300)
T ss_pred CCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCc-------------
Confidence 36789999999999999998666678888876 455 343 3578999999999877766433221
Q ss_pred ceeeEEcC--cEEEEe---CCCeEeccCCCCC-CccCCC--CCCCCCcCCCCCccEEEeeccchhhhhcccccccccccc
Q 002778 135 YGPMAVGP--RWLAYA---SNTLLLSNSGRLS-PQNLTP--SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQ 206 (882)
Q Consensus 135 ~g~lAlsp--R~LAys---s~~v~lwdtG~vs-~q~lt~--~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~ 206 (882)
..++++| +.|+.. +..+.+|+..... ...+.. .......+|++..++ ....+..... .+..-++...
T Consensus 76 -~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~-~~~~~~~~~~---~~d~~~~~~~ 150 (300)
T TIGR03866 76 -ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVV-NTSETTNMAH---FIDTKTYEIV 150 (300)
T ss_pred -cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEE-EEecCCCeEE---EEeCCCCeEE
Confidence 2456666 445433 2468888853211 111111 011223345443332 2221110000 0000000000
Q ss_pred -ccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCC-----C--CeEEEEECCCCCEEEEEEcC
Q 002778 207 -ELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHT-----S--PISALCFDPSGTLLVTASVY 278 (882)
Q Consensus 207 -~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~-----s--pIsaLaFSPdGtlLATAS~d 278 (882)
.+........+.++++++.+.+ ++..+|.|.+||+.+++.+..+..+. . ....++|+|+|++++.+...
T Consensus 151 ~~~~~~~~~~~~~~s~dg~~l~~---~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~ 227 (300)
T TIGR03866 151 DNVLVDQRPRFAEFTADGKELWV---SSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGP 227 (300)
T ss_pred EEEEcCCCccEEEECCCCCEEEE---EcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCC
Confidence 0001111112334445554432 23568999999999998877665332 1 12468999999986655433
Q ss_pred CCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEE-eCCCeEEEEECCCCCCcccc
Q 002778 279 GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV-SSKGTCHVFVLSPFGGDSGF 357 (882)
Q Consensus 279 Gt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsg-S~DGTVhIWdI~~~gg~~~l 357 (882)
...|.|||+.. + ..+..+..+ ..+.+++|+|||++|+++ ..+|+|+|||+........+
T Consensus 228 ~~~i~v~d~~~-------~----------~~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~ 287 (300)
T TIGR03866 228 ANRVAVVDAKT-------Y----------EVLDYLLVG---QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSI 287 (300)
T ss_pred CCeEEEEECCC-------C----------cEEEEEEeC---CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 34599999853 2 233333222 258899999999999886 46899999999876544444
Q ss_pred c
Q 002778 358 Q 358 (882)
Q Consensus 358 ~ 358 (882)
+
T Consensus 288 ~ 288 (300)
T TIGR03866 288 K 288 (300)
T ss_pred E
Confidence 3
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.5e-13 Score=140.69 Aligned_cols=247 Identities=17% Similarity=0.160 Sum_probs=150.2
Q ss_pred CCCCccccc------ccccCceEEEEecCCCCCCC-------CCccccccccc--ccCccCCCCCcccccCCeEEEEECC
Q 002778 5 PVKDDGCEG------FRKLHPFLLVVAGEDTNTLA-------PGQNRSHLGGV--RDGMMDSQSGNCVNSPTAVRFYSFQ 69 (882)
Q Consensus 5 p~~~~~~d~------f~~~~pll~vv~~d~~~~~~-------~~~~~~~~~~v--~~~~~~~~~~~~~~sp~tVrlWDlk 69 (882)
||.-.|+|+ |-..--||.-++-|.+...- .+--.||.|+| ++....+..=-.-..+.+++|||++
T Consensus 3 pi~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 3 PILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred ccccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence 455555543 44444555555555543211 01114677777 4444433321011368999999999
Q ss_pred CCeEEEEEEcCCcEEEEEEcC--CEEEEEECCe------EEEEECCCCc-------eeEEEecCCCcccCCCCccccccc
Q 002778 70 SHCYEHVLRFRSSVCMVRCSP--RIVAVGLATQ------IYCFDALTLE-------NKFSVLTYPVPQLAGQGAVGINVG 134 (882)
Q Consensus 70 TG~~V~tLkf~s~V~sV~~S~--rlLAV~~d~q------I~IWDa~T~e-------~l~tL~t~p~p~~~~~~~~g~~~~ 134 (882)
+|+++.+++++.+|+.+.|+. .+++++.+++ |.+||++... ..+.+.++..
T Consensus 83 tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~s-------------- 148 (327)
T KOG0643|consen 83 TGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDS-------------- 148 (327)
T ss_pred CCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCcc--------------
Confidence 999999999999999999986 5666666543 8888887432 1122211100
Q ss_pred ceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCC
Q 002778 135 YGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS 214 (882)
Q Consensus 135 ~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~ 214 (882)
.-+..+|.. .
T Consensus 149 --------------kit~a~Wg~-------------------l------------------------------------- 158 (327)
T KOG0643|consen 149 --------------KITSALWGP-------------------L------------------------------------- 158 (327)
T ss_pred --------------ceeeeeecc-------------------c-------------------------------------
Confidence 001122321 0
Q ss_pred CCccCCCccccccccccccCCCceEEEEECCCCc-EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCc--
Q 002778 215 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA-IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSC-- 291 (882)
Q Consensus 215 s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~-~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~-- 291 (882)
++.+. +++.+|.|.+||+.++. .+..-+-|...|+.|+|+||.++++|+|.| ++.++||+.+-.
T Consensus 159 --------~~~ii----~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~D-ttakl~D~~tl~v~ 225 (327)
T KOG0643|consen 159 --------GETII----AGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKD-TTAKLVDVRTLEVL 225 (327)
T ss_pred --------CCEEE----EecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccC-ccceeeeccceeeE
Confidence 01111 46789999999999985 456668899999999999999999999985 568999976421
Q ss_pred -------ccC-------------CCCCCccccCCcccEEEE-------------EE--ecccCCcEEEEEEccCCCEEEE
Q 002778 292 -------MRS-------------GSGNHKYDWNSSHVHLYK-------------LH--RGITSATIQDICFSHYSQWIAI 336 (882)
Q Consensus 292 -------~~~-------------~sG~~~~d~sss~~~l~~-------------L~--RG~t~a~I~sLaFSPDg~~LAs 336 (882)
..| +-|....|.+....+.-+ +. .||- .+|.+|||+|||+-.++
T Consensus 226 Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHF-GPINsvAfhPdGksYsS 304 (327)
T KOG0643|consen 226 KTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHF-GPINSVAFHPDGKSYSS 304 (327)
T ss_pred EEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccc-cCcceeEECCCCccccc
Confidence 011 112111111111100000 11 1332 47999999999999999
Q ss_pred EeCCCeEEEEECC
Q 002778 337 VSSKGTCHVFVLS 349 (882)
Q Consensus 337 gS~DGTVhIWdI~ 349 (882)
|+.||.|+|.-.+
T Consensus 305 GGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 305 GGEDGYVRLHHFD 317 (327)
T ss_pred CCCCceEEEEEec
Confidence 9999999987554
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.1e-14 Score=145.71 Aligned_cols=152 Identities=24% Similarity=0.355 Sum_probs=118.0
Q ss_pred ccccccccCccCCCCCcccc---cCCeEEEEECCCCeEEEEEEcCCcEEEEEEcC--CEEEEEECCeEEEEECCCCceeE
Q 002778 39 SHLGGVRDGMMDSQSGNCVN---SPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKF 113 (882)
Q Consensus 39 ~~~~~v~~~~~~~~~~~~~~---sp~tVrlWDlkTG~~V~tLkf~s~V~sV~~S~--rlLAV~~d~qI~IWDa~T~e~l~ 113 (882)
+|.|++|....+.. .+|+. .+++||+||.+||+.+++|.|++.|.++.++. ++|.++....|++||+.+++.++
T Consensus 141 ghtg~Ir~v~wc~e-D~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lK 219 (334)
T KOG0278|consen 141 GHTGGIRTVLWCHE-DKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLK 219 (334)
T ss_pred CCCCcceeEEEecc-CceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEecccccccee
Confidence 56677777666543 44553 46999999999999999999999999988875 89999998999999999999877
Q ss_pred EEecCCCcccCCCCcccccccceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhh
Q 002778 114 SVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQF 193 (882)
Q Consensus 114 tL~t~p~p~~~~~~~~g~~~~~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~l 193 (882)
...-.-+ +..+ +..|..+.+|
T Consensus 220 s~k~P~n------------------------V~SA------------------------SL~P~k~~fV----------- 240 (334)
T KOG0278|consen 220 SYKMPCN------------------------VESA------------------------SLHPKKEFFV----------- 240 (334)
T ss_pred eccCccc------------------------cccc------------------------cccCCCceEE-----------
Confidence 6542111 1100 0112221111
Q ss_pred hccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEe-ccCCCCeEEEEECCCCCEE
Q 002778 194 AAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF-KAHTSPISALCFDPSGTLL 272 (882)
Q Consensus 194 a~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f-~aH~spIsaLaFSPdGtlL 272 (882)
.|+.|+.+..||..++..+..+ ++|-+||.|+.|+|||.+-
T Consensus 241 --------------------------------------aGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~y 282 (334)
T KOG0278|consen 241 --------------------------------------AGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELY 282 (334)
T ss_pred --------------------------------------ecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCcee
Confidence 2467899999999999988776 8999999999999999999
Q ss_pred EEEEcCCCEEEEEecCC
Q 002778 273 VTASVYGNNINIFRIMP 289 (882)
Q Consensus 273 ATAS~dGt~IrVWdi~p 289 (882)
|++|.||+ ||||.+.+
T Consensus 283 AsGSEDGT-irlWQt~~ 298 (334)
T KOG0278|consen 283 ASGSEDGT-IRLWQTTP 298 (334)
T ss_pred eccCCCce-EEEEEecC
Confidence 99999987 99999976
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.3e-14 Score=156.20 Aligned_cols=206 Identities=17% Similarity=0.219 Sum_probs=146.7
Q ss_pred ccCCCceEEEEECCCC---------cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccc
Q 002778 232 DMDNAGIVVVKDFVTR---------AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYD 302 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~---------~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d 302 (882)
+|+.|..|+||-+... ..+..|..|+..|+++.|+|+|.+||||+.+| .|.+|.......... -+ ..+
T Consensus 31 T~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g-~v~lWk~~~~~~~~~-d~-e~~ 107 (434)
T KOG1009|consen 31 TAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGG-EVFLWKQGDVRIFDA-DT-EAD 107 (434)
T ss_pred cccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCc-eEEEEEecCcCCccc-cc-hhh
Confidence 5677889999998642 23567788999999999999999999999866 588998752100000 00 111
Q ss_pred cCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccccccccCCCCCCcccCCCCCCcccCCC
Q 002778 303 WNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPVLSLPWWCTSS 382 (882)
Q Consensus 303 ~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~H~~~~~~~~~sp~~~lpw~~~s~ 382 (882)
.....+.+.+..||+ ...|++++|+||++++++++.|.++++||+..+.-...+..|. +|++.+ +|++.+.
T Consensus 108 ~~ke~w~v~k~lr~h-~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~-----~yvqgv---awDpl~q 178 (434)
T KOG1009|consen 108 LNKEKWVVKKVLRGH-RDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHE-----HYVQGV---AWDPLNQ 178 (434)
T ss_pred hCccceEEEEEeccc-ccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccc-----ccccee---ecchhhh
Confidence 222346777777885 4689999999999999999999999999999877777777885 577776 8999999
Q ss_pred CcccccccCCCCCccccceeeeeccCccccccccccccccCCccccccceEEeeeccCccccccccccccCCcccEEEEc
Q 002778 383 GISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYT 462 (882)
Q Consensus 383 ~~~~Q~~~~~~~~~~ls~vsrIk~~~~gw~~~vs~~~s~at~~~~~ps~~va~~Fh~~~~~~~~~~~~~~~~~~~LlV~S 462 (882)
+...+..++.+--+.++...+|+.=.. .++-+-+- .--.+.+.-+||++ +++.|+|+|-++
T Consensus 179 yv~s~s~dr~~~~~~~~~~~~~~~~~~------~~m~~~~~---~~~e~~s~rLfhDe----------TlksFFrRlsfT 239 (434)
T KOG1009|consen 179 YVASKSSDRHPEGFSAKLKQVIKRHGL------DIMPAKAF---NEREGKSTRLFHDE----------TLKSFFRRLSFT 239 (434)
T ss_pred hhhhhccCcccceeeeeeeeeeeeeee------eEeeeccc---CCCCcceeeeeecC----------chhhhhhhcccC
Confidence 988887777554444444444443110 01100000 01113456699999 889999999999
Q ss_pred CCccEE
Q 002778 463 PSGYVV 468 (882)
Q Consensus 463 p~G~Li 468 (882)
|||.|+
T Consensus 240 PdG~ll 245 (434)
T KOG1009|consen 240 PDGSLL 245 (434)
T ss_pred CCCcEE
Confidence 999996
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.2e-13 Score=151.04 Aligned_cols=237 Identities=19% Similarity=0.206 Sum_probs=153.7
Q ss_pred cccCCeEEEEECCCCeEEEEEEc-CCcEEEEEEcC--CEEEEEE-CCeEEEEECCCCceeEEEec-CCCcccCCCCcccc
Q 002778 57 VNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLT-YPVPQLAGQGAVGI 131 (882)
Q Consensus 57 ~~sp~tVrlWDlkTG~~V~tLkf-~s~V~sV~~S~--rlLAV~~-d~qI~IWDa~T~e~l~tL~t-~p~p~~~~~~~~g~ 131 (882)
+.....|.+|+..+|+......+ ...|++|.+++ +.||||. ++.|+|||+.+.+.+.++.. |..
T Consensus 193 Valg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~----------- 261 (484)
T KOG0305|consen 193 VALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHAS----------- 261 (484)
T ss_pred EEecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCc-----------
Confidence 35667999999999997766666 78899999985 7999986 57899999999888888876 432
Q ss_pred cccceeeEEcCcEEEEeCC--CeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccC
Q 002778 132 NVGYGPMAVGPRWLAYASN--TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELL 209 (882)
Q Consensus 132 ~~~~g~lAlspR~LAyss~--~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~ 209 (882)
..+.+++....|...+. .+..++ .....++. .++.+|.++.
T Consensus 262 --rvg~laW~~~~lssGsr~~~I~~~d------------------------------vR~~~~~~----~~~~~H~qeV- 304 (484)
T KOG0305|consen 262 --RVGSLAWNSSVLSSGSRDGKILNHD------------------------------VRISQHVV----STLQGHRQEV- 304 (484)
T ss_pred --eeEEEeccCceEEEecCCCcEEEEE------------------------------Eecchhhh----hhhhccccee-
Confidence 13555554333322211 111111 11111111 1122233221
Q ss_pred CCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECC-CCCEEEEEE-cCCCEEEEEec
Q 002778 210 PDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP-SGTLLVTAS-VYGNNINIFRI 287 (882)
Q Consensus 210 pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSP-dGtlLATAS-~dGt~IrVWdi 287 (882)
.-+.-+++...++ +|+.|+.|.|||......+.++..|+..|-||+|+| ...+||||+ ..+..|++|++
T Consensus 305 -----CgLkws~d~~~lA----SGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~ 375 (484)
T KOG0305|consen 305 -----CGLKWSPDGNQLA----SGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNT 375 (484)
T ss_pred -----eeeEECCCCCeec----cCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEc
Confidence 0112233344433 678999999999988888999999999999999999 567999974 34567999998
Q ss_pred CCCcccC--CCCC--CccccCCc-------------ccEEEEE--------EecccCCcEEEEEEccCCCEEEEEeCCCe
Q 002778 288 MPSCMRS--GSGN--HKYDWNSS-------------HVHLYKL--------HRGITSATIQDICFSHYSQWIAIVSSKGT 342 (882)
Q Consensus 288 ~p~~~~~--~sG~--~~~d~sss-------------~~~l~~L--------~RG~t~a~I~sLaFSPDg~~LAsgS~DGT 342 (882)
....... -+|. -+.-|... ...+|+. .-||+ .+|..+++||||..|++++.|+|
T Consensus 376 ~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~-~RVl~la~SPdg~~i~t~a~DET 454 (484)
T KOG0305|consen 376 NTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHT-SRVLYLALSPDGETIVTGAADET 454 (484)
T ss_pred CCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCc-ceeEEEEECCCCCEEEEecccCc
Confidence 7532100 0010 01112111 1122222 23544 57999999999999999999999
Q ss_pred EEEEECCCC
Q 002778 343 CHVFVLSPF 351 (882)
Q Consensus 343 VhIWdI~~~ 351 (882)
+++|++-+.
T Consensus 455 lrfw~~f~~ 463 (484)
T KOG0305|consen 455 LRFWNLFDE 463 (484)
T ss_pred EEeccccCC
Confidence 999999664
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.9e-13 Score=140.10 Aligned_cols=215 Identities=15% Similarity=0.145 Sum_probs=143.1
Q ss_pred cCCeEEEEECCCCeEEEEEE---cCCcEEEEEEcC---CEEEEE-ECCeEEEEECCCCceeEEEecCCCcccCCCCcccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLR---FRSSVCMVRCSP---RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGI 131 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLk---f~s~V~sV~~S~---rlLAV~-~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~ 131 (882)
.++++++|++..++....+. |.+.|-.+++.+ ++++++ .++.|++||++.+++...+.+.-.
T Consensus 40 ~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~e----------- 108 (313)
T KOG1407|consen 40 FDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGE----------- 108 (313)
T ss_pred cCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCc-----------
Confidence 67999999999887776664 667788889875 566665 577899999999999888764211
Q ss_pred cccceeeEEcC--cEEEEeCCCeEe--ccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccc
Q 002778 132 NVGYGPMAVGP--RWLAYASNTLLL--SNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQE 207 (882)
Q Consensus 132 ~~~~g~lAlsp--R~LAyss~~v~l--wdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~ 207 (882)
| .-++++| .++|+.++.-.| -+. +. .+.+... .+.....+
T Consensus 109 n---i~i~wsp~g~~~~~~~kdD~it~id~-----------------------------r~-~~~~~~~---~~~~e~ne 152 (313)
T KOG1407|consen 109 N---INITWSPDGEYIAVGNKDDRITFIDA-----------------------------RT-YKIVNEE---QFKFEVNE 152 (313)
T ss_pred c---eEEEEcCCCCEEEEecCcccEEEEEe-----------------------------cc-cceeehh---cccceeee
Confidence 1 2345555 666665532111 110 00 0000000 00000000
Q ss_pred cCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEec
Q 002778 208 LLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI 287 (882)
Q Consensus 208 l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi 287 (882)
..+. + +....-+ ....|.|.|-...+.+.+..++||.....||.|+|+|++||+||.| -.+-+||+
T Consensus 153 -------~~w~-~-~nd~Ffl----t~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsAD-AlvSLWD~ 218 (313)
T KOG1407|consen 153 -------ISWN-N-SNDLFFL----TNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSAD-ALVSLWDV 218 (313)
T ss_pred -------eeec-C-CCCEEEE----ecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeecccc-ceeeccCh
Confidence 0011 0 0111001 1335899999999999999999999999999999999999999995 46899999
Q ss_pred CCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCC
Q 002778 288 MPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 353 (882)
Q Consensus 288 ~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg 353 (882)
..- .++..+.|- ..+|..|+||.||++||++|.|.-|-|=.++++..
T Consensus 219 ~EL-----------------iC~R~isRl--dwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~ 265 (313)
T KOG1407|consen 219 DEL-----------------ICERCISRL--DWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDR 265 (313)
T ss_pred hHh-----------------hhheeeccc--cCceEEEEeccCcceeeccCccceEEeEecccCCe
Confidence 531 244444442 35799999999999999999999888877776543
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.9e-14 Score=159.40 Aligned_cols=200 Identities=17% Similarity=0.210 Sum_probs=147.7
Q ss_pred ccCCCCCcccc---cCCeEEEEECCCCe------EEEEEE-cCCcEEEEEE--cCCEEE-EEECCeEEEEECCCC--cee
Q 002778 48 MMDSQSGNCVN---SPTAVRFYSFQSHC------YEHVLR-FRSSVCMVRC--SPRIVA-VGLATQIYCFDALTL--ENK 112 (882)
Q Consensus 48 ~~~~~~~~~~~---sp~tVrlWDlkTG~------~V~tLk-f~s~V~sV~~--S~rlLA-V~~d~qI~IWDa~T~--e~l 112 (882)
+.+..++++++ -++.|++|+..... ++.+++ |..+|.++.+ +++.|+ ++.|.+|++|++..+ -++
T Consensus 31 q~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~ 110 (735)
T KOG0308|consen 31 QLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCM 110 (735)
T ss_pred cccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhH
Confidence 33445566554 46899999986433 456666 6778988765 444555 456889999998766 577
Q ss_pred EEEecCCCcccCCCCcccccccceeeEEcCcEEEEe-CCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchh
Q 002778 113 FSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYA-SNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSK 191 (882)
Q Consensus 113 ~tL~t~p~p~~~~~~~~g~~~~~g~lAlspR~LAys-s~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk 191 (882)
.+|.+|.. |. +.|||+ .+.. +|
T Consensus 111 stir~H~D--------------YV------kcla~~ak~~~----------------------------lv--------- 133 (735)
T KOG0308|consen 111 STIRTHKD--------------YV------KCLAYIAKNNE----------------------------LV--------- 133 (735)
T ss_pred hhhhcccc--------------hh------eeeeecccCce----------------------------eE---------
Confidence 77777765 11 225653 2111 01
Q ss_pred hhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCc--EE--------EEec-cCCCCe
Q 002778 192 QFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA--II--------SQFK-AHTSPI 260 (882)
Q Consensus 192 ~la~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~--~v--------~~f~-aH~spI 260 (882)
++|+-|+.|.|||+.++. .+ ..+. +|..+|
T Consensus 134 ---------------------------------------aSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~si 174 (735)
T KOG0308|consen 134 ---------------------------------------ASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSI 174 (735)
T ss_pred ---------------------------------------EecCCCccEEEEEccCcchhhhhhccccccccCCCCCccce
Confidence 045678999999999772 22 2333 789999
Q ss_pred EEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCC
Q 002778 261 SALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK 340 (882)
Q Consensus 261 saLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~D 340 (882)
.+||-++.|+.+|+|+..+ .||+||-.+ + .++.+|+ ||+. .|..|-.++||+.+.++|+|
T Consensus 175 YSLA~N~t~t~ivsGgtek-~lr~wDprt-------~----------~kimkLr-GHTd-NVr~ll~~dDGt~~ls~sSD 234 (735)
T KOG0308|consen 175 YSLAMNQTGTIIVSGGTEK-DLRLWDPRT-------C----------KKIMKLR-GHTD-NVRVLLVNDDGTRLLSASSD 234 (735)
T ss_pred eeeecCCcceEEEecCccc-ceEEecccc-------c----------cceeeee-cccc-ceEEEEEcCCCCeEeecCCC
Confidence 9999999999999999865 599999764 2 4677774 8875 59999999999999999999
Q ss_pred CeEEEEECCCCCCccccccccCC
Q 002778 341 GTCHVFVLSPFGGDSGFQTLSSQ 363 (882)
Q Consensus 341 GTVhIWdI~~~gg~~~l~~H~~~ 363 (882)
|||+||||....+..++..|...
T Consensus 235 gtIrlWdLgqQrCl~T~~vH~e~ 257 (735)
T KOG0308|consen 235 GTIRLWDLGQQRCLATYIVHKEG 257 (735)
T ss_pred ceEEeeeccccceeeeEEeccCc
Confidence 99999999999999998888643
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.6e-12 Score=136.20 Aligned_cols=227 Identities=14% Similarity=0.111 Sum_probs=149.1
Q ss_pred cCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC---CEEEEEE--CCeEEEEECCCCceeEEEecCCCcccCCCCccccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP---RIVAVGL--ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGIN 132 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~---rlLAV~~--d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~ 132 (882)
.+.+|+|||..+|+.++++. +.-.|--++|.. .++..+. ++.|+.-++.+.+.++.+.+|...
T Consensus 34 ~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~----------- 102 (311)
T KOG1446|consen 34 EDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKR----------- 102 (311)
T ss_pred CCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCce-----------
Confidence 35689999999999999997 445677777753 3344443 568999999999999999998773
Q ss_pred ccceeeEEcC---cEEEEe-CCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhcccccccccccccc
Q 002778 133 VGYGPMAVGP---RWLAYA-SNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQEL 208 (882)
Q Consensus 133 ~~~g~lAlsp---R~LAys-s~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l 208 (882)
++.++++| .+|..+ ++++++||.-.-..|.+
T Consensus 103 --V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~------------------------------------------- 137 (311)
T KOG1446|consen 103 --VNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL------------------------------------------- 137 (311)
T ss_pred --EEEEEecCCCCeEEecccCCeEEeeEecCCCCceE-------------------------------------------
Confidence 35677777 555544 34899998521111111
Q ss_pred CCCCCCCCccCCCccccccccccccCCCceEEEEECCCC--cEEEEec---cCCCCeEEEEECCCCCEEEEEEcCCCEEE
Q 002778 209 LPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR--AIISQFK---AHTSPISALCFDPSGTLLVTASVYGNNIN 283 (882)
Q Consensus 209 ~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~--~~v~~f~---aH~spIsaLaFSPdGtlLATAS~dGt~Ir 283 (882)
+.-......++++.+-+.++ +.....|+|||+++- .+-.+|. +-....+.|.|||||+.|.-....+ .|.
T Consensus 138 l~~~~~pi~AfDp~GLifA~----~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s-~~~ 212 (311)
T KOG1446|consen 138 LNLSGRPIAAFDPEGLIFAL----ANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNAS-FIY 212 (311)
T ss_pred EecCCCcceeECCCCcEEEE----ecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCC-cEE
Confidence 11111112233444444332 233349999999864 2344443 3356789999999999888777644 588
Q ss_pred EEecCCCcccCCCCCCccccCCcccEEEEEEecccCC--cEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCcccccc-c
Q 002778 284 IFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA--TIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT-L 360 (882)
Q Consensus 284 VWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a--~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~-H 360 (882)
|.|.-. | ..+..+. +..++ .--+-+|+|||++|.+|+.||+||||+++++.....+++ |
T Consensus 213 ~lDAf~-------G----------~~~~tfs-~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~ 274 (311)
T KOG1446|consen 213 LLDAFD-------G----------TVKSTFS-GYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPN 274 (311)
T ss_pred EEEccC-------C----------cEeeeEe-eccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCC
Confidence 999743 4 1333332 22222 124678999999999999999999999988766666665 4
Q ss_pred cCCC
Q 002778 361 SSQG 364 (882)
Q Consensus 361 ~~~~ 364 (882)
...+
T Consensus 275 ~~~~ 278 (311)
T KOG1446|consen 275 GGPV 278 (311)
T ss_pred CCCc
Confidence 4333
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-12 Score=146.88 Aligned_cols=106 Identities=20% Similarity=0.212 Sum_probs=89.2
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEE
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~ 311 (882)
+++.|++|.+|+=.-.+.-.+++-|..-|.++.|+|||+++||++.||+ |.|||=.+ | ..+.
T Consensus 165 T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgk-i~iyDGkt-------g----------e~vg 226 (603)
T KOG0318|consen 165 TGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGK-IYIYDGKT-------G----------EKVG 226 (603)
T ss_pred eccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCcc-EEEEcCCC-------c----------cEEE
Confidence 5677899999987767777889999999999999999999999999886 88999764 4 4677
Q ss_pred EEEe--cccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccc
Q 002778 312 KLHR--GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSG 356 (882)
Q Consensus 312 ~L~R--G~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~ 356 (882)
+|.- +| ...|+.|+||||++.|+++|.|.|++|||+++.....+
T Consensus 227 ~l~~~~aH-kGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t 272 (603)
T KOG0318|consen 227 ELEDSDAH-KGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVST 272 (603)
T ss_pred EecCCCCc-cccEEEEEECCCCceEEEecCCceEEEEEeeccceEEE
Confidence 7741 33 34799999999999999999999999999998754443
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.8e-13 Score=153.54 Aligned_cols=177 Identities=18% Similarity=0.234 Sum_probs=141.2
Q ss_pred ccCCeEEEEECCC-----CeE--------EEEEEcCCcEEEEEEcC--CEEEEEE-CCeEEEEECCCCceeEEEecCCCc
Q 002778 58 NSPTAVRFYSFQS-----HCY--------EHVLRFRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVP 121 (882)
Q Consensus 58 ~sp~tVrlWDlkT-----G~~--------V~tLkf~s~V~sV~~S~--rlLAV~~-d~qI~IWDa~T~e~l~tL~t~p~p 121 (882)
..+++|+|||++- |.. .++|++...|.+|+++| ++|||++ +++++||-+.|++...+|.+|..|
T Consensus 473 saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLP 552 (888)
T KOG0306|consen 473 SADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLP 552 (888)
T ss_pred cCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccc
Confidence 4689999999741 222 24567889999999996 7999986 889999999999998889888876
Q ss_pred ccCCCCcccccccceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccc
Q 002778 122 QLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTL 201 (882)
Q Consensus 122 ~~~~~~~~g~~~~~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktL 201 (882)
. -.|.++| ++
T Consensus 553 V-------------~smDIS~----------------------------------DS----------------------- 562 (888)
T KOG0306|consen 553 V-------------LSMDISP----------------------------------DS----------------------- 562 (888)
T ss_pred e-------------eEEeccC----------------------------------Cc-----------------------
Confidence 2 2333211 11
Q ss_pred cccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCE
Q 002778 202 SKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNN 281 (882)
Q Consensus 202 s~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~ 281 (882)
+.+. |++.|..|+||-+.=|.+-+.|-||.+.|.++.|-|...++.|+|.|| .
T Consensus 563 ----------------------kliv----TgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~-k 615 (888)
T KOG0306|consen 563 ----------------------KLIV----TGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDG-K 615 (888)
T ss_pred ----------------------CeEE----eccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcc-e
Confidence 1111 456789999999999999999999999999999999999999999976 5
Q ss_pred EEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 002778 282 INIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 350 (882)
Q Consensus 282 IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~ 350 (882)
|+-||-.. +.++.+|. ||+ ..|++++-+|+|.+++++|.|.+|++|.-..
T Consensus 616 vKqWDg~k-----------------Fe~iq~L~-~H~-~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 616 VKQWDGEK-----------------FEEIQKLD-GHH-SEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred EEeechhh-----------------hhhheeec-cch-heeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 99999642 24666664 655 4799999999999999999999999998754
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-12 Score=147.44 Aligned_cols=110 Identities=16% Similarity=0.244 Sum_probs=82.1
Q ss_pred ccCCCceEEEEECCCCc-EEEEec-----cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCC
Q 002778 232 DMDNAGIVVVKDFVTRA-IISQFK-----AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNS 305 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~-~v~~f~-----aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~ss 305 (882)
+.+.||+++|||+..-+ .+..|+ +-.-++...+|+|||+++|+|..||. |.+|+... |.-
T Consensus 286 T~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGS-IQ~W~~~~-------------~~v 351 (641)
T KOG0772|consen 286 TCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGS-IQIWDKGS-------------RTV 351 (641)
T ss_pred EecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCc-eeeeecCC-------------ccc
Confidence 56789999999997643 233332 23457889999999999999999886 99999731 111
Q ss_pred cccEEEEEEecccC-CcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCcccc
Q 002778 306 SHVHLYKLHRGITS-ATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGF 357 (882)
Q Consensus 306 s~~~l~~L~RG~t~-a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l 357 (882)
+..+..+..|.. ..|+||+||+||++|++-+.|+|++||||..+......
T Consensus 352 --~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~ 402 (641)
T KOG0772|consen 352 --RPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNV 402 (641)
T ss_pred --ccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhh
Confidence 223333333333 37999999999999999999999999999988766543
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-12 Score=153.69 Aligned_cols=256 Identities=15% Similarity=0.160 Sum_probs=167.2
Q ss_pred cccccCceEEEEecCCCCC------CCCCcc-cccccccccCccCCCCCccc--ccCCeEEEEECCCCeEEEEEE-cCCc
Q 002778 13 GFRKLHPFLLVVAGEDTNT------LAPGQN-RSHLGGVRDGMMDSQSGNCV--NSPTAVRFYSFQSHCYEHVLR-FRSS 82 (882)
Q Consensus 13 ~f~~~~pll~vv~~d~~~~------~~~~~~-~~~~~~v~~~~~~~~~~~~~--~sp~tVrlWDlkTG~~V~tLk-f~s~ 82 (882)
.|--+||.+|+-.-.+.-. +..... -.|-|+||+.-+-+...=.+ ..+.+|++|+.++.+++.+|. |-+-
T Consensus 16 sFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDY 95 (1202)
T KOG0292|consen 16 SFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDY 95 (1202)
T ss_pred ecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccce
Confidence 4999999988643111100 000111 24668888766533221011 256899999999999999997 8899
Q ss_pred EEEEEEcCC--EEEE-EECCeEEEEECCCCceeEEEecCCCcccCCCCcccccccce-eeEEcC--cEEEEe--CCCeEe
Q 002778 83 VCMVRCSPR--IVAV-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG-PMAVGP--RWLAYA--SNTLLL 154 (882)
Q Consensus 83 V~sV~~S~r--lLAV-~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g-~lAlsp--R~LAys--s~~v~l 154 (882)
|+.+.|.+. .+++ +.|++|+||+-.+.+++.++.+|.. |. ...|-| ..++.+ +.++++
T Consensus 96 VRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnH--------------YVMcAqFhptEDlIVSaSLDQTVRV 161 (1202)
T KOG0292|consen 96 VRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNH--------------YVMCAQFHPTEDLIVSASLDQTVRV 161 (1202)
T ss_pred eEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCce--------------EEEeeccCCccceEEEecccceEEE
Confidence 999999974 4555 4567799999999999999988754 11 223455 555555 358999
Q ss_pred ccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCCCCccCCCccccccccccccC
Q 002778 155 SNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMD 234 (882)
Q Consensus 155 wdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs 234 (882)
||.+++--.+..| + ++ |. ++. +.. ++ .. + -|.
T Consensus 162 WDisGLRkk~~~p---------g--~~------e~--~~~--------~~~------~~---------~d---L---fg~ 193 (1202)
T KOG0292|consen 162 WDISGLRKKNKAP---------G--SL------ED--QMR--------GQQ------GN---------SD---L---FGQ 193 (1202)
T ss_pred EeecchhccCCCC---------C--Cc------hh--hhh--------ccc------cc---------hh---h---cCC
Confidence 9964432111111 0 00 00 000 000 00 00 0 011
Q ss_pred CCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEE
Q 002778 235 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 314 (882)
Q Consensus 235 ~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~ 314 (882)
.|-. +...+.+|+..|+.+||.|.--++++|+. ++.|++|+.... ..|.+-+ .
T Consensus 194 ~DaV----------VK~VLEGHDRGVNwaAfhpTlpliVSG~D-DRqVKlWrmnet---------------KaWEvDt-c 246 (1202)
T KOG0292|consen 194 TDAV----------VKHVLEGHDRGVNWAAFHPTLPLIVSGAD-DRQVKLWRMNET---------------KAWEVDT-C 246 (1202)
T ss_pred cCee----------eeeeecccccccceEEecCCcceEEecCC-cceeeEEEeccc---------------cceeehh-h
Confidence 1211 23457899999999999999999999997 567999998531 1133333 4
Q ss_pred ecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccccc
Q 002778 315 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQ 358 (882)
Q Consensus 315 RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~ 358 (882)
|||.+ .|.++-|.|.-..|.+.|.|++|+|||++...+..+++
T Consensus 247 rgH~n-nVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfr 289 (1202)
T KOG0292|consen 247 RGHYN-NVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFR 289 (1202)
T ss_pred hcccC-CcceEEecCccceeEecCCCccEEEEecccccceeeee
Confidence 78876 69999999999999999999999999999988887774
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.9e-12 Score=133.23 Aligned_cols=176 Identities=22% Similarity=0.296 Sum_probs=133.0
Q ss_pred cCCeEEEEECCCC---eEEEEEE--cCCcEEEEEEcC--CEEEEE-ECCeEEEEECC--CCceeEEEecCCCcccCCCCc
Q 002778 59 SPTAVRFYSFQSH---CYEHVLR--FRSSVCMVRCSP--RIVAVG-LATQIYCFDAL--TLENKFSVLTYPVPQLAGQGA 128 (882)
Q Consensus 59 sp~tVrlWDlkTG---~~V~tLk--f~s~V~sV~~S~--rlLAV~-~d~qI~IWDa~--T~e~l~tL~t~p~p~~~~~~~ 128 (882)
.+++||+|++..+ .+...|. |.-.|++|+++| ++||++ +|.++.||.=. +++++.+|.+|.+.
T Consensus 35 ~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnE------- 107 (312)
T KOG0645|consen 35 TDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENE------- 107 (312)
T ss_pred CCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccc-------
Confidence 4789999999853 3444453 778899999986 888885 58899999644 56788888888763
Q ss_pred ccccccceeeEEcC--cEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhcccccccccccc
Q 002778 129 VGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQ 206 (882)
Q Consensus 129 ~g~~~~~g~lAlsp--R~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~ 206 (882)
.-.+|+++ ++||.
T Consensus 108 ------VK~Vaws~sG~~LAT----------------------------------------------------------- 122 (312)
T KOG0645|consen 108 ------VKCVAWSASGNYLAT----------------------------------------------------------- 122 (312)
T ss_pred ------eeEEEEcCCCCEEEE-----------------------------------------------------------
Confidence 12344433 34433
Q ss_pred ccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCC---cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEE
Q 002778 207 ELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR---AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNIN 283 (882)
Q Consensus 207 ~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~---~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~Ir 283 (882)
.+.|..|-||.+..+ .++..|+.|+..|--+.|+|.-.+|||+|.|. +|+
T Consensus 123 --------------------------CSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDn-TIk 175 (312)
T KOG0645|consen 123 --------------------------CSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDN-TIK 175 (312)
T ss_pred --------------------------eeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCC-eEE
Confidence 234556777777633 57889999999999999999999999999965 599
Q ss_pred EEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECC
Q 002778 284 IFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 349 (882)
Q Consensus 284 VWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~ 349 (882)
+|+-.+. .|| ..+.+| .|+++ .|++++|.+.|..|+++++|+||+||..-
T Consensus 176 ~~~~~~d----------ddW----~c~~tl-~g~~~-TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 176 VYRDEDD----------DDW----ECVQTL-DGHEN-TVWSLAFDNIGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred EEeecCC----------CCe----eEEEEe-cCccc-eEEEEEecCCCceEEEecCCcceEeeeec
Confidence 9997531 234 455666 36554 79999999999999999999999999864
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.1e-13 Score=144.95 Aligned_cols=109 Identities=24% Similarity=0.337 Sum_probs=96.5
Q ss_pred ccCCCceEEEEECCCCcEEEEec-cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEE
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 310 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~-aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l 310 (882)
+|++||.|+||.+.+|.++..|. ||+..|++|.||.|+..+.+||.| .++||.-++. | +.+
T Consensus 280 sGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD-~tvRiHGlKS-------G----------K~L 341 (508)
T KOG0275|consen 280 SGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFD-QTVRIHGLKS-------G----------KCL 341 (508)
T ss_pred ccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhccccc-ceEEEecccc-------c----------hhH
Confidence 56899999999999999999997 999999999999999999999994 5699988863 4 567
Q ss_pred EEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccccccc
Q 002778 311 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTL 360 (882)
Q Consensus 311 ~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~H 360 (882)
.++ ||++ .-|....|++||.+|.++|+||||+||+..+..+..+++.-
T Consensus 342 KEf-rGHs-Syvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~ 389 (508)
T KOG0275|consen 342 KEF-RGHS-SYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPL 389 (508)
T ss_pred HHh-cCcc-ccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCC
Confidence 777 6876 46999999999999999999999999999998888777644
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.9e-13 Score=148.86 Aligned_cols=215 Identities=17% Similarity=0.258 Sum_probs=152.0
Q ss_pred CCcEEEEEEcC--CEEEEE-ECCeEEEEECCCCceeEEEecCCCcccCCCCcccccccceeeEEcC--cEEEEeCC--Ce
Q 002778 80 RSSVCMVRCSP--RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASN--TL 152 (882)
Q Consensus 80 ~s~V~sV~~S~--rlLAV~-~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g~lAlsp--R~LAyss~--~v 152 (882)
+-.|..|++.+ |+|++| ..+..-+|+..+......+..|..| +..|.+++ .|+..++. -+
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~-------------Vr~m~ws~~g~wmiSgD~gG~i 162 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSP-------------VRTMKWSHNGTWMISGDKGGMI 162 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhccc-------------ceeEEEccCCCEEEEcCCCceE
Confidence 45688999986 566665 5678999998665444444456553 34566665 78877664 36
Q ss_pred EeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCCCCccCCCccccccccccc
Q 002778 153 LLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGAD 232 (882)
Q Consensus 153 ~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~t 232 (882)
++|..... .| |.+..+..+-.. ..+++++ +.+.+ +
T Consensus 163 KyWqpnmn--------------------nV----------------k~~~ahh~eaIR---dlafSpn-DskF~-----t 197 (464)
T KOG0284|consen 163 KYWQPNMN--------------------NV----------------KIIQAHHAEAIR---DLAFSPN-DSKFL-----T 197 (464)
T ss_pred Eecccchh--------------------hh----------------HHhhHhhhhhhh---eeccCCC-CceeE-----E
Confidence 66752100 00 000000000000 1233442 23331 5
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEE
Q 002778 233 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 312 (882)
Q Consensus 233 gs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~ 312 (882)
++.||+|+|||+...+.-..|++|...|.+++|+|.-.+||++|.| +.|++||.+. | .++..
T Consensus 198 ~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskD-nlVKlWDprS-------g----------~cl~t 259 (464)
T KOG0284|consen 198 CSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKD-NLVKLWDPRS-------G----------SCLAT 259 (464)
T ss_pred ecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCC-ceeEeecCCC-------c----------chhhh
Confidence 6889999999999988888999999999999999999999999985 5899999864 3 35666
Q ss_pred EEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccccccccCCCCCCcccCC
Q 002778 313 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPV 372 (882)
Q Consensus 313 L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~H~~~~~~~~~sp~ 372 (882)
++ +|. ..|..+.|+|++.||+++|.|.++++|||...+....+++|...+.....+|+
T Consensus 260 lh-~HK-ntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~ 317 (464)
T KOG0284|consen 260 LH-GHK-NTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPL 317 (464)
T ss_pred hh-hcc-ceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccc
Confidence 64 444 46999999999999999999999999999988888899999876666656664
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.3e-12 Score=146.15 Aligned_cols=119 Identities=19% Similarity=0.248 Sum_probs=87.4
Q ss_pred cCCCceEEEEECCCCcEEEEe---ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCccc----CCCCC-------
Q 002778 233 MDNAGIVVVKDFVTRAIISQF---KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR----SGSGN------- 298 (882)
Q Consensus 233 gs~dG~V~VWDl~s~~~v~~f---~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~----~~sG~------- 298 (882)
|...|+|.+|++.+|-....| .+|..+|..|+.+--+++++||+.+|. +++||....... .+...
T Consensus 466 G~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gi-lkfw~f~~k~l~~~l~l~~~~~~iv~hr 544 (910)
T KOG1539|consen 466 GYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGI-LKFWDFKKKVLKKSLRLGSSITGIVYHR 544 (910)
T ss_pred eccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcce-EEEEecCCcceeeeeccCCCcceeeeee
Confidence 466899999999999888888 699999999999999999999999885 899998642100 00000
Q ss_pred -------CccccC------CcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCc
Q 002778 299 -------HKYDWN------SSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD 354 (882)
Q Consensus 299 -------~~~d~s------ss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~ 354 (882)
...+.. ...+.+.+| +||+ .+|++++|||||+||++++.|+||++||+.+....
T Consensus 545 ~s~l~a~~~ddf~I~vvD~~t~kvvR~f-~gh~-nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lI 611 (910)
T KOG1539|consen 545 VSDLLAIALDDFSIRVVDVVTRKVVREF-WGHG-NRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLI 611 (910)
T ss_pred hhhhhhhhcCceeEEEEEchhhhhhHHh-hccc-cceeeeEeCCCCcEEEEeecCCcEEEEeccCccee
Confidence 000000 000111222 4665 58999999999999999999999999999876543
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.4e-13 Score=138.20 Aligned_cols=189 Identities=16% Similarity=0.166 Sum_probs=132.4
Q ss_pred cCCeEEEEECCC-CeEEEEEE-cCCcEEEEEEcC---C-EEEEEECCeEEEEECCCCceeEEEecCCCcccCCCCccccc
Q 002778 59 SPTAVRFYSFQS-HCYEHVLR-FRSSVCMVRCSP---R-IVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGIN 132 (882)
Q Consensus 59 sp~tVrlWDlkT-G~~V~tLk-f~s~V~sV~~S~---r-lLAV~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~ 132 (882)
-++++||||+.- -..++.++ |...|++|..+. + +|..+.|++|++||....+.+.|+.+|..
T Consensus 81 GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~------------ 148 (311)
T KOG0277|consen 81 GDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNS------------ 148 (311)
T ss_pred cCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCcc------------
Confidence 468999999642 34666666 888899999874 3 44445688999999887777777766533
Q ss_pred ccceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCC
Q 002778 133 VGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG 212 (882)
Q Consensus 133 ~~~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdg 212 (882)
+.|.. .++|....++
T Consensus 149 ------------~Iy~a-----------------------~~sp~~~nlf------------------------------ 163 (311)
T KOG0277|consen 149 ------------CIYQA-----------------------AFSPHIPNLF------------------------------ 163 (311)
T ss_pred ------------EEEEE-----------------------ecCCCCCCeE------------------------------
Confidence 11110 0011111111
Q ss_pred CCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEecCCCc
Q 002778 213 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSC 291 (882)
Q Consensus 213 s~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSP-dGtlLATAS~dGt~IrVWdi~p~~ 291 (882)
+ +++.||+++|||+........|.+|...|.+..|+. +-.+|||++.|+ .||+||+..-
T Consensus 164 ----------------a--s~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~-~vr~wDir~~- 223 (311)
T KOG0277|consen 164 ----------------A--SASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDN-LVRGWDIRNL- 223 (311)
T ss_pred ----------------E--EccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCc-eEEEEehhhc-
Confidence 1 346789999999986444445999999999999987 557999999965 6999999642
Q ss_pred ccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCC-CEEEEEeCCCeEEEEECCCCC-Ccccccccc
Q 002778 292 MRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPFG-GDSGFQTLS 361 (882)
Q Consensus 292 ~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg-~~LAsgS~DGTVhIWdI~~~g-g~~~l~~H~ 361 (882)
.+++.+|. |+.- -|..|.|||.. ..||++|-|-|++|||..... ...+..-|+
T Consensus 224 ---------------r~pl~eL~-gh~~-AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~Ht 278 (311)
T KOG0277|consen 224 ---------------RTPLFELN-GHGL-AVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHT 278 (311)
T ss_pred ---------------cccceeec-CCce-EEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccc
Confidence 14678884 6554 49999999975 578999999999999987443 333445565
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.1e-12 Score=132.91 Aligned_cols=188 Identities=14% Similarity=0.131 Sum_probs=138.6
Q ss_pred cCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC--CEEEEE-ECCeEEEEECCCCceeEEEecCCCcccCCCCccccccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 134 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~--rlLAV~-~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~ 134 (882)
.+.++.+|-...|+.+.+++ |.++|+++.++. +.|+.+ .|+++++||+.+|+++.++.+. .|
T Consensus 30 KD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~-~~------------- 95 (327)
T KOG0643|consen 30 KDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTN-SP------------- 95 (327)
T ss_pred CCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecC-Ce-------------
Confidence 46788999999999999998 999999998874 566665 5778999999999999998752 11
Q ss_pred ceeeEEcC--cEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCC
Q 002778 135 YGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG 212 (882)
Q Consensus 135 ~g~lAlsp--R~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdg 212 (882)
...+.|++ .++.+..+.
T Consensus 96 Vk~~~F~~~gn~~l~~tD~------------------------------------------------------------- 114 (327)
T KOG0643|consen 96 VKRVDFSFGGNLILASTDK------------------------------------------------------------- 114 (327)
T ss_pred eEEEeeccCCcEEEEEehh-------------------------------------------------------------
Confidence 11222221 111111100
Q ss_pred CCCCccCCCccccccccccccCCCceEEEEECC-------CCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEE
Q 002778 213 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV-------TRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIF 285 (882)
Q Consensus 213 s~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~-------s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVW 285 (882)
.-+..+.|.++|+. +..++..+..+.+.|+.+-|+|-|..|+++..+|. |++|
T Consensus 115 -------------------~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~-is~~ 174 (327)
T KOG0643|consen 115 -------------------QMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGS-ISIY 174 (327)
T ss_pred -------------------hcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCc-EEEE
Confidence 01234567777776 45667888889999999999999999999999886 9999
Q ss_pred ecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCcccccc
Q 002778 286 RIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 359 (882)
Q Consensus 286 di~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~ 359 (882)
|+.. | ..+.+-.+- +...|.+|.||+|..+++++|.|.|.+|||+.+.....++.+
T Consensus 175 da~~-------g----------~~~v~s~~~-h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t 230 (327)
T KOG0643|consen 175 DART-------G----------KELVDSDEE-HSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT 230 (327)
T ss_pred Eccc-------C----------ceeeechhh-hccccccccccCCcceEEecccCccceeeeccceeeEEEeee
Confidence 9975 3 122222222 334799999999999999999999999999998766655544
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.6e-12 Score=132.67 Aligned_cols=128 Identities=14% Similarity=0.201 Sum_probs=97.0
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCc-----ccC--CCCCCccccCC
Q 002778 233 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSC-----MRS--GSGNHKYDWNS 305 (882)
Q Consensus 233 gs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~-----~~~--~sG~~~~d~ss 305 (882)
++.|..|++||+.+|+++..|++|...|++++|+-+.+.+++||.|- .+|+||..... ..+ ..|..+.+.+.
T Consensus 77 ~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~-s~r~wDCRS~s~ePiQildea~D~V~Si~v~~ 155 (307)
T KOG0316|consen 77 CGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDS-SVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE 155 (307)
T ss_pred CCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccc-eeEEEEcccCCCCccchhhhhcCceeEEEecc
Confidence 45688899999999999999999999999999999999999999955 59999975321 000 00101111111
Q ss_pred ---------cccEEEEEEeccc-----CCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCcccccccc
Q 002778 306 ---------SHVHLYKLHRGIT-----SATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 361 (882)
Q Consensus 306 ---------s~~~l~~L~RG~t-----~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~H~ 361 (882)
-..+.|.++.|.- ..+|++++||+|++.+.+++.|+|+||-|-++++-.....+|.
T Consensus 156 heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhk 225 (307)
T KOG0316|consen 156 HEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHK 225 (307)
T ss_pred cEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccc
Confidence 0145677766643 2479999999999999999999999999988876666677875
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.9e-12 Score=141.59 Aligned_cols=106 Identities=18% Similarity=0.290 Sum_probs=86.4
Q ss_pred ccCCCceEEEEECC--CCcEEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCccc
Q 002778 232 DMDNAGIVVVKDFV--TRAIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 308 (882)
Q Consensus 232 tgs~dG~V~VWDl~--s~~~v~~f~aH~spIsaLaFSP-dGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~ 308 (882)
+.+.||.+.|||++ +.+......+|+.+|.+++|+| ++.+|||||.|++ ++|||++.- . .
T Consensus 245 sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~t-V~LwDlRnL------~----------~ 307 (422)
T KOG0264|consen 245 SVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKT-VALWDLRNL------N----------K 307 (422)
T ss_pred eecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCc-EEEeechhc------c----------c
Confidence 34678999999999 5566678889999999999999 6689999999876 899999641 1 3
Q ss_pred EEEEEEecccCCcEEEEEEccCC-CEEEEEeCCCeEEEEECCCCCCccc
Q 002778 309 HLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPFGGDSG 356 (882)
Q Consensus 309 ~l~~L~RG~t~a~I~sLaFSPDg-~~LAsgS~DGTVhIWdI~~~gg~~~ 356 (882)
.++.+. |+. ..|..|.|||+- ..||+++.|+.++|||+..-++...
T Consensus 308 ~lh~~e-~H~-dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~ 354 (422)
T KOG0264|consen 308 PLHTFE-GHE-DEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS 354 (422)
T ss_pred Cceecc-CCC-cceEEEEeCCCCCceeEecccCCcEEEEeccccccccC
Confidence 567764 554 469999999975 6788899999999999988776653
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.8e-13 Score=141.80 Aligned_cols=215 Identities=14% Similarity=0.105 Sum_probs=142.5
Q ss_pred ccCCeEEEEECCCCeEEEEEEcCCcEEEEEEcC--CEEE-EEECCeEEEEECCCCce-eEEEecCCCcccCCCCcccccc
Q 002778 58 NSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVA-VGLATQIYCFDALTLEN-KFSVLTYPVPQLAGQGAVGINV 133 (882)
Q Consensus 58 ~sp~tVrlWDlkTG~~V~tLkf~s~V~sV~~S~--rlLA-V~~d~qI~IWDa~T~e~-l~tL~t~p~p~~~~~~~~g~~~ 133 (882)
..+-+.++||.-||..+++|+|..-|.+|+|+. ..|+ .+.+.-++|||++..+. ...+.+|+. ++
T Consensus 78 aadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg---------~I-- 146 (334)
T KOG0278|consen 78 AADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTG---------GI-- 146 (334)
T ss_pred cccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCC---------cc--
Confidence 367889999999999999999999999999986 3444 45566789999987652 233333433 11
Q ss_pred cceeeEEcC-cEEEEeC-CCeEeccC--CCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccC
Q 002778 134 GYGPMAVGP-RWLAYAS-NTLLLSNS--GRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELL 209 (882)
Q Consensus 134 ~~g~lAlsp-R~LAyss-~~v~lwdt--G~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~ 209 (882)
.......+- ..|..+. .++++||. |.. .|.|..+
T Consensus 147 r~v~wc~eD~~iLSSadd~tVRLWD~rTgt~-v~sL~~~----------------------------------------- 184 (334)
T KOG0278|consen 147 RTVLWCHEDKCILSSADDKTVRLWDHRTGTE-VQSLEFN----------------------------------------- 184 (334)
T ss_pred eeEEEeccCceEEeeccCCceEEEEeccCcE-EEEEecC-----------------------------------------
Confidence 111122222 3444333 37999984 221 2222110
Q ss_pred CCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCC
Q 002778 210 PDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP 289 (882)
Q Consensus 210 pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p 289 (882)
.+..+.-.+++++.+.+ ...+.|..||..+...++.++.. ..|.+..++|+-..++.++.|+. ++.||..+
T Consensus 185 --s~VtSlEvs~dG~ilTi-----a~gssV~Fwdaksf~~lKs~k~P-~nV~SASL~P~k~~fVaGged~~-~~kfDy~T 255 (334)
T KOG0278|consen 185 --SPVTSLEVSQDGRILTI-----AYGSSVKFWDAKSFGLLKSYKMP-CNVESASLHPKKEFFVAGGEDFK-VYKFDYNT 255 (334)
T ss_pred --CCCcceeeccCCCEEEE-----ecCceeEEeccccccceeeccCc-cccccccccCCCceEEecCcceE-EEEEeccC
Confidence 00000111122333322 24578999999999888887643 46889999999999999998775 78889864
Q ss_pred CcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCC
Q 002778 290 SCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 352 (882)
Q Consensus 290 ~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~g 352 (882)
| ..+-.+..|+. .+|.+|.|||||..-|+||.||||+||...+..
T Consensus 256 -------g----------eEi~~~nkgh~-gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 256 -------G----------EEIGSYNKGHF-GPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred -------C----------ceeeecccCCC-CceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 3 12222234655 579999999999999999999999999987653
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.3e-12 Score=149.69 Aligned_cols=245 Identities=15% Similarity=0.131 Sum_probs=174.0
Q ss_pred CCeEEEEECCCCeEEEEEEcCCcEEEEEEcC--CEEEEEEC-CeEEEEECCCCceeEEEecCCCcccCCCCcccccccce
Q 002778 60 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 136 (882)
Q Consensus 60 p~tVrlWDlkTG~~V~tLkf~s~V~sV~~S~--rlLAV~~d-~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g 136 (882)
.+.|+||+..|+++++++... -+.+..|-| +.+++|.. +.+.+||+....++-++..|.. ..+
T Consensus 393 ~~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdg-------------aIW 458 (888)
T KOG0306|consen 393 GESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDG-------------AIW 458 (888)
T ss_pred CCcEEEEEccCcceeEEeccc-cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhcccc-------------cee
Confidence 389999999999999999877 455556644 56666764 6799999999888777776644 257
Q ss_pred eeEEcC--cEEE--EeCCCeEeccCCCCCCccCCCCCCCCCcC-CCCCccEEEeeccchhhhhccccccccccccccCCC
Q 002778 137 PMAVGP--RWLA--YASNTLLLSNSGRLSPQNLTPSGVSPSTS-PGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPD 211 (882)
Q Consensus 137 ~lAlsp--R~LA--yss~~v~lwdtG~vs~q~lt~~~vs~s~S-P~~GslVA~~A~essk~la~GliktLs~~~~~l~pd 211 (882)
+++++| +..+ .++.++++|+---+ ++ |+....+-. +... ++| + ++
T Consensus 459 si~~~pD~~g~vT~saDktVkfWdf~l~-------------~~~~gt~~k~ls--------l~~~--rtL-----e-l~- 508 (888)
T KOG0306|consen 459 SISLSPDNKGFVTGSADKTVKFWDFKLV-------------VSVPGTQKKVLS--------LKHT--RTL-----E-LE- 508 (888)
T ss_pred eeeecCCCCceEEecCCcEEEEEeEEEE-------------eccCcccceeee--------eccc--eEE-----e-cc-
Confidence 888888 3333 34568999972100 00 000000000 0000 011 0 11
Q ss_pred CCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCc
Q 002778 212 GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSC 291 (882)
Q Consensus 212 gs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~ 291 (882)
......+.+|+++++++ +--|.+|+||-+.+.+..-.+.+|.-||.+|..|||+.+++|+|.|. +|+||-+.-
T Consensus 509 ddvL~v~~Spdgk~LaV----sLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADK-nVKiWGLdF-- 581 (888)
T KOG0306|consen 509 DDVLCVSVSPDGKLLAV----SLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADK-NVKIWGLDF-- 581 (888)
T ss_pred ccEEEEEEcCCCcEEEE----EeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCC-ceEEecccc--
Confidence 11234556677788764 35789999999999999999999999999999999999999999955 599999853
Q ss_pred ccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccccccccCCCCCCcccC
Q 002778 292 MRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFP 371 (882)
Q Consensus 292 ~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~H~~~~~~~~~sp 371 (882)
|. +-..+ -+|. ..|.+|.|-|+...+.+++.|+.|+-||-..+.....+.+|...+-+..+.|
T Consensus 582 -----GD----------CHKS~-fAHd-DSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~ 644 (888)
T KOG0306|consen 582 -----GD----------CHKSF-FAHD-DSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSP 644 (888)
T ss_pred -----ch----------hhhhh-hccc-CceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcC
Confidence 31 11122 1343 4699999999999999999999999999999999999999986665555554
Q ss_pred C
Q 002778 372 V 372 (882)
Q Consensus 372 ~ 372 (882)
.
T Consensus 645 ~ 645 (888)
T KOG0306|consen 645 N 645 (888)
T ss_pred C
Confidence 3
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.8e-12 Score=140.84 Aligned_cols=110 Identities=18% Similarity=0.346 Sum_probs=83.2
Q ss_pred ccCCCceEEEEECCCC-cEEEEeccCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEecCCCcccCCCCCCcc--ccCCcc
Q 002778 232 DMDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKY--DWNSSH 307 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~-~~v~~f~aH~spIsaLaFSPdG-tlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~--d~sss~ 307 (882)
+++.|++|.|||+++. +.+.+|.+|...|..|.|||.- +.|||++.|++ ++|||+..- |.... +-....
T Consensus 290 T~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~r-l~vWDls~i------g~eq~~eda~dgp 362 (422)
T KOG0264|consen 290 TGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRR-LNVWDLSRI------GEEQSPEDAEDGP 362 (422)
T ss_pred eccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCc-EEEEecccc------ccccChhhhccCC
Confidence 4677999999999986 4678999999999999999964 79999999776 799999532 21100 001111
Q ss_pred cEEEEEEecccCCcEEEEEEccCCCE-EEEEeCCCeEEEEECC
Q 002778 308 VHLYKLHRGITSATIQDICFSHYSQW-IAIVSSKGTCHVFVLS 349 (882)
Q Consensus 308 ~~l~~L~RG~t~a~I~sLaFSPDg~~-LAsgS~DGTVhIWdI~ 349 (882)
..+.=.++||+ +.|.+++|+|+..| ||+.+.|+.++||...
T Consensus 363 pEllF~HgGH~-~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 363 PELLFIHGGHT-AKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cceeEEecCcc-cccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 22333467876 57999999999987 5667899999999986
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.3e-11 Score=148.39 Aligned_cols=225 Identities=17% Similarity=0.198 Sum_probs=153.2
Q ss_pred cCCeEEEEECCC-------Ce-----------EEEEEE-cCCcEEEEEEcC--CEEEE-EECCeEEEEECCCCceeEEEe
Q 002778 59 SPTAVRFYSFQS-------HC-----------YEHVLR-FRSSVCMVRCSP--RIVAV-GLATQIYCFDALTLENKFSVL 116 (882)
Q Consensus 59 sp~tVrlWDlkT-------G~-----------~V~tLk-f~s~V~sV~~S~--rlLAV-~~d~qI~IWDa~T~e~l~tL~ 116 (882)
.++.|.||.-.. |. ++..|. |++.|.+|.+++ .+||. +.|++|.|||+.|++++.++.
T Consensus 89 DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~ 168 (942)
T KOG0973|consen 89 DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR 168 (942)
T ss_pred CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeee
Confidence 457888898762 11 555665 889999999997 56665 568999999999999999999
Q ss_pred cCCCcccCCCCcccccccceeeEEcC--cEEEEeC--CCeEeccCCCCCCccC-CCCCCCCCcCCCCCccEEEeeccchh
Q 002778 117 TYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYAS--NTLLLSNSGRLSPQNL-TPSGVSPSTSPGGSSLVARYAMEHSK 191 (882)
Q Consensus 117 t~p~p~~~~~~~~g~~~~~g~lAlsp--R~LAyss--~~v~lwdtG~vs~q~l-t~~~vs~s~SP~~GslVA~~A~essk 191 (882)
+|... ...+++.| +|+|.-+ .++++|.+..-...+. +.|- ..+|
T Consensus 169 ~H~s~-------------VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf---~~~~--------------- 217 (942)
T KOG0973|consen 169 GHQSL-------------VKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPF---EESP--------------- 217 (942)
T ss_pred ccccc-------------ccceEECCccCeeeeecCCceEEEEEcccceeeEeeccch---hhCC---------------
Confidence 88763 23467888 9999754 3789998643211111 1010 0000
Q ss_pred hhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECC----
Q 002778 192 QFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP---- 267 (882)
Q Consensus 192 ~la~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSP---- 267 (882)
++-+. ..++=+|+++.++.+.+.-...-++.|.+-.+-+.-..|-+|..|+.+++|+|
T Consensus 218 ---------~~T~f---------~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe 279 (942)
T KOG0973|consen 218 ---------LTTFF---------LRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFE 279 (942)
T ss_pred ---------Cccee---------eecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhc
Confidence 00000 01122334455444332223345788888888888889999999999999998
Q ss_pred ----CCC---------EEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEE
Q 002778 268 ----SGT---------LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI 334 (882)
Q Consensus 268 ----dGt---------lLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~L 334 (882)
+|+ .+|+||.|++ |-||..... +.+...+ ...+..|.|++|||||.-|
T Consensus 280 ~~~~ng~~~~~~~~y~i~AvgSqDrS-lSVW~T~~~-----------------RPl~vi~-~lf~~SI~DmsWspdG~~L 340 (942)
T KOG0973|consen 280 RNNKNGTSTQPNCYYCIAAVGSQDRS-LSVWNTALP-----------------RPLFVIH-NLFNKSIVDMSWSPDGFSL 340 (942)
T ss_pred cccccCCccCCCcceEEEEEecCCcc-EEEEecCCC-----------------Cchhhhh-hhhcCceeeeeEcCCCCeE
Confidence 221 5788888765 899998421 3443332 2234579999999999999
Q ss_pred EEEeCCCeEEEEECCCC
Q 002778 335 AIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 335 AsgS~DGTVhIWdI~~~ 351 (882)
.++|.||||.++.++..
T Consensus 341 facS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 341 FACSLDGTVALIHFEEK 357 (942)
T ss_pred EEEecCCeEEEEEcchH
Confidence 99999999999998753
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.7e-12 Score=144.87 Aligned_cols=206 Identities=17% Similarity=0.172 Sum_probs=148.2
Q ss_pred cCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcCC--EEEEE-ECCeEEEEECCCC-ceeEEEecCCCcccCCCCcccccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSPR--IVAVG-LATQIYCFDALTL-ENKFSVLTYPVPQLAGQGAVGINV 133 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~r--lLAV~-~d~qI~IWDa~T~-e~l~tL~t~p~p~~~~~~~~g~~~ 133 (882)
.+..||||+..|++.|++++ |++-|++|+..|. .+.++ .|-.|++||-... .+.+++.+|..=
T Consensus 75 DD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~Hy------------ 142 (794)
T KOG0276|consen 75 DDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHY------------ 142 (794)
T ss_pred CCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceE------------
Confidence 56889999999999999998 8899999999873 44444 4557999998754 356777766540
Q ss_pred cceeeEEcC---cEEEEe--CCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhcccccccccc----
Q 002778 134 GYGPMAVGP---RWLAYA--SNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKY---- 204 (882)
Q Consensus 134 ~~g~lAlsp---R~LAys--s~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~---- 204 (882)
.=.++|.| ...|.+ +.++++|..|.-.|- .||.+|
T Consensus 143 -VMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~n-----------------------------------fTl~gHekGV 186 (794)
T KOG0276|consen 143 -VMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPN-----------------------------------FTLEGHEKGV 186 (794)
T ss_pred -EEEEEecCCCccceeeeeccccEEEEEcCCCCCc-----------------------------------eeeeccccCc
Confidence 12356666 445544 468999987632110 111111
Q ss_pred -ccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEE
Q 002778 205 -CQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNIN 283 (882)
Q Consensus 205 -~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~Ir 283 (882)
|-++++.| +..++. +|..|-+|+|||..+..+++++.+|+..|+++.|.|.=.+++|+|.||+ +|
T Consensus 187 N~Vdyy~~g---------dkpylI----sgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGT-vr 252 (794)
T KOG0276|consen 187 NCVDYYTGG---------DKPYLI----SGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGT-VR 252 (794)
T ss_pred ceEEeccCC---------CcceEE----ecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCcc-EE
Confidence 11222222 111221 5678999999999999999999999999999999999999999999987 89
Q ss_pred EEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEE
Q 002778 284 IFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHV 345 (882)
Q Consensus 284 VWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhI 345 (882)
||...+. +....|.-|. .+||+|+-.+.++.+|+|.+.|.|.|
T Consensus 253 iWhs~Ty-----------------~lE~tLn~gl--eRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 253 IWNSKTY-----------------KLEKTLNYGL--ERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred EecCcce-----------------ehhhhhhcCC--ceEEEEeecCCCCeEEEeccCCcEEE
Confidence 9998542 1222222233 36999999999999999999987754
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-12 Score=152.11 Aligned_cols=197 Identities=15% Similarity=0.227 Sum_probs=134.1
Q ss_pred Ccccc---cCCeEEEEECCC---CeEEEEEE-cCCcEEEEEEcC---CEEEEE-ECCeEEEEECCCCceeEEEecCCCcc
Q 002778 54 GNCVN---SPTAVRFYSFQS---HCYEHVLR-FRSSVCMVRCSP---RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQ 122 (882)
Q Consensus 54 ~~~~~---sp~tVrlWDlkT---G~~V~tLk-f~s~V~sV~~S~---rlLAV~-~d~qI~IWDa~T~e~l~tL~t~p~p~ 122 (882)
.|+|+ .-+.|.+||+.. .+.+..|. |.-.|..+.|+. .+|++| .|+.|++||++.-+...+......
T Consensus 100 ~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSE-- 177 (839)
T KOG0269|consen 100 SNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSE-- 177 (839)
T ss_pred hhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccch--
Confidence 44553 348899999976 44444454 777899999974 677765 588999999987665544433111
Q ss_pred cCCCCcccccccceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhcccccccc
Q 002778 123 LAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLS 202 (882)
Q Consensus 123 ~~~~~~~g~~~~~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs 202 (882)
.. |-++|+.. .+.
T Consensus 178 -----------Si-------RDV~fsp~---------------------------~~~---------------------- 190 (839)
T KOG0269|consen 178 -----------SI-------RDVKFSPG---------------------------YGN---------------------- 190 (839)
T ss_pred -----------hh-------hceeeccC---------------------------CCc----------------------
Confidence 01 22222210 000
Q ss_pred ccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCC-cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCE
Q 002778 203 KYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDPSGTLLVTASVYGNN 281 (882)
Q Consensus 203 ~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~-~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~ 281 (882)
. ++ ++...|.+++||+... ++..+|.||.+||.++.|+|++.+||||+.|+ .
T Consensus 191 ---------------------~---F~--s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK-~ 243 (839)
T KOG0269|consen 191 ---------------------K---FA--SIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDK-M 243 (839)
T ss_pred ---------------------e---EE--EecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCc-c
Confidence 0 01 3456799999999864 56788999999999999999999999999865 5
Q ss_pred EEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCE-EEEEeC--CCeEEEEECCC-CCCcccc
Q 002778 282 INIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW-IAIVSS--KGTCHVFVLSP-FGGDSGF 357 (882)
Q Consensus 282 IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~-LAsgS~--DGTVhIWdI~~-~gg~~~l 357 (882)
|+||+.... ....+..+. +.++|..|.|-|+-++ ||+++. |-.||||||.. +=--.++
T Consensus 244 vkiWd~t~~---------------~~~~~~tIn---Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~ 305 (839)
T KOG0269|consen 244 VKIWDMTDS---------------RAKPKHTIN---TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATF 305 (839)
T ss_pred EEEEeccCC---------------CccceeEEe---ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceee
Confidence 999998531 112334443 4578999999999876 566653 77899999964 4444567
Q ss_pred ccccCCC
Q 002778 358 QTLSSQG 364 (882)
Q Consensus 358 ~~H~~~~ 364 (882)
..|...+
T Consensus 306 ~eH~~~v 312 (839)
T KOG0269|consen 306 LEHTDSV 312 (839)
T ss_pred eccCccc
Confidence 8887433
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-12 Score=140.34 Aligned_cols=216 Identities=13% Similarity=0.168 Sum_probs=152.7
Q ss_pred cCCeEEEEECCCCeEEEEEE---------cCCcEEEEEEcC--CEEEEE-ECCeEEEEECCCCceeEEEe-cCCCcccCC
Q 002778 59 SPTAVRFYSFQSHCYEHVLR---------FRSSVCMVRCSP--RIVAVG-LATQIYCFDALTLENKFSVL-TYPVPQLAG 125 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLk---------f~s~V~sV~~S~--rlLAV~-~d~qI~IWDa~T~e~l~tL~-t~p~p~~~~ 125 (882)
.++-|.+||.-+|+..+.|+ +..+|+++.|++ ..||.| .|++|+||.+.||.|++.+. .|..
T Consensus 233 vDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtk----- 307 (508)
T KOG0275|consen 233 VDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTK----- 307 (508)
T ss_pred ccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhcc-----
Confidence 57899999999999888775 467899999998 478886 48899999999999998886 3433
Q ss_pred CCcccccccceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccc
Q 002778 126 QGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYC 205 (882)
Q Consensus 126 ~~~~g~~~~~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~ 205 (882)
+..+ |.|+-+ +..+
T Consensus 308 ----------Gvt~-----l~FSrD---------------------------~Sqi------------------------ 321 (508)
T KOG0275|consen 308 ----------GVTC-----LSFSRD---------------------------NSQI------------------------ 321 (508)
T ss_pred ----------CeeE-----EEEccC---------------------------cchh------------------------
Confidence 1112 223221 1000
Q ss_pred cccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEE
Q 002778 206 QELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIF 285 (882)
Q Consensus 206 ~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVW 285 (882)
+ +++.|.+|+|.-+.+|++++.|++|++-|+...|.+||..+.+||.||+ |+||
T Consensus 322 ----------------------L---S~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgt-vkvW 375 (508)
T KOG0275|consen 322 ----------------------L---SASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGT-VKVW 375 (508)
T ss_pred ----------------------h---cccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCcc-EEEe
Confidence 0 3467899999999999999999999999999999999999999999887 8999
Q ss_pred ecCCCcccCCCCCCcccc--------CCcc-------------------cEEEEEEeccc-CCcEEEEEEccCCCEEEEE
Q 002778 286 RIMPSCMRSGSGNHKYDW--------NSSH-------------------VHLYKLHRGIT-SATIQDICFSHYSQWIAIV 337 (882)
Q Consensus 286 di~p~~~~~~sG~~~~d~--------sss~-------------------~~l~~L~RG~t-~a~I~sLaFSPDg~~LAsg 337 (882)
+.++....+.-...+.|. ..+. +.+..+..|.. ....-+.+.||-|.|+-+.
T Consensus 376 ~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYci 455 (508)
T KOG0275|consen 376 HGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCI 455 (508)
T ss_pred cCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEE
Confidence 987642111000000000 0000 11112211211 1134456799999999999
Q ss_pred eCCCeEEEEECCCCCCccccccccCCCCCCcccC
Q 002778 338 SSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFP 371 (882)
Q Consensus 338 S~DGTVhIWdI~~~gg~~~l~~H~~~~~~~~~sp 371 (882)
+.|+...-|.+..++-+.++.-|...+.|..-+|
T Consensus 456 gED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHP 489 (508)
T KOG0275|consen 456 GEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHP 489 (508)
T ss_pred ccCcEEEEEEeecCceeeeeecccccccccccCc
Confidence 9999999999998888888877776666544444
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.4e-11 Score=129.93 Aligned_cols=263 Identities=18% Similarity=0.188 Sum_probs=151.5
Q ss_pred CCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC--CEEEEE-ECCeEEEEECCCCceeEEEe----------cCCCc----
Q 002778 60 PTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVG-LATQIYCFDALTLENKFSVL----------TYPVP---- 121 (882)
Q Consensus 60 p~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~--rlLAV~-~d~qI~IWDa~T~e~l~tL~----------t~p~p---- 121 (882)
+....||++.+|....++. |...|..+.|+. .+||+| +++.|+||++.++.....+. .||.-
T Consensus 85 DD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~ill 164 (399)
T KOG0296|consen 85 DDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILL 164 (399)
T ss_pred CceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEE
Confidence 5678899999999888886 899999999975 677776 58899999999988766663 23320
Q ss_pred --------------c-cCCCCcccccccceeeEEcC---cEE-EEeCCCeEeccC--CCCCCc------cCCCCCCCCCc
Q 002778 122 --------------Q-LAGQGAVGINVGYGPMAVGP---RWL-AYASNTLLLSNS--GRLSPQ------NLTPSGVSPST 174 (882)
Q Consensus 122 --------------~-~~~~~~~g~~~~~g~lAlsp---R~L-Ayss~~v~lwdt--G~vs~q------~lt~~~vs~s~ 174 (882)
. ..++-++|.+.....=.|.| |.+ +|.+.++++|+. |.. .. ++..+.+...
T Consensus 165 AG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p-~~~~~~~e~~~~~~~~~~- 242 (399)
T KOG0296|consen 165 AGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQP-LHKITQAEGLELPCISLN- 242 (399)
T ss_pred eecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCce-eEEecccccCcCCccccc-
Confidence 0 00111111111000111112 222 355567777873 311 11 1111222111
Q ss_pred CCCCCccEEEeeccchhhhhcc-ccccc---cccccccCCCCC--CCCccCCCccccccccccccCCCceEEEEECCCCc
Q 002778 175 SPGGSSLVARYAMEHSKQFAAG-LSKTL---SKYCQELLPDGS--SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA 248 (882)
Q Consensus 175 SP~~GslVA~~A~essk~la~G-liktL---s~~~~~l~pdgs--~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~ 248 (882)
..+.++....++....+... .-|.+ .+....+.+... ...+-+.+....+-++ +.|..||+|.|||+.+.+
T Consensus 243 --~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~-A~G~vdG~i~iyD~a~~~ 319 (399)
T KOG0296|consen 243 --LAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLA-ACGSVDGTIAIYDLAAST 319 (399)
T ss_pred --cccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchh-hcccccceEEEEecccch
Confidence 11222222222221111100 00111 110111111110 0011111111112222 267899999999998766
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEc
Q 002778 249 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS 328 (882)
Q Consensus 249 ~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFS 328 (882)
. +++-.|..+|..|.|.+ -.+|+||..+|. ||.||.++ | +.++++ +||. ..|++++.+
T Consensus 320 ~-R~~c~he~~V~~l~w~~-t~~l~t~c~~g~-v~~wDaRt-------G----------~l~~~y-~GH~-~~Il~f~ls 377 (399)
T KOG0296|consen 320 L-RHICEHEDGVTKLKWLN-TDYLLTACANGK-VRQWDART-------G----------QLKFTY-TGHQ-MGILDFALS 377 (399)
T ss_pred h-heeccCCCceEEEEEcC-cchheeeccCce-EEeeeccc-------c----------ceEEEE-ecCc-hheeEEEEc
Confidence 4 44456999999999999 567888888785 99999975 4 355554 6865 579999999
Q ss_pred cCCCEEEEEeCCCeEEEEECC
Q 002778 329 HYSQWIAIVSSKGTCHVFVLS 349 (882)
Q Consensus 329 PDg~~LAsgS~DGTVhIWdI~ 349 (882)
||.++++++|.|+|.+||.+.
T Consensus 378 ~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 378 PQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred CCCcEEEEecCCCeEEEEecC
Confidence 999999999999999999874
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.1e-12 Score=140.51 Aligned_cols=210 Identities=18% Similarity=0.200 Sum_probs=141.3
Q ss_pred cCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC---CEEEEEECC-eEEEEECCCCceeEEEecCCCcccCCCCcccccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP---RIVAVGLAT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 133 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~---rlLAV~~d~-qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~ 133 (882)
..+.|+|+|+++...++.+. |..+|..+.|.+ ..++.|.|+ .+++||+.+......+.+|..=
T Consensus 88 ~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDY------------ 155 (487)
T KOG0310|consen 88 ESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDY------------ 155 (487)
T ss_pred CcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcce------------
Confidence 34889999999988888887 889999999987 356666665 4799999999876677777651
Q ss_pred cceeeEEcC--c-EEEEeC--CCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhcccccccccccccc
Q 002778 134 GYGPMAVGP--R-WLAYAS--NTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQEL 208 (882)
Q Consensus 134 ~~g~lAlsp--R-~LAyss--~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l 208 (882)
....++.| + .++..+ ..+++|++-.. + ..++.+-. | |
T Consensus 156 -VR~g~~~~~~~hivvtGsYDg~vrl~DtR~~-----~-------------~~v~elnh--------g--------~--- 197 (487)
T KOG0310|consen 156 -VRCGDISPANDHIVVTGSYDGKVRLWDTRSL-----T-------------SRVVELNH--------G--------C--- 197 (487)
T ss_pred -eEeeccccCCCeEEEecCCCceEEEEEeccC-----C-------------ceeEEecC--------C--------C---
Confidence 23455555 3 444444 36899986211 0 01111000 0 0
Q ss_pred CCCCCCCCccCCCccccccccccccCCCceEEEEECCCCc-EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEec
Q 002778 209 LPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA-IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI 287 (882)
Q Consensus 209 ~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~-~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi 287 (882)
| ...+.+-+.+..++.++ ...|+|||+.+|. .+..+..|...|+||+|..+++.|.|||.|++ ++|||+
T Consensus 198 -p---Ve~vl~lpsgs~iasAg-----Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~-VKVfd~ 267 (487)
T KOG0310|consen 198 -P---VESVLALPSGSLIASAG-----GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH-VKVFDT 267 (487)
T ss_pred -c---eeeEEEcCCCCEEEEcC-----CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccc-eEEEEc
Confidence 0 00011111222333221 2479999999654 45555569999999999999999999999887 899997
Q ss_pred CCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEEC
Q 002778 288 MPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 348 (882)
Q Consensus 288 ~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI 348 (882)
... +.++.+ + -+++|.+|+.|||++.+++|-.+|.+-+=+.
T Consensus 268 t~~-----------------Kvv~s~--~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 268 TNY-----------------KVVHSW--K-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred cce-----------------EEEEee--e-cccceeeEEecCCCceEEEecccceeeeehh
Confidence 421 233332 2 2468999999999999999999999877533
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-11 Score=137.13 Aligned_cols=234 Identities=15% Similarity=0.192 Sum_probs=148.5
Q ss_pred cCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcCC--EEEEE-ECCeEEEEECCCCceeEEEecCCCcccCCCCccccccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSPR--IVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 134 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~r--lLAV~-~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~ 134 (882)
.++++-++|-.+++.+.+|+ |.-.|.+|.+++. .++++ .+..|+||.+.+-.....+..|..|.
T Consensus 239 ~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V------------ 306 (506)
T KOG0289|consen 239 EDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPV------------ 306 (506)
T ss_pred CCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccc------------
Confidence 46788899999999999998 7778999999984 44444 35679999987766554444444431
Q ss_pred ceeeEEcC--cEEEEeCCC-eE-eccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccch-hhhhccccccccccccccC
Q 002778 135 YGPMAVGP--RWLAYASNT-LL-LSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHS-KQFAAGLSKTLSKYCQELL 209 (882)
Q Consensus 135 ~g~lAlsp--R~LAyss~~-v~-lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~ess-k~la~GliktLs~~~~~l~ 209 (882)
..+.+.| .||-.+++. -. +.+. ..|+.+.....+.+ ..+
T Consensus 307 -~~ls~h~tgeYllsAs~d~~w~Fsd~-------------------~~g~~lt~vs~~~s~v~~---------------- 350 (506)
T KOG0289|consen 307 -TGLSLHPTGEYLLSASNDGTWAFSDI-------------------SSGSQLTVVSDETSDVEY---------------- 350 (506)
T ss_pred -eeeeeccCCcEEEEecCCceEEEEEc-------------------cCCcEEEEEeecccccee----------------
Confidence 1222323 555444432 11 1110 01111111111100 000
Q ss_pred CCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCC
Q 002778 210 PDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP 289 (882)
Q Consensus 210 pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p 289 (882)
.+..+-+++-.. ++|..||.|+|||+.++..++.|.+|+++|.+|+|+-+|-+|||+..||. |++||++.
T Consensus 351 -----ts~~fHpDgLif----gtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~-V~lwDLRK 420 (506)
T KOG0289|consen 351 -----TSAAFHPDGLIF----GTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGS-VKLWDLRK 420 (506)
T ss_pred -----EEeeEcCCceEE----eccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCe-EEEEEehh
Confidence 011122222222 26788999999999999999999999999999999999999999999776 99999964
Q ss_pred CcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCC--CCCccccccccCCCCCC
Q 002778 290 SCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP--FGGDSGFQTLSSQGGDP 367 (882)
Q Consensus 290 ~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~--~gg~~~l~~H~~~~~~~ 367 (882)
. +.+.++.-. ....|.+++|-+.|++|++++.|=+|++++-.+ ..+...+..|...+++.
T Consensus 421 l-----------------~n~kt~~l~-~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v 482 (506)
T KOG0289|consen 421 L-----------------KNFKTIQLD-EKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGV 482 (506)
T ss_pred h-----------------cccceeecc-ccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhccccccee
Confidence 1 112222111 122589999999999999999988888887432 23344455555444443
Q ss_pred c
Q 002778 368 Y 368 (882)
Q Consensus 368 ~ 368 (882)
.
T Consensus 483 ~ 483 (506)
T KOG0289|consen 483 R 483 (506)
T ss_pred e
Confidence 3
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.8e-11 Score=130.97 Aligned_cols=239 Identities=17% Similarity=0.148 Sum_probs=149.4
Q ss_pred EecCCCCCCCCCcccccccccccCccCCCCCccc---ccCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC---CEEEEE
Q 002778 24 VAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCV---NSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP---RIVAVG 96 (882)
Q Consensus 24 v~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~---rlLAV~ 96 (882)
|.+|..+..- .. ||.|+|-+...... +|.+ ..+++|+.||+++|++++.++ |.+-|.++..++ .+|.++
T Consensus 76 v~gdceN~~~--lk-gHsgAVM~l~~~~d-~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~Sg 151 (338)
T KOG0265|consen 76 VYGDCENFWV--LK-GHSGAVMELHGMRD-GSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSG 151 (338)
T ss_pred ccccccceee--ec-cccceeEeeeeccC-CCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEec
Confidence 4566665533 22 78888844333322 3333 468999999999999999988 556666666443 566666
Q ss_pred E-CCeEEEEECCCCceeEEEec-CCCcccCCCCcccccccceeeEEcC---c-EEEEeCCCeEeccCCCCCCccCCCCCC
Q 002778 97 L-ATQIYCFDALTLENKFSVLT-YPVPQLAGQGAVGINVGYGPMAVGP---R-WLAYASNTLLLSNSGRLSPQNLTPSGV 170 (882)
Q Consensus 97 ~-d~qI~IWDa~T~e~l~tL~t-~p~p~~~~~~~~g~~~~~g~lAlsp---R-~LAyss~~v~lwdtG~vs~q~lt~~~v 170 (882)
. |+++++||+++.+.++++.. ++. .+++|.- + ..+--++.+++|+.-+..
T Consensus 152 sdD~t~kl~D~R~k~~~~t~~~kyql---------------tAv~f~d~s~qv~sggIdn~ikvWd~r~~d--------- 207 (338)
T KOG0265|consen 152 SDDGTLKLWDIRKKEAIKTFENKYQL---------------TAVGFKDTSDQVISGGIDNDIKVWDLRKND--------- 207 (338)
T ss_pred CCCceEEEEeecccchhhccccceeE---------------EEEEecccccceeeccccCceeeeccccCc---------
Confidence 5 57899999997776666531 111 1222211 1 112224567888741110
Q ss_pred CCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECC----C
Q 002778 171 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV----T 246 (882)
Q Consensus 171 s~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~----s 246 (882)
+..+-+...| ++++.. +.+.| ..+. +-+.|.+|++||+. .
T Consensus 208 --------~~~~lsGh~D-----------tIt~ls--ls~~g-----------s~ll----snsMd~tvrvwd~rp~~p~ 251 (338)
T KOG0265|consen 208 --------GLYTLSGHAD-----------TITGLS--LSRYG-----------SFLL----SNSMDNTVRVWDVRPFAPS 251 (338)
T ss_pred --------ceEEeecccC-----------ceeeEE--eccCC-----------Cccc----cccccceEEEEEecccCCC
Confidence 0000000000 111100 11112 1110 23578999999986 3
Q ss_pred CcEEEEeccCCC----CeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcE
Q 002778 247 RAIISQFKAHTS----PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATI 322 (882)
Q Consensus 247 ~~~v~~f~aH~s----pIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I 322 (882)
.+++..|.+|.. .....+++|+++.+..+|.| +.+.|||... ...+|+|. |+. ..|
T Consensus 252 ~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~d-r~vyvwd~~~-----------------r~~lyklp-Gh~-gsv 311 (338)
T KOG0265|consen 252 QRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSAD-RFVYVWDTTS-----------------RRILYKLP-GHY-GSV 311 (338)
T ss_pred CceEEEeecchhhhhhhcceeeccCCCCcccccccc-ceEEEeeccc-----------------ccEEEEcC-Ccc-eeE
Confidence 467899988754 35567899999999888885 5688999842 14788885 665 479
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEE
Q 002778 323 QDICFSHYSQWIAIVSSKGTCHVF 346 (882)
Q Consensus 323 ~sLaFSPDg~~LAsgS~DGTVhIW 346 (882)
..++|.|...+|.++++|.||.+=
T Consensus 312 n~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 312 NEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred EEeeecCCCcEEEEeccCceeEee
Confidence 999999999999999999999863
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.8e-12 Score=142.67 Aligned_cols=180 Identities=16% Similarity=0.179 Sum_probs=137.6
Q ss_pred cCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC--CEEEEEE-CCeEEEEECCCCceeEEEecCCCcccCCCCccccccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 134 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~--rlLAV~~-d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~ 134 (882)
.+++|+|||..-.+.-..|. |.-.|.+|++.| .+||++. |+.|++||.+++.++.++..|.+.
T Consensus 200 dDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKnt------------- 266 (464)
T KOG0284|consen 200 DDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNT------------- 266 (464)
T ss_pred CCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccce-------------
Confidence 57999999999988888887 666799999988 5777776 456999999999999999877662
Q ss_pred ceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCC
Q 002778 135 YGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS 214 (882)
Q Consensus 135 ~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~ 214 (882)
.+++ .|..+.
T Consensus 267 --Vl~~-----~f~~n~--------------------------------------------------------------- 276 (464)
T KOG0284|consen 267 --VLAV-----KFNPNG--------------------------------------------------------------- 276 (464)
T ss_pred --EEEE-----EEcCCC---------------------------------------------------------------
Confidence 2221 111110
Q ss_pred CCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCC-CCEEEEEEcCCCEEEEEecCCCccc
Q 002778 215 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMR 293 (882)
Q Consensus 215 s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPd-GtlLATAS~dGt~IrVWdi~p~~~~ 293 (882)
.+++ +++.|..++|+|+.+.+.+..+++|+..|.+++++|= -.+|+|++.||. |..|.+-..
T Consensus 277 ---------N~Ll----t~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgs-vvh~~v~~~--- 339 (464)
T KOG0284|consen 277 ---------NWLL----TGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGS-VVHWVVGLE--- 339 (464)
T ss_pred ---------CeeE----EccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCc-eEEEecccc---
Confidence 0111 3567889999999999999999999999999999994 468889999886 789988411
Q ss_pred CCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCC
Q 002778 294 SGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 353 (882)
Q Consensus 294 ~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg 353 (882)
..+-.+.-++. ..|++++|.|=|..||+||.|.|++.|.-...+.
T Consensus 340 --------------~p~~~i~~AHd-~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp~d 384 (464)
T KOG0284|consen 340 --------------EPLGEIPPAHD-GEIWSLAYHPLGHILATGSNDRTVRFWTRNRPGD 384 (464)
T ss_pred --------------ccccCCCcccc-cceeeeeccccceeEeecCCCcceeeeccCCCCC
Confidence 12233323333 3699999999999999999999999998765443
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.4e-11 Score=126.73 Aligned_cols=112 Identities=13% Similarity=0.149 Sum_probs=88.6
Q ss_pred cCCCceEEEEECCCC--cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEE
Q 002778 233 MDNAGIVVVKDFVTR--AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 310 (882)
Q Consensus 233 gs~dG~V~VWDl~s~--~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l 310 (882)
|+.|+++.||.-..+ +++.+|.+|...|-+++||++|.+|||+|. ++.+-||.+.. + ..+...
T Consensus 79 aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSR-DKSVWiWe~de-------d-------dEfec~ 143 (312)
T KOG0645|consen 79 ASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSR-DKSVWIWEIDE-------D-------DEFECI 143 (312)
T ss_pred eeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeC-CCeEEEEEecC-------C-------CcEEEE
Confidence 456778888876644 689999999999999999999999999998 55689999952 1 123345
Q ss_pred EEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCC---CCcccccccc
Q 002778 311 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF---GGDSGFQTLS 361 (882)
Q Consensus 311 ~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~---gg~~~l~~H~ 361 (882)
..| .+|++ .|.-+.|.|.-..|+++|-|.||++|+-.+. .+..++.+|+
T Consensus 144 aVL-~~Htq-DVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~ 195 (312)
T KOG0645|consen 144 AVL-QEHTQ-DVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHE 195 (312)
T ss_pred eee-ccccc-cccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCcc
Confidence 555 35554 6899999999999999999999999988752 2356778886
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.3e-11 Score=142.08 Aligned_cols=106 Identities=16% Similarity=0.061 Sum_probs=88.5
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEE
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~ 311 (882)
.|+..+.+++||..+.+.+..|++|+..|.+|..++||+.+.|||.||+ |||||+.- .+++.
T Consensus 188 sGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgt-IrlWdLgq-----------------QrCl~ 249 (735)
T KOG0308|consen 188 SGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGT-IRLWDLGQ-----------------QRCLA 249 (735)
T ss_pred ecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCce-EEeeeccc-----------------cceee
Confidence 3567789999999999999999999999999999999999999999886 99999931 14555
Q ss_pred EEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCcccc
Q 002778 312 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGF 357 (882)
Q Consensus 312 ~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l 357 (882)
++. -++ ..||++.-+|+=+.+-+|+.||.|..=|+..+.....+
T Consensus 250 T~~-vH~-e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tli 293 (735)
T KOG0308|consen 250 TYI-VHK-EGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLI 293 (735)
T ss_pred eEE-ecc-CceEEEeeCCCcceEEecCCCCcEEecccCCchhheEe
Confidence 553 333 35999999999999999999999999899876444433
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.6e-12 Score=139.11 Aligned_cols=174 Identities=16% Similarity=0.242 Sum_probs=130.5
Q ss_pred cCCeEEEEECCCCeEEEEEEcCCcEEEEEEcCCEEEEE-ECCeEEEEECCCCceeEEEecCCCcccCCCCccccccccee
Q 002778 59 SPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGP 137 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLkf~s~V~sV~~S~rlLAV~-~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g~ 137 (882)
.+.+||+||+.++.|.+++-+.+.+.+|.++...++++ +|++|++||+++..+..++..+.. +..
T Consensus 281 ~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~--------------vtS 346 (459)
T KOG0288|consen 281 ADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGGR--------------VTS 346 (459)
T ss_pred ccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEeccCCceeeEeecCcc--------------eee
Confidence 58999999999999999998899999999997777776 478899999999888776632211 112
Q ss_pred eEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCCCCc
Q 002778 138 MAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPV 217 (882)
Q Consensus 138 lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~s~~ 217 (882)
+.+++ ++-.+
T Consensus 347 l~ls~----------------------------------~g~~l------------------------------------ 356 (459)
T KOG0288|consen 347 LDLSM----------------------------------DGLEL------------------------------------ 356 (459)
T ss_pred Eeecc----------------------------------CCeEE------------------------------------
Confidence 22111 00000
Q ss_pred cCCCccccccccccccCCCceEEEEECCCCcEEEEeccC----CCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCccc
Q 002778 218 SPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH----TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR 293 (882)
Q Consensus 218 S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH----~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~ 293 (882)
+ +...|.++.+.|+.+..+...|.|- .+..+.+.|||+|.|+|+||.||. |.||++..
T Consensus 357 ----------L---sssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgs-v~iW~v~t---- 418 (459)
T KOG0288|consen 357 ----------L---SSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGS-VYIWSVFT---- 418 (459)
T ss_pred ----------e---eecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCc-EEEEEccC----
Confidence 0 1134667888888888877777652 234789999999999999999887 89999964
Q ss_pred CCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEE
Q 002778 294 SGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV 347 (882)
Q Consensus 294 ~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWd 347 (882)
| +....+.....++-|.+++|+|-|.+|++++.++++.||.
T Consensus 419 ---g----------KlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 419 ---G----------KLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ---c----------eEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 3 3555555444444699999999999999999999999993
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2e-11 Score=133.72 Aligned_cols=176 Identities=16% Similarity=0.183 Sum_probs=129.0
Q ss_pred ccCCeEEEEEC-------------------------CCCeEEEEEE-cCCcEEEEEEcCC--EEEEEECCeEEEEECCCC
Q 002778 58 NSPTAVRFYSF-------------------------QSHCYEHVLR-FRSSVCMVRCSPR--IVAVGLATQIYCFDALTL 109 (882)
Q Consensus 58 ~sp~tVrlWDl-------------------------kTG~~V~tLk-f~s~V~sV~~S~r--lLAV~~d~qI~IWDa~T~ 109 (882)
..+++|+||+. .++..+-+|. |...|.+|.++.. ...++.|.+|+.||+.++
T Consensus 212 S~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg 291 (423)
T KOG0313|consen 212 SWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETG 291 (423)
T ss_pred cccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecc
Confidence 36899999992 2344555665 8999999999873 445677999999999999
Q ss_pred ceeEEEecCCCcccCCCCcccccccceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccc
Q 002778 110 ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEH 189 (882)
Q Consensus 110 e~l~tL~t~p~p~~~~~~~~g~~~~~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~es 189 (882)
.+.-++.+... +..+ +|.+..
T Consensus 292 ~~~~~~~~~ks--------------l~~i-------~~~~~~-------------------------------------- 312 (423)
T KOG0313|consen 292 GLKSTLTTNKS--------------LNCI-------SYSPLS-------------------------------------- 312 (423)
T ss_pred cceeeeecCcc--------------eeEe-------eccccc--------------------------------------
Confidence 98888765322 1222 222110
Q ss_pred hhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCc---EEEEeccCCCCeEEEEEC
Q 002778 190 SKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA---IISQFKAHTSPISALCFD 266 (882)
Q Consensus 190 sk~la~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~---~v~~f~aH~spIsaLaFS 266 (882)
+.++ +|+.|..++|||.+++. +..+|.+|+..|.++.++
T Consensus 313 ----------------------------------~Ll~----~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkws 354 (423)
T KOG0313|consen 313 ----------------------------------KLLA----SGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWS 354 (423)
T ss_pred ----------------------------------ceee----ecCCCCceeecCCCCCCCceeEEeeecchhhhhheecC
Confidence 0000 24567789999988753 457899999999999999
Q ss_pred CCCC-EEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEE
Q 002778 267 PSGT-LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHV 345 (882)
Q Consensus 267 PdGt-lLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhI 345 (882)
|... +|+++|.|++ +++||++.. ...+|.+.+. +..|.++.|+ ++..|++|+.|.+++|
T Consensus 355 p~~~~~~~S~S~D~t-~klWDvRS~----------------k~plydI~~h--~DKvl~vdW~-~~~~IvSGGaD~~l~i 414 (423)
T KOG0313|consen 355 PTNEFQLVSGSYDNT-VKLWDVRST----------------KAPLYDIAGH--NDKVLSVDWN-EGGLIVSGGADNKLRI 414 (423)
T ss_pred CCCceEEEEEecCCe-EEEEEeccC----------------CCcceeeccC--CceEEEEecc-CCceEEeccCcceEEE
Confidence 9775 6788998765 899999641 1278998743 4589999996 5779999999999999
Q ss_pred EECCC
Q 002778 346 FVLSP 350 (882)
Q Consensus 346 WdI~~ 350 (882)
|.-.+
T Consensus 415 ~~~~~ 419 (423)
T KOG0313|consen 415 FKGSP 419 (423)
T ss_pred ecccc
Confidence 97544
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.3e-11 Score=126.29 Aligned_cols=217 Identities=16% Similarity=0.184 Sum_probs=139.3
Q ss_pred cccCCeEEEEECCCCeEEEEEEcCCcEEEEEEcC--CEEEEEE-CCeEEEEECCCCceeEEEecCCCcccCCCCcccccc
Q 002778 57 VNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 133 (882)
Q Consensus 57 ~~sp~tVrlWDlkTG~~V~tLkf~s~V~sV~~S~--rlLAV~~-d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~ 133 (882)
++.+++|++||.+++++++.+.-...=..+.++| ..++++. ++.|-+.|+++.+...+..- +..
T Consensus 83 as~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e------------ 149 (313)
T KOG1407|consen 83 ASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF-KFE------------ 149 (313)
T ss_pred ecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcc-cce------------
Confidence 3578999999999999999998665544567776 5666665 77899999998765544321 000
Q ss_pred cceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCC
Q 002778 134 GYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS 213 (882)
Q Consensus 134 ~~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs 213 (882)
.+-+++.. ++.+-+-..|--..+.|.-|..-+. +++..|. .+
T Consensus 150 -~ne~~w~~------~nd~Fflt~GlG~v~ILsypsLkpv-------------------------~si~AH~------sn 191 (313)
T KOG1407|consen 150 -VNEISWNN------SNDLFFLTNGLGCVEILSYPSLKPV-------------------------QSIKAHP------SN 191 (313)
T ss_pred -eeeeeecC------CCCEEEEecCCceEEEEeccccccc-------------------------cccccCC------cc
Confidence 01111110 1111111111000011111000000 0111110 01
Q ss_pred CCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCccc
Q 002778 214 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR 293 (882)
Q Consensus 214 ~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~ 293 (882)
-..+.++|.+++.+ +|+.|-.|-+||+...-++..|.-|.-||..|.||.||++||+||. ++.|-|=++.+
T Consensus 192 CicI~f~p~GryfA----~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSE-Dh~IDIA~vet---- 262 (313)
T KOG1407|consen 192 CICIEFDPDGRYFA----TGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASE-DHFIDIAEVET---- 262 (313)
T ss_pred eEEEEECCCCceEe----eccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCc-cceEEeEeccc----
Confidence 12345677788866 6788999999999999999999999999999999999999999998 56777766654
Q ss_pred CCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCC---------CeEEEEECC
Q 002778 294 SGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK---------GTCHVFVLS 349 (882)
Q Consensus 294 ~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~D---------GTVhIWdI~ 349 (882)
| .+++++. +.++-..|||.|....||-+.+| |+|+||-+.
T Consensus 263 ---G----------d~~~eI~---~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 263 ---G----------DRVWEIP---CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred ---C----------CeEEEee---ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence 4 4677764 34567899999999999988765 566666543
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3e-11 Score=142.35 Aligned_cols=103 Identities=17% Similarity=0.284 Sum_probs=85.0
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEE
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 310 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSP-dGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l 310 (882)
+++.|.+|+||++....+++.|. |.+-|+|++|+| |.+++++||.||. ||||+|... ....-
T Consensus 385 SSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~K-vRiWsI~d~---------------~Vv~W 447 (712)
T KOG0283|consen 385 SSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGK-VRLWSISDK---------------KVVDW 447 (712)
T ss_pred eccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccc-eEEeecCcC---------------eeEee
Confidence 56899999999999999999996 999999999999 7799999999886 999999531 01111
Q ss_pred EEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccc
Q 002778 311 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSG 356 (882)
Q Consensus 311 ~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~ 356 (882)
+.+ ...|++++|+|||++.++|+.+|.|++|+.....-...
T Consensus 448 ~Dl-----~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~ 488 (712)
T KOG0283|consen 448 NDL-----RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSD 488 (712)
T ss_pred hhh-----hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEe
Confidence 222 24699999999999999999999999999876544433
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-12 Score=151.90 Aligned_cols=120 Identities=17% Similarity=0.289 Sum_probs=99.8
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEE
Q 002778 233 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 312 (882)
Q Consensus 233 gs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~ 312 (882)
|.++|+|++||++..+.+.+|.+|..++..|.|+|-|.+.|++|.|+ .+++||++.- | +.+.
T Consensus 88 gsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdt-d~~iwD~Rk~------G-----------c~~~ 149 (825)
T KOG0267|consen 88 GSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDT-DLKIWDIRKK------G-----------CSHT 149 (825)
T ss_pred cccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccc-cceehhhhcc------C-----------ceee
Confidence 56789999999999999999999999999999999999999999965 5999999631 3 3343
Q ss_pred EEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccccccccCCCCCCcccCC
Q 002778 313 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPV 372 (882)
Q Consensus 313 L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~H~~~~~~~~~sp~ 372 (882)
+ +| +...|..+.|+|||+|++.+++|.+++|||+..+.-...|.+|...+...-++|.
T Consensus 150 ~-~s-~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~ 207 (825)
T KOG0267|consen 150 Y-KS-HTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPL 207 (825)
T ss_pred e-cC-CcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCch
Confidence 3 45 4457999999999999999999999999999887777788888766554445553
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.3e-11 Score=130.45 Aligned_cols=245 Identities=15% Similarity=0.127 Sum_probs=151.1
Q ss_pred cCCeEEEEECCCCeEEEEEE-cCCcEEEEEE---cCC---EEEEEECCeEEEEECCCCceeEE----EecCCCcccCCCC
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRC---SPR---IVAVGLATQIYCFDALTLENKFS----VLTYPVPQLAGQG 127 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~---S~r---lLAV~~d~qI~IWDa~T~e~l~t----L~t~p~p~~~~~~ 127 (882)
+++++|+||. .|++++++. |.++|.+++. +.. +|..+.|+++.+|-...++..-. -.+|..
T Consensus 123 YDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~------- 194 (423)
T KOG0313|consen 123 YDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKR------- 194 (423)
T ss_pred cCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhccccc-------
Confidence 6899999997 689999987 8899998775 222 44456678899998776653221 123332
Q ss_pred cccccccceeeEEcC---cEEEEe-CCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhcc------c
Q 002778 128 AVGINVGYGPMAVGP---RWLAYA-SNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAG------L 197 (882)
Q Consensus 128 ~~g~~~~~g~lAlsp---R~LAys-s~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~G------l 197 (882)
....+++.+ |++.-+ +..+.+|+...-.-..+.. . . .+.+.++...+ .
T Consensus 195 ------~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~--~------s--------~~rrk~~~~~~~~~~r~P 252 (423)
T KOG0313|consen 195 ------SVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELES--S------S--------NRRRKKQKREKEGGTRTP 252 (423)
T ss_pred ------ceeEEEecCCCCeEEeecccceeeecccCCCccccccc--c------c--------hhhhhhhhhhhcccccCc
Confidence 223444433 443322 4578899821000000000 0 0 01111111111 0
Q ss_pred cccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEc
Q 002778 198 SKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV 277 (882)
Q Consensus 198 iktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~ 277 (882)
+-++.+|.... +.+.++. + .+ ..+++.|-+|++||+.++..+..+.+. .++.++..+|...+||+||.
T Consensus 253 ~vtl~GHt~~V----s~V~w~d-~--~v----~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll~~gss 320 (423)
T KOG0313|consen 253 LVTLEGHTEPV----SSVVWSD-A--TV----IYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLLASGSS 320 (423)
T ss_pred eEEecccccce----eeEEEcC-C--Cc----eEeecccceEEEEEeecccceeeeecC-cceeEeecccccceeeecCC
Confidence 11333332110 0111111 1 11 115689999999999999988887754 68999999999999999999
Q ss_pred CCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCE-EEEEeCCCeEEEEECCCCCC-cc
Q 002778 278 YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW-IAIVSSKGTCHVFVLSPFGG-DS 355 (882)
Q Consensus 278 dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~-LAsgS~DGTVhIWdI~~~gg-~~ 355 (882)
|- .|||||-+. +.| + ...+.| -||.+ .|.++.|||-..+ |+++|.|+|+++||+....+ ..
T Consensus 321 dr-~irl~DPR~-----~~g--------s-~v~~s~-~gH~n-wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~ply 383 (423)
T KOG0313|consen 321 DR-HIRLWDPRT-----GDG--------S-VVSQSL-IGHKN-WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLY 383 (423)
T ss_pred CC-ceeecCCCC-----CCC--------c-eeEEee-ecchh-hhhheecCCCCceEEEEEecCCeEEEEEeccCCCcce
Confidence 65 599999653 122 1 223344 47665 8999999997754 78899999999999988764 45
Q ss_pred ccccccC
Q 002778 356 GFQTLSS 362 (882)
Q Consensus 356 ~l~~H~~ 362 (882)
.+.+|+.
T Consensus 384 dI~~h~D 390 (423)
T KOG0313|consen 384 DIAGHND 390 (423)
T ss_pred eeccCCc
Confidence 7888864
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.6e-12 Score=150.38 Aligned_cols=147 Identities=14% Similarity=0.119 Sum_probs=108.5
Q ss_pred CCceEEEEECCC------------CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccc
Q 002778 235 NAGIVVVKDFVT------------RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYD 302 (882)
Q Consensus 235 ~dG~V~VWDl~s------------~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d 302 (882)
.||.++||.... .+.+.++..|.+.|+|+.|+|||++||+||+| ..|.||+-.+......-|..+..
T Consensus 35 ~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD-~~v~iW~~~~~~~~~~fgs~g~~ 113 (942)
T KOG0973|consen 35 LDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD-RLVMIWERAEIGSGTVFGSTGGA 113 (942)
T ss_pred ccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc-ceEEEeeecccCCcccccccccc
Confidence 678888998753 24567788899999999999999999999985 57999998641000000100011
Q ss_pred cCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccccccccCCCCCCcccCCCCCCcccCCC
Q 002778 303 WNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPVLSLPWWCTSS 382 (882)
Q Consensus 303 ~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~H~~~~~~~~~sp~~~lpw~~~s~ 382 (882)
-.-+.+..+...|||+ ..|.+|+||||+.+||++|.|++|+||+..+++....+++|...+.| +.|+|...
T Consensus 114 ~~vE~wk~~~~l~~H~-~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKG--------vs~DP~Gk 184 (942)
T KOG0973|consen 114 KNVESWKVVSILRGHD-SDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKG--------VSWDPIGK 184 (942)
T ss_pred cccceeeEEEEEecCC-CccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccc--------eEECCccC
Confidence 1112345555668865 57999999999999999999999999999999888889999854444 57777788
Q ss_pred CcccccccC
Q 002778 383 GISEQQCVL 391 (882)
Q Consensus 383 ~~~~Q~~~~ 391 (882)
|...|.-+.
T Consensus 185 y~ASqsdDr 193 (942)
T KOG0973|consen 185 YFASQSDDR 193 (942)
T ss_pred eeeeecCCc
Confidence 877775444
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3e-11 Score=141.92 Aligned_cols=171 Identities=18% Similarity=0.217 Sum_probs=128.4
Q ss_pred cCCeEEEEECCCCeEEEEE----EcCCcEEEEEEcC--CEEE-EEECCeEEEEECCCCceeEEEecCCCcccCCCCcccc
Q 002778 59 SPTAVRFYSFQSHCYEHVL----RFRSSVCMVRCSP--RIVA-VGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGI 131 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tL----kf~s~V~sV~~S~--rlLA-V~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~ 131 (882)
+.++|-+|++++|-..+++ -|..+|.+|+++. ++++ .+.++-+++||..+...+.++.-....
T Consensus 468 S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~---------- 537 (910)
T KOG1539|consen 468 SKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSI---------- 537 (910)
T ss_pred cCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCc----------
Confidence 5799999999999999998 3889999999975 3444 456778999999887766666421110
Q ss_pred cccceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCC
Q 002778 132 NVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPD 211 (882)
Q Consensus 132 ~~~~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pd 211 (882)
..+.|.-. .+.
T Consensus 538 -----------~~iv~hr~---------------------------s~l------------------------------- 548 (910)
T KOG1539|consen 538 -----------TGIVYHRV---------------------------SDL------------------------------- 548 (910)
T ss_pred -----------ceeeeeeh---------------------------hhh-------------------------------
Confidence 00111100 000
Q ss_pred CCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCc
Q 002778 212 GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSC 291 (882)
Q Consensus 212 gs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~ 291 (882)
++ .+..|-.|+|+|..+.++++.|.+|...|++++|||||++|++|+.|++ ||+||+.+
T Consensus 549 --------------~a----~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~t-Ir~wDlpt-- 607 (910)
T KOG1539|consen 549 --------------LA----IALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDST-IRTWDLPT-- 607 (910)
T ss_pred --------------hh----hhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCc-EEEEeccC--
Confidence 00 1234567999999999999999999999999999999999999999876 99999954
Q ss_pred ccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCC-CeEEEEE
Q 002778 292 MRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK-GTCHVFV 347 (882)
Q Consensus 292 ~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~D-GTVhIWd 347 (882)
| ..+--+. ...+..+|+|||+|.+||++..| .-|.+|.
T Consensus 608 -----~----------~lID~~~---vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 608 -----G----------TLIDGLL---VDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred -----c----------ceeeeEe---cCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 3 2343332 23578999999999999999988 5699995
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.3e-11 Score=136.25 Aligned_cols=200 Identities=17% Similarity=0.233 Sum_probs=137.7
Q ss_pred CCeEEEEECCCCeEEEEEEc---CCcEEE-EEEc---C-CEEEEEECCeEEEEECCCCceeEEEecCCCcccCCCCcccc
Q 002778 60 PTAVRFYSFQSHCYEHVLRF---RSSVCM-VRCS---P-RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGI 131 (882)
Q Consensus 60 p~tVrlWDlkTG~~V~tLkf---~s~V~s-V~~S---~-rlLAV~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~ 131 (882)
+++++||+-+.++++.+..| .+-|-. +++- + ++++.+.|..|.+|...+.+.+++|.+|...
T Consensus 34 d~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~sn---------- 103 (745)
T KOG0301|consen 34 DGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSN---------- 103 (745)
T ss_pred CCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccc----------
Confidence 68899999988887775443 333332 4443 2 3444456889999999999999999998762
Q ss_pred cccceeeEEcC----cEEEEe-CCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhcccccccccccc
Q 002778 132 NVGYGPMAVGP----RWLAYA-SNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQ 206 (882)
Q Consensus 132 ~~~~g~lAlsp----R~LAys-s~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~ 206 (882)
.++++- ..|.-+ +.++++|..|.+.. .+.+ |
T Consensus 104 -----VC~ls~~~~~~~iSgSWD~TakvW~~~~l~~-~l~g------------------------------------H-- 139 (745)
T KOG0301|consen 104 -----VCSLSIGEDGTLISGSWDSTAKVWRIGELVY-SLQG------------------------------------H-- 139 (745)
T ss_pred -----eeeeecCCcCceEecccccceEEecchhhhc-ccCC------------------------------------c--
Confidence 233321 322211 34678886443210 0100 0
Q ss_pred ccCCCCCCCCccCCCccccccccc---cccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEE
Q 002778 207 ELLPDGSSSPVSPNSVWKVGRHAG---ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNIN 283 (882)
Q Consensus 207 ~l~pdgs~s~~S~ss~~k~~~la~---~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~Ir 283 (882)
.. +-|.+..++. .+|+.|.+|++|.- ++.+++|.+|++-|..|++=|++. +++++.||. |+
T Consensus 140 -------~a-----sVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~-Ir 203 (745)
T KOG0301|consen 140 -------TA-----SVWAVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGS-IR 203 (745)
T ss_pred -------ch-----heeeeeecCCCcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCCce-EE
Confidence 00 0011111100 16788999999976 788999999999999999998865 668999885 99
Q ss_pred EEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECC
Q 002778 284 IFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 349 (882)
Q Consensus 284 VWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~ 349 (882)
+|++. | ..+++.. ||+ +-|++|+-.++++.|++++.|+|++||+..
T Consensus 204 ~w~~~--------g----------e~l~~~~-ght-n~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 204 LWDLD--------G----------EVLLEMH-GHT-NFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred EEecc--------C----------ceeeeee-ccc-eEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 99993 3 3666654 666 479999988999999999999999999986
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.8e-11 Score=136.69 Aligned_cols=179 Identities=18% Similarity=0.285 Sum_probs=130.9
Q ss_pred CCeEEEEECCCCeEEEEEEcCCcEEEEEEcC---CEEEEEECCeEEEEECCCCceeEEEecCCCcccCCCCcccccccce
Q 002778 60 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP---RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 136 (882)
Q Consensus 60 p~tVrlWDlkTG~~V~tLkf~s~V~sV~~S~---rlLAV~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g 136 (882)
.+-|.|-..+|++.+.+++-.+.|.++.|+. .+++++.+++|++||++...+++++..... . ...
T Consensus 324 ~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~--------v----~gt 391 (514)
T KOG2055|consen 324 NGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGS--------V----HGT 391 (514)
T ss_pred CceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCc--------c----cee
Confidence 3778999999999999999999999999975 577778889999999999988888753211 0 001
Q ss_pred eeEE--cCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCC
Q 002778 137 PMAV--GPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS 214 (882)
Q Consensus 137 ~lAl--spR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~ 214 (882)
.+++ .++|||
T Consensus 392 s~~~S~ng~ylA-------------------------------------------------------------------- 403 (514)
T KOG2055|consen 392 SLCISLNGSYLA-------------------------------------------------------------------- 403 (514)
T ss_pred eeeecCCCceEE--------------------------------------------------------------------
Confidence 1221 112222
Q ss_pred CCccCCCccccccccccccCCCceEEEEECCC------CcEEEEeccCCCCeEEEEECCCCCEEEEEEcC-CCEEEEEec
Q 002778 215 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT------RAIISQFKAHTSPISALCFDPSGTLLVTASVY-GNNINIFRI 287 (882)
Q Consensus 215 s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s------~~~v~~f~aH~spIsaLaFSPdGtlLATAS~d-Gt~IrVWdi 287 (882)
+|+..|.|.|||..+ .+++..+..-+..|+.|+|+||+.+||.||.. ...+|+-.+
T Consensus 404 -----------------~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHv 466 (514)
T KOG2055|consen 404 -----------------TGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHV 466 (514)
T ss_pred -----------------eccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEec
Confidence 345678888888653 46777787788999999999999999999863 334788777
Q ss_pred CCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 288 MPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 288 ~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
|++ +...+|... +..-..|+|++|||.|-+||.|..+|.||||.|..+
T Consensus 467 -PS~------TVFsNfP~~---------n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~hy 514 (514)
T KOG2055|consen 467 -PSC------TVFSNFPTS---------NTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLHHY 514 (514)
T ss_pred -cce------eeeccCCCC---------CCcccceEEEEecCCCceEEeecCCCceeeEeeccC
Confidence 432 111222221 112235899999999999999999999999998753
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.3e-11 Score=133.06 Aligned_cols=251 Identities=15% Similarity=0.200 Sum_probs=150.8
Q ss_pred cCCeEEEEECCCC---eEEEEEE-cCCcEEEEEEcC--C-EEEEEECCeEEEEECCCCceeEEEecCCCcccCCCCcccc
Q 002778 59 SPTAVRFYSFQSH---CYEHVLR-FRSSVCMVRCSP--R-IVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGI 131 (882)
Q Consensus 59 sp~tVrlWDlkTG---~~V~tLk-f~s~V~sV~~S~--r-lLAV~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~ 131 (882)
++.|..+|.+..- +..+++. |..+|.-|+++| + +|+.+.++.+.+||+.|+++.+..... .
T Consensus 244 kD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~------------~ 311 (519)
T KOG0293|consen 244 KDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSG------------L 311 (519)
T ss_pred CCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccC------------c
Confidence 5688999976433 3466665 888999999998 3 555667888999999999986654311 0
Q ss_pred cccceeeEEcC---cEEEEeC-CCeEeccC-CCCCCccCCC---CC-CCCCcCCCCCccEEEeeccchhhhhcccccccc
Q 002778 132 NVGYGPMAVGP---RWLAYAS-NTLLLSNS-GRLSPQNLTP---SG-VSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLS 202 (882)
Q Consensus 132 ~~~~g~lAlsp---R~LAyss-~~v~lwdt-G~vs~q~lt~---~~-vs~s~SP~~GslVA~~A~essk~la~GliktLs 202 (882)
+.....+++-| ++++-++ .+...|+. |.+ ...+.+ |. .-.+-++++-.++ ....|. .+ .++....
T Consensus 312 ~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl-~v~~d~--~i--~l~~~e~ 385 (519)
T KOG0293|consen 312 GFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVL-LVTVDK--KI--RLYNREA 385 (519)
T ss_pred CCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcEEE-EEeccc--ce--eeechhh
Confidence 11234566666 6665443 36788875 322 222211 10 1111223333222 221111 00 0000000
Q ss_pred ccccccCCC-CCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCC--eEEEEECC-CCCEEEEEEcC
Q 002778 203 KYCQELLPD-GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSP--ISALCFDP-SGTLLVTASVY 278 (882)
Q Consensus 203 ~~~~~l~pd-gs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~sp--IsaLaFSP-dGtlLATAS~d 278 (882)
+.+..+... ....+++.+.++++..+ .-.+.+|++||+...+.+..+.+|+.. |-.=||-- +.+++|+||.|
T Consensus 386 ~~dr~lise~~~its~~iS~d~k~~Lv----nL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED 461 (519)
T KOG0293|consen 386 RVDRGLISEEQPITSFSISKDGKLALV----NLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSED 461 (519)
T ss_pred hhhhccccccCceeEEEEcCCCcEEEE----EcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCC
Confidence 000001100 11122333444454322 246789999999988889999999764 44446754 44899999997
Q ss_pred CCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCC-CEEEEEeCCCeEEEEECCCC
Q 002778 279 GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 279 Gt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg-~~LAsgS~DGTVhIWdI~~~ 351 (882)
+. |.||+-.. | ..+.+| -||.. .|.+|+|+|.. ..+|++|+||||+||...+.
T Consensus 462 ~k-vyIWhr~s-------g----------kll~~L-sGHs~-~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 462 SK-VYIWHRIS-------G----------KLLAVL-SGHSK-TVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred ce-EEEEEccC-------C----------ceeEee-cCCcc-eeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 64 99999864 3 466666 47764 69999999965 67999999999999988653
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.5e-10 Score=124.79 Aligned_cols=164 Identities=18% Similarity=0.129 Sum_probs=125.7
Q ss_pred EEEEEE-cCCcEEEEEEcC--CEEEEEE-CCeEEEEECCCCceeEEEecCCCcccCCCCcccccccceeeEEcCcEEEEe
Q 002778 73 YEHVLR-FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYA 148 (882)
Q Consensus 73 ~V~tLk-f~s~V~sV~~S~--rlLAV~~-d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g~lAlspR~LAys 148 (882)
-+.+|. |...|++|+++| .++|+|. |+..+||++.+++.+..+.+|... ... +.|+
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDS-------------Vt~-------~~Fs 115 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDS-------------VTC-------CSFS 115 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCc-------------eEE-------EEEc
Confidence 345554 899999999997 5666654 678999999999988888777651 112 2222
Q ss_pred CCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCCCCccCCCccccccc
Q 002778 149 SNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRH 228 (882)
Q Consensus 149 s~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~l 228 (882)
.+ |. +++
T Consensus 116 hd----------------------------gt--------------------------------------------lLA- 122 (399)
T KOG0296|consen 116 HD----------------------------GT--------------------------------------------LLA- 122 (399)
T ss_pred cC----------------------------ce--------------------------------------------EEE-
Confidence 21 11 111
Q ss_pred cccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCccc
Q 002778 229 AGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 308 (882)
Q Consensus 229 a~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~ 308 (882)
+|+.+|.|+||+..++.....|..--..|.-|.|+|-+..|+.++.||. +-.|.+.. +
T Consensus 123 ---TGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGs-vWmw~ip~-------~----------- 180 (399)
T KOG0296|consen 123 ---TGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGS-VWMWQIPS-------Q----------- 180 (399)
T ss_pred ---ecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCc-EEEEECCC-------c-----------
Confidence 5678899999999999988888766678999999999999999999886 88999932 1
Q ss_pred EEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCC
Q 002778 309 HLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 352 (882)
Q Consensus 309 ~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~g 352 (882)
.+.++.-|+ ++++.+=.|.|||+.++++..||||++|+..+..
T Consensus 181 ~~~kv~~Gh-~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~ 223 (399)
T KOG0296|consen 181 ALCKVMSGH-NSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQ 223 (399)
T ss_pred ceeeEecCC-CCCcccccccCCCceEEEEecCceEEEEecCCCc
Confidence 233344574 4689999999999999999999999999998753
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2e-11 Score=136.79 Aligned_cols=233 Identities=14% Similarity=0.168 Sum_probs=151.1
Q ss_pred cccccccccCccCCCCCccc--ccCCeEEEEECCCCeEEEEEEcCCcEEEEEEcC---CEEEE-EECCeEEEEECCCCce
Q 002778 38 RSHLGGVRDGMMDSQSGNCV--NSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP---RIVAV-GLATQIYCFDALTLEN 111 (882)
Q Consensus 38 ~~~~~~v~~~~~~~~~~~~~--~sp~tVrlWDlkTG~~V~tLkf~s~V~sV~~S~---rlLAV-~~d~qI~IWDa~T~e~ 111 (882)
.||+-+|++...+..--+.+ ..++.|++||++||+++..+.....++.|.|.+ +++++ +++++|..||+++++.
T Consensus 255 ~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv 334 (503)
T KOG0282|consen 255 KGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV 334 (503)
T ss_pred hcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH
Confidence 57777887766654322222 467999999999999999999888899999986 44555 5688999999999997
Q ss_pred eEEEecCCCcccCCCCcccccccceeeEE---cCcEEEEeCC-CeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeec
Q 002778 112 KFSVLTYPVPQLAGQGAVGINVGYGPMAV---GPRWLAYASN-TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAM 187 (882)
Q Consensus 112 l~tL~t~p~p~~~~~~~~g~~~~~g~lAl---spR~LAyss~-~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~ 187 (882)
++....|-.+ +..+.| +.|+|..+++ ++++|.-+.-.+- ..++..++
T Consensus 335 vqeYd~hLg~-------------i~~i~F~~~g~rFissSDdks~riWe~~~~v~i----------------k~i~~~~~ 385 (503)
T KOG0282|consen 335 VQEYDRHLGA-------------ILDITFVDEGRRFISSSDDKSVRIWENRIPVPI----------------KNIADPEM 385 (503)
T ss_pred HHHHHhhhhh-------------eeeeEEccCCceEeeeccCccEEEEEcCCCccc----------------hhhcchhh
Confidence 6655433221 123333 3366666554 6889974321000 01110000
Q ss_pred cchhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCC---cEEEEeccCCCC--eEE
Q 002778 188 EHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR---AIISQFKAHTSP--ISA 262 (882)
Q Consensus 188 essk~la~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~---~~v~~f~aH~sp--Isa 262 (882)
.+.-|-. ..++ .++.+ ..+.+..|.|+.+... .....|++|..+ -..
T Consensus 386 -------------hsmP~~~---------~~P~--~~~~~----aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~ 437 (503)
T KOG0282|consen 386 -------------HTMPCLT---------LHPN--GKWFA----AQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQ 437 (503)
T ss_pred -------------ccCccee---------cCCC--CCeeh----hhccCceEEEEecccccccCHhhhhcceeccCceee
Confidence 0111111 1122 12211 2356777888876543 234678888654 445
Q ss_pred EEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCC-CEEEEEeCCC
Q 002778 263 LCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKG 341 (882)
Q Consensus 263 LaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg-~~LAsgS~DG 341 (882)
+.|||||.+|++|+.+|. +.+||.++. +.+.++. .+ ...+..+.|.|-. ..||+++-+|
T Consensus 438 v~fSpDG~~l~SGdsdG~-v~~wdwkt~-----------------kl~~~lk-ah-~~~ci~v~wHP~e~Skvat~~w~G 497 (503)
T KOG0282|consen 438 VDFSPDGRTLCSGDSDGK-VNFWDWKTT-----------------KLVSKLK-AH-DQPCIGVDWHPVEPSKVATCGWDG 497 (503)
T ss_pred EEEcCCCCeEEeecCCcc-EEEeechhh-----------------hhhhccc-cC-CcceEEEEecCCCcceeEecccCc
Confidence 899999999999999886 899999752 2344443 33 3578899999975 5789999999
Q ss_pred eEEEEE
Q 002778 342 TCHVFV 347 (882)
Q Consensus 342 TVhIWd 347 (882)
-|+||+
T Consensus 498 ~Ikiwd 503 (503)
T KOG0282|consen 498 LIKIWD 503 (503)
T ss_pred eeEecC
Confidence 999996
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=6e-11 Score=129.96 Aligned_cols=103 Identities=20% Similarity=0.252 Sum_probs=81.7
Q ss_pred ccCCCceEEEEECCCC---cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCccc
Q 002778 232 DMDNAGIVVVKDFVTR---AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 308 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~---~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~ 308 (882)
+++.||.|+|||++++ .++. .++|.+.|+.|.|+..-.+||+|+.+|+ ++|||++... ++ .
T Consensus 275 ScS~DgsIrIWDiRs~~~~~~~~-~kAh~sDVNVISWnr~~~lLasG~DdGt-~~iwDLR~~~----~~----------~ 338 (440)
T KOG0302|consen 275 SCSCDGSIRIWDIRSGPKKAAVS-TKAHNSDVNVISWNRREPLLASGGDDGT-LSIWDLRQFK----SG----------Q 338 (440)
T ss_pred eeecCceEEEEEecCCCccceeE-eeccCCceeeEEccCCcceeeecCCCce-EEEEEhhhcc----CC----------C
Confidence 4678999999999988 3333 4899999999999999999999999886 9999997421 11 2
Q ss_pred EEEEEEecccCCcEEEEEEccC-CCEEEEEeCCCeEEEEECCCCC
Q 002778 309 HLYKLHRGITSATIQDICFSHY-SQWIAIVSSKGTCHVFVLSPFG 352 (882)
Q Consensus 309 ~l~~L~RG~t~a~I~sLaFSPD-g~~LAsgS~DGTVhIWdI~~~g 352 (882)
.+..+.+ +.++|++|.|+|. ...||+++.|..|.||||....
T Consensus 339 pVA~fk~--Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 339 PVATFKY--HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred cceeEEe--ccCCeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence 4444443 3468999999985 4678889999999999997543
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.4e-11 Score=129.92 Aligned_cols=119 Identities=19% Similarity=0.201 Sum_probs=92.7
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEe-
Q 002778 237 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR- 315 (882)
Q Consensus 237 G~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~R- 315 (882)
..+-||.-..+..+..+-+|.+.|+-|+|.++|+.|.+++.++..|-.||+... + ..+|+|.|
T Consensus 230 q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~------~----------~pv~~L~rh 293 (406)
T KOG2919|consen 230 QRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS------R----------DPVYALERH 293 (406)
T ss_pred ceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc------c----------chhhhhhhh
Confidence 445566666678888889999999999999999999999988888999999642 2 46777765
Q ss_pred -cccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCcc-ccccccCCCCCCcccCC
Q 002778 316 -GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS-GFQTLSSQGGDPYLFPV 372 (882)
Q Consensus 316 -G~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~-~l~~H~~~~~~~~~sp~ 372 (882)
+.|+.+|+ ...-|+|+|||+|+.||.|++||+...|..+ .+..|.-.+.+..+.|+
T Consensus 294 v~~TNQRI~-FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~ 351 (406)
T KOG2919|consen 294 VGDTNQRIL-FDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPI 351 (406)
T ss_pred ccCccceEE-EecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcc
Confidence 43455665 5567999999999999999999999988754 34555555666666665
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.8e-12 Score=146.72 Aligned_cols=164 Identities=14% Similarity=0.238 Sum_probs=126.8
Q ss_pred cCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC--CEEEEE-ECCeEEEEECCCCceeEEEecCCCcccCCCCccccccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 134 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~--rlLAV~-~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~ 134 (882)
.+++|||||+..++.+++|. |...+.+|.|+| .+.|.+ .+..+++||.+...|.++...|+- .
T Consensus 90 asgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~-------------v 156 (825)
T KOG0267|consen 90 ASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTR-------------V 156 (825)
T ss_pred cCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcc-------------e
Confidence 56899999999999999997 888999999998 455655 467899999998888888766433 1
Q ss_pred ceeeEEcC--cEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCC
Q 002778 135 YGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG 212 (882)
Q Consensus 135 ~g~lAlsp--R~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdg 212 (882)
...+.|.| ||+|
T Consensus 157 v~~l~lsP~Gr~v~------------------------------------------------------------------ 170 (825)
T KOG0267|consen 157 VDVLRLSPDGRWVA------------------------------------------------------------------ 170 (825)
T ss_pred eEEEeecCCCceee------------------------------------------------------------------
Confidence 23344433 3332
Q ss_pred CCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcc
Q 002778 213 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM 292 (882)
Q Consensus 213 s~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~ 292 (882)
++..|.+|+|||+..|+.+..|..|...|.++.|+|..-+|+++|.|++ +++||+++.
T Consensus 171 -------------------~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~t-v~f~dletf-- 228 (825)
T KOG0267|consen 171 -------------------SGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRT-VRFWDLETF-- 228 (825)
T ss_pred -------------------ccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCce-eeeecccee--
Confidence 2344789999999999999999999999999999999999999999775 999999642
Q ss_pred cCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCC
Q 002778 293 RSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK 340 (882)
Q Consensus 293 ~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~D 340 (882)
.+.. ..+.....|.+++|+||++.+++|-..
T Consensus 229 ----------------e~I~-s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 229 ----------------EVIS-SGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred ----------------EEee-ccCCccCCceeeeecCCceeeecCchh
Confidence 1111 111122479999999999999887544
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.8e-11 Score=127.36 Aligned_cols=106 Identities=13% Similarity=0.249 Sum_probs=85.3
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEE
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~ 311 (882)
+++.|.+|.|||+. |+.+.++......-...+.||+|++||+++-.- .++||.+-- .+.|+ -++..+++
T Consensus 204 sas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTp-DVkVwE~~f--~kdG~-------fqev~rvf 272 (420)
T KOG2096|consen 204 SASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTP-DVKVWEPIF--TKDGT-------FQEVKRVF 272 (420)
T ss_pred EecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCC-CceEEEEEe--ccCcc-------hhhhhhhh
Confidence 56788999999998 899999988888888889999999999998743 489999742 23321 12335667
Q ss_pred EEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 002778 312 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 350 (882)
Q Consensus 312 ~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~ 350 (882)
.|. ||.. -|..+|||++++.+++.|.||+.+|||++-
T Consensus 273 ~Lk-GH~s-aV~~~aFsn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 273 SLK-GHQS-AVLAAAFSNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred eec-cchh-heeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence 774 7664 599999999999999999999999999863
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.3e-11 Score=128.59 Aligned_cols=102 Identities=17% Similarity=0.228 Sum_probs=85.6
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEE
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~ 311 (882)
+++-|.+..+||++++.++..|.+|...++..+-.|.-++++|+|. ++++|+||..+. ...+.
T Consensus 289 TaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSr-DtTFRLWDFRea----------------I~sV~ 351 (481)
T KOG0300|consen 289 TASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSR-DTTFRLWDFREA----------------IQSVA 351 (481)
T ss_pred eeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEecc-CceeEeccchhh----------------cceee
Confidence 5678999999999999999999999999999999999999999998 567999999752 12334
Q ss_pred EEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCC
Q 002778 312 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 353 (882)
Q Consensus 312 ~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg 353 (882)
.| .|++. .|+++.|.-|. .+++||+|.||+|||+.....
T Consensus 352 VF-QGHtd-tVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRs 390 (481)
T KOG0300|consen 352 VF-QGHTD-TVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRS 390 (481)
T ss_pred ee-ccccc-ceeEEEEecCC-ceeecCCCceEEEeeeccccC
Confidence 44 47764 69999999886 577999999999999986543
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.3e-11 Score=135.15 Aligned_cols=120 Identities=22% Similarity=0.315 Sum_probs=93.7
Q ss_pred ccCCCceEEEEECCCCcEEEEe-ccCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccE
Q 002778 232 DMDNAGIVVVKDFVTRAIISQF-KAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 309 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f-~aH~spIsaLaFSPdG-tlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~ 309 (882)
+++.+|.|.|||+.....+..+ .+|..|...|||+|.. .+|||-+.| ..|++||+... +.
T Consensus 182 ~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~D-kki~~yD~~s~-----------------~s 243 (673)
T KOG4378|consen 182 IASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYD-KKINIYDIRSQ-----------------AS 243 (673)
T ss_pred eeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEeccc-ceEEEeecccc-----------------cc
Confidence 4678999999999988777554 6899999999999976 467888885 56999999521 11
Q ss_pred EEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccc-cccccCCCCCCcccCC
Q 002778 310 LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSG-FQTLSSQGGDPYLFPV 372 (882)
Q Consensus 310 l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~-l~~H~~~~~~~~~sp~ 372 (882)
...|- ..++...|+|+++|.+||+|+.+|.+.-||+...+.+++ +..|..+|.+..++|.
T Consensus 244 ~~~l~---y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 244 TDRLT---YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred cceee---ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeec
Confidence 11111 124689999999999999999999999999998887775 4688877777666654
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-10 Score=125.50 Aligned_cols=118 Identities=15% Similarity=0.149 Sum_probs=94.2
Q ss_pred CccCCCccccccccccccCCCceEEEEECCCCcEEEEe---ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcc
Q 002778 216 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF---KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM 292 (882)
Q Consensus 216 ~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f---~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~ 292 (882)
++|+-|++..+.+ |-.--++++||+.+-++...- ..|++.|+++.+|+.|++.+|||.||. |+|||--.
T Consensus 221 siSfHPsGefllv----gTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~-IklwDGVS--- 292 (430)
T KOG0640|consen 221 SISFHPSGEFLLV----GTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGA-IKLWDGVS--- 292 (430)
T ss_pred eEeecCCCceEEE----ecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCc-EEeecccc---
Confidence 3455555555432 234468999999998775433 369999999999999999999999887 99999532
Q ss_pred cCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCcc
Q 002778 293 RSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS 355 (882)
Q Consensus 293 ~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~ 355 (882)
+ +++..+.+.|..+.|.+..|..+|+||.+++.|.+|+||.|.+.....
T Consensus 293 ----~----------rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~ 341 (430)
T KOG0640|consen 293 ----N----------RCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLK 341 (430)
T ss_pred ----H----------HHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEE
Confidence 2 567777777777899999999999999999999999999998765443
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.8e-10 Score=136.71 Aligned_cols=216 Identities=17% Similarity=0.206 Sum_probs=141.4
Q ss_pred cCCeEEEEECCCC-eEEEEEE-cCCcEEEEEEcCCEEEEE-ECCeEEEEECCCCceeEEEecCCCcccCCCCcccccccc
Q 002778 59 SPTAVRFYSFQSH-CYEHVLR-FRSSVCMVRCSPRIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGY 135 (882)
Q Consensus 59 sp~tVrlWDlkTG-~~V~tLk-f~s~V~sV~~S~rlLAV~-~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~ 135 (882)
+++.||+|+..+- +...++. +...|.++++....++++ .++.|++|....++.--.|.-...| .
T Consensus 33 sdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp-------------~ 99 (933)
T KOG1274|consen 33 SDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLP-------------I 99 (933)
T ss_pred CCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCccceeeeeecc-------------c
Confidence 6788999987765 5666666 778899999987666655 4678999998877642222111122 2
Q ss_pred eeeEEcC--cEEEEeCCC--eEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCC
Q 002778 136 GPMAVGP--RWLAYASNT--LLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPD 211 (882)
Q Consensus 136 g~lAlsp--R~LAyss~~--v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pd 211 (882)
..++++. .|+|.+++. +++-+. .|.+.+ +++.++ +
T Consensus 100 r~~~v~g~g~~iaagsdD~~vK~~~~-----------------------------~D~s~~------~~lrgh------~ 138 (933)
T KOG1274|consen 100 RDLAVSGSGKMIAAGSDDTAVKLLNL-----------------------------DDSSQE------KVLRGH------D 138 (933)
T ss_pred eEEEEecCCcEEEeecCceeEEEEec-----------------------------cccchh------eeeccc------C
Confidence 3455543 577776642 333221 000000 111111 1
Q ss_pred CCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEecc-------C-CCCeEEEEECCCCCEEEEEEcCCCEEE
Q 002778 212 GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA-------H-TSPISALCFDPSGTLLVTASVYGNNIN 283 (882)
Q Consensus 212 gs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~a-------H-~spIsaLaFSPdGtlLATAS~dGt~Ir 283 (882)
+....+++++.+..+++ ...||.|+|||+.++.+..++.. - ...+.-++|+|+|..||....|+ .|+
T Consensus 139 apVl~l~~~p~~~fLAv----ss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~-~Vk 213 (933)
T KOG1274|consen 139 APVLQLSYDPKGNFLAV----SSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDN-TVK 213 (933)
T ss_pred CceeeeeEcCCCCEEEE----EecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCC-eEE
Confidence 22233455555566553 46799999999999876655542 1 44677899999966666666655 489
Q ss_pred EEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 002778 284 IFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 350 (882)
Q Consensus 284 VWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~ 350 (882)
+|+... + .+.++|+--+..+.+.+++|||+|+|||+++.||-|-|||+++
T Consensus 214 vy~r~~-------w----------e~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 214 VYSRKG-------W----------ELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred EEccCC-------c----------eeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 999863 2 3667775444444699999999999999999999999999984
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-10 Score=123.39 Aligned_cols=110 Identities=16% Similarity=0.246 Sum_probs=82.7
Q ss_pred CCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCC-EEEEEEcCCCEEEEEecCCCcccCCCCCC-ccccCCcccEEEE
Q 002778 235 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRSGSGNH-KYDWNSSHVHLYK 312 (882)
Q Consensus 235 ~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGt-lLATAS~dGt~IrVWdi~p~~~~~~sG~~-~~d~sss~~~l~~ 312 (882)
.+-.|++-|+.+|..-.+|.+|++.|.++.|+|... .|||||.||. ||+||+... +|.. -.|.... +....
T Consensus 166 r~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~-irlWDiRra-----sgcf~~lD~hn~-k~~p~ 238 (397)
T KOG4283|consen 166 RDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGA-IRLWDIRRA-----SGCFRVLDQHNT-KRPPI 238 (397)
T ss_pred CCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCce-EEEEEeecc-----cceeEEeecccC-ccCcc
Confidence 455799999999999999999999999999999876 6799999886 999999742 1210 0111010 11111
Q ss_pred EE-ecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 313 LH-RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 313 L~-RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
+. +-.+...|..+||+.|+++|++.+.|..+++|+...+
T Consensus 239 ~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G 278 (397)
T KOG4283|consen 239 LKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESG 278 (397)
T ss_pred ccccccccceeeeeeecccchhhhhccCccceEEeecccC
Confidence 22 2234458999999999999999999999999998753
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.8e-10 Score=118.51 Aligned_cols=220 Identities=15% Similarity=0.179 Sum_probs=144.7
Q ss_pred CcccccCC----eEEEEECCCCeEEEEEE-cCCcEEEEEEcC---CEEEEEECCeEEEEECCCCceeEEEecCCCcccCC
Q 002778 54 GNCVNSPT----AVRFYSFQSHCYEHVLR-FRSSVCMVRCSP---RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAG 125 (882)
Q Consensus 54 ~~~~~sp~----tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~---rlLAV~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~ 125 (882)
..++.+.+ +||.-++.+.++++.+. |...|.+++.+| ..|.++.|++|++||+++.++...+.....
T Consensus 69 ~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~----- 143 (311)
T KOG1446|consen 69 NTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR----- 143 (311)
T ss_pred ceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC-----
Confidence 34555554 99999999999999998 999999999998 356667899999999998887666643222
Q ss_pred CCcccccccceeeEEcCcEEEEe--C--CCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccc
Q 002778 126 QGAVGINVGYGPMAVGPRWLAYA--S--NTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTL 201 (882)
Q Consensus 126 ~~~~g~~~~~g~lAlspR~LAys--s--~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktL 201 (882)
...|+.|.=|.++ . +.++|.|.-.. +.| ...++
T Consensus 144 ----------pi~AfDp~GLifA~~~~~~~IkLyD~Rs~----------------dkg-----------------PF~tf 180 (311)
T KOG1446|consen 144 ----------PIAAFDPEGLIFALANGSELIKLYDLRSF----------------DKG-----------------PFTTF 180 (311)
T ss_pred ----------cceeECCCCcEEEEecCCCeEEEEEeccc----------------CCC-----------------CceeE
Confidence 2456666333222 2 23444442000 000 00000
Q ss_pred cccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCe---EEEEECCCCCEEEEEEcC
Q 002778 202 SKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPI---SALCFDPSGTLLVTASVY 278 (882)
Q Consensus 202 s~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spI---saLaFSPdGtlLATAS~d 278 (882)
.=... .......+.++++++.+.+. ...+.+.|.|.-+|..+.+|..|...- ...+|.|||+++.+++.|
T Consensus 181 ~i~~~---~~~ew~~l~FS~dGK~iLls----T~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~d 253 (311)
T KOG1446|consen 181 SITDN---DEAEWTDLEFSPDGKSILLS----TNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDD 253 (311)
T ss_pred ccCCC---CccceeeeEEcCCCCEEEEE----eCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCC
Confidence 00000 00001223455667776543 467889999999999999998876543 456899999999999998
Q ss_pred CCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECC
Q 002778 279 GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 349 (882)
Q Consensus 279 Gt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~ 349 (882)
|+ |.||++++ | .++..+ +|.....+.++.|+|--..+|++ +..+-+|-..
T Consensus 254 g~-i~vw~~~t-------g----------~~v~~~-~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~ 303 (311)
T KOG1446|consen 254 GT-IHVWNLET-------G----------KKVAVL-RGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPD 303 (311)
T ss_pred Cc-EEEEEcCC-------C----------cEeeEe-cCCCCCCccccccCCceeeeeec--CceEEEEecc
Confidence 87 89999965 4 466666 46545678999999965555555 5557777554
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.3e-10 Score=129.81 Aligned_cols=176 Identities=14% Similarity=0.158 Sum_probs=132.4
Q ss_pred CCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC---CEEEEEECCeEEEEECCCCceeEEEecCCCcccCCCCcccccccc
Q 002778 60 PTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP---RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGY 135 (882)
Q Consensus 60 p~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~---rlLAV~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~ 135 (882)
++.|.|||..|++.+++++ |++.|.+++|.. ++.+.+.|..|++|++..+..+.++.+|+.-
T Consensus 223 d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~-------------- 288 (479)
T KOG0299|consen 223 DRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDG-------------- 288 (479)
T ss_pred CceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccc--------------
Confidence 4789999999999999987 899999999964 6777888999999999988888888777651
Q ss_pred eeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCCC
Q 002778 136 GPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS 215 (882)
Q Consensus 136 g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~s 215 (882)
.++++ .|+ ++ .|
T Consensus 289 -v~~Id--aL~----------------------------------------re---------------R~---------- 300 (479)
T KOG0299|consen 289 -VLGID--ALS----------------------------------------RE---------------RC---------- 300 (479)
T ss_pred -eeeec--hhc----------------------------------------cc---------------ce----------
Confidence 11110 000 00 00
Q ss_pred CccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCC
Q 002778 216 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSG 295 (882)
Q Consensus 216 ~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~ 295 (882)
+ ..|+.|.+++||++.. ...-.|++|.+.|-|++|=.+ ..++|+|.+|. |-+|++..-
T Consensus 301 ------------v--tVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~-~HfvsGSdnG~-IaLWs~~KK----- 358 (479)
T KOG0299|consen 301 ------------V--TVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGS-IALWSLLKK----- 358 (479)
T ss_pred ------------E--EeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecc-cceeeccCCce-EEEeeeccc-----
Confidence 0 0245799999999954 455688999999999999766 68999999885 999998531
Q ss_pred CCCCccccCCcccEEEE--EEecccC--------CcEEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 296 SGNHKYDWNSSHVHLYK--LHRGITS--------ATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 296 sG~~~~d~sss~~~l~~--L~RG~t~--------a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
+.++. +..|..+ ..|++|+-.|.+..+|+||.+|.|+||.+++.
T Consensus 359 ------------kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 359 ------------KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred ------------CceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 12222 1112211 27999999999999999999999999999864
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.9e-10 Score=118.82 Aligned_cols=108 Identities=16% Similarity=0.206 Sum_probs=87.0
Q ss_pred CCCceEEEEECCCCcEEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEE
Q 002778 234 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 312 (882)
Q Consensus 234 s~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSP-dGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~ 312 (882)
+-||+|+|||..-++.+.+|++|..-|...+|+| .+.++|++|.||+ +++||++.. | +.+.
T Consensus 124 SWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~-l~lwdvr~~------g----------k~~~- 185 (311)
T KOG0277|consen 124 SWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT-LRLWDVRSP------G----------KFMS- 185 (311)
T ss_pred ccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce-EEEEEecCC------C----------ceeE-
Confidence 5699999999999999999999999999999999 5789999999886 899999631 3 2332
Q ss_pred EEecccCCcEEEEEEccC-CCEEEEEeCCCeEEEEECCCCCCcc-cccccc
Q 002778 313 LHRGITSATIQDICFSHY-SQWIAIVSSKGTCHVFVLSPFGGDS-GFQTLS 361 (882)
Q Consensus 313 L~RG~t~a~I~sLaFSPD-g~~LAsgS~DGTVhIWdI~~~gg~~-~l~~H~ 361 (882)
+. .++..|.+..||.- ...||+|+.|++|++|||.....+. .+.+|.
T Consensus 186 i~--ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~ 234 (311)
T KOG0277|consen 186 IE--AHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHG 234 (311)
T ss_pred EE--eccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCc
Confidence 32 23468999999974 5678899999999999998766544 345554
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.9e-10 Score=123.61 Aligned_cols=247 Identities=19% Similarity=0.202 Sum_probs=152.6
Q ss_pred cccccCceEEEEecCCCC------CCCCCcccccccccccCcc----CCCCCcccccCCeEEEEECCCCeEEEEEEcCCc
Q 002778 13 GFRKLHPFLLVVAGEDTN------TLAPGQNRSHLGGVRDGMM----DSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSS 82 (882)
Q Consensus 13 ~f~~~~pll~vv~~d~~~------~~~~~~~~~~~~~v~~~~~----~~~~~~~~~sp~tVrlWDlkTG~~V~tLkf~s~ 82 (882)
+|-.+--+|||-+=|++- +..+.+.+-+..++-+--. ....|+ .++.||.+|+.+++......|..+
T Consensus 20 ~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~---~dg~vr~~Dln~~~~~~igth~~~ 96 (323)
T KOG1036|consen 20 KFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGG---LDGQVRRYDLNTGNEDQIGTHDEG 96 (323)
T ss_pred EEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEec---cCceEEEEEecCCcceeeccCCCc
Confidence 577677777776655541 1122333334444422111 111232 689999999999998877779999
Q ss_pred EEEEEEcC---CEEEEEECCeEEEEECCCCceeEEEecCCCcccCCCCcccccccceeeEEcC-cEEE-EeCCCeEeccC
Q 002778 83 VCMVRCSP---RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP-RWLA-YASNTLLLSNS 157 (882)
Q Consensus 83 V~sV~~S~---rlLAV~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g~lAlsp-R~LA-yss~~v~lwdt 157 (882)
|+.|.... .+|+.+.|++|++||.+......++.. +. ....|.++. ++|. ..+..+.+|+.
T Consensus 97 i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~k-------------kVy~~~v~g~~LvVg~~~r~v~iyDL 162 (323)
T KOG1036|consen 97 IRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GK-------------KVYCMDVSGNRLVVGTSDRKVLIYDL 162 (323)
T ss_pred eEEEEeeccCCeEEEcccCccEEEEecccccccccccc-Cc-------------eEEEEeccCCEEEEeecCceEEEEEc
Confidence 99999884 566667899999999987333333321 11 134555555 4444 55667888874
Q ss_pred CCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCc
Q 002778 158 GRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAG 237 (882)
Q Consensus 158 G~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG 237 (882)
-.+ ..+.. .++++-.+ .-.|-.+.|.+. + ++ .++.+|
T Consensus 163 Rn~-----~~~~q---------------~reS~lky--------qtR~v~~~pn~e---------G----y~--~sSieG 199 (323)
T KOG1036|consen 163 RNL-----DEPFQ---------------RRESSLKY--------QTRCVALVPNGE---------G----YV--VSSIEG 199 (323)
T ss_pred ccc-----cchhh---------------hcccccee--------EEEEEEEecCCC---------c----eE--EEeecc
Confidence 211 00000 00000000 001112223111 1 11 246789
Q ss_pred eEEEEECCCC----cEEEEeccCCC---------CeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccC
Q 002778 238 IVVVKDFVTR----AIISQFKAHTS---------PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWN 304 (882)
Q Consensus 238 ~V~VWDl~s~----~~v~~f~aH~s---------pIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~s 304 (882)
.|-|=.+... +..-.|++|.. ||++|+|+|--..||||+.|| .|++||..+
T Consensus 200 RVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG-~V~~Wd~~~--------------- 263 (323)
T KOG1036|consen 200 RVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDG-IVNIWDLFN--------------- 263 (323)
T ss_pred eEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCc-eEEEccCcc---------------
Confidence 9988777654 34567888864 899999999988999999988 589999854
Q ss_pred CcccEEEEEEecccCCcEEEEEEccCCCEEEEEeC
Q 002778 305 SSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS 339 (882)
Q Consensus 305 ss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~ 339 (882)
.+.++.|.+- ...|-+|+||.||..||++++
T Consensus 264 --rKrl~q~~~~--~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 264 --RKRLKQLAKY--ETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred --hhhhhhccCC--CCceEEEEeccCCCeEEEEec
Confidence 2567777542 235999999999999999975
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.1e-11 Score=136.15 Aligned_cols=208 Identities=15% Similarity=0.194 Sum_probs=140.3
Q ss_pred CCeEEEEECCCCeEEEEEEcCCcEEEEEE--cCCEEEEEECCeEEEEECCCCceeEEEecCCCcccCCCCccccccccee
Q 002778 60 PTAVRFYSFQSHCYEHVLRFRSSVCMVRC--SPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGP 137 (882)
Q Consensus 60 p~tVrlWDlkTG~~V~tLkf~s~V~sV~~--S~rlLAV~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g~ 137 (882)
.+.|--+|..|++..+.+.-...|++|.| +.+++||++..-++||| ..|..+++|..+.. ...
T Consensus 150 KGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD-~~GtElHClk~~~~--------------v~r 214 (545)
T KOG1272|consen 150 KGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYD-NNGTELHCLKRHIR--------------VAR 214 (545)
T ss_pred ccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEec-CCCcEEeehhhcCc--------------hhh
Confidence 46788899999999999999999999998 46899999999999999 45677888876432 122
Q ss_pred eEEcC-c-EEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCCC
Q 002778 138 MAVGP-R-WLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS 215 (882)
Q Consensus 138 lAlsp-R-~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~s 215 (882)
+.|=| . +||.++. +|-+..|.++ .|.+||.+.. ..|..-
T Consensus 215 LeFLPyHfLL~~~~~------~G~L~Y~DVS-----------~GklVa~~~t----------------------~~G~~~ 255 (545)
T KOG1272|consen 215 LEFLPYHFLLVAASE------AGFLKYQDVS-----------TGKLVASIRT----------------------GAGRTD 255 (545)
T ss_pred hcccchhheeeeccc------CCceEEEeec-----------hhhhhHHHHc----------------------cCCccc
Confidence 33323 1 2222221 1222112111 1333321111 011122
Q ss_pred CccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCC
Q 002778 216 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSG 295 (882)
Q Consensus 216 ~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~ 295 (882)
....||-..++. .|+..|+|.+|...+...+..+.+|.++|++||++++|+++||++.| +.++|||+...
T Consensus 256 vm~qNP~NaVih----~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~D-r~~kIWDlR~~----- 325 (545)
T KOG1272|consen 256 VMKQNPYNAVIH----LGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLD-RKVKIWDLRNF----- 325 (545)
T ss_pred hhhcCCccceEE----EcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccc-cceeEeeeccc-----
Confidence 344555555443 57889999999999999999999999999999999999999999995 56999999642
Q ss_pred CCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEEC
Q 002778 296 SGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 348 (882)
Q Consensus 296 sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI 348 (882)
.++..++ ++-....++||.-| .| +.|.-..|+||.=
T Consensus 326 ------------~ql~t~~---tp~~a~~ls~Sqkg-lL-A~~~G~~v~iw~d 361 (545)
T KOG1272|consen 326 ------------YQLHTYR---TPHPASNLSLSQKG-LL-ALSYGDHVQIWKD 361 (545)
T ss_pred ------------cccceee---cCCCcccccccccc-ce-eeecCCeeeeehh
Confidence 2444443 23346789999766 33 3344446999963
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.9e-10 Score=118.52 Aligned_cols=209 Identities=14% Similarity=0.129 Sum_probs=136.8
Q ss_pred cCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC-----CEEEEEECCeEEEEECCCCceeEEEecCCCcccCCCCccccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP-----RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGIN 132 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~-----rlLAV~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~ 132 (882)
++.+|+|||+++...+..|- |.+.|.++.|.+ .+|+.+.|+.|.+||+...+++.++..|..-
T Consensus 61 sDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~----------- 129 (362)
T KOG0294|consen 61 SDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQ----------- 129 (362)
T ss_pred CCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccc-----------
Confidence 57999999999999998876 788999999975 3455566789999999999999999877651
Q ss_pred ccceeeEEcC-cEEEEe---CCCeEeccC--CCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhcccccccccccc
Q 002778 133 VGYGPMAVGP-RWLAYA---SNTLLLSNS--GRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQ 206 (882)
Q Consensus 133 ~~~g~lAlsp-R~LAys---s~~v~lwdt--G~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~ 206 (882)
.+-+++.| .-||.+ +..+.+||. |+... + ..|..+
T Consensus 130 --Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~-------------------v----------------~~L~~~-- 170 (362)
T KOG0294|consen 130 --VTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAF-------------------V----------------LNLKNK-- 170 (362)
T ss_pred --cceeEecCCCceEEEEcCCceeeeehhhcCccce-------------------e----------------eccCCc--
Confidence 24566766 344433 346788984 43210 0 000000
Q ss_pred ccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEe
Q 002778 207 ELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFR 286 (882)
Q Consensus 207 ~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWd 286 (882)
...+.+++.+ ....+ .....|-||.+.+-++...+.-. ..+.++.|... ..|++|..++ .|++||
T Consensus 171 -----at~v~w~~~G--d~F~v-----~~~~~i~i~q~d~A~v~~~i~~~-~r~l~~~~l~~-~~L~vG~d~~-~i~~~D 235 (362)
T KOG0294|consen 171 -----ATLVSWSPQG--DHFVV-----SGRNKIDIYQLDNASVFREIENP-KRILCATFLDG-SELLVGGDNE-WISLKD 235 (362)
T ss_pred -----ceeeEEcCCC--CEEEE-----EeccEEEEEecccHhHhhhhhcc-ccceeeeecCC-ceEEEecCCc-eEEEec
Confidence 0011122111 11111 12346888888776554443322 44667777655 4666777755 599999
Q ss_pred cCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEE--ccCCCEEEEEeCCCeEEEEECCCC
Q 002778 287 IMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF--SHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 287 i~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaF--SPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
... + ..+..+. +|. ++|.+|.| .|++.+|+++|+||.|+|||++..
T Consensus 236 ~ds-------~----------~~~~~~~-AH~-~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 236 TDS-------D----------TPLTEFL-AHE-NRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred cCC-------C----------ccceeee-cch-hheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 853 2 2445543 444 68999985 578999999999999999999865
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.4e-10 Score=124.56 Aligned_cols=243 Identities=12% Similarity=0.086 Sum_probs=147.8
Q ss_pred CCeEEEEECCCCeEEE-EEEcCCcEEEEEEcC--CEEEEE-ECCeEEEEECCCCceeEEEecCCCcccCCCCcccccccc
Q 002778 60 PTAVRFYSFQSHCYEH-VLRFRSSVCMVRCSP--RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGY 135 (882)
Q Consensus 60 p~tVrlWDlkTG~~V~-tLkf~s~V~sV~~S~--rlLAV~-~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~ 135 (882)
...|.+|.+.....+. .+..++.|.+++.++ .+|+.+ -.++||||.+.||+++..+..|-.+ .
T Consensus 60 rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~-------------I 126 (476)
T KOG0646|consen 60 RPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQS-------------I 126 (476)
T ss_pred CccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccc-------------e
Confidence 3578899987665555 334789999999876 566665 5789999999999998888654331 1
Q ss_pred eeeEEcC--cEEEEeCC--CeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCC
Q 002778 136 GPMAVGP--RWLAYASN--TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPD 211 (882)
Q Consensus 136 g~lAlsp--R~LAyss~--~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pd 211 (882)
..+-|+. .++..+++ .+++|..-.+- ++++...++ ....|+.|...+. +
T Consensus 127 TcL~fs~dgs~iiTgskDg~V~vW~l~~lv-------------~a~~~~~~~-------------p~~~f~~HtlsIT-D 179 (476)
T KOG0646|consen 127 TCLKFSDDGSHIITGSKDGAVLVWLLTDLV-------------SADNDHSVK-------------PLHIFSDHTLSIT-D 179 (476)
T ss_pred eEEEEeCCCcEEEecCCCccEEEEEEEeec-------------ccccCCCcc-------------ceeeeccCcceeE-E
Confidence 3344432 44544443 47777642220 000000000 0001111110000 0
Q ss_pred CCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCc
Q 002778 212 GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSC 291 (882)
Q Consensus 212 gs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~ 291 (882)
.-+.+.+.... + .+++.|.++++||+..+..+.++. -..+|.|++.+|-++.+..|+.+|. |.+.++....
T Consensus 180 ---l~ig~Gg~~~r--l--~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~-I~~~~~~~~~ 250 (476)
T KOG0646|consen 180 ---LQIGSGGTNAR--L--YTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGK-IFQNLLFKLS 250 (476)
T ss_pred ---EEecCCCccce--E--EEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcce-EEeeehhcCC
Confidence 00000000011 1 167899999999999998887765 4578999999999999999999885 6676664211
Q ss_pred ccCCCCCCccccCC-----cccEEEEEEecccC-CcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccccc
Q 002778 292 MRSGSGNHKYDWNS-----SHVHLYKLHRGITS-ATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQ 358 (882)
Q Consensus 292 ~~~~sG~~~~d~ss-----s~~~l~~L~RG~t~-a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~ 358 (882)
|. +.+... .......+ -|+.+ ..|++|+.|-||..|++|+.||+|.|||+....+..++.
T Consensus 251 -----~~-~~~v~~k~~~~~~t~~~~~-~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 251 -----GQ-SAGVNQKGRHEENTQINVL-VGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred -----cc-cccccccccccccceeeee-ccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 10 000000 11222333 25554 479999999999999999999999999998766655554
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.7e-10 Score=130.84 Aligned_cols=218 Identities=16% Similarity=0.220 Sum_probs=143.0
Q ss_pred CeEEEEECCCCeEEEEEE-cCCcEEEEEEcC-----CEEEEEEC-CeEEEEECCC-CceeEEEecCCCcccCCCCccccc
Q 002778 61 TAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP-----RIVAVGLA-TQIYCFDALT-LENKFSVLTYPVPQLAGQGAVGIN 132 (882)
Q Consensus 61 ~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~-----rlLAV~~d-~qI~IWDa~T-~e~l~tL~t~p~p~~~~~~~~g~~ 132 (882)
+++|||||..-++...++ |.+.|..+.++. ++||.+.. .-|+|||+.. -.++.+|.+|...
T Consensus 481 GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSss----------- 549 (1080)
T KOG1408|consen 481 GNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSS----------- 549 (1080)
T ss_pred CceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccc-----------
Confidence 789999999988888887 899999999974 68888774 4599999864 3456777776551
Q ss_pred ccceeeEE--c---CcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccc
Q 002778 133 VGYGPMAV--G---PRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQE 207 (882)
Q Consensus 133 ~~~g~lAl--s---pR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~ 207 (882)
+..+.| + -+.|....++.+...+- | . .++|.+. ..+ -.++.+..
T Consensus 550 --ITsvKFa~~gln~~MiscGADksimFr~~----q------k-----~~~g~~f-----------~r~-t~t~~ktT-- 598 (1080)
T KOG1408|consen 550 --ITSVKFACNGLNRKMISCGADKSIMFRVN----Q------K-----ASSGRLF-----------PRH-TQTLSKTT-- 598 (1080)
T ss_pred --eeEEEEeecCCceEEEeccCchhhheehh----c------c-----ccCceec-----------ccc-ccccccce--
Confidence 122222 0 02222222211111100 0 0 0001000 000 00110000
Q ss_pred cCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEecc---CCCCeEEEEECCCCCEEEEEEcCCCEEEE
Q 002778 208 LLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA---HTSPISALCFDPSGTLLVTASVYGNNINI 284 (882)
Q Consensus 208 l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~a---H~spIsaLaFSPdGtlLATAS~dGt~IrV 284 (882)
-.-...++.|+..+ ++.+|..|+|||+.+++.++.|++ |.+..-.+..+|+|-+|||...|. ++-+
T Consensus 599 ------lYDm~Vdp~~k~v~----t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdk-tl~~ 667 (1080)
T KOG1408|consen 599 ------LYDMAVDPTSKLVV----TVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDK-TLCF 667 (1080)
T ss_pred ------EEEeeeCCCcceEE----EEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCC-ceEE
Confidence 00112334456544 568999999999999999999985 667788899999999999988755 5899
Q ss_pred EecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 002778 285 FRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 350 (882)
Q Consensus 285 Wdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~ 350 (882)
||... | .++.+. .||. ..|+.+.|++|.+.|.+.+.||.|.||.+..
T Consensus 668 ~Df~s-------g----------EcvA~m-~GHs-E~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 668 VDFVS-------G----------ECVAQM-TGHS-EAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EEecc-------c----------hhhhhh-cCcc-hheeeeeecccchhheeecCCceEEEEECch
Confidence 99853 3 244443 3655 4699999999999999999999999999965
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.2e-10 Score=127.45 Aligned_cols=223 Identities=20% Similarity=0.225 Sum_probs=138.6
Q ss_pred EEEEEEcCCcEEEEEEcC--CEEEEEECCeEEEEECCCCcee---EEEecCCCcccCCCCcccccccceeeEEcC--cEE
Q 002778 73 YEHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLENK---FSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWL 145 (882)
Q Consensus 73 ~V~tLkf~s~V~sV~~S~--rlLAV~~d~qI~IWDa~T~e~l---~tL~t~p~p~~~~~~~~g~~~~~g~lAlsp--R~L 145 (882)
.+++|.|...|+++.++. +.|.+|..+.|+|||+..-... ..|.. -++ .| -...+.+.| |.|
T Consensus 412 q~~tL~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdc-l~r---------dn-yiRSckL~pdgrtL 480 (705)
T KOG0639|consen 412 QINTLAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDC-LNR---------DN-YIRSCKLLPDGRTL 480 (705)
T ss_pred hhhhhccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccc-cCc---------cc-ceeeeEecCCCceE
Confidence 456777889999999986 7888898899999999754321 11111 000 01 124455554 666
Q ss_pred EEeC--CCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCCCCccCCCcc
Q 002778 146 AYAS--NTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVW 223 (882)
Q Consensus 146 Ayss--~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~s~~S~ss~~ 223 (882)
...+ .++-|||...-++ ++.+ .|+.. .-.-.++..+++.
T Consensus 481 ivGGeastlsiWDLAapTp-----------------------------rika----eltss------apaCyALa~spDa 521 (705)
T KOG0639|consen 481 IVGGEASTLSIWDLAAPTP-----------------------------RIKA----ELTSS------APACYALAISPDA 521 (705)
T ss_pred EeccccceeeeeeccCCCc-----------------------------chhh----hcCCc------chhhhhhhcCCcc
Confidence 5554 3677887421000 0000 00000 0000111222233
Q ss_pred ccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcc----------c
Q 002778 224 KVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM----------R 293 (882)
Q Consensus 224 k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~----------~ 293 (882)
++. + ....||.|.|||+.+...+.+|++|++.+.||.+++||+.|=|++-|. ++|-||+..... -
T Consensus 522 kvc-F---sccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDn-tvRcWDlregrqlqqhdF~SQIf 596 (705)
T KOG0639|consen 522 KVC-F---SCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDN-TVRCWDLREGRQLQQHDFSSQIF 596 (705)
T ss_pred cee-e---eeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCcc-ceeehhhhhhhhhhhhhhhhhhe
Confidence 321 1 245689999999999999999999999999999999999999999965 599999865210 0
Q ss_pred CCCCCCccccCC-------------cccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCC
Q 002778 294 SGSGNHKYDWNS-------------SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 353 (882)
Q Consensus 294 ~~sG~~~~d~ss-------------s~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg 353 (882)
+..-....||-. +....|.| +.+...|.+|.|++.|+|+++.+.|+-+..|.. ++|.
T Consensus 597 SLg~cP~~dWlavGMens~vevlh~skp~kyql--hlheScVLSlKFa~cGkwfvStGkDnlLnawrt-PyGa 666 (705)
T KOG0639|consen 597 SLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQL--HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT-PYGA 666 (705)
T ss_pred ecccCCCccceeeecccCcEEEEecCCccceee--cccccEEEEEEecccCceeeecCchhhhhhccC-cccc
Confidence 000011234421 11222333 334567999999999999999999999999986 4553
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.2e-09 Score=129.14 Aligned_cols=176 Identities=18% Similarity=0.163 Sum_probs=118.4
Q ss_pred ccCCeEEEEECCCCeEEEEEEcCCcEEEEEEcC---CEEEE-EECCeEEEEECCCCceeEEEecCCCcccCCCCcccccc
Q 002778 58 NSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP---RIVAV-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 133 (882)
Q Consensus 58 ~sp~tVrlWDlkTG~~V~tLkf~s~V~sV~~S~---rlLAV-~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~ 133 (882)
..++|||||++...+++++|.|.+-|++|+|+| ++++. ++|++|+||++..-+...--..+..
T Consensus 387 SMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~l------------- 453 (712)
T KOG0283|consen 387 SMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDL------------- 453 (712)
T ss_pred cccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhh-------------
Confidence 368999999999999999999999999999998 45555 5799999999876543211111000
Q ss_pred cceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCC
Q 002778 134 GYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS 213 (882)
Q Consensus 134 ~~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs 213 (882)
+.+ ++|.+ +|
T Consensus 454 -ITA-------vcy~P---------------------------dG----------------------------------- 463 (712)
T KOG0283|consen 454 -ITA-------VCYSP---------------------------DG----------------------------------- 463 (712)
T ss_pred -hee-------EEecc---------------------------CC-----------------------------------
Confidence 011 12211 11
Q ss_pred CCCccCCCccccccccccccCCCceEEEEECCCCcEEEEec---------cCCCCeEEEEECCCCC--EEEEEEcCCCEE
Q 002778 214 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK---------AHTSPISALCFDPSGT--LLVTASVYGNNI 282 (882)
Q Consensus 214 ~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~---------aH~spIsaLaFSPdGt--lLATAS~dGt~I 282 (882)
+. ++ .|..+|.+++|++...+.+..+. .|. .|+.+.|.|.-. +|||. . +..|
T Consensus 464 ----------k~-av---IGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTS-n-DSrI 526 (712)
T KOG0283|consen 464 ----------KG-AV---IGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTS-N-DSRI 526 (712)
T ss_pred ----------ce-EE---EEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEec-C-CCce
Confidence 11 01 24567888888888776654443 133 799999998554 77764 4 3459
Q ss_pred EEEecCCCcccCCCCCCccccCCcccEEEEEEecccCC-cEEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 283 NIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA-TIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 283 rVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a-~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
||||..+. ..+.+| .|+.+. .-..-+|+.||++|+++|.|.-|+||++...
T Consensus 527 RI~d~~~~-----------------~lv~Kf-KG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 527 RIYDGRDK-----------------DLVHKF-KGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred EEEeccch-----------------hhhhhh-cccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 99998531 133333 244332 2244689999999999999999999998654
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.6e-09 Score=125.84 Aligned_cols=200 Identities=17% Similarity=0.204 Sum_probs=141.0
Q ss_pred cCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC-CEEEE-EECCeEEEEECCCCceeEEEecCCCcccCCCCcccccccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP-RIVAV-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGY 135 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~-rlLAV-~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~ 135 (882)
.+++|.+|.+.+...+.+|+ |.+.|+++.... ..|++ +.|.++++|-.. ++..++.+|+.+ .
T Consensus 79 ~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~--~l~~~l~gH~as-------------V 143 (745)
T KOG0301|consen 79 MDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIG--ELVYSLQGHTAS-------------V 143 (745)
T ss_pred ccceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecch--hhhcccCCcchh-------------e
Confidence 47899999999999999997 999999999654 34444 568999999764 555667777663 2
Q ss_pred eeeE-EcC-cEEE-EeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccc-----
Q 002778 136 GPMA-VGP-RWLA-YASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQE----- 207 (882)
Q Consensus 136 g~lA-lsp-R~LA-yss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~----- 207 (882)
++++ |.- .+|- .++..+++|..|.. . ++|++|...
T Consensus 144 WAv~~l~e~~~vTgsaDKtIklWk~~~~-l------------------------------------~tf~gHtD~VRgL~ 186 (745)
T KOG0301|consen 144 WAVASLPENTYVTGSADKTIKLWKGGTL-L------------------------------------KTFSGHTDCVRGLA 186 (745)
T ss_pred eeeeecCCCcEEeccCcceeeeccCCch-h------------------------------------hhhccchhheeeeE
Confidence 3333 322 3332 23457889976432 1 222222211
Q ss_pred cCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEec
Q 002778 208 LLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI 287 (882)
Q Consensus 208 l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi 287 (882)
.+++++ + .++++||.|++||+ ++.++....+|+.-|.+++..+++.+++|++.|++ +|||+.
T Consensus 187 vl~~~~--------------f--lScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrt-lriW~~ 248 (745)
T KOG0301|consen 187 VLDDSH--------------F--LSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRT-LRIWKK 248 (745)
T ss_pred EecCCC--------------e--EeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCce-EEEeec
Confidence 011110 1 14689999999999 78899999999999999998888899999999776 899998
Q ss_pred CCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 002778 288 MPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 350 (882)
Q Consensus 288 ~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~ 350 (882)
. .+...+.-- .-.||++.+=++|. |++|++||-|+||...+
T Consensus 249 ~-------------------e~~q~I~lP--ttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 249 D-------------------ECVQVITLP--TTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred C-------------------ceEEEEecC--ccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 3 244444321 12699999988876 55777899999998874
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.8e-09 Score=107.24 Aligned_cols=99 Identities=15% Similarity=0.148 Sum_probs=74.2
Q ss_pred CCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEE
Q 002778 234 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 313 (882)
Q Consensus 234 s~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L 313 (882)
..++.|++||+.+++.+..+..+ ..+.+++|+|+|.+|++++.++..+.+||... + ..+..+
T Consensus 92 ~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~-------~----------~~~~~~ 153 (300)
T TIGR03866 92 EDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKT-------Y----------EIVDNV 153 (300)
T ss_pred CCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCCC-------C----------eEEEEE
Confidence 45789999999998888877643 34678999999999999988776678889743 2 122222
Q ss_pred EecccCCcEEEEEEccCCCEEEEEe-CCCeEEEEECCCCCC
Q 002778 314 HRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFGG 353 (882)
Q Consensus 314 ~RG~t~a~I~sLaFSPDg~~LAsgS-~DGTVhIWdI~~~gg 353 (882)
..+ ..+..++|+|||++|++++ .+++|++||+.....
T Consensus 154 ~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~ 191 (300)
T TIGR03866 154 LVD---QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV 191 (300)
T ss_pred EcC---CCccEEEECCCCCEEEEEcCCCCEEEEEEcCccee
Confidence 222 2457799999999986554 699999999986543
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.6e-09 Score=111.21 Aligned_cols=234 Identities=15% Similarity=0.174 Sum_probs=137.5
Q ss_pred ccCCeEEEEECCCC---eEEEEEE-cCCcEEEEEEc-C---CEEEEEE-CCeEEEEECCCCce--eEEEecCCCcccCCC
Q 002778 58 NSPTAVRFYSFQSH---CYEHVLR-FRSSVCMVRCS-P---RIVAVGL-ATQIYCFDALTLEN--KFSVLTYPVPQLAGQ 126 (882)
Q Consensus 58 ~sp~tVrlWDlkTG---~~V~tLk-f~s~V~sV~~S-~---rlLAV~~-d~qI~IWDa~T~e~--l~tL~t~p~p~~~~~ 126 (882)
.++++|||+..+.+ +.+.+|. |.++|..|++. | .+||.+. |++|.||.-.+++- .+....|..
T Consensus 30 sSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~------ 103 (299)
T KOG1332|consen 30 SSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSA------ 103 (299)
T ss_pred cCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcc------
Confidence 37899999999864 3566776 99999999985 3 6888864 78999999877631 111112222
Q ss_pred CcccccccceeeEEcC----cEEEEeCC--CeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhcccccc
Q 002778 127 GAVGINVGYGPMAVGP----RWLAYASN--TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKT 200 (882)
Q Consensus 127 ~~~g~~~~~g~lAlsp----R~LAyss~--~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~Glikt 200 (882)
..+.+++.| =.||.+++ .+.+-. |..+.. .....+.+.
T Consensus 104 -------SVNsV~wapheygl~LacasSDG~vsvl~----------------------------~~~~g~-w~t~ki~~a 147 (299)
T KOG1332|consen 104 -------SVNSVAWAPHEYGLLLACASSDGKVSVLT----------------------------YDSSGG-WTTSKIVFA 147 (299)
T ss_pred -------cceeecccccccceEEEEeeCCCcEEEEE----------------------------EcCCCC-ccchhhhhc
Confidence 234555544 23444332 222211 000000 000000000
Q ss_pred cccccccc--CCCC-CCCCccCCCccccccccccccCCCceEEEEECCCCc--EEEEeccCCCCeEEEEECCCC----CE
Q 002778 201 LSKYCQEL--LPDG-SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA--IISQFKAHTSPISALCFDPSG----TL 271 (882)
Q Consensus 201 Ls~~~~~l--~pdg-s~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~--~v~~f~aH~spIsaLaFSPdG----tl 271 (882)
-.--++.. .|.. ....+...+.-++-.++ +|+.|..|+||+..+++ .-.+|.+|++.|..+|+.|.- ..
T Consensus 148 H~~GvnsVswapa~~~g~~~~~~~~~~~krlv--SgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~ 225 (299)
T KOG1332|consen 148 HEIGVNSVSWAPASAPGSLVDQGPAAKVKRLV--SGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKST 225 (299)
T ss_pred cccccceeeecCcCCCccccccCcccccceee--ccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCcee
Confidence 00000000 0000 00011111111122222 67889999999998864 335699999999999999964 58
Q ss_pred EEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 272 LVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 272 LATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
||++|.||+ +.||..... ...|.. ..+.+| +..++.++||..|..||++..|+.|.||.=+..
T Consensus 226 iAS~SqDg~-viIwt~~~e---------~e~wk~--tll~~f-----~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 226 IASCSQDGT-VIIWTKDEE---------YEPWKK--TLLEEF-----PDVVWRVSWSLSGNILAVSGGDNKVTLWKENVD 288 (299)
T ss_pred eEEecCCCc-EEEEEecCc---------cCcccc--cccccC-----CcceEEEEEeccccEEEEecCCcEEEEEEeCCC
Confidence 999999998 569987421 011211 222222 356999999999999999999999999986654
Q ss_pred C
Q 002778 352 G 352 (882)
Q Consensus 352 g 352 (882)
|
T Consensus 289 G 289 (299)
T KOG1332|consen 289 G 289 (299)
T ss_pred C
Confidence 4
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.8e-10 Score=127.27 Aligned_cols=118 Identities=14% Similarity=0.141 Sum_probs=95.3
Q ss_pred cCCCceEEEEECCCCcEEEEecc-CCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEE
Q 002778 233 MDNAGIVVVKDFVTRAIISQFKA-HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 233 gs~dG~V~VWDl~s~~~v~~f~a-H~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~ 311 (882)
|-.+|.|.|||..+.+.+..+.. |...|.+|+++ +..|.+++.+|. |.++|+... .++.
T Consensus 235 G~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~-I~~~dvR~~-----------------~~~~ 294 (484)
T KOG0305|consen 235 GTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGK-ILNHDVRIS-----------------QHVV 294 (484)
T ss_pred eecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCc-EEEEEEecc-----------------hhhh
Confidence 34589999999999999999998 99999999999 667888888775 899999641 1111
Q ss_pred EEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccccccccCCCCCCcccC
Q 002778 312 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFP 371 (882)
Q Consensus 312 ~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~H~~~~~~~~~sp 371 (882)
...+||. ..|..+.|++|+++||+|+.|+.++|||.....-...+..|.+.|....+.|
T Consensus 295 ~~~~~H~-qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP 353 (484)
T KOG0305|consen 295 STLQGHR-QEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCP 353 (484)
T ss_pred hhhhccc-ceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCC
Confidence 1124554 4799999999999999999999999999977777778899988776655554
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.9e-09 Score=114.12 Aligned_cols=131 Identities=15% Similarity=0.235 Sum_probs=100.3
Q ss_pred cCCeEEEEECCCCeEEEEEEcCCcEEEEEEcC-----CEEEEEEC-CeEEEEECCCCceeEEEecCCCcccCCCCccccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP-----RIVAVGLA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGIN 132 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLkf~s~V~sV~~S~-----rlLAV~~d-~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~ 132 (882)
-++++|+||..|-+..-.+++.+.||+-+++| -++|++.+ -+|++.|+..|..-++|.+|..
T Consensus 122 FDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~------------ 189 (397)
T KOG4283|consen 122 FDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD------------ 189 (397)
T ss_pred ccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC------------
Confidence 46999999999999999999999999988886 36777764 5899999999999999988865
Q ss_pred ccceeeEE--cC--cEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhcccccccccccccc
Q 002778 133 VGYGPMAV--GP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQEL 208 (882)
Q Consensus 133 ~~~g~lAl--sp--R~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l 208 (882)
+.||+ +| .|+-+
T Consensus 190 ---~vlaV~Wsp~~e~vLa------------------------------------------------------------- 205 (397)
T KOG4283|consen 190 ---GVLAVEWSPSSEWVLA------------------------------------------------------------- 205 (397)
T ss_pred ---ceEEEEeccCceeEEE-------------------------------------------------------------
Confidence 23443 33 22221
Q ss_pred CCCCCCCCccCCCccccccccccccCCCceEEEEECCCC------------c---EEEEeccCCCCeEEEEECCCCCEEE
Q 002778 209 LPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR------------A---IISQFKAHTSPISALCFDPSGTLLV 273 (882)
Q Consensus 209 ~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~------------~---~v~~f~aH~spIsaLaFSPdGtlLA 273 (882)
+|+.||.|++||+..- + .+++-.+|.+.|..+||..+|.+|+
T Consensus 206 -----------------------tgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~ 262 (397)
T KOG4283|consen 206 -----------------------TGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLA 262 (397)
T ss_pred -----------------------ecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhh
Confidence 3455666677766421 1 2233457889999999999999999
Q ss_pred EEEcCCCEEEEEecCC
Q 002778 274 TASVYGNNINIFRIMP 289 (882)
Q Consensus 274 TAS~dGt~IrVWdi~p 289 (882)
+.+.|+. |++|+...
T Consensus 263 ~~gtd~r-~r~wn~~~ 277 (397)
T KOG4283|consen 263 SCGTDDR-IRVWNMES 277 (397)
T ss_pred hccCccc-eEEeeccc
Confidence 9999775 99999864
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.1e-09 Score=115.98 Aligned_cols=157 Identities=15% Similarity=0.202 Sum_probs=115.3
Q ss_pred cCCcEEEEEEcCCEEEEEE-CCeEEEEECCCCceeEEEecCCCcccCCCCcccccccceeeEEcCcEEEEeCCCeEeccC
Q 002778 79 FRSSVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNS 157 (882)
Q Consensus 79 f~s~V~sV~~S~rlLAV~~-d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g~lAlspR~LAyss~~v~lwdt 157 (882)
|.+.|.+|++++.+||+|. |++|+|||+++...+..|..|... .+++.| |.+.
T Consensus 42 H~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~Hags-------------itaL~F------~~~~------- 95 (362)
T KOG0294|consen 42 HAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGS-------------ITALKF------YPPL------- 95 (362)
T ss_pred cccceeEEEecceeEeccCCCCcEEEEeccchhhhcceeccccc-------------eEEEEe------cCCc-------
Confidence 6788999999999999975 789999999998887777655330 122222 1110
Q ss_pred CCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCc
Q 002778 158 GRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAG 237 (882)
Q Consensus 158 G~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG 237 (882)
| .+ .+ + +++.||
T Consensus 96 -----------------S-------------------------------------------~s----hL-l---S~sdDG 107 (362)
T KOG0294|consen 96 -----------------S-------------------------------------------KS----HL-L---SGSDDG 107 (362)
T ss_pred -----------------c-------------------------------------------hh----he-e---eecCCC
Confidence 0 00 00 0 357799
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecc
Q 002778 238 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI 317 (882)
Q Consensus 238 ~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~ 317 (882)
.|.+||...-.++..|++|.+.|+.|+.+|+|++..+-+.|+ .+|.|++.. | +.-+.+.-+.
T Consensus 108 ~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~-~lr~WNLV~-------G----------r~a~v~~L~~ 169 (362)
T KOG0294|consen 108 HIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQ-VLRTWNLVR-------G----------RVAFVLNLKN 169 (362)
T ss_pred cEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCc-eeeeehhhc-------C----------ccceeeccCC
Confidence 999999999999999999999999999999999888888855 699999975 3 2223332222
Q ss_pred cCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 318 TSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 318 t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
.+ ..|.|+|.|.+++++..+ .|-||.+...
T Consensus 170 -~a--t~v~w~~~Gd~F~v~~~~-~i~i~q~d~A 199 (362)
T KOG0294|consen 170 -KA--TLVSWSPQGDHFVVSGRN-KIDIYQLDNA 199 (362)
T ss_pred -cc--eeeEEcCCCCEEEEEecc-EEEEEecccH
Confidence 23 349999999988888755 5899988754
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.3e-09 Score=119.30 Aligned_cols=210 Identities=14% Similarity=0.180 Sum_probs=133.9
Q ss_pred CCCCeEEEEEEcCCcEEEEEEcC--CEEEEE-ECCeEEEEECCCCceeEEEecCCCcccCCCCcccccccceeeEEcC--
Q 002778 68 FQSHCYEHVLRFRSSVCMVRCSP--RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP-- 142 (882)
Q Consensus 68 lkTG~~V~tLkf~s~V~sV~~S~--rlLAV~-~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g~lAlsp-- 142 (882)
+.+|.-+|...-+ .+.++...+ ..+..+ -|..+.|||-.+.+.+.++.+|... ...+.+.|
T Consensus 208 ~ash~gLH~t~~p-gi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kk-------------i~~v~~~~~~ 273 (506)
T KOG0289|consen 208 VASHTGLHSTSTP-GITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKK-------------ITSVKFHKDL 273 (506)
T ss_pred cCCCcceeccCCC-CeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceE-------------EEEEEeccch
Confidence 3444444433322 366666655 455554 4568999999998888888877652 12333444
Q ss_pred cEEEE--eCCCeEeccCCCCCC-ccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCCCCccC
Q 002778 143 RWLAY--ASNTLLLSNSGRLSP-QNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSP 219 (882)
Q Consensus 143 R~LAy--ss~~v~lwdtG~vs~-q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~s~~S~ 219 (882)
+.++. ++..+.+|..+..+- +.+.+ .+ +....++-
T Consensus 274 ~~v~~aSad~~i~vws~~~~s~~~~~~~-------------------h~-----------------------~~V~~ls~ 311 (506)
T KOG0289|consen 274 DTVITASADEIIRVWSVPLSSEPTSSRP-------------------HE-----------------------EPVTGLSL 311 (506)
T ss_pred hheeecCCcceEEeeccccccCcccccc-------------------cc-----------------------ccceeeee
Confidence 22332 334577887532210 00000 00 00000111
Q ss_pred CCccccccccccccCCCceEEEEECCCCcEEEEeccC--CCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCC
Q 002778 220 NSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH--TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSG 297 (882)
Q Consensus 220 ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH--~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG 297 (882)
.+.+.++. .++.||+.-..|+.++..+.....- .-.+++++|+|||.+|+|+..|| .++|||++. +
T Consensus 312 h~tgeYll----sAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~-~vkiwdlks-------~ 379 (506)
T KOG0289|consen 312 HPTGEYLL----SASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDG-VVKIWDLKS-------Q 379 (506)
T ss_pred ccCCcEEE----EecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCc-eEEEEEcCC-------c
Confidence 22233432 4588999999999999987766542 23589999999999999999977 599999963 2
Q ss_pred CCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCcccc
Q 002778 298 NHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGF 357 (882)
Q Consensus 298 ~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l 357 (882)
..+.+|. | +.++|..|+||.+|-|||++++|+.|++||+.......++
T Consensus 380 ----------~~~a~Fp-g-ht~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~ 427 (506)
T KOG0289|consen 380 ----------TNVAKFP-G-HTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTI 427 (506)
T ss_pred ----------cccccCC-C-CCCceeEEEeccCceEEEEEecCCeEEEEEehhhccccee
Confidence 1344443 5 4478999999999999999999999999999876544433
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.8e-10 Score=131.28 Aligned_cols=100 Identities=14% Similarity=0.269 Sum_probs=83.4
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEE
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 310 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSP-dGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l 310 (882)
+|++||+|++||+...+...+|++....|..++|+| .+..+|++...| .+++||+.-. . +..
T Consensus 151 SGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG-~lqlWDlRqp------~----------r~~ 213 (839)
T KOG0269|consen 151 SGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSG-YLQLWDLRQP------D----------RCE 213 (839)
T ss_pred ecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCc-eEEEeeccCc------h----------hHH
Confidence 568999999999999999999999999999999999 567888888755 5999999631 0 122
Q ss_pred EEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 002778 311 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 350 (882)
Q Consensus 311 ~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~ 350 (882)
.+| ..++..|.++.|+|+..|||+|+.|++|+||++..
T Consensus 214 ~k~--~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~ 251 (839)
T KOG0269|consen 214 KKL--TAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTD 251 (839)
T ss_pred HHh--hcccCceEEEeecCCCceeeecCCCccEEEEeccC
Confidence 222 33456899999999999999999999999999975
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.4e-08 Score=105.73 Aligned_cols=185 Identities=15% Similarity=0.099 Sum_probs=130.6
Q ss_pred CCeEEEEECCCCeEEEEEE-cCCcEEEEE-EcCCEEEEEE-CCeEEEEECCCCceeEEEecCCCcccCCCCcccccccce
Q 002778 60 PTAVRFYSFQSHCYEHVLR-FRSSVCMVR-CSPRIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 136 (882)
Q Consensus 60 p~tVrlWDlkTG~~V~tLk-f~s~V~sV~-~S~rlLAV~~-d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g 136 (882)
+-+|.+-|..+|+..+.+. |.+.|.++- ++.-.+|.+. |++|++||++-..++.++...-. +.+ ..
T Consensus 162 dc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~---------~~g--le 230 (350)
T KOG0641|consen 162 DCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFH---------DGG--LE 230 (350)
T ss_pred cceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCccc---------CCC--cc
Confidence 4577778999999999997 889999875 6777788764 77899999998877777753111 000 00
Q ss_pred eeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCCCC
Q 002778 137 PMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP 216 (882)
Q Consensus 137 ~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~s~ 216 (882)
. +.|+.++.|
T Consensus 231 s------------------------------------------savaav~vd---------------------------- 240 (350)
T KOG0641|consen 231 S------------------------------------------SAVAAVAVD---------------------------- 240 (350)
T ss_pred c------------------------------------------ceeEEEEEC----------------------------
Confidence 0 111111111
Q ss_pred ccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCC
Q 002778 217 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGS 296 (882)
Q Consensus 217 ~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~s 296 (882)
|.++.++ +|..|....+||+..++.++.|..|+..|.++.|||...+|.|+|.| ..|++=|+.
T Consensus 241 ----psgrll~----sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd-~~ikltdlq-------- 303 (350)
T KOG0641|consen 241 ----PSGRLLA----SGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYD-MKIKLTDLQ-------- 303 (350)
T ss_pred ----CCcceee----eccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEeccc-ceEEEeecc--------
Confidence 1122221 45667889999999999999999999999999999999999999995 469999985
Q ss_pred CCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECC
Q 002778 297 GNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 349 (882)
Q Consensus 297 G~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~ 349 (882)
| |.. +.+-..--+.+...+..+.|.|..--+.++|.|.|+.+|.++
T Consensus 304 g----dla---~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 304 G----DLA---HELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred c----chh---hcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 2 111 111111112233345558999999999999999999999875
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.8e-09 Score=116.07 Aligned_cols=189 Identities=19% Similarity=0.217 Sum_probs=127.7
Q ss_pred cCCeEEEEECCCCeEEEEEE-cCCcEEEEEEc----CCEEEE-EECCeEEEEECCCCceeEEEecCCCcccCCCCccccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCS----PRIVAV-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGIN 132 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S----~rlLAV-~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~ 132 (882)
+-++|++||..||+.+..++ ++..+..|+|. +..|.+ +.|+.|++||+++......+..-..| +.
T Consensus 48 Sngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~-----~~---- 118 (376)
T KOG1188|consen 48 SNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS-----GT---- 118 (376)
T ss_pred cCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC-----CC----
Confidence 56899999999999999998 67777788874 355555 56789999999987765555431111 00
Q ss_pred ccceeeEEcC--cEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCC
Q 002778 133 VGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLP 210 (882)
Q Consensus 133 ~~~g~lAlsp--R~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~p 210 (882)
.+..++.+. +.+|. |. +
T Consensus 119 -~f~~ld~nck~~ii~~------------------------------------------------Gt---------E--- 137 (376)
T KOG1188|consen 119 -PFICLDLNCKKNIIAC------------------------------------------------GT---------E--- 137 (376)
T ss_pred -cceEeeccCcCCeEEe------------------------------------------------cc---------c---
Confidence 012222211 11110 00 0
Q ss_pred CCCCCCccCCCccccccccccccCCCceEEEEECCCCcE-EEE-eccCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEec
Q 002778 211 DGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI-ISQ-FKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRI 287 (882)
Q Consensus 211 dgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~-v~~-f~aH~spIsaLaFSPdG-tlLATAS~dGt~IrVWdi 287 (882)
-...+-.|.+||++..+. +.. +..|.+.|+.|+|.|+. .+|+|||.|| .|+|||+
T Consensus 138 ---------------------~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDG-LvnlfD~ 195 (376)
T KOG1188|consen 138 ---------------------LTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDG-LVNLFDT 195 (376)
T ss_pred ---------------------cccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccc-eEEeeec
Confidence 012345699999988765 443 56899999999999965 7999999987 6999999
Q ss_pred CCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCC-CEEEEEeCCCeEEEEECCCCCCcc
Q 002778 288 MPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPFGGDS 355 (882)
Q Consensus 288 ~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg-~~LAsgS~DGTVhIWdI~~~gg~~ 355 (882)
+-. ...-..+..+. +.+.|..+.|..++ +.|.+-+..+|..+|+++......
T Consensus 196 ~~d-------------~EeDaL~~viN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~ 248 (376)
T KOG1188|consen 196 KKD-------------NEEDALLHVIN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEET 248 (376)
T ss_pred CCC-------------cchhhHHHhhc---ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhh
Confidence 632 01112333332 22469999999998 458888899999999999876444
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.5e-09 Score=122.65 Aligned_cols=108 Identities=19% Similarity=0.228 Sum_probs=78.8
Q ss_pred cCCCceEEEEECCCCcE---EEEeccCCC--CeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcc
Q 002778 233 MDNAGIVVVKDFVTRAI---ISQFKAHTS--PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH 307 (882)
Q Consensus 233 gs~dG~V~VWDl~s~~~---v~~f~aH~s--pIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~ 307 (882)
|..||.|++||..+... ...-.||.. .|++|+||+||++|+|-+.|++ ++|||+... .
T Consensus 335 gc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~t-LKvWDLrq~----------------k 397 (641)
T KOG0772|consen 335 GCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDT-LKVWDLRQF----------------K 397 (641)
T ss_pred cccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCc-eeeeecccc----------------c
Confidence 46789999999865432 233458988 8999999999999999999886 899999631 1
Q ss_pred cEEEEEEecccC-CcEEEEEEccCCCEEEEEeC------CCeEEEEECCCCCCccccc
Q 002778 308 VHLYKLHRGITS-ATIQDICFSHYSQWIAIVSS------KGTCHVFVLSPFGGDSGFQ 358 (882)
Q Consensus 308 ~~l~~L~RG~t~-a~I~sLaFSPDg~~LAsgS~------DGTVhIWdI~~~gg~~~l~ 358 (882)
..|... .|..+ -.-++++||||.+.|++|++ -|++.+||-.++.....+.
T Consensus 398 kpL~~~-tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~ 454 (641)
T KOG0772|consen 398 KPLNVR-TGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKID 454 (641)
T ss_pred cchhhh-cCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEec
Confidence 233322 23222 24578999999999999875 4678888887776555443
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.8e-08 Score=115.23 Aligned_cols=226 Identities=19% Similarity=0.124 Sum_probs=127.6
Q ss_pred CCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC--CEEEEEE-C---CeEEEEECCCCceeEEEecCCCcccCCCCccccc
Q 002778 60 PTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVGL-A---TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGIN 132 (882)
Q Consensus 60 p~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~--rlLAV~~-d---~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~ 132 (882)
...|.+||...+. .+.+. +...|.++++++ +.||.+. + .+|++||+.+++.. .+...+..
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~-~l~~~~g~----------- 249 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK-VVASFRGH----------- 249 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE-EEecCCCc-----------
Confidence 3689999986544 45554 667899999987 4666543 3 26999999887642 22211110
Q ss_pred ccceeeEEcC--cEEEEeCC---CeEec--cCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccc
Q 002778 133 VGYGPMAVGP--RWLAYASN---TLLLS--NSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYC 205 (882)
Q Consensus 133 ~~~g~lAlsp--R~LAyss~---~v~lw--dtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~ 205 (882)
....+++| ++|+|... ...|| +...-....++ ..
T Consensus 250 --~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt------------------------------------~~- 290 (429)
T PRK01742 250 --NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLT------------------------------------SG- 290 (429)
T ss_pred --cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeec------------------------------------cC-
Confidence 12457777 78887532 23333 21000000011 00
Q ss_pred cccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCC-cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEE
Q 002778 206 QELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINI 284 (882)
Q Consensus 206 ~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~-~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrV 284 (882)
.+.......+++++.+.+. .+.+|..+||++... .....+ .|.. ..++|+|||++||.++.+ . |.+
T Consensus 291 -----~~~~~~~~wSpDG~~i~f~---s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~-~-i~~ 357 (429)
T PRK01742 291 -----AGNNTEPSWSPDGQSILFT---SDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGD-N-VVK 357 (429)
T ss_pred -----CCCcCCEEECCCCCEEEEE---ECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCC-C-EEE
Confidence 0001122333444544332 245677788876432 222333 4443 457899999999988763 3 556
Q ss_pred EecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCC--CCCccccccccC
Q 002778 285 FRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP--FGGDSGFQTLSS 362 (882)
Q Consensus 285 Wdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~--~gg~~~l~~H~~ 362 (882)
||+.. | ....+..+. ...+++|||||++|+.++.+|.+.+|.+.. +.....+.+|..
T Consensus 358 ~Dl~~-------g-----------~~~~lt~~~---~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g 416 (429)
T PRK01742 358 QDLTS-------G-----------STEVLSSTF---LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDG 416 (429)
T ss_pred EECCC-------C-----------CeEEecCCC---CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCC
Confidence 89853 2 111221121 235688999999999999999999988743 333445666654
Q ss_pred CCCCCcccC
Q 002778 363 QGGDPYLFP 371 (882)
Q Consensus 363 ~~~~~~~sp 371 (882)
.+..+.++|
T Consensus 417 ~~~~p~wsp 425 (429)
T PRK01742 417 QVKFPAWSP 425 (429)
T ss_pred CCCCcccCC
Confidence 444444444
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.4e-08 Score=116.10 Aligned_cols=197 Identities=17% Similarity=0.194 Sum_probs=132.8
Q ss_pred cCCeEEEEECCCCeEEEEE-E--cCCcEEEEEEcC--CEEEEEECCeEEEEECCCCceeEEEecCCCcccCCCCcccccc
Q 002778 59 SPTAVRFYSFQSHCYEHVL-R--FRSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 133 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tL-k--f~s~V~sV~~S~--rlLAV~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~ 133 (882)
.++.|.||+++.+-+.... . -+..|-++++.. ++..+++++.|.-||+.+++.++.+.....
T Consensus 45 t~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg------------- 111 (691)
T KOG2048|consen 45 TDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGG------------- 111 (691)
T ss_pred cCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCc-------------
Confidence 4678999999886544433 2 346799999973 677778899999999999998877742211
Q ss_pred cceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCC
Q 002778 134 GYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS 213 (882)
Q Consensus 134 ~~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs 213 (882)
..+.||+.| .+..
T Consensus 112 ~IWsiai~p----------------------------------~~~~--------------------------------- 124 (691)
T KOG2048|consen 112 AIWSIAINP----------------------------------ENTI--------------------------------- 124 (691)
T ss_pred ceeEEEeCC----------------------------------ccce---------------------------------
Confidence 124444322 0000
Q ss_pred CCCccCCCccccccccccccCCCceEEEEECCCCcEE--EEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCc
Q 002778 214 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII--SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSC 291 (882)
Q Consensus 214 ~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v--~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~ 291 (882)
++ .+..||.+..++...+... ..|.--++.|.+|+|+|+|+.||+|+.|| .|++||+..
T Consensus 125 ------------l~----IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg-~Iriwd~~~-- 185 (691)
T KOG2048|consen 125 ------------LA----IGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDG-VIRIWDVKS-- 185 (691)
T ss_pred ------------EE----eecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCc-eEEEEEcCC--
Confidence 00 1234665666666555433 33444468999999999999999999977 699999964
Q ss_pred ccCCCCCCccccCCcccE-----EEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccccccccCCCCC
Q 002778 292 MRSGSGNHKYDWNSSHVH-----LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGD 366 (882)
Q Consensus 292 ~~~~sG~~~~d~sss~~~-----l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~H~~~~~~ 366 (882)
|. -.+ +-++.++ ....||+|.|=.|+ .||+|.+.|||..||-..+.....+.-|.+.+.+
T Consensus 186 -----~~--------t~~~~~~~~d~l~k~-~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~ 250 (691)
T KOG2048|consen 186 -----GQ--------TLHIITMQLDRLSKR-EPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLA 250 (691)
T ss_pred -----Cc--------eEEEeeecccccccC-CceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeE
Confidence 21 012 2223222 23469999998776 6889999999999999887766677777766544
Q ss_pred Ccc
Q 002778 367 PYL 369 (882)
Q Consensus 367 ~~~ 369 (882)
..+
T Consensus 251 Lav 253 (691)
T KOG2048|consen 251 LAV 253 (691)
T ss_pred EEE
Confidence 333
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-07 Score=98.86 Aligned_cols=181 Identities=24% Similarity=0.344 Sum_probs=129.2
Q ss_pred CCeEEEEECCC-CeEEEEEE-cCCcEEEEEEcC--CEEEEEE--CCeEEEEECCCCceeEEEecCCCcccCCCCcccccc
Q 002778 60 PTAVRFYSFQS-HCYEHVLR-FRSSVCMVRCSP--RIVAVGL--ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 133 (882)
Q Consensus 60 p~tVrlWDlkT-G~~V~tLk-f~s~V~sV~~S~--rlLAV~~--d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~ 133 (882)
++++++||..+ +..+..+. |...|..+.+++ +.++++. +..+++|++.+.+.+.++..|..+
T Consensus 133 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 200 (466)
T COG2319 133 DGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDP------------ 200 (466)
T ss_pred CccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCc------------
Confidence 67999999998 77777776 778899999987 4566554 778999999987776666543221
Q ss_pred cceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCC
Q 002778 134 GYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS 213 (882)
Q Consensus 134 ~~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs 213 (882)
... +++.++ +..++
T Consensus 201 -v~~-------~~~~~~---------------------------~~~~~------------------------------- 214 (466)
T COG2319 201 -VSS-------LAFSPD---------------------------GGLLI------------------------------- 214 (466)
T ss_pred -eEE-------EEEcCC---------------------------cceEE-------------------------------
Confidence 111 222211 00000
Q ss_pred CCCccCCCccccccccccccCCCceEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcc
Q 002778 214 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM 292 (882)
Q Consensus 214 ~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~-~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~ 292 (882)
. ++..++.|++||...+..+. .+..|.... ...|+|++.++++++.++. +++|++...
T Consensus 215 ---------------~--~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~-~~~~~~~~~-- 273 (466)
T COG2319 215 ---------------A--SGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGT-IRLWDLRSS-- 273 (466)
T ss_pred ---------------E--EecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCc-EEEeeecCC--
Confidence 0 12468889999999888887 799998886 4489999999998888665 999999641
Q ss_pred cCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCcc
Q 002778 293 RSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS 355 (882)
Q Consensus 293 ~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~ 355 (882)
. ..+..+ .++ ...|.++.|+|++..+++++.|+++++|++.......
T Consensus 274 ----~----------~~~~~~-~~~-~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 320 (466)
T COG2319 274 ----S----------SLLRTL-SGH-SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLS 320 (466)
T ss_pred ----C----------cEEEEE-ecC-CccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEE
Confidence 1 123333 343 4579999999999999999999999999887654433
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.9e-09 Score=120.56 Aligned_cols=135 Identities=16% Similarity=0.159 Sum_probs=94.6
Q ss_pred CCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECC---CCCEEEEEEcCCCEEEEEecCCCcccCCC
Q 002778 220 NSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP---SGTLLVTASVYGNNINIFRIMPSCMRSGS 296 (882)
Q Consensus 220 ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSP---dGtlLATAS~dGt~IrVWdi~p~~~~~~s 296 (882)
+++++.++ +|+.-|.++|||+.+.+....+.||.+.|.+|.||- .-++||+||. |..|+|||+...+..-++
T Consensus 468 Sp~gqhLA----sGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasr-dRlIHV~Dv~rny~l~qt 542 (1080)
T KOG1408|consen 468 SPDGQHLA----SGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASR-DRLIHVYDVKRNYDLVQT 542 (1080)
T ss_pred CCCcceec----ccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccC-CceEEEEecccccchhhh
Confidence 34455544 578889999999999998899999999999999985 2469999998 778999999754321000
Q ss_pred -CCCccc-----cCCcc--cE--------------------EEEEEecccC---CcEEEEEEccCCCEEEEEeCCCeEEE
Q 002778 297 -GNHKYD-----WNSSH--VH--------------------LYKLHRGITS---ATIQDICFSHYSQWIAIVSSKGTCHV 345 (882)
Q Consensus 297 -G~~~~d-----~sss~--~~--------------------l~~L~RG~t~---a~I~sLaFSPDg~~LAsgS~DGTVhI 345 (882)
..++.. +.++. ++ ...+.|++.. ..+++++.-|..+++++++-|..|+|
T Consensus 543 ld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrniri 622 (1080)
T KOG1408|consen 543 LDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRI 622 (1080)
T ss_pred hcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEE
Confidence 000000 00000 00 0112233321 36999999999999999999999999
Q ss_pred EECCCCCCcccccc
Q 002778 346 FVLSPFGGDSGFQT 359 (882)
Q Consensus 346 WdI~~~gg~~~l~~ 359 (882)
|+++.++....|++
T Consensus 623 f~i~sgKq~k~FKg 636 (1080)
T KOG1408|consen 623 FDIESGKQVKSFKG 636 (1080)
T ss_pred Eeccccceeeeecc
Confidence 99998877766643
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.6e-09 Score=114.99 Aligned_cols=176 Identities=18% Similarity=0.240 Sum_probs=108.1
Q ss_pred ccCCeEEEEECCCCeEEEEEEcCCcEEEEEEcCCEEEEE-ECCeEEEEECCCCceeEEEecCCCcccCCCCcccccccce
Q 002778 58 NSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 136 (882)
Q Consensus 58 ~sp~tVrlWDlkTG~~V~tLkf~s~V~sV~~S~rlLAV~-~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g 136 (882)
..+++|+|||.+....+.++.-...|+++..+..+|+|| .+.+|.+||+++++.-++.++.+. +..+.
T Consensus 113 sWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~l-----------kyqtR 181 (323)
T KOG1036|consen 113 SWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSL-----------KYQTR 181 (323)
T ss_pred ccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccc-----------eeEEE
Confidence 378999999999877777777777999999999888885 567899999999887665543322 11223
Q ss_pred eeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCC---
Q 002778 137 PMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS--- 213 (882)
Q Consensus 137 ~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs--- 213 (882)
.+++-|.-=+|. +.. -.|.+.+.|--++ +-++. |++.-.|.....++.
T Consensus 182 ~v~~~pn~eGy~-----~sS--------------------ieGRVavE~~d~s--~~~~s--kkyaFkCHr~~~~~~~~~ 232 (323)
T KOG1036|consen 182 CVALVPNGEGYV-----VSS--------------------IEGRVAVEYFDDS--EEAQS--KKYAFKCHRLSEKDTEII 232 (323)
T ss_pred EEEEecCCCceE-----EEe--------------------ecceEEEEccCCc--hHHhh--hceeEEeeecccCCceEE
Confidence 333322111111 111 1122222221111 00100 111112221111111
Q ss_pred --CCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEc
Q 002778 214 --SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV 277 (882)
Q Consensus 214 --~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~ 277 (882)
..++.+.+-.+.++ +|+.||.|.+||+.+.+.+.+|..-...|.+|+|+.+|.+||+|+.
T Consensus 233 yPVNai~Fhp~~~tfa----TgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 233 YPVNAIAFHPIHGTFA----TGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EEeceeEeccccceEE----ecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 11233333233322 7899999999999999999999888788999999999999999986
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-08 Score=114.41 Aligned_cols=200 Identities=17% Similarity=0.144 Sum_probs=130.7
Q ss_pred cccccccCccCCCCCcccc---cCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC---CEEEEE-ECCeEEEEECCCCce
Q 002778 40 HLGGVRDGMMDSQSGNCVN---SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP---RIVAVG-LATQIYCFDALTLEN 111 (882)
Q Consensus 40 ~~~~v~~~~~~~~~~~~~~---sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~---rlLAV~-~d~qI~IWDa~T~e~ 111 (882)
|.-+|-.-+.+....|.++ .++||++||+.+|++..++. |...|.++.+.+ .+|+.| .+++|.++|.+...+
T Consensus 242 HTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~ 321 (463)
T KOG0270|consen 242 HTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN 321 (463)
T ss_pred chHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccc
Confidence 3334433333433444443 57999999999999999999 677899999986 566654 588999999875211
Q ss_pred eEEEecCCCcccCCCCcccccccceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchh
Q 002778 112 KFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSK 191 (882)
Q Consensus 112 l~tL~t~p~p~~~~~~~~g~~~~~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk 191 (882)
. . . .|=.-+.--...|+- ++
T Consensus 322 s-------~-----------------~----~wk~~g~VEkv~w~~----------------~s---------------- 341 (463)
T KOG0270|consen 322 S-------G-----------------K----EWKFDGEVEKVAWDP----------------HS---------------- 341 (463)
T ss_pred c-------C-----------------c----eEEeccceEEEEecC----------------CC----------------
Confidence 0 0 0 010000001122320 00
Q ss_pred hhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCC-cEEEEeccCCCCeEEEEECCCC-
Q 002778 192 QFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDPSG- 269 (882)
Q Consensus 192 ~la~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~-~~v~~f~aH~spIsaLaFSPdG- 269 (882)
...+ + .+..||+|+-+|+++. +++.+++||.++|++|++++.-
T Consensus 342 ------------------------e~~f--------~---~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p 386 (463)
T KOG0270|consen 342 ------------------------ENSF--------F---VSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTP 386 (463)
T ss_pred ------------------------ceeE--------E---EecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCC
Confidence 0000 0 1246899999999875 8999999999999999999864
Q ss_pred CEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCC-CEEEEEeCCCeEEEEEC
Q 002778 270 TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVL 348 (882)
Q Consensus 270 tlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg-~~LAsgS~DGTVhIWdI 348 (882)
.+|+|+|.++ .++||++.... + ...+.+..++- +..|.++.|+- -+||.|+..+-++|||+
T Consensus 387 ~~l~t~s~d~-~Vklw~~~~~~-----~------~~v~~~~~~~~------rl~c~~~~~~~a~~la~GG~k~~~~vwd~ 448 (463)
T KOG0270|consen 387 GLLSTASTDK-VVKLWKFDVDS-----P------KSVKEHSFKLG------RLHCFALDPDVAFTLAFGGEKAVLRVWDI 448 (463)
T ss_pred cceeeccccc-eEEEEeecCCC-----C------ccccccccccc------ceeecccCCCcceEEEecCccceEEEeec
Confidence 5889999966 59999995321 0 01112333332 26778888875 46888889999999999
Q ss_pred CCCC
Q 002778 349 SPFG 352 (882)
Q Consensus 349 ~~~g 352 (882)
.+..
T Consensus 449 ~~~~ 452 (463)
T KOG0270|consen 449 FTNS 452 (463)
T ss_pred ccCh
Confidence 7653
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.5e-08 Score=106.28 Aligned_cols=237 Identities=17% Similarity=0.123 Sum_probs=146.9
Q ss_pred CCCCccc---ccCCeEEEEECCC-CeEEEEE--EcCCcEEEEEEcC---CEEEEEECCeEEEEECCCCceeEEEecCCCc
Q 002778 51 SQSGNCV---NSPTAVRFYSFQS-HCYEHVL--RFRSSVCMVRCSP---RIVAVGLATQIYCFDALTLENKFSVLTYPVP 121 (882)
Q Consensus 51 ~~~~~~~---~sp~tVrlWDlkT-G~~V~tL--kf~s~V~sV~~S~---rlLAV~~d~qI~IWDa~T~e~l~tL~t~p~p 121 (882)
++..|.+ +.+++||+|++.. |..+-.- .+.++|++|+++. ++.+.+.|+++++||+.+++ ..++..|..|
T Consensus 37 P~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~p 115 (347)
T KOG0647|consen 37 PQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAP 115 (347)
T ss_pred cccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccc
Confidence 3444444 4789999999976 6666533 3889999999986 34444568999999999995 4556666664
Q ss_pred ccCCCCcccccccceeeEE-cC---cEEEEeC--CCeEeccCCCCCC-ccCCCCCCCCCcCCCCCccEEEeeccchhhhh
Q 002778 122 QLAGQGAVGINVGYGPMAV-GP---RWLAYAS--NTLLLSNSGRLSP-QNLTPSGVSPSTSPGGSSLVARYAMEHSKQFA 194 (882)
Q Consensus 122 ~~~~~~~~g~~~~~g~lAl-sp---R~LAyss--~~v~lwdtG~vs~-q~lt~~~vs~s~SP~~GslVA~~A~essk~la 194 (882)
.. .+.+ .+ ..|+..+ .+++.||+-.-.| ..+.. |+ .-|++|--+.+
T Consensus 116 vk-------------t~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L--------Pe-----RvYa~Dv~~pm- 168 (347)
T KOG0647|consen 116 VK-------------TCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL--------PE-----RVYAADVLYPM- 168 (347)
T ss_pred ee-------------EEEEecCCCcceeEecccccceeecccCCCCeeeeeec--------cc-----eeeehhccCce-
Confidence 22 2221 11 3456653 5789998621000 00000 00 01222211110
Q ss_pred ccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCC----eEEEEECCCCC
Q 002778 195 AGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSP----ISALCFDPSGT 270 (882)
Q Consensus 195 ~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~sp----IsaLaFSPdGt 270 (882)
++ .+-.+..|.+|++.++. ..|+.+.+| +.+|+.-+|..
T Consensus 169 --------------------------------~v---Vata~r~i~vynL~n~~--te~k~~~SpLk~Q~R~va~f~d~~ 211 (347)
T KOG0647|consen 169 --------------------------------AV---VATAERHIAVYNLENPP--TEFKRIESPLKWQTRCVACFQDKD 211 (347)
T ss_pred --------------------------------eE---EEecCCcEEEEEcCCCc--chhhhhcCcccceeeEEEEEecCC
Confidence 01 12346779999998753 455555554 67888888888
Q ss_pred EEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecc--cC---CcEEEEEEccCCCEEEEEeCCCeEEE
Q 002778 271 LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI--TS---ATIQDICFSHYSQWIAIVSSKGTCHV 345 (882)
Q Consensus 271 lLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~--t~---a~I~sLaFSPDg~~LAsgS~DGTVhI 345 (882)
..|-||..|. +-|..+.+.- ....-.++-+|.. .. -.|.+|+|.|.-..|++.++|||+-.
T Consensus 212 ~~alGsiEGr-v~iq~id~~~-------------~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~F 277 (347)
T KOG0647|consen 212 GFALGSIEGR-VAIQYIDDPN-------------PKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSF 277 (347)
T ss_pred ceEeeeecce-EEEEecCCCC-------------ccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEE
Confidence 7899999897 6788886410 0001223333421 11 24789999999999999999999999
Q ss_pred EECCCCCCccccccccCCCCC
Q 002778 346 FVLSPFGGDSGFQTLSSQGGD 366 (882)
Q Consensus 346 WdI~~~gg~~~l~~H~~~~~~ 366 (882)
||-+......+...|..++.+
T Consensus 278 WDkdar~kLk~s~~~~qpItc 298 (347)
T KOG0647|consen 278 WDKDARTKLKTSETHPQPITC 298 (347)
T ss_pred ecchhhhhhhccCcCCCccce
Confidence 998876655555666554433
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-07 Score=107.73 Aligned_cols=272 Identities=13% Similarity=0.141 Sum_probs=158.8
Q ss_pred CeEEEEECCCCeEEEEEE-c----CCcEEEEEEcC--CEEEEEECCeEEEEECCCCceeEEEecCCCcccCCCCcccccc
Q 002778 61 TAVRFYSFQSHCYEHVLR-F----RSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 133 (882)
Q Consensus 61 ~tVrlWDlkTG~~V~tLk-f----~s~V~sV~~S~--rlLAV~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~ 133 (882)
+.+.||+++++..++.-. | +..|.+|.|.+ +.|..-.++.|.||+..+.+..++...|+. ++
T Consensus 222 ~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~g---------gv-- 290 (626)
T KOG2106|consen 222 GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDG---------GV-- 290 (626)
T ss_pred ceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCC---------ce--
Confidence 678999999999887653 2 35699999976 455444567899999988776666655554 11
Q ss_pred cceeeEEcC-cEEEEeC--CCeEeccCCCCCCccCCCCC-CCC--CcCCCCCccEEEeeccchhhhhcccc-----cccc
Q 002778 134 GYGPMAVGP-RWLAYAS--NTLLLSNSGRLSPQNLTPSG-VSP--STSPGGSSLVARYAMEHSKQFAAGLS-----KTLS 202 (882)
Q Consensus 134 ~~g~lAlsp-R~LAyss--~~v~lwdtG~vs~q~lt~~~-vs~--s~SP~~GslVA~~A~essk~la~Gli-----ktLs 202 (882)
+..+.+.. ..|. .+ ..+.+|+..-...+....|. .-+ .-.+..+.+.. ....-.+..|-+ .+..
T Consensus 291 -~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~v---GTtrN~iL~Gt~~~~f~~~v~ 365 (626)
T KOG2106|consen 291 -FSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILV---GTTRNFILQGTLENGFTLTVQ 365 (626)
T ss_pred -EEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEE---eeccceEEEeeecCCceEEEE
Confidence 23333333 4444 43 25778873111111111110 000 00011111110 000000111110 0001
Q ss_pred ccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEE
Q 002778 203 KYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNI 282 (882)
Q Consensus 203 ~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~I 282 (882)
++..++. . +..-++...+ .+.++|+.|+||+ ..+++-+. --..|+.|+.|+|.| .||.+...|+ -
T Consensus 366 gh~delw----g--la~hps~~q~----~T~gqdk~v~lW~--~~k~~wt~-~~~d~~~~~~fhpsg-~va~Gt~~G~-w 430 (626)
T KOG2106|consen 366 GHGDELW----G--LATHPSKNQL----LTCGQDKHVRLWN--DHKLEWTK-IIEDPAECADFHPSG-VVAVGTATGR-W 430 (626)
T ss_pred eccccee----e--EEcCCChhhe----eeccCcceEEEcc--CCceeEEE-EecCceeEeeccCcc-eEEEeeccce-E
Confidence 1111110 0 0111111111 1678999999999 33443222 235789999999999 8998988887 5
Q ss_pred EEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCcccc-cccc
Q 002778 283 NIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGF-QTLS 361 (882)
Q Consensus 283 rVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l-~~H~ 361 (882)
.|.|+.+ +.+-.++. .+++|..++|||||.+||+||.|+.|.||.++..|..... .-|.
T Consensus 431 ~V~d~e~------------------~~lv~~~~--d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~ 490 (626)
T KOG2106|consen 431 FVLDTET------------------QDLVTIHT--DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCS 490 (626)
T ss_pred EEEeccc------------------ceeEEEEe--cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeec
Confidence 6888854 24444443 2678999999999999999999999999999987765533 3332
Q ss_pred CCCCCCcccCCCCCCcccCCCCccccccc
Q 002778 362 SQGGDPYLFPVLSLPWWCTSSGISEQQCV 390 (882)
Q Consensus 362 ~~~~~~~~sp~~~lpw~~~s~~~~~Q~~~ 390 (882)
- +|+..|-|-..+.+...|.-+
T Consensus 491 ------g-s~ithLDwS~Ds~~~~~~S~d 512 (626)
T KOG2106|consen 491 ------G-SPITHLDWSSDSQFLVSNSGD 512 (626)
T ss_pred ------C-ceeEEeeecCCCceEEeccCc
Confidence 1 778888888888887766543
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.7e-09 Score=124.01 Aligned_cols=246 Identities=17% Similarity=0.146 Sum_probs=136.3
Q ss_pred cCCeEEEEECCCCeEEEEEEcCCcEEEEEEcC----CEEEEEECCeEEEEECCCCceeEEEecCCCcccCCCCccccccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP----RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 134 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLkf~s~V~sV~~S~----rlLAV~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~ 134 (882)
.+++||||.+.||.|++++.|.+.|.+|+|+| -+|||+.+..+.|-+..-|..+..-.+..
T Consensus 420 dDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~e--------------- 484 (733)
T KOG0650|consen 420 DDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKE--------------- 484 (733)
T ss_pred CCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhh---------------
Confidence 46999999999999999999999999999997 37888887776665544342221111100
Q ss_pred ceeeEEcCcEEEEeCCCeEeccCCCC-------CCccCCCCCCCCCcCCCCCccEEEeeccch-hhhhcccccccccccc
Q 002778 135 YGPMAVGPRWLAYASNTLLLSNSGRL-------SPQNLTPSGVSPSTSPGGSSLVARYAMEHS-KQFAAGLSKTLSKYCQ 206 (882)
Q Consensus 135 ~g~lAlspR~LAyss~~v~lwdtG~v-------s~q~lt~~~vs~s~SP~~GslVA~~A~ess-k~la~GliktLs~~~~ 206 (882)
.++-.| -.+....++..|..+.. ....-.+..+.--+--..|..+|.++.+.+ +.+ ++.+|++...
T Consensus 485 --ll~~~~-~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V---liHQLSK~~s 558 (733)
T KOG0650|consen 485 --LLASAP-NESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV---LIHQLSKRKS 558 (733)
T ss_pred --hhhcCC-CccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE---EEEecccccc
Confidence 000000 00001112223321100 000000000000000122334443333221 111 1112222221
Q ss_pred cc---CCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEE
Q 002778 207 EL---LPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNIN 283 (882)
Q Consensus 207 ~l---~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~Ir 283 (882)
.. ...|......|-+....+-+ .....|+|||+....+++.+..-...|+.|+.+|.|.-|+.++.++. +.
T Consensus 559 Q~PF~kskG~vq~v~FHPs~p~lfV-----aTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k-~~ 632 (733)
T KOG0650|consen 559 QSPFRKSKGLVQRVKFHPSKPYLFV-----ATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKK-MC 632 (733)
T ss_pred cCchhhcCCceeEEEecCCCceEEE-----EeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCe-eE
Confidence 10 00111111112221112111 23467999999988888888877889999999999999999998765 77
Q ss_pred EEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECC
Q 002778 284 IFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 349 (882)
Q Consensus 284 VWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~ 349 (882)
.||+.-. ...|+..|-|. ..|++|+|.+-=-.+|++|+|||++||--.
T Consensus 633 WfDldls-----------------skPyk~lr~H~-~avr~Va~H~ryPLfas~sdDgtv~Vfhg~ 680 (733)
T KOG0650|consen 633 WFDLDLS-----------------SKPYKTLRLHE-KAVRSVAFHKRYPLFASGSDDGTVIVFHGM 680 (733)
T ss_pred EEEcccC-----------------cchhHHhhhhh-hhhhhhhhccccceeeeecCCCcEEEEeee
Confidence 9998531 12333334444 459999999988899999999999999543
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.1e-08 Score=114.69 Aligned_cols=220 Identities=17% Similarity=0.213 Sum_probs=133.4
Q ss_pred cCCeEEEEEC--CCCeEEEEEEcC-CcEEEEEEcC--C-EEEEEE-CCeEEEEECCCCceeE--EEecCCCcccCCCCcc
Q 002778 59 SPTAVRFYSF--QSHCYEHVLRFR-SSVCMVRCSP--R-IVAVGL-ATQIYCFDALTLENKF--SVLTYPVPQLAGQGAV 129 (882)
Q Consensus 59 sp~tVrlWDl--kTG~~V~tLkf~-s~V~sV~~S~--r-lLAV~~-d~qI~IWDa~T~e~l~--tL~t~p~p~~~~~~~~ 129 (882)
.+++++||-+ ++...++.+.|. .+|...+|.+ . .++++. ..-.|.||+.+.+... .+.+...+
T Consensus 233 ~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~-------- 304 (514)
T KOG2055|consen 233 LDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEK-------- 304 (514)
T ss_pred CCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccc--------
Confidence 4688999965 566677777754 5788878765 3 555544 3458999998877432 22222211
Q ss_pred cccccceeeEEcC--cEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccc
Q 002778 130 GINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQE 207 (882)
Q Consensus 130 g~~~~~g~lAlsp--R~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~ 207 (882)
....+.+++ .+||..++.-.| .+ | .. .++++..+
T Consensus 305 ----~~e~FeVShd~~fia~~G~~G~I------~l--L--------------------ha-kT~eli~s----------- 340 (514)
T KOG2055|consen 305 ----SMERFEVSHDSNFIAIAGNNGHI------HL--L--------------------HA-KTKELITS----------- 340 (514)
T ss_pred ----hhheeEecCCCCeEEEcccCceE------Ee--e--------------------hh-hhhhhhhe-----------
Confidence 134556666 788877652111 00 0 00 00111111
Q ss_pred cCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCC--eEEEEECCCCCEEEEEEcCCCEEEEE
Q 002778 208 LLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSP--ISALCFDPSGTLLVTASVYGNNINIF 285 (882)
Q Consensus 208 l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~sp--IsaLaFSPdGtlLATAS~dGt~IrVW 285 (882)
+.-.|....+.++++++-+.+ .+.+|.|.+||+....++..|.-- +. =+.+|.|++|.+|||||..| .++||
T Consensus 341 ~KieG~v~~~~fsSdsk~l~~----~~~~GeV~v~nl~~~~~~~rf~D~-G~v~gts~~~S~ng~ylA~GS~~G-iVNIY 414 (514)
T KOG2055|consen 341 FKIEGVVSDFTFSSDSKELLA----SGGTGEVYVWNLRQNSCLHRFVDD-GSVHGTSLCISLNGSYLATGSDSG-IVNIY 414 (514)
T ss_pred eeeccEEeeEEEecCCcEEEE----EcCCceEEEEecCCcceEEEEeec-CccceeeeeecCCCceEEeccCcc-eEEEe
Confidence 111222333444455555432 246789999999999999888732 22 25688899999999999876 69999
Q ss_pred ecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeC--CCeEEEEECC
Q 002778 286 RIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS--KGTCHVFVLS 349 (882)
Q Consensus 286 di~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~--DGTVhIWdI~ 349 (882)
|...... +...+.+..+. ..+ ..|.+|.|++|++.||.+|. +.+++|--+.
T Consensus 415 d~~s~~~-----------s~~PkPik~~d-NLt-t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvP 467 (514)
T KOG2055|consen 415 DGNSCFA-----------STNPKPIKTVD-NLT-TAITSLQFNHDAQILAIASRVKKNALRLVHVP 467 (514)
T ss_pred ccchhhc-----------cCCCCchhhhh-hhh-eeeeeeeeCcchhhhhhhhhccccceEEEecc
Confidence 9754211 11223444432 122 24999999999999999985 5677775554
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1e-08 Score=110.82 Aligned_cols=185 Identities=19% Similarity=0.194 Sum_probs=114.9
Q ss_pred CCEEEEE-ECCeEEEEECCCCceeEEEecCCCcccCCCCcccccccceeeEEcC--cEEEEeCC--CeEeccCCCCCCcc
Q 002778 90 PRIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASN--TLLLSNSGRLSPQN 164 (882)
Q Consensus 90 ~rlLAV~-~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g~lAlsp--R~LAyss~--~v~lwdtG~vs~q~ 164 (882)
..+|+++ .+..|.+||+. |+.+.++.+.... ..-.|++| |+||.++- .+.+|..
T Consensus 199 ~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~-------------n~~aavSP~GRFia~~gFTpDVkVwE~------- 257 (420)
T KOG2096|consen 199 AKYIMSASLDTKICLWDLK-GQLLQSIDTNQSS-------------NYDAAVSPDGRFIAVSGFTPDVKVWEP------- 257 (420)
T ss_pred ceEEEEecCCCcEEEEecC-Cceeeeecccccc-------------ccceeeCCCCcEEEEecCCCCceEEEE-------
Confidence 3566665 46789999998 8999999875431 13467888 99998763 4677752
Q ss_pred CCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEEC
Q 002778 165 LTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDF 244 (882)
Q Consensus 165 lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl 244 (882)
.|.++...+-+... -.|.+|... ...++|++++...+ +.+.||+++|||+
T Consensus 258 -------------------~f~kdG~fqev~rv-f~LkGH~sa------V~~~aFsn~S~r~v----tvSkDG~wriwdt 307 (420)
T KOG2096|consen 258 -------------------IFTKDGTFQEVKRV-FSLKGHQSA------VLAAAFSNSSTRAV----TVSKDGKWRIWDT 307 (420)
T ss_pred -------------------EeccCcchhhhhhh-heeccchhh------eeeeeeCCCcceeE----EEecCCcEEEeec
Confidence 01111111101000 123333321 11233444344332 5689999999998
Q ss_pred CC-------CcEEEEec----c-CCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEE
Q 002778 245 VT-------RAIISQFK----A-HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 312 (882)
Q Consensus 245 ~s-------~~~v~~f~----a-H~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~ 312 (882)
.- .+.++.+. + -..|+ .|+++|+|..||.+. |+.|++|...+ | ..+-.
T Consensus 308 dVrY~~~qDpk~Lk~g~~pl~aag~~p~-RL~lsP~g~~lA~s~--gs~l~~~~se~-------g----------~~~~~ 367 (420)
T KOG2096|consen 308 DVRYEAGQDPKILKEGSAPLHAAGSEPV-RLELSPSGDSLAVSF--GSDLKVFASED-------G----------KDYPE 367 (420)
T ss_pred cceEecCCCchHhhcCCcchhhcCCCce-EEEeCCCCcEEEeec--CCceEEEEccc-------C----------ccchh
Confidence 53 12333332 1 23355 799999999999776 67799999865 3 23333
Q ss_pred EEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEE
Q 002778 313 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV 347 (882)
Q Consensus 313 L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWd 347 (882)
+.+- +...|.+|+|++||+++|+++++ .++|+.
T Consensus 368 ~e~~-h~~~Is~is~~~~g~~~atcGdr-~vrv~~ 400 (420)
T KOG2096|consen 368 LEDI-HSTTISSISYSSDGKYIATCGDR-YVRVIR 400 (420)
T ss_pred HHHh-hcCceeeEEecCCCcEEeeecce-eeeeec
Confidence 4433 33469999999999999999855 678865
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=5e-08 Score=113.48 Aligned_cols=101 Identities=17% Similarity=0.153 Sum_probs=84.5
Q ss_pred CCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEE
Q 002778 234 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 313 (882)
Q Consensus 234 s~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L 313 (882)
+.+|.|.-||+.+++.+..+..-.++|+++|.+|.++.|+.++.+| ++..+++.| + +..|+.
T Consensus 87 g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddG-vl~~~s~~p-------~----------~I~~~r 148 (691)
T KOG2048|consen 87 GLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDG-VLYDFSIGP-------D----------KITYKR 148 (691)
T ss_pred cCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCc-eEEEEecCC-------c----------eEEEEe
Confidence 4578999999999999999999999999999999999999999888 688888865 2 333432
Q ss_pred EecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCC
Q 002778 314 HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 352 (882)
Q Consensus 314 ~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~g 352 (882)
.-+-..++|.+|+|+|++..||+||.||-|++||+....
T Consensus 149 ~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~ 187 (691)
T KOG2048|consen 149 SLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQ 187 (691)
T ss_pred ecccccceEEEEEecCCccEEEecccCceEEEEEcCCCc
Confidence 222233689999999999999999999999999997653
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.8e-09 Score=114.16 Aligned_cols=113 Identities=17% Similarity=0.247 Sum_probs=85.6
Q ss_pred ccCCCceEEEEECCCCcE---EEEeccCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcc
Q 002778 232 DMDNAGIVVVKDFVTRAI---ISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH 307 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~---v~~f~aH~spIsaLaFSPdG-tlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~ 307 (882)
+|+..+.|++|...++.- ..-|.+|+..|-.|++||.- ++|||||.||+ |+|||++..+ ..
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dgs-IrIWDiRs~~--------------~~ 293 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGS-IRIWDIRSGP--------------KK 293 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCce-EEEEEecCCC--------------cc
Confidence 567778899999988753 24577899999999999965 58999999876 9999996411 00
Q ss_pred cEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCc---cccccccC
Q 002778 308 VHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD---SGFQTLSS 362 (882)
Q Consensus 308 ~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~---~~l~~H~~ 362 (882)
..+.. -.+++.|.-|+|+-+-.+||+|++|||++||||...... ..+.-|..
T Consensus 294 ~~~~~---kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~ 348 (440)
T KOG0302|consen 294 AAVST---KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKA 348 (440)
T ss_pred ceeEe---eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccC
Confidence 12222 224467999999999889999999999999999876443 24566653
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.3e-09 Score=117.39 Aligned_cols=106 Identities=19% Similarity=0.214 Sum_probs=83.9
Q ss_pred CCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEE
Q 002778 235 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 314 (882)
Q Consensus 235 ~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~ 314 (882)
..|.+.+|.+.+|..+..+.+|-.+|++|.|+-||.+|+|||.||. |.+|++..-.+. +...+...++.+.
T Consensus 101 i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~-V~vW~l~~lv~a--------~~~~~~~p~~~f~ 171 (476)
T KOG0646|consen 101 ISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGA-VLVWLLTDLVSA--------DNDHSVKPLHIFS 171 (476)
T ss_pred ccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCcc-EEEEEEEeeccc--------ccCCCccceeeec
Confidence 5688999999999999999999999999999999999999999886 889998542111 1111334566663
Q ss_pred ecccCCcEEEEEEccC--CCEEEEEeCCCeEEEEECCCC
Q 002778 315 RGITSATIQDICFSHY--SQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 315 RG~t~a~I~sLaFSPD--g~~LAsgS~DGTVhIWdI~~~ 351 (882)
+|+ -.|+++-..+- ..+|.++|.|.||+|||+...
T Consensus 172 -~Ht-lsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g 208 (476)
T KOG0646|consen 172 -DHT-LSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG 208 (476)
T ss_pred -cCc-ceeEEEEecCCCccceEEEecCCceEEEEEeccc
Confidence 343 46888876654 578999999999999999865
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.2e-08 Score=114.92 Aligned_cols=122 Identities=15% Similarity=0.196 Sum_probs=90.9
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEE
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~ 311 (882)
+++..|.|+|||+....+.+.++.|++.|+++.++-...+||+.+..| .|.|..+.+ + ....
T Consensus 96 sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gG-diiih~~~t-------~----------~~tt 157 (673)
T KOG4378|consen 96 SGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGG-DIIIHGTKT-------K----------QKTT 157 (673)
T ss_pred ccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCC-cEEEEeccc-------C----------cccc
Confidence 467889999999998778888999999999999999999999999855 477888864 2 1222
Q ss_pred EEEecccCCcEEEEEEccCCCE-EEEEeCCCeEEEEECCCCCCcc-ccccccCCCCCCcccCC
Q 002778 312 KLHRGITSATIQDICFSHYSQW-IAIVSSKGTCHVFVLSPFGGDS-GFQTLSSQGGDPYLFPV 372 (882)
Q Consensus 312 ~L~RG~t~a~I~sLaFSPDg~~-LAsgS~DGTVhIWdI~~~gg~~-~l~~H~~~~~~~~~sp~ 372 (882)
+|.-+ ....|.-|.|||-.++ |.++|++|+|||||++-..-.. ....|.++..+..++|.
T Consensus 158 ~f~~~-sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfsps 219 (673)
T KOG4378|consen 158 TFTID-SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPS 219 (673)
T ss_pred ceecC-CCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCC
Confidence 23212 1235778999999886 5568999999999997543332 34677766666666654
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=8.7e-09 Score=109.26 Aligned_cols=69 Identities=23% Similarity=0.302 Sum_probs=54.8
Q ss_pred eEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeC
Q 002778 260 ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS 339 (882)
Q Consensus 260 IsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~ 339 (882)
|..+.+-||++.||||+.|++ ||||.-++ + ..+..|. .+.+.|++||||||...+|++|.
T Consensus 254 v~gvrIRpD~KIlATAGWD~R-iRVyswrt-------l----------~pLAVLk--yHsagvn~vAfspd~~lmAaask 313 (323)
T KOG0322|consen 254 VSGVRIRPDGKILATAGWDHR-IRVYSWRT-------L----------NPLAVLK--YHSAGVNAVAFSPDCELMAAASK 313 (323)
T ss_pred ccceEEccCCcEEeecccCCc-EEEEEecc-------C----------Cchhhhh--hhhcceeEEEeCCCCchhhhccC
Confidence 444556699999999999876 99999864 2 2344432 23467999999999999999999
Q ss_pred CCeEEEEEC
Q 002778 340 KGTCHVFVL 348 (882)
Q Consensus 340 DGTVhIWdI 348 (882)
|++|-+|++
T Consensus 314 D~rISLWkL 322 (323)
T KOG0322|consen 314 DARISLWKL 322 (323)
T ss_pred CceEEeeec
Confidence 999999987
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2e-09 Score=130.57 Aligned_cols=102 Identities=17% Similarity=0.163 Sum_probs=78.5
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCC--CeEEEEECCCC-CEEEEEEcCCC--EEEEEecCCCcccCCCCCCccccCCcc
Q 002778 233 MDNAGIVVVKDFVTRAIISQFKAHTS--PISALCFDPSG-TLLVTASVYGN--NINIFRIMPSCMRSGSGNHKYDWNSSH 307 (882)
Q Consensus 233 gs~dG~V~VWDl~s~~~v~~f~aH~s--pIsaLaFSPdG-tlLATAS~dGt--~IrVWdi~p~~~~~~sG~~~~d~sss~ 307 (882)
++.+|.+.|||++..+.+..|.-|.. .++.|+|+|++ +.|++|+.|++ +|.+||++-. .
T Consensus 180 ~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a--------------s-- 243 (1049)
T KOG0307|consen 180 GSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA--------------S-- 243 (1049)
T ss_pred cCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc--------------C--
Confidence 45678999999998888877776644 47899999988 57777777654 6999998631 1
Q ss_pred cEEEEEEecccCCcEEEEEEccCC-CEEEEEeCCCeEEEEECCCCC
Q 002778 308 VHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPFG 352 (882)
Q Consensus 308 ~~l~~L~RG~t~a~I~sLaFSPDg-~~LAsgS~DGTVhIWdI~~~g 352 (882)
..+.++ +||.. -|.+|+|++.+ ++|+++..|+.|.+|+.++..
T Consensus 244 sP~k~~-~~H~~-GilslsWc~~D~~lllSsgkD~~ii~wN~~tgE 287 (1049)
T KOG0307|consen 244 SPLKIL-EGHQR-GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGE 287 (1049)
T ss_pred Cchhhh-ccccc-ceeeeccCCCCchhhhcccCCCCeeEecCCCce
Confidence 133444 46554 48999999877 899999999999999998743
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=5e-07 Score=98.85 Aligned_cols=262 Identities=13% Similarity=0.149 Sum_probs=137.6
Q ss_pred cCCeEEEEECCC-Ce--EEEEEEcCCcEEEEEEcC--CEEEEEE--CCeEEEEECC-CCceeEEEecCCCcccCCCCccc
Q 002778 59 SPTAVRFYSFQS-HC--YEHVLRFRSSVCMVRCSP--RIVAVGL--ATQIYCFDAL-TLENKFSVLTYPVPQLAGQGAVG 130 (882)
Q Consensus 59 sp~tVrlWDlkT-G~--~V~tLkf~s~V~sV~~S~--rlLAV~~--d~qI~IWDa~-T~e~l~tL~t~p~p~~~~~~~~g 130 (882)
.++.|++||+.+ |+ .+.++...+....+++++ ++|.++. ++.|.+|++. +++ +..+...+.+ +
T Consensus 10 ~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~-l~~~~~~~~~--------~ 80 (330)
T PRK11028 10 ESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA-LTFAAESPLP--------G 80 (330)
T ss_pred CCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCc-eEEeeeecCC--------C
Confidence 467899999974 44 556666656677788875 6776654 4679999986 333 2222222211 0
Q ss_pred ccccceeeEEcC--cEEEEe---CCCeEeccC---CCCC--CccCCC-CC-CCCCcCCCCCccEE-Eeeccchh--hhhc
Q 002778 131 INVGYGPMAVGP--RWLAYA---SNTLLLSNS---GRLS--PQNLTP-SG-VSPSTSPGGSSLVA-RYAMEHSK--QFAA 195 (882)
Q Consensus 131 ~~~~~g~lAlsp--R~LAys---s~~v~lwdt---G~vs--~q~lt~-~~-vs~s~SP~~GslVA-~~A~essk--~la~ 195 (882)
....++++| ++|..+ ++.+.+|+. |.+. .+.+.. +. -....+|++..+.+ .+..+... .+..
T Consensus 81 ---~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~ 157 (330)
T PRK11028 81 ---SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSD 157 (330)
T ss_pred ---CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECC
Confidence 113467776 556533 346777753 2111 111111 00 11224555544422 11111100 0000
Q ss_pred cccccccccccc--cCCCCC-CCCccCCCccccccccccccCCCceEEEEECCC--C--cEEEEeccC------CCCeEE
Q 002778 196 GLSKTLSKYCQE--LLPDGS-SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT--R--AIISQFKAH------TSPISA 262 (882)
Q Consensus 196 GliktLs~~~~~--l~pdgs-~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s--~--~~v~~f~aH------~spIsa 262 (882)
. +.+...... -.+.+. ...+.++++++.+.++ ...+++|.+||+.. + +.+..+..+ ......
T Consensus 158 ~--g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~---~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 232 (330)
T PRK11028 158 D--GHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCV---NELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAAD 232 (330)
T ss_pred C--CcccccCCCceecCCCCCCceEEECCCCCEEEEE---ecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCcccee
Confidence 0 011100000 011121 1123344555654332 24479999999973 3 234444322 112346
Q ss_pred EEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeC-CC
Q 002778 263 LCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS-KG 341 (882)
Q Consensus 263 LaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~-DG 341 (882)
++|+|+|++|+++......|.||++... +. ....+.....| .....++|+|||++|+++.. ++
T Consensus 233 i~~~pdg~~lyv~~~~~~~I~v~~i~~~------~~-------~~~~~~~~~~~---~~p~~~~~~~dg~~l~va~~~~~ 296 (330)
T PRK11028 233 IHITPDGRHLYACDRTASLISVFSVSED------GS-------VLSFEGHQPTE---TQPRGFNIDHSGKYLIAAGQKSH 296 (330)
T ss_pred EEECCCCCEEEEecCCCCeEEEEEEeCC------CC-------eEEEeEEEecc---ccCCceEECCCCCEEEEEEccCC
Confidence 9999999999998765667999999542 10 00112222222 23457899999999998875 89
Q ss_pred eEEEEECCCCCC
Q 002778 342 TCHVFVLSPFGG 353 (882)
Q Consensus 342 TVhIWdI~~~gg 353 (882)
+|.||+++...+
T Consensus 297 ~v~v~~~~~~~g 308 (330)
T PRK11028 297 HISVYEIDGETG 308 (330)
T ss_pred cEEEEEEcCCCC
Confidence 999999975443
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.3e-07 Score=107.23 Aligned_cols=95 Identities=19% Similarity=0.285 Sum_probs=74.8
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEE
Q 002778 233 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 312 (882)
Q Consensus 233 gs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~ 312 (882)
|...|.-.|.|.++...+..-.. ..+|++++|+|+|.+||.||.|+. |.||.+... | ..+.+
T Consensus 424 Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~-iyiy~Vs~~------g----------~~y~r 485 (626)
T KOG2106|consen 424 GTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNH-IYIYRVSAN------G----------RKYSR 485 (626)
T ss_pred eeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCe-EEEEEECCC------C----------cEEEE
Confidence 45678999999998554444334 899999999999999999999765 999999542 3 23223
Q ss_pred EEecccCCcEEEEEEccCCCEEEEEeCCCeEEEE
Q 002778 313 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVF 346 (882)
Q Consensus 313 L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIW 346 (882)
. +-.+.+.|+.|.||+|+++|.+-|-|-.+--|
T Consensus 486 ~-~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 486 V-GKCSGSPITHLDWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred e-eeecCceeEEeeecCCCceEEeccCceEEEEE
Confidence 2 22233789999999999999999999999999
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.5e-08 Score=105.75 Aligned_cols=99 Identities=19% Similarity=0.318 Sum_probs=84.3
Q ss_pred CCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEE
Q 002778 234 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 312 (882)
Q Consensus 234 s~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdG-tlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~ 312 (882)
+.-|.|+|.|..++++...+++|-..|+.|.|.|+- ++|++||. ++.||+|++... .++..
T Consensus 112 G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~Sk-D~svRlwnI~~~-----------------~Cv~V 173 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASK-DHSVRLWNIQTD-----------------VCVAV 173 (385)
T ss_pred cceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecC-CceEEEEeccCC-----------------eEEEE
Confidence 467999999999999999999999999999999986 68889998 677999999752 34444
Q ss_pred E--EecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 313 L--HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 313 L--~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
| ..|| ...|.+|.|++||.+||+++.|.++.+|+|+..
T Consensus 174 fGG~egH-rdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~ 213 (385)
T KOG1034|consen 174 FGGVEGH-RDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVK 213 (385)
T ss_pred ecccccc-cCcEEEEEEcCCCCeeeccCCcceEEEEecChh
Confidence 4 2343 357999999999999999999999999999843
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.8e-09 Score=114.27 Aligned_cols=232 Identities=17% Similarity=0.144 Sum_probs=131.1
Q ss_pred EEEEE-cCCcEEEEEEcCCE---EEEE-ECCeEEEEECCCCceeEEEecCCCcccCCCCcccccccceeeEEcC-cEEEE
Q 002778 74 EHVLR-FRSSVCMVRCSPRI---VAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP-RWLAY 147 (882)
Q Consensus 74 V~tLk-f~s~V~sV~~S~rl---LAV~-~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g~lAlsp-R~LAy 147 (882)
+..|. |++.|+.++=++.. +|+| .|++|+|||+.+.+++.++..|..+. ..+++.- ..+-.
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V-------------~Gi~v~~~~~~tv 125 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLV-------------RGICVTQTSFFTV 125 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCce-------------eeEEecccceEEe
Confidence 34444 78889988888743 5554 58999999999999999998776431 2233333 33333
Q ss_pred eC-CCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEee-ccchhhhhcc----ccc-ccccccccc-CCCCCCCCccC
Q 002778 148 AS-NTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYA-MEHSKQFAAG----LSK-TLSKYCQEL-LPDGSSSPVSP 219 (882)
Q Consensus 148 ss-~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A-~essk~la~G----lik-tLs~~~~~l-~pdgs~s~~S~ 219 (882)
++ .+++.|.... .|.+.-. .++.+...-. ...+.-...| +|+ ....-...+ +...+...+.+
T Consensus 126 gdDKtvK~wk~~~-~p~~til---------g~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkf 195 (433)
T KOG0268|consen 126 GDDKTVKQWKIDG-PPLHTIL---------GKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKF 195 (433)
T ss_pred cCCcceeeeeccC-Ccceeee---------ccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEec
Confidence 32 4688886311 0110000 0000000000 0000000111 120 000000000 00011123344
Q ss_pred CCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCC
Q 002778 220 NSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNH 299 (882)
Q Consensus 220 ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~ 299 (882)
|+....+ ++ ++..|+.|.|||+....+++.+.- +..-+.|+|+|.+--+++|+. ++++..||+..- .
T Consensus 196 NpvETsI-La--s~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~E-D~nlY~~DmR~l-----~--- 262 (433)
T KOG0268|consen 196 NPVETSI-LA--SCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANE-DHNLYTYDMRNL-----S--- 262 (433)
T ss_pred CCCcchh-ee--eeccCCceEEEecccCCccceeee-eccccceecCccccceeeccc-cccceehhhhhh-----c---
Confidence 4432221 22 456899999999999877655432 234467999997777777776 677999998531 0
Q ss_pred ccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 300 KYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 300 ~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
..+ ..++|+..| |.+|+|||.|+-+++||-|.||+||.++..
T Consensus 263 --------~p~-~v~~dhvsA-V~dVdfsptG~EfvsgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 263 --------RPL-NVHKDHVSA-VMDVDFSPTGQEFVSGSYDKSIRIFPVNHG 304 (433)
T ss_pred --------ccc-hhhccccee-EEEeccCCCcchhccccccceEEEeecCCC
Confidence 112 223577665 999999999999999999999999999854
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.3e-08 Score=114.87 Aligned_cols=211 Identities=16% Similarity=0.180 Sum_probs=132.8
Q ss_pred CeEEEEECCCCeEEEEEEcCC---cEEEEEEcC--CEEE-EEECCeEEEEECCCCceeEEEecCCCcccCCCCccccccc
Q 002778 61 TAVRFYSFQSHCYEHVLRFRS---SVCMVRCSP--RIVA-VGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 134 (882)
Q Consensus 61 ~tVrlWDlkTG~~V~tLkf~s---~V~sV~~S~--rlLA-V~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~ 134 (882)
.+|.||||.+-...-..+..+ .++++++++ ++.. .+.++.|.|||+.+-..++++.+|+. +
T Consensus 487 stlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtD-------------G 553 (705)
T KOG0639|consen 487 STLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD-------------G 553 (705)
T ss_pred ceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCC-------------C
Confidence 689999998766544444443 478888887 4444 45688999999999889999988876 1
Q ss_pred ceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCC
Q 002778 135 YGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS 214 (882)
Q Consensus 135 ~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~ 214 (882)
...+.+ +.+..+||..| + ++ .| +.+.+..+ +++..|- |....-+
T Consensus 554 ascIdi-------s~dGtklWTGG-l----------------Dn--tv------RcWDlreg--rqlqqhd--F~SQIfS 597 (705)
T KOG0639|consen 554 ASCIDI-------SKDGTKLWTGG-L----------------DN--TV------RCWDLREG--RQLQQHD--FSSQIFS 597 (705)
T ss_pred ceeEEe-------cCCCceeecCC-C----------------cc--ce------eehhhhhh--hhhhhhh--hhhhhee
Confidence 233333 33344455422 1 00 00 01111111 0000000 0000001
Q ss_pred CCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccC
Q 002778 215 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS 294 (882)
Q Consensus 215 s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~ 294 (882)
...+++.+|-. .|-.++.|.|-... +....++..|.+-|.+|.|.+-|+++|+.+. ++.++.|++ |.
T Consensus 598 Lg~cP~~dWla------vGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cGkwfvStGk-DnlLnawrt-Py---- 664 (705)
T KOG0639|consen 598 LGYCPTGDWLA------VGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWFVSTGK-DNLLNAWRT-PY---- 664 (705)
T ss_pred cccCCCcccee------eecccCcEEEEecC-CccceeecccccEEEEEEecccCceeeecCc-hhhhhhccC-cc----
Confidence 11234444432 23456667776653 4456778889999999999999999999998 457999998 42
Q ss_pred CCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEEC
Q 002778 295 GSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 348 (882)
Q Consensus 295 ~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI 348 (882)
| ..++... ....|.+...|-|.+||++||-|....||.+
T Consensus 665 --G----------asiFqsk---E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 665 --G----------ASIFQSK---ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred --c----------cceeecc---ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 4 2455543 2357999999999999999999998888876
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.5e-07 Score=96.54 Aligned_cols=98 Identities=20% Similarity=0.300 Sum_probs=80.7
Q ss_pred ccCCCceEEEEECCCCcEEEEecc--C-----CCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccC
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKA--H-----TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWN 304 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~a--H-----~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~s 304 (882)
+|++|.+|+.||+.-..++.++.. | .+.|.+++.+|+|++||++-.|. ...+||+.- |
T Consensus 199 sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~ds-sc~lydirg-------~------- 263 (350)
T KOG0641|consen 199 SGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADS-SCMLYDIRG-------G------- 263 (350)
T ss_pred ccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCC-ceEEEEeeC-------C-------
Confidence 467899999999998888877642 3 35799999999999999998855 478999962 2
Q ss_pred CcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECC
Q 002778 305 SSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 349 (882)
Q Consensus 305 ss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~ 349 (882)
+.++.++ -+.+.|.++.|||-..|+.++|-|..|+|=|++
T Consensus 264 ---r~iq~f~--phsadir~vrfsp~a~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 264 ---RMIQRFH--PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred ---ceeeeeC--CCccceeEEEeCCCceEEEEecccceEEEeecc
Confidence 4566654 245789999999999999999999999998885
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.7e-07 Score=94.23 Aligned_cols=99 Identities=27% Similarity=0.402 Sum_probs=76.8
Q ss_pred CCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCC-EEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEE
Q 002778 235 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 313 (882)
Q Consensus 235 ~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGt-lLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L 313 (882)
.++.+++||+..+..+..+..|...|.+++|+|+|. ++++++.++. |++||... + ..+...
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~-i~~wd~~~-------~----------~~~~~~ 237 (466)
T COG2319 176 LDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGT-IRLWDLST-------G----------KLLRST 237 (466)
T ss_pred CCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCc-EEEEECCC-------C----------cEEeee
Confidence 478999999999888999999999999999999998 6666577665 78998742 2 233312
Q ss_pred EecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCC
Q 002778 314 HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 353 (882)
Q Consensus 314 ~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg 353 (882)
..++... . -..|++++.++++++.|+++++|++.....
T Consensus 238 ~~~~~~~-~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 275 (466)
T COG2319 238 LSGHSDS-V-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS 275 (466)
T ss_pred cCCCCcc-e-eEeECCCCCEEEEecCCCcEEEeeecCCCc
Confidence 3454432 2 228999999999999999999999986654
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.6e-08 Score=107.22 Aligned_cols=167 Identities=17% Similarity=0.178 Sum_probs=115.0
Q ss_pred ccCCeEEEEECCCCeEEEEEEcCCcEEEEEEcCCEEEEEEC-CeEEEEECCCCceeEEEecCCCcccCCCCcccccccce
Q 002778 58 NSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 136 (882)
Q Consensus 58 ~sp~tVrlWDlkTG~~V~tLkf~s~V~sV~~S~rlLAV~~d-~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g 136 (882)
+.++|||+||++....+.+++.+..||+..+-..+++|+.. ..|.+|++.....++.....|.
T Consensus 134 SWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpL---------------- 197 (347)
T KOG0647|consen 134 SWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPL---------------- 197 (347)
T ss_pred ccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcc----------------
Confidence 47899999999999999999999999999988878887764 5699999977654433222222
Q ss_pred eeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCCCC
Q 002778 137 PMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP 216 (882)
Q Consensus 137 ~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~s~ 216 (882)
.+--|.||...+. .+
T Consensus 198 --k~Q~R~va~f~d~--------------------------~~------------------------------------- 212 (347)
T KOG0647|consen 198 --KWQTRCVACFQDK--------------------------DG------------------------------------- 212 (347)
T ss_pred --cceeeEEEEEecC--------------------------Cc-------------------------------------
Confidence 1111333322110 00
Q ss_pred ccCCCccccccccccccCCCceEEEEECCCC--cEEEEeccCCC---------CeEEEEECCCCCEEEEEEcCCCEEEEE
Q 002778 217 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTR--AIISQFKAHTS---------PISALCFDPSGTLLVTASVYGNNINIF 285 (882)
Q Consensus 217 ~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~--~~v~~f~aH~s---------pIsaLaFSPdGtlLATAS~dGt~IrVW 285 (882)
. + -|+..|.|-|..+..+ +.--+|++|.. +|+.|+|+|.-..|||++.||+ +..|
T Consensus 213 -------~--a----lGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGt-f~FW 278 (347)
T KOG0647|consen 213 -------F--A----LGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGT-FSFW 278 (347)
T ss_pred -------e--E----eeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCce-EEEe
Confidence 0 0 1345667777766654 33456777863 5788999999889999999886 8999
Q ss_pred ecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEe
Q 002778 286 RIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS 338 (882)
Q Consensus 286 di~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS 338 (882)
|-.. ..+|.... ..+.+|.+.+|+.+|.++|-+.
T Consensus 279 Dkda-----------------r~kLk~s~--~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 279 DKDA-----------------RTKLKTSE--THPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred cchh-----------------hhhhhccC--cCCCccceeEecCCCCEEEEEe
Confidence 9742 12333322 2456899999999999988763
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.2e-08 Score=106.15 Aligned_cols=245 Identities=17% Similarity=0.133 Sum_probs=148.9
Q ss_pred EEEEEEcCCcEEEEEEcC--CEEEEEE-CCeEEEEECCCCceeEEEecCCCcccCCCCcccccccceeeEEcC--cEEEE
Q 002778 73 YEHVLRFRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAY 147 (882)
Q Consensus 73 ~V~tLkf~s~V~sV~~S~--rlLAV~~-d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g~lAlsp--R~LAy 147 (882)
..++|++.. ..+++|++ .+||+|. +++|.|||..|...-+.+..|-.| ...+++++ |.|..
T Consensus 17 l~~tld~~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~p-------------i~sl~WS~dgr~Llt 82 (405)
T KOG1273|consen 17 LTHTLDNPL-AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRP-------------ITSLCWSRDGRKLLT 82 (405)
T ss_pred hceeccCCc-cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccc-------------eeEEEecCCCCEeee
Confidence 456677666 67788986 8999975 688999999998866666666554 35678887 77766
Q ss_pred eC--CCeEeccC--CCCCCcc--CCCCCCCCCcCCCCCccE-EEeeccchhhhhccccccccccccccCCC---CC-CCC
Q 002778 148 AS--NTLLLSNS--GRLSPQN--LTPSGVSPSTSPGGSSLV-ARYAMEHSKQFAAGLSKTLSKYCQELLPD---GS-SSP 216 (882)
Q Consensus 148 ss--~~v~lwdt--G~vs~q~--lt~~~vs~s~SP~~GslV-A~~A~essk~la~GliktLs~~~~~l~pd---gs-~s~ 216 (882)
++ ..+.+||. |.. .+. +..|.-.....|.+...+ |....+... + -.++.....++|. +. ++.
T Consensus 83 sS~D~si~lwDl~~gs~-l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~-v-----i~~s~~~h~~Lp~d~d~dln~s 155 (405)
T KOG1273|consen 83 SSRDWSIKLWDLLKGSP-LKRIRFDSPVWGAQWHPRKRNKCVATIMEESPV-V-----IDFSDPKHSVLPKDDDGDLNSS 155 (405)
T ss_pred ecCCceeEEEeccCCCc-eeEEEccCccceeeeccccCCeEEEEEecCCcE-E-----EEecCCceeeccCCCccccccc
Confidence 64 47899985 321 111 112222222233333222 111111110 0 1122111112221 11 111
Q ss_pred ---ccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCC-CCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcc
Q 002778 217 ---VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHT-SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM 292 (882)
Q Consensus 217 ---~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~-spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~ 292 (882)
..++..++++. +|...|.+.|+|+.+.++++.|+--+ ..|..|-|+..|+.|++-.. +++||+|++..--.
T Consensus 156 as~~~fdr~g~yIi----tGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts-DRvIR~ye~~di~~ 230 (405)
T KOG1273|consen 156 ASHGVFDRRGKYII----TGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS-DRVIRTYEISDIDD 230 (405)
T ss_pred cccccccCCCCEEE----EecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC-CceEEEEehhhhcc
Confidence 12555556543 56789999999999999999998766 88999999999999999887 56899999863100
Q ss_pred cCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCC-CeEEEEECCCC
Q 002778 293 RSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK-GTCHVFVLSPF 351 (882)
Q Consensus 293 ~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~D-GTVhIWdI~~~ 351 (882)
.+..| .....+++.--.....-.+++||.||.||+++|.+ ..+.||.-..+
T Consensus 231 ~~r~~--------e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G 282 (405)
T KOG1273|consen 231 EGRDG--------EVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIG 282 (405)
T ss_pred cCccC--------CcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCc
Confidence 00001 11122232211112345789999999999998865 56999987653
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=6.9e-08 Score=115.30 Aligned_cols=176 Identities=17% Similarity=0.205 Sum_probs=123.5
Q ss_pred ccCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC--CEEEEEE-CCeEEEEECCCCceeEEEecC-CCcccCCCCccccc
Q 002778 58 NSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTY-PVPQLAGQGAVGIN 132 (882)
Q Consensus 58 ~sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~--rlLAV~~-d~qI~IWDa~T~e~l~tL~t~-p~p~~~~~~~~g~~ 132 (882)
..+..|++-++.+....+.++ |..+|..|.+++ .+|||+. +++|+|||+.++.+.+++..- +.. .+.
T Consensus 115 sdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n-----~~~--- 186 (933)
T KOG1274|consen 115 SDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDN-----EFI--- 186 (933)
T ss_pred cCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccc-----ccc---
Confidence 367999999999998888887 999999999997 5888865 789999999999998888642 110 000
Q ss_pred ccceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCC
Q 002778 133 VGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG 212 (882)
Q Consensus 133 ~~~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdg 212 (882)
...++ .-+|+ +|.+|.++
T Consensus 187 -~s~i~----~~~aW---------------------------~Pk~g~la------------------------------ 204 (933)
T KOG1274|consen 187 -LSRIC----TRLAW---------------------------HPKGGTLA------------------------------ 204 (933)
T ss_pred -cccee----eeeee---------------------------cCCCCeEE------------------------------
Confidence 00000 01111 23333221
Q ss_pred CCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEecc--CCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCC
Q 002778 213 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA--HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPS 290 (882)
Q Consensus 213 s~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~a--H~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~ 290 (882)
+ ...++.|++|+..+......++. |.+.+..++|||.|++||+++.+|. |-|||+.+.
T Consensus 205 ---------------~----~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~-I~vWnv~t~ 264 (933)
T KOG1274|consen 205 ---------------V----PPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQ-ILVWNVDTH 264 (933)
T ss_pred ---------------e----eccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCc-EEEEecccc
Confidence 1 13578999999998877766653 4445999999999999999999886 889999631
Q ss_pred cccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEE
Q 002778 291 CMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVF 346 (882)
Q Consensus 291 ~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIW 346 (882)
..++++ ..|++++|-|+..-|-.-...|+.-+|
T Consensus 265 ------------------~~~~~~-----~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 265 ------------------ERHEFK-----RAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred ------------------hhcccc-----ceeEEEecCCCCCeeEEEeeccccccC
Confidence 112221 358999999998877666666655544
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.83 E-value=9.9e-08 Score=107.22 Aligned_cols=183 Identities=18% Similarity=0.251 Sum_probs=123.4
Q ss_pred cccccc-----ccCccCCCCCcccccCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC--CEEEEE-ECCeEEEEECCCC
Q 002778 39 SHLGGV-----RDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVG-LATQIYCFDALTL 109 (882)
Q Consensus 39 ~~~~~v-----~~~~~~~~~~~~~~sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~--rlLAV~-~d~qI~IWDa~T~ 109 (882)
+|.+.| +.|.++-+.. ..+++|++|++..-.++.++- |++.|.+|.... +.+.|+ -|.++++|++..-
T Consensus 242 ghr~~V~~L~fr~gt~~lys~---s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee 318 (479)
T KOG0299|consen 242 GHRGAVSSLAFRKGTSELYSA---SADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE 318 (479)
T ss_pred ccccceeeeeeecCccceeee---ecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccc
Confidence 555654 6677665533 468999999999988888874 999999998754 455565 4788999998432
Q ss_pred ceeEEEecCCCcccCCCCcccccccceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccc
Q 002778 110 ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEH 189 (882)
Q Consensus 110 e~l~tL~t~p~p~~~~~~~~g~~~~~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~es 189 (882)
.. ..+.++.. ++..+||-++.-
T Consensus 319 sq-lifrg~~~--------------------sidcv~~In~~H------------------------------------- 340 (479)
T KOG0299|consen 319 SQ-LIFRGGEG--------------------SIDCVAFINDEH------------------------------------- 340 (479)
T ss_pred ce-eeeeCCCC--------------------CeeeEEEecccc-------------------------------------
Confidence 11 11211110 011233322100
Q ss_pred hhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEec-cCC-----------
Q 002778 190 SKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK-AHT----------- 257 (882)
Q Consensus 190 sk~la~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~-aH~----------- 257 (882)
+. +|+.+|.|-+|++...+++.+.+ ||.
T Consensus 341 --------------------------------------fv--sGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~ 380 (479)
T KOG0299|consen 341 --------------------------------------FV--SGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGN 380 (479)
T ss_pred --------------------------------------ee--eccCCceEEEeeecccCceeEeeccccccCCccccccc
Confidence 00 45678999999998888776554 441
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEE
Q 002778 258 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV 337 (882)
Q Consensus 258 spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsg 337 (882)
..|++|+.-|...++||+|.+|. +|+|.+.+.. -....++.+. . ..-|++|+|+++|++|++|
T Consensus 381 ~Witsla~i~~sdL~asGS~~G~-vrLW~i~~g~-------------r~i~~l~~ls--~-~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 381 FWITSLAVIPGSDLLASGSWSGC-VRLWKIEDGL-------------RAINLLYSLS--L-VGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred cceeeeEecccCceEEecCCCCc-eEEEEecCCc-------------cccceeeecc--c-ccEEEEEEEccCCCEEEEe
Confidence 27899999999999999999885 9999997521 0123555553 1 2469999999999988888
Q ss_pred eC
Q 002778 338 SS 339 (882)
Q Consensus 338 S~ 339 (882)
--
T Consensus 444 iG 445 (479)
T KOG0299|consen 444 IG 445 (479)
T ss_pred cc
Confidence 43
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.7e-07 Score=101.70 Aligned_cols=230 Identities=16% Similarity=0.084 Sum_probs=125.7
Q ss_pred CCeEEEEECCCCeEEEEEEcCCcEEEEEEcC--CEEEEE-E---CCeEEEEECCCCceeEEEecCCCcccCCCCcccccc
Q 002778 60 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVG-L---ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 133 (882)
Q Consensus 60 p~tVrlWDlkTG~~V~tLkf~s~V~sV~~S~--rlLAV~-~---d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~ 133 (882)
...|.+||...+...........+.+.++++ +.||.. . ..+|++||+.+++.. .+...+.
T Consensus 178 ~~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-~l~~~~~------------- 243 (429)
T PRK03629 178 PYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPR------------- 243 (429)
T ss_pred ceeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-EccCCCC-------------
Confidence 3478899986554433334666789999987 566643 2 246999999887642 2322221
Q ss_pred cceeeEEcC--cEEEEeCC-----CeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhcccccccccccc
Q 002778 134 GYGPMAVGP--RWLAYASN-----TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQ 206 (882)
Q Consensus 134 ~~g~lAlsp--R~LAyss~-----~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~ 206 (882)
.....+++| +.|+|... .+.+|+...-....++. .
T Consensus 244 ~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~------------------------------------~-- 285 (429)
T PRK03629 244 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD------------------------------------G-- 285 (429)
T ss_pred CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccC------------------------------------C--
Confidence 012457777 78887632 23444421000011110 0
Q ss_pred ccCCCCCCCCccCCCccccccccccccCCCce--EEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC--CEE
Q 002778 207 ELLPDGSSSPVSPNSVWKVGRHAGADMDNAGI--VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG--NNI 282 (882)
Q Consensus 207 ~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~--V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dG--t~I 282 (882)
.........+++++.+++.. ...|. |.++|+.++.. ..+..+.......+|+|||++||.++.++ ..|
T Consensus 286 ----~~~~~~~~wSPDG~~I~f~s---~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I 357 (429)
T PRK03629 286 ----RSNNTEPTWFPDSQNLAYTS---DQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHI 357 (429)
T ss_pred ----CCCcCceEECCCCCEEEEEe---CCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceE
Confidence 00011122333445444321 22343 44457766653 34444444566789999999998876543 347
Q ss_pred EEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCe---EEEEECCCCCCcccccc
Q 002778 283 NIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGT---CHVFVLSPFGGDSGFQT 359 (882)
Q Consensus 283 rVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGT---VhIWdI~~~gg~~~l~~ 359 (882)
.+||+.. | ....+..+ ....+.+|||||++|+.++.++. +.+++++ ++....+.+
T Consensus 358 ~~~dl~~-------g-----------~~~~Lt~~---~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~ 415 (429)
T PRK03629 358 AKQDLAT-------G-----------GVQVLTDT---FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPA 415 (429)
T ss_pred EEEECCC-------C-----------CeEEeCCC---CCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECcc
Confidence 7788743 2 12233222 12356889999999999998875 4555553 334455666
Q ss_pred ccCCCCCCcccC
Q 002778 360 LSSQGGDPYLFP 371 (882)
Q Consensus 360 H~~~~~~~~~sp 371 (882)
|...+..+.++|
T Consensus 416 ~~~~~~~p~Wsp 427 (429)
T PRK03629 416 TDGQVKFPAWSP 427 (429)
T ss_pred CCCCcCCcccCC
Confidence 654444444433
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.2e-08 Score=124.01 Aligned_cols=204 Identities=16% Similarity=0.165 Sum_probs=143.8
Q ss_pred cccccccccCccCCCCCcccc---cCCeEEEEECCCCeEEEEE---EcCCcEEEEEEcC---CEEEEEEC-CeEEEEECC
Q 002778 38 RSHLGGVRDGMMDSQSGNCVN---SPTAVRFYSFQSHCYEHVL---RFRSSVCMVRCSP---RIVAVGLA-TQIYCFDAL 107 (882)
Q Consensus 38 ~~~~~~v~~~~~~~~~~~~~~---sp~tVrlWDlkTG~~V~tL---kf~s~V~sV~~S~---rlLAV~~d-~qI~IWDa~ 107 (882)
.-|.|.|++--.+...+|.+. .++.|.|||++.-+.-.++ .+.+.|..|++|+ ++||.+.. +++.|||++
T Consensus 113 ~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr 192 (1049)
T KOG0307|consen 113 SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLR 192 (1049)
T ss_pred cccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceecccc
Confidence 467788888777878787774 4589999999876655555 2678899999998 57888765 589999998
Q ss_pred CCceeEEEecCCCcccCCCCcccccccceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeec
Q 002778 108 TLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAM 187 (882)
Q Consensus 108 T~e~l~tL~t~p~p~~~~~~~~g~~~~~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~ 187 (882)
..+.+..+..++. .+.+ .-|++.++ +.+.+
T Consensus 193 ~~~pii~ls~~~~----------------~~~~--S~l~WhP~---------------------------~aTql----- 222 (1049)
T KOG0307|consen 193 KKKPIIKLSDTPG----------------RMHC--SVLAWHPD---------------------------HATQL----- 222 (1049)
T ss_pred CCCcccccccCCC----------------ccce--eeeeeCCC---------------------------Cceee-----
Confidence 7665544432221 0111 11333221 00000
Q ss_pred cchhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCC-cEEEEeccCCCCeEEEEEC
Q 002778 188 EHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFD 266 (882)
Q Consensus 188 essk~la~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~-~~v~~f~aH~spIsaLaFS 266 (882)
+ ++ +.-+..-.|++||++.- ..++++++|...|.+|.|.
T Consensus 223 ------~---------------------------------~A-s~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc 262 (1049)
T KOG0307|consen 223 ------L---------------------------------VA-SGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWC 262 (1049)
T ss_pred ------e---------------------------------ee-cCCCCCceeEeecccccCCchhhhcccccceeeeccC
Confidence 0 00 01133457999998753 4678889999999999999
Q ss_pred CCC-CEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCC-EEEEEeCCCeEE
Q 002778 267 PSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ-WIAIVSSKGTCH 344 (882)
Q Consensus 267 PdG-tlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~-~LAsgS~DGTVh 344 (882)
+.+ ++|+|++.|++ |.+|+..+ | ..++++-+ ....+.++.|+|-.- .+|++|.||+|-
T Consensus 263 ~~D~~lllSsgkD~~-ii~wN~~t-------g----------Evl~~~p~--~~nW~fdv~w~pr~P~~~A~asfdgkI~ 322 (1049)
T KOG0307|consen 263 PQDPRLLLSSGKDNR-IICWNPNT-------G----------EVLGELPA--QGNWCFDVQWCPRNPSVMAAASFDGKIS 322 (1049)
T ss_pred CCCchhhhcccCCCC-eeEecCCC-------c----------eEeeecCC--CCcceeeeeecCCCcchhhhheecccee
Confidence 988 88899998776 77999865 3 47788754 235799999999765 889999999999
Q ss_pred EEECCCC
Q 002778 345 VFVLSPF 351 (882)
Q Consensus 345 IWdI~~~ 351 (882)
||.+...
T Consensus 323 I~sl~~~ 329 (1049)
T KOG0307|consen 323 IYSLQGT 329 (1049)
T ss_pred eeeeecC
Confidence 9999754
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.8e-08 Score=108.89 Aligned_cols=137 Identities=19% Similarity=0.220 Sum_probs=88.6
Q ss_pred CCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCC
Q 002778 219 PNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGN 298 (882)
Q Consensus 219 ~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~ 298 (882)
|+..+..++ .|..+|.|.|||+.+..+-..|.||..||.+|+||+||++|+|+|.| ..|.+||+.......--.-
T Consensus 31 Fs~~G~~lA----vGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D-~si~lwDl~~gs~l~rirf 105 (405)
T KOG1273|consen 31 FSRWGDYLA----VGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRD-WSIKLWDLLKGSPLKRIRF 105 (405)
T ss_pred eccCcceee----eeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCC-ceeEEEeccCCCceeEEEc
Confidence 344444444 46889999999999999889999999999999999999999999994 5699999964200000000
Q ss_pred CccccCCc----c--cEE----------EEEEeccc-----------CCcEEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 299 HKYDWNSS----H--VHL----------YKLHRGIT-----------SATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 299 ~~~d~sss----~--~~l----------~~L~RG~t-----------~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
.+.-|... . ..+ -.+.-+.+ +..-....|.+-|++|.+|..+|.++|++.++.
T Consensus 106 ~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~ 185 (405)
T KOG1273|consen 106 DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETL 185 (405)
T ss_pred cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchh
Confidence 00111110 0 000 00100000 000112247778999999999999999999988
Q ss_pred CCccccccc
Q 002778 352 GGDSGFQTL 360 (882)
Q Consensus 352 gg~~~l~~H 360 (882)
.+...++--
T Consensus 186 e~vas~rit 194 (405)
T KOG1273|consen 186 ECVASFRIT 194 (405)
T ss_pred eeeeeeeec
Confidence 777665543
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.9e-07 Score=99.63 Aligned_cols=107 Identities=15% Similarity=0.277 Sum_probs=76.0
Q ss_pred CceEEEEECCCC----cEEEEeccCCCCeEEEEECCC-C---CEEEEEEcCCCEEEEEecCCCccc-----CCCCCCccc
Q 002778 236 AGIVVVKDFVTR----AIISQFKAHTSPISALCFDPS-G---TLLVTASVYGNNINIFRIMPSCMR-----SGSGNHKYD 302 (882)
Q Consensus 236 dG~V~VWDl~s~----~~v~~f~aH~spIsaLaFSPd-G---tlLATAS~dGt~IrVWdi~p~~~~-----~~sG~~~~d 302 (882)
-+.+.||..... ..+..+..|++||..|+|.|+ | .+||+|+.|| |+||.+...++. ...+....+
T Consensus 198 ~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg--v~I~~v~~~~s~i~~ee~~~~~~~~~ 275 (361)
T KOG2445|consen 198 LNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG--VRIFKVKVARSAIEEEEVLAPDLMTD 275 (361)
T ss_pred ccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc--EEEEEEeeccchhhhhcccCCCCccc
Confidence 457888876543 256788899999999999996 3 4899999987 899999742110 000000001
Q ss_pred cCCcccEEEEEE-ecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECC
Q 002778 303 WNSSHVHLYKLH-RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 349 (882)
Q Consensus 303 ~sss~~~l~~L~-RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~ 349 (882)
-.+.++. -+.+++.|+.+.|.--|..|+++++||+||+|..+
T Consensus 276 -----l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 276 -----LPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred -----cceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 1122221 24566799999999999999999999999999864
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.5e-08 Score=107.03 Aligned_cols=99 Identities=15% Similarity=0.236 Sum_probs=78.5
Q ss_pred CceEEEEECCCCcEEEEec-cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEE
Q 002778 236 AGIVVVKDFVTRAIISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 314 (882)
Q Consensus 236 dG~V~VWDl~s~~~v~~f~-aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~ 314 (882)
+-.+.+||+.+|.....+. +|...+.+.+|.|||..+++||.|++ |.-||+. |. .++..
T Consensus 290 ~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~-i~~wdlD--------gn----------~~~~W- 349 (519)
T KOG0293|consen 290 DEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRT-IIMWDLD--------GN----------ILGNW- 349 (519)
T ss_pred hHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCc-EEEecCC--------cc----------hhhcc-
Confidence 4458999999998776664 35678999999999999999999876 7899984 31 22221
Q ss_pred ecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCc
Q 002778 315 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD 354 (882)
Q Consensus 315 RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~ 354 (882)
+|.....|++|+.++||+++.+...|..|++|+.++.-..
T Consensus 350 ~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr 389 (519)
T KOG0293|consen 350 EGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDR 389 (519)
T ss_pred cccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhh
Confidence 3444457999999999999999999999999999876544
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.78 E-value=3e-07 Score=99.54 Aligned_cols=97 Identities=16% Similarity=0.264 Sum_probs=77.8
Q ss_pred cCCCceEEEEECCC-CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEE
Q 002778 233 MDNAGIVVVKDFVT-RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 233 gs~dG~V~VWDl~s-~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~ 311 (882)
.+.|-+.++||+.. -..+..|++|++.|+++.|+-+. .++++|. +.+|+|||+..- . ..+.
T Consensus 332 sSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSD-DrTvKvWdLrNM------R----------splA 393 (481)
T KOG0300|consen 332 SSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSD-DRTVKVWDLRNM------R----------SPLA 393 (481)
T ss_pred eccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCC-CceEEEeeeccc------c----------Ccce
Confidence 45688999999973 35688999999999999999876 4778887 456999999642 1 2456
Q ss_pred EEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 002778 312 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 350 (882)
Q Consensus 312 ~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~ 350 (882)
+++ +...+.-|+.|.-+..||.--+..-|+|||++-
T Consensus 394 TIR---tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG 429 (481)
T KOG0300|consen 394 TIR---TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNG 429 (481)
T ss_pred eee---cCCccceeEeecCCceEEeccCCceEEEEecCC
Confidence 664 345789999999889999999999999999973
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.6e-07 Score=105.21 Aligned_cols=100 Identities=14% Similarity=0.233 Sum_probs=72.9
Q ss_pred ccCCCceEEEEECCCCcEE-EEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEE
Q 002778 232 DMDNAGIVVVKDFVTRAII-SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 310 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v-~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l 310 (882)
+|+.||+|+|.|.+..... ..++ -.+.|-.++|+|.....+-++.++.+++-||++.. | ..+
T Consensus 304 sGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~------~----------~~v 366 (463)
T KOG0270|consen 304 SGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNP------G----------KPV 366 (463)
T ss_pred eccccceEEeeeccCccccCceEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCC------C----------Cce
Confidence 4578999999999842211 1222 24678899999988766666655556999999642 2 467
Q ss_pred EEEEecccCCcEEEEEEccCC-CEEEEEeCCCeEEEEECCC
Q 002778 311 YKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSP 350 (882)
Q Consensus 311 ~~L~RG~t~a~I~sLaFSPDg-~~LAsgS~DGTVhIWdI~~ 350 (882)
+.+.- +...|.+|+++..- ..|+++|.|++|+||++..
T Consensus 367 wt~~A--Hd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~ 405 (463)
T KOG0270|consen 367 WTLKA--HDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDV 405 (463)
T ss_pred eEEEe--ccCCcceEEecCCCCcceeeccccceEEEEeecC
Confidence 77752 45689999999765 4688899999999999964
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.7e-08 Score=102.32 Aligned_cols=117 Identities=19% Similarity=0.361 Sum_probs=90.0
Q ss_pred ccCCCceEEEEECCCC---cEEEEeccCCCCeEEEEECC--CCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCc
Q 002778 232 DMDNAGIVVVKDFVTR---AIISQFKAHTSPISALCFDP--SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS 306 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~---~~v~~f~aH~spIsaLaFSP--dGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss 306 (882)
+++.|++|+|+...+. +.+.+|++|.+||.-++|-. -|++||++|.||+ +.||+-.. | .|+.
T Consensus 28 TcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgk-VIiWke~~-------g----~w~k- 94 (299)
T KOG1332|consen 28 TCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGK-VIIWKEEN-------G----RWTK- 94 (299)
T ss_pred eecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCce-EEEEecCC-------C----chhh-
Confidence 5678999999999764 46889999999999999977 8999999999887 56999742 2 3432
Q ss_pred ccEEEEEEecccCCcEEEEEEccC--CCEEEEEeCCCeEEEEECCCCCCccc---cccccCCCCC
Q 002778 307 HVHLYKLHRGITSATIQDICFSHY--SQWIAIVSSKGTCHVFVLSPFGGDSG---FQTLSSQGGD 366 (882)
Q Consensus 307 ~~~l~~L~RG~t~a~I~sLaFSPD--g~~LAsgS~DGTVhIWdI~~~gg~~~---l~~H~~~~~~ 366 (882)
.++ +..+.+.|++|+|.|. |-.||++|+||+|.|++....|+-.+ ...|...+..
T Consensus 95 ---~~e--~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~Gvns 154 (299)
T KOG1332|consen 95 ---AYE--HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNS 154 (299)
T ss_pred ---hhh--hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccce
Confidence 233 2234578999999986 57899999999999999987754432 3566544433
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.2e-07 Score=109.48 Aligned_cols=98 Identities=14% Similarity=0.254 Sum_probs=73.4
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEE
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~ 311 (882)
+++.|-+|+|||+.+++....|.+|++.|..+||||+|+++||-..||+ ||||+-.... ..+|
T Consensus 695 ~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~-~rVy~Prs~e----------------~pv~ 757 (1012)
T KOG1445|consen 695 VASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGT-LRVYEPRSRE----------------QPVY 757 (1012)
T ss_pred hhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCce-EEEeCCCCCC----------------Cccc
Confidence 3567899999999999999999999999999999999999999999886 8999864310 2333
Q ss_pred EEE--ecccCCcEEEEEEccCCCEEEEEeCCC----eEEEEECC
Q 002778 312 KLH--RGITSATIQDICFSHYSQWIAIVSSKG----TCHVFVLS 349 (882)
Q Consensus 312 ~L~--RG~t~a~I~sLaFSPDg~~LAsgS~DG----TVhIWdI~ 349 (882)
+-. -|...| -|.|--||++|++.+.|. -|.+|+.+
T Consensus 758 Eg~gpvgtRgA---Ri~wacdgr~viv~Gfdk~SeRQv~~Y~Aq 798 (1012)
T KOG1445|consen 758 EGKGPVGTRGA---RILWACDGRIVIVVGFDKSSERQVQMYDAQ 798 (1012)
T ss_pred cCCCCccCcce---eEEEEecCcEEEEecccccchhhhhhhhhh
Confidence 321 121122 366888999999888764 34555544
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.1e-07 Score=103.12 Aligned_cols=107 Identities=12% Similarity=0.122 Sum_probs=80.9
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEE
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~ 311 (882)
+++.|.+|.|||+.+++.+.++. |.+-|.++.|+.||.+|+|++.| ..|||||... | ..+.
T Consensus 149 sag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckD-KkvRv~dpr~-------~----------~~v~ 209 (472)
T KOG0303|consen 149 SAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKD-KKVRVIDPRR-------G----------TVVS 209 (472)
T ss_pred hccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeeccc-ceeEEEcCCC-------C----------cEee
Confidence 34668899999999999998888 99999999999999999999985 5699999864 3 2444
Q ss_pred EEEecccCCcEEEEEEccCCCEEEEEe---CCCeEEEEECCCCCCccccc
Q 002778 312 KLHRGITSATIQDICFSHYSQWIAIVS---SKGTCHVFVLSPFGGDSGFQ 358 (882)
Q Consensus 312 ~L~RG~t~a~I~sLaFSPDg~~LAsgS---~DGTVhIWdI~~~gg~~~l~ 358 (882)
+. .+|..+.-.-+-|=.+|..+.+|- ++..+-|||-.....+..+.
T Consensus 210 e~-~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~ 258 (472)
T KOG0303|consen 210 EG-VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQ 258 (472)
T ss_pred ec-ccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeE
Confidence 43 355555556677888999555553 35578899876655554443
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.6e-07 Score=102.75 Aligned_cols=101 Identities=23% Similarity=0.277 Sum_probs=78.2
Q ss_pred cCCCceEEEEECCCCcE-EEEeccCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEE
Q 002778 233 MDNAGIVVVKDFVTRAI-ISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 310 (882)
Q Consensus 233 gs~dG~V~VWDl~s~~~-v~~f~aH~spIsaLaFSPdG-tlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l 310 (882)
++.=|...+||+.++.. ...++-|...|..|+|+|-- .+|||||.|++ .+|||+..- .+. .+ -.+
T Consensus 297 ~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T-~kIWD~R~l-----~~K------~s-p~l 363 (498)
T KOG4328|consen 297 GDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQT-AKIWDLRQL-----RGK------AS-PFL 363 (498)
T ss_pred eecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcc-eeeeehhhh-----cCC------CC-cce
Confidence 34557899999988754 77888899999999999965 58899999776 899999631 010 00 124
Q ss_pred EEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECC
Q 002778 311 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 349 (882)
Q Consensus 311 ~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~ 349 (882)
+.+. +.-.|.+..|||++-.|++.+.|.+|+|||..
T Consensus 364 st~~---HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 364 STLP---HRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred eccc---ccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 4432 23469999999999889999999999999985
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.7e-07 Score=106.96 Aligned_cols=262 Identities=13% Similarity=0.083 Sum_probs=139.2
Q ss_pred cCCeEEEEECCCCeEE---EEEE----cCCcEEEEEEcC---CEEEEEECCeEEEEECCCCceeEE--EecCCCcccCCC
Q 002778 59 SPTAVRFYSFQSHCYE---HVLR----FRSSVCMVRCSP---RIVAVGLATQIYCFDALTLENKFS--VLTYPVPQLAGQ 126 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V---~tLk----f~s~V~sV~~S~---rlLAV~~d~qI~IWDa~T~e~l~t--L~t~p~p~~~~~ 126 (882)
.++.|.++|.+...-- +.|+ |.++|.++.+-+ ++|..+.|.+|++||+.+.++... +.+|...
T Consensus 72 E~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~S----- 146 (720)
T KOG0321|consen 72 EDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGS----- 146 (720)
T ss_pred CCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccc-----
Confidence 5688999998654322 1222 778999999876 344445678899999998876554 4455431
Q ss_pred CcccccccceeeEEcC---cEEEEe--CCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhcccc---
Q 002778 127 GAVGINVGYGPMAVGP---RWLAYA--SNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLS--- 198 (882)
Q Consensus 127 ~~~g~~~~~g~lAlsp---R~LAys--s~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~Gli--- 198 (882)
...++|.| ..++.. +..++||+.-.-....+.--...+... -++ +....+.++.++.
T Consensus 147 --------vkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~-~n~------~ptpskp~~kr~~k~k 211 (720)
T KOG0321|consen 147 --------VKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGR-HNT------APTPSKPLKKRIRKWK 211 (720)
T ss_pred --------cchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhcc-ccC------CCCCCchhhccccccc
Confidence 23455554 334443 346899984110000000000000000 000 0001112222211
Q ss_pred ---ccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEE--------EEeccC---CCCeEEEE
Q 002778 199 ---KTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII--------SQFKAH---TSPISALC 264 (882)
Q Consensus 199 ---ktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v--------~~f~aH---~spIsaLa 264 (882)
.++..+..-+ .-.+...++. .+..||.|+|||+...... ..+.-| .-.+.+|.
T Consensus 212 A~s~ti~ssvTvv----------~fkDe~tlaS---aga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~ 278 (720)
T KOG0321|consen 212 AASNTIFSSVTVV----------LFKDESTLAS---AGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLI 278 (720)
T ss_pred cccCceeeeeEEE----------EEeccceeee---ccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEE
Confidence 1111111000 0011122222 2346999999999865322 122233 23588999
Q ss_pred ECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCC--cEEEEEEccCCCEEEEEeCCCe
Q 002778 265 FDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA--TIQDICFSHYSQWIAIVSSKGT 342 (882)
Q Consensus 265 FSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a--~I~sLaFSPDg~~LAsgS~DGT 342 (882)
.+..|++|.....|++ |..|++... + . ..+..+ -|.-+. .|. =..|||+++|++|+.|+.
T Consensus 279 lDssGt~L~AsCtD~s-Iy~ynm~s~------s-------~--sP~~~~-sg~~~~sf~vk-s~lSpd~~~l~SgSsd~~ 340 (720)
T KOG0321|consen 279 LDSSGTYLFASCTDNS-IYFYNMRSL------S-------I--SPVAEF-SGKLNSSFYVK-SELSPDDCSLLSGSSDEQ 340 (720)
T ss_pred ecCCCCeEEEEecCCc-EEEEecccc------C-------c--Cchhhc-cCcccceeeee-eecCCCCceEeccCCCcc
Confidence 9999987755444564 899998532 1 0 011111 111111 122 247899999999999999
Q ss_pred EEEEECCCCCCccc-cccccCCCCCCcccC
Q 002778 343 CHVFVLSPFGGDSG-FQTLSSQGGDPYLFP 371 (882)
Q Consensus 343 VhIWdI~~~gg~~~-l~~H~~~~~~~~~sp 371 (882)
+.||.++....... +.+|+..|....+.|
T Consensus 341 ayiw~vs~~e~~~~~l~Ght~eVt~V~w~p 370 (720)
T KOG0321|consen 341 AYIWVVSSPEAPPALLLGHTREVTTVRWLP 370 (720)
T ss_pred eeeeeecCccCChhhhhCcceEEEEEeecc
Confidence 99999988766654 578876655544443
|
|
| >KOG2109 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=8.6e-08 Score=111.51 Aligned_cols=106 Identities=36% Similarity=0.638 Sum_probs=93.4
Q ss_pred cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEE
Q 002778 248 AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF 327 (882)
Q Consensus 248 ~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaF 327 (882)
.+++.+.+|..++..+.|+|+++++.||+..++.+++|.++|....+. -....|+|++.||.|.++|..++|
T Consensus 483 ~vvqh~vahs~~gv~~Ef~~~~~l~lSad~~e~ef~~f~V~Ph~~wss--------laav~hly~l~rG~TsaKv~~~af 554 (788)
T KOG2109|consen 483 GVVQHYVAHSDPGVYIEFSPDQRLVLSADANENEFNIFLVMPHATWSS--------LAAVQHLYKLNRGSTSAKVVSTAF 554 (788)
T ss_pred ceeEEEeeccCccceeeecccccceecccccccccceEEeecccccHH--------HhhhhhhhhccCCCccceeeeeEe
Confidence 567788899999999999999999999999898889999998632111 123468999999999999999999
Q ss_pred ccCCCEEEEEeCCCeEEEEECCCCCCcccccccc
Q 002778 328 SHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 361 (882)
Q Consensus 328 SPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~H~ 361 (882)
+-|++|+|.....+|-|||.+.+|++....+.|.
T Consensus 555 s~dsrw~A~~t~~~TthVfk~hpYgg~aeqrth~ 588 (788)
T KOG2109|consen 555 SEDSRWLAITTNHATTHVFKVHPYGGKAEQRTHG 588 (788)
T ss_pred ecchhhhhhhhcCCceeeeeeccccccccceecC
Confidence 9999999999999999999999999999999886
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.67 E-value=2e-07 Score=96.13 Aligned_cols=94 Identities=15% Similarity=0.283 Sum_probs=72.1
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC--CEEEEEecCCCcccCCCCCCccccCCcccE
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG--NNINIFRIMPSCMRSGSGNHKYDWNSSHVH 309 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dG--t~IrVWdi~p~~~~~~sG~~~~d~sss~~~ 309 (882)
.+..++.|.|||+. ++.+..|. ..++..|.|||+|++||+|+.++ ..|.+||+.. . ..
T Consensus 78 ~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~-------~----------~~ 137 (194)
T PF08662_consen 78 YGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK-------K----------KK 137 (194)
T ss_pred EccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-------C----------EE
Confidence 34567799999997 56666664 56889999999999999998632 2489999963 1 34
Q ss_pred EEEEEecccCCcEEEEEEccCCCEEEEEeC------CCeEEEEECC
Q 002778 310 LYKLHRGITSATIQDICFSHYSQWIAIVSS------KGTCHVFVLS 349 (882)
Q Consensus 310 l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~------DGTVhIWdI~ 349 (882)
+.+.. + ..+..++|||||++|++++. |+.++||+..
T Consensus 138 i~~~~---~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 138 ISTFE---H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred eeccc---c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 44442 2 24789999999999999874 7889999985
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.6e-06 Score=92.25 Aligned_cols=206 Identities=17% Similarity=0.270 Sum_probs=128.8
Q ss_pred ccCCeEEEEECCCCeEEEEEE----cCCcEEEEEEcCC--EEEEEE---CCeEEEEECCCCceeEEEecCCCcccCCCCc
Q 002778 58 NSPTAVRFYSFQSHCYEHVLR----FRSSVCMVRCSPR--IVAVGL---ATQIYCFDALTLENKFSVLTYPVPQLAGQGA 128 (882)
Q Consensus 58 ~sp~tVrlWDlkTG~~V~tLk----f~s~V~sV~~S~r--lLAV~~---d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~ 128 (882)
-....|.|||+++-+.++++. .+..+.++.++.. +||.=. .+.|+|||+.+.+..-++..|..+
T Consensus 103 ~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~------- 175 (391)
T KOG2110|consen 103 CLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGP------- 175 (391)
T ss_pred EEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCc-------
Confidence 344669999999999999997 2344677777664 777632 357999999999988888777552
Q ss_pred ccccccceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhcccccccccccccc
Q 002778 129 VGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQEL 208 (882)
Q Consensus 129 ~g~~~~~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l 208 (882)
+|. |||..++ .++|
T Consensus 176 ---------lAa----lafs~~G----------------------------~llA------------------------- 189 (391)
T KOG2110|consen 176 ---------LAA----LAFSPDG----------------------------TLLA------------------------- 189 (391)
T ss_pred ---------eeE----EEECCCC----------------------------CEEE-------------------------
Confidence 221 4443321 1111
Q ss_pred CCCCCCCCccCCCccccccccccccCCCc-eEEEEECCCCcEEEEeccCCC--CeEEEEECCCCCEEEEEEcCCCEEEEE
Q 002778 209 LPDGSSSPVSPNSVWKVGRHAGADMDNAG-IVVVKDFVTRAIISQFKAHTS--PISALCFDPSGTLLVTASVYGNNINIF 285 (882)
Q Consensus 209 ~pdgs~s~~S~ss~~k~~~la~~tgs~dG-~V~VWDl~s~~~v~~f~aH~s--pIsaLaFSPdGtlLATAS~dGt~IrVW 285 (882)
+++..| .|||+.+.+|+.+.+|+.-.. .|.+|+|+||+++|+..|..++ |+||
T Consensus 190 -----------------------TASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeT-VHiF 245 (391)
T KOG2110|consen 190 -----------------------TASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTET-VHIF 245 (391)
T ss_pred -----------------------EeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCe-EEEE
Confidence 233444 468999999999999986554 4789999999999998888675 9999
Q ss_pred ecCCCcc-cCCCCCCccccCC------------cccEEEEEEeccc------CCcEEEEEEc--cCCCEEEEEeCCCeEE
Q 002778 286 RIMPSCM-RSGSGNHKYDWNS------------SHVHLYKLHRGIT------SATIQDICFS--HYSQWIAIVSSKGTCH 344 (882)
Q Consensus 286 di~p~~~-~~~sG~~~~d~ss------------s~~~l~~L~RG~t------~a~I~sLaFS--PDg~~LAsgS~DGTVh 344 (882)
.+..... +..+.+....|.. ....+....|-+. ...=..++|+ ++...+.+++.||.+.
T Consensus 246 KL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y 325 (391)
T KOG2110|consen 246 KLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLY 325 (391)
T ss_pred EecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEE
Confidence 9864321 0000000001100 0001111111111 1111233455 4778999999999999
Q ss_pred EEECCCC-CCcc-ccccc
Q 002778 345 VFVLSPF-GGDS-GFQTL 360 (882)
Q Consensus 345 IWdI~~~-gg~~-~l~~H 360 (882)
.|.+.+. ||+- .+..|
T Consensus 326 ~y~l~~~~gGec~lik~h 343 (391)
T KOG2110|consen 326 SYRLPPKEGGECALIKRH 343 (391)
T ss_pred EEEcCCCCCceeEEEEee
Confidence 9999874 4443 33445
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.4e-06 Score=90.04 Aligned_cols=52 Identities=23% Similarity=0.333 Sum_probs=42.5
Q ss_pred CCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC-----CCEEEEEecC
Q 002778 235 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY-----GNNINIFRIM 288 (882)
Q Consensus 235 ~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~d-----Gt~IrVWdi~ 288 (882)
..|.|.+||+.+.+.+.++... .+..++|||||++|||+... ++.++||+..
T Consensus 123 ~~G~l~~wd~~~~~~i~~~~~~--~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 123 LNGDLEFWDVRKKKKISTFEHS--DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred CCcEEEEEECCCCEEeeccccC--cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 4588999999998888777533 47899999999999999763 4568999984
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.8e-08 Score=105.42 Aligned_cols=116 Identities=14% Similarity=0.261 Sum_probs=90.3
Q ss_pred CCCccccccccccccCCCceEEEEECCC-----------------C-cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC
Q 002778 219 PNSVWKVGRHAGADMDNAGIVVVKDFVT-----------------R-AIISQFKAHTSPISALCFDPSGTLLVTASVYGN 280 (882)
Q Consensus 219 ~ss~~k~~~la~~tgs~dG~V~VWDl~s-----------------~-~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt 280 (882)
+++++...+ +|+.|..|+|.|+.- + -++.+|--|.++|+.|.|+|..+.|+++|.|++
T Consensus 120 fs~DG~lvA----TGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~t 195 (430)
T KOG0640|consen 120 FSPDGSLVA----TGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNT 195 (430)
T ss_pred eCCCCcEEE----ccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCe
Confidence 445555543 788999999999961 1 367889999999999999999999999999765
Q ss_pred EEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccc
Q 002778 281 NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSG 356 (882)
Q Consensus 281 ~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~ 356 (882)
|++||.... +.++-++... ....|.+|+|.|.|.+|++|.+..|+||||++++.+.+.
T Consensus 196 -vKlFDfsK~---------------saKrA~K~~q--d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvs 253 (430)
T KOG0640|consen 196 -VKLFDFSKT---------------SAKRAFKVFQ--DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVS 253 (430)
T ss_pred -EEEEecccH---------------HHHHHHHHhh--ccceeeeEeecCCCceEEEecCCCceeEEeccceeEeee
Confidence 999999531 1112222111 123699999999999999999999999999999987664
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=98.61 E-value=7.1e-07 Score=95.99 Aligned_cols=99 Identities=19% Similarity=0.223 Sum_probs=78.9
Q ss_pred CCCceEEEEECCCCcEEEEe-ccCCCCeEEEEECCCCC-EEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEE
Q 002778 234 DNAGIVVVKDFVTRAIISQF-KAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 234 s~dG~V~VWDl~s~~~v~~f-~aH~spIsaLaFSPdGt-lLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~ 311 (882)
-.+++++.||+.+.+....+ .||...|..|.|+|+-+ +|||++.||. |||||+... ...+.
T Consensus 190 t~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgy-vriWD~R~t----------------k~pv~ 252 (370)
T KOG1007|consen 190 TSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGY-VRIWDTRKT----------------KFPVQ 252 (370)
T ss_pred eCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCcc-EEEEeccCC----------------Ccccc
Confidence 45899999999998766555 58999999999999875 7899998876 999999641 12456
Q ss_pred EEEecccCCcEEEEEEccC-CCEEEEEeCCCeEEEEECCCC
Q 002778 312 KLHRGITSATIQDICFSHY-SQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 312 ~L~RG~t~a~I~sLaFSPD-g~~LAsgS~DGTVhIWdI~~~ 351 (882)
+|. ++. ..|++|.|.|- .+.|.++++|..|.||....-
T Consensus 253 el~-~Hs-HWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~sv 291 (370)
T KOG1007|consen 253 ELP-GHS-HWVWAVRFNPEHDQLILSGGSDSAVNLSCASSV 291 (370)
T ss_pred ccC-CCc-eEEEEEEecCccceEEEecCCCceeEEEecccc
Confidence 654 443 47999999985 588899999999999987544
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.2e-06 Score=104.70 Aligned_cols=236 Identities=16% Similarity=0.090 Sum_probs=133.3
Q ss_pred cCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcCC-----EE-EEEECCeEEEEECCCCceeEEEecCCCcccCCCCcccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSPR-----IV-AVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGI 131 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~r-----lL-AV~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~ 131 (882)
..++|+||...||++++.|. +...+..+.+.++ .+ +..+++.|++||-..+++++++..+-.+
T Consensus 35 ~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v---------- 104 (792)
T KOG1963|consen 35 TGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPV---------- 104 (792)
T ss_pred eCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCce----------
Confidence 45899999999999999998 6778888888752 22 3457899999999999999888642110
Q ss_pred cccceeeEEcCcEEEEeCCCe--EeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccC
Q 002778 132 NVGYGPMAVGPRWLAYASNTL--LLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELL 209 (882)
Q Consensus 132 ~~~~g~lAlspR~LAyss~~v--~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~ 209 (882)
..+.+. +|++...+ .+|-- .+..+. ....+..++.....+.+......++.
T Consensus 105 ----~~~~~~---~~~a~~s~~~~~s~~---~~~~~~-----------------~~s~~~~~q~~~~~~~t~~~~~~d~~ 157 (792)
T KOG1963|consen 105 ----HALVYK---PAQADISANVYVSVE---DYSILT-----------------TFSKKLSKQSSRFVLATFDSAKGDFL 157 (792)
T ss_pred ----eEEEec---hhHhCccceeEeecc---cceeee-----------------ecccccccceeeeEeeeccccchhhh
Confidence 111111 11111110 01100 000000 00001111111111101111111111
Q ss_pred CCC-CCCCccCCCccccccccccccCCCceEEEEECCCCcEE-E---EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEE
Q 002778 210 PDG-SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII-S---QFKAHTSPISALCFDPSGTLLVTASVYGNNINI 284 (882)
Q Consensus 210 pdg-s~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v-~---~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrV 284 (882)
... ...++..++.+..-.+ -.+..+.+|+...+... . .-.-|+.++.+.+|||.|+++|+|..+|+ |.|
T Consensus 158 ~~~~~~~~I~~~~~ge~~~i-----~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGr-I~v 231 (792)
T KOG1963|consen 158 KEHQEPKSIVDNNSGEFKGI-----VHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGR-ILV 231 (792)
T ss_pred hhhcCCccEEEcCCceEEEE-----EEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCc-EEE
Confidence 000 0112222222221111 13456778888775411 1 11358888999999999999999999997 899
Q ss_pred EecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCC
Q 002778 285 FRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 352 (882)
Q Consensus 285 Wdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~g 352 (882)
|+---. .+ -+ .....|++. .+.|.+++||+||.+|.+|+..|-.-+|.+.+.+
T Consensus 232 w~d~~~-----~~-----~~---~t~t~lHWH--~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~ 284 (792)
T KOG1963|consen 232 WRDFGS-----SD-----DS---ETCTLLHWH--HDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK 284 (792)
T ss_pred Eecccc-----cc-----cc---ccceEEEec--ccccceeEEecCCceEeecccceEEEEEeecCCC
Confidence 985210 01 01 112234443 3579999999999999999999999999998865
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.9e-08 Score=111.83 Aligned_cols=99 Identities=22% Similarity=0.283 Sum_probs=79.9
Q ss_pred ccCCCceEEEEECCCC-------cEEEEeccCCCCeEEEEECCC-CCEEEEEEcCCCEEEEEecCCCcccCCCCCCcccc
Q 002778 232 DMDNAGIVVVKDFVTR-------AIISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW 303 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~-------~~v~~f~aH~spIsaLaFSPd-GtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~ 303 (882)
.+..||.|+||.+..+ ..-..+.+|...|.+|.|+|= ..+||+|+.|- +|+|||+.. +
T Consensus 645 Va~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~-Ti~lWDl~~-------~------ 710 (1012)
T KOG1445|consen 645 VATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDS-TIELWDLAN-------A------ 710 (1012)
T ss_pred ecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccc-eeeeeehhh-------h------
Confidence 4678999999999764 345778899999999999994 46899999865 599999964 2
Q ss_pred CCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 002778 304 NSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 350 (882)
Q Consensus 304 sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~ 350 (882)
....+| -||+. .|.++||||||+.+|+.+.||+++||.-..
T Consensus 711 ----~~~~~l-~gHtd-qIf~~AWSpdGr~~AtVcKDg~~rVy~Prs 751 (1012)
T KOG1445|consen 711 ----KLYSRL-VGHTD-QIFGIAWSPDGRRIATVCKDGTLRVYEPRS 751 (1012)
T ss_pred ----hhhhee-ccCcC-ceeEEEECCCCcceeeeecCceEEEeCCCC
Confidence 122233 47664 699999999999999999999999997543
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.59 E-value=9.1e-07 Score=95.27 Aligned_cols=180 Identities=17% Similarity=0.278 Sum_probs=116.1
Q ss_pred cCCeEEEEECCCCeE--EEE--EEcCCcEEEEEEcC---CEEEE-EECCeEEEEECCCCceeEEEecCCCcccCCCCccc
Q 002778 59 SPTAVRFYSFQSHCY--EHV--LRFRSSVCMVRCSP---RIVAV-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVG 130 (882)
Q Consensus 59 sp~tVrlWDlkTG~~--V~t--Lkf~s~V~sV~~S~---rlLAV-~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g 130 (882)
-++|..|||+.+|.. |+| +-|+..|++|+|.+ +++|+ |.|+.+++||++.++--..+...|.|.
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~-------- 242 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPS-------- 242 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCC--------
Confidence 579999999999843 333 35999999999976 55554 668999999999887544454444320
Q ss_pred ccccceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCC
Q 002778 131 INVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLP 210 (882)
Q Consensus 131 ~~~~~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~p 210 (882)
.++- -|+ |+... -
T Consensus 243 -----~pLl----RLs--------wnkqD-------------------p------------------------------- 255 (364)
T KOG0290|consen 243 -----TPLL----RLS--------WNKQD-------------------P------------------------------- 255 (364)
T ss_pred -----Ccce----eec--------cCcCC-------------------c-------------------------------
Confidence 0110 011 11100 0
Q ss_pred CCCCCCccCCCccccccccccccCCCceEEEEECCCC-cEEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEecC
Q 002778 211 DGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIM 288 (882)
Q Consensus 211 dgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~-~~v~~f~aH~spIsaLaFSP-dGtlLATAS~dGt~IrVWdi~ 288 (882)
.+++. -+.....|.|.|++.. ..+..|+.|+..|++|+|.| +...|+||+. +...-|||+.
T Consensus 256 -------------nymAT---f~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGD-D~qaliWDl~ 318 (364)
T KOG0290|consen 256 -------------NYMAT---FAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGD-DCQALIWDLQ 318 (364)
T ss_pred -------------hHHhh---hhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCC-cceEEEEecc
Confidence 00000 0123457889998864 57899999999999999999 4579999997 5678899995
Q ss_pred CCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEc-cCCCEEEEEeCCCeEEE
Q 002778 289 PSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS-HYSQWIAIVSSKGTCHV 345 (882)
Q Consensus 289 p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFS-PDg~~LAsgS~DGTVhI 345 (882)
..+..+ + ...-..|+. .+.|..|.|+ ..+.|||.+..+ ++.|
T Consensus 319 q~~~~~--~-------~dPilay~a-----~~EVNqi~Ws~~~~Dwiai~~~k-klei 361 (364)
T KOG0290|consen 319 QMPREN--G-------EDPILAYTA-----GGEVNQIQWSSSQPDWIAICFGK-KLEI 361 (364)
T ss_pred cccccC--C-------CCchhhhhc-----cceeeeeeecccCCCEEEEEecC-eeeE
Confidence 321001 0 011233432 2479999999 467899998755 3443
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=6.3e-06 Score=94.50 Aligned_cols=210 Identities=16% Similarity=0.151 Sum_probs=113.0
Q ss_pred CeEEEEECCCCeEEEEE-EcCCcEEEEEEcC--CEEEEEE-C---CeEEEEECCCCceeEEEecCCCcccCCCCcccccc
Q 002778 61 TAVRFYSFQSHCYEHVL-RFRSSVCMVRCSP--RIVAVGL-A---TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 133 (882)
Q Consensus 61 ~tVrlWDlkTG~~V~tL-kf~s~V~sV~~S~--rlLAV~~-d---~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~ 133 (882)
.+|.+||...+ ..+.+ .+...+.+.++++ +.|+.+. . .+|++||+.+++.. .+...+. .
T Consensus 184 ~~l~i~D~~g~-~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g----------~-- 249 (433)
T PRK04922 184 YALQVADSDGY-NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRG----------I-- 249 (433)
T ss_pred EEEEEECCCCC-CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCC----------C--
Confidence 46999998544 44444 4677888889886 5666544 2 36999999887653 2322221 0
Q ss_pred cceeeEEcC--cEEEEeCC-----CeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhcccccccccccc
Q 002778 134 GYGPMAVGP--RWLAYASN-----TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQ 206 (882)
Q Consensus 134 ~~g~lAlsp--R~LAyss~-----~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~ 206 (882)
....+++| +.|+|..+ .+.+|+...-..+.++. ..
T Consensus 250 -~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~------------------------------------~~- 291 (433)
T PRK04922 250 -NGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTN------------------------------------HF- 291 (433)
T ss_pred -ccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECcc------------------------------------CC-
Confidence 12346666 67776421 24444421000011110 00
Q ss_pred ccCCCCCCCCccCCCccccccccccccCCCc--eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC--CEE
Q 002778 207 ELLPDGSSSPVSPNSVWKVGRHAGADMDNAG--IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG--NNI 282 (882)
Q Consensus 207 ~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG--~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dG--t~I 282 (882)
+.....+++++++.+.+. .+..| .|.++|+.+++.. .+..+.......+|+|||++||..+.++ ..|
T Consensus 292 -----~~~~~~~~spDG~~l~f~---sd~~g~~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I 362 (433)
T PRK04922 292 -----GIDTEPTWAPDGKSIYFT---SDRGGRPQIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRI 362 (433)
T ss_pred -----CCccceEECCCCCEEEEE---ECCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEECCCCceeE
Confidence 001112233444444332 12333 4666677766543 3322333455789999999998766443 258
Q ss_pred EEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCC-CeEEEEECCCCC
Q 002778 283 NIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK-GTCHVFVLSPFG 352 (882)
Q Consensus 283 rVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~D-GTVhIWdI~~~g 352 (882)
.+||+.. | ....+..+. ...+.+|||||++|+..+.+ +.-+||-+...+
T Consensus 363 ~v~d~~~-------g-----------~~~~Lt~~~---~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 363 AVMDLST-------G-----------SVRTLTPGS---LDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred EEEECCC-------C-----------CeEECCCCC---CCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 8999853 2 122332221 24567999999998887764 344444443333
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.1e-07 Score=106.01 Aligned_cols=150 Identities=16% Similarity=0.175 Sum_probs=101.6
Q ss_pred ccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcc--cC
Q 002778 217 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM--RS 294 (882)
Q Consensus 217 ~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~--~~ 294 (882)
++++.++..++ ++..||++|||+..+...+..+.+|...|..|.|+|||++||+-+.+ ..+||++.+... ..
T Consensus 150 vaf~~~gs~la----tgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d--~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 150 VAFNGDGSKLA----TGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD--SARVWSVNTGAALARK 223 (398)
T ss_pred EEEcCCCCEee----eccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC--ceEEEEeccCchhhhc
Confidence 34454444443 67899999999998888888899999999999999999999999986 489999976310 00
Q ss_pred C--CCC-------CccccCCcc------------cEEEEE--Eec---------cc-CCcEEEEEEccCCCEEEEEeCCC
Q 002778 295 G--SGN-------HKYDWNSSH------------VHLYKL--HRG---------IT-SATIQDICFSHYSQWIAIVSSKG 341 (882)
Q Consensus 295 ~--sG~-------~~~d~sss~------------~~l~~L--~RG---------~t-~a~I~sLaFSPDg~~LAsgS~DG 341 (882)
+ .+. .+.|-.+.. ..++++ .++ .. ...|.+++-|+||+++|.|+.||
T Consensus 224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dG 303 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDG 303 (398)
T ss_pred CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCC
Confidence 0 000 000000000 011111 111 00 12689999999999999999999
Q ss_pred eEEEEECCCCCCccc-cccccCCCCCCcccCC
Q 002778 342 TCHVFVLSPFGGDSG-FQTLSSQGGDPYLFPV 372 (882)
Q Consensus 342 TVhIWdI~~~gg~~~-l~~H~~~~~~~~~sp~ 372 (882)
.|-|++........- -+.|..-+++..++|.
T Consensus 304 sVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pd 335 (398)
T KOG0771|consen 304 SVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPD 335 (398)
T ss_pred cEEEEEeceeeeeEeehhhheeeeeeEEEcCC
Confidence 999999877655443 3677766666666664
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.2e-06 Score=101.16 Aligned_cols=260 Identities=15% Similarity=0.174 Sum_probs=141.9
Q ss_pred CeEEEEECCCC-eEEEEEEcCCcEEEEEEcC---CEEEEEE-CCeEEEEECCCCce--eEEEe----cCCCcccCCCCcc
Q 002778 61 TAVRFYSFQSH-CYEHVLRFRSSVCMVRCSP---RIVAVGL-ATQIYCFDALTLEN--KFSVL----TYPVPQLAGQGAV 129 (882)
Q Consensus 61 ~tVrlWDlkTG-~~V~tLkf~s~V~sV~~S~---rlLAV~~-d~qI~IWDa~T~e~--l~tL~----t~p~p~~~~~~~~ 129 (882)
..+.|||++.. ..-..+..++.|..+.|++ .+||+|. .++|.+||++.+.. ...+. +|+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~------ 295 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVT------ 295 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeE------
Confidence 48999999875 5666777899999999876 6888876 68999999987765 22221 2333210
Q ss_pred cccccceeeEEcCcEEEEe-CCCeEeccCCCCC-CccCCC--CCC--CCCcCCCCCccEEEeeccchhhhh----cccc-
Q 002778 130 GINVGYGPMAVGPRWLAYA-SNTLLLSNSGRLS-PQNLTP--SGV--SPSTSPGGSSLVARYAMEHSKQFA----AGLS- 198 (882)
Q Consensus 130 g~~~~~g~lAlspR~LAys-s~~v~lwdtG~vs-~q~lt~--~~v--s~s~SP~~GslVA~~A~essk~la----~Gli- 198 (882)
.+-+..-+.+-+++..+ +.++..|++-.++ |+.... +.. ....+..-+.+...+-..--..+. .|.+
T Consensus 296 --~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~ 373 (555)
T KOG1587|consen 296 --AVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVY 373 (555)
T ss_pred --EEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEE
Confidence 00000000011233333 3467788653222 111100 000 000000111111111000000000 1111
Q ss_pred c-cc-----------cccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECC-CCcEEEEeccCCCCeEEEEE
Q 002778 199 K-TL-----------SKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV-TRAIISQFKAHTSPISALCF 265 (882)
Q Consensus 199 k-tL-----------s~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~-s~~~v~~f~aH~spIsaLaF 265 (882)
+ .. ..+..-....|....+..++-...+-+ + ..|-+|+||.-. ....+..+..+...|.+++|
T Consensus 374 ~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fl---s-~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaW 449 (555)
T KOG1587|consen 374 KGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFL---S-VGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAW 449 (555)
T ss_pred EEeccCCcccccccccccccccccCcceEeeecCCCccceee---e-eccceeEeccccCCCCcchhhhhccceeeeeEE
Confidence 0 01 111111111222223334433222222 2 239999999988 66778888889999999999
Q ss_pred CCCC-CEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEE
Q 002778 266 DPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCH 344 (882)
Q Consensus 266 SPdG-tlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVh 344 (882)
||.- ..+|++..+|+ |.|||+.-.. ...+.+...+ ......+.|+++|+.||+|...|++|
T Consensus 450 SptrpavF~~~d~~G~-l~iWDLl~~~---------------~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~ 511 (555)
T KOG1587|consen 450 SPTRPAVFATVDGDGN-LDIWDLLQDD---------------EEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTH 511 (555)
T ss_pred cCcCceEEEEEcCCCc-eehhhhhccc---------------cCCccccccc--ccccceeecCCCCcEEEEecCCCcEE
Confidence 9976 57788888776 9999996321 0122222222 23567788999999999999999999
Q ss_pred EEECCC
Q 002778 345 VFVLSP 350 (882)
Q Consensus 345 IWdI~~ 350 (882)
+|++..
T Consensus 512 ~~~l~~ 517 (555)
T KOG1587|consen 512 ILKLSE 517 (555)
T ss_pred EEEcCc
Confidence 999964
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.8e-07 Score=99.79 Aligned_cols=76 Identities=22% Similarity=0.305 Sum_probs=62.4
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEE
Q 002778 256 HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIA 335 (882)
Q Consensus 256 H~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LA 335 (882)
-...|++|+.|+||+++|-|+.+|. |-|+++..- +.++-.++.|. ..|+.|.|+||.++++
T Consensus 280 ~~~siSsl~VS~dGkf~AlGT~dGs-Vai~~~~~l-----------------q~~~~vk~aH~-~~VT~ltF~Pdsr~~~ 340 (398)
T KOG0771|consen 280 RFKSISSLAVSDDGKFLALGTMDGS-VAIYDAKSL-----------------QRLQYVKEAHL-GFVTGLTFSPDSRYLA 340 (398)
T ss_pred ccCcceeEEEcCCCcEEEEeccCCc-EEEEEecee-----------------eeeEeehhhhe-eeeeeEEEcCCcCccc
Confidence 3457999999999999999999886 789998531 34555555443 4799999999999999
Q ss_pred EEeCCCeEEEEECCC
Q 002778 336 IVSSKGTCHVFVLSP 350 (882)
Q Consensus 336 sgS~DGTVhIWdI~~ 350 (882)
+.|.+.+++|..|.-
T Consensus 341 svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 341 SVSSDNEAAVTKLAV 355 (398)
T ss_pred ccccCCceeEEEEee
Confidence 999999999998864
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.2e-06 Score=96.83 Aligned_cols=99 Identities=28% Similarity=0.418 Sum_probs=66.5
Q ss_pred CceEEEEECCCCcE--EEEeccCCCCeEEEEECCCCCEEEEEE-cCCCEEEEEecCCCcccCCCCCCccccCCcccEEEE
Q 002778 236 AGIVVVKDFVTRAI--ISQFKAHTSPISALCFDPSGTLLVTAS-VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 312 (882)
Q Consensus 236 dG~V~VWDl~s~~~--v~~f~aH~spIsaLaFSPdGtlLATAS-~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~ 312 (882)
...|.+||+.+++. +..+.+|. .+++|+|||+.||.++ .+|. ++||.+... + ..+..
T Consensus 227 ~~~i~i~dl~tg~~~~l~~~~g~~---~~~~wSPDG~~La~~~~~~g~-~~Iy~~d~~------~----------~~~~~ 286 (429)
T PRK01742 227 KSQLVVHDLRSGARKVVASFRGHN---GAPAFSPDGSRLAFASSKDGV-LNIYVMGAN------G----------GTPSQ 286 (429)
T ss_pred CcEEEEEeCCCCceEEEecCCCcc---CceeECCCCCEEEEEEecCCc-EEEEEEECC------C----------CCeEe
Confidence 35789999988753 44455554 3689999999998875 4454 667755321 1 12333
Q ss_pred EEecccCCcEEEEEEccCCCEEEEEe-CCCeEEEEECCCCCCccc
Q 002778 313 LHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFGGDSG 356 (882)
Q Consensus 313 L~RG~t~a~I~sLaFSPDg~~LAsgS-~DGTVhIWdI~~~gg~~~ 356 (882)
+..+ ...+.+.+|||||++|+.++ .+|..+||+++..++...
T Consensus 287 lt~~--~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~ 329 (429)
T PRK01742 287 LTSG--AGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGAS 329 (429)
T ss_pred eccC--CCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence 3222 23578899999999988766 478999999876655443
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.7e-07 Score=101.28 Aligned_cols=109 Identities=13% Similarity=0.163 Sum_probs=89.5
Q ss_pred ccCCCceEEEEECCCC-------cEEEEeccCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEecCCCcccCCCCCCcccc
Q 002778 232 DMDNAGIVVVKDFVTR-------AIISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW 303 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~-------~~v~~f~aH~spIsaLaFSPdG-tlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~ 303 (882)
+++.|.+|.||++..+ +.+..|.+|+..|--++|+|.. +.|+||+. +.+|.||++.+ |
T Consensus 99 SgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~-Dn~v~iWnv~t-------g------ 164 (472)
T KOG0303|consen 99 SGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGS-DNTVSIWNVGT-------G------ 164 (472)
T ss_pred cCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccC-CceEEEEeccC-------C------
Confidence 6789999999999754 4578899999999999999976 58889998 56799999965 4
Q ss_pred CCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCcccccccc
Q 002778 304 NSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 361 (882)
Q Consensus 304 sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~H~ 361 (882)
..+.++. ++..|++++|+.||.+|++++.|..|||||.....-...-.+|.
T Consensus 165 ----eali~l~---hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~he 215 (472)
T KOG0303|consen 165 ----EALITLD---HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHE 215 (472)
T ss_pred ----ceeeecC---CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeeccccc
Confidence 3455553 56789999999999999999999999999987755444445665
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.6e-06 Score=90.76 Aligned_cols=123 Identities=10% Similarity=0.159 Sum_probs=90.1
Q ss_pred ccCCCceEEEEECCCCc---EEEEeccCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcc
Q 002778 232 DMDNAGIVVVKDFVTRA---IISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH 307 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~---~v~~f~aH~spIsaLaFSPdG-tlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~ 307 (882)
+.+.|-++.|||++++. +..+|-||..+|..++|...| .++|+.+.||. +|+||+..- . +.
T Consensus 168 tSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGS-vRmFDLR~l-------e-------HS 232 (364)
T KOG0290|consen 168 TSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGS-VRMFDLRSL-------E-------HS 232 (364)
T ss_pred eecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCc-EEEEEeccc-------c-------cc
Confidence 56789999999999863 568899999999999999977 47899999886 899999641 0 11
Q ss_pred cEEEEEEecccCCcEEEEEEccCC-CEEEEEeCC-CeEEEEECCCCCCcc-ccccccCCCCCCcccC
Q 002778 308 VHLYKLHRGITSATIQDICFSHYS-QWIAIVSSK-GTCHVFVLSPFGGDS-GFQTLSSQGGDPYLFP 371 (882)
Q Consensus 308 ~~l~~L~RG~t~a~I~sLaFSPDg-~~LAsgS~D-GTVhIWdI~~~gg~~-~l~~H~~~~~~~~~sp 371 (882)
..+|+- ..+.....-|+|++.. +++|+--.| ..|.|-||.....++ .++.|.+.+.+....|
T Consensus 233 TIIYE~--p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaP 297 (364)
T KOG0290|consen 233 TIIYED--PSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAP 297 (364)
T ss_pred eEEecC--CCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecC
Confidence 244542 2224567889999755 677776554 469999998666554 7899987665544433
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=5e-06 Score=95.30 Aligned_cols=99 Identities=17% Similarity=0.189 Sum_probs=62.7
Q ss_pred CCCceEEEE--ECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEE
Q 002778 234 DNAGIVVVK--DFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 234 s~dG~V~VW--Dl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~ 311 (882)
..+|...|| |+.++. +..+..|...+...+|+|||+.|+..+..+....||.+... .+ ....+
T Consensus 259 ~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~-----~g--------~~~~l- 323 (427)
T PRK02889 259 SRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPAS-----GG--------AAQRV- 323 (427)
T ss_pred ccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECC-----CC--------ceEEE-
Confidence 345555555 555444 55666666666778999999999877765444788876421 01 01112
Q ss_pred EEEecccCCcEEEEEEccCCCEEEEEeCCC---eEEEEECCCC
Q 002778 312 KLHRGITSATIQDICFSHYSQWIAIVSSKG---TCHVFVLSPF 351 (882)
Q Consensus 312 ~L~RG~t~a~I~sLaFSPDg~~LAsgS~DG---TVhIWdI~~~ 351 (882)
.+ .| ......+|||||++||..+.++ .|.+||+...
T Consensus 324 t~-~g---~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g 362 (427)
T PRK02889 324 TF-TG---SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG 362 (427)
T ss_pred ec-CC---CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCC
Confidence 11 12 1234689999999999887665 5889998653
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.9e-07 Score=105.64 Aligned_cols=108 Identities=19% Similarity=0.250 Sum_probs=83.6
Q ss_pred ccCCCceEEEEECCC--------CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCcccc
Q 002778 232 DMDNAGIVVVKDFVT--------RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW 303 (882)
Q Consensus 232 tgs~dG~V~VWDl~s--------~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~ 303 (882)
+++.+|++++|.+.. .+.+.+|++|.+||.|++..+.|..+.||+.||+ |+.|++-+. +. ..|-
T Consensus 311 t~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~-I~~w~~p~n------~d-p~ds 382 (577)
T KOG0642|consen 311 TASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT-IRCWNLPPN------QD-PDDS 382 (577)
T ss_pred EeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce-eeeeccCCC------CC-cccc
Confidence 678999999999921 2577899999999999999999999999999886 999998431 10 0000
Q ss_pred CCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECC
Q 002778 304 NSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 349 (882)
Q Consensus 304 sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~ 349 (882)
. ....+....-|++.+ ||.|++|.....|+++|.|||+++|...
T Consensus 383 ~-dp~vl~~~l~Ghtda-vw~l~~s~~~~~Llscs~DgTvr~w~~~ 426 (577)
T KOG0642|consen 383 Y-DPSVLSGTLLGHTDA-VWLLALSSTKDRLLSCSSDGTVRLWEPT 426 (577)
T ss_pred c-Ccchhccceeccccc-eeeeeecccccceeeecCCceEEeeccC
Confidence 0 001122223588865 9999999999999999999999999864
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.1e-06 Score=93.66 Aligned_cols=72 Identities=19% Similarity=0.256 Sum_probs=53.3
Q ss_pred ccccccccCccCCCCCccc---ccCCeEEEEECCCCeEEEEEE----cCCcEEEEEEcC--CEEEE-EECCeEEEEECCC
Q 002778 39 SHLGGVRDGMMDSQSGNCV---NSPTAVRFYSFQSHCYEHVLR----FRSSVCMVRCSP--RIVAV-GLATQIYCFDALT 108 (882)
Q Consensus 39 ~~~~~v~~~~~~~~~~~~~---~sp~tVrlWDlkTG~~V~tLk----f~s~V~sV~~S~--rlLAV-~~d~qI~IWDa~T 108 (882)
||+++++.-...+..-|.+ +.+++||+|+++++.++..+. |++.|++|.|+. +++++ |.|.+|++|++.+
T Consensus 133 ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~ 212 (385)
T KOG1034|consen 133 GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNV 212 (385)
T ss_pred ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecCh
Confidence 4444454433333333333 578999999999999999985 899999999986 56665 6799999999985
Q ss_pred Cc
Q 002778 109 LE 110 (882)
Q Consensus 109 ~e 110 (882)
.+
T Consensus 213 ~~ 214 (385)
T KOG1034|consen 213 KE 214 (385)
T ss_pred hH
Confidence 44
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.7e-07 Score=109.22 Aligned_cols=246 Identities=15% Similarity=0.136 Sum_probs=153.9
Q ss_pred cCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcCC--EEEEEE-CCeEEEEECCCCceeEEEecCCCcccCCCCccccccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSPR--IVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 134 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~r--lLAV~~-d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~ 134 (882)
.+..|+||++.++.++.+.. |.+.|+.++.+.+ ++|++. |.-|++|.+.++..+..|.+|.. .
T Consensus 210 dd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtg-------------a 276 (1113)
T KOG0644|consen 210 DDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTG-------------A 276 (1113)
T ss_pred ccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhcccc-------------c
Confidence 56899999999999999997 8889999998864 334433 55699999999998888877764 2
Q ss_pred ceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccch-hhh-------hcccccccccccc
Q 002778 135 YGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHS-KQF-------AAGLSKTLSKYCQ 206 (882)
Q Consensus 135 ~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~ess-k~l-------a~GliktLs~~~~ 206 (882)
+.+++|+|+--...+.+..+|+.- +.+....| -...+.++.++.....+.. ... .++.+....-.|.
T Consensus 277 vtaiafsP~~sss~dgt~~~wd~r-~~~~~y~p----rp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~ 351 (1113)
T KOG0644|consen 277 VTAIAFSPRASSSDDGTCRIWDAR-LEPRIYVP----RPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWR 351 (1113)
T ss_pred eeeeccCccccCCCCCceEecccc-ccccccCC----CCCCcccccceeeeeccccccccccccCCcccccchhhHhhhh
Confidence 467888886522223478899852 22211111 1112344555443332211 111 1111100000000
Q ss_pred ccCCCCCCCCccC-CCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEE-EEEEcCCCEEEE
Q 002778 207 ELLPDGSSSPVSP-NSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLL-VTASVYGNNINI 284 (882)
Q Consensus 207 ~l~pdgs~s~~S~-ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlL-ATAS~dGt~IrV 284 (882)
. ....++. .++..... .++-.+-.+.+|++.+|..+..+.+|.+++..|.|+|=...+ .+|+.||. +.|
T Consensus 352 ~-----~~lif~t~ssd~~~~~---~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgs-t~i 422 (1113)
T KOG0644|consen 352 S-----NLLIFVTRSSDLSSIV---VTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGS-TII 422 (1113)
T ss_pred c-----cceEEEeccccccccc---eeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCc-eEe
Confidence 0 0000000 00000000 034567788999999999999999999999999999966544 57888887 569
Q ss_pred EecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 002778 285 FRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 350 (882)
Q Consensus 285 Wdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~ 350 (882)
||+.. | ...+.|. .|+ ..+.+-+||+||+.++...+-|.+.|+....
T Consensus 423 wdi~e-------g--------~pik~y~--~gh--~kl~d~kFSqdgts~~lsd~hgql~i~g~gq 469 (1113)
T KOG0644|consen 423 WDIWE-------G--------IPIKHYF--IGH--GKLVDGKFSQDGTSIALSDDHGQLYILGTGQ 469 (1113)
T ss_pred eeccc-------C--------Ccceeee--ccc--ceeeccccCCCCceEecCCCCCceEEeccCC
Confidence 99942 2 2234444 342 3578889999999999999999999876543
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.9e-05 Score=90.61 Aligned_cols=210 Identities=16% Similarity=0.105 Sum_probs=111.3
Q ss_pred CeEEEEECCCCeEEEEE-EcCCcEEEEEEcC--CEEEEEEC----CeEEEEECCCCceeEEEecCCCcccCCCCcccccc
Q 002778 61 TAVRFYSFQSHCYEHVL-RFRSSVCMVRCSP--RIVAVGLA----TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 133 (882)
Q Consensus 61 ~tVrlWDlkTG~~V~tL-kf~s~V~sV~~S~--rlLAV~~d----~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~ 133 (882)
..|.+||. .|...+.+ .+...+.+.++++ +.|+.+.. .+|++||+.+++.. .+...+. .
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~-~l~~~~g----------~-- 241 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR-VVANFKG----------S-- 241 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-EeecCCC----------C--
Confidence 35777776 44444444 4677888999986 56666542 35999999988753 2322221 0
Q ss_pred cceeeEEcC--cEEEEeCC---CeEeccC--CCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhcccccccccccc
Q 002778 134 GYGPMAVGP--RWLAYASN---TLLLSNS--GRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQ 206 (882)
Q Consensus 134 ~~g~lAlsp--R~LAyss~---~v~lwdt--G~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~ 206 (882)
....+++| +.|+|..+ ...||.. ..-..+.++ ..
T Consensus 242 -~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt------------------------------------~~-- 282 (427)
T PRK02889 242 -NSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLT------------------------------------QS-- 282 (427)
T ss_pred -ccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECC------------------------------------CC--
Confidence 12456777 67877522 2334421 000001111 00
Q ss_pred ccCCCCCCCCccCCCccccccccccccCCCceEEEEE--CCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC--EE
Q 002778 207 ELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKD--FVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN--NI 282 (882)
Q Consensus 207 ~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWD--l~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt--~I 282 (882)
.+.......+++++.+.+. .+..|...||. +.+++.. .+..+.......+|||||++||.++.++. .|
T Consensus 283 ----~~~~~~~~wSpDG~~l~f~---s~~~g~~~Iy~~~~~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I 354 (427)
T PRK02889 283 ----SGIDTEPFFSPDGRSIYFT---SDRGGAPQIYRMPASGGAAQ-RVTFTGSYNTSPRISPDGKLLAYISRVGGAFKL 354 (427)
T ss_pred ----CCCCcCeEEcCCCCEEEEE---ecCCCCcEEEEEECCCCceE-EEecCCCCcCceEECCCCCEEEEEEccCCcEEE
Confidence 0001112233445544432 12345555554 4454432 22222233446789999999998775443 58
Q ss_pred EEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCC-eEEEEECCCCC
Q 002778 283 NIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKG-TCHVFVLSPFG 352 (882)
Q Consensus 283 rVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DG-TVhIWdI~~~g 352 (882)
.+||+.. | ....+..+ ....+.+|||||++|+.++.++ .-.||-+...+
T Consensus 355 ~v~d~~~-------g-----------~~~~lt~~---~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g 404 (427)
T PRK02889 355 YVQDLAT-------G-----------QVTALTDT---TRDESPSFAPNGRYILYATQQGGRSVLAAVSSDG 404 (427)
T ss_pred EEEECCC-------C-----------CeEEccCC---CCccCceECCCCCEEEEEEecCCCEEEEEEECCC
Confidence 8999853 2 12222222 2246789999999999887654 44455444434
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.7e-05 Score=90.93 Aligned_cols=92 Identities=12% Similarity=0.164 Sum_probs=60.0
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC--CEEEEEecCCCcccCCCCCCccccCCcccEEEEEE
Q 002778 237 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG--NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 314 (882)
Q Consensus 237 G~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dG--t~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~ 314 (882)
..|.+||+.+++. ..+..|.......+|+|||+.||.++..+ ..|.+||+.. + ....+.
T Consensus 270 ~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g-------~-----------~~~~lt 330 (435)
T PRK05137 270 TDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG-------S-----------NPRRIS 330 (435)
T ss_pred ceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC-------C-----------CeEEee
Confidence 3577889887764 55666666677899999999998877533 2456666532 1 222332
Q ss_pred ecccCCcEEEEEEccCCCEEEEEeCC-C--eEEEEECC
Q 002778 315 RGITSATIQDICFSHYSQWIAIVSSK-G--TCHVFVLS 349 (882)
Q Consensus 315 RG~t~a~I~sLaFSPDg~~LAsgS~D-G--TVhIWdI~ 349 (882)
.+ ...+...+|||||++|+..+.+ + .+.+|++.
T Consensus 331 ~~--~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~ 366 (435)
T PRK05137 331 FG--GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPD 366 (435)
T ss_pred cC--CCcccCeEECCCCCEEEEEEcCCCceEEEEEECC
Confidence 22 1235678999999999988754 3 45556653
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=8e-06 Score=93.68 Aligned_cols=95 Identities=23% Similarity=0.297 Sum_probs=62.0
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEE-
Q 002778 236 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH- 314 (882)
Q Consensus 236 dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~- 314 (882)
...|.+||+.+++. ..+..|.......+|+|||+.|+..+..+....||.+... .+ ....+.
T Consensus 271 ~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~-----~g-----------~~~~lt~ 333 (433)
T PRK04922 271 NPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAAS-----GG-----------SAERLTF 333 (433)
T ss_pred CceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC-----CC-----------CeEEeec
Confidence 34799999988764 5566666556778999999999887754333455544210 01 111221
Q ss_pred ecccCCcEEEEEEccCCCEEEEEeCCC---eEEEEECCC
Q 002778 315 RGITSATIQDICFSHYSQWIAIVSSKG---TCHVFVLSP 350 (882)
Q Consensus 315 RG~t~a~I~sLaFSPDg~~LAsgS~DG---TVhIWdI~~ 350 (882)
.| .....++|||||++|+..+.++ .|.+|++..
T Consensus 334 ~g---~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~ 369 (433)
T PRK04922 334 QG---NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST 369 (433)
T ss_pred CC---CCccCEEECCCCCEEEEEECCCCceeEEEEECCC
Confidence 12 2245689999999999876543 588888854
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.1e-07 Score=106.23 Aligned_cols=99 Identities=14% Similarity=0.300 Sum_probs=78.7
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEec
Q 002778 237 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 316 (882)
Q Consensus 237 G~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG 316 (882)
-.|+||...+-..+..|..|.-.|+-|+|||||++|+++|.| +++.||..+... .. .. . +.....
T Consensus 552 AvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRD-Rt~sl~~~~~~~----~~--------e~-~-fa~~k~ 616 (764)
T KOG1063|consen 552 AVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRD-RTVSLYEVQEDI----KD--------EF-R-FACLKA 616 (764)
T ss_pred eEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecC-ceEEeeeeeccc----ch--------hh-h-hccccc
Confidence 469999999988888999999999999999999999999995 458999985420 00 00 1 111122
Q ss_pred ccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 317 ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 317 ~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
|+ ..|++.+|+||++++|++|.|.+|.||.+...
T Consensus 617 Ht-RIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 617 HT-RIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred cc-eEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 22 37999999999999999999999999998754
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.45 E-value=5e-06 Score=92.47 Aligned_cols=102 Identities=21% Similarity=0.194 Sum_probs=83.5
Q ss_pred CCCceEEEEECCCC-cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEE
Q 002778 234 DNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 312 (882)
Q Consensus 234 s~dG~V~VWDl~s~-~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~ 312 (882)
..-+.|++||...+ +++.+|.--..+|+++...|+|+++.+|...|. +..||+.. + +++..
T Consensus 223 T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~-l~~FD~r~-------~----------kl~g~ 284 (412)
T KOG3881|consen 223 TRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQ-LAKFDLRG-------G----------KLLGC 284 (412)
T ss_pred ecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccch-hheecccC-------c----------eeecc
Confidence 34578999999876 578899888999999999999999999998776 88999963 2 23333
Q ss_pred EEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCc
Q 002778 313 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD 354 (882)
Q Consensus 313 L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~ 354 (882)
...|.+. .|.+|.-.|..++||+++.|.-+||||+.+.+-.
T Consensus 285 ~~kg~tG-sirsih~hp~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 285 GLKGITG-SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred ccCCccC-CcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence 3346554 5999999999999999999999999999885443
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=2e-05 Score=90.36 Aligned_cols=81 Identities=12% Similarity=0.101 Sum_probs=52.4
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC--CEEEEEecCCCcccCCCCCCccccCCcccEEEEEEe
Q 002778 238 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG--NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 315 (882)
Q Consensus 238 ~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dG--t~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~R 315 (882)
.|.+||+.+++. ..+..+...+...+|+|||+.||..+.++ ..|.+||+.. + ....+..
T Consensus 315 ~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~-------~-----------~~~~lt~ 375 (435)
T PRK05137 315 QLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDG-------S-----------GERILTS 375 (435)
T ss_pred eEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCC-------C-----------ceEeccC
Confidence 577788776543 34433455567789999999998876543 3466777632 1 1122222
Q ss_pred cccCCcEEEEEEccCCCEEEEEeCC
Q 002778 316 GITSATIQDICFSHYSQWIAIVSSK 340 (882)
Q Consensus 316 G~t~a~I~sLaFSPDg~~LAsgS~D 340 (882)
+ ..+.+++|||||++|+..+.+
T Consensus 376 ~---~~~~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 376 G---FLVEGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred C---CCCCCCeECCCCCEEEEEEcc
Confidence 2 236789999999999887654
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=9.9e-06 Score=88.72 Aligned_cols=117 Identities=18% Similarity=0.161 Sum_probs=74.4
Q ss_pred cCCCccccccccccccCCCceEEEEECCC-C---cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCccc
Q 002778 218 SPNSVWKVGRHAGADMDNAGIVVVKDFVT-R---AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR 293 (882)
Q Consensus 218 S~ss~~k~~~la~~tgs~dG~V~VWDl~s-~---~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~ 293 (882)
.++++++.+..+ ...++.|.+||+.+ + +.+..+. +......++|+|+|++|.+++..+..|.|||+.+.
T Consensus 86 ~~~~~g~~l~v~---~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~--- 158 (330)
T PRK11028 86 STDHQGRFLFSA---SYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD--- 158 (330)
T ss_pred EECCCCCEEEEE---EcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC---
Confidence 344455544332 23478999999964 2 2333333 33345678999999999888876677999999641
Q ss_pred CCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeC-CCeEEEEECCCC
Q 002778 294 SGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS-KGTCHVFVLSPF 351 (882)
Q Consensus 294 ~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~-DGTVhIWdI~~~ 351 (882)
|. ..........+..| .....++|+|||++|.+++. +++|.+|+++..
T Consensus 159 ---g~----l~~~~~~~~~~~~g---~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~ 207 (330)
T PRK11028 159 ---GH----LVAQEPAEVTTVEG---AGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDP 207 (330)
T ss_pred ---Cc----ccccCCCceecCCC---CCCceEEECCCCCEEEEEecCCCEEEEEEEeCC
Confidence 10 00000011122223 23567999999999988876 899999999854
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.8e-06 Score=93.33 Aligned_cols=107 Identities=15% Similarity=0.075 Sum_probs=71.6
Q ss_pred ccCCCceEEEEECCCCcE----EEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcc
Q 002778 232 DMDNAGIVVVKDFVTRAI----ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH 307 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~----v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~ 307 (882)
+++.|++++|||+..... +-....|+.+|.+..|||+|-.|+|.+.|. .|||||..-- ++. .......
T Consensus 340 T~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~-~IRv~dss~~------sa~-~~p~~~I 411 (498)
T KOG4328|consen 340 TASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDN-EIRVFDSSCI------SAK-DEPLGTI 411 (498)
T ss_pred ecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCC-ceEEeecccc------ccc-CCcccee
Confidence 678999999999986432 234457999999999999987799999866 4999998310 000 0000000
Q ss_pred cEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECC
Q 002778 308 VHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 349 (882)
Q Consensus 308 ~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~ 349 (882)
.|-...-|-. .+..-+|-||..+|+++-.-..|-|||-+
T Consensus 412 ~Hn~~t~Rwl---T~fKA~W~P~~~li~vg~~~r~IDv~~~~ 450 (498)
T KOG4328|consen 412 PHNNRTGRWL---TPFKAAWDPDYNLIVVGRYPRPIDVFDGN 450 (498)
T ss_pred eccCcccccc---cchhheeCCCccEEEEeccCcceeEEcCC
Confidence 1111111111 13345799999999999988889998754
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.4e-05 Score=82.92 Aligned_cols=98 Identities=13% Similarity=0.264 Sum_probs=73.4
Q ss_pred CCCceEEEEECCCCcEEEEeccCCCCeEEEEE-CCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEE
Q 002778 234 DNAGIVVVKDFVTRAIISQFKAHTSPISALCF-DPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 312 (882)
Q Consensus 234 s~dG~V~VWDl~s~~~v~~f~aH~spIsaLaF-SPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~ 312 (882)
..||.+.-||+++|+....+++|++.|.+++- +.+|+ +.|++.||+ +||||+++. +++..
T Consensus 133 gGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~q-ilsG~EDGt-vRvWd~kt~-----------------k~v~~ 193 (325)
T KOG0649|consen 133 GGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQ-ILSGAEDGT-VRVWDTKTQ-----------------KHVSM 193 (325)
T ss_pred cCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcc-eeecCCCcc-EEEEecccc-----------------ceeEE
Confidence 46899999999999999999999999999998 66665 558999887 899999762 22222
Q ss_pred --------EEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCC
Q 002778 313 --------LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 353 (882)
Q Consensus 313 --------L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg 353 (882)
+.|-+-...|-+++- +..||+.|.-. ...||.+.....
T Consensus 194 ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp-~lslwhLrsse~ 239 (325)
T KOG0649|consen 194 IEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGP-KLSLWHLRSSES 239 (325)
T ss_pred eccccChhhcCcccCceeEEEec--cCceEEecCCC-ceeEEeccCCCc
Confidence 224333345766665 55699888644 588999976543
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.34 E-value=2e-05 Score=91.37 Aligned_cols=247 Identities=16% Similarity=0.139 Sum_probs=144.6
Q ss_pred cCCcEEEEEEcC--CEEEEEE-CCeEEEEECCCCceeEEEecCCCcccCCCCcccccccceeeEEcC----cEEEEeC-C
Q 002778 79 FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP----RWLAYAS-N 150 (882)
Q Consensus 79 f~s~V~sV~~S~--rlLAV~~-d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g~lAlsp----R~LAyss-~ 150 (882)
|.+.|++|...+ ..||.|. +++++||.+.|+.|++++..... +..+|++| ..||.+- .
T Consensus 399 Htg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~--------------I~~vaw~P~~~~~vLAvA~~~ 464 (733)
T KOG0650|consen 399 HTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSE--------------IRSVAWNPLSDLCVLAVAVGE 464 (733)
T ss_pred cCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecce--------------eEEEEecCCCCceeEEEEecC
Confidence 677888888765 7888886 57899999999999999864321 24555655 4455442 2
Q ss_pred CeEeccC--CC-CC----CccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCCCCccCCCcc
Q 002778 151 TLLLSNS--GR-LS----PQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVW 223 (882)
Q Consensus 151 ~v~lwdt--G~-vs----~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~s~~S~ss~~ 223 (882)
.+.|-+. |. +. -+.|.. .+....|+. .+|........++-.++. ..+........+.--..+
T Consensus 465 ~~~ivnp~~G~~~e~~~t~ell~~--~~~~~~p~~--~~~~W~~~~~~e~~~~v~-------~~I~~~k~i~~vtWHrkG 533 (733)
T KOG0650|consen 465 CVLIVNPIFGDRLEVGPTKELLAS--APNESEPDA--AVVTWSRASLDELEKGVC-------IVIKHPKSIRQVTWHRKG 533 (733)
T ss_pred ceEEeCccccchhhhcchhhhhhc--CCCccCCcc--cceeechhhhhhhccceE-------EEEecCCccceeeeecCC
Confidence 2333332 21 10 001100 000011111 223333322222222211 000000000011111122
Q ss_pred ccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCcccc
Q 002778 224 KVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW 303 (882)
Q Consensus 224 k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~ 303 (882)
.+++....+ +....|.|+++...+...-|+-..+-|.++.|.|.--+|+.|+. +.|||||+.. +
T Consensus 534 DYlatV~~~-~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq--~~vRiYdL~k-------q------ 597 (733)
T KOG0650|consen 534 DYLATVMPD-SGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ--RSVRIYDLSK-------Q------ 597 (733)
T ss_pred ceEEEeccC-CCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec--cceEEEehhH-------H------
Confidence 333332211 23456889999887777778777788999999999999999987 3599999953 1
Q ss_pred CCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCcc-ccccccCCCCCCcccCC
Q 002778 304 NSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS-GFQTLSSQGGDPYLFPV 372 (882)
Q Consensus 304 sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~-~l~~H~~~~~~~~~sp~ 372 (882)
..+.+|..|. ..|.+++.+|.|.-|+.+|.|+.+..||++-...+. +++-|...+....+++.
T Consensus 598 ----elvKkL~tg~--kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~r 661 (733)
T KOG0650|consen 598 ----ELVKKLLTGS--KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKR 661 (733)
T ss_pred ----HHHHHHhcCC--eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccc
Confidence 3444554442 269999999999999999999999999998765443 67788765555555553
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.9e-05 Score=85.92 Aligned_cols=128 Identities=20% Similarity=0.278 Sum_probs=83.9
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEe
Q 002778 236 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 315 (882)
Q Consensus 236 dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~R 315 (882)
+..|+|||..++..+-...---+.++-|.|||||.+|..|.-|+ +++||+.... |.... +.+
T Consensus 217 sssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~da-vfrlw~e~q~------------wt~er---w~l-- 278 (445)
T KOG2139|consen 217 SSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDA-VFRLWQENQS------------WTKER---WIL-- 278 (445)
T ss_pred cceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccc-eeeeehhccc------------ceecc---eec--
Confidence 45799999999876655544557789999999999999999866 5999976321 22221 222
Q ss_pred cccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccccc------cccCCCC--------CCc--ccCCCCCCccc
Q 002778 316 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQ------TLSSQGG--------DPY--LFPVLSLPWWC 379 (882)
Q Consensus 316 G~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~------~H~~~~~--------~~~--~sp~~~lpw~~ 379 (882)
| ...|+.-+|+|+|++|.-++... -+||.+.-.+....+. .|.-.++ +.. --+...++|++
T Consensus 279 g--sgrvqtacWspcGsfLLf~~sgs-p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDp 355 (445)
T KOG2139|consen 279 G--SGRVQTACWSPCGSFLLFACSGS-PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDP 355 (445)
T ss_pred c--CCceeeeeecCCCCEEEEEEcCC-ceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECC
Confidence 2 23799999999999988776554 4688876544433332 2211111 101 12355678888
Q ss_pred CCCCc
Q 002778 380 TSSGI 384 (882)
Q Consensus 380 ~s~~~ 384 (882)
..++.
T Consensus 356 sGeyL 360 (445)
T KOG2139|consen 356 SGEYL 360 (445)
T ss_pred CCCEE
Confidence 88875
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00029 Score=79.56 Aligned_cols=256 Identities=12% Similarity=0.041 Sum_probs=132.0
Q ss_pred CeEEEEECCCCeEEEEEE--cCCcEEEEEEcCCEEEEEE-----------CCeEEEEECCCCceeEEEecCCCcccCCCC
Q 002778 61 TAVRFYSFQSHCYEHVLR--FRSSVCMVRCSPRIVAVGL-----------ATQIYCFDALTLENKFSVLTYPVPQLAGQG 127 (882)
Q Consensus 61 ~tVrlWDlkTG~~V~tLk--f~s~V~sV~~S~rlLAV~~-----------d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~ 127 (882)
++|.+.|..+++.+.++. +.-... +.-+++.|.++. ++.|.+||+.|++.+..+...+.|.. +
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~--~- 102 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF--L- 102 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh--h-
Confidence 789999999999999997 232332 334445665543 36799999999999988875444421 0
Q ss_pred cccccccceeeEEcC--cEEEEe----CCCeEeccCCCCC-CccCCCCC-CCC---------CcCCCCCccEEEeeccch
Q 002778 128 AVGINVGYGPMAVGP--RWLAYA----SNTLLLSNSGRLS-PQNLTPSG-VSP---------STSPGGSSLVARYAMEHS 190 (882)
Q Consensus 128 ~~g~~~~~g~lAlsp--R~LAys----s~~v~lwdtG~vs-~q~lt~~~-vs~---------s~SP~~GslVA~~A~ess 190 (882)
+......++++| +||-.. .+.+.+.|..... ......|+ ... ..++++..+...+..+..
T Consensus 103 ---~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~ 179 (352)
T TIGR02658 103 ---VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGN 179 (352)
T ss_pred ---ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCc
Confidence 011124577877 666533 2345555532111 00000010 000 001111111000000000
Q ss_pred hhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCC-----CcEEEEecc-------CCC
Q 002778 191 KQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT-----RAIISQFKA-------HTS 258 (882)
Q Consensus 191 k~la~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s-----~~~v~~f~a-------H~s 258 (882)
...+.. +.+..- .. +-.....+++ .+++.+- . +..|+|.+.|+.. .+.+..+.. ...
T Consensus 180 ~~~~~~--~vf~~~-~~--~v~~rP~~~~-~dg~~~~-v----s~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~ 248 (352)
T TIGR02658 180 PKIKPT--EVFHPE-DE--YLINHPAYSN-KSGRLVW-P----TYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPG 248 (352)
T ss_pred eEEeee--eeecCC-cc--ccccCCceEc-CCCcEEE-E----ecCCeEEEEecCCCcceecceeeeccccccccccCCC
Confidence 000000 000000 00 0000001111 1233221 1 2349999999643 333333321 122
Q ss_pred CeEEEEECCCCCEEEEEEc---------CCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEcc
Q 002778 259 PISALCFDPSGTLLVTASV---------YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH 329 (882)
Q Consensus 259 pIsaLaFSPdGtlLATAS~---------dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSP 329 (882)
.+.-++|+|+|+.|..+.. .++.|.|+|+.+ + +.+.++.-| ..++.|+|||
T Consensus 249 g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t-------~----------kvi~~i~vG---~~~~~iavS~ 308 (352)
T TIGR02658 249 GWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT-------G----------KRLRKIELG---HEIDSINVSQ 308 (352)
T ss_pred cceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC-------C----------eEEEEEeCC---CceeeEEECC
Confidence 3344999999988877431 125688889854 2 456666544 4689999999
Q ss_pred CCC-EEEEEe-CCCeEEEEECCCCCCc
Q 002778 330 YSQ-WIAIVS-SKGTCHVFVLSPFGGD 354 (882)
Q Consensus 330 Dg~-~LAsgS-~DGTVhIWdI~~~gg~ 354 (882)
|++ +|.+.+ .+++|+|+|+......
T Consensus 309 Dgkp~lyvtn~~s~~VsViD~~t~k~i 335 (352)
T TIGR02658 309 DAKPLLYALSTGDKTLYIFDAETGKEL 335 (352)
T ss_pred CCCeEEEEeCCCCCcEEEEECcCCeEE
Confidence 999 777776 6899999999876443
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00024 Score=81.11 Aligned_cols=213 Identities=11% Similarity=0.044 Sum_probs=110.1
Q ss_pred eEEEEECCCCeEEEEEEcCCcEEEEEEcC--CEEEEEE-C---CeEEEEECCCCceeEEEecCCCcccCCCCcccccccc
Q 002778 62 AVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL-A---TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGY 135 (882)
Q Consensus 62 tVrlWDlkTG~~V~tLkf~s~V~sV~~S~--rlLAV~~-d---~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~ 135 (882)
.|.++|...+.....+.+...+.+.++++ +.|+... . .+|++||+.+++.. .+...+.. .
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~-~l~~~~g~-------------~ 245 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE-QITNFEGL-------------N 245 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE-EccCCCCC-------------c
Confidence 57788887655444445777889899986 5665543 2 25999999988653 23221110 1
Q ss_pred eeeEEcC--cEEEEeCC-----CeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhcccccccccccccc
Q 002778 136 GPMAVGP--RWLAYASN-----TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQEL 208 (882)
Q Consensus 136 g~lAlsp--R~LAyss~-----~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l 208 (882)
...+++| ++|+|..+ .+.+++...-..+.++. ..
T Consensus 246 ~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~------------------------------------~~--- 286 (430)
T PRK00178 246 GAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTN------------------------------------HP--- 286 (430)
T ss_pred CCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEccc------------------------------------CC---
Confidence 2356776 78887532 12233321000011111 00
Q ss_pred CCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC--CEEEEEe
Q 002778 209 LPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG--NNINIFR 286 (882)
Q Consensus 209 ~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dG--t~IrVWd 286 (882)
+......++++++.+.+.. .......|.++|+.+++... +..........+|+|||+.|+..+.++ ..|.+||
T Consensus 287 ---~~~~~~~~spDg~~i~f~s-~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~d 361 (430)
T PRK00178 287 ---AIDTEPFWGKDGRTLYFTS-DRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQD 361 (430)
T ss_pred ---CCcCCeEECCCCCEEEEEE-CCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEE
Confidence 0001112223334333321 11112357778888776432 221122334578999999998876543 2466777
Q ss_pred cCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCC-CeEEEEECCCCCC
Q 002778 287 IMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK-GTCHVFVLSPFGG 353 (882)
Q Consensus 287 i~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~D-GTVhIWdI~~~gg 353 (882)
+.. | ....+..+ ......+|||||++|+.++.+ |.-+||-+...+.
T Consensus 362 l~t-------g-----------~~~~lt~~---~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 362 LQR-------G-----------SVRILTDT---SLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred CCC-------C-----------CEEEccCC---CCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 743 2 12222111 112356899999999987754 4445554444343
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.29 E-value=8.4e-06 Score=93.93 Aligned_cols=207 Identities=18% Similarity=0.216 Sum_probs=119.0
Q ss_pred cCCeEEEEEC---C-----CCeEEEEEE-cCCcEEEEEEcC--CE-EEEEECCeEEEEECCCCc----------eeEEEe
Q 002778 59 SPTAVRFYSF---Q-----SHCYEHVLR-FRSSVCMVRCSP--RI-VAVGLATQIYCFDALTLE----------NKFSVL 116 (882)
Q Consensus 59 sp~tVrlWDl---k-----TG~~V~tLk-f~s~V~sV~~S~--rl-LAV~~d~qI~IWDa~T~e----------~l~tL~ 116 (882)
-+++|++|.| + .-+.+.+|+ |.++|.+|.+.. +. +..+.|+.|++|++.... ...++.
T Consensus 314 ed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~ 393 (577)
T KOG0642|consen 314 EDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLL 393 (577)
T ss_pred cccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhcccee
Confidence 5689999999 2 234666776 889999999865 44 445668999999654211 112233
Q ss_pred cCCCcccCCCCcccccccceeeEEcC---cEEEEeC-CCeEeccCCCCCCccCCC---CCCCCCcCCCCCccEEEeeccc
Q 002778 117 TYPVPQLAGQGAVGINVGYGPMAVGP---RWLAYAS-NTLLLSNSGRLSPQNLTP---SGVSPSTSPGGSSLVARYAMEH 189 (882)
Q Consensus 117 t~p~p~~~~~~~~g~~~~~g~lAlsp---R~LAyss-~~v~lwdtG~vs~q~lt~---~~vs~s~SP~~GslVA~~A~es 189 (882)
+|.. ..+.+++++ +.|.++. .++++|..+..++-.+.. .+++++.. +...+.
T Consensus 394 Ghtd-------------avw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd--------~~ss~~ 452 (577)
T KOG0642|consen 394 GHTD-------------AVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVD--------RTSSRP 452 (577)
T ss_pred cccc-------------ceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEe--------eccchh
Confidence 3433 135677765 6666654 479999865554422222 12333221 001111
Q ss_pred hhhhhcccc-----ccccccccccCCCCCCCCcc--CCCcccc-----ccccccccCCCceEEEEECCCCcEEEEeccCC
Q 002778 190 SKQFAAGLS-----KTLSKYCQELLPDGSSSPVS--PNSVWKV-----GRHAGADMDNAGIVVVKDFVTRAIISQFKAHT 257 (882)
Q Consensus 190 sk~la~Gli-----ktLs~~~~~l~pdgs~s~~S--~ss~~k~-----~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~ 257 (882)
+..++.... .++.--....+...+.++.. .+--.++ +.+. -++..+++|+++|..++..+....+|.
T Consensus 453 a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~-~~~hed~~Ir~~dn~~~~~l~s~~a~~ 531 (577)
T KOG0642|consen 453 AHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADIT-FTAHEDRSIRFFDNKTGKILHSMVAHK 531 (577)
T ss_pred HhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCee-EecccCCceecccccccccchheeecc
Confidence 122222110 00000000000000010000 0000000 0001 156889999999999999999999999
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCEEEEEecC
Q 002778 258 SPISALCFDPSGTLLVTASVYGNNINIFRIM 288 (882)
Q Consensus 258 spIsaLaFSPdGtlLATAS~dGt~IrVWdi~ 288 (882)
..+++++|.|+|-+|++++.|+. +++|.+.
T Consensus 532 ~svtslai~~ng~~l~s~s~d~s-v~l~kld 561 (577)
T KOG0642|consen 532 DSVTSLAIDPNGPYLMSGSHDGS-VRLWKLD 561 (577)
T ss_pred ceecceeecCCCceEEeecCCce-eehhhcc
Confidence 99999999999999999999876 8999984
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00011 Score=82.70 Aligned_cols=93 Identities=17% Similarity=0.200 Sum_probs=60.8
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC--EEEEEecCCCcccCCCCCCccccCCcccEEEEEE
Q 002778 237 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN--NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 314 (882)
Q Consensus 237 G~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt--~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~ 314 (882)
..|.+||+.++.. ..+..|.......+|+|||+.|+..+.++. .|.++++.. + ....+.
T Consensus 258 ~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~-------~-----------~~~~l~ 318 (417)
T TIGR02800 258 PDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG-------G-----------EVRRLT 318 (417)
T ss_pred ccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC-------C-----------CEEEee
Confidence 4588889887653 445555555567799999999887765443 344455431 1 122222
Q ss_pred ecccCCcEEEEEEccCCCEEEEEeCCC---eEEEEECCC
Q 002778 315 RGITSATIQDICFSHYSQWIAIVSSKG---TCHVFVLSP 350 (882)
Q Consensus 315 RG~t~a~I~sLaFSPDg~~LAsgS~DG---TVhIWdI~~ 350 (882)
.+ ...+..++|||||++|+.++.++ .|.+|++..
T Consensus 319 ~~--~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~ 355 (417)
T TIGR02800 319 FR--GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG 355 (417)
T ss_pred cC--CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC
Confidence 11 12467789999999999998776 677777764
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.4e-05 Score=93.12 Aligned_cols=144 Identities=15% Similarity=0.174 Sum_probs=107.1
Q ss_pred cEEEEEEcC--CEEEEEECCeEEEEECCCCceeEEEecCCCcccCCCCcccccccceeeEEcCcEEEEeCCCeEeccCCC
Q 002778 82 SVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGR 159 (882)
Q Consensus 82 ~V~sV~~S~--rlLAV~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g~lAlspR~LAyss~~v~lwdtG~ 159 (882)
.|++|+|.| ..|+++.++++++||...|..+.+|.+|... . ..+||+-++.++
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDt---------------V-----ycVAys~dGkrF----- 68 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDT---------------V-----YCVAYAKDGKRF----- 68 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccce---------------E-----EEEEEccCCcee-----
Confidence 688999987 4677778899999999999999999988762 1 125665432111
Q ss_pred CCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceE
Q 002778 160 LSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIV 239 (882)
Q Consensus 160 vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V 239 (882)
+ +|+.|.+|
T Consensus 69 ---------------------------------------------------------------------A--SG~aDK~V 77 (1081)
T KOG1538|consen 69 ---------------------------------------------------------------------A--SGSADKSV 77 (1081)
T ss_pred ---------------------------------------------------------------------c--cCCCceeE
Confidence 1 34568899
Q ss_pred EEEECCCCcEEEEec-cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEeccc
Q 002778 240 VVKDFVTRAIISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT 318 (882)
Q Consensus 240 ~VWDl~s~~~v~~f~-aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t 318 (882)
.||.-.-. ..++ .|.+.|.||.|+|-...|||++-.+ +-+|.... +.+.+. + .
T Consensus 78 I~W~~klE---G~LkYSH~D~IQCMsFNP~~h~LasCsLsd--FglWS~~q------------------K~V~K~-k--s 131 (1081)
T KOG1538|consen 78 IIWTSKLE---GILKYSHNDAIQCMSFNPITHQLASCSLSD--FGLWSPEQ------------------KSVSKH-K--S 131 (1081)
T ss_pred EEeccccc---ceeeeccCCeeeEeecCchHHHhhhcchhh--ccccChhh------------------hhHHhh-h--h
Confidence 99976432 2333 6999999999999999999999743 67888742 112221 1 2
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCeEEEEE
Q 002778 319 SATIQDICFSHYSQWIAIVSSKGTCHVFV 347 (882)
Q Consensus 319 ~a~I~sLaFSPDg~~LAsgS~DGTVhIWd 347 (882)
.++|.+.+|..||++||.|-.+|||.|=+
T Consensus 132 s~R~~~CsWtnDGqylalG~~nGTIsiRN 160 (1081)
T KOG1538|consen 132 SSRIICCSWTNDGQYLALGMFNGTISIRN 160 (1081)
T ss_pred heeEEEeeecCCCcEEEEeccCceEEeec
Confidence 35799999999999999999999999864
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.1e-05 Score=84.94 Aligned_cols=195 Identities=14% Similarity=0.173 Sum_probs=119.0
Q ss_pred cCCeEEEEECCCCeE-EEEEE------cCCcEEEEEEcC----CEEEEEECCeEEEEECCCCceeEEEec-CCCcccCCC
Q 002778 59 SPTAVRFYSFQSHCY-EHVLR------FRSSVCMVRCSP----RIVAVGLATQIYCFDALTLENKFSVLT-YPVPQLAGQ 126 (882)
Q Consensus 59 sp~tVrlWDlkTG~~-V~tLk------f~s~V~sV~~S~----rlLAV~~d~qI~IWDa~T~e~l~tL~t-~p~p~~~~~ 126 (882)
.++.|.||++..+.. +..+. ++....+=+++| ..|++..+.++++||++|+++...+.. |..
T Consensus 142 ~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq------ 215 (370)
T KOG1007|consen 142 DDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQ------ 215 (370)
T ss_pred ccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcc------
Confidence 568899999988776 55543 223344455665 578888999999999999988777653 211
Q ss_pred CcccccccceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhcccccccccccc
Q 002778 127 GAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQ 206 (882)
Q Consensus 127 ~~~g~~~~~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~ 206 (882)
....+ -|.++.-.
T Consensus 216 -------~vrdl-------DfNpnkq~----------------------------------------------------- 228 (370)
T KOG1007|consen 216 -------RVRDL-------DFNPNKQH----------------------------------------------------- 228 (370)
T ss_pred -------eeeec-------cCCCCceE-----------------------------------------------------
Confidence 01112 22221100
Q ss_pred ccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCC-cEEEEeccCCCCeEEEEECCCC-CEEEEEEcCCCEEEE
Q 002778 207 ELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINI 284 (882)
Q Consensus 207 ~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~-~~v~~f~aH~spIsaLaFSPdG-tlLATAS~dGt~IrV 284 (882)
. ++ +++.||.|+|||...- ..+..+..|...|+++.|+|.- +++.|+|.|- .+.+
T Consensus 229 ------------------~--lv--t~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs-~V~L 285 (370)
T KOG1007|consen 229 ------------------I--LV--TCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDS-AVNL 285 (370)
T ss_pred ------------------E--EE--EcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCc-eeEE
Confidence 0 11 4567899999999754 5788999999999999999964 6778888855 4788
Q ss_pred EecCCCcccCC--CCCCcccc-----CCcccEEEE--EEe-cccCCcEEEEEEccCCCEEEE-EeCCCeEEEEECC
Q 002778 285 FRIMPSCMRSG--SGNHKYDW-----NSSHVHLYK--LHR-GITSATIQDICFSHYSQWIAI-VSSKGTCHVFVLS 349 (882)
Q Consensus 285 Wdi~p~~~~~~--sG~~~~d~-----sss~~~l~~--L~R-G~t~a~I~sLaFSPDg~~LAs-gS~DGTVhIWdI~ 349 (882)
|......+... .+....+. ....+.|.. |.+ ..+...|++++||.-.-|+.+ -|-||-+.|=.+.
T Consensus 286 sca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 286 SCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred EeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 87642100000 00000000 000111111 000 112246999999988888655 5889999886654
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.9e-06 Score=96.19 Aligned_cols=119 Identities=17% Similarity=0.182 Sum_probs=78.8
Q ss_pred ccCCCceEEEEECCCCcEEEE--eccCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEecCCCcc-------cCCCCCCcc
Q 002778 232 DMDNAGIVVVKDFVTRAIISQ--FKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCM-------RSGSGNHKY 301 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~--f~aH~spIsaLaFSPdG-tlLATAS~dGt~IrVWdi~p~~~-------~~~sG~~~~ 301 (882)
++..|.++++||+.+.+++.. +.+|+..|.++||.|+. ..++||+.||. |.|||+.-.-. ....+.+..
T Consensus 117 sasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~-illWD~R~n~~d~~e~~~~~~~~~~n~ 195 (720)
T KOG0321|consen 117 SASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGE-ILLWDCRCNGVDALEEFDNRIYGRHNT 195 (720)
T ss_pred EccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCc-EEEEEEeccchhhHHHHhhhhhccccC
Confidence 346689999999999888766 89999999999999976 47789999875 89999853100 000011111
Q ss_pred ccCCcccEEEEEEecc-cCCcEEE---EEEccCCCEEEEEeC-CCeEEEEECCCC
Q 002778 302 DWNSSHVHLYKLHRGI-TSATIQD---ICFSHYSQWIAIVSS-KGTCHVFVLSPF 351 (882)
Q Consensus 302 d~sss~~~l~~L~RG~-t~a~I~s---LaFSPDg~~LAsgS~-DGTVhIWdI~~~ 351 (882)
....+.......+++. ....|.+ +.|.-|...||+++. |++|+||||...
T Consensus 196 ~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~ 250 (720)
T KOG0321|consen 196 APTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKN 250 (720)
T ss_pred CCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccc
Confidence 0011111111122111 1124666 677788899999988 999999999864
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=9.4e-05 Score=85.09 Aligned_cols=94 Identities=18% Similarity=0.176 Sum_probs=61.9
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecc
Q 002778 238 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI 317 (882)
Q Consensus 238 ~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~ 317 (882)
.|.+||+.+++.. .+..+...+...+|+|||+.|+.++.++...+||.+... .| ...++...
T Consensus 268 ~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~-----~g-----------~~~~lt~~- 329 (429)
T PRK03629 268 NLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNIN-----GG-----------APQRITWE- 329 (429)
T ss_pred EEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECC-----CC-----------CeEEeecC-
Confidence 5889999987654 444455677889999999999888765544677765321 01 11222211
Q ss_pred cCCcEEEEEEccCCCEEEEEeCC-C--eEEEEECCC
Q 002778 318 TSATIQDICFSHYSQWIAIVSSK-G--TCHVFVLSP 350 (882)
Q Consensus 318 t~a~I~sLaFSPDg~~LAsgS~D-G--TVhIWdI~~ 350 (882)
.....+.+|||||++|+..+.+ + .+.+||+..
T Consensus 330 -~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~ 364 (429)
T PRK03629 330 -GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT 364 (429)
T ss_pred -CCCccCEEECCCCCEEEEEEccCCCceEEEEECCC
Confidence 1235678999999999887654 3 466677754
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.2e-06 Score=100.18 Aligned_cols=103 Identities=17% Similarity=0.209 Sum_probs=72.3
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEc
Q 002778 249 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS 328 (882)
Q Consensus 249 ~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFS 328 (882)
.+..+.--+.+|...+|+|||++||+-|.||. +||||... ++|.-+.+-. -+-..|++||
T Consensus 282 Pv~~w~~~~g~in~f~FS~DG~~LA~VSqDGf-LRvF~fdt------------------~eLlg~mkSY-FGGLLCvcWS 341 (636)
T KOG2394|consen 282 PVARWHIGEGSINEFAFSPDGKYLATVSQDGF-LRIFDFDT------------------QELLGVMKSY-FGGLLCVCWS 341 (636)
T ss_pred ccceeEeccccccceeEcCCCceEEEEecCce-EEEeeccH------------------HHHHHHHHhh-ccceEEEEEc
Confidence 44444444568999999999999999999885 89999843 1221110100 0247899999
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCCCccccccccCCCCCCcccC
Q 002778 329 HYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFP 371 (882)
Q Consensus 329 PDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~H~~~~~~~~~sp 371 (882)
|||+|||+|+.|--|.||.+....-...-++|.+=|....+-|
T Consensus 342 PDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 342 PDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred CCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 9999999999999999999986544444467764444444433
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.5e-06 Score=97.62 Aligned_cols=72 Identities=18% Similarity=0.315 Sum_probs=63.0
Q ss_pred CCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecC
Q 002778 212 GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM 288 (882)
Q Consensus 212 gs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~ 288 (882)
+....++++++++.++. .++||.+||+|+.+.+++..++.--+.+.|++|||||+++||++.|+ .+.||.+.
T Consensus 291 g~in~f~FS~DG~~LA~----VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDD-LVtVwSf~ 362 (636)
T KOG2394|consen 291 GSINEFAFSPDGKYLAT----VSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDD-LVTVWSFE 362 (636)
T ss_pred ccccceeEcCCCceEEE----EecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcc-eEEEEEec
Confidence 33455777889999874 58999999999999999989988889999999999999999999976 79999995
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.2e-05 Score=88.26 Aligned_cols=103 Identities=12% Similarity=0.199 Sum_probs=74.3
Q ss_pred ccCCCceEEEEECCCCcEEE--EeccCC-CCeEEEEECCCCCEEEEEEcC---CCEEEEEecCCCcccCCCCCCccccCC
Q 002778 232 DMDNAGIVVVKDFVTRAIIS--QFKAHT-SPISALCFDPSGTLLVTASVY---GNNINIFRIMPSCMRSGSGNHKYDWNS 305 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~--~f~aH~-spIsaLaFSPdGtlLATAS~d---Gt~IrVWdi~p~~~~~~sG~~~~d~ss 305 (882)
+++.||+|++||+++....+ .+.+|. .|..+++.+-.+.+++++... .-.+.+||++...
T Consensus 89 s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~q-------------- 154 (376)
T KOG1188|consen 89 SCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQ-------------- 154 (376)
T ss_pred EeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEecccc--------------
Confidence 35679999999999876544 445666 467777777788999988542 3357899996420
Q ss_pred cccEEEEEEecccCCcEEEEEEccC-CCEEEEEeCCCeEEEEECCCC
Q 002778 306 SHVHLYKLHRGITSATIQDICFSHY-SQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 306 s~~~l~~L~RG~t~a~I~sLaFSPD-g~~LAsgS~DGTVhIWdI~~~ 351 (882)
+.+..+... +...|++|.|.|. -..|++||.||-|.|||+...
T Consensus 155 --q~l~~~~eS-H~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 155 --QLLRQLNES-HNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred --chhhhhhhh-ccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 112223222 3357999999985 479999999999999999754
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.9e-06 Score=64.24 Aligned_cols=39 Identities=26% Similarity=0.629 Sum_probs=35.7
Q ss_pred CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEe
Q 002778 247 RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFR 286 (882)
Q Consensus 247 ~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWd 286 (882)
++++.+|++|..+|.+|+|+|++++|||++.|+ .|+|||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~-~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDG-TIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTS-EEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCC-EEEEEC
Confidence 357889999999999999999999999999976 599997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=4.7e-06 Score=88.94 Aligned_cols=55 Identities=20% Similarity=0.325 Sum_probs=51.4
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEec
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI 287 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi 287 (882)
+++-||.||||.-.+++.++.++-|...|++|||+|+..++|.||.|++ |-+|++
T Consensus 268 TAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~r-ISLWkL 322 (323)
T KOG0322|consen 268 TAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDAR-ISLWKL 322 (323)
T ss_pred ecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCce-EEeeec
Confidence 5678999999999999999999999999999999999999999999765 999986
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.4e-05 Score=89.82 Aligned_cols=236 Identities=16% Similarity=0.084 Sum_probs=131.9
Q ss_pred cCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC--C---EEEE-EECCeEEEEECCCC--ceeEEEecCCCcccCCCCcc
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--R---IVAV-GLATQIYCFDALTL--ENKFSVLTYPVPQLAGQGAV 129 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~--r---lLAV-~~d~qI~IWDa~T~--e~l~tL~t~p~p~~~~~~~~ 129 (882)
+...|.+||-.+-..+.++. |...|..+.+-+ + .+++ +.|++|.+|.++.- .+++++.+|..
T Consensus 32 a~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~--------- 102 (764)
T KOG1063|consen 32 AGPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCK--------- 102 (764)
T ss_pred CCceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcce---------
Confidence 34678899988776666665 888888888653 3 3444 46889999998832 24455544332
Q ss_pred cccccceeeEEcC--cEE--EEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccc
Q 002778 130 GINVGYGPMAVGP--RWL--AYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYC 205 (882)
Q Consensus 130 g~~~~~g~lAlsp--R~L--Ayss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~ 205 (882)
...++.- ..+ +.++..+.+|+... ++--+.+....+. |.+--.|
T Consensus 103 ------~~~cv~a~~~~~~~~~ad~~v~vw~~~~-----------------~e~~~~~~~rf~~---------k~~ipLc 150 (764)
T KOG1063|consen 103 ------ECVCVVARSSVMTCKAADGTVSVWDKQQ-----------------DEVFLLAVLRFEI---------KEAIPLC 150 (764)
T ss_pred ------eEEEEEeeeeEEEeeccCceEEEeecCC-----------------Cceeeehheehhh---------hhHhhHH
Confidence 1222221 111 22445677787410 0000000000000 0000111
Q ss_pred cccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCC--cEEEEeccCCCCeEEEEECCCCC---EEEEEEcCCC
Q 002778 206 QELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR--AIISQFKAHTSPISALCFDPSGT---LLVTASVYGN 280 (882)
Q Consensus 206 ~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~--~~v~~f~aH~spIsaLaFSPdGt---lLATAS~dGt 280 (882)
...++ +. +...++ -|+.+..|.|+--.+. +.+..+.+|++.|..|+|...|. +|||+|. ++
T Consensus 151 L~~~~---------~~--~~~lla--~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQ-D~ 216 (764)
T KOG1063|consen 151 LAALK---------NN--KTFLLA--CGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQ-DR 216 (764)
T ss_pred Hhhhc---------cC--CcEEEE--ecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCC-ce
Confidence 11111 11 111111 3455666777665533 56788999999999999998765 8888888 56
Q ss_pred EEEEEecCCCcccCC-----CCCCccccCCcccEEEE---------EEecccCCcEEEEEEccCCCEEEEEeCCCeEEEE
Q 002778 281 NINIFRIMPSCMRSG-----SGNHKYDWNSSHVHLYK---------LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVF 346 (882)
Q Consensus 281 ~IrVWdi~p~~~~~~-----sG~~~~d~sss~~~l~~---------L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIW 346 (882)
.||||++...-..+. .-+...+ ......+.+ +.-||.+ .|+++-|+|++..|.++|.|.|+.||
T Consensus 217 yIRiW~i~~~~~~~~~~~e~~~t~~~~-~~~f~~l~~i~~~is~eall~GHeD-WV~sv~W~p~~~~LLSASaDksmiiW 294 (764)
T KOG1063|consen 217 YIRIWRIVLGDDEDSNEREDSLTTLSN-LPVFMILEEIQYRISFEALLMGHED-WVYSVWWHPEGLDLLSASADKSMIIW 294 (764)
T ss_pred EEEEEEEEecCCccccccccccccccC-CceeeeeeeEEEEEehhhhhcCccc-ceEEEEEccchhhheecccCcceEEE
Confidence 799999865210000 0000000 001112211 2237664 79999999999999999999999999
Q ss_pred ECCCC
Q 002778 347 VLSPF 351 (882)
Q Consensus 347 dI~~~ 351 (882)
.-...
T Consensus 295 ~pd~~ 299 (764)
T KOG1063|consen 295 KPDEN 299 (764)
T ss_pred ecCCc
Confidence 76544
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00037 Score=77.84 Aligned_cols=85 Identities=19% Similarity=0.353 Sum_probs=59.0
Q ss_pred CeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEe
Q 002778 259 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS 338 (882)
Q Consensus 259 pIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS 338 (882)
....|+++|||++|..+......|-+|++.+. .| ....+..+..+ ...-+.++|+|||+||+++.
T Consensus 246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~-----~g--------~l~~~~~~~~~--G~~Pr~~~~s~~g~~l~Va~ 310 (345)
T PF10282_consen 246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPA-----TG--------TLTLVQTVPTG--GKFPRHFAFSPDGRYLYVAN 310 (345)
T ss_dssp SEEEEEE-TTSSEEEEEECTTTEEEEEEECTT-----TT--------TEEEEEEEEES--SSSEEEEEE-TTSSEEEEEE
T ss_pred CceeEEEecCCCEEEEEeccCCEEEEEEEecC-----CC--------ceEEEEEEeCC--CCCccEEEEeCCCCEEEEEe
Confidence 57889999999999888776677999999431 12 11223333221 12368999999999999887
Q ss_pred -CCCeEEEEECCCCCCccccc
Q 002778 339 -SKGTCHVFVLSPFGGDSGFQ 358 (882)
Q Consensus 339 -~DGTVhIWdI~~~gg~~~l~ 358 (882)
.+++|.+|+++...|.....
T Consensus 311 ~~s~~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 311 QDSNTVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp TTTTEEEEEEEETTTTEEEEE
T ss_pred cCCCeEEEEEEeCCCCcEEEe
Confidence 67799999998766655443
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=6e-07 Score=106.47 Aligned_cols=94 Identities=23% Similarity=0.386 Sum_probs=81.7
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEE
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~ 311 (882)
+++.|..|+||...+..+++..++|.+.|+.++.+...+++|+||. +.+|+||.+.+ | ..+.
T Consensus 207 tgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~-D~vIrvWrl~~-------~----------~pvs 268 (1113)
T KOG0644|consen 207 TGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASN-DKVIRVWRLPD-------G----------APVS 268 (1113)
T ss_pred ecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhccc-CceEEEEecCC-------C----------chHH
Confidence 6788999999999999999999999999999999999999999998 56899999954 3 2333
Q ss_pred EEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECC
Q 002778 312 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 349 (882)
Q Consensus 312 ~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~ 349 (882)
. .||++.+ |++|+|||-- +++.|||+++||..
T Consensus 269 v-Lrghtga-vtaiafsP~~----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 269 V-LRGHTGA-VTAIAFSPRA----SSSDDGTCRIWDAR 300 (1113)
T ss_pred H-Hhccccc-eeeeccCccc----cCCCCCceEecccc
Confidence 3 3788865 9999999954 88999999999976
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.2e-05 Score=84.15 Aligned_cols=119 Identities=16% Similarity=0.199 Sum_probs=83.6
Q ss_pred CCCccccccccccccCCCceEEEEECCCC----cEEEEeccCCCCeEEEEECCC--CCEEEEEEcCCCEEEEEecCCCcc
Q 002778 219 PNSVWKVGRHAGADMDNAGIVVVKDFVTR----AIISQFKAHTSPISALCFDPS--GTLLVTASVYGNNINIFRIMPSCM 292 (882)
Q Consensus 219 ~ss~~k~~~la~~tgs~dG~V~VWDl~s~----~~v~~f~aH~spIsaLaFSPd--GtlLATAS~dGt~IrVWdi~p~~~ 292 (882)
++..++..+ +++.|++|+|||..+. .+-...++|.+.|..+.|-+- |+.+|++|.|++ +.||.-.+. .
T Consensus 21 ~D~~GRRmA----tCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt-v~iWEE~~~-~ 94 (361)
T KOG2445|consen 21 FDFYGRRMA----TCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT-VSIWEEQEK-S 94 (361)
T ss_pred ecccCceee----eccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCc-eeeeeeccc-c
Confidence 344445443 5788999999997543 467889999999999999663 899999999776 899986421 0
Q ss_pred cCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccC--CCEEEEEeCCCeEEEEECCCCC
Q 002778 293 RSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY--SQWIAIVSSKGTCHVFVLSPFG 352 (882)
Q Consensus 293 ~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPD--g~~LAsgS~DGTVhIWdI~~~g 352 (882)
....| -.| .+..+|. .....|++|.|.|- |-.||+++.||++|||..-...
T Consensus 95 ~~~~~---~~W----v~~ttl~--DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~ 147 (361)
T KOG2445|consen 95 EEAHG---RRW----VRRTTLV--DSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPM 147 (361)
T ss_pred ccccc---cee----EEEEEee--cCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcc
Confidence 00001 011 1222222 22347999999985 7889999999999999875443
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00054 Score=75.11 Aligned_cols=116 Identities=17% Similarity=0.235 Sum_probs=77.7
Q ss_pred ccCCCce-EEEEECCCCcEEEEeccC--CCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcc-cC--CCCCCccc-c-
Q 002778 232 DMDNAGI-VVVKDFVTRAIISQFKAH--TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM-RS--GSGNHKYD-W- 303 (882)
Q Consensus 232 tgs~dG~-V~VWDl~s~~~v~~f~aH--~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~-~~--~sG~~~~d-~- 303 (882)
+++..|+ |||||..+|+.+..|+-- ...|.+|+|||++.+||.+|.+|| ++||.+.+... .. .+-. ... |
T Consensus 198 TaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgT-lHiF~l~~~~~~~~~~SSl~-~~~~~l 275 (346)
T KOG2111|consen 198 TASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGT-LHIFSLRDTENTEDESSSLS-FKRLVL 275 (346)
T ss_pred EeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCe-EEEEEeecCCCCcccccccc-cccccc
Confidence 5566776 699999999999999843 346999999999999999999887 89999976321 00 0000 000 0
Q ss_pred ---CCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 304 ---NSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 304 ---sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
-++.+-+.+++- ......-++|-.+.+-+++...||+-+=+.+.+.
T Consensus 276 pky~~S~wS~~~f~l--~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~~~ 324 (346)
T KOG2111|consen 276 PKYFSSEWSFAKFQL--PQGTQCIIAFGSETNTVIAICADGSYYKFKFDPK 324 (346)
T ss_pred chhcccceeEEEEEc--cCCCcEEEEecCCCCeEEEEEeCCcEEEEEeccc
Confidence 001122233321 1224556789888778888888999887777665
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.9e-05 Score=93.47 Aligned_cols=105 Identities=14% Similarity=0.188 Sum_probs=73.7
Q ss_pred ccCCCceEEEEECCCCc--EEEEeccCC--C-CeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCc
Q 002778 232 DMDNAGIVVVKDFVTRA--IISQFKAHT--S-PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS 306 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~--~v~~f~aH~--s-pIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss 306 (882)
+|+++|.|++||+.... ..-++..|. + .+++|..++...++|+|+. ..|+||++. |.....
T Consensus 1274 Sgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~--q~ikIy~~~--------G~~l~~---- 1339 (1387)
T KOG1517|consen 1274 SGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA--QLIKIYSLS--------GEQLNI---- 1339 (1387)
T ss_pred eeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc--ceEEEEecC--------hhhhcc----
Confidence 46789999999998732 223344554 3 5999999999999999997 469999985 310000
Q ss_pred ccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 307 HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 307 ~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
.+-+...-|.....+.+++|.|.--.||+|+.|.+|-||...+.
T Consensus 1340 -~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1340 -IKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred -cccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 00011111222235789999999999999999999999987654
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00029 Score=81.65 Aligned_cols=96 Identities=20% Similarity=0.287 Sum_probs=59.2
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEE-ec
Q 002778 238 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-RG 316 (882)
Q Consensus 238 ~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~-RG 316 (882)
.|.++|+.+++. ..+..|.......+|+|||+.|+..+..+....||.+... .| ...++. .+
T Consensus 287 ~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~-----~g-----------~~~~Lt~~g 349 (448)
T PRK04792 287 EIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLA-----SG-----------KVSRLTFEG 349 (448)
T ss_pred EEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC-----CC-----------CEEEEecCC
Confidence 477888887754 4555565566778999999988877654333455544221 02 122221 12
Q ss_pred ccCCcEEEEEEccCCCEEEEEeC-CCeEEEEECCCCCC
Q 002778 317 ITSATIQDICFSHYSQWIAIVSS-KGTCHVFVLSPFGG 353 (882)
Q Consensus 317 ~t~a~I~sLaFSPDg~~LAsgS~-DGTVhIWdI~~~gg 353 (882)
. .....+|||||++|+..+. ++..+||-++..++
T Consensus 350 ~---~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g 384 (448)
T PRK04792 350 E---QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETG 384 (448)
T ss_pred C---CCcCeeECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 1 2345799999999988765 45667765554333
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0002 Score=76.11 Aligned_cols=64 Identities=14% Similarity=0.126 Sum_probs=54.5
Q ss_pred CCeEEEEECCCCeEEEEEE-cCCcEEEEEE---cCCEEEEEECCeEEEEECCCCceeEEEecCCCccc
Q 002778 60 PTAVRFYSFQSHCYEHVLR-FRSSVCMVRC---SPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQL 123 (882)
Q Consensus 60 p~tVrlWDlkTG~~V~tLk-f~s~V~sV~~---S~rlLAV~~d~qI~IWDa~T~e~l~tL~t~p~p~~ 123 (882)
+..+.-||+++|+..++++ |.+-|.+|.. ++++|..+-|++++|||.+|.++..++.-+.+|..
T Consensus 135 D~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~ 202 (325)
T KOG0649|consen 135 DGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNL 202 (325)
T ss_pred CeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhh
Confidence 5788889999999999998 8888988877 35777777889999999999999999987766543
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00022 Score=85.88 Aligned_cols=106 Identities=19% Similarity=0.264 Sum_probs=81.6
Q ss_pred ccCCCceEEEEECCC--C--cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcc
Q 002778 232 DMDNAGIVVVKDFVT--R--AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH 307 (882)
Q Consensus 232 tgs~dG~V~VWDl~s--~--~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~ 307 (882)
+++.||.|.||.--. + .....|.=|..+|.+|+|++||.+|.||+..| .+-+|.+.+ + ..
T Consensus 222 a~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~-VLv~Wq~~T-------~--------~k 285 (792)
T KOG1963|consen 222 AGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREG-VLVLWQLET-------G--------KK 285 (792)
T ss_pred EeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccce-EEEEEeecC-------C--------Cc
Confidence 568899999997433 2 23466778999999999999999999999976 678999964 2 11
Q ss_pred cEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccccc
Q 002778 308 VHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQ 358 (882)
Q Consensus 308 ~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~ 358 (882)
+.|-+| .++|..+.+|||+.+.+....|+.||+-.........++.
T Consensus 286 qfLPRL-----gs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIs 331 (792)
T KOG1963|consen 286 QFLPRL-----GSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTIS 331 (792)
T ss_pred cccccc-----CCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhcc
Confidence 222222 3689999999999999999999999998876655444443
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00033 Score=78.84 Aligned_cols=85 Identities=14% Similarity=0.176 Sum_probs=54.5
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC--EEEEEecCCCcccCCCCCCccccCCcccEEEEEEe
Q 002778 238 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN--NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 315 (882)
Q Consensus 238 ~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt--~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~R 315 (882)
.|.++|+.+++. ..+..+...+..++|+|+|++|+.++.++. .|.+||+.. + ....+..
T Consensus 303 ~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~-------~-----------~~~~l~~ 363 (417)
T TIGR02800 303 QIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG-------G-----------GERVLTD 363 (417)
T ss_pred eEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC-------C-----------CeEEccC
Confidence 467777776653 344445566778899999999998876542 366667642 1 1222221
Q ss_pred cccCCcEEEEEEccCCCEEEEEeCCCeEE
Q 002778 316 GITSATIQDICFSHYSQWIAIVSSKGTCH 344 (882)
Q Consensus 316 G~t~a~I~sLaFSPDg~~LAsgS~DGTVh 344 (882)
+ ......+|+|||++|+..+.++...
T Consensus 364 ~---~~~~~p~~spdg~~l~~~~~~~~~~ 389 (417)
T TIGR02800 364 T---GLDESPSFAPNGRMILYATTRGGRG 389 (417)
T ss_pred C---CCCCCceECCCCCEEEEEEeCCCcE
Confidence 1 1234578999999999888766433
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00023 Score=87.15 Aligned_cols=101 Identities=20% Similarity=0.211 Sum_probs=75.7
Q ss_pred cCCCceEEEEECCCC---cEEEEeccCCCC--eEEEEECCCCCE-EEEEEcCCCEEEEEecCCCcccCCCCCCccccCCc
Q 002778 233 MDNAGIVVVKDFVTR---AIISQFKAHTSP--ISALCFDPSGTL-LVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS 306 (882)
Q Consensus 233 gs~dG~V~VWDl~s~---~~v~~f~aH~sp--IsaLaFSPdGtl-LATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss 306 (882)
|-.||.|++||...- ..+...+.|+.. |..+.|.+.|-- |++||.+|. |++||+...+..+.
T Consensus 1227 GfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~-I~~~DlR~~~~e~~----------- 1294 (1387)
T KOG1517|consen 1227 GFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD-IQLLDLRMSSKETF----------- 1294 (1387)
T ss_pred eecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCe-EEEEecccCccccc-----------
Confidence 567999999998753 357788899988 999999998865 999999886 99999975210000
Q ss_pred ccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECC
Q 002778 307 HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 349 (882)
Q Consensus 307 ~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~ 349 (882)
....+...-|. ..+++...++...||+|+. +.|.||++.
T Consensus 1295 ~~iv~~~~yGs---~lTal~VH~hapiiAsGs~-q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1295 LTIVAHWEYGS---ALTALTVHEHAPIIASGSA-QLIKIYSLS 1333 (1387)
T ss_pred ceeeeccccCc---cceeeeeccCCCeeeecCc-ceEEEEecC
Confidence 01112111131 3788999999999999999 999999986
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=5.7e-05 Score=83.67 Aligned_cols=77 Identities=19% Similarity=0.348 Sum_probs=61.9
Q ss_pred ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCE
Q 002778 254 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW 333 (882)
Q Consensus 254 ~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~ 333 (882)
.+| -+|++|++++||+.|+|||.++..|+|||... |+ ...+. .+|. ..+.-|.||||+.|
T Consensus 193 pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdt-------g~--------~~pL~--~~gl--gg~slLkwSPdgd~ 252 (445)
T KOG2139|consen 193 PGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDT-------GQ--------KIPLI--PKGL--GGFSLLKWSPDGDV 252 (445)
T ss_pred CCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCC-------CC--------ccccc--ccCC--CceeeEEEcCCCCE
Confidence 456 69999999999999999999888999999864 21 12333 2332 24788999999999
Q ss_pred EEEEeCCCeEEEEECCC
Q 002778 334 IAIVSSKGTCHVFVLSP 350 (882)
Q Consensus 334 LAsgS~DGTVhIWdI~~ 350 (882)
|.+++-|++.+||..+.
T Consensus 253 lfaAt~davfrlw~e~q 269 (445)
T KOG2139|consen 253 LFAATCDAVFRLWQENQ 269 (445)
T ss_pred EEEecccceeeeehhcc
Confidence 99999999999997653
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00011 Score=86.05 Aligned_cols=242 Identities=16% Similarity=0.139 Sum_probs=133.7
Q ss_pred ccCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC--CEEEEEE-CCeEEEEECCCCceeEEEe-cCCCcccCCCCccccc
Q 002778 58 NSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVL-TYPVPQLAGQGAVGIN 132 (882)
Q Consensus 58 ~sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~--rlLAV~~-d~qI~IWDa~T~e~l~tL~-t~p~p~~~~~~~~g~~ 132 (882)
..+..+.+||...|....+|+ |.+.|+.|++++ +++|+|. |..|.+|.-. ..-+|+ .|..
T Consensus 30 AAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k---lEG~LkYSH~D------------ 94 (1081)
T KOG1538|consen 30 AAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK---LEGILKYSHND------------ 94 (1081)
T ss_pred ecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccc---ccceeeeccCC------------
Confidence 467889999999999999999 999999999975 7888875 5679999743 222222 1222
Q ss_pred ccceeeEEcC--cEEEEeC-CCeEeccCCCCCCccCCC--CCC-CCCcCCCCCccEEEeeccchhhhhccccccccccc-
Q 002778 133 VGYGPMAVGP--RWLAYAS-NTLLLSNSGRLSPQNLTP--SGV-SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYC- 205 (882)
Q Consensus 133 ~~~g~lAlsp--R~LAyss-~~v~lwdtG~vs~q~lt~--~~v-s~s~SP~~GslVA~~A~essk~la~GliktLs~~~- 205 (882)
....|.|.| ..||..+ +..-+|....-..+.... ... -.++ .+|...+....+....+ ..+.....
T Consensus 95 -~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWt--nDGqylalG~~nGTIsi----RNk~gEek~ 167 (1081)
T KOG1538|consen 95 -AIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWT--NDGQYLALGMFNGTISI----RNKNGEEKV 167 (1081)
T ss_pred -eeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeec--CCCcEEEEeccCceEEe----ecCCCCcce
Confidence 135677777 4555433 344566532111110000 000 0111 12333322221111000 00000000
Q ss_pred cccCCCCCCCCc---cCCCccccccccccccCCCceEEEEECC--------CCcEEEEeccCCCCeEEEEECCCCCEEEE
Q 002778 206 QELLPDGSSSPV---SPNSVWKVGRHAGADMDNAGIVVVKDFV--------TRAIISQFKAHTSPISALCFDPSGTLLVT 274 (882)
Q Consensus 206 ~~l~pdgs~s~~---S~ss~~k~~~la~~tgs~dG~V~VWDl~--------s~~~v~~f~aH~spIsaLaFSPdGtlLAT 274 (882)
.--.|+|.++++ ..+|... -+.+-++-|-|-. +|+.+..=++-.-.-.|+.+-|+|.++..
T Consensus 168 ~I~Rpgg~Nspiwsi~~~p~sg--------~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~Li 239 (1081)
T KOG1538|consen 168 KIERPGGSNSPIWSICWNPSSG--------EGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILL 239 (1081)
T ss_pred EEeCCCCCCCCceEEEecCCCC--------CCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEE
Confidence 001245554442 1222111 1223344444432 23333322222233357888899999999
Q ss_pred EEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 002778 275 ASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 350 (882)
Q Consensus 275 AS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~ 350 (882)
|+.++. +++|--. | ..+-++ |.....||+++..|+|++++.|+-|||+--|++..
T Consensus 240 GGsdk~-L~~fTR~--------G----------vrLGTv--g~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 240 GGSDKQ-LSLFTRD--------G----------VRLGTV--GEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred ccCCCc-eEEEeec--------C----------eEEeec--cccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 988665 7888653 3 455554 33445899999999999999999999999999853
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00081 Score=77.98 Aligned_cols=51 Identities=24% Similarity=0.243 Sum_probs=34.5
Q ss_pred CeEEEEECCCCeEEEEEEcCCcEEEEEEcC--CEEEEEE--CC--eEEEEECCCCce
Q 002778 61 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL--AT--QIYCFDALTLEN 111 (882)
Q Consensus 61 ~tVrlWDlkTG~~V~tLkf~s~V~sV~~S~--rlLAV~~--d~--qI~IWDa~T~e~ 111 (882)
..|.+||+.+|+......++....+.++++ +.|+.+. ++ +|++||+.+++.
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~ 298 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL 298 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe
Confidence 368899999987644334555556778876 5566543 23 499999988764
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.97 E-value=7.7e-05 Score=83.54 Aligned_cols=82 Identities=21% Similarity=0.368 Sum_probs=65.4
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEc
Q 002778 249 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS 328 (882)
Q Consensus 249 ~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFS 328 (882)
..+.+++|...|..|+|+|++.+|++++.| ..+++||+.. | .+....-++ ..-++.++|-
T Consensus 115 v~k~lr~h~~diydL~Ws~d~~~l~s~s~d-ns~~l~Dv~~-------G-----------~l~~~~~dh-~~yvqgvawD 174 (434)
T KOG1009|consen 115 VKKVLRGHRDDIYDLAWSPDSNFLVSGSVD-NSVRLWDVHA-------G-----------QLLAILDDH-EHYVQGVAWD 174 (434)
T ss_pred EEEEecccccchhhhhccCCCceeeeeecc-ceEEEEEecc-------c-----------eeEeecccc-ccccceeecc
Confidence 456778899999999999999999999995 5699999964 3 333332233 3469999999
Q ss_pred cCCCEEEEEeCCCeEEEEECCC
Q 002778 329 HYSQWIAIVSSKGTCHVFVLSP 350 (882)
Q Consensus 329 PDg~~LAsgS~DGTVhIWdI~~ 350 (882)
|-++++++=|.|...+++.+..
T Consensus 175 pl~qyv~s~s~dr~~~~~~~~~ 196 (434)
T KOG1009|consen 175 PLNQYVASKSSDRHPEGFSAKL 196 (434)
T ss_pred hhhhhhhhhccCcccceeeeee
Confidence 9999999999998777777754
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0016 Score=74.04 Aligned_cols=178 Identities=14% Similarity=0.092 Sum_probs=110.8
Q ss_pred CCeEEEEECCCCeEEEEEEcCCcEE-EEEEcC--CEEEEEE-CCeEEEEECCCCceeEEEecCCCcccCCCCcccccccc
Q 002778 60 PTAVRFYSFQSHCYEHVLRFRSSVC-MVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGY 135 (882)
Q Consensus 60 p~tVrlWDlkTG~~V~tLkf~s~V~-sV~~S~--rlLAV~~-d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~ 135 (882)
.+.|.|.|..+++.+.++.....+. .+.+++ +++.|+. ++.|.++|+.+++.+.++.....|
T Consensus 15 ~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~-------------- 80 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNP-------------- 80 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEE--------------
T ss_pred CCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCc--------------
Confidence 5789999999999999998655554 466776 6666654 778999999999999888643221
Q ss_pred eeeEEcC--cEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCC
Q 002778 136 GPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS 213 (882)
Q Consensus 136 g~lAlsp--R~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs 213 (882)
..+++++ ++|+.
T Consensus 81 ~~i~~s~DG~~~~v------------------------------------------------------------------ 94 (369)
T PF02239_consen 81 RGIAVSPDGKYVYV------------------------------------------------------------------ 94 (369)
T ss_dssp EEEEE--TTTEEEE------------------------------------------------------------------
T ss_pred ceEEEcCCCCEEEE------------------------------------------------------------------
Confidence 1233322 22210
Q ss_pred CCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccC-------CCCeEEEEECCCCCEEEEEEcCCCEEEEEe
Q 002778 214 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH-------TSPISALCFDPSGTLLVTASVYGNNINIFR 286 (882)
Q Consensus 214 ~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH-------~spIsaLaFSPdGtlLATAS~dGt~IrVWd 286 (882)
....++.|.|+|..+.+.++++... ...+.+|..+|....++.+-.+...|-+-|
T Consensus 95 ------------------~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd 156 (369)
T PF02239_consen 95 ------------------ANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVD 156 (369)
T ss_dssp ------------------EEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEE
T ss_pred ------------------EecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEE
Confidence 0123578999999999999888654 346789999999997777766555455556
Q ss_pred cCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEE-eCCCeEEEEECCCCCC
Q 002778 287 IMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV-SSKGTCHVFVLSPFGG 353 (882)
Q Consensus 287 i~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsg-S~DGTVhIWdI~~~gg 353 (882)
..+. .......+..| ....+..|+||++|+.++ ..+..+-++|..+.+.
T Consensus 157 y~d~---------------~~~~~~~i~~g---~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~ 206 (369)
T PF02239_consen 157 YSDP---------------KNLKVTTIKVG---RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL 206 (369)
T ss_dssp TTTS---------------SCEEEEEEE-----TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE
T ss_pred eccc---------------cccceeeeccc---ccccccccCcccceeeecccccceeEEEeeccceE
Confidence 5321 00122333323 247899999999987664 5677899999876543
|
... |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00094 Score=76.26 Aligned_cols=93 Identities=17% Similarity=0.175 Sum_probs=58.1
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC--EEEEEecCCCcccCCCCCCccccCCcccEEEEEE
Q 002778 237 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN--NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 314 (882)
Q Consensus 237 G~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt--~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~ 314 (882)
..|.+||+.+++. ..+..+........|+|||+.|+..+..+. .|.++++.. | ....+ .+
T Consensus 267 ~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~-------g--------~~~~l-t~- 328 (430)
T PRK00178 267 PEIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG-------G--------RAERV-TF- 328 (430)
T ss_pred ceEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC-------C--------CEEEe-ec-
Confidence 4688899998764 445556666667899999998877665432 344455532 2 01111 11
Q ss_pred ecccCCcEEEEEEccCCCEEEEEeCC-C--eEEEEECCC
Q 002778 315 RGITSATIQDICFSHYSQWIAIVSSK-G--TCHVFVLSP 350 (882)
Q Consensus 315 RG~t~a~I~sLaFSPDg~~LAsgS~D-G--TVhIWdI~~ 350 (882)
.+ ......+|||||++|+..+.+ + .+.+||+..
T Consensus 329 ~~---~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t 364 (430)
T PRK00178 329 VG---NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQR 364 (430)
T ss_pred CC---CCccceEECCCCCEEEEEEccCCceEEEEEECCC
Confidence 12 123457899999999988754 3 366667654
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00092 Score=77.19 Aligned_cols=77 Identities=21% Similarity=0.128 Sum_probs=47.4
Q ss_pred CeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEe
Q 002778 259 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS 338 (882)
Q Consensus 259 pIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS 338 (882)
.....+|+|||+.||..+..+...+||.+... +.+ .....+..+ ...+...+|||||++|+..+
T Consensus 282 ~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~----~~g----------~~~~~lt~~--~~~~~~p~wSPDG~~Laf~~ 345 (428)
T PRK01029 282 TQGNPSFSPDGTRLVFVSNKDGRPRIYIMQID----PEG----------QSPRLLTKK--YRNSSCPAWSPDGKKIAFCS 345 (428)
T ss_pred CcCCeEECCCCCEEEEEECCCCCceEEEEECc----ccc----------cceEEeccC--CCCccceeECCCCCEEEEEE
Confidence 34567999999988877743333567765210 001 012222111 12467899999999999876
Q ss_pred CC---CeEEEEECCCC
Q 002778 339 SK---GTCHVFVLSPF 351 (882)
Q Consensus 339 ~D---GTVhIWdI~~~ 351 (882)
.+ ..|++||+...
T Consensus 346 ~~~g~~~I~v~dl~~g 361 (428)
T PRK01029 346 VIKGVRQICVYDLATG 361 (428)
T ss_pred cCCCCcEEEEEECCCC
Confidence 54 35888888643
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.2e-05 Score=90.27 Aligned_cols=83 Identities=19% Similarity=0.294 Sum_probs=70.4
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEc
Q 002778 249 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS 328 (882)
Q Consensus 249 ~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFS 328 (882)
..+.|.+|++-|++|+|+.+|.+||+||.| +.+.|||.-. ++.+..+..||+ +.|.++.|=
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD-~r~ivWd~~~-----------------~KllhsI~TgHt-aNIFsvKFv 102 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDD-TRLIVWDPFE-----------------YKLLHSISTGHT-ANIFSVKFV 102 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCc-ceEEeecchh-----------------cceeeeeecccc-cceeEEeee
Confidence 346788999999999999999999999984 5588999732 256777778877 579999999
Q ss_pred cC--CCEEEEEeCCCeEEEEECCC
Q 002778 329 HY--SQWIAIVSSKGTCHVFVLSP 350 (882)
Q Consensus 329 PD--g~~LAsgS~DGTVhIWdI~~ 350 (882)
|. .+.|++|..|..|||||++.
T Consensus 103 P~tnnriv~sgAgDk~i~lfdl~~ 126 (758)
T KOG1310|consen 103 PYTNNRIVLSGAGDKLIKLFDLDS 126 (758)
T ss_pred ccCCCeEEEeccCcceEEEEeccc
Confidence 85 57899999999999999985
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=3.9e-05 Score=88.07 Aligned_cols=78 Identities=17% Similarity=0.119 Sum_probs=61.3
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEE
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~ 311 (882)
+|+.|-..+|||.. |+.+-.-.+|..||++++|+|+ ++.|.+|. ++.|+ .- |
T Consensus 203 sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~--nt~R~-~~-p---------------------- 254 (737)
T KOG1524|consen 203 SGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSY--NTARF-SS-P---------------------- 254 (737)
T ss_pred ecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeee--eeeee-cC-C----------------------
Confidence 67889999999986 6677777899999999999999 88887775 23441 11 1
Q ss_pred EEEecccCCcEEEEEEccCCCEEEEEeCCCeE
Q 002778 312 KLHRGITSATIQDICFSHYSQWIAIVSSKGTC 343 (882)
Q Consensus 312 ~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTV 343 (882)
....|..|+||+||.-++.|+..|-+
T Consensus 255 ------~~GSifnlsWS~DGTQ~a~gt~~G~v 280 (737)
T KOG1524|consen 255 ------RVGSIFNLSWSADGTQATCGTSTGQL 280 (737)
T ss_pred ------CccceEEEEEcCCCceeeccccCceE
Confidence 11358999999999999999988864
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00019 Score=87.75 Aligned_cols=106 Identities=19% Similarity=0.158 Sum_probs=78.9
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEE
Q 002778 233 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 312 (882)
Q Consensus 233 gs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~ 312 (882)
|..-|.|.+|+...-+.-..+.+|.+.|-++.|+-||+++||+|.| +.||+|++.+.. .+--
T Consensus 151 gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdD-RsiRlW~i~s~~-----------------~~~~ 212 (967)
T KOG0974|consen 151 GSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDD-RSIRLWPIDSRE-----------------VLGC 212 (967)
T ss_pred ccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecC-cceeeeeccccc-----------------ccCc
Confidence 4456789999987433334689999999999999999999999985 569999997521 1110
Q ss_pred EEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccccccc
Q 002778 313 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTL 360 (882)
Q Consensus 313 L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~H 360 (882)
.-.|| .++|+.++|.|. .|++++.|-|+++|+.+-. ....+..|
T Consensus 213 ~~fgH-saRvw~~~~~~n--~i~t~gedctcrvW~~~~~-~l~~y~~h 256 (967)
T KOG0974|consen 213 TGFGH-SARVWACCFLPN--RIITVGEDCTCRVWGVNGT-QLEVYDEH 256 (967)
T ss_pred ccccc-cceeEEEEeccc--eeEEeccceEEEEEecccc-eehhhhhh
Confidence 11254 478999999998 9999999999999966432 22244455
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00016 Score=88.39 Aligned_cols=100 Identities=14% Similarity=0.148 Sum_probs=80.4
Q ss_pred cCCCceEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEE
Q 002778 233 MDNAGIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 233 gs~dG~V~VWDl~s~~~v~-~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~ 311 (882)
.+.|.++++|++.+.+.+. +.-+|+..|+.++|.|+ +|+|++.|- +.|+|+.. + ..+.
T Consensus 193 ~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedc-tcrvW~~~--------~----------~~l~ 251 (967)
T KOG0974|consen 193 VSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDC-TCRVWGVN--------G----------TQLE 251 (967)
T ss_pred EecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccce-EEEEEecc--------c----------ceeh
Confidence 4678899999999988765 66789999999999999 999999965 58999874 2 1222
Q ss_pred EEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCc
Q 002778 312 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD 354 (882)
Q Consensus 312 ~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~ 354 (882)
+ .+++-...|+.++-.++.-+++++..|+++++|++...+..
T Consensus 252 ~-y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~e 293 (967)
T KOG0974|consen 252 V-YDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGLE 293 (967)
T ss_pred h-hhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccccc
Confidence 2 23444456999999999999999999999999999765543
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00012 Score=82.92 Aligned_cols=104 Identities=19% Similarity=0.306 Sum_probs=75.9
Q ss_pred CCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEE
Q 002778 234 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 313 (882)
Q Consensus 234 s~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L 313 (882)
..+|.|.|.|..+.+.+..|.....+-..++|+|||++|..++.+| .|.++|+.. + +.+.++
T Consensus 13 ~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg-~vsviD~~~-------~----------~~v~~i 74 (369)
T PF02239_consen 13 RGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDG-TVSVIDLAT-------G----------KVVATI 74 (369)
T ss_dssp GGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTS-EEEEEETTS-------S----------SEEEEE
T ss_pred cCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCC-eEEEEECCc-------c----------cEEEEE
Confidence 3478999999999999999987655545688999999999999877 589999964 2 466777
Q ss_pred EecccCCcEEEEEEccCCCEEEEEe-CCCeEEEEECCCCCCccccc
Q 002778 314 HRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFGGDSGFQ 358 (882)
Q Consensus 314 ~RG~t~a~I~sLaFSPDg~~LAsgS-~DGTVhIWdI~~~gg~~~l~ 358 (882)
+-|. .-.++++|+||+||+++. ..+++.|+|..+..-...+.
T Consensus 75 ~~G~---~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~ 117 (369)
T PF02239_consen 75 KVGG---NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIP 117 (369)
T ss_dssp E-SS---EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE
T ss_pred ecCC---CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecc
Confidence 6564 358899999999999886 68999999998765544443
|
... |
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00056 Score=79.38 Aligned_cols=129 Identities=22% Similarity=0.260 Sum_probs=90.0
Q ss_pred CCeEEEEECCCCeEEEEEEcCCcEEEEEEcC--CEEEEEE---CCeEEEEECCCCceeEEEecCCCcccCCCCccccccc
Q 002778 60 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL---ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 134 (882)
Q Consensus 60 p~tVrlWDlkTG~~V~tLkf~s~V~sV~~S~--rlLAV~~---d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~ 134 (882)
-+++.++++...+++-.|.-.++|++|.+++ +-.+|+. -..+-|||++ +..++.+.+.|.
T Consensus 250 Eq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~egpR-------------- 314 (566)
T KOG2315|consen 250 EQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPEGPR-------------- 314 (566)
T ss_pred cceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCCCCc--------------
Confidence 4789999998666776677789999999986 4466654 3579999986 355555533221
Q ss_pred ceeeEEcC--cEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCC
Q 002778 135 YGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG 212 (882)
Q Consensus 135 ~g~lAlsp--R~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdg 212 (882)
+.+-++| ++|+.++
T Consensus 315 -N~~~fnp~g~ii~lAG--------------------------------------------------------------- 330 (566)
T KOG2315|consen 315 -NTAFFNPHGNIILLAG--------------------------------------------------------------- 330 (566)
T ss_pred -cceEECCCCCEEEEee---------------------------------------------------------------
Confidence 2333333 2222211
Q ss_pred CCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC-----CCEEEEEec
Q 002778 213 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY-----GNNINIFRI 287 (882)
Q Consensus 213 s~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~d-----Gt~IrVWdi 287 (882)
-|.-.|.|.|||+.+.+.+..+.+-... -..|+|||.++.||..- ++-|+||+.
T Consensus 331 -------------------FGNL~G~mEvwDv~n~K~i~~~~a~~tt--~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 331 -------------------FGNLPGDMEVWDVPNRKLIAKFKAANTT--VFEWSPDGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred -------------------cCCCCCceEEEeccchhhccccccCCce--EEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence 1234688999999999999999886554 47899999999998763 445899998
Q ss_pred C
Q 002778 288 M 288 (882)
Q Consensus 288 ~ 288 (882)
.
T Consensus 390 t 390 (566)
T KOG2315|consen 390 T 390 (566)
T ss_pred c
Confidence 3
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0019 Score=74.57 Aligned_cols=81 Identities=14% Similarity=0.195 Sum_probs=51.7
Q ss_pred EEEeccCCCCeEEEEECCCCCEEEEEEcCC--CEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEE
Q 002778 250 ISQFKAHTSPISALCFDPSGTLLVTASVYG--NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF 327 (882)
Q Consensus 250 v~~f~aH~spIsaLaFSPdGtlLATAS~dG--t~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaF 327 (882)
...+..+...+...+|||||++||..+.++ ..|.+||+.. | ....+..+ ...+.+.+|
T Consensus 319 ~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~-------g-----------~~~~Lt~~--~~~~~~p~w 378 (428)
T PRK01029 319 PRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT-------G-----------RDYQLTTS--PENKESPSW 378 (428)
T ss_pred eEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC-------C-----------CeEEccCC--CCCccceEE
Confidence 344444555677889999999998766432 3588888853 2 22233222 124678999
Q ss_pred ccCCCEEEEEeC-CC--eEEEEECCC
Q 002778 328 SHYSQWIAIVSS-KG--TCHVFVLSP 350 (882)
Q Consensus 328 SPDg~~LAsgS~-DG--TVhIWdI~~ 350 (882)
||||++|+..+. ++ .+.+|++..
T Consensus 379 SpDG~~L~f~~~~~g~~~L~~vdl~~ 404 (428)
T PRK01029 379 AIDSLHLVYSAGNSNESELYLISLIT 404 (428)
T ss_pred CCCCCEEEEEECCCCCceEEEEECCC
Confidence 999999986543 33 455666643
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.77 E-value=6.2e-05 Score=85.41 Aligned_cols=220 Identities=20% Similarity=0.261 Sum_probs=138.2
Q ss_pred CeEEEEECCCCeEEEEEEcCCcEEEEEEcC-C-EEEEEE-CCeEEEEECCCCceeEEEecCCCcccCCCCccccccccee
Q 002778 61 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP-R-IVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGP 137 (882)
Q Consensus 61 ~tVrlWDlkTG~~V~tLkf~s~V~sV~~S~-r-lLAV~~-d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g~ 137 (882)
+-+.||| ..|.++|.|+-...|..+.|-| . +||++. .+.++--|+.+|+.+..+.+...+ ...
T Consensus 191 ~y~yvYD-~~GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~-------------~~v 256 (545)
T KOG1272|consen 191 KYVYVYD-NNGTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGR-------------TDV 256 (545)
T ss_pred ceEEEec-CCCcEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCc-------------cch
Confidence 6788888 5799999999888999999988 3 444443 456888899999988777653221 123
Q ss_pred eEEcC-cEEE-E--eCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCC
Q 002778 138 MAVGP-RWLA-Y--ASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS 213 (882)
Q Consensus 138 lAlsp-R~LA-y--ss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs 213 (882)
|.-.| +-+. . +..++.+|.- ..-.. |+ |-| | .-+.
T Consensus 257 m~qNP~NaVih~GhsnGtVSlWSP-------------------~skeP-----------Lv----KiL---c----H~g~ 295 (545)
T KOG1272|consen 257 MKQNPYNAVIHLGHSNGTVSLWSP-------------------NSKEP-----------LV----KIL---C----HRGP 295 (545)
T ss_pred hhcCCccceEEEcCCCceEEecCC-------------------CCcch-----------HH----HHH---h----cCCC
Confidence 33333 1121 1 2235666641 11000 00 000 1 1122
Q ss_pred CCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCccc
Q 002778 214 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR 293 (882)
Q Consensus 214 ~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~ 293 (882)
.+++..++++.+.+ |.+.|..|+|||+..-..+.++.. ..+...++||..|.+ | +|. |..+.||.=.-
T Consensus 296 V~siAv~~~G~YMa----TtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~SqkglL-A-~~~-G~~v~iw~d~~---- 363 (545)
T KOG1272|consen 296 VSSIAVDRGGRYMA----TTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGLL-A-LSY-GDHVQIWKDAL---- 363 (545)
T ss_pred cceEEECCCCcEEe----ecccccceeEeeeccccccceeec-CCCccccccccccce-e-eec-CCeeeeehhhh----
Confidence 34555666677765 557899999999998765555544 467889999998843 3 344 56799997532
Q ss_pred CCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCcccccc
Q 002778 294 SGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 359 (882)
Q Consensus 294 ~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~ 359 (882)
++++ .....|--++ ....|.+|.|.|-...|.+|...|-.-| |-|+.|.+++.+
T Consensus 364 ~~s~--------~~~~pYm~H~--~~~~V~~l~FcP~EDvLGIGH~~G~tsi--lVPGsGePN~Ds 417 (545)
T KOG1272|consen 364 KGSG--------HGETPYMNHR--CGGPVEDLRFCPYEDVLGIGHAGGITSI--LVPGSGEPNYDS 417 (545)
T ss_pred cCCC--------CCCcchhhhc--cCcccccceeccHHHeeeccccCCceeE--eccCCCCCCcch
Confidence 1111 1122232222 2347999999999999999999997777 567777776643
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0062 Score=67.99 Aligned_cols=84 Identities=18% Similarity=0.231 Sum_probs=58.9
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCC-cEEEEEEccCCCEEEE
Q 002778 258 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA-TIQDICFSHYSQWIAI 336 (882)
Q Consensus 258 spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a-~I~sLaFSPDg~~LAs 336 (882)
....+|..+|||++|-.+-..-..|-+|.+.+. + .+|.-+.+-.+.. .-++..|++++++|++
T Consensus 244 ~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~------~----------g~L~~~~~~~teg~~PR~F~i~~~g~~Lia 307 (346)
T COG2706 244 NWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD------G----------GKLELVGITPTEGQFPRDFNINPSGRFLIA 307 (346)
T ss_pred CceeEEEECCCCCEEEEecCCCCeEEEEEEcCC------C----------CEEEEEEEeccCCcCCccceeCCCCCEEEE
Confidence 467899999999999876554446889999763 2 1332222222222 2578999999999998
Q ss_pred EeCC-CeEEEEECCCCCCcccc
Q 002778 337 VSSK-GTCHVFVLSPFGGDSGF 357 (882)
Q Consensus 337 gS~D-GTVhIWdI~~~gg~~~l 357 (882)
+..+ .+++||.+++..|..++
T Consensus 308 a~q~sd~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 308 ANQKSDNITVFERDKETGRLTL 329 (346)
T ss_pred EccCCCcEEEEEEcCCCceEEe
Confidence 8754 57999999987766544
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0098 Score=66.44 Aligned_cols=119 Identities=21% Similarity=0.291 Sum_probs=77.6
Q ss_pred ccCCCccccccccccccCCCceEEEEECCC-CcE--EEEeccCCCC----------eEEEEECCCCCEEEEEEcCCCEEE
Q 002778 217 VSPNSVWKVGRHAGADMDNAGIVVVKDFVT-RAI--ISQFKAHTSP----------ISALCFDPSGTLLVTASVYGNNIN 283 (882)
Q Consensus 217 ~S~ss~~k~~~la~~tgs~dG~V~VWDl~s-~~~--v~~f~aH~sp----------IsaLaFSPdGtlLATAS~dGt~Ir 283 (882)
++.+.+++.+..+. -..|.|.|+-+.. |.+ +..+..|+.+ +-+..|+|+|++|++.+..-..|.
T Consensus 94 vsvd~~g~~vf~An---Y~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~ 170 (346)
T COG2706 94 VSVDEDGRFVFVAN---YHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIF 170 (346)
T ss_pred EEECCCCCEEEEEE---ccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEE
Confidence 34444454433221 3358888888855 432 2344456666 888999999999999987544699
Q ss_pred EEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEe-CCCeEEEEECCCCCCc
Q 002778 284 IFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFGGD 354 (882)
Q Consensus 284 VWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS-~DGTVhIWdI~~~gg~ 354 (882)
+|++.. |. .. ....+.+.-| +--+-|+|+|++++.-..+ .++||-+|..++..+.
T Consensus 171 ~y~~~d-------g~----L~--~~~~~~v~~G---~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~ 226 (346)
T COG2706 171 LYDLDD-------GK----LT--PADPAEVKPG---AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGK 226 (346)
T ss_pred EEEccc-------Cc----cc--cccccccCCC---CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCce
Confidence 999964 21 00 0112223333 2347799999999987665 6999999999986443
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00019 Score=82.92 Aligned_cols=167 Identities=14% Similarity=0.220 Sum_probs=111.6
Q ss_pred cCCcEEEEEEcC--CEEEEEECC-eEEEEECCCCceeEEEec-CCCcccCCCCcccccccceeeEEcCcEEEEeCCCeEe
Q 002778 79 FRSSVCMVRCSP--RIVAVGLAT-QIYCFDALTLENKFSVLT-YPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLL 154 (882)
Q Consensus 79 f~s~V~sV~~S~--rlLAV~~d~-qI~IWDa~T~e~l~tL~t-~p~p~~~~~~~~g~~~~~g~lAlspR~LAyss~~v~l 154 (882)
|.+-|..+.++. .+|++|.|+ +|.|||...-++++.+.| |.. +. |+-++|-|+++.+++
T Consensus 49 H~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHta---------------NI--FsvKFvP~tnnriv~ 111 (758)
T KOG1310|consen 49 HTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTA---------------NI--FSVKFVPYTNNRIVL 111 (758)
T ss_pred ccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeeccccc---------------ce--eEEeeeccCCCeEEE
Confidence 788899999974 799998765 699999998888998876 322 12 222555554443222
Q ss_pred ccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCCCCccCCCccccccccccccC
Q 002778 155 SNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMD 234 (882)
Q Consensus 155 wdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs 234 (882)
+|.
T Consensus 112 -----------------------------------------------------------------------------sgA 114 (758)
T KOG1310|consen 112 -----------------------------------------------------------------------------SGA 114 (758)
T ss_pred -----------------------------------------------------------------------------ecc
Confidence 234
Q ss_pred CCceEEEEECCC----------CcEEEEeccCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEecCCCcccCCCCCCcccc
Q 002778 235 NAGIVVVKDFVT----------RAIISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW 303 (882)
Q Consensus 235 ~dG~V~VWDl~s----------~~~v~~f~aH~spIsaLaFSPdG-tlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~ 303 (882)
.|..|+|+|+.. ......+..|+..|-.|+--|+| ..+-+||.||+ ||-+|+...-..+-.+.
T Consensus 115 gDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGt-irQyDiREph~c~p~~~----- 188 (758)
T KOG1310|consen 115 GDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGT-IRQYDIREPHVCNPDED----- 188 (758)
T ss_pred CcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcc-eeeecccCCccCCcccc-----
Confidence 466788888764 23445667899999999999999 78889999886 99999964211111110
Q ss_pred CCcccEEEEEEecccCCcEEEEEEccCC-CEEEEEeCCCeEEEEECC
Q 002778 304 NSSHVHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLS 349 (882)
Q Consensus 304 sss~~~l~~L~RG~t~a~I~sLaFSPDg-~~LAsgS~DGTVhIWdI~ 349 (882)
-...+..+. + .--...++..||.. .+||+|++|--++|||+.
T Consensus 189 --~~~~l~ny~-~-~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 189 --CPSILVNYN-P-QLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred --ccHHHHHhc-h-hhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 000010000 0 00136789999864 689999999999999964
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00053 Score=75.44 Aligned_cols=111 Identities=14% Similarity=0.204 Sum_probs=65.4
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCE--EEEE-----ecCCCcccCCCCCCccccCC
Q 002778 233 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNN--INIF-----RIMPSCMRSGSGNHKYDWNS 305 (882)
Q Consensus 233 gs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~--IrVW-----di~p~~~~~~sG~~~~d~ss 305 (882)
...+-.|.||.+.+.+.. .++--...+..++|+|||++.|.++..+-. ++|+ .+..++..+.....+..|+.
T Consensus 110 seF~lriTVWSL~t~~~~-~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsP 188 (447)
T KOG4497|consen 110 SEFDLRITVWSLNTQKGY-LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSP 188 (447)
T ss_pred ecceeEEEEEEeccceeE-EecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECC
Confidence 356778999999876543 333233456788999999999888763210 1111 11000000000001122322
Q ss_pred cc-----------cEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEE
Q 002778 306 SH-----------VHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV 347 (882)
Q Consensus 306 s~-----------~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWd 347 (882)
.. -.+|..+||. .|..++|||.+++||+|+.|+.+||-+
T Consensus 189 dg~~laVwd~~Leykv~aYe~~l---G~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 189 DGNWLAVWDNVLEYKVYAYERGL---GLKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred CCcEEEEecchhhheeeeeeecc---ceeEEEeccccceEEeeccchhhhhhc
Confidence 21 2344455664 388999999999999999999999854
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00034 Score=52.79 Aligned_cols=37 Identities=30% Similarity=0.434 Sum_probs=31.5
Q ss_pred EEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEE
Q 002778 309 HLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV 347 (882)
Q Consensus 309 ~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWd 347 (882)
.+..+ +|+. ..|++|+|+|++++|++++.|++|+|||
T Consensus 3 ~~~~~-~~h~-~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTF-RGHS-SSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEE-ESSS-SSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEE-cCCC-CcEEEEEEecccccceeeCCCCEEEEEC
Confidence 44555 4654 5799999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0089 Score=70.00 Aligned_cols=97 Identities=21% Similarity=0.361 Sum_probs=76.9
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEE
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~ 311 (882)
+++.|++|..|+...++.++.+++-+..+.+++.+|||..|++||. .|++||+.+ + ..+.
T Consensus 119 S~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as~---~ik~~~~~~-------k----------evv~ 178 (541)
T KOG4547|consen 119 SVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTASR---QIKVLDIET-------K----------EVVI 178 (541)
T ss_pred ecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEeccc---eEEEEEccC-------c----------eEEE
Confidence 3467899999999999999999999999999999999999999995 599999975 2 2344
Q ss_pred EEEecccCCcEEEEEEccC-----CCEEEEE-eCCCeEEEEECCC
Q 002778 312 KLHRGITSATIQDICFSHY-----SQWIAIV-SSKGTCHVFVLSP 350 (882)
Q Consensus 312 ~L~RG~t~a~I~sLaFSPD-----g~~LAsg-S~DGTVhIWdI~~ 350 (882)
+| .|| ..+|.+++|--+ |.++.++ -...-+-+|-+..
T Consensus 179 ~f-tgh-~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 179 TF-TGH-GSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred Ee-cCC-CcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 44 565 468999999888 6666554 3444477887764
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.002 Score=75.12 Aligned_cols=126 Identities=16% Similarity=0.253 Sum_probs=87.6
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEec
Q 002778 237 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 316 (882)
Q Consensus 237 G~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG 316 (882)
-.|.=+++..|+.+.-|..-..+|+++..++--.|||+|..+|. +..||-..- +--| ..+...+ +-....+
T Consensus 155 ~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~-VEfwDpR~k---srv~--~l~~~~~---v~s~pg~ 225 (703)
T KOG2321|consen 155 SEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGV-VEFWDPRDK---SRVG--TLDAASS---VNSHPGG 225 (703)
T ss_pred cceEEEEccccccccccccccccceeeeecCccceEEecccCce-EEEecchhh---hhhe--eeecccc---cCCCccc
Confidence 45667788899999999888899999999999999999998775 899997531 1001 0000000 0000011
Q ss_pred ccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccccccccCCCCCCcccCCCCCCcc
Q 002778 317 ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPVLSLPWW 378 (882)
Q Consensus 317 ~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~H~~~~~~~~~sp~~~lpw~ 378 (882)
.....|++|+|+.||-.+++|++.|.|.||||... .+.-+..|. +-.|+..|-|-
T Consensus 226 ~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~-~pl~~kdh~------~e~pi~~l~~~ 280 (703)
T KOG2321|consen 226 DAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS-KPLLVKDHG------YELPIKKLDWQ 280 (703)
T ss_pred cccCcceEEEecCCceeEEeeccCCcEEEEEcccC-CceeecccC------Cccceeeeccc
Confidence 11235999999999999999999999999999864 344456665 45566666553
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.019 Score=66.41 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=36.8
Q ss_pred CeEEEEECCCCeEEEEEEcCCcEEEEEEcC--CEEEEEEC----CeEEEEECCCCc
Q 002778 61 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLA----TQIYCFDALTLE 110 (882)
Q Consensus 61 ~tVrlWDlkTG~~V~tLkf~s~V~sV~~S~--rlLAV~~d----~qI~IWDa~T~e 110 (882)
..|.++|+.+|+......+++.+...++++ +.|+...+ .+|+++|+.+++
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred CEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence 468899999998766666777777777876 46665443 469999988776
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0014 Score=72.27 Aligned_cols=169 Identities=15% Similarity=0.133 Sum_probs=101.2
Q ss_pred cCCeEEEEEC-CCCeEEEEE---Ec-----CCcEEEEEEcC---CEEEEEEC-CeEEEEECCCCceeEEEecCCCcccCC
Q 002778 59 SPTAVRFYSF-QSHCYEHVL---RF-----RSSVCMVRCSP---RIVAVGLA-TQIYCFDALTLENKFSVLTYPVPQLAG 125 (882)
Q Consensus 59 sp~tVrlWDl-kTG~~V~tL---kf-----~s~V~sV~~S~---rlLAV~~d-~qI~IWDa~T~e~l~tL~t~p~p~~~~ 125 (882)
..+.||++|+ +.|+--..+ .+ .+-|..++|+| ..+|++.. +++-||.-..+..++.+-+|..
T Consensus 177 ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~g----- 251 (406)
T KOG2919|consen 177 YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGG----- 251 (406)
T ss_pred ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCC-----
Confidence 4489999999 777632222 12 34567788887 68899764 4555555556777777766544
Q ss_pred CCcccccccceeeEEcC--cEEEEe----CCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccc
Q 002778 126 QGAVGINVGYGPMAVGP--RWLAYA----SNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSK 199 (882)
Q Consensus 126 ~~~~g~~~~~g~lAlsp--R~LAys----s~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~Glik 199 (882)
++.-+.+.+ +-| |+ ++.++.||.-.. +.+|.
T Consensus 252 --------GvThL~~~edGn~l-fsGaRk~dkIl~WDiR~~------------------~~pv~---------------- 288 (406)
T KOG2919|consen 252 --------GVTHLQWCEDGNKL-FSGARKDDKILCWDIRYS------------------RDPVY---------------- 288 (406)
T ss_pred --------CeeeEEeccCcCee-cccccCCCeEEEEeehhc------------------cchhh----------------
Confidence 123333333 111 22 235666763100 00110
Q ss_pred cccccccccCCCCCCCC--ccCCCccccccccccccCCCceEEEEECCC-CcEEEEeccCCCCeEEEEECCCCCEEEEEE
Q 002778 200 TLSKYCQELLPDGSSSP--VSPNSVWKVGRHAGADMDNAGIVVVKDFVT-RAIISQFKAHTSPISALCFDPSGTLLVTAS 276 (882)
Q Consensus 200 tLs~~~~~l~pdgs~s~--~S~ss~~k~~~la~~tgs~dG~V~VWDl~s-~~~v~~f~aH~spIsaLaFSPdGtlLATAS 276 (882)
.|.++.. ..+.. |-..+.+..++ +|+.+|.|++||+.. +..+..+..|..-++.++|+|--.+|||+|
T Consensus 289 ~L~rhv~-----~TNQRI~FDld~~~~~La----sG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatss 359 (406)
T KOG2919|consen 289 ALERHVG-----DTNQRILFDLDPKGEILA----SGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSS 359 (406)
T ss_pred hhhhhcc-----CccceEEEecCCCCceee----ccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeecc
Confidence 0111110 00111 11223334433 578999999999998 666888999999999999999999999988
Q ss_pred cCCCEEEEEecC
Q 002778 277 VYGNNINIFRIM 288 (882)
Q Consensus 277 ~dGt~IrVWdi~ 288 (882)
|+ |+|...
T Consensus 360 --Gq--r~f~~~ 367 (406)
T KOG2919|consen 360 --GQ--RIFKYP 367 (406)
T ss_pred --Cc--eeecCC
Confidence 55 677764
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0023 Score=79.83 Aligned_cols=96 Identities=14% Similarity=0.307 Sum_probs=71.8
Q ss_pred EECCCCcEEEEeccCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCC
Q 002778 242 KDFVTRAIISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA 320 (882)
Q Consensus 242 WDl~s~~~v~~f~aH~spIsaLaFSPdG-tlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a 320 (882)
|... |..++++..|...|..+|.++.. .++||||.||+ |+||+...-. +.+ +. ......|.. ...
T Consensus 1034 W~p~-G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGt-VKvW~~~k~~-~~~-~s------~rS~ltys~----~~s 1099 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGT-VKVWNLRKLE-GEG-GS------ARSELTYSP----EGS 1099 (1431)
T ss_pred CCcc-ceEeehhhhccccccceeecCCCCceEEEecCCce-EEEeeehhhh-cCc-ce------eeeeEEEec----cCC
Confidence 5553 77899999999999999887755 89999999886 9999985321 110 10 011222322 234
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 321 TIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 321 ~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
++..+.+.+.+..+|+++.||.|++++|+.+
T Consensus 1100 r~~~vt~~~~~~~~Av~t~DG~v~~~~id~~ 1130 (1431)
T KOG1240|consen 1100 RVEKVTMCGNGDQFAVSTKDGSVRVLRIDHY 1130 (1431)
T ss_pred ceEEEEeccCCCeEEEEcCCCeEEEEEcccc
Confidence 7899999999999999999999999999875
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0035 Score=73.14 Aligned_cols=187 Identities=14% Similarity=0.167 Sum_probs=121.8
Q ss_pred cCCeEEEEECCCCeEEEEEEcC-CcEEEEEEcC--CEEEEEE-CCeEEEEECCCCceeEEEecCCCcccCCCCccccccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 134 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLkf~-s~V~sV~~S~--rlLAV~~-d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~ 134 (882)
+...|.-.+|..|+.+.-|+-. +.+..|.+++ .+||+|. ++.|.+||.++.....+|..... .. ..++.+.
T Consensus 153 sg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~-v~---s~pg~~~- 227 (703)
T KOG2321|consen 153 SGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASS-VN---SHPGGDA- 227 (703)
T ss_pred cCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccc-cC---CCccccc-
Confidence 4456777799999988888855 6788888886 7888887 67899999998777666653111 00 0011100
Q ss_pred ceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCC
Q 002778 135 YGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS 214 (882)
Q Consensus 135 ~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~ 214 (882)
+.++..|.|.++++.
T Consensus 228 ----~~svTal~F~d~gL~------------------------------------------------------------- 242 (703)
T KOG2321|consen 228 ----APSVTALKFRDDGLH------------------------------------------------------------- 242 (703)
T ss_pred ----cCcceEEEecCCcee-------------------------------------------------------------
Confidence 001112233222111
Q ss_pred CCccCCCccccccccccccCCCceEEEEECCCCcEEEEe-ccCCCCeEEEEECCC--CCEEEEEEcCCCEEEEEecCCCc
Q 002778 215 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF-KAHTSPISALCFDPS--GTLLVTASVYGNNINIFRIMPSC 291 (882)
Q Consensus 215 s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f-~aH~spIsaLaFSPd--GtlLATAS~dGt~IrVWdi~p~~ 291 (882)
++ .|...|.|.|||+.+.+.+..- ....-||..|.|.+. +..|+|.. ...++|||-.+
T Consensus 243 -------------~a--VGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~D--k~~~kiWd~~~-- 303 (703)
T KOG2321|consen 243 -------------VA--VGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMD--KRILKIWDECT-- 303 (703)
T ss_pred -------------EE--eeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecc--hHHhhhccccc--
Confidence 11 2345789999999988765332 233568999999876 45677665 46799999754
Q ss_pred ccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCC
Q 002778 292 MRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 352 (882)
Q Consensus 292 ~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~g 352 (882)
| .....+ -....|.++||-|++-.+.++-.++.+|.|=|...|
T Consensus 304 -----G----------k~~asi---Ept~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LG 346 (703)
T KOG2321|consen 304 -----G----------KPMASI---EPTSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLG 346 (703)
T ss_pred -----C----------Cceeec---cccCCcCceeeecCCceEEEecCCCcceeEEccccC
Confidence 3 122221 122459999999999999999999999988876544
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.21 Score=51.48 Aligned_cols=58 Identities=10% Similarity=-0.071 Sum_probs=42.9
Q ss_pred CCeEEEEECCCCeEEEEEEcC---CcEE-EEEEcCCEEEEE-ECCeEEEEECCCCceeEEEec
Q 002778 60 PTAVRFYSFQSHCYEHVLRFR---SSVC-MVRCSPRIVAVG-LATQIYCFDALTLENKFSVLT 117 (882)
Q Consensus 60 p~tVrlWDlkTG~~V~tLkf~---s~V~-sV~~S~rlLAV~-~d~qI~IWDa~T~e~l~tL~t 117 (882)
.++|..||+++|+.+....+. .... ......+.|.++ .++.|++||+.||+.+++...
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~ 64 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL 64 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec
Confidence 367999999999999999762 2223 222245555554 678899999999999888864
|
... |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0057 Score=67.97 Aligned_cols=219 Identities=15% Similarity=0.229 Sum_probs=129.7
Q ss_pred cCCeEEEE-ECCCCeEEEEEE--cCCcEEEEEEcC--CEEEEEECC-eEEEEECC-CCceeEEEecCCCcccCCCCcccc
Q 002778 59 SPTAVRFY-SFQSHCYEHVLR--FRSSVCMVRCSP--RIVAVGLAT-QIYCFDAL-TLENKFSVLTYPVPQLAGQGAVGI 131 (882)
Q Consensus 59 sp~tVrlW-DlkTG~~V~tLk--f~s~V~sV~~S~--rlLAV~~d~-qI~IWDa~-T~e~l~tL~t~p~p~~~~~~~~g~ 131 (882)
.+.+|||| ...+|++...+. .+++++++.+.. ++|.+++++ .+.=|-+. ..+...-++.+..-+ .. +
T Consensus 44 ~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~----~~--v 117 (404)
T KOG1409|consen 44 EDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQ----AR--V 117 (404)
T ss_pred ccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhh----cc--e
Confidence 56899999 566799888887 467889888876 788888864 56666432 222222222222110 00 0
Q ss_pred cccceeeEEcCcEEEEeCC-CeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCC
Q 002778 132 NVGYGPMAVGPRWLAYASN-TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLP 210 (882)
Q Consensus 132 ~~~~g~lAlspR~LAyss~-~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~p 210 (882)
.--..++.+.|+...+. +-..|.+- .+|.-+.+|..+. .
T Consensus 118 --~~~if~~~~e~V~s~~~dk~~~~hc~------------------e~~~~lg~Y~~~~-------------------~- 157 (404)
T KOG1409|consen 118 --SAIVFSLTHEWVLSTGKDKQFAWHCT------------------ESGNRLGGYNFET-------------------P- 157 (404)
T ss_pred --eeEEecCCceeEEEeccccceEEEee------------------ccCCcccceEeec-------------------c-
Confidence 00123445577765543 33444321 1112222222210 0
Q ss_pred CCCCCCccCCCccccccccccccCCCceEEEEE--CCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecC
Q 002778 211 DGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKD--FVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM 288 (882)
Q Consensus 211 dgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWD--l~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~ 288 (882)
.++..++-. .++ .|+..|.|.+-. ......+.++.+|..+|.+++++|...+|.++.. ++.+.+||+-
T Consensus 158 ---~t~~~~d~~---~~f---vGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~-d~~vi~wdig 227 (404)
T KOG1409|consen 158 ---ASALQFDAL---YAF---VGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGAS-DHSVIMWDIG 227 (404)
T ss_pred ---CCCCceeeE---EEE---ecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccc-cCceEEEecc
Confidence 000001100 001 234445444433 3345678999999999999999999999999998 4568899993
Q ss_pred CCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 289 PSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 289 p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
- .. -..+++. |+. ..|+.+..-+--+.|.+++.||-|-+|+++-.
T Consensus 228 g-----~~-----------g~~~el~-gh~-~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 228 G-----RK-----------GTAYELQ-GHN-DKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred C-----Cc-----------ceeeeec-cch-hhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 1 01 1445554 333 46888888788899999999999999999754
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0032 Score=70.71 Aligned_cols=56 Identities=16% Similarity=0.256 Sum_probs=49.1
Q ss_pred cCCCceEEEEECCCCcEEEE-eccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCC
Q 002778 233 MDNAGIVVVKDFVTRAIISQ-FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP 289 (882)
Q Consensus 233 gs~dG~V~VWDl~s~~~v~~-f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p 289 (882)
|..-|.+..+|+..++.+.. |++-++.|++|..+|.+.+||+++.| +.+||||+.+
T Consensus 265 gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLD-RyvRIhD~kt 321 (412)
T KOG3881|consen 265 GNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLD-RYVRIHDIKT 321 (412)
T ss_pred ecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccc-eeEEEeeccc
Confidence 45567888999999988766 88899999999999999999999995 5699999964
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0066 Score=66.97 Aligned_cols=80 Identities=19% Similarity=0.283 Sum_probs=61.4
Q ss_pred EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCcccc-CCcccEEEEEEecccCCcEEEEEEccC
Q 002778 252 QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW-NSSHVHLYKLHRGITSATIQDICFSHY 330 (882)
Q Consensus 252 ~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~-sss~~~l~~L~RG~t~a~I~sLaFSPD 330 (882)
.|..|.....++.|+|.++++|++|. +++|-||=..-. -|| -+ +|+.+-. ...|.+++|.|+
T Consensus 95 vLlRiNrAAt~V~WsP~enkFAVgSg-ar~isVcy~E~E----------NdWWVs--KhikkPi----rStv~sldWhpn 157 (361)
T KOG1523|consen 95 VLLRINRAATCVKWSPKENKFAVGSG-ARLISVCYYEQE----------NDWWVS--KHIKKPI----RSTVTSLDWHPN 157 (361)
T ss_pred eEEEeccceeeEeecCcCceEEeccC-ccEEEEEEEecc----------cceehh--hhhCCcc----ccceeeeeccCC
Confidence 44457788999999999999999997 788999887421 122 11 2232211 246999999999
Q ss_pred CCEEEEEeCCCeEEEEEC
Q 002778 331 SQWIAIVSSKGTCHVFVL 348 (882)
Q Consensus 331 g~~LAsgS~DGTVhIWdI 348 (882)
.-.||+||.|+.++||..
T Consensus 158 nVLlaaGs~D~k~rVfSa 175 (361)
T KOG1523|consen 158 NVLLAAGSTDGKCRVFSA 175 (361)
T ss_pred cceecccccCcceeEEEE
Confidence 999999999999999975
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.011 Score=74.05 Aligned_cols=108 Identities=12% Similarity=0.112 Sum_probs=73.1
Q ss_pred CCCceEEEEECCCCcEEEEecc--CCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEE
Q 002778 234 DNAGIVVVKDFVTRAIISQFKA--HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 234 s~dG~V~VWDl~s~~~v~~f~a--H~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~ 311 (882)
-.-+.|..||+.....+..++. ..+.|++++.||-+.+|++|...|. +-+||+.- + ..+.
T Consensus 1170 T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~-l~lWDLRF-------~----------~~i~ 1231 (1431)
T KOG1240|consen 1170 TDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQ-LVLWDLRF-------R----------VPIL 1231 (1431)
T ss_pred EeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCce-EEEEEeec-------C----------ceee
Confidence 3457899999998776655543 3478999999999999999999786 78999963 1 1222
Q ss_pred EEEecccCCcEEEEEEc---cCCCEEEEEe--CCCeEEEEECCCCCCccccccc
Q 002778 312 KLHRGITSATIQDICFS---HYSQWIAIVS--SKGTCHVFVLSPFGGDSGFQTL 360 (882)
Q Consensus 312 ~L~RG~t~a~I~sLaFS---PDg~~LAsgS--~DGTVhIWdI~~~gg~~~l~~H 360 (882)
...-+. .++|.-|+.. +...++++++ ..+.|.+|++..+-+...+..-
T Consensus 1232 sw~~P~-~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1232 SWEHPA-RAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWAS 1284 (1431)
T ss_pred cccCcc-cCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcC
Confidence 222222 2456555544 4444655554 4678999999987666655443
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.06 Score=69.15 Aligned_cols=73 Identities=10% Similarity=0.099 Sum_probs=52.1
Q ss_pred EEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEE-ecc-----------cCCcEEEEEEc
Q 002778 261 SALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-RGI-----------TSATIQDICFS 328 (882)
Q Consensus 261 saLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~-RG~-----------t~a~I~sLaFS 328 (882)
..|+|+++|+++++-+. ++.|++||.... .+..+. .|. .-.....|+++
T Consensus 807 ~Gvavd~dG~LYVADs~-N~rIrviD~~tg------------------~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd 867 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSY-NHKIKKLDPATK------------------RVTTLAGTGKAGFKDGKALKAQLSEPAGLALG 867 (1057)
T ss_pred ceeeEeCCCcEEEEECC-CCEEEEEECCCC------------------eEEEEeccCCcCCCCCcccccccCCceEEEEe
Confidence 47899999997776665 567999998531 111111 010 00146789999
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCC
Q 002778 329 HYSQWIAIVSSKGTCHVFVLSPFG 352 (882)
Q Consensus 329 PDg~~LAsgS~DGTVhIWdI~~~g 352 (882)
+||+.+++-+.+++|++||+.+..
T Consensus 868 ~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 868 ENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred CCCCEEEEECCCCEEEEEECCCCc
Confidence 999999999999999999997643
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.069 Score=61.84 Aligned_cols=83 Identities=19% Similarity=0.138 Sum_probs=47.8
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEE-
Q 002778 236 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH- 314 (882)
Q Consensus 236 dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~- 314 (882)
+..|.++|+.+++ ...+..+........|+|||+.|+-.+..+..-.||.+... .| ...++.
T Consensus 256 ~~~Iy~~dl~~g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~-----~g-----------~~~rlt~ 318 (419)
T PRK04043 256 QPDIYLYDTNTKT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLN-----SG-----------SVEQVVF 318 (419)
T ss_pred CcEEEEEECCCCc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECC-----CC-----------CeEeCcc
Confidence 3567888887765 34444443323345799999988776654333445544211 02 111111
Q ss_pred ecccCCcEEEEEEccCCCEEEEEeCC
Q 002778 315 RGITSATIQDICFSHYSQWIAIVSSK 340 (882)
Q Consensus 315 RG~t~a~I~sLaFSPDg~~LAsgS~D 340 (882)
.|. ...+|||||++||..+..
T Consensus 319 ~g~-----~~~~~SPDG~~Ia~~~~~ 339 (419)
T PRK04043 319 HGK-----NNSSVSTYKNYIVYSSRE 339 (419)
T ss_pred CCC-----cCceECCCCCEEEEEEcC
Confidence 122 124899999999988765
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0027 Score=70.15 Aligned_cols=87 Identities=17% Similarity=0.294 Sum_probs=68.7
Q ss_pred CCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEE
Q 002778 234 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 313 (882)
Q Consensus 234 s~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L 313 (882)
..+++|++|++...+-...+..-..++.++++||||+.|.+.|.=+-.|.||.+.+. ..+-+
T Consensus 68 yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~------------------~~~~~ 129 (447)
T KOG4497|consen 68 YKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ------------------KGYLL 129 (447)
T ss_pred eccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccc------------------eeEEe
Confidence 568999999999888888888889999999999999877766655666999999641 22333
Q ss_pred EecccCCcEEEEEEccCCCEEEEEeCC
Q 002778 314 HRGITSATIQDICFSHYSQWIAIVSSK 340 (882)
Q Consensus 314 ~RG~t~a~I~sLaFSPDg~~LAsgS~D 340 (882)
.. ..+.+..++|.|||++.|..+.+
T Consensus 130 ~~--pK~~~kg~~f~~dg~f~ai~sRr 154 (447)
T KOG4497|consen 130 PH--PKTNVKGYAFHPDGQFCAILSRR 154 (447)
T ss_pred cc--cccCceeEEECCCCceeeeeecc
Confidence 22 22346889999999999999876
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0012 Score=74.18 Aligned_cols=99 Identities=12% Similarity=0.107 Sum_probs=73.2
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEe
Q 002778 236 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 315 (882)
Q Consensus 236 dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~R 315 (882)
...+.+|....+. ...+.+|-+-+..|+|+||++++.||+.|++ |||=.. | ++ .-+..+.-
T Consensus 131 ~~~~di~s~~~~~-~~~~lGhvSml~dVavS~D~~~IitaDRDEk-IRvs~y-p-------a~---------f~Iesfcl 191 (390)
T KOG3914|consen 131 VYSFDILSADSGR-CEPILGHVSMLLDVAVSPDDQFIITADRDEK-IRVSRY-P-------AT---------FVIESFCL 191 (390)
T ss_pred ceeeeeecccccC-cchhhhhhhhhheeeecCCCCEEEEecCCce-EEEEec-C-------cc---------cchhhhcc
Confidence 4455666655543 4456689999999999999999999999775 898776 3 11 12334445
Q ss_pred cccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCcc
Q 002778 316 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS 355 (882)
Q Consensus 316 G~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~ 355 (882)
||+ .-|..|+.-+ ++.|+++|-|+|+++||+..+....
T Consensus 192 GH~-eFVS~isl~~-~~~LlS~sGD~tlr~Wd~~sgk~L~ 229 (390)
T KOG3914|consen 192 GHK-EFVSTISLTD-NYLLLSGSGDKTLRLWDITSGKLLD 229 (390)
T ss_pred ccH-hheeeeeecc-CceeeecCCCCcEEEEecccCCccc
Confidence 765 3577787754 5679999999999999999877663
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0016 Score=83.60 Aligned_cols=90 Identities=22% Similarity=0.349 Sum_probs=65.9
Q ss_pred CCceEEEEECCC--CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEE
Q 002778 235 NAGIVVVKDFVT--RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 312 (882)
Q Consensus 235 ~dG~V~VWDl~s--~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~ 312 (882)
.++.+.+||..- +..+.. .+|.+.++++++-|.-++|.||+.+|. |.|||+.- ++
T Consensus 2313 d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~G~-v~l~D~rq------------------rq--- 2369 (2439)
T KOG1064|consen 2313 DNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRKGE-VCLFDIRQ------------------RQ--- 2369 (2439)
T ss_pred CCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCcCc-EEEeehHH------------------HH---
Confidence 356788999642 222333 899999999999999999999999997 89999952 11
Q ss_pred EEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCcc
Q 002778 313 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS 355 (882)
Q Consensus 313 L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~ 355 (882)
| |.+ ++. +. .-.++++++.+|+++||+++..+-..
T Consensus 2370 l-~h~----~~~--~~-~~~~f~~~ss~g~ikIw~~s~~~ll~ 2404 (2439)
T KOG1064|consen 2370 L-RHT----FQA--LD-TREYFVTGSSEGNIKIWRLSEFGLLH 2404 (2439)
T ss_pred H-HHH----hhh--hh-hhheeeccCcccceEEEEccccchhh
Confidence 1 111 111 22 44689999999999999998875443
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.014 Score=71.35 Aligned_cols=184 Identities=14% Similarity=0.131 Sum_probs=125.4
Q ss_pred CeEEEEECCCCeEEEEEEcCC-cEEEEEEcCCEEEEEE-CCeEEEEECCCCceeEEEecCCCcccCCCCcccccccceee
Q 002778 61 TAVRFYSFQSHCYEHVLRFRS-SVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPM 138 (882)
Q Consensus 61 ~tVrlWDlkTG~~V~tLkf~s-~V~sV~~S~rlLAV~~-d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g~l 138 (882)
..+..+|++++++.+.....+ .|.-++-+.+.+.+|. .++|.+=|.++.+.++++.+|... ...+
T Consensus 157 ~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~s-------------iSDf 223 (1118)
T KOG1275|consen 157 EKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGS-------------ISDF 223 (1118)
T ss_pred hheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccc-------------eeee
Confidence 557778999999998887543 6888889988888875 578999999999999999988661 1233
Q ss_pred EEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCCCCcc
Q 002778 139 AVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVS 218 (882)
Q Consensus 139 AlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~s~~S 218 (882)
.+..+.|+..+...
T Consensus 224 Dv~GNlLitCG~S~------------------------------------------------------------------ 237 (1118)
T KOG1275|consen 224 DVQGNLLITCGYSM------------------------------------------------------------------ 237 (1118)
T ss_pred eccCCeEEEeeccc------------------------------------------------------------------
Confidence 43334444332100
Q ss_pred CCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEecCCCcccCCCC
Q 002778 219 PNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSG 297 (882)
Q Consensus 219 ~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdG-tlLATAS~dGt~IrVWdi~p~~~~~~sG 297 (882)
+...+ ..|--|+|||++..+.+.-+.-|.+| .-+.|.|.= +.||.+|..|. ..+-|...-
T Consensus 238 -----R~~~l-----~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq-~q~vd~~~l------- 298 (1118)
T KOG1275|consen 238 -----RRYNL-----AMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQ-FQFVDTATL------- 298 (1118)
T ss_pred -----ccccc-----cccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccc-eeecccccc-------
Confidence 00000 13566899999999888877777777 568899975 46677777676 677774320
Q ss_pred CCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 002778 298 NHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 350 (882)
Q Consensus 298 ~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~ 350 (882)
+.-...++.+ ......|..+.||+.++.+|.+..+|.||+|.=.+
T Consensus 299 ------sNP~~~~~~v--~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~~ 343 (1118)
T KOG1275|consen 299 ------SNPPAGVKMV--NPNGSGISAFDISSNGDALAFGDHEGHVNLWADRP 343 (1118)
T ss_pred ------CCCccceeEE--ccCCCcceeEEecCCCceEEEecccCcEeeecCCC
Confidence 0000111211 11123489999999999999999999999998433
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0075 Score=66.53 Aligned_cols=89 Identities=18% Similarity=0.258 Sum_probs=62.3
Q ss_pred ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCc--ccCCCCCCccccCCc---ccEEEEEEecccCCcEEEEEEc
Q 002778 254 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSC--MRSGSGNHKYDWNSS---HVHLYKLHRGITSATIQDICFS 328 (882)
Q Consensus 254 ~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~--~~~~sG~~~~d~sss---~~~l~~L~RG~t~a~I~sLaFS 328 (882)
+.+.+.|.+|.|.|++-+||++|.|+. .|||..---. .+. ....|.+. ...+.++. .....|..+.||
T Consensus 143 kPirStv~sldWhpnnVLlaaGs~D~k-~rVfSayIK~Vdekp----ap~pWgsk~PFG~lm~E~~--~~ggwvh~v~fs 215 (361)
T KOG1523|consen 143 KPIRSTVTSLDWHPNNVLLAAGSTDGK-CRVFSAYIKGVDEKP----APTPWGSKMPFGQLMSEAS--SSGGWVHGVLFS 215 (361)
T ss_pred CccccceeeeeccCCcceecccccCcc-eeEEEEeeeccccCC----CCCCCccCCcHHHHHHhhc--cCCCceeeeEeC
Confidence 357889999999999999999999886 8999742100 000 01123222 13344442 233579999999
Q ss_pred cCCCEEEEEeCCCeEEEEECC
Q 002778 329 HYSQWIAIVSSKGTCHVFVLS 349 (882)
Q Consensus 329 PDg~~LAsgS~DGTVhIWdI~ 349 (882)
|+|..||-.+.|.++.+=|-.
T Consensus 216 ~sG~~lawv~Hds~v~~~da~ 236 (361)
T KOG1523|consen 216 PSGNRLAWVGHDSTVSFVDAA 236 (361)
T ss_pred CCCCEeeEecCCCceEEeecC
Confidence 999999999999999986643
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.021 Score=66.96 Aligned_cols=131 Identities=17% Similarity=0.173 Sum_probs=89.9
Q ss_pred CCeEEEEECCCCeEEEEEE---cCCcEEEEEEcCC---EEEEEECCeEEEEECCCCceeEEEecCCCcccCCCCcccccc
Q 002778 60 PTAVRFYSFQSHCYEHVLR---FRSSVCMVRCSPR---IVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 133 (882)
Q Consensus 60 p~tVrlWDlkTG~~V~tLk---f~s~V~sV~~S~r---lLAV~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~ 133 (882)
.+.|.+|++..|+.-..+. |.+.|..+..+.+ +-.++.+.++..|+..+...+......+..
T Consensus 79 ~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~------------ 146 (541)
T KOG4547|consen 79 QGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPL------------ 146 (541)
T ss_pred CccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCc------------
Confidence 3678999999999888886 7888888876643 344566778999998776654444332110
Q ss_pred cceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCC
Q 002778 134 GYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS 213 (882)
Q Consensus 134 ~~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs 213 (882)
+.. |.+++ +
T Consensus 147 -~~s-------l~is~---------------------------D------------------------------------ 155 (541)
T KOG4547|consen 147 -VSS-------LCISP---------------------------D------------------------------------ 155 (541)
T ss_pred -cce-------EEEcC---------------------------C------------------------------------
Confidence 001 12211 1
Q ss_pred CCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCC-----CCEEEEEEcCCCEEEEEecC
Q 002778 214 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPS-----GTLLVTASVYGNNINIFRIM 288 (882)
Q Consensus 214 ~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPd-----GtlLATAS~dGt~IrVWdi~ 288 (882)
++.+. ...+.|++||+.+++.+.+|.+|.++|++++|--+ |.++.+...-++.|.+|-+.
T Consensus 156 ---------~~~l~------~as~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 156 ---------GKILL------TASRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred ---------CCEEE------eccceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 11111 12368999999999999999999999999999877 66665544445668899885
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.16 Score=64.53 Aligned_cols=98 Identities=14% Similarity=0.223 Sum_probs=65.7
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC--CCEEEEEecCCCcccCCCCCCccccCCcccEEEEE
Q 002778 236 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY--GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 313 (882)
Q Consensus 236 dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~d--Gt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L 313 (882)
-..++||+-. |....+-..-.+--.+|+|-|+|+++|++-.. .+.|.+|.- ||.. +--+.+
T Consensus 236 ~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr------NGLr----------hgeF~l 298 (928)
T PF04762_consen 236 RRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER------NGLR----------HGEFTL 298 (928)
T ss_pred eeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec------CCcE----------eeeEec
Confidence 3689999976 55444333222223478999999999998652 344556653 3221 223455
Q ss_pred EecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 314 HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 314 ~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
+.......|..|+|++||..||+.-.|. |.||-...+
T Consensus 299 ~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY 335 (928)
T PF04762_consen 299 RFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNY 335 (928)
T ss_pred CCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCC
Confidence 4323345799999999999999987654 999998776
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.01 Score=68.90 Aligned_cols=96 Identities=13% Similarity=0.168 Sum_probs=69.3
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEE
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~ 311 (882)
+++.||.|++|.-. |-...++.....+|.|++|.|+..-++-+-. |+ |.|=.+.+. ..+
T Consensus 121 t~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h-~~IKpL~~n-----------------~k~- 179 (737)
T KOG1524|consen 121 TAGEDGVIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNSIVFCQG-GH-ISIKPLAAN-----------------SKI- 179 (737)
T ss_pred eecCCceEEEEecc-chHHHHHhhcCceeEEEEECCCCCceEEecC-Ce-EEEeecccc-----------------cce-
Confidence 56899999999864 4334455556789999999998876555443 44 656555431 122
Q ss_pred EEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECC
Q 002778 312 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 349 (882)
Q Consensus 312 ~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~ 349 (882)
++.-.+...|.++.|++.+..|++|+.|-..+|||-.
T Consensus 180 -i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~ 216 (737)
T KOG1524|consen 180 -IRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ 216 (737)
T ss_pred -eEEeccCcEEEEeecCccccceeecCCceeEEeeccc
Confidence 2222344689999999999999999999999999963
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.062 Score=60.67 Aligned_cols=234 Identities=15% Similarity=0.065 Sum_probs=125.8
Q ss_pred CCeEEEEECCCCeEEEEEEcC---CcEEEEEEcC--CEEEEEE-CCeEEEEECCCCce---eEEEecCCCcccCCCCccc
Q 002778 60 PTAVRFYSFQSHCYEHVLRFR---SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLEN---KFSVLTYPVPQLAGQGAVG 130 (882)
Q Consensus 60 p~tVrlWDlkTG~~V~tLkf~---s~V~sV~~S~--rlLAV~~-d~qI~IWDa~T~e~---l~tL~t~p~p~~~~~~~~g 130 (882)
.++|.+-|+.|.+.+-.+.+. +.||.+..+| .+++++. ++.|-+||.+.... +..+..++.
T Consensus 126 ~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~---------- 195 (609)
T KOG4227|consen 126 WGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGK---------- 195 (609)
T ss_pred cceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCc----------
Confidence 478889999999988888754 4899999887 6676655 67899999986552 222212222
Q ss_pred ccccceeeEEcC---cEEEEeCC--CeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccc
Q 002778 131 INVGYGPMAVGP---RWLAYASN--TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYC 205 (882)
Q Consensus 131 ~~~~~g~lAlsp---R~LAyss~--~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~ 205 (882)
+ +-..-|.| ++|+.++. ++-+|+.-.. |. .+.+|.+- +.|...-
T Consensus 196 -~--F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~--~~----------------~~~~~~~~----------~~L~~~~ 244 (609)
T KOG4227|consen 196 -N--FYTAEFHPETPALILVNSETGGPNVFDRRMQ--AR----------------PVYQRSMF----------KGLPQEN 244 (609)
T ss_pred -c--ceeeeecCCCceeEEeccccCCCCceeeccc--cc----------------hHHhhhcc----------ccCcccc
Confidence 1 12233444 88887754 4667764211 10 00000000 0000000
Q ss_pred cccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEE-EEeccC-------CCCeEEEEECCCCCEEEEEEc
Q 002778 206 QELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII-SQFKAH-------TSPISALCFDPSGTLLVTASV 277 (882)
Q Consensus 206 ~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v-~~f~aH-------~spIsaLaFSPdGtlLATAS~ 277 (882)
.+. -.+.+++++ .+.+++ ..----.+||+.+.++. -++. | ...|.+++|--|-+ +||+|.
T Consensus 245 ~~~----M~~~~~~~G-~Q~msi-----RR~~~P~~~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F~~D~~-v~tGSD 312 (609)
T KOG4227|consen 245 TEW----MGSLWSPSG-NQFMSI-----RRGKCPLYFDFISQRCFVLKSD-HNPNGYCNIKTIKSMTFIDDYT-VATGSD 312 (609)
T ss_pred hhh----hheeeCCCC-Ceehhh-----hccCCCEEeeeecccceeEecc-CCCCcceeeeeeeeeeeeccee-eeccCc
Confidence 000 001112211 111111 00111246888875543 3332 3 23577889987755 889887
Q ss_pred CCCEEEEEecCCCcccCCCCCCcccc---CCc--ccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEEC
Q 002778 278 YGNNINIFRIMPSCMRSGSGNHKYDW---NSS--HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 348 (882)
Q Consensus 278 dGt~IrVWdi~p~~~~~~sG~~~~d~---sss--~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI 348 (882)
+ -.|.+|.+-...-..|-...+-|- .+. ...-....||+. ..+..|.|+|....|++++-...++||.-
T Consensus 313 ~-~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHR-Sv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 313 H-WGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHR-SVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred c-cceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccc-ccccceeecCCcceEeccchhhheecccc
Confidence 4 559999994321111100000000 000 112234457865 57889999999999999999999999964
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0022 Score=44.37 Aligned_cols=39 Identities=31% Similarity=0.681 Sum_probs=33.6
Q ss_pred CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEe
Q 002778 247 RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFR 286 (882)
Q Consensus 247 ~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWd 286 (882)
++.+..+.+|...|.+++|++++.++++++.+|. +++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~-~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGT-IKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCe-EEEcC
Confidence 3456778889999999999999999999999775 89996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.014 Score=66.18 Aligned_cols=99 Identities=9% Similarity=0.005 Sum_probs=75.0
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEc---------CCCEEEEEecCCCcccCCCCCCccccCCc
Q 002778 236 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV---------YGNNINIFRIMPSCMRSGSGNHKYDWNSS 306 (882)
Q Consensus 236 dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~---------dGt~IrVWdi~p~~~~~~sG~~~~d~sss 306 (882)
.|.|.|.|..+++.+.++..-..|-- + +||||+.|..|.. +...|.|||+.+ +
T Consensus 26 ~~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t-------~--------- 87 (352)
T TIGR02658 26 TTQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT-------H--------- 87 (352)
T ss_pred CceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECcc-------C---------
Confidence 38999999999999999986655543 4 9999999988877 666799999975 2
Q ss_pred ccEEEEEEeccc-----CCcEEEEEEccCCCEEEEEe-C-CCeEEEEECCCCCC
Q 002778 307 HVHLYKLHRGIT-----SATIQDICFSHYSQWIAIVS-S-KGTCHVFVLSPFGG 353 (882)
Q Consensus 307 ~~~l~~L~RG~t-----~a~I~sLaFSPDg~~LAsgS-~-DGTVhIWdI~~~gg 353 (882)
..+.++.-|-. ...-..+++||||++|.+.. + +..|.|.|+....-
T Consensus 88 -~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kv 140 (352)
T TIGR02658 88 -LPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAF 140 (352)
T ss_pred -cEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcE
Confidence 34455542211 11235799999999999887 4 78999999987643
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.45 Score=53.13 Aligned_cols=98 Identities=22% Similarity=0.300 Sum_probs=62.7
Q ss_pred ceEEEEECCCCcEEEE--ec--cCCCCeEEEEECCCCCEEEEEEcCCC------EEEEEecCCCcccCCCCCCccccCCc
Q 002778 237 GIVVVKDFVTRAIISQ--FK--AHTSPISALCFDPSGTLLVTASVYGN------NINIFRIMPSCMRSGSGNHKYDWNSS 306 (882)
Q Consensus 237 G~V~VWDl~s~~~v~~--f~--aH~spIsaLaFSPdGtlLATAS~dGt------~IrVWdi~p~~~~~~sG~~~~d~sss 306 (882)
-.+...|..+|+++.+ +. -|.-.|.-|+++++|+.++-.-..|- .+-+|+- |. .
T Consensus 138 psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~---------g~-------~ 201 (305)
T PF07433_consen 138 PSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR---------GG-------A 201 (305)
T ss_pred CceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC---------CC-------c
Confidence 3466778889988877 52 38889999999999988776544442 1112221 10 0
Q ss_pred ccEEEEE----EecccCCcEEEEEEccCCCEEEEEeCC-CeEEEEECCCCC
Q 002778 307 HVHLYKL----HRGITSATIQDICFSHYSQWIAIVSSK-GTCHVFVLSPFG 352 (882)
Q Consensus 307 ~~~l~~L----~RG~t~a~I~sLaFSPDg~~LAsgS~D-GTVhIWdI~~~g 352 (882)
..+..+ .+.+. .-|-||+|+.|+.++|++|-+ |.+.+||..+..
T Consensus 202 -~~~~~~p~~~~~~l~-~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~ 250 (305)
T PF07433_consen 202 -LRLLPAPEEQWRRLN-GYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGR 250 (305)
T ss_pred -ceeccCChHHHHhhC-CceEEEEEeCCCCEEEEECCCCCEEEEEECCCCC
Confidence 011110 01111 258899999999999888755 679999987653
|
|
| >KOG4415 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0011 Score=67.83 Aligned_cols=41 Identities=22% Similarity=0.514 Sum_probs=36.9
Q ss_pred ccCCCCccccceeeeeeeeEEeccCCc-cccccceeEEEEcCC
Q 002778 567 KNCSVKSYERSHWYLSNAEVQMSSGRL-PIWQSSKISFFKMDS 608 (882)
Q Consensus 567 ~~~~~~~~e~~~~yls~aEvq~~~~~~-piW~~~~i~F~~m~~ 608 (882)
+..++..+|+..| |+.+|+.||.+++ .|||+|||+|+.+..
T Consensus 17 laadh~GdEDeeW-l~hVEi~Th~gPHRriWmGPQFef~eih~ 58 (247)
T KOG4415|consen 17 LAADHIGDEDEEW-LPHVEIRTHLGPHRRIWMGPQFEFFEIHE 58 (247)
T ss_pred ccccccCcccccc-ccceEEEeccCccceeeecCceeEEEecC
Confidence 3457778999999 9999999999996 999999999999876
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.11 Score=60.10 Aligned_cols=131 Identities=21% Similarity=0.295 Sum_probs=76.2
Q ss_pred cccccccccCccCCCC-Cccc-ccC-CeEEEEECCCCeEEEEEEcCCcEEEEEEcC--CEEEEEEC-CeEEEEECCCCce
Q 002778 38 RSHLGGVRDGMMDSQS-GNCV-NSP-TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLA-TQIYCFDALTLEN 111 (882)
Q Consensus 38 ~~~~~~v~~~~~~~~~-~~~~-~sp-~tVrlWDlkTG~~V~tLkf~s~V~sV~~S~--rlLAV~~d-~qI~IWDa~T~e~ 111 (882)
.++-++||-.+....+ +-.+ ..+ ..|-|||..+|+.-+-.+--+.|.+|..++ +.++++.+ .+|.+.|+.++..
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv 435 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV 435 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe
Confidence 3666667443332222 1111 123 489999999988555545557899999876 56777765 3688889999874
Q ss_pred eEEEecCCCcccCCCCcccccccceeeEEcC--cEEEEeC------CCeEeccC-CCCC--CccCCCCCCCCCcCCCCCc
Q 002778 112 KFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYAS------NTLLLSNS-GRLS--PQNLTPSGVSPSTSPGGSS 180 (882)
Q Consensus 112 l~tL~t~p~p~~~~~~~~g~~~~~g~lAlsp--R~LAyss------~~v~lwdt-G~vs--~q~lt~~~vs~s~SP~~Gs 180 (882)
. .+..... + ....++++| ||+||+- ..+++.+. |+-. ..+-+....+|++-|++..
T Consensus 436 ~-~idkS~~------~------lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ry 502 (668)
T COG4946 436 R-LIDKSEY------G------LITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRY 502 (668)
T ss_pred e-Eeccccc------c------eeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcE
Confidence 2 2221110 1 134567777 9999973 24566664 2111 1222224678888776654
Q ss_pred c
Q 002778 181 L 181 (882)
Q Consensus 181 l 181 (882)
|
T Consensus 503 L 503 (668)
T COG4946 503 L 503 (668)
T ss_pred E
Confidence 3
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.11 Score=61.02 Aligned_cols=101 Identities=13% Similarity=0.237 Sum_probs=73.9
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEE-EcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEe
Q 002778 237 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTA-SVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 315 (882)
Q Consensus 237 G~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATA-S~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~R 315 (882)
.++.+.++....++..+. -.+||.++.|+|+|+-+|.. +--=-.+-|||+. | ..++.|-.
T Consensus 251 q~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr--------~----------~~v~df~e 311 (566)
T KOG2315|consen 251 QTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR--------G----------KPVFDFPE 311 (566)
T ss_pred ceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCC--------C----------CEeEeCCC
Confidence 467777777444544444 46899999999999877654 3222357899985 3 47777765
Q ss_pred cccCCcEEEEEEccCCCEEEEEeC---CCeEEEEECCCCCCccccccc
Q 002778 316 GITSATIQDICFSHYSQWIAIVSS---KGTCHVFVLSPFGGDSGFQTL 360 (882)
Q Consensus 316 G~t~a~I~sLaFSPDg~~LAsgS~---DGTVhIWdI~~~gg~~~l~~H 360 (882)
|-. .++-|||.|++|+.++. .|.+-|||+...+....+..-
T Consensus 312 gpR----N~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~ 355 (566)
T KOG2315|consen 312 GPR----NTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA 355 (566)
T ss_pred CCc----cceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC
Confidence 533 56889999999999876 589999999988777665543
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.012 Score=65.64 Aligned_cols=79 Identities=20% Similarity=0.294 Sum_probs=54.4
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEE---ec-----ccCCcE---EEE
Q 002778 257 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH---RG-----ITSATI---QDI 325 (882)
Q Consensus 257 ~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~---RG-----~t~a~I---~sL 325 (882)
.+.|+.+.|+++|++++|-+. - +++|||+... . + ....+.++ |. ..+..| ..+
T Consensus 272 IsSISDvKFs~sGryilsRDy-l-tvk~wD~nme-~----~---------pv~t~~vh~~lr~kLc~lYEnD~IfdKFec 335 (433)
T KOG1354|consen 272 ISSISDVKFSHSGRYILSRDY-L-TVKLWDLNME-A----K---------PVETYPVHEYLRSKLCSLYENDAIFDKFEC 335 (433)
T ss_pred hhhhhceEEccCCcEEEEecc-c-eeEEEecccc-C----C---------cceEEeehHhHHHHHHHHhhccchhheeEE
Confidence 457889999999999999876 3 5999999432 0 0 01122211 00 001112 458
Q ss_pred EEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 326 CFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 326 aFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
+||-++.++++||-..-+|+|++..+
T Consensus 336 ~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 336 SWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred EEcCCcceEecccccceEEEecCCCC
Confidence 99999999999999999999997653
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.23 Score=55.71 Aligned_cols=108 Identities=16% Similarity=0.261 Sum_probs=65.1
Q ss_pred CceEEEEECCCC----cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEE
Q 002778 236 AGIVVVKDFVTR----AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 236 dG~V~VWDl~s~----~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~ 311 (882)
.|.|..|++... +.+.........-..|+++|+|++|++|...+..|.+|++... |.. .....+.
T Consensus 61 ~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~------g~l-----~~~~~~~ 129 (345)
T PF10282_consen 61 SGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDD------GSL-----GEVVQTV 129 (345)
T ss_dssp TTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTT------SEE-----EEEEEEE
T ss_pred CCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCC------ccc-----ceeeeec
Confidence 455666665442 2334444333445679999999999999877778999999642 200 0000111
Q ss_pred EEE-ecc-----cCCcEEEEEEccCCCEEEEEeC-CCeEEEEECCCCCCc
Q 002778 312 KLH-RGI-----TSATIQDICFSHYSQWIAIVSS-KGTCHVFVLSPFGGD 354 (882)
Q Consensus 312 ~L~-RG~-----t~a~I~sLaFSPDg~~LAsgS~-DGTVhIWdI~~~gg~ 354 (882)
... .|. ......++.|+||+++|.+... ...|++|+++..++.
T Consensus 130 ~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~ 179 (345)
T PF10282_consen 130 RHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGK 179 (345)
T ss_dssp ESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-T
T ss_pred ccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCce
Confidence 110 011 1235789999999999988753 347999999876543
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.035 Score=64.03 Aligned_cols=97 Identities=22% Similarity=0.288 Sum_probs=71.8
Q ss_pred cCCCc-eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEE
Q 002778 233 MDNAG-IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 233 gs~dG-~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~ 311 (882)
|..|| .+-|+|..+++ +..+...-+.|.+|..+|||++++.|-.... |-+.|+.+ |. ..+.
T Consensus 377 gt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK~~vvaNdr~e-l~vididn-------gn---------v~~i 438 (668)
T COG4946 377 GTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGKKVVVANDRFE-LWVIDIDN-------GN---------VRLI 438 (668)
T ss_pred eccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCcEEEEEcCceE-EEEEEecC-------CC---------eeEe
Confidence 45677 78999998876 4566667789999999999999988876543 66777754 31 1222
Q ss_pred EEEecccCCcEEEEEEccCCCEEEEEeCCC----eEEEEECCC
Q 002778 312 KLHRGITSATIQDICFSHYSQWIAIVSSKG----TCHVFVLSP 350 (882)
Q Consensus 312 ~L~RG~t~a~I~sLaFSPDg~~LAsgS~DG----TVhIWdI~~ 350 (882)
.-. .-+.|.+++|+|+++|||-+=-+| .|||||+..
T Consensus 439 dkS---~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 439 DKS---EYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred ccc---ccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 211 124799999999999999876554 699999975
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.026 Score=63.64 Aligned_cols=103 Identities=13% Similarity=0.073 Sum_probs=80.1
Q ss_pred ccCCCceEEEEECCC------CcEEEEec-cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccC
Q 002778 232 DMDNAGIVVVKDFVT------RAIISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWN 304 (882)
Q Consensus 232 tgs~dG~V~VWDl~s------~~~v~~f~-aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~s 304 (882)
+|+.|-.++||.+.. .+.+.... .|.+.|.+|+|+-..++|.++..+|+ +.+.|+.+.
T Consensus 73 SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~-VI~HDiEt~-------------- 137 (609)
T KOG4227|consen 73 SGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT-VIKHDIETK-------------- 137 (609)
T ss_pred ecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce-eEeeecccc--------------
Confidence 567889999999853 23443332 46789999999999999999999887 458899642
Q ss_pred CcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCC
Q 002778 305 SSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 352 (882)
Q Consensus 305 ss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~g 352 (882)
..++.+........|+.+.-+|-...|++++.++-|-+||+....
T Consensus 138 ---qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~ 182 (609)
T KOG4227|consen 138 ---QSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ 182 (609)
T ss_pred ---eeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCC
Confidence 355665433333469999999999999999999999999997654
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.015 Score=68.44 Aligned_cols=90 Identities=16% Similarity=0.163 Sum_probs=66.9
Q ss_pred EEEECCCCcE--EEEe-ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEec
Q 002778 240 VVKDFVTRAI--ISQF-KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 316 (882)
Q Consensus 240 ~VWDl~s~~~--v~~f-~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG 316 (882)
.+|+....+. ++.. -.+.+.|.+.+++|+.++|+.|..||. |.+||... + +..+-+.
T Consensus 239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgS-iiLyD~~~-------~------------~t~~~ka 298 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGS-IILYDTTR-------G------------VTLLAKA 298 (545)
T ss_pred EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCe-EEEEEcCC-------C------------eeeeeee
Confidence 4677654432 2211 257889999999999999999999886 88999854 1 1111111
Q ss_pred ccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 317 ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 317 ~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
.-....++|+|||..+++|+..|.+.+||+.-.
T Consensus 299 --~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 299 --EFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred --cccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 124688999999999999999999999999754
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.2 Score=58.94 Aligned_cols=96 Identities=10% Similarity=0.202 Sum_probs=63.5
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC--CCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEe
Q 002778 238 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY--GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 315 (882)
Q Consensus 238 ~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~d--Gt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~R 315 (882)
.+.|+.+....+......-..+|-+.+|.|.|..+|+-+.. ..++.+|.+... + ....++.+|..
T Consensus 426 n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~------~-------~~~~lVk~~dk 492 (698)
T KOG2314|consen 426 NLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETN------I-------KKPSLVKELDK 492 (698)
T ss_pred eEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecC------C-------Cchhhhhhhcc
Confidence 35666666554333333346789999999999999887643 345778887531 0 11134444432
Q ss_pred cccCCcEEEEEEccCCCEEEEE---eCCCeEEEEECCC
Q 002778 316 GITSATIQDICFSHYSQWIAIV---SSKGTCHVFVLSP 350 (882)
Q Consensus 316 G~t~a~I~sLaFSPDg~~LAsg---S~DGTVhIWdI~~ 350 (882)
..-+.|-|||.|+|++++ |..|++..+|.+-
T Consensus 493 ----~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 493 ----KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred ----cccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence 124779999999999876 4578999999874
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.72 Score=59.57 Aligned_cols=87 Identities=15% Similarity=0.071 Sum_probs=51.9
Q ss_pred eEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEe--cc----cCCcEEEEEEccCCCE
Q 002778 260 ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR--GI----TSATIQDICFSHYSQW 333 (882)
Q Consensus 260 IsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~R--G~----t~a~I~sLaFSPDg~~ 333 (882)
...|+|+|+|+.|..+....+.|++||+......-..| .+.. ....++.+-. |. .-..-..|+|++||+.
T Consensus 742 P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~g---g~~~-~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~L 817 (1057)
T PLN02919 742 PSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAG---GDPT-FSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQI 817 (1057)
T ss_pred ccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEe---cccc-cCcccccccCCCCchhhhhccCCceeeEeCCCcE
Confidence 45799999999777777667789999985310000000 0000 0000111100 00 0012368999999999
Q ss_pred EEEEeCCCeEEEEECCC
Q 002778 334 IAIVSSKGTCHVFVLSP 350 (882)
Q Consensus 334 LAsgS~DGTVhIWdI~~ 350 (882)
+++-+.+++|++||...
T Consensus 818 YVADs~N~rIrviD~~t 834 (1057)
T PLN02919 818 YVADSYNHKIKKLDPAT 834 (1057)
T ss_pred EEEECCCCEEEEEECCC
Confidence 99999999999999864
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.015 Score=69.55 Aligned_cols=57 Identities=18% Similarity=0.380 Sum_probs=45.9
Q ss_pred ccCCCceEEEEECCCC--cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCC
Q 002778 232 DMDNAGIVVVKDFVTR--AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP 289 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~--~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p 289 (882)
+++.+|.+.|||+... ..+...+.+......+.|+++|++||.|+..|+ |.+|++.+
T Consensus 459 ~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~-~~~~~l~~ 517 (555)
T KOG1587|consen 459 TVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGT-THILKLSE 517 (555)
T ss_pred EEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCc-EEEEEcCc
Confidence 3577999999999643 455666666777788899999999999999886 89999954
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.92 Score=50.91 Aligned_cols=59 Identities=15% Similarity=0.020 Sum_probs=43.1
Q ss_pred cCCeEEEEECCCCeEEEEEEcCCcEEEE-EEcCCEEEE-EECCeEEEEECCCCceeEEEec
Q 002778 59 SPTAVRFYSFQSHCYEHVLRFRSSVCMV-RCSPRIVAV-GLATQIYCFDALTLENKFSVLT 117 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLkf~s~V~sV-~~S~rlLAV-~~d~qI~IWDa~T~e~l~tL~t 117 (882)
.++.|.-+|.++|+.+........+.+. ....+.|.+ ..++.|+.||+.+++.+++...
T Consensus 113 ~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 173 (377)
T TIGR03300 113 EKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSR 173 (377)
T ss_pred CCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEcc
Confidence 4578999999999999888766655431 223344444 4577899999999998888754
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.014 Score=67.89 Aligned_cols=92 Identities=16% Similarity=0.161 Sum_probs=59.9
Q ss_pred CceEEEEECCCCcEEEEecc-----CCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEE
Q 002778 236 AGIVVVKDFVTRAIISQFKA-----HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 310 (882)
Q Consensus 236 dG~V~VWDl~s~~~v~~f~a-----H~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l 310 (882)
..+|+++|..+..-...++- ...-+.+++.-|.|++||.|=..|. |-+-|... | .+
T Consensus 850 eSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGc-i~~LDaR~-------G-----------~v 910 (1034)
T KOG4190|consen 850 ESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGC-IAILDARN-------G-----------KV 910 (1034)
T ss_pred hhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCc-EEEEecCC-------C-----------ce
Confidence 45788888887765555542 3345889999999999999876675 77888864 3 11
Q ss_pred EEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEE-EEC
Q 002778 311 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHV-FVL 348 (882)
Q Consensus 311 ~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhI-WdI 348 (882)
..-.|-+. +....++ .|..+.||.+-.|.++-| |--
T Consensus 911 INswrpme-cdllqla-apsdq~L~~saldHslaVnWha 947 (1034)
T KOG4190|consen 911 INSWRPME-CDLLQLA-APSDQALAQSALDHSLAVNWHA 947 (1034)
T ss_pred eccCCccc-chhhhhc-CchhHHHHhhcccceeEeeehh
Confidence 11112222 2222233 366788888888888888 743
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.48 Score=52.33 Aligned_cols=95 Identities=13% Similarity=0.174 Sum_probs=60.4
Q ss_pred CceEEEEECCCCc-EEE--EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEE
Q 002778 236 AGIVVVKDFVTRA-IIS--QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 312 (882)
Q Consensus 236 dG~V~VWDl~s~~-~v~--~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~ 312 (882)
.+.|.+|++...+ .+. .+..+ ..|.+|.. -+.+++.++.... +.++..... + ..+..
T Consensus 106 g~~l~v~~l~~~~~l~~~~~~~~~-~~i~sl~~--~~~~I~vgD~~~s-v~~~~~~~~------~----------~~l~~ 165 (321)
T PF03178_consen 106 GNKLYVYDLDNSKTLLKKAFYDSP-FYITSLSV--FKNYILVGDAMKS-VSLLRYDEE------N----------NKLIL 165 (321)
T ss_dssp TTEEEEEEEETTSSEEEEEEE-BS-SSEEEEEE--ETTEEEEEESSSS-EEEEEEETT------T----------E-EEE
T ss_pred cCEEEEEEccCcccchhhheecce-EEEEEEec--cccEEEEEEcccC-EEEEEEEcc------C----------CEEEE
Confidence 3567788877666 332 22222 24444443 3668888887555 667755321 1 34666
Q ss_pred EEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 002778 313 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 350 (882)
Q Consensus 313 L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~ 350 (882)
+.|......+.++.|-+|++.++++..+|.+++|..++
T Consensus 166 va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 166 VARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred EEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 66655556799999987778999999999999999865
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.77 Score=51.53 Aligned_cols=89 Identities=15% Similarity=0.144 Sum_probs=51.4
Q ss_pred CCceEEEEECCCCcEEEEeccC-CCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEE
Q 002778 235 NAGIVVVKDFVTRAIISQFKAH-TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 313 (882)
Q Consensus 235 ~dG~V~VWDl~s~~~v~~f~aH-~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L 313 (882)
.+|.|..+|..+++.+...... .....+... .|.+|.+++.+|. |.+||..+ | ..++++
T Consensus 287 ~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~-l~~~d~~t-------G----------~~~~~~ 346 (377)
T TIGR03300 287 ADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGY-LHWLSRED-------G----------SFVARL 346 (377)
T ss_pred CCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCE-EEEEECCC-------C----------CEEEEE
Confidence 4677888888888766544211 111122122 3667888888775 88999754 4 355555
Q ss_pred EecccCCcEEEEEEccCCCEEEEEeCCCeEEEE
Q 002778 314 HRGITSATIQDICFSHYSQWIAIVSSKGTCHVF 346 (882)
Q Consensus 314 ~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIW 346 (882)
.-+.. ....+.++. ++ .|..++.||+++.|
T Consensus 347 ~~~~~-~~~~sp~~~-~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 347 KTDGS-GIASPPVVV-GD-GLLVQTRDGDLYAF 376 (377)
T ss_pred EcCCC-ccccCCEEE-CC-EEEEEeCCceEEEe
Confidence 42211 112222333 33 57788999999876
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=95.73 E-value=1.3 Score=48.86 Aligned_cols=117 Identities=14% Similarity=0.206 Sum_probs=66.6
Q ss_pred CCceEEEEECCC-----CcEEEEe--cc-CCCCeEEEEECCCCCEEEEEEcCC-C---------EEEEEecCCCcc--c-
Q 002778 235 NAGIVVVKDFVT-----RAIISQF--KA-HTSPISALCFDPSGTLLVTASVYG-N---------NINIFRIMPSCM--R- 293 (882)
Q Consensus 235 ~dG~V~VWDl~s-----~~~v~~f--~a-H~spIsaLaFSPdGtlLATAS~dG-t---------~IrVWdi~p~~~--~- 293 (882)
..|.++-|-+.. .+.-..| .. +...|.++.++|.-++|..|+... . -+--|++..... .
T Consensus 117 Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~ 196 (282)
T PF15492_consen 117 YRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQ 196 (282)
T ss_pred ccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEE
Confidence 456666555422 2223333 33 467899999999988887765421 1 256788754210 0
Q ss_pred CCCCCCccccCCcccEEEE-----E--EecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 294 SGSGNHKYDWNSSHVHLYK-----L--HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 294 ~~sG~~~~d~sss~~~l~~-----L--~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
-........-......+.+ + +++.....|..|+.||||+.||+.+.+|.+-||+|...
T Consensus 197 v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 197 VTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred ccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 0000000000000001111 1 12333457999999999999999999999999999654
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.064 Score=58.96 Aligned_cols=103 Identities=17% Similarity=0.152 Sum_probs=72.0
Q ss_pred CCCceEEEEECCCCcE--EEEeccCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEE
Q 002778 234 DNAGIVVVKDFVTRAI--ISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 310 (882)
Q Consensus 234 s~dG~V~VWDl~s~~~--v~~f~aH~spIsaLaFSPdG-tlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l 310 (882)
..+|.+.+.+.....+ ++.+++|.-+++-..|+... +++.||+.||. +.-||+.-. + ..+
T Consensus 140 ~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~-l~~~D~R~p------~----------~~i 202 (339)
T KOG0280|consen 140 DSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGS-LSCWDIRIP------K----------TFI 202 (339)
T ss_pred cCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCce-EEEEEecCC------c----------cee
Confidence 3456666555544433 45889999999999998754 57888998775 899999721 1 122
Q ss_pred EEEEecccCCcEEEEEEcc-CCCEEEEEeCCCeEEEEECCCCCCc
Q 002778 311 YKLHRGITSATIQDICFSH-YSQWIAIVSSKGTCHVFVLSPFGGD 354 (882)
Q Consensus 311 ~~L~RG~t~a~I~sLaFSP-Dg~~LAsgS~DGTVhIWdI~~~gg~ 354 (882)
+.-.+-++ +-|.+|.=|| +..+|++|+-|.++|+||....+.+
T Consensus 203 ~~n~kvH~-~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP 246 (339)
T KOG0280|consen 203 WHNSKVHT-SGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP 246 (339)
T ss_pred eecceeee-cceEEEecCCCCCceEEEeccccceeeeehhcccCc
Confidence 22112222 4578887774 6789999999999999999876554
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.032 Score=63.24 Aligned_cols=96 Identities=25% Similarity=0.254 Sum_probs=74.7
Q ss_pred EEEEECCCCcEEEEeccCCCCeEEEEECCCCC-EEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecc
Q 002778 239 VVVKDFVTRAIISQFKAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI 317 (882)
Q Consensus 239 V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGt-lLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~ 317 (882)
|++.+-.+.+....+..|...|..|+|||... +|..|+. |..|+|+|+.+.+ .+..|...
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl-~nkiki~dlet~~---------------~vssy~a~--- 235 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASL-GNKIKIMDLETSC---------------VVSSYIAY--- 235 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeecc-CceEEEEecccce---------------eeeheecc---
Confidence 78888877777777888999999999999888 7778888 7789999997521 12334432
Q ss_pred cCCcEEEEEEccCCC-EEEEEeCCCeEEEEECCCCCCcc
Q 002778 318 TSATIQDICFSHYSQ-WIAIVSSKGTCHVFVLSPFGGDS 355 (882)
Q Consensus 318 t~a~I~sLaFSPDg~-~LAsgS~DGTVhIWdI~~~gg~~ 355 (882)
+.||+++|.-|.. +|-+|-.+|.|.|||+....++.
T Consensus 236 --~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~ 272 (463)
T KOG1645|consen 236 --NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPL 272 (463)
T ss_pred --CCceeeeeccCCcceeEEeccCceEEEEEccCCCchH
Confidence 4699999998875 56677789999999998765543
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.17 Score=55.27 Aligned_cols=103 Identities=12% Similarity=0.039 Sum_probs=67.5
Q ss_pred CCCceEEEEECCCC--cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEE
Q 002778 234 DNAGIVVVKDFVTR--AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 234 s~dG~V~VWDl~s~--~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~ 311 (882)
+.|.++++.++.-+ +....+.. -.+..++.|+|++++++.+. -..|..|.+... + . .++.
T Consensus 135 sndht~k~~~~~~~s~~~~~h~~~--~~~ns~~~snd~~~~~~Vgd-s~~Vf~y~id~~------s--------e-y~~~ 196 (344)
T KOG4532|consen 135 SNDHTGKTMVVSGDSNKFAVHNQN--LTQNSLHYSNDPSWGSSVGD-SRRVFRYAIDDE------S--------E-YIEN 196 (344)
T ss_pred cCCcceeEEEEecCcccceeeccc--cceeeeEEcCCCceEEEecC-CCcceEEEeCCc------c--------c-eeee
Confidence 45666666666533 32222222 22789999999999999876 344677777431 1 1 2222
Q ss_pred EEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCcc
Q 002778 312 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS 355 (882)
Q Consensus 312 ~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~ 355 (882)
.+...+...=.+.+||..+..+|+++-||++-|||+...+.+.
T Consensus 197 -~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm 239 (344)
T KOG4532|consen 197 -IYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPM 239 (344)
T ss_pred -eEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccch
Confidence 2222222334678999999999999999999999998766554
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.075 Score=69.17 Aligned_cols=118 Identities=13% Similarity=0.177 Sum_probs=85.4
Q ss_pred ccCCCceEEEEECCCCcEEEEec-cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCccc-----C-----------
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR-----S----------- 294 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~-aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~-----~----------- 294 (882)
+|++||.|++|.-..++.+..++ +-.+.|+.+.|+.+|.....+..||. +-+|.+.|-+.- +
T Consensus 2225 tgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~-l~l~q~~pk~~~s~qchnk~~~Df~Fi~s 2303 (2439)
T KOG1064|consen 2225 TGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGD-LSLWQASPKPYTSWQCHNKALSDFRFIGS 2303 (2439)
T ss_pred ecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCc-eeecccCCcceeccccCCccccceeeeeh
Confidence 67899999999999998888776 34488999999999999999988775 899999763210 0
Q ss_pred ---CCC-----CCccccCCcc----cEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCc
Q 002778 295 ---GSG-----NHKYDWNSSH----VHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD 354 (882)
Q Consensus 295 ---~sG-----~~~~d~sss~----~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~ 354 (882)
..| .....|.+.. ..+.+ - +...++++++-|.-+.|.+|+.+|.|.|||+....-.
T Consensus 2304 ~~~tag~s~d~~n~~lwDtl~~~~~s~v~~---~-H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~ 2371 (2439)
T KOG1064|consen 2304 LLATAGRSSDNRNVCLWDTLLPPMNSLVHT---C-HDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLR 2371 (2439)
T ss_pred hhhccccCCCCCcccchhcccCcccceeee---e-cCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHH
Confidence 000 0112232211 12221 1 2235789999999999999999999999999865443
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.037 Score=38.00 Aligned_cols=28 Identities=21% Similarity=0.440 Sum_probs=26.2
Q ss_pred CcEEEEEEccCCCEEEEEeCCCeEEEEE
Q 002778 320 ATIQDICFSHYSQWIAIVSSKGTCHVFV 347 (882)
Q Consensus 320 a~I~sLaFSPDg~~LAsgS~DGTVhIWd 347 (882)
..|.+++|.++++++++++.|+++++|+
T Consensus 13 ~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 13 GPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred CceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4799999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.18 Score=60.86 Aligned_cols=107 Identities=18% Similarity=0.190 Sum_probs=59.1
Q ss_pred cCCCceEEEEECCCCc-EEEEeccCCCCeEEEEECCCCCEEEE-EEcCCCEEEEEecCCCcccCCCCCCccccC--Cccc
Q 002778 233 MDNAGIVVVKDFVTRA-IISQFKAHTSPISALCFDPSGTLLVT-ASVYGNNINIFRIMPSCMRSGSGNHKYDWN--SSHV 308 (882)
Q Consensus 233 gs~dG~V~VWDl~s~~-~v~~f~aH~spIsaLaFSPdGtlLAT-AS~dGt~IrVWdi~p~~~~~~sG~~~~d~s--ss~~ 308 (882)
.+.||+|+.||...-. .-........||.--+|-|=|.-..+ -...|..+.+.+-.... ..|. .-.+
T Consensus 220 ~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d---------~e~n~~~~~~ 290 (1081)
T KOG0309|consen 220 SSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSD---------LEWNVFDLNT 290 (1081)
T ss_pred cCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchh---------hhhccccCCc
Confidence 3679999999986432 12233344678888888886653322 23323334444432210 0010 0113
Q ss_pred EEEEEEecccCCcEEEEEEcc--------CC--CEEEEEeCCCeEEEEECCC
Q 002778 309 HLYKLHRGITSATIQDICFSH--------YS--QWIAIVSSKGTCHVFVLSP 350 (882)
Q Consensus 309 ~l~~L~RG~t~a~I~sLaFSP--------Dg--~~LAsgS~DGTVhIWdI~~ 350 (882)
.+++|. ||+. .|...-|-. |. --|++-|.|.++++|.|..
T Consensus 291 pVh~F~-GH~D-~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 291 PVHTFV-GHDD-VVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred ceeeec-Ccch-HHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 556663 6653 344443432 33 2589999999999999964
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.15 Score=62.89 Aligned_cols=53 Identities=9% Similarity=0.019 Sum_probs=44.2
Q ss_pred CCeEEEEECCCCeEEEEEE-cCCcEEEEEEcCCEEEEEE-CC---------eEEEEECCCCcee
Q 002778 60 PTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSPRIVAVGL-AT---------QIYCFDALTLENK 112 (882)
Q Consensus 60 p~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~rlLAV~~-d~---------qI~IWDa~T~e~l 112 (882)
-++|-+-|.++-+.++++. |.+.|.++...+++|+++. .. -|+|||++.++.+
T Consensus 196 ~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral 259 (1118)
T KOG1275|consen 196 RGTVFLRDPNSFETIHTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL 259 (1118)
T ss_pred cceEEeecCCcCceeeeeeccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhcc
Confidence 4889999999999999998 8889999999998877654 22 2899999987654
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.038 Score=64.42 Aligned_cols=85 Identities=21% Similarity=0.303 Sum_probs=60.8
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEc
Q 002778 249 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS 328 (882)
Q Consensus 249 ~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFS 328 (882)
.+..|.+|+..|.+++--.+.+-+++||.|. ++++|.+++. +++-|+ + .+-++.. . +...|.+|.|-
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDK-TVKLWSik~E--gD~~~t------s--aCQfTY~-a-Hkk~i~~igfL 793 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDK-TVKLWSIKPE--GDEIGT------S--ACQFTYQ-A-HKKPIHDIGFL 793 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCc-eEEEEEeccc--cCcccc------c--eeeeEhh-h-ccCcccceeee
Confidence 3567889999999887666777888999855 5999999874 111111 1 1223321 2 23479999999
Q ss_pred cCCCEEEEEeCCCeEEEEEC
Q 002778 329 HYSQWIAIVSSKGTCHVFVL 348 (882)
Q Consensus 329 PDg~~LAsgS~DGTVhIWdI 348 (882)
.|-+++|++ ||-+|+||-
T Consensus 794 ~~lr~i~Sc--D~giHlWDP 811 (1034)
T KOG4190|consen 794 ADLRSIASC--DGGIHLWDP 811 (1034)
T ss_pred eccceeeec--cCcceeecc
Confidence 999998876 888999983
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.097 Score=56.80 Aligned_cols=114 Identities=18% Similarity=0.202 Sum_probs=70.3
Q ss_pred ccCCCceEEEEECCCCcE-EEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEecCCCccc-CCCCCCccccCCcc-
Q 002778 232 DMDNAGIVVVKDFVTRAI-ISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMR-SGSGNHKYDWNSSH- 307 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~-v~~f~aH~spIsaLaFSP-dGtlLATAS~dGt~IrVWdi~p~~~~-~~sG~~~~d~sss~- 307 (882)
.|..+|.|.|||..+... +..+++|+.+|+-+-|+| ++..|.|++.||. +--||....+.. +.....-..|-+..
T Consensus 197 cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGs-lw~wdas~~~l~i~~~~s~~s~WLsgD~ 275 (319)
T KOG4714|consen 197 CGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGS-LWHWDASTTFLSISNQASVISSWLSGDP 275 (319)
T ss_pred EecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCc-EEEEcCCCceEEecCccccccccccCCc
Confidence 467899999999998754 456789999999999999 5689999999887 557887532210 00000111121110
Q ss_pred -cEEEEEEecccCCcEEEE-EEccCCCEEEEEeCCCeEEEEE
Q 002778 308 -VHLYKLHRGITSATIQDI-CFSHYSQWIAIVSSKGTCHVFV 347 (882)
Q Consensus 308 -~~l~~L~RG~t~a~I~sL-aFSPDg~~LAsgS~DGTVhIWd 347 (882)
+-+.++ .+.-+....+| .|---|..|++|++-+-|.|++
T Consensus 276 v~s~i~i-~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 276 VKSRIEI-TSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred ccceEee-eccccccceeeeeeeccCceEEeccccceEEEec
Confidence 111111 12222222222 2445677899999988888864
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.93 Score=53.18 Aligned_cols=78 Identities=19% Similarity=0.338 Sum_probs=52.7
Q ss_pred CCceEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEE--cC---CCEEEEEecCCCcccCCCCCCccccCCccc
Q 002778 235 NAGIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTAS--VY---GNNINIFRIMPSCMRSGSGNHKYDWNSSHV 308 (882)
Q Consensus 235 ~dG~V~VWDl~s~~~v~-~f~aH~spIsaLaFSPdGtlLATAS--~d---Gt~IrVWdi~p~~~~~~sG~~~~d~sss~~ 308 (882)
.-|.|.|||....-.+. .|.+-.. +...|+|||.++-++- .. +..|+|||+. | .
T Consensus 338 l~gni~i~~~~~rf~~~~~~~~~n~--s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~--------g----------~ 397 (561)
T COG5354 338 LQGNIEIFDPAGRFKVAGAFNGLNT--SYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY--------G----------A 397 (561)
T ss_pred cccceEEeccCCceEEEEEeecCCc--eEeeccCCceEEEecCCCcccccCcceEEEEec--------C----------c
Confidence 34678899987664443 6665433 4467999999887663 22 5569999994 3 1
Q ss_pred EEEEEEecccCCcEEEEEEccCCCEEEEEeCCC
Q 002778 309 HLYKLHRGITSATIQDICFSHYSQWIAIVSSKG 341 (882)
Q Consensus 309 ~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DG 341 (882)
.+. ..+.+.|-|-+++.-++|...
T Consensus 398 ~~f---------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 398 KVF---------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred hhh---------hhhhccccCCcccceeeccCC
Confidence 222 234578888899998888776
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.21 Score=59.60 Aligned_cols=76 Identities=18% Similarity=0.302 Sum_probs=61.5
Q ss_pred CeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEE-ecccCCcE-EEEEEccCCCEEEE
Q 002778 259 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-RGITSATI-QDICFSHYSQWIAI 336 (882)
Q Consensus 259 pIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~-RG~t~a~I-~sLaFSPDg~~LAs 336 (882)
.|--+.|+|.-.++|++-.+|. +-+.++.- ++++.+. +|. .+ .+++|.|||+.||+
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~ge-lli~R~n~------------------qRlwtip~p~~---~v~~sL~W~~DGkllaV 79 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGE-LLIHRLNW------------------QRLWTIPIPGE---NVTASLCWRPDGKLLAV 79 (665)
T ss_pred ceEEEEEcCccchhheeccCCc-EEEEEecc------------------ceeEeccCCCC---ccceeeeecCCCCEEEE
Confidence 4667889999999999999887 55888742 4777775 443 34 59999999999999
Q ss_pred EeCCCeEEEEECCCCCCccc
Q 002778 337 VSSKGTCHVFVLSPFGGDSG 356 (882)
Q Consensus 337 gS~DGTVhIWdI~~~gg~~~ 356 (882)
|=.||||+|-|++.++....
T Consensus 80 g~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 80 GFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred EecCCeEEEEEccCCCceec
Confidence 99999999999998776654
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=93.56 E-value=11 Score=39.65 Aligned_cols=99 Identities=16% Similarity=0.156 Sum_probs=60.0
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEec
Q 002778 237 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 316 (882)
Q Consensus 237 G~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG 316 (882)
|.|..++.. ++....+ ..-..-+.|+|+|+|+.|..+......|..|++... +. .+ ...+.+..+..+
T Consensus 115 g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~------~~---~~-~~~~~~~~~~~~ 182 (246)
T PF08450_consen 115 GSVYRIDPD-GKVTVVA-DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDAD------GG---EL-SNRRVFIDFPGG 182 (246)
T ss_dssp EEEEEEETT-SEEEEEE-EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETT------TC---CE-EEEEEEEE-SSS
T ss_pred cceEEECCC-CeEEEEe-cCcccccceEECCcchheeecccccceeEEEecccc------cc---ce-eeeeeEEEcCCC
Confidence 567677766 4433322 233456899999999988766655666777777421 10 00 001122232211
Q ss_pred ccCCcEEEEEEccCCCEEEEEeCCCeEEEEECC
Q 002778 317 ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 349 (882)
Q Consensus 317 ~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~ 349 (882)
....-.+++..+|+..++.-..+.|.+|+-+
T Consensus 183 --~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 183 --PGYPDGLAVDSDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp --SCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred --CcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence 1236789999999988888888889998754
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.55 E-value=2.5 Score=46.54 Aligned_cols=57 Identities=16% Similarity=0.090 Sum_probs=39.8
Q ss_pred ccCCCceEEEEECCCCcEEE-----EeccCCCCeEEEEECCCCC--EEEEEEcCCCEEEEEecCC
Q 002778 232 DMDNAGIVVVKDFVTRAIIS-----QFKAHTSPISALCFDPSGT--LLVTASVYGNNINIFRIMP 289 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~-----~f~aH~spIsaLaFSPdGt--lLATAS~dGt~IrVWdi~p 289 (882)
.+.+||++-|||+....... +-..|.+.|....|++-|. +|.- ++.-.-+.|-|+.+
T Consensus 220 v~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~-sEhfs~~hv~D~R~ 283 (344)
T KOG4532|consen 220 VVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFI-SEHFSRVHVVDTRN 283 (344)
T ss_pred EEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEE-ecCcceEEEEEccc
Confidence 56899999999998765432 2235899999999998664 3332 33233477888864
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.13 Score=59.66 Aligned_cols=115 Identities=14% Similarity=0.162 Sum_probs=78.6
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEc
Q 002778 249 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS 328 (882)
Q Consensus 249 ~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFS 328 (882)
....|..|.+-|+.|-|+..|+.|+|+|.| ..|.|||-.. + ..+..+.-||.....+ -.|=
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD-~~vv~WdW~~-------~----------~~~l~f~SGH~~NvfQ-aKFi 194 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDD-LQVVVWDWVS-------G----------SPKLSFESGHCNNVFQ-AKFI 194 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCcc-ceEEeehhhc-------c----------Ccccccccccccchhh-hhcc
Confidence 456678899999999999999999999985 5688999753 2 2344455576654344 3365
Q ss_pred c--CCCEEEEEeCCCeEEEEECCCCCCcc---ccccccCCCCCCcccCCCCCCcccCCC
Q 002778 329 H--YSQWIAIVSSKGTCHVFVLSPFGGDS---GFQTLSSQGGDPYLFPVLSLPWWCTSS 382 (882)
Q Consensus 329 P--Dg~~LAsgS~DGTVhIWdI~~~gg~~---~l~~H~~~~~~~~~sp~~~lpw~~~s~ 382 (882)
| +.+.|++++.||-|++=.+...+... .+..|..++....+-|-...|.+..++
T Consensus 195 P~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~ge 253 (559)
T KOG1334|consen 195 PFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGE 253 (559)
T ss_pred CCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCccccccc
Confidence 5 45789999999999998886655443 345665555544555544444444444
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.14 Score=57.32 Aligned_cols=110 Identities=15% Similarity=0.163 Sum_probs=78.1
Q ss_pred CCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEE
Q 002778 234 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 313 (882)
Q Consensus 234 s~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L 313 (882)
+.+..|-|-|+++|. .+.|. ..+.|.|+.|.-.+.++..+...|. |.+.|+... + .| +.++...|
T Consensus 231 G~sqqv~L~nvetg~-~qsf~-sksDVfAlQf~~s~nLv~~GcRnge-I~~iDLR~r---n-qG--------~~~~a~rl 295 (425)
T KOG2695|consen 231 GLSQQVLLTNVETGH-QQSFQ-SKSDVFALQFAGSDNLVFNGCRNGE-IFVIDLRCR---N-QG--------NGWCAQRL 295 (425)
T ss_pred cccceeEEEEeeccc-ccccc-cchhHHHHHhcccCCeeEecccCCc-EEEEEeeec---c-cC--------CCcceEEE
Confidence 456678888888875 33444 5678999999999999998888776 889999642 1 11 22455555
Q ss_pred EecccCCcEEEEEEcc-CCCEEEEEeCCCeEEEEECCCCCC---cccccccc
Q 002778 314 HRGITSATIQDICFSH-YSQWIAIVSSKGTCHVFVLSPFGG---DSGFQTLS 361 (882)
Q Consensus 314 ~RG~t~a~I~sLaFSP-Dg~~LAsgS~DGTVhIWdI~~~gg---~~~l~~H~ 361 (882)
. ++..|+++..=. ++++|++++.+|+|.+||+...++ .....+|.
T Consensus 296 y---h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHv 344 (425)
T KOG2695|consen 296 Y---HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHV 344 (425)
T ss_pred E---cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccc
Confidence 4 334466655444 679999999999999999987776 44456664
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.51 Score=51.84 Aligned_cols=72 Identities=21% Similarity=0.271 Sum_probs=48.5
Q ss_pred EEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCe
Q 002778 263 LCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGT 342 (882)
Q Consensus 263 LaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGT 342 (882)
++.+.+|++||.-- ++.|-|=..++.+ ++- .......+. ..-.-+-|+||||+..||.+.+.||
T Consensus 3 ~~~~~~Gk~lAi~q--d~~iEiRsa~Ddf------------~si-~~kcqVpkD-~~PQWRkl~WSpD~tlLa~a~S~G~ 66 (282)
T PF15492_consen 3 LALSSDGKLLAILQ--DQCIEIRSAKDDF------------SSI-IGKCQVPKD-PNPQWRKLAWSPDCTLLAYAESTGT 66 (282)
T ss_pred eeecCCCcEEEEEe--ccEEEEEeccCCc------------hhe-eEEEecCCC-CCchheEEEECCCCcEEEEEcCCCe
Confidence 67889999998654 4567665555432 111 111122221 1124678999999999999999999
Q ss_pred EEEEECCC
Q 002778 343 CHVFVLSP 350 (882)
Q Consensus 343 VhIWdI~~ 350 (882)
|+|||+..
T Consensus 67 i~vfdl~g 74 (282)
T PF15492_consen 67 IRVFDLMG 74 (282)
T ss_pred EEEEeccc
Confidence 99999863
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.89 Score=53.85 Aligned_cols=81 Identities=16% Similarity=0.212 Sum_probs=57.7
Q ss_pred ceEEEEECCCCcEEEEeccCCC--CeE-EEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEE
Q 002778 237 GIVVVKDFVTRAIISQFKAHTS--PIS-ALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 313 (882)
Q Consensus 237 G~V~VWDl~s~~~v~~f~aH~s--pIs-aLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L 313 (882)
..+.|||+.+|...+.|..-.+ +++ -..||.|++++|--.. ..|.||+... -.++..
T Consensus 282 ~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~--~sisIyEtps------------------f~lld~ 341 (698)
T KOG2314|consen 282 QQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG--NSISIYETPS------------------FMLLDK 341 (698)
T ss_pred ceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc--ceEEEEecCc------------------eeeecc
Confidence 4699999999999888877333 222 4789999999987664 4589999831 122222
Q ss_pred EecccCCcEEEEEEccCCCEEEEEe
Q 002778 314 HRGITSATIQDICFSHYSQWIAIVS 338 (882)
Q Consensus 314 ~RG~t~a~I~sLaFSPDg~~LAsgS 338 (882)
+......|.+..|||-++.||--+
T Consensus 342 -Kslki~gIr~FswsP~~~llAYwt 365 (698)
T KOG2314|consen 342 -KSLKISGIRDFSWSPTSNLLAYWT 365 (698)
T ss_pred -cccCCccccCcccCCCcceEEEEc
Confidence 223334689999999998888654
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=92.95 E-value=13 Score=41.21 Aligned_cols=50 Identities=10% Similarity=0.195 Sum_probs=39.8
Q ss_pred CeEEEEECCCC-------eEEEEEEcCCcEEEEEEcCCEEEEEECCeEEEEECCCCc
Q 002778 61 TAVRFYSFQSH-------CYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLE 110 (882)
Q Consensus 61 ~tVrlWDlkTG-------~~V~tLkf~s~V~sV~~S~rlLAV~~d~qI~IWDa~T~e 110 (882)
+.|.++++.+. +.++..+++++|++|..-...|+++..++|++|++...+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSK 118 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEETTEEEEEEEETTS
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeecCEEEEEEccCcc
Confidence 78999999885 344445689999999876767888889999999988776
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=92.29 E-value=2.1 Score=45.18 Aligned_cols=97 Identities=26% Similarity=0.272 Sum_probs=60.6
Q ss_pred eEEEEECCCCcEEEEecc-----CCCCeEEEEECCCCCEEEEEEcCCCE-----EEEEecCCCcccCCCCCCccccCCcc
Q 002778 238 IVVVKDFVTRAIISQFKA-----HTSPISALCFDPSGTLLVTASVYGNN-----INIFRIMPSCMRSGSGNHKYDWNSSH 307 (882)
Q Consensus 238 ~V~VWDl~s~~~v~~f~a-----H~spIsaLaFSPdGtlLATAS~dGt~-----IrVWdi~p~~~~~~sG~~~~d~sss~ 307 (882)
.+.++|..+++....+.. .....+.++++|+|++.+|-+..... =+||.+.+. +
T Consensus 61 ~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~------~---------- 124 (246)
T PF08450_consen 61 GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD------G---------- 124 (246)
T ss_dssp CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT------S----------
T ss_pred ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC------C----------
Confidence 345669888864433332 23457889999999999887653210 247776541 1
Q ss_pred cEEEEEEecccCCcEEEEEEccCCCEEE-EEeCCCeEEEEECCCCCC
Q 002778 308 VHLYKLHRGITSATIQDICFSHYSQWIA-IVSSKGTCHVFVLSPFGG 353 (882)
Q Consensus 308 ~~l~~L~RG~t~a~I~sLaFSPDg~~LA-sgS~DGTVhIWdI~~~gg 353 (882)
.+..+..+.. .-..|+|+||++.|. +-+..+.|..|+++..+.
T Consensus 125 -~~~~~~~~~~--~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~ 168 (246)
T PF08450_consen 125 -KVTVVADGLG--FPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGG 168 (246)
T ss_dssp -EEEEEEEEES--SEEEEEEETTSSEEEEEETTTTEEEEEEEETTTC
T ss_pred -eEEEEecCcc--cccceEECCcchheeecccccceeEEEecccccc
Confidence 2222323332 368899999999775 567788899999876544
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.20 E-value=0.26 Score=55.33 Aligned_cols=123 Identities=20% Similarity=0.206 Sum_probs=77.4
Q ss_pred CCccCCCccccccccccccCCCceEEEEECCCC-c--EEEEeccCC-----CCeEEEEECCCC-CEEEEEEcCCCEEEEE
Q 002778 215 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-A--IISQFKAHT-----SPISALCFDPSG-TLLVTASVYGNNINIF 285 (882)
Q Consensus 215 s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~-~--~v~~f~aH~-----spIsaLaFSPdG-tlLATAS~dGt~IrVW 285 (882)
.++|.|++...... ..|=.|.+|.+.-- + .+..++.|. .-|++..|+|.- .+++-.|.+|+ ||+-
T Consensus 168 NSIS~NsD~Et~lS-----ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGt-IrLc 241 (433)
T KOG1354|consen 168 NSISVNSDKETFLS-----ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGT-IRLC 241 (433)
T ss_pred eeeeecCccceEee-----ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCc-EEEe
Confidence 34566776665432 34678999998532 2 234455553 468899999964 67777777787 9999
Q ss_pred ecCCCcccCCCCCCccccCCcccEEEEEEe------ccc--CCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCcc
Q 002778 286 RIMPSCMRSGSGNHKYDWNSSHVHLYKLHR------GIT--SATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS 355 (882)
Q Consensus 286 di~p~~~~~~sG~~~~d~sss~~~l~~L~R------G~t--~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~ 355 (882)
|+..... .| .+..+++... +++ -+.|.+|.||+.|+|+++-+- -||+|||++....++
T Consensus 242 DmR~~aL--------Cd---~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv 307 (433)
T KOG1354|consen 242 DMRQSAL--------CD---AHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPV 307 (433)
T ss_pred echhhhh--------hc---chhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcc
Confidence 9963210 00 1112222110 011 136899999999999987643 589999997665544
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.91 E-value=0.44 Score=53.61 Aligned_cols=104 Identities=15% Similarity=0.150 Sum_probs=69.0
Q ss_pred ccCCCceEEEEECCCC----cEEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCc
Q 002778 232 DMDNAGIVVVKDFVTR----AIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS 306 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~----~~v~~f~aH~spIsaLaFSP-dGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss 306 (882)
.|...|.|.++|+..+ .-.++---|.+.|++|..-. ++.+|...+-+|+ |++||...... +
T Consensus 269 ~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gk-ikLyD~R~~K~----~--------- 334 (425)
T KOG2695|consen 269 NGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGK-IKLYDLRATKC----K--------- 334 (425)
T ss_pred ecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCc-eeEeeehhhhc----c---------
Confidence 4678899999999865 22233334899999987655 7788877777786 99999864210 0
Q ss_pred ccEEEEEEecccCCc-EEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 307 HVHLYKLHRGITSAT-IQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 307 ~~~l~~L~RG~t~a~-I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
+-+... .||-+.. -.-+-..+....|+++++|.-.|||.+..+
T Consensus 335 -~~V~qY-eGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g 378 (425)
T KOG2695|consen 335 -KSVMQY-EGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG 378 (425)
T ss_pred -cceeee-ecccccccccccccccccceEEEccCeeEEEEEecccC
Confidence 112222 3554321 111234566788999999999999999864
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.87 E-value=0.23 Score=57.97 Aligned_cols=93 Identities=14% Similarity=0.189 Sum_probs=66.0
Q ss_pred EEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCC
Q 002778 241 VKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA 320 (882)
Q Consensus 241 VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a 320 (882)
+|.-.+...-..+.+-..|+.+++|||-|++||+....| |.+|.-.. + ..+..++ ..
T Consensus 16 f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~--V~~~~g~~-------~----------~~l~~~~----~~ 72 (561)
T COG5354 16 FWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAG--VECWGGPS-------K----------AKLVRFR----HP 72 (561)
T ss_pred eecCccccccccccccCcchhheeecCcchheehhhccc--eEEccccc-------h----------hheeeee----cC
Confidence 455455444455666778999999999999999887744 88998631 1 1333332 24
Q ss_pred cEEEEEEccCCCEEEEEeCCCe---------------EEEEECCCCCCccc
Q 002778 321 TIQDICFSHYSQWIAIVSSKGT---------------CHVFVLSPFGGDSG 356 (882)
Q Consensus 321 ~I~sLaFSPDg~~LAsgS~DGT---------------VhIWdI~~~gg~~~ 356 (882)
.|+.+.|||.++||.+-+..+. +.|||+..+.-...
T Consensus 73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~s 123 (561)
T COG5354 73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFS 123 (561)
T ss_pred CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEee
Confidence 6999999999999999887655 78888876443333
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.84 E-value=2.1 Score=52.53 Aligned_cols=99 Identities=16% Similarity=0.288 Sum_probs=70.1
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECC---CC-CEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcc
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP---SG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH 307 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSP---dG-tlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~ 307 (882)
.++..|.|.|||+..+..+..|..|.++|..|+|=| +. .+|+.-.. -..|-+|++.+ |
T Consensus 84 saD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~-ss~lvLwntdt-------G---------- 145 (1062)
T KOG1912|consen 84 SADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHG-SSTLVLWNTDT-------G---------- 145 (1062)
T ss_pred eccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecC-CcEEEEEEccC-------C----------
Confidence 457889999999999999999999999999988854 33 23333222 24588999854 4
Q ss_pred cEEEEEEecccCCcEEEEEEcc-CCCEEEEEeCCCeEEEEECCC
Q 002778 308 VHLYKLHRGITSATIQDICFSH-YSQWIAIVSSKGTCHVFVLSP 350 (882)
Q Consensus 308 ~~l~~L~RG~t~a~I~sLaFSP-Dg~~LAsgS~DGTVhIWdI~~ 350 (882)
.++++..-++ ....|+.|-| |.+.++..+..|.+-+-+.-.
T Consensus 146 ~k~Wk~~ys~--~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~ 187 (1062)
T KOG1912|consen 146 EKFWKYDYSH--EILSCFRVDPFDSRHFCVLGSKGFVLSCKDLG 187 (1062)
T ss_pred ceeeccccCC--cceeeeeeCCCCcceEEEEccCceEEEEeccC
Confidence 3566543332 2455688887 568888888899887776543
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.72 E-value=0.46 Score=57.41 Aligned_cols=102 Identities=13% Similarity=0.098 Sum_probs=73.7
Q ss_pred cCCCceEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEE
Q 002778 233 MDNAGIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 233 gs~dG~V~VWDl~s~~~v~-~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~ 311 (882)
|...|.|.+|.-..+.... ...+-...+..++.|++..++|.|+..| .|-||.+... +.+ ..+|
T Consensus 51 GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g-~V~v~ql~~~----~p~----------~~~~ 115 (726)
T KOG3621|consen 51 GSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASG-RVSVFQLNKE----LPR----------DLDY 115 (726)
T ss_pred ecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCc-eEEeehhhcc----CCC----------ccee
Confidence 3557899999988765432 2333456778889999988888777755 5889988531 111 1222
Q ss_pred EEEeccc--CCcEEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 002778 312 KLHRGIT--SATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 350 (882)
Q Consensus 312 ~L~RG~t--~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~ 350 (882)
+.+++. ...|++++||+|++.|-+|.+.|+|++-.++.
T Consensus 116 -~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 116 -VTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred -eccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 233433 56899999999999999999999999988876
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=91.40 E-value=12 Score=42.62 Aligned_cols=59 Identities=10% Similarity=-0.037 Sum_probs=42.3
Q ss_pred cCCeEEEEECCCCeEEEEEEcCCcEEE-EEEcCCEEEEE-ECCeEEEEECCCCceeEEEec
Q 002778 59 SPTAVRFYSFQSHCYEHVLRFRSSVCM-VRCSPRIVAVG-LATQIYCFDALTLENKFSVLT 117 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLkf~s~V~s-V~~S~rlLAV~-~d~qI~IWDa~T~e~l~tL~t 117 (882)
.++.|.-+|.+||+.+...+....+.+ ..+...+|.++ .++.|+.+|+.|++.+++...
T Consensus 128 ~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 188 (394)
T PRK11138 128 EKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNL 188 (394)
T ss_pred CCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecC
Confidence 356788899999999988876655433 22334445544 467899999999999888753
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.40 E-value=1.3 Score=49.46 Aligned_cols=80 Identities=14% Similarity=0.166 Sum_probs=54.9
Q ss_pred ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEE-----e-----cccCCcE-
Q 002778 254 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-----R-----GITSATI- 322 (882)
Q Consensus 254 ~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~-----R-----G~t~a~I- 322 (882)
..-.+.|+.+.|+++|+++++-+. -+++|||+...- ..+.++. + -..+..|
T Consensus 277 ~eivsSISD~kFs~ngryIlsRdy--ltvkiwDvnm~k----------------~pikTi~~h~~l~~~l~d~YEnDaif 338 (460)
T COG5170 277 EEIVSSISDFKFSDNGRYILSRDY--LTVKIWDVNMAK----------------NPIKTIPMHCDLMDELNDVYENDAIF 338 (460)
T ss_pred HHHhhhhcceEEcCCCcEEEEecc--ceEEEEeccccc----------------CCceeechHHHHHHHHHhhhhcccee
Confidence 344568999999999999998776 358999996420 1222210 0 0001112
Q ss_pred --EEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 323 --QDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 323 --~sLaFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
..+.||-|++.+.+||-.+..-||.....
T Consensus 339 dkFeisfSgd~~~v~sgsy~NNfgiyp~~ss 369 (460)
T COG5170 339 DKFEISFSGDDKHVLSGSYSNNFGIYPTDSS 369 (460)
T ss_pred eeEEEEecCCcccccccccccceeeeccccC
Confidence 35899999999999999999999885543
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=91.30 E-value=1.7 Score=50.71 Aligned_cols=118 Identities=15% Similarity=0.144 Sum_probs=67.8
Q ss_pred CCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcc
Q 002778 213 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM 292 (882)
Q Consensus 213 s~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~ 292 (882)
......++++++.+++.. ..+..-.|.+.|+.++.. ..+..-.+.-..=.|+|||+.||-+|..+..-+||.....
T Consensus 239 ~~~~P~fspDG~~l~f~~-~rdg~~~iy~~dl~~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~-- 314 (425)
T COG0823 239 NNGAPAFSPDGSKLAFSS-SRDGSPDIYLMDLDGKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLE-- 314 (425)
T ss_pred ccCCccCCCCCCEEEEEE-CCCCCccEEEEcCCCCcc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCC--
Confidence 334455667777777653 222333566778877653 3333222222245799999999988776666688887542
Q ss_pred cCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCC-Ce--EEEEECCC
Q 002778 293 RSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK-GT--CHVFVLSP 350 (882)
Q Consensus 293 ~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~D-GT--VhIWdI~~ 350 (882)
| ......++.-| ... .-.|||||++|+..+.. |- |-+.++..
T Consensus 315 ----g--------~~~~riT~~~~--~~~--~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~ 359 (425)
T COG0823 315 ----G--------SQVTRLTFSGG--GNS--NPVWSPDGDKIVFESSSGGQWDIDKNDLAS 359 (425)
T ss_pred ----C--------CceeEeeccCC--CCc--CccCCCCCCEEEEEeccCCceeeEEeccCC
Confidence 2 11222333212 111 56799999999988753 43 44444433
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=91.26 E-value=0.48 Score=38.76 Aligned_cols=31 Identities=16% Similarity=0.298 Sum_probs=28.6
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCeEEEEECC
Q 002778 319 SATIQDICFSHYSQWIAIVSSKGTCHVFVLS 349 (882)
Q Consensus 319 ~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~ 349 (882)
++.|..++|||....||.++.||.|.||.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3579999999999999999999999999984
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.14 E-value=0.67 Score=51.28 Aligned_cols=101 Identities=18% Similarity=0.149 Sum_probs=67.4
Q ss_pred ccCCCceEEEEECC-CCcEE-EEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCccc
Q 002778 232 DMDNAGIVVVKDFV-TRAII-SQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 308 (882)
Q Consensus 232 tgs~dG~V~VWDl~-s~~~v-~~f~aH~spIsaLaFSP-dGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~ 308 (882)
+|+.||.+.-||++ .++.+ ...+-|+..|.+|.=+| .++++|||+.|.+ |++||+..- | +
T Consensus 183 tGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~-i~~~DtRnm------~----------k 245 (339)
T KOG0280|consen 183 TGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC-IRVLDTRNM------G----------K 245 (339)
T ss_pred ecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccc-eeeeehhcc------c----------C
Confidence 67899999999998 33444 33677999999988876 6899999999665 999998631 2 2
Q ss_pred EEEEEEecccCCcEEEEEEccCC--CEEEEEeCCCeEEEEECCCCCC
Q 002778 309 HLYKLHRGITSATIQDICFSHYS--QWIAIVSSKGTCHVFVLSPFGG 353 (882)
Q Consensus 309 ~l~~L~RG~t~a~I~sLaFSPDg--~~LAsgS~DGTVhIWdI~~~gg 353 (882)
.+++..- ..-||-|.++|-- +.||++=.. -++|-+++....
T Consensus 246 Pl~~~~v---~GGVWRi~~~p~~~~~lL~~CMh~-G~ki~~~~~~~~ 288 (339)
T KOG0280|consen 246 PLFKAKV---GGGVWRIKHHPEIFHRLLAACMHN-GAKILDSSDKVL 288 (339)
T ss_pred ccccCcc---ccceEEEEecchhhhHHHHHHHhc-CceEEEeccccc
Confidence 3333211 1347778887753 334444333 367777765443
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=90.79 E-value=2.2 Score=51.89 Aligned_cols=116 Identities=12% Similarity=0.098 Sum_probs=69.1
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEE---cCCCE-----------EEEEecCC--CcccCC-
Q 002778 233 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTAS---VYGNN-----------INIFRIMP--SCMRSG- 295 (882)
Q Consensus 233 gs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS---~dGt~-----------IrVWdi~p--~~~~~~- 295 (882)
....+++.+.|..+.++..++.--. ....++|+|||+++.+.+ ..|.. +.+|++.. ....++
T Consensus 211 ~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK 289 (635)
T PRK02888 211 KKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGK 289 (635)
T ss_pred cceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCC
Confidence 4667899999999988887776533 335689999999998775 32222 33333321 000010
Q ss_pred ----CCC--CccccCC----cccEEEEEEecccCCcEEEEEEccCCCEEEEEe-CCCeEEEEECCCCC
Q 002778 296 ----SGN--HKYDWNS----SHVHLYKLHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFG 352 (882)
Q Consensus 296 ----sG~--~~~d~ss----s~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS-~DGTVhIWdI~~~g 352 (882)
.+. .-.|-.. ....++.+.-| ...+.|++||||+++.+++ .+.||.|.|+....
T Consensus 290 ~~~V~gn~V~VID~~t~~~~~~~v~~yIPVG---KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k 354 (635)
T PRK02888 290 FKTIGGSKVPVVDGRKAANAGSALTRYVPVP---KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD 354 (635)
T ss_pred EEEECCCEEEEEECCccccCCcceEEEEECC---CCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence 000 0000000 01123333322 3467899999999988876 48999999998754
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.64 E-value=1.4 Score=51.21 Aligned_cols=113 Identities=16% Similarity=0.201 Sum_probs=74.1
Q ss_pred CceEEEEECCCCc-EEEEe-ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCC-cccEEEE
Q 002778 236 AGIVVVKDFVTRA-IISQF-KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNS-SHVHLYK 312 (882)
Q Consensus 236 dG~V~VWDl~s~~-~v~~f-~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~ss-s~~~l~~ 312 (882)
+|.|.|+|-.... .+..+ .-|..||..+.++|.|...++....| .|.-|.....+... . ...+|.- +-.-+|.
T Consensus 121 sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~g-mVEyWs~e~~~qfP--r-~~l~~~~K~eTdLy~ 196 (558)
T KOG0882|consen 121 SGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISG-MVEYWSAEGPFQFP--R-TNLNFELKHETDLYG 196 (558)
T ss_pred CCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccc-eeEeecCCCcccCc--c-ccccccccccchhhc
Confidence 4667777755433 23333 35999999999999999999888755 69999986321100 0 0011111 0012333
Q ss_pred EEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCc
Q 002778 313 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD 354 (882)
Q Consensus 313 L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~ 354 (882)
+... .....++.|||+|..+++-+.|.+|++|++..+.-.
T Consensus 197 f~K~--Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 197 FPKA--KTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred cccc--ccCccceEEccccCcccccCcccEEEEEEeccchhh
Confidence 3221 235789999999999999999999999999865433
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=90.42 E-value=0.56 Score=55.76 Aligned_cols=55 Identities=15% Similarity=0.265 Sum_probs=44.3
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCC
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP 289 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p 289 (882)
.|..||.|.+||...+ +.++..+.-..+.++|+|+|.+++.|+..|. |.+||+.-
T Consensus 276 lGC~DgSiiLyD~~~~--~t~~~ka~~~P~~iaWHp~gai~~V~s~qGe-lQ~FD~AL 330 (545)
T PF11768_consen 276 LGCEDGSIILYDTTRG--VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGE-LQCFDMAL 330 (545)
T ss_pred EEecCCeEEEEEcCCC--eeeeeeecccceEEEEcCCCcEEEEEcCCce-EEEEEeec
Confidence 3688999999999766 3333344456688999999999999999885 99999864
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=89.70 E-value=4.8 Score=50.48 Aligned_cols=55 Identities=11% Similarity=0.176 Sum_probs=43.7
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecC
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM 288 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~ 288 (882)
.|+.+|.||+||-...+....|.+-..||..|..+.||++|+.... +.+-|+++.
T Consensus 593 vgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~--tyLlLi~t~ 647 (794)
T PF08553_consen 593 VGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK--TYLLLIDTL 647 (794)
T ss_pred EEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec--ceEEEEEEe
Confidence 3578999999997666666778888899999999999997765443 357788874
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=89.09 E-value=1 Score=50.60 Aligned_cols=99 Identities=15% Similarity=0.258 Sum_probs=58.8
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcc----cCCCCCCccccCCcccEEE
Q 002778 236 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM----RSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 236 dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~----~~~sG~~~~d~sss~~~l~ 311 (882)
.+.+.|||+.+++....... ...+....|||+|+.||-... +.|.+++...... .+|.. .++
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~~--~nly~~~~~~~~~~~lT~dg~~-----------~i~ 87 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVRD--NNLYLRDLATGQETQLTTDGEP-----------GIY 87 (353)
T ss_dssp EEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEET--TEEEEESSTTSEEEESES--TT-----------TEE
T ss_pred ceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEec--CceEEEECCCCCeEEeccccce-----------eEE
Confidence 46799999999765444433 677889999999999998874 5688888743100 00000 000
Q ss_pred EEEecccC--------CcEEEEEEccCCCEEEEEeC-CCeEEEEECCCC
Q 002778 312 KLHRGITS--------ATIQDICFSHYSQWIAIVSS-KGTCHVFVLSPF 351 (882)
Q Consensus 312 ~L~RG~t~--------a~I~sLaFSPDg~~LAsgS~-DGTVhIWdI~~~ 351 (882)
-|... ..-..+-|||||++||.... +..|+.+.+..+
T Consensus 88 ---nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~ 133 (353)
T PF00930_consen 88 ---NGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDY 133 (353)
T ss_dssp ---ESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEE
T ss_pred ---cCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeecc
Confidence 01100 01135889999999998764 445777766544
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.55 E-value=0.75 Score=55.68 Aligned_cols=98 Identities=16% Similarity=0.318 Sum_probs=68.7
Q ss_pred cCCCceEEEEECCCC---------------cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCC
Q 002778 233 MDNAGIVVVKDFVTR---------------AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSG 297 (882)
Q Consensus 233 gs~dG~V~VWDl~s~---------------~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG 297 (882)
|+.||.++|..+.+. ..-+++.+|...|.-+.|+-+.+.|-|.+.+| .|.||=+-. |
T Consensus 32 gG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G-lIiVWmlyk-------g 103 (1189)
T KOG2041|consen 32 GGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG-LIIVWMLYK-------G 103 (1189)
T ss_pred ccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc-eEEEEeeec-------c
Confidence 466777777766532 12357789999999999999999998888766 689998743 2
Q ss_pred CCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEEC
Q 002778 298 NHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 348 (882)
Q Consensus 298 ~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI 348 (882)
.|-. .+.. .| ....|.+++|..||+.|+..-.||.|.|=.+
T Consensus 104 ----sW~E---EMiN-nR--nKSvV~SmsWn~dG~kIcIvYeDGavIVGsv 144 (1189)
T KOG2041|consen 104 ----SWCE---EMIN-NR--NKSVVVSMSWNLDGTKICIVYEDGAVIVGSV 144 (1189)
T ss_pred ----cHHH---HHhh-Cc--CccEEEEEEEcCCCcEEEEEEccCCEEEEee
Confidence 1211 0100 12 2247999999999999998888887755433
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=87.92 E-value=3.8 Score=46.92 Aligned_cols=56 Identities=18% Similarity=0.309 Sum_probs=45.4
Q ss_pred ccCCCceEEEEECCCCcEEEEe-ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCC
Q 002778 232 DMDNAGIVVVKDFVTRAIISQF-KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP 289 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f-~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p 289 (882)
+++.|+.|+|-....-..+..| -+|+.-|+.|+.-++ .+|++||.|++ +++||+..
T Consensus 168 taDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~t-lr~Wd~~s 224 (390)
T KOG3914|consen 168 TADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKT-LRLWDITS 224 (390)
T ss_pred EecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCc-EEEEeccc
Confidence 5789999999777766666655 479999999999876 56889998776 89999964
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.70 E-value=1 Score=55.55 Aligned_cols=101 Identities=16% Similarity=0.223 Sum_probs=69.8
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEE
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~ 311 (882)
+....|.|.||- .+|++..... ..-.+++|||+|.--+||.+=..| .+.||...+ +...
T Consensus 36 S~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g-~~~v~~~~~------------------~e~h 94 (1416)
T KOG3617|consen 36 SPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMG-VSDVQKTNT------------------TETH 94 (1416)
T ss_pred cCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccc-eeEEEecCC------------------ceee
Confidence 345568888874 3454332221 011245699999988888876656 589999853 1223
Q ss_pred EEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCc
Q 002778 312 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD 354 (882)
Q Consensus 312 ~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~ 354 (882)
+.. -.+++.|+-+.||+||..|+++..=|.||+|.....|..
T Consensus 95 tv~-~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~ 136 (1416)
T KOG3617|consen 95 TVV-ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEI 136 (1416)
T ss_pred eec-cCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeecccc
Confidence 332 234678999999999999999999999999998765443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=87.12 E-value=18 Score=46.85 Aligned_cols=124 Identities=18% Similarity=0.262 Sum_probs=74.7
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC--CCEEEEEecCCCcccCCCCCCccccCCcccEEEEEE
Q 002778 237 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY--GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 314 (882)
Q Consensus 237 G~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~d--Gt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~ 314 (882)
..|+|||-. |..-.+=..-..-=.+|+|=|+|.++|+--.+ +..|.+|.-. |.. +--+.++
T Consensus 222 RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN------GL~----------hg~f~l~ 284 (1265)
T KOG1920|consen 222 RKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN------GLR----------HGEFVLP 284 (1265)
T ss_pred eeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC------Ccc----------ccccccC
Confidence 689999987 43221111111222469999999999986332 2247787742 211 1122332
Q ss_pred ecccCCcEEEEEEccCCCEEEEE---eCCCeEEEEECCCCCCccccccccCCCCCCcccCCCCCCcccCCCCccccccc-
Q 002778 315 RGITSATIQDICFSHYSQWIAIV---SSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQCV- 390 (882)
Q Consensus 315 RG~t~a~I~sLaFSPDg~~LAsg---S~DGTVhIWdI~~~gg~~~l~~H~~~~~~~~~sp~~~lpw~~~s~~~~~Q~~~- 390 (882)
+-.....|..|+|+.++..||+. ....-|.+|-+..+ -||..-+|.+.|...
T Consensus 285 ~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny------------------------hWYLKq~l~~~~~~~~ 340 (1265)
T KOG1920|consen 285 FPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY------------------------HWYLKQELQFSQKALL 340 (1265)
T ss_pred CcccccchheeeecCCCCceeeeecccccceEEEEEecCe------------------------EEEEEEEEeccccccc
Confidence 22222248999999999999983 33444999988654 477777777777554
Q ss_pred --CCCCCccccce
Q 002778 391 --LPPPPVTLSVV 401 (882)
Q Consensus 391 --~~~~~~~ls~v 401 (882)
-|..+.+|.+.
T Consensus 341 ~W~p~~~~~L~v~ 353 (1265)
T KOG1920|consen 341 MWDPVTEKTLHVL 353 (1265)
T ss_pred cccCCCceeEEEE
Confidence 34445566554
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.99 E-value=2.2 Score=52.59 Aligned_cols=92 Identities=16% Similarity=0.156 Sum_probs=65.1
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEE
Q 002778 233 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 312 (882)
Q Consensus 233 gs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~ 312 (882)
|...|.|.+++... .. .+...|... +-+|.++||+|.||+ +.|..+-+. .-.+.+.
T Consensus 55 GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGk-v~I~sl~~~---------------~~~~~~d 110 (846)
T KOG2066|consen 55 GTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGK-VVIGSLFTD---------------DEITQYD 110 (846)
T ss_pred ccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCc-EEEeeccCC---------------ccceeEe
Confidence 45789999999863 33 444556544 789999999999997 667776431 0124455
Q ss_pred EEecccCCcEEEEEEccC-----CCEEEEEeCCCeEEEEECCCCCCc
Q 002778 313 LHRGITSATIQDICFSHY-----SQWIAIVSSKGTCHVFVLSPFGGD 354 (882)
Q Consensus 313 L~RG~t~a~I~sLaFSPD-----g~~LAsgS~DGTVhIWdI~~~gg~ 354 (882)
+.| +|.+|+|+|| ++.+++|+..| +-++.-+-.|..
T Consensus 111 f~r-----piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk 151 (846)
T KOG2066|consen 111 FKR-----PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK 151 (846)
T ss_pred cCC-----cceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc
Confidence 543 6899999999 78899999998 777765444433
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.62 E-value=0.75 Score=57.98 Aligned_cols=81 Identities=11% Similarity=0.094 Sum_probs=58.2
Q ss_pred CCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEeccc-CCcEEEEEEccCCCEEEEEeCCCeEEE
Q 002778 267 PSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT-SATIQDICFSHYSQWIAIVSSKGTCHV 345 (882)
Q Consensus 267 PdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t-~a~I~sLaFSPDg~~LAsgS~DGTVhI 345 (882)
-.+..+|.++..|+ +-.+|.. | .+.-+.+|.. ..+|.+++|+.||+.++.|-.+|-|.+
T Consensus 97 ~~~~~ivi~Ts~gh-vl~~d~~--------~-----------nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v 156 (1206)
T KOG2079|consen 97 IVVVPIVIGTSHGH-VLLSDMT--------G-----------NLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTV 156 (1206)
T ss_pred eeeeeEEEEcCchh-hhhhhhh--------c-----------ccchhhcCCccCCcceeeEecCCCceeccccCCCcEEE
Confidence 35678888888776 5677763 1 1222333322 247999999999999999999999999
Q ss_pred EECCCCCCccccccccCCCCCC
Q 002778 346 FVLSPFGGDSGFQTLSSQGGDP 367 (882)
Q Consensus 346 WdI~~~gg~~~l~~H~~~~~~~ 367 (882)
||+........+..|.+++.+.
T Consensus 157 ~D~~~~k~l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 157 WDMHRAKILKVITEHGAPVTGV 178 (1206)
T ss_pred EEccCCcceeeeeecCCccceE
Confidence 9999877666676666555443
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=86.60 E-value=2.2 Score=49.89 Aligned_cols=98 Identities=20% Similarity=0.282 Sum_probs=61.1
Q ss_pred ceEEEEECCCCcE--EEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEE
Q 002778 237 GIVVVKDFVTRAI--ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 314 (882)
Q Consensus 237 G~V~VWDl~s~~~--v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~ 314 (882)
..+.++|+.+++. +..+.+|.. +-+|+|||++||-++..+....||=+.-. + ..+.+|-
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~---~P~fspDG~~l~f~~~rdg~~~iy~~dl~------~----------~~~~~Lt 278 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNG---APAFSPDGSKLAFSSSRDGSPDIYLMDLD------G----------KNLPRLT 278 (425)
T ss_pred ceEEEEeccCCccceeeccCCccC---CccCCCCCCEEEEEECCCCCccEEEEcCC------C----------Ccceecc
Confidence 5688999988753 445555544 46899999998876654434555544210 2 1233343
Q ss_pred ecccCCcEEEEEEccCCCEEEEEeCC-CeEEEEECCCCCCcc
Q 002778 315 RGITSATIQDICFSHYSQWIAIVSSK-GTCHVFVLSPFGGDS 355 (882)
Q Consensus 315 RG~t~a~I~sLaFSPDg~~LAsgS~D-GTVhIWdI~~~gg~~ 355 (882)
.+.... ..=+|||||++|+-.|++ |.-.||-.+..++.+
T Consensus 279 ~~~gi~--~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~ 318 (425)
T COG0823 279 NGFGIN--TSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV 318 (425)
T ss_pred cCCccc--cCccCCCCCCEEEEEeCCCCCcceEEECCCCCce
Confidence 333222 356899999999987765 556777776655543
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=85.95 E-value=54 Score=37.07 Aligned_cols=42 Identities=29% Similarity=0.358 Sum_probs=32.9
Q ss_pred CCceEEEEECC-CCcEEEEeccCCCCeEEEEECCCCCEEEEEE
Q 002778 235 NAGIVVVKDFV-TRAIISQFKAHTSPISALCFDPSGTLLVTAS 276 (882)
Q Consensus 235 ~dG~V~VWDl~-s~~~v~~f~aH~spIsaLaFSPdGtlLATAS 276 (882)
..|.|-|||.. +.+.+..|..|--.---|.+.|||..|+.|-
T Consensus 75 g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVAN 117 (305)
T PF07433_consen 75 GRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVAN 117 (305)
T ss_pred CcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEc
Confidence 35899999998 6778888887754445688999998787764
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=85.95 E-value=1.9 Score=35.28 Aligned_cols=30 Identities=20% Similarity=0.471 Sum_probs=27.0
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCCEEEEEec
Q 002778 257 TSPISALCFDPSGTLLVTASVYGNNINIFRI 287 (882)
Q Consensus 257 ~spIsaLaFSPdGtlLATAS~dGt~IrVWdi 287 (882)
..+|..++|+|...+||.++.+|. |.||++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~-v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGE-VLVYRL 40 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCe-EEEEEC
Confidence 356999999999999999999886 889998
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=85.75 E-value=20 Score=40.91 Aligned_cols=51 Identities=14% Similarity=0.109 Sum_probs=31.4
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCCeEE-EEECCCCCEEEEEEcCCCEEEEEe
Q 002778 233 MDNAGIVVVKDFVTRAIISQFKAHTSPISA-LCFDPSGTLLVTASVYGNNINIFR 286 (882)
Q Consensus 233 gs~dG~V~VWDl~s~~~v~~f~aH~spIsa-LaFSPdGtlLATAS~dGt~IrVWd 286 (882)
++.+|.|.+.|..+|+.+...+-+...+.+ ..+ .+| .|..++.+|+ +..|+
T Consensus 341 ~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~-~~~-~l~v~t~~G~-l~~~~ 392 (394)
T PRK11138 341 GDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV-ADD-KLLIQARDGT-VYAIT 392 (394)
T ss_pred EeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE-ECC-EEEEEeCCce-EEEEe
Confidence 356899999999999988777644333332 112 244 4555676675 44444
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.33 E-value=2.4 Score=49.65 Aligned_cols=119 Identities=18% Similarity=0.127 Sum_probs=83.4
Q ss_pred CCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEec-cCCCCeEEEEECCC--CCEEEEEEcCCCEEEEEecC
Q 002778 212 GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK-AHTSPISALCFDPS--GTLLVTASVYGNNINIFRIM 288 (882)
Q Consensus 212 gs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~-aH~spIsaLaFSPd--GtlLATAS~dGt~IrVWdi~ 288 (882)
|...++.++..+..++ +++.|-.|.+||-.+++.+..|. +|...|---.|=|. -+.|++.+.||. +|+=.+.
T Consensus 143 GcVntV~FN~~Gd~l~----SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq-vr~s~i~ 217 (559)
T KOG1334|consen 143 GCVNTVHFNQRGDVLA----SGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ-VRVSEIL 217 (559)
T ss_pred CccceeeecccCceee----ccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCc-eeeeeec
Confidence 3445667776666654 67889999999999988777765 78888877777763 468899999876 7887774
Q ss_pred CCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCE-EEEEeCCCeEEEEECCCC
Q 002778 289 PSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW-IAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 289 p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~-LAsgS~DGTVhIWdI~~~ 351 (882)
.. | ....+-+-+.+...|.-++.-|++.+ |.+++.|+.+.=+|+...
T Consensus 218 ~t------~----------~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~ 265 (559)
T KOG1334|consen 218 ET------G----------YVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQD 265 (559)
T ss_pred cc------c----------ceecceecccccCccceeeecCCCCCcccccccccceeeeeeccC
Confidence 31 2 01111112334456888888888754 778889999988888654
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.12 E-value=3.1 Score=50.20 Aligned_cols=55 Identities=16% Similarity=0.343 Sum_probs=46.3
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCCeE-EEEECCCCCEEEEEEcCCCEEEEEecCC
Q 002778 233 MDNAGIVVVKDFVTRAIISQFKAHTSPIS-ALCFDPSGTLLVTASVYGNNINIFRIMP 289 (882)
Q Consensus 233 gs~dG~V~VWDl~s~~~v~~f~aH~spIs-aLaFSPdGtlLATAS~dGt~IrVWdi~p 289 (882)
+-.+|.|.+.-+. -+.+.+|.-|..++. +++|.|||++||.|=.||+ |++-|+..
T Consensus 38 ~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~-I~L~Dve~ 93 (665)
T KOG4640|consen 38 RTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGT-IRLHDVEK 93 (665)
T ss_pred eccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCe-EEEEEccC
Confidence 4567888888887 566788887888887 9999999999999998876 99999964
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=83.94 E-value=1.2 Score=48.62 Aligned_cols=95 Identities=18% Similarity=0.204 Sum_probs=60.2
Q ss_pred ceEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEe
Q 002778 237 GIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 315 (882)
Q Consensus 237 G~V~VWDl~s~~~v~-~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~R 315 (882)
+..++|++.-.+.+. ..++ ...|.+++-+|.-+.|+.++.++..+-|||... .+ ...-+++
T Consensus 159 d~~~a~~~~p~~t~~~~~~~-~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn-------~~-------~p~S~l~--- 220 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKA-LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARN-------VA-------MPVSLLK--- 220 (319)
T ss_pred cceeeecccccccccccccc-cccchhhhCCcccccEEEEecCCCeEEEEEccc-------cc-------chHHHHH---
Confidence 345566665332211 1112 234999999997766655554556799999853 10 0011222
Q ss_pred cccCCcEEEEEEcc-CCCEEEEEeCCCeEEEEECCC
Q 002778 316 GITSATIQDICFSH-YSQWIAIVSSKGTCHVFVLSP 350 (882)
Q Consensus 316 G~t~a~I~sLaFSP-Dg~~LAsgS~DGTVhIWdI~~ 350 (882)
. +.+.|+.|-|.| ++..|.++|.||.+--||-++
T Consensus 221 a-hk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 221 A-HKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred H-hhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 2 236799999998 568899999999998888764
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=83.41 E-value=2.3 Score=48.28 Aligned_cols=59 Identities=17% Similarity=0.155 Sum_probs=44.7
Q ss_pred cCCeEEEEECCCCeEEEEEEcCCcEEEEEEcC----CEEEEEE-CCeEEEEECCCCceeEEEec
Q 002778 59 SPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP----RIVAVGL-ATQIYCFDALTLENKFSVLT 117 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLkf~s~V~sV~~S~----rlLAV~~-d~qI~IWDa~T~e~l~tL~t 117 (882)
..+.|-+||++|++.+..+.....+.+|..+. .++++.. +..|.+||+.|++.++++..
T Consensus 267 pgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 267 PGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp -EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred CceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 34788899999999999998777788888874 3445544 46799999999999998864
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.96 E-value=8.9 Score=47.54 Aligned_cols=102 Identities=19% Similarity=0.288 Sum_probs=70.3
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCC-----CCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCc
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPS-----GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS 306 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPd-----GtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss 306 (882)
+++.||+|.|--+-+.+...++.-+ .||.+++|+|+ .+.+++++..| +-++.-.. -+.
T Consensus 88 sCS~DGkv~I~sl~~~~~~~~~df~-rpiksial~Pd~~~~~sk~fv~GG~ag--lvL~er~w--------------lgn 150 (846)
T KOG2066|consen 88 SCSDDGKVVIGSLFTDDEITQYDFK-RPIKSIALHPDFSRQQSKQFVSGGMAG--LVLSERNW--------------LGN 150 (846)
T ss_pred EecCCCcEEEeeccCCccceeEecC-CcceeEEeccchhhhhhhheeecCcce--EEEehhhh--------------hcC
Confidence 5789999999998888766665533 69999999998 56788888866 44655321 111
Q ss_pred ccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccc
Q 002778 307 HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSG 356 (882)
Q Consensus 307 ~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~ 356 (882)
...+ .+..| ...|.+|.| .|.+||=++++| |+|||+........
T Consensus 151 k~~v-~l~~~--eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~ 194 (846)
T KOG2066|consen 151 KDSV-VLSEG--EGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTN 194 (846)
T ss_pred ccce-eeecC--ccceEEEEe--cCcEEEEecCCC-cEEEeccccceeec
Confidence 1111 23222 246999998 467999888888 79999987554433
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=82.79 E-value=1.1e+02 Score=36.30 Aligned_cols=58 Identities=12% Similarity=-0.075 Sum_probs=40.2
Q ss_pred CCeEEEEECCCCeEEEEEEcCCc---------EEEEEEcC-CEEEE-EECCeEEEEECCCCceeEEEec
Q 002778 60 PTAVRFYSFQSHCYEHVLRFRSS---------VCMVRCSP-RIVAV-GLATQIYCFDALTLENKFSVLT 117 (882)
Q Consensus 60 p~tVrlWDlkTG~~V~tLkf~s~---------V~sV~~S~-rlLAV-~~d~qI~IWDa~T~e~l~tL~t 117 (882)
.+.|.-.|++||+.+..++.... ...+.... +.|.+ ..++.|+.+|+.|++.+.+...
T Consensus 70 ~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 70 HSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGN 138 (488)
T ss_pred CCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence 47788889999998887764321 11233333 45555 4578899999999999888754
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=82.72 E-value=13 Score=35.98 Aligned_cols=65 Identities=22% Similarity=0.320 Sum_probs=44.9
Q ss_pred eEEEEE---CCCC-CEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEE
Q 002778 260 ISALCF---DPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIA 335 (882)
Q Consensus 260 IsaLaF---SPdG-tlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LA 335 (882)
|++|++ +-|| .-|+.||.| ..||||+-. ..++++.. ...|.+|+=... ..++
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D-~~IRvf~~~-------------------e~~~Ei~e---~~~v~~L~~~~~-~~F~ 57 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDD-FEIRVFKGD-------------------EIVAEITE---TDKVTSLCSLGG-GRFA 57 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCC-cEEEEEeCC-------------------cEEEEEec---ccceEEEEEcCC-CEEE
Confidence 455555 4454 467777774 569999963 25666542 346888877766 5688
Q ss_pred EEeCCCeEEEEEC
Q 002778 336 IVSSKGTCHVFVL 348 (882)
Q Consensus 336 sgS~DGTVhIWdI 348 (882)
.+...|||-||+-
T Consensus 58 Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 58 YALANGTVGVYDR 70 (111)
T ss_pred EEecCCEEEEEeC
Confidence 9999999988865
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.20 E-value=3.9 Score=45.80 Aligned_cols=34 Identities=18% Similarity=0.175 Sum_probs=27.9
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCcc
Q 002778 321 TIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS 355 (882)
Q Consensus 321 ~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~ 355 (882)
.|.++.||+.|+||++-+- -||+|||++....+.
T Consensus 282 SISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pi 315 (460)
T COG5170 282 SISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPI 315 (460)
T ss_pred hhcceEEcCCCcEEEEecc-ceEEEEecccccCCc
Confidence 5889999999999988754 589999998765443
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=82.12 E-value=1.6 Score=52.62 Aligned_cols=56 Identities=20% Similarity=0.242 Sum_probs=36.8
Q ss_pred CCCceEEEEEC-CCC-cEEEEeccCCC----CeEEEEECCCCC-EEEEEEcCCCEEEEEecCC
Q 002778 234 DNAGIVVVKDF-VTR-AIISQFKAHTS----PISALCFDPSGT-LLVTASVYGNNINIFRIMP 289 (882)
Q Consensus 234 s~dG~V~VWDl-~s~-~~v~~f~aH~s----pIsaLaFSPdGt-lLATAS~dGt~IrVWdi~p 289 (882)
..+|.|.+||. .+- ..+.++...+. .+.++++.|.-+ +||+.+.+-.+|+++|+..
T Consensus 214 ~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 214 NSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred cccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 34888999993 222 22233322222 389999999654 6778887777899999864
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=81.15 E-value=0.88 Score=56.30 Aligned_cols=98 Identities=12% Similarity=0.136 Sum_probs=75.5
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC-EEEEEecCCCcccCCCCCCccccCCcccEE
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN-NINIFRIMPSCMRSGSGNHKYDWNSSHVHL 310 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt-~IrVWdi~p~~~~~~sG~~~~d~sss~~~l 310 (882)
.|...|.|+++++.+|.......+|.++|+-|.=+-||.++.|.|.-.. ...+|+.... + ...
T Consensus 1118 vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~------~----------~~~ 1181 (1516)
T KOG1832|consen 1118 VGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASST------G----------GPR 1181 (1516)
T ss_pred eeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccc------c----------Ccc
Confidence 3578899999999999999999999999999999999988777654222 4569998421 1 122
Q ss_pred EEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 311 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 311 ~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
+.+ ++ =.++.||...+.-+.|+....++|||+++.
T Consensus 1182 Hsf-~e-----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~ 1216 (1516)
T KOG1832|consen 1182 HSF-DE-----DKAVKFSNSLQFRALGTEADDALLYDVQTC 1216 (1516)
T ss_pred ccc-cc-----cceeehhhhHHHHHhcccccceEEEecccC
Confidence 222 12 356889998888888888888999999875
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=80.63 E-value=13 Score=38.23 Aligned_cols=92 Identities=16% Similarity=0.107 Sum_probs=54.2
Q ss_pred CceEEEEECCCCcEEEEecc---CCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEE
Q 002778 236 AGIVVVKDFVTRAIISQFKA---HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 312 (882)
Q Consensus 236 dG~V~VWDl~s~~~v~~f~a---H~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~ 312 (882)
+|+|..||..+|+.+-.... ...+ .+.++ +++.+|.+++.++ .|..||..+ | ..+++
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~-~~~~~v~~~~~~~-~l~~~d~~t-------G----------~~~W~ 61 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGP-VATAV-PDGGRVYVASGDG-NLYALDAKT-------G----------KVLWR 61 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSE-EETEE-EETTEEEEEETTS-EEEEEETTT-------S----------EEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCc-cceEE-EeCCEEEEEcCCC-EEEEEECCC-------C----------CEEEE
Confidence 68999999999998877653 2222 22223 2455566666645 588999864 4 45555
Q ss_pred EEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 313 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 313 L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
+......... - ..++..|.+++.++.+..||+.++
T Consensus 62 ~~~~~~~~~~---~-~~~~~~v~v~~~~~~l~~~d~~tG 96 (238)
T PF13360_consen 62 FDLPGPISGA---P-VVDGGRVYVGTSDGSLYALDAKTG 96 (238)
T ss_dssp EECSSCGGSG---E-EEETTEEEEEETTSEEEEEETTTS
T ss_pred eeccccccce---e-eecccccccccceeeeEecccCCc
Confidence 5421111111 1 234455566667788888886654
|
... |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=80.57 E-value=12 Score=42.72 Aligned_cols=113 Identities=12% Similarity=0.076 Sum_probs=63.3
Q ss_pred CCccccccccc-cccCCCceEEEEECCCCcEEEE-eccCCCCeEEEEECCCCCEEEEEEcCC----------CEEEEEec
Q 002778 220 NSVWKVGRHAG-ADMDNAGIVVVKDFVTRAIISQ-FKAHTSPISALCFDPSGTLLVTASVYG----------NNINIFRI 287 (882)
Q Consensus 220 ss~~k~~~la~-~tgs~dG~V~VWDl~s~~~v~~-f~aH~spIsaLaFSPdGtlLATAS~dG----------t~IrVWdi 287 (882)
+++++.+++.- ..|+...+|+|+|+.+++.+.. |..- . -..++|.+||+.|.-...+. ..|..|++
T Consensus 132 Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~ 209 (414)
T PF02897_consen 132 SPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-K-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKL 209 (414)
T ss_dssp TTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-E-SEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEET
T ss_pred CCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-c-cceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEEC
Confidence 34445444432 1345557899999999987653 2321 1 12399999999877665432 23556666
Q ss_pred CCCcccCCCCCCccccCCcccEEEEEEecccCCc-EEEEEEccCCCEEEEEeCCCe----EEEEECCC
Q 002778 288 MPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSAT-IQDICFSHYSQWIAIVSSKGT----CHVFVLSP 350 (882)
Q Consensus 288 ~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~-I~sLaFSPDg~~LAsgS~DGT----VhIWdI~~ 350 (882)
.+ + ......+++ +..... ..++..|+|++||...+..++ +++.++..
T Consensus 210 gt-------~------~~~d~lvfe---~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 210 GT-------P------QSEDELVFE---EPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp TS--------------GGG-EEEEC----TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred CC-------C------hHhCeeEEe---ecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 32 1 011123443 333333 678999999999887654433 44445443
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.50 E-value=3.3 Score=51.02 Aligned_cols=101 Identities=24% Similarity=0.326 Sum_probs=76.0
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC------C---CEEEEEecCCCcccCCCCCCccc
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY------G---NNINIFRIMPSCMRSGSGNHKYD 302 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~d------G---t~IrVWdi~p~~~~~~sG~~~~d 302 (882)
.|-+.|+|.|+|+.++.+-+.|..|++.|.+|.|--.-+ |+|.+.. | +.+.|=|+.+ |
T Consensus 442 vGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~ss-lvSfsys~~n~~sg~vrN~l~vtdLrt-------G----- 508 (1062)
T KOG1912|consen 442 VGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSS-LVSFSYSHVNSASGGVRNDLVVTDLRT-------G----- 508 (1062)
T ss_pred eecCCceEEEEEecchhhhhhhcccccceeeeeecccee-EEEeeeccccccccceeeeEEEEEccc-------c-----
Confidence 467889999999999999999999999999999976644 5555431 1 1233445533 2
Q ss_pred cCCcccEEEEEE--ecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 303 WNSSHVHLYKLH--RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 303 ~sss~~~l~~L~--RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
.-..|| ++...+.|..|.-|.-++|||..=.|.-+.|||+.+.
T Consensus 509 ------lsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~ 553 (1062)
T KOG1912|consen 509 ------LSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTL 553 (1062)
T ss_pred ------cccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccc
Confidence 112222 5666678999999999999999999999999999653
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=80.43 E-value=12 Score=45.76 Aligned_cols=106 Identities=9% Similarity=0.062 Sum_probs=69.3
Q ss_pred CceEEEEECCC-----CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEE
Q 002778 236 AGIVVVKDFVT-----RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 310 (882)
Q Consensus 236 dG~V~VWDl~s-----~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l 310 (882)
++.|.|.|..+ .+.+..+.--. ....+++||||++++.++.-...+-|.|+..... ...+ ..+ ......
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVGK-sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~-~~~~--~~~--~~~~vv 368 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVPK-NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDD-LFDG--KIK--PRDAVV 368 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECCC-CccceEECCCCCEEEEeCCCCCcEEEEEChhhhh-hhhc--cCC--ccceEE
Confidence 46799999988 45566665433 3467999999999998887666799999964100 0000 000 001123
Q ss_pred EEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 002778 311 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 350 (882)
Q Consensus 311 ~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~ 350 (882)
.+..-|..+ ...+|.++|....+--.|..|-.|++..
T Consensus 369 aevevGlGP---LHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 369 AEPELGLGP---LHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EeeccCCCc---ceEEECCCCCEEEeEeecceeEEEehHH
Confidence 333334332 4578999998888888899999999976
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.40 E-value=3.8 Score=50.20 Aligned_cols=108 Identities=15% Similarity=0.192 Sum_probs=72.5
Q ss_pred EEEEECCC---CcEEEEeccCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEE
Q 002778 239 VVVKDFVT---RAIISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 314 (882)
Q Consensus 239 V~VWDl~s---~~~v~~f~aH~spIsaLaFSPdG-tlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~ 314 (882)
-.||++.. ..+--.+.+|...|+.+.|+|+- ..|||++.| +.+..||+... ...+|.+.
T Consensus 93 aiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvd-t~vh~wd~rSp----------------~~p~ys~~ 155 (1081)
T KOG0309|consen 93 AIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVD-TYVHAWDMRSP----------------HRPFYSTS 155 (1081)
T ss_pred hhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeecccc-ccceeeeccCC----------------Ccceeeee
Confidence 34666642 23345567899999999999976 489999994 56999999531 13444432
Q ss_pred ecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCcc-ccccccCCCC
Q 002778 315 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS-GFQTLSSQGG 365 (882)
Q Consensus 315 RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~-~l~~H~~~~~ 365 (882)
--++. -..|+|+--.--+.+++...-|.|||+..++.+. .+++|.+.+.
T Consensus 156 ~w~s~--asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn 205 (1081)
T KOG0309|consen 156 SWRSA--ASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVN 205 (1081)
T ss_pred ccccc--CceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeee
Confidence 11122 2458898765566667777889999998766554 5677876543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 882 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-06 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 0.002 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 6e-05 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-04 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-04 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 6e-04 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 6e-04 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.003 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 47.4 bits (111), Expect = 5e-06
Identities = 18/108 (16%), Positives = 29/108 (26%), Gaps = 18/108 (16%)
Query: 239 VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGN 298
+ D F H S I+A+CF P+G T S
Sbjct: 208 AKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATG------------------SDDAT 249
Query: 299 HKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVF 346
+ + L I + FS + + C+V+
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVW 297
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.3 bits (90), Expect = 0.002
Identities = 8/40 (20%), Positives = 12/40 (30%)
Query: 237 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTAS 276
V D + H + +S L G + T S
Sbjct: 292 FNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGS 331
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.0 bits (102), Expect = 6e-05
Identities = 10/94 (10%), Positives = 29/94 (30%), Gaps = 8/94 (8%)
Query: 253 FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 312
H + ++ F G +V+ S+ + + N+K D + + +
Sbjct: 250 GTGHKDSVYSVVFTRDGQSVVSGSLDRSVK--------LWNLQNANNKSDSKTPNSGTCE 301
Query: 313 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVF 346
+ + + + ++I S +
Sbjct: 302 VTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW 335
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.9 bits (99), Expect = 1e-04
Identities = 15/94 (15%), Positives = 35/94 (37%), Gaps = 5/94 (5%)
Query: 252 QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI-MPSCMRSGSGNHKYDWNSSHVHL 310
+ HTS + + F G L T ++R+ S + S + + + +++
Sbjct: 57 KSLDHTSVVCCVKFSNDGEYLATGC--NKTTQVYRVSDGSLVARLSDDSAANKDPENLNT 114
Query: 311 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCH 344
+ I+ +CFS +++A +
Sbjct: 115 SSSPS--SDLYIRSVCFSPDGKFLATGAEDRLIR 146
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 41.0 bits (94), Expect = 4e-04
Identities = 9/95 (9%), Positives = 22/95 (23%)
Query: 239 VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGN 298
V + + H+ + PSG + V+GN + + +
Sbjct: 40 VYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIP 99
Query: 299 HKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW 333
+ R ++ +
Sbjct: 100 VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD 134
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.5 bits (93), Expect = 6e-04
Identities = 21/150 (14%), Positives = 48/150 (32%), Gaps = 2/150 (1%)
Query: 253 FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 312
H SP++ + F P +++V+AS I ++ + + D +
Sbjct: 13 LSGHRSPVTRVIFHPVFSVMVSAS-EDATIKVWDY-ETGDFERTLKGHTDSVQDISFDHS 70
Query: 313 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPV 372
+ + I + + I + G H + +S+ ++ V
Sbjct: 71 GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130
Query: 373 LSLPWWCTSSGISEQQCVLPPPPVTLSVVS 402
+ T +G E ++ P + S
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQDGTLIAS 160
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.5 bits (93), Expect = 6e-04
Identities = 11/110 (10%), Positives = 31/110 (28%), Gaps = 20/110 (18%)
Query: 237 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGS 296
+ + D T + H + + + F G +++ + + ++
Sbjct: 227 KTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA-DDKTLRVWDYK-------- 277
Query: 297 GNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVF 346
N + H + + F + ++ S T V+
Sbjct: 278 -------NKRCMKTLNAHEH----FVTSLDFHKTAPYVVTGSVDQTVKVW 316
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 38.7 bits (88), Expect = 0.003
Identities = 13/91 (14%), Positives = 28/91 (30%), Gaps = 18/91 (19%)
Query: 256 HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 315
PIS ++ T + + ++I+ + VH K H
Sbjct: 6 LVEPISCHAWNKDRTQIAICP-NNHEVHIYEKSGN-------------KWVQVHELKEHN 51
Query: 316 GITSATIQDICFSHYSQWIAIVSSKGTCHVF 346
G + + ++ S I + +V+
Sbjct: 52 G----QVTGVDWAPDSNRIVTCGTDRNAYVW 78
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 882 | |||
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.94 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.93 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.91 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.91 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.89 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.89 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.88 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.88 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.88 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.87 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.86 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.85 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.84 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.84 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.83 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.83 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.82 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.81 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.8 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.79 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.77 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.77 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.75 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.72 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.72 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.72 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.72 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.71 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.67 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.67 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.67 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.65 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.64 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.64 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.53 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.53 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.47 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.43 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.39 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.32 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.24 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.17 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.1 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.0 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.97 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 98.97 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.86 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.67 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.58 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.52 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.49 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.27 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 97.58 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 97.46 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 97.41 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 97.06 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 96.84 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 96.72 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 96.47 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 96.2 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 95.22 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 94.28 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 90.95 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 88.79 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 87.94 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 85.14 |
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.94 E-value=2.4e-23 Score=152.20 Aligned_cols=217 Identities=13% Similarity=0.136 Sum_probs=149.2
Q ss_pred CCCEEEEEECCCCEEEEEEE-CCCCEEEEEECC--CEEEEEE-CCEEEEEECCCCCEE--EEEECCCCCCCCCCCCCCCC
Q ss_conf 59959999889990999997-699579999949--7999997-990999979999546--99942899656787743422
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENK--FSVLTYPVPQLAGQGAVGIN 132 (882)
Q Consensus 59 ~pttVrIWDLkTG~~V~tLk-f~S~V~sI~~s~--riLAVsl-d~qI~IwDa~Tle~l--~tL~t~p~p~~~~~~~~g~~ 132 (882)
..+.+.+||+.+++..+.+. |...|.++++++ ++|+++. ++.|++||+.+.+.. .++..+..+
T Consensus 36 ~~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~----------- 104 (311)
T d1nr0a1 36 NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGP----------- 104 (311)
T ss_dssp ETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSC-----------
T ss_pred ECCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCC-----------
T ss_conf 699999999999966179747888889999948999672255673674663101111000013433575-----------
Q ss_pred CCCEEEEECC--CEEEEECC----CEEECCC--CCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHCCCCCCCCCC
Q ss_conf 2310257747--58999089----7076267--88887657898878986899993078862000034340121001232
Q 002778 133 VGYGPMAVGP--RWLAYASN----TLLLSNS--GRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKY 204 (882)
Q Consensus 133 ~~~g~lAlgp--RwLAYas~----~~~iw~s--G~vspq~lt~p~vs~s~Sp~~gsLVa~yA~essk~laagiiktlsky 204 (882)
...+++.| ++|+.++. ...+|+. +.. .+ ++..+
T Consensus 105 --v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~-~~------------------------------------~l~~h 145 (311)
T d1nr0a1 105 --VKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS-NG------------------------------------NLTGQ 145 (311)
T ss_dssp --EEEEEECTTSCEEEEEECCSSCSEEEEETTTCCB-CB------------------------------------CCCCC
T ss_pred --CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CC------------------------------------CCCCC
T ss_conf --4332333111000111122111111111111111-11------------------------------------11111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEE
Q ss_conf 22337899988855797554221246456889649999799881898802489885999988999999999859998999
Q 002778 205 CQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINI 284 (882)
Q Consensus 205 ~~~llp~gs~s~~s~ss~~k~~~~~~~tgs~dG~V~IwDi~s~~~i~~l~aH~spIsaLaFSPsGtlLATAS~dGt~IrI 284 (882)
. +....+.+++..... +. +++.+|.|++||+.+.+....+..|..+|.+++|+|+|++|++++.+|. |++
T Consensus 146 ~------~~v~~v~~~~~~~~~-l~--sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~-v~~ 215 (311)
T d1nr0a1 146 A------RAMNSVDFKPSRPFR-II--SGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGT-IVL 215 (311)
T ss_dssp S------SCEEEEEECSSSSCE-EE--EEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEE
T ss_pred C------CCCCCCCCCCCCEEE-EC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCC
T ss_conf 1------111111112111012-00--0112211111111111111111111111111234764221211111111-100
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCEEEEEEEC-----CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 96688865589999854468863079999723-----557728999991299999999289909999778899
Q 002778 285 FRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG-----ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 352 (882)
Q Consensus 285 fdI~p~~~~~~sG~~~~~~s~~~~~l~~L~RG-----~t~A~I~sIaFSpDs~~LAssS~dGTVhIwdI~~~g 352 (882)
|+.... ..+..+... -+.+.|.+++|+||+++|++++.||+++||++++..
T Consensus 216 ~d~~~~-----------------~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~ 271 (311)
T d1nr0a1 216 YNGVDG-----------------TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLK 271 (311)
T ss_dssp EETTTC-----------------CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred CCCCCC-----------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCC
T ss_conf 012446-----------------41122211111110024653210247889999999379969999999996
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.93 E-value=2.6e-22 Score=146.04 Aligned_cols=112 Identities=17% Similarity=0.199 Sum_probs=92.7
Q ss_pred CCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 56889649999799881898802489885999988999999999859998999966888655899998544688630799
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 232 tgs~dG~V~IwDi~s~~~i~~l~aH~spIsaLaFSPsGtlLATAS~dGt~IrIfdI~p~~~~~~sG~~~~~~s~~~~~l~ 311 (882)
++..+|.|++||+.+++.+..+.+|..+|.+++|+|+|.+|++++.+|+ |++|++... ..+.
T Consensus 201 ~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~-i~~~~~~~~-----------------~~~~ 262 (340)
T d1tbga_ 201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT-CRLFDLRAD-----------------QELM 262 (340)
T ss_dssp EEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTT-----------------EEEE
T ss_pred EEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCE-EEEEEECCC-----------------CCCC
T ss_conf 7605736999999999488999578898589999799899999969996-999752122-----------------1111
Q ss_pred EEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 99723557728999991299999999289909999778899853223566
Q 002778 312 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 361 (882)
Q Consensus 312 ~L~RG~t~A~I~sIaFSpDs~~LAssS~dGTVhIwdI~~~gg~~~l~~H~ 361 (882)
.+........|.+++|+|++++|++++.||+++||++........+.+|.
T Consensus 263 ~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~ 312 (340)
T d1tbga_ 263 TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD 312 (340)
T ss_dssp EECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred CCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCC
T ss_conf 11122445745899998999999999797989999999993989984899
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.91 E-value=1.2e-21 Score=142.16 Aligned_cols=251 Identities=12% Similarity=0.137 Sum_probs=135.9
Q ss_pred CCCEEEEEECCCCEEEEEEE-CCCCEEEEEECC--CEEEEEE-CCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 59959999889990999997-699579999949--7999997-9909999799995469994289965678774342223
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 134 (882)
Q Consensus 59 ~pttVrIWDLkTG~~V~tLk-f~S~V~sI~~s~--riLAVsl-d~qI~IwDa~Tle~l~tL~t~p~p~~~~~~~~g~~~~ 134 (882)
.+.+|++||+.+++.+.+++ |...|.++.+++ .+++.+. ...+.+|+....+....+..+...
T Consensus 37 ~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 103 (317)
T d1vyhc1 37 EDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHN------------- 103 (317)
T ss_dssp SSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSC-------------
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------------
T ss_conf 8992999989999799999578886777763011110111111111011100111111110000000-------------
Q ss_pred CEEEEECC--CEEEEEC--CCEEECCCCC-CCCCCCCC---CCCCCCCCCCCCCCEEEEECCCHHHHH---CC-CCCCCC
Q ss_conf 10257747--5899908--9707626788-88765789---887898689999307886200003434---01-210012
Q 002778 135 YGPMAVGP--RWLAYAS--NTLLLSNSGR-LSPQNLTP---SGVSPSTSPGGSSLVARYAMEHSKQFA---AG-LSKTLS 202 (882)
Q Consensus 135 ~g~lAlgp--RwLAYas--~~~~iw~sG~-vspq~lt~---p~vs~s~Sp~~gsLVa~yA~essk~la---ag-iiktls 202 (882)
...+.+.+ +.++..+ ....+|+... ...+.+.. ......++|. +.+++....+....+. .+ ....+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~v~~~~~~~~~~~~~~~ 182 (317)
T d1vyhc1 104 VSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD-GTLIASCSNDQTVRVWVVATKECKAELR 182 (317)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred CEEEECCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCCCEEEECCCC-CCEEEEEECCCEEEEEEECCCEEEEEEE
T ss_conf 000001699855776526752357511443034687167776300001667-9999999279829997512540347882
Q ss_pred CCCC-----CCCCCCCCCC---------CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCC
Q ss_conf 3222-----3378999888---------5579755422124645688964999979988189880248988599998899
Q 002778 203 KYCQ-----ELLPDGSSSP---------VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPS 268 (882)
Q Consensus 203 ky~~-----~llp~gs~s~---------~s~ss~~k~~~~~~~tgs~dG~V~IwDi~s~~~i~~l~aH~spIsaLaFSPs 268 (882)
.+.. .+.+...... .......... ..+..+|.|++||+.+++.+.++.+|..+|.+++|+|+
T Consensus 183 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 258 (317)
T d1vyhc1 183 EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFL----LSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSG 258 (317)
T ss_dssp CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEE----EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSS
T ss_pred CCCCCCEEEEEEECCCCCEEECCCCCEEEEECCCCCEE----EECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC
T ss_conf 47787337998632564111034563034302588614----75169978999888999688999688998799998799
Q ss_pred CCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 9999999859998999966888655899998544688630799997235577289999912999999992899099997
Q 002778 269 GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV 347 (882)
Q Consensus 269 GtlLATAS~dGt~IrIfdI~p~~~~~~sG~~~~~~s~~~~~l~~L~RG~t~A~I~sIaFSpDs~~LAssS~dGTVhIwd 347 (882)
|++|++++.+|+ |+||++.. + ..+..+. ++ ...|.+++|+||+++|++++.||+++||+
T Consensus 259 ~~~l~s~~~dg~-i~iwd~~~-------~----------~~~~~~~-~h-~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 259 GKFILSCADDKT-LRVWDYKN-------K----------RCMKTLN-AH-EHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp SSCEEEEETTTE-EEEECCTT-------S----------CCCEEEE-CC-SSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CCEEEEEECCCE-EEEEECCC-------C----------CEEEEEC-CC-CCCEEEEEECCCCCEEEEEECCCEEEEEC
T ss_conf 999999979894-99999999-------9----------1999992-89-99889999949999999992899499829
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=1.9e-21 Score=140.96 Aligned_cols=283 Identities=12% Similarity=0.060 Sum_probs=120.5
Q ss_pred CEEEEEECCCCE-----EEEEEECCCCEEEEEECC--CEEEEEECCEEEEEECCCCCEEEEEECCCCCCCC-----CCCC
Q ss_conf 959999889990-----999997699579999949--7999997990999979999546999428996567-----8774
Q 002778 61 TAVRFYSFQSHC-----YEHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLA-----GQGA 128 (882)
Q Consensus 61 ttVrIWDLkTG~-----~V~tLkf~S~V~sI~~s~--riLAVsld~qI~IwDa~Tle~l~tL~t~p~p~~~-----~~~~ 128 (882)
..+.+|+.+..+ ..+++.|.+.|.+|+|++ ++||++.++.|++||+.+++.+.++..+...... ....
T Consensus 38 ~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (388)
T d1erja_ 38 DYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSS 117 (388)
T ss_dssp SCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC----------------
T ss_pred CCEEEECCCCCCCEEEEEEEECCCCCCEEEEEECCCCCEEEEEECCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 70898688777620541076079999689999999999999994994899981364057663166544324432111014
Q ss_pred CCCCCCCEEEEECC--CEEEEEC--CCEEECCCCCCC-CCCCCC---CCCCCCCCCCCCCCEEEEECCCHHHHHCCCCCC
Q ss_conf 34222310257747--5899908--970762678888-765789---887898689999307886200003434012100
Q 002778 129 VGINVGYGPMAVGP--RWLAYAS--NTLLLSNSGRLS-PQNLTP---SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKT 200 (882)
Q Consensus 129 ~g~~~~~g~lAlgp--RwLAYas--~~~~iw~sG~vs-pq~lt~---p~vs~s~Sp~~gsLVa~yA~essk~laagiikt 200 (882)
.+.......++++| ++|+.++ ..+.+|+..... ...+.. +.....+++.+.. ++....+... .++..
T Consensus 118 ~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~~~~~~~~i----~~~d~ 192 (388)
T d1erja_ 118 PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDK-LVSGSGDRTV----RIWDL 192 (388)
T ss_dssp -CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSEE----EEEET
T ss_pred CCCCCCEEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCEEE----EEEEC
T ss_conf 677898899998899980121344411112111111111111111111111011111111-1122210156----54101
Q ss_pred CCCCCCCCC-CCCCCCC-CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEE-------CCCCCCEEEEEECCCCCE
Q ss_conf 123222337-8999888-5579755422124645688964999979988189880-------248988599998899999
Q 002778 201 LSKYCQELL-PDGSSSP-VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF-------KAHTSPISALCFDPSGTL 271 (882)
Q Consensus 201 lsky~~~ll-p~gs~s~-~s~ss~~k~~~~~~~tgs~dG~V~IwDi~s~~~i~~l-------~aH~spIsaLaFSPsGtl 271 (882)
.+..+.... ....... .........+. ++..+|.|++||..++..+..+ .+|..+|.+++|+|+|++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 268 (388)
T d1erja_ 193 RTGQCSLTLSIEDGVTTVAVSPGDGKYIA----AGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS 268 (388)
T ss_dssp TTTEEEEEEECSSCEEEEEECSTTCCEEE----EEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEE----EECCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCE
T ss_conf 11111000012454421123688787589----97389819996345573000102443334577898789999799999
Q ss_pred EEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC
Q ss_conf 99998599989999668886558999985446886307999972355772899999129999999928990999977889
Q 002778 272 LVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 272 LATAS~dGt~IrIfdI~p~~~~~~sG~~~~~~s~~~~~l~~L~RG~t~A~I~sIaFSpDs~~LAssS~dGTVhIwdI~~~ 351 (882)
|++++.+|+ |++|++......... ............ ..+...|.+++|+|++++|++++.||+++||++.+.
T Consensus 269 l~s~~~d~~-i~iwd~~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~ 340 (388)
T d1erja_ 269 VVSGSLDRS-VKLWNLQNANNKSDS-----KTPNSGTCEVTY--IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG 340 (388)
T ss_dssp EEEEETTSE-EEEEEC--------------------CEEEEE--ECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC
T ss_pred EEEEECCCC-EEEEECCCCCCCCCC-----CCCCCCCEEEEC--CCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCC
T ss_conf 999978992-898751577643210-----134442001101--245532789998899999999969897999999999
Q ss_pred CCCCCCCCC
Q ss_conf 985322356
Q 002778 352 GGDSGFQTL 360 (882)
Q Consensus 352 gg~~~l~~H 360 (882)
.....+++|
T Consensus 341 ~~~~~l~~H 349 (388)
T d1erja_ 341 NPLLMLQGH 349 (388)
T ss_dssp CEEEEEECC
T ss_pred CEEEEEECC
T ss_conf 699999688
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.89 E-value=1.4e-20 Score=135.85 Aligned_cols=115 Identities=16% Similarity=0.192 Sum_probs=93.6
Q ss_pred CCCCCCEEEEEECCCCCEEEEE------CCCCCCEEEEEECCCCCEEEEEECCCC--EEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 5688964999979988189880------248988599998899999999985999--89999668886558999985446
Q 002778 232 DMDNAGIVVVKDFVTRAIISQF------KAHTSPISALCFDPSGTLLVTASVYGN--NINIFRIMPSCMRSGSGNHKYDW 303 (882)
Q Consensus 232 tgs~dG~V~IwDi~s~~~i~~l------~aH~spIsaLaFSPsGtlLATAS~dGt--~IrIfdI~p~~~~~~sG~~~~~~ 303 (882)
+++.||.|+|||+.+++.+..+ .+|..+|.+++|+|+|++||+++.|++ .|++||+.. |
T Consensus 200 sgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~-------g------ 266 (393)
T d1sq9a_ 200 TGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF-------G------ 266 (393)
T ss_dssp EECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT-------C------
T ss_pred EEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCEEEECCCCC-------C------
T ss_conf 993898299986023321100001111124256387700466532011242898842100103532-------1------
Q ss_pred CCCCCEEEEEE------------ECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 88630799997------------23557728999991299999999289909999778899853223566788
Q 002778 304 NSSHVHLYKLH------------RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQG 364 (882)
Q Consensus 304 s~~~~~l~~L~------------RG~t~A~I~sIaFSpDs~~LAssS~dGTVhIwdI~~~gg~~~l~~H~~~v 364 (882)
..+..+. .|+ ...|++|+|+||+++|++++.|++|+||++.++.....+++|...+
T Consensus 267 ----~~~~~l~~~~~~~~~~~~~~gH-~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v 334 (393)
T d1sq9a_ 267 ----ERIGSLSVPTHSSQASLGEFAH-SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI 334 (393)
T ss_dssp ----CEEEEECBC--------CCBSB-SSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGC
T ss_pred ----EEEEEECCCCCCCCCEEEEECC-CCCEEEECCCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCC
T ss_conf ----3444311566664310232023-5866600138988806987799989999999997999998868761
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=7.6e-20 Score=131.46 Aligned_cols=203 Identities=19% Similarity=0.201 Sum_probs=95.1
Q ss_pred EEEEEEECCCCEEEEEECC--CEEEEEECCEEEEEECCCCCEE---EEEE--CCCCCCCCCCCCCCCCCCCEEEEECC--
Q ss_conf 0999997699579999949--7999997990999979999546---9994--28996567877434222310257747--
Q 002778 72 CYEHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLENK---FSVL--TYPVPQLAGQGAVGINVGYGPMAVGP-- 142 (882)
Q Consensus 72 ~~V~tLkf~S~V~sI~~s~--riLAVsld~qI~IwDa~Tle~l---~tL~--t~p~p~~~~~~~~g~~~~~g~lAlgp-- 142 (882)
+.++++.|.+.|.+|+|++ ++|+.+.++.|+|||+.+.... ..+. .|.. ....+++.|
T Consensus 43 ~~~~~~~H~~~V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~-------------~I~~v~~s~dg 109 (337)
T d1gxra_ 43 RQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDN-------------YIRSCKLLPDG 109 (337)
T ss_dssp EEEEEECCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTS-------------BEEEEEECTTS
T ss_pred EEEEECCCCCCEEEEEECCCCCEEEEEECCEEEEEECCCCCCCCEEEEEEECCCCC-------------CEEEEEECCCC
T ss_conf 49998799992899999899999999979988997736776331168764048899-------------68999986799
Q ss_pred CEEEEEC--CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5899908--97076267888876578988789868999930788620000343401210012322233789998885579
Q 002778 143 RWLAYAS--NTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPN 220 (882)
Q Consensus 143 RwLAYas--~~~~iw~sG~vspq~lt~p~vs~s~Sp~~gsLVa~yA~essk~laagiiktlsky~~~llp~gs~s~~s~s 220 (882)
++|+.++ ..+.+|+.....+. +.. .+..+. .......++
T Consensus 110 ~~l~s~~~dg~i~iwd~~~~~~~-----------------~~~----------------~~~~~~------~~v~~~~~~ 150 (337)
T d1gxra_ 110 CTLIVGGEASTLSIWDLAAPTPR-----------------IKA----------------ELTSSA------PACYALAIS 150 (337)
T ss_dssp SEEEEEESSSEEEEEECCCC--E-----------------EEE----------------EEECSS------SCEEEEEEC
T ss_pred CEEEEEECCCCCCCCCCCCCCCC-----------------CCC----------------CCCCCC------CCCCCCCCC
T ss_conf 88988612332111111111111-----------------111----------------111111------111111111
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 75542212464568896499997998818988024898859999889999999998599989999668886558999985
Q 002778 221 SVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHK 300 (882)
Q Consensus 221 s~~k~~~~~~~tgs~dG~V~IwDi~s~~~i~~l~aH~spIsaLaFSPsGtlLATAS~dGt~IrIfdI~p~~~~~~sG~~~ 300 (882)
+...... ++..++.|.+||+.+.+....+..|..+|.+++|+++|.++++++.+|. +++|++.. +
T Consensus 151 ~~~~~l~----s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~-v~i~d~~~-------~--- 215 (337)
T d1gxra_ 151 PDSKVCF----SCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT-VRSWDLRE-------G--- 215 (337)
T ss_dssp TTSSEEE----EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTT-------T---
T ss_pred CCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCC-------C---
T ss_conf 1111111----1111111111111111111111111111110123444321122356655-32111111-------0---
Q ss_pred CCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC
Q ss_conf 446886307999972355772899999129999999928990999977889
Q 002778 301 YDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 301 ~~~s~~~~~l~~L~RG~t~A~I~sIaFSpDs~~LAssS~dGTVhIwdI~~~ 351 (882)
..+..+. ....|.+++|+|++++|++++.++.+++|++...
T Consensus 216 -------~~~~~~~---~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~ 256 (337)
T d1gxra_ 216 -------RQLQQHD---FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP 256 (337)
T ss_dssp -------EEEEEEE---CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS
T ss_pred -------EEECCCC---CCCCEEEEEECCCCCCCCEECCCCCCCCCCCCCC
T ss_conf -------0000246---6661579997153030000002564211111111
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.88 E-value=3.1e-20 Score=133.76 Aligned_cols=221 Identities=10% Similarity=0.045 Sum_probs=128.6
Q ss_pred CCEEEEEECCCCE--EEEEEE-CCCCEEEEEECC--CEEEEE-ECCEEEEEECCCCCEEEEEEC--CCCCCCCCCCCCCC
Q ss_conf 9959999889990--999997-699579999949--799999-799099997999954699942--89965678774342
Q 002778 60 PTAVRFYSFQSHC--YEHVLR-FRSSVCMVRCSP--RIVAVG-LATQIYCFDALTLENKFSVLT--YPVPQLAGQGAVGI 131 (882)
Q Consensus 60 pttVrIWDLkTG~--~V~tLk-f~S~V~sI~~s~--riLAVs-ld~qI~IwDa~Tle~l~tL~t--~p~p~~~~~~~~g~ 131 (882)
.+.|++||+.+++ .+..++ |.+.|.++.|++ ++|+++ .+..|++||+.+.+....+.. +..
T Consensus 28 ~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~----------- 96 (371)
T d1k8kc_ 28 NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINR----------- 96 (371)
T ss_dssp SSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSS-----------
T ss_pred CCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCC-----------
T ss_conf 898999988899789999955889988899997999999999799939998620332110012232211-----------
Q ss_pred CCCCEEEEECC--CEEEEEC--CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHCCCCCCCCCCCCC
Q ss_conf 22310257747--5899908--9707626788887657898878986899993078862000034340121001232223
Q 002778 132 NVGYGPMAVGP--RWLAYAS--NTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQE 207 (882)
Q Consensus 132 ~~~~g~lAlgp--RwLAYas--~~~~iw~sG~vspq~lt~p~vs~s~Sp~~gsLVa~yA~essk~laagiiktlsky~~~ 207 (882)
....+++.| ++++.++ ....+|+..... . ...... ....+
T Consensus 97 --~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~-----------------~-----------~~~~~~---~~~~~--- 140 (371)
T d1k8kc_ 97 --AARCVRWAPNEKKFAVGSGSRVISICYFEQEN-----------------D-----------WWVCKH---IKKPI--- 140 (371)
T ss_dssp --CEEEEEECTTSSEEEEEETTSSEEEEEEETTT-----------------T-----------EEEEEE---ECTTC---
T ss_pred --CCCCCCCCCCCCCCEEECCCCCCEEEEEECCC-----------------C-----------CCCCCC---CCCCC---
T ss_conf --00011111112110000025763025442033-----------------4-----------331110---01011---
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC------------------CEEEEECCCCCCEEEEEECCCC
Q ss_conf 3789998885579755422124645688964999979988------------------1898802489885999988999
Q 002778 208 LLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR------------------AIISQFKAHTSPISALCFDPSG 269 (882)
Q Consensus 208 llp~gs~s~~s~ss~~k~~~~~~~tgs~dG~V~IwDi~s~------------------~~i~~l~aH~spIsaLaFSPsG 269 (882)
.+....+.+++..+.++ +++.+|.|++||.... ..+..+..|...|.+++|+|+|
T Consensus 141 ---~~~v~~v~~~p~~~~l~----s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 213 (371)
T d1k8kc_ 141 ---RSTVLSLDWHPNSVLLA----AGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG 213 (371)
T ss_dssp ---CSCEEEEEECTTSSEEE----EEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS
T ss_pred ---CCCCCCCCCCCCCCCEE----CCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCC
T ss_conf ---12221111111111100----01347679998401576431001221111111101124404766747898751233
Q ss_pred CEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECC
Q ss_conf 99999985999899996688865589999854468863079999723557728999991299999999289909999778
Q 002778 270 TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 349 (882)
Q Consensus 270 tlLATAS~dGt~IrIfdI~p~~~~~~sG~~~~~~s~~~~~l~~L~RG~t~A~I~sIaFSpDs~~LAssS~dGTVhIwdI~ 349 (882)
++||+++.+|+ |++||+.. + ..+..+. + +...|.+++|+||+++|++++ |+.+++|...
T Consensus 214 ~~l~s~~~d~~-i~iwd~~~-------~----------~~~~~~~-~-~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~ 272 (371)
T d1k8kc_ 214 SRVAWVSHDST-VCLADADK-------K----------MAVATLA-S-ETLPLLAVTFITESSLVAAGH-DCFPVLFTYD 272 (371)
T ss_dssp SEEEEEETTTE-EEEEEGGG-------T----------TEEEEEE-C-SSCCEEEEEEEETTEEEEEET-TSSCEEEEEE
T ss_pred CCCCCCCCCCC-CEEEEEEC-------C----------CCEEEEE-C-CCCCCEEEEECCCCCEEEEEC-CCCEEEEEEE
T ss_conf 21000014786-05886410-------1----------2100000-1-466520365469997999981-9926787760
Q ss_pred CCCCCC
Q ss_conf 899853
Q 002778 350 PFGGDS 355 (882)
Q Consensus 350 ~~gg~~ 355 (882)
......
T Consensus 273 ~~~~~~ 278 (371)
T d1k8kc_ 273 SAAGKL 278 (371)
T ss_dssp TTTTEE
T ss_pred CCCCEE
T ss_conf 898628
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.88 E-value=1.3e-20 Score=135.96 Aligned_cols=215 Identities=12% Similarity=0.094 Sum_probs=131.3
Q ss_pred CCCEEEEEECCCCEEEEEEE--CCCCEEEEEECC--CEEEEEECCEEEEEECCCCCEE--EEE-ECCCCCCCCCCCCCCC
Q ss_conf 59959999889990999997--699579999949--7999997990999979999546--999-4289965678774342
Q 002778 59 SPTAVRFYSFQSHCYEHVLR--FRSSVCMVRCSP--RIVAVGLATQIYCFDALTLENK--FSV-LTYPVPQLAGQGAVGI 131 (882)
Q Consensus 59 ~pttVrIWDLkTG~~V~tLk--f~S~V~sI~~s~--riLAVsld~qI~IwDa~Tle~l--~tL-~t~p~p~~~~~~~~g~ 131 (882)
.+.+|++||+++++.+.++. |...|.++.+++ ++++++.++.+++|+....... ..+ ..+..
T Consensus 32 ~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~----------- 100 (299)
T d1nr0a2 32 AEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSS----------- 100 (299)
T ss_dssp TTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSS-----------
T ss_pred CCCEEEEEECCCCCEEEEECCCCCCCEEEEEEECCCEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCC-----------
T ss_conf 899299999999968899837887748998840331121023102688731677620111000111134-----------
Q ss_pred CCCCEEEEECC--CEEEEE-CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHCCCCCCCCCCCCCC
Q ss_conf 22310257747--589990-897076267888876578988789868999930788620000343401210012322233
Q 002778 132 NVGYGPMAVGP--RWLAYA-SNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQEL 208 (882)
Q Consensus 132 ~~~~g~lAlgp--RwLAYa-s~~~~iw~sG~vspq~lt~p~vs~s~Sp~~gsLVa~yA~essk~laagiiktlsky~~~l 208 (882)
....+++++ +.++.. .....+|+.+... +..
T Consensus 101 --~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~-------------------------------------~~~------- 134 (299)
T d1nr0a2 101 --QPLGLAVSADGDIAVAACYKHIAIYSHGKLT-------------------------------------EVP------- 134 (299)
T ss_dssp --CEEEEEECTTSSCEEEEESSEEEEEETTEEE-------------------------------------EEE-------
T ss_pred --CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------------------------------------CCC-------
T ss_conf --4321001122111112222222111111111-------------------------------------101-------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEE-EECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEEC
Q ss_conf 7899988855797554221246456889649999799881898-802489885999988999999999859998999966
Q 002778 209 LPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI 287 (882)
Q Consensus 209 lp~gs~s~~s~ss~~k~~~~~~~tgs~dG~V~IwDi~s~~~i~-~l~aH~spIsaLaFSPsGtlLATAS~dGt~IrIfdI 287 (882)
.......+.+++..+.+. .+..+|.|.+||+.+..... ....|..+|.+++|+|+|.+|++++.+|+ |++|++
T Consensus 135 -~~~~~~~~~~s~~~~~l~----~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-i~~~~~ 208 (299)
T d1nr0a2 135 -ISYNSSCVALSNDKQFVA----VGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRK-VIPYSV 208 (299)
T ss_dssp -CSSCEEEEEECTTSCEEE----EEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSC-EEEEEG
T ss_pred -CCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCC
T ss_conf -111233221111111111----11111111111111111111111111111111111111111111111111-111111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 88865589999854468863079999723557728999991299999999289909999778899
Q 002778 288 MPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 352 (882)
Q Consensus 288 ~p~~~~~~sG~~~~~~s~~~~~l~~L~RG~t~A~I~sIaFSpDs~~LAssS~dGTVhIwdI~~~g 352 (882)
.... .......+ .+ +...|.+++|+|++++|++++.||+++||+++...
T Consensus 209 ~~~~--------------~~~~~~~~-~~-h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~ 257 (299)
T d1nr0a2 209 ANNF--------------ELAHTNSW-TF-HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS 257 (299)
T ss_dssp GGTT--------------EESCCCCC-CC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred CCCC--------------CCCCCCCC-CC-CCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCC
T ss_conf 1111--------------11111111-11-11111111246664513888289979999899997
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.88 E-value=1.6e-19 Score=129.59 Aligned_cols=266 Identities=12% Similarity=0.059 Sum_probs=137.9
Q ss_pred CCCCCCCCCCCCCCCCCCC---CCCCEEEEEECCCCEEEEEEE-CCCCEEEEEECC--CEEEEEE-CCEEEEEECCCCCE
Q ss_conf 6655634585688999411---259959999889990999997-699579999949--7999997-99099997999954
Q 002778 39 SHLGGVRDGMMDSQSGNCV---NSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLEN 111 (882)
Q Consensus 39 ~~~~~~~~g~~~~~~~~~~---~~pttVrIWDLkTG~~V~tLk-f~S~V~sI~~s~--riLAVsl-d~qI~IwDa~Tle~ 111 (882)
||.++|..-...+. ++.+ ..+.+|++||+.+++.++++. +...|.++++++ .+++++. +..+.+|+......
T Consensus 53 GH~~~I~~l~~s~~-~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~ 131 (340)
T d1tbga_ 53 GHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG 131 (340)
T ss_dssp CCSSCEEEEEECTT-SSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCS
T ss_pred CCCCCEEEEEECCC-CCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCEEECCCCCCCCC
T ss_conf 87898889999899-99999997899555631021025799724653377567601211443101332010133222212
Q ss_pred ----EEEEECCCCCCCCCCCCCCCCCCCEEEEE-CCCEEEEE-C-CCEEECCCCCCC-CCC--CCC-CCCCCCCCCCCCC
Q ss_conf ----69994289965678774342223102577-47589990-8-970762678888-765--789-8878986899993
Q 002778 112 ----KFSVLTYPVPQLAGQGAVGINVGYGPMAV-GPRWLAYA-S-NTLLLSNSGRLS-PQN--LTP-SGVSPSTSPGGSS 180 (882)
Q Consensus 112 ----l~tL~t~p~p~~~~~~~~g~~~~~g~lAl-gpRwLAYa-s-~~~~iw~sG~vs-pq~--lt~-p~vs~s~Sp~~gs 180 (882)
...+..+... ...... ....+... . .....+...... ... ... ........ ..+.
T Consensus 132 ~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 197 (340)
T d1tbga_ 132 NVRVSRELAGHTGY-------------LSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA-PDTR 197 (340)
T ss_dssp CCCEEEEECCCSSC-------------EEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEC-TTSS
T ss_pred CCCCCEECCCCCCC-------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC-CCCC
T ss_conf 22111001354211-------------011111111111111244543200123221111123310157630012-4421
Q ss_pred CEEEEECCCHHHHHCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEE--CCC
Q ss_conf 078862000034340121001232223378--9998885579755422124645688964999979988189880--248
Q 002778 181 LVARYAMEHSKQFAAGLSKTLSKYCQELLP--DGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF--KAH 256 (882)
Q Consensus 181 LVa~yA~essk~laagiiktlsky~~~llp--~gs~s~~s~ss~~k~~~~~~~tgs~dG~V~IwDi~s~~~i~~l--~aH 256 (882)
+++....+.... ++...++.+...+. .+....+.+++....+. +++.+|.|++||+.....+..+ ..|
T Consensus 198 ~~~~~~~d~~v~----i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~----s~s~d~~i~~~~~~~~~~~~~~~~~~~ 269 (340)
T d1tbga_ 198 LFVSGACDASAK----LWDVREGMCRQTFTGHESDINAICFFPNGNAFA----TGSDDATCRLFDLRADQELMTYSHDNI 269 (340)
T ss_dssp EEEEEETTTEEE----EEETTTTEEEEEECCCSSCEEEEEECTTSSEEE----EEETTSCEEEEETTTTEEEEEECCTTC
T ss_pred EEEEEECCCEEE----EEECCCCCEEEEEECCCCCEEEEEECCCCCEEE----EEECCCEEEEEEECCCCCCCCCCCCCC
T ss_conf 268760573699----999999948899957889858999979989999----996999699975212211111112244
Q ss_pred CCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEE
Q ss_conf 98859999889999999998599989999668886558999985446886307999972355772899999129999999
Q 002778 257 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI 336 (882)
Q Consensus 257 ~spIsaLaFSPsGtlLATAS~dGt~IrIfdI~p~~~~~~sG~~~~~~s~~~~~l~~L~RG~t~A~I~sIaFSpDs~~LAs 336 (882)
..+|.+++|+|+|.+|++++.+|. |+|||+.. + ..+..+. |+ ...|.+|+|+||+++|++
T Consensus 270 ~~~i~~~~~s~~~~~l~~g~~dg~-i~iwd~~~-------~----------~~~~~~~-~H-~~~V~~l~~s~d~~~l~s 329 (340)
T d1tbga_ 270 ICGITSVSFSKSGRLLLAGYDDFN-CNVWDALK-------A----------DRAGVLA-GH-DNRVSCLGVTDDGMAVAT 329 (340)
T ss_dssp CSCEEEEEECSSSCEEEEEETTSC-EEEEETTT-------C----------CEEEEEC-CC-SSCEEEEEECTTSSCEEE
T ss_pred CCCEEEEEECCCCCEEEEEECCCE-EEEEECCC-------C----------CEEEEEC-CC-CCCEEEEEEECCCCEEEE
T ss_conf 574589999899999999979798-99999999-------9----------3989984-89-997899999089999999
Q ss_pred EECCCEEEEEE
Q ss_conf 92899099997
Q 002778 337 VSSKGTCHVFV 347 (882)
Q Consensus 337 sS~dGTVhIwd 347 (882)
++.||+|+||+
T Consensus 330 ~s~Dg~v~iWd 340 (340)
T d1tbga_ 330 GSWDSFLKIWN 340 (340)
T ss_dssp EETTSCEEEEC
T ss_pred ECCCCEEEEEC
T ss_conf 90699799859
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=3.2e-19 Score=127.78 Aligned_cols=213 Identities=13% Similarity=0.131 Sum_probs=132.9
Q ss_pred CCCEEEEEECCCCEE---EEEE---ECCCCEEEEEECC--CEEEEE-ECCEEEEEECCCCC--EEEEEECCCCCCCCCCC
Q ss_conf 599599998899909---9999---7699579999949--799999-79909999799995--46999428996567877
Q 002778 59 SPTAVRFYSFQSHCY---EHVL---RFRSSVCMVRCSP--RIVAVG-LATQIYCFDALTLE--NKFSVLTYPVPQLAGQG 127 (882)
Q Consensus 59 ~pttVrIWDLkTG~~---V~tL---kf~S~V~sI~~s~--riLAVs-ld~qI~IwDa~Tle--~l~tL~t~p~p~~~~~~ 127 (882)
....|++||+.++.. +..+ .|.+.|.++++++ ++|+++ .++.|++||+.... ....+..+...
T Consensus 70 ~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~------ 143 (337)
T d1gxra_ 70 GKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPA------ 143 (337)
T ss_dssp CBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSC------
T ss_pred ECCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC------
T ss_conf 79988997736776331168764048899689999867998898861233211111111111111111111111------
Q ss_pred CCCCCCCCEEEEECC--CEEEEEC--CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHCCCCCCCCC
Q ss_conf 434222310257747--5899908--970762678888765789887898689999307886200003434012100123
Q 002778 128 AVGINVGYGPMAVGP--RWLAYAS--NTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSK 203 (882)
Q Consensus 128 ~~g~~~~~g~lAlgp--RwLAYas--~~~~iw~sG~vspq~lt~p~vs~s~Sp~~gsLVa~yA~essk~laagiiktlsk 203 (882)
...+++.| ..++.++ ....+|+... +.+... ...
T Consensus 144 -------v~~~~~~~~~~~l~s~~~d~~i~~~~~~~-------------------~~~~~~----------------~~~ 181 (337)
T d1gxra_ 144 -------CYALAISPDSKVCFSCCSDGNIAVWDLHN-------------------QTLVRQ----------------FQG 181 (337)
T ss_dssp -------EEEEEECTTSSEEEEEETTSCEEEEETTT-------------------TEEEEE----------------ECC
T ss_pred -------CCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------------------CCCCCC----------------CCC
T ss_conf -------11111111111111111111111111111-------------------111111----------------111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEE
Q ss_conf 22233789998885579755422124645688964999979988189880248988599998899999999985999899
Q 002778 204 YCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNIN 283 (882)
Q Consensus 204 y~~~llp~gs~s~~s~ss~~k~~~~~~~tgs~dG~V~IwDi~s~~~i~~l~aH~spIsaLaFSPsGtlLATAS~dGt~Ir 283 (882)
+ .+....+.+++...... .+..+|.|++||+.+++.+..+. |..+|.+++|+|++.+|++++.+|. |+
T Consensus 182 ~------~~~v~~l~~s~~~~~~~----~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~-i~ 249 (337)
T d1gxra_ 182 H------TDGASCIDISNDGTKLW----TGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSN-VE 249 (337)
T ss_dssp C------SSCEEEEEECTTSSEEE----EEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSC-EE
T ss_pred C------CCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCEEECCCC-CCCCEEEEEECCCCCCCCEECCCCC-CC
T ss_conf 1------11111012344432112----23566553211111100000246-6661579997153030000002564-21
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC
Q ss_conf 99668886558999985446886307999972355772899999129999999928990999977889
Q 002778 284 IFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 284 IfdI~p~~~~~~sG~~~~~~s~~~~~l~~L~RG~t~A~I~sIaFSpDs~~LAssS~dGTVhIwdI~~~ 351 (882)
+|++.. + ..+.. .+ +...|.+++|+||+++|++++.||+++||++...
T Consensus 250 i~d~~~-------~-----------~~~~~-~~-~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~ 297 (337)
T d1gxra_ 250 VLHVNK-------P-----------DKYQL-HL-HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG 297 (337)
T ss_dssp EEETTS-------S-----------CEEEE-CC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred CCCCCC-------C-----------CCCCC-CC-CCCCCCEEEECCCCCEEEEEECCCEEEEEECCCC
T ss_conf 111111-------1-----------10000-12-4565416999899999999948996999989999
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.86 E-value=8.2e-19 Score=125.36 Aligned_cols=272 Identities=13% Similarity=0.077 Sum_probs=161.4
Q ss_pred CCCCCCCCCCCCCCCCCCC--CCCCEEEEEECCCCEEEEEEE-------------------CCCCEEEEEECC--CEEEE
Q ss_conf 6655634585688999411--259959999889990999997-------------------699579999949--79999
Q 002778 39 SHLGGVRDGMMDSQSGNCV--NSPTAVRFYSFQSHCYEHVLR-------------------FRSSVCMVRCSP--RIVAV 95 (882)
Q Consensus 39 ~~~~~~~~g~~~~~~~~~~--~~pttVrIWDLkTG~~V~tLk-------------------f~S~V~sI~~s~--riLAV 95 (882)
+|.+.|..-...+ +|+.+ ..+.+|++||+.+++.+.++. +...|++|+|++ ++|++
T Consensus 60 ~H~~~V~~l~fs~-dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s 138 (388)
T d1erja_ 60 DHTSVVCCVKFSN-DGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 138 (388)
T ss_dssp ECSSCCCEEEECT-TSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCCEEEEEECC-CCCEEEEEECCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEE
T ss_conf 9999689999999-999999994994899981364057663166544324432111014677898899998899980121
Q ss_pred EE-CCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECC--CEEEEEC--CCEEECCCCCCCC-CCC--CC
Q ss_conf 97-990999979999546999428996567877434222310257747--5899908--9707626788887-657--89
Q 002778 96 GL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYAS--NTLLLSNSGRLSP-QNL--TP 167 (882)
Q Consensus 96 sl-d~qI~IwDa~Tle~l~tL~t~p~p~~~~~~~~g~~~~~g~lAlgp--RwLAYas--~~~~iw~sG~vsp-q~l--t~ 167 (882)
+. ++.|++||..+.+.+..+..+..+ ...+++.+ ..++.++ ....+|+...... ... ..
T Consensus 139 ~~~dg~v~i~~~~~~~~~~~~~~h~~~-------------v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 205 (388)
T d1erja_ 139 GAEDRLIRIWDIENRKIVMILQGHEQD-------------IYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED 205 (388)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSC-------------EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC-------------CCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCC
T ss_conf 344411112111111111111111111-------------1110111111111122210156541011111100001245
Q ss_pred CCCCCCCCCCCCCCEEEEECCCHHHHH---CCCC-CCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 887898689999307886200003434---0121-001232223378999---888557975542212464568896499
Q 002778 168 SGVSPSTSPGGSSLVARYAMEHSKQFA---AGLS-KTLSKYCQELLPDGS---SSPVSPNSVWKVGRHAGADMDNAGIVV 240 (882)
Q Consensus 168 p~vs~s~Sp~~gsLVa~yA~essk~la---agii-ktlsky~~~llp~gs---~s~~s~ss~~k~~~~~~~tgs~dG~V~ 240 (882)
..+...+.+.++.+++....+....+. .+.. ..+.... ....++ ...+.+++..+.+. +++.+|.|+
T Consensus 206 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~--~~~~~h~~~v~~l~~s~~~~~l~----s~~~d~~i~ 279 (388)
T d1erja_ 206 GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSEN--ESGTGHKDSVYSVVFTRDGQSVV----SGSLDRSVK 279 (388)
T ss_dssp CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC--------CCCSSCEEEEEECTTSSEEE----EEETTSEEE
T ss_pred CCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCEEECCCC--CCCCCCCCCEEEEEECCCCCEEE----EEECCCCEE
T ss_conf 442112368878758997389819996345573000102443--33457789878999979999999----997899289
Q ss_pred EEECCCC------------CEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9979988------------1898802489885999988999999999859998999966888655899998544688630
Q 002778 241 VKDFVTR------------AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 308 (882)
Q Consensus 241 IwDi~s~------------~~i~~l~aH~spIsaLaFSPsGtlLATAS~dGt~IrIfdI~p~~~~~~sG~~~~~~s~~~~ 308 (882)
+||+... .....+..|...|.+++|+|+|.+|++++.+|+ |+|||+.. + .
T Consensus 280 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~-i~vwd~~~-------~----------~ 341 (388)
T d1erja_ 280 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG-VLFWDKKS-------G----------N 341 (388)
T ss_dssp EEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSE-EEEEETTT-------C----------C
T ss_pred EEECCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCEEEEEECCCE-EEEEECCC-------C----------C
T ss_conf 8751577643210134442001101245532789998899999999969897-99999999-------9----------6
Q ss_pred EEEEEEECCCCCCEEEEE------ECCCCCEEEEEECCCEEEEEECCC
Q ss_conf 799997235577289999------912999999992899099997788
Q 002778 309 HLYKLHRGITSATIQDIC------FSHYSQWIAIVSSKGTCHVFVLSP 350 (882)
Q Consensus 309 ~l~~L~RG~t~A~I~sIa------FSpDs~~LAssS~dGTVhIwdI~~ 350 (882)
.+..+. |+ ...|.+++ |+||+++|++++.||+|+||+++.
T Consensus 342 ~~~~l~-~H-~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~k 387 (388)
T d1erja_ 342 PLLMLQ-GH-RNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 387 (388)
T ss_dssp EEEEEE-CC-SSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred EEEEEE-CC-CCCEEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEEE
T ss_conf 999996-88-99789999846742589999999991899799976214
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.85 E-value=4e-19 Score=127.20 Aligned_cols=201 Identities=12% Similarity=0.109 Sum_probs=134.9
Q ss_pred CCCEEEEEECC--CEEEEEECCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECC--CEEEEEC--CCEE
Q ss_conf 99579999949--7999997990999979999546999428996567877434222310257747--5899908--9707
Q 002778 80 RSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYAS--NTLL 153 (882)
Q Consensus 80 ~S~V~sI~~s~--riLAVsld~qI~IwDa~Tle~l~tL~t~p~p~~~~~~~~g~~~~~g~lAlgp--RwLAYas--~~~~ 153 (882)
++.+..+++++ +.++.+.++.|++||+.+++....+..|..+ ...++++| ++||.++ ..+.
T Consensus 17 r~~~~~~a~~~~g~~l~~~~~~~v~i~~~~~~~~~~~~~~H~~~-------------v~~~~~sp~g~~latg~~dg~i~ 83 (311)
T d1nr0a1 17 RGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQ-------------TTVAKTSPSGYYCASGDVHGNVR 83 (311)
T ss_dssp TTCCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSC-------------EEEEEECTTSSEEEEEETTSEEE
T ss_pred CCCEEEEEECCCCCEEEEEECCEEEEEECCCCCEEEEECCCCCC-------------EEEEEEECCCCEEECCCCCCEEE
T ss_conf 88759999969989999996999999999999661797478888-------------89999948999672255673674
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 62678888765789887898689999307886200003434012100123222337899988855797554221246456
Q 002778 154 LSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADM 233 (882)
Q Consensus 154 iw~sG~vspq~lt~p~vs~s~Sp~~gsLVa~yA~essk~laagiiktlsky~~~llp~gs~s~~s~ss~~k~~~~~~~tg 233 (882)
+|+..... ..+... +..+ .+....+.+++..+.+... ..
T Consensus 84 iwd~~~~~-----------------~~~~~~----------------~~~~------~~~v~~v~~s~d~~~l~~~--~~ 122 (311)
T d1nr0a1 84 IWDTTQTT-----------------HILKTT----------------IPVF------SGPVKDISWDSESKRIAAV--GE 122 (311)
T ss_dssp EEESSSTT-----------------CCEEEE----------------EECS------SSCEEEEEECTTSCEEEEE--EC
T ss_pred EEEEECCC-----------------CCCCCC----------------CCCC------CCCCCCCCCCCCCCCCCCC--CC
T ss_conf 66310111-----------------100001----------------3433------5754332333111000111--12
Q ss_pred CCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCC-EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 8896499997998818988024898859999889999-999998599989999668886558999985446886307999
Q 002778 234 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 312 (882)
Q Consensus 234 s~dG~V~IwDi~s~~~i~~l~aH~spIsaLaFSPsGt-lLATAS~dGt~IrIfdI~p~~~~~~sG~~~~~~s~~~~~l~~ 312 (882)
+.+..++||+..+.+.+.++.+|..+|.+++|+|+|. +|++++.+|+ |++|++.. + ....
T Consensus 123 ~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~-i~i~d~~~-------~-----------~~~~ 183 (311)
T d1nr0a1 123 GRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNT-VAIFEGPP-------F-----------KFKS 183 (311)
T ss_dssp CSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSC-EEEEETTT-------B-----------EEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC-CCCCCCCC-------C-----------CCCC
T ss_conf 211111111111111111111111111111112111012000112211-11111111-------1-----------1111
Q ss_pred EEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCC
Q ss_conf 972355772899999129999999928990999977889985
Q 002778 313 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD 354 (882)
Q Consensus 313 L~RG~t~A~I~sIaFSpDs~~LAssS~dGTVhIwdI~~~gg~ 354 (882)
..++ +...|.+++|+||+++|++++.|+++.||++......
T Consensus 184 ~~~~-~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~ 224 (311)
T d1nr0a1 184 TFGE-HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKT 224 (311)
T ss_dssp EECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred CCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 1111-1111111234764221211111111100012446411
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.84 E-value=1.8e-18 Score=123.39 Aligned_cols=158 Identities=16% Similarity=0.106 Sum_probs=81.1
Q ss_pred EEEEEEE-CCCCEEEEEECC--CEEEEEE-CCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECC--CEE
Q ss_conf 0999997-699579999949--7999997-990999979999546999428996567877434222310257747--589
Q 002778 72 CYEHVLR-FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWL 145 (882)
Q Consensus 72 ~~V~tLk-f~S~V~sI~~s~--riLAVsl-d~qI~IwDa~Tle~l~tL~t~p~p~~~~~~~~g~~~~~g~lAlgp--RwL 145 (882)
.+.++|+ |.+.|.+|+|++ ++|+++. ++.|++||+.+.+.+.++..|..+ ...+++.+ .++
T Consensus 8 ~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~-------------V~~~~~~~~~~~~ 74 (317)
T d1vyhc1 8 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDS-------------VQDISFDHSGKLL 74 (317)
T ss_dssp SCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSC-------------EEEEEECTTSSEE
T ss_pred CCCEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCC-------------EEEEEEECCCCCC
T ss_conf 844898588887689999389899999938992999989999799999578886-------------7777630111101
Q ss_pred EEECC--CEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99089--7076267888876578988789868999930788620000343401210012322233789998885579755
Q 002778 146 AYASN--TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVW 223 (882)
Q Consensus 146 AYas~--~~~iw~sG~vspq~lt~p~vs~s~Sp~~gsLVa~yA~essk~laagiiktlsky~~~llp~gs~s~~s~ss~~ 223 (882)
+.... ....|+........ .+..+ ........+.+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~------~~~~~~~~~~~~~ 113 (317)
T d1vyhc1 75 ASCSADMTIKLWDFQGFECIR-----------------------------------TMHGH------DHNVSSVSIMPNG 113 (317)
T ss_dssp EEEETTSCCCEEETTSSCEEE-----------------------------------CCCCC------SSCEEEEEECSSS
T ss_pred CCCCCCCCCCCCCCCCCCCCC-----------------------------------CCCCC------CCCCEEEECCCCC
T ss_conf 111111110111001111111-----------------------------------10000------0000000016998
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECC
Q ss_conf 42212464568896499997998818988024898859999889999999998599989999668
Q 002778 224 KVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM 288 (882)
Q Consensus 224 k~~~~~~~tgs~dG~V~IwDi~s~~~i~~l~aH~spIsaLaFSPsGtlLATAS~dGt~IrIfdI~ 288 (882)
..+. ++..++.+++||+.++..+..+..|...+.+++|+|+|.+|++++.+|. |++|++.
T Consensus 114 ~~~~----~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~-v~~~~~~ 173 (317)
T d1vyhc1 114 DHIV----SASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT-VRVWVVA 173 (317)
T ss_dssp SEEE----EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC-EEEEETT
T ss_pred CEEE----EECCCCCEEEEECCCCEEEEEECCCCCCCEEEECCCCCCEEEEEECCCE-EEEEEEC
T ss_conf 5577----6526752357511443034687167776300001667999999927982-9997512
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=6.9e-18 Score=119.89 Aligned_cols=59 Identities=14% Similarity=0.117 Sum_probs=49.0
Q ss_pred CCCEEEEEECCCCEEEEEEE-CCCCEEEEEECCCEEEEEE-CCEEEEEECCCCCEEEEEEC
Q ss_conf 59959999889990999997-6995799999497999997-99099997999954699942
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLT 117 (882)
Q Consensus 59 ~pttVrIWDLkTG~~V~tLk-f~S~V~sI~~s~riLAVsl-d~qI~IwDa~Tle~l~tL~t 117 (882)
.+.+|++||+++++.+++++ |...|.++.+++.+|+++. +..+++|+............
T Consensus 35 ~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~~l~s~s~D~~~~~~~~~~~~~~~~~~~ 95 (342)
T d2ovrb2 35 DDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYG 95 (342)
T ss_dssp TTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCEECCCC
T ss_conf 8990999989999799999488999899994798632100000111111110000000123
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.83 E-value=1.6e-18 Score=123.72 Aligned_cols=232 Identities=14% Similarity=0.153 Sum_probs=144.5
Q ss_pred CCCEEEEEECCCCEEEEEEE-CCCCEEEEEECC-CEEEE-EECCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 59959999889990999997-699579999949-79999-9799099997999954699942899656787743422231
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP-RIVAV-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGY 135 (882)
Q Consensus 59 ~pttVrIWDLkTG~~V~tLk-f~S~V~sI~~s~-riLAV-sld~qI~IwDa~Tle~l~tL~t~p~p~~~~~~~~g~~~~~ 135 (882)
.+.+|++||+++++.+++++ |.+.|+++++++ ..+++ +.++.|++|+..+.+............ ..
T Consensus 31 ~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~-----------~~ 99 (355)
T d1nexb2 31 DDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTV-----------RC 99 (355)
T ss_dssp TTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTTEEEEEETTCCEEEEETTTTEEEEEECCCSSCE-----------EE
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC-----------CC
T ss_conf 8990999989999399999789998899998699999999645244321111111111110011111-----------11
Q ss_pred EEEEECC--CEEEEEC--CCEEECCCCCCCC-CCCCC-CCCCCC-CCCC-CCCCEEEEECCCHHHHHCCCCCCCCCCCCC
Q ss_conf 0257747--5899908--9707626788887-65789-887898-6899-993078862000034340121001232223
Q 002778 136 GPMAVGP--RWLAYAS--NTLLLSNSGRLSP-QNLTP-SGVSPS-TSPG-GSSLVARYAMEHSKQFAAGLSKTLSKYCQE 207 (882)
Q Consensus 136 g~lAlgp--RwLAYas--~~~~iw~sG~vsp-q~lt~-p~vs~s-~Sp~-~gsLVa~yA~essk~laagiiktlsky~~~ 207 (882)
..+...+ ++++..+ ..+.+|+...... ..... ...... ..+. ....+.. .
T Consensus 100 ~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~------ 157 (355)
T d1nexb2 100 LDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV----------------L------ 157 (355)
T ss_dssp EEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEE----------------E------
T ss_pred CCCCCCCCCCEEEEECCCCCEEEEECCCCCEECCCCCCCEECCCEECCCCCCCEEEE----------------E------
T ss_conf 111111232204554388868999856773001246520001000001123401210----------------1------
Q ss_pred CCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEE
Q ss_conf 378999888-5579755422124645688964999979988189880248988599998899999999985999899996
Q 002778 208 LLPDGSSSP-VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFR 286 (882)
Q Consensus 208 llp~gs~s~-~s~ss~~k~~~~~~~tgs~dG~V~IwDi~s~~~i~~l~aH~spIsaLaFSPsGtlLATAS~dGt~IrIfd 286 (882)
..+... ........... .+..++.|++||+.+.+.+..+.++...+.++.|+|++.++++++.+|+ |++|+
T Consensus 158 ---~~~~~~v~~~~~~~~~~~----~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-i~i~d 229 (355)
T d1nexb2 158 ---RGHMASVRTVSGHGNIVV----SGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT-IRIWD 229 (355)
T ss_dssp ---ECCSSCEEEEEEETTEEE----EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSC-EEEEE
T ss_pred ---EECCCCCCCCCCCCCEEE----EECCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCE-EEEEE
T ss_conf ---100222100002563344----2114420444301311000110001233211111121002101245636-87630
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 688865589999854468863079999723557728999991299999999289909999778899
Q 002778 287 IMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 352 (882)
Q Consensus 287 I~p~~~~~~sG~~~~~~s~~~~~l~~L~RG~t~A~I~sIaFSpDs~~LAssS~dGTVhIwdI~~~g 352 (882)
+.. + ..+..+. ++ ...|.+++|++ ++|++++.||++++|+++...
T Consensus 230 ~~~-------~----------~~~~~~~-~h-~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~ 274 (355)
T d1nexb2 230 LEN-------G----------ELMYTLQ-GH-TALVGLLRLSD--KFLVSAAADGSIRGWDANDYS 274 (355)
T ss_dssp TTT-------C----------CEEEEEC-CC-SSCCCEEEECS--SEEEEECTTSEEEEEETTTCC
T ss_pred CCC-------C----------CCCCCCC-CC-CCCCCCCCCCC--CEEEEEECCCCCCCCCCCCCC
T ss_conf 122-------1----------1111111-11-11111112321--003332011111111111111
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=6.5e-18 Score=120.02 Aligned_cols=246 Identities=13% Similarity=0.073 Sum_probs=135.1
Q ss_pred EECCCCEEEEEEE-CCCCEE-EEEECCCEEEEEE-CCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 9889990999997-699579-9999497999997-990999979999546999428996567877434222310257747
Q 002778 66 YSFQSHCYEHVLR-FRSSVC-MVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP 142 (882)
Q Consensus 66 WDLkTG~~V~tLk-f~S~V~-sI~~s~riLAVsl-d~qI~IwDa~Tle~l~tL~t~p~p~~~~~~~~g~~~~~g~lAlgp 142 (882)
|+..+-+..++|+ |.+.|. .+.+++++|+.+. ++.|++||+.+.+++.++..|..+ ...+++.+
T Consensus 1 W~~~~~~~~~~l~GH~~~V~s~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~-------------V~~v~~~~ 67 (342)
T d2ovrb2 1 WRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG-------------VWSSQMRD 67 (342)
T ss_dssp HHHSCCCCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSC-------------EEEEEEET
T ss_pred CCCCCCCCCEEECCCCCCEEEEEEECCCEEEEEECCCEEEEEECCCCCEEEEEECCCCC-------------EEEEEECC
T ss_conf 98998875889888687509999978999999918990999989999799999488999-------------89999479
Q ss_pred CEEEEEC--CCEEECCCCCCCCC-CCCC--CCCCCCCCCCCCCCEEEEECCCHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5899908--97076267888876-5789--88789868999930788620000343401210012322233789998885
Q 002778 143 RWLAYAS--NTLLLSNSGRLSPQ-NLTP--SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPV 217 (882)
Q Consensus 143 RwLAYas--~~~~iw~sG~vspq-~lt~--p~vs~s~Sp~~gsLVa~yA~essk~laagiiktlsky~~~llp~gs~s~~ 217 (882)
.+|+.++ ....+|+....... .... ..+..... . .........+.. ..++...++..............
T Consensus 68 ~~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~d~~----i~~~~~~~~~~~~~~~~~~~~~~ 141 (342)
T d2ovrb2 68 NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL-H-EKRVVSGSRDAT----LRVWDIETGQCLHVLMGHVAAVR 141 (342)
T ss_dssp TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE-E-TTEEEEEETTSE----EEEEESSSCCEEEEEECCSSCEE
T ss_pred CCCCCCEECCCCCCCCCCCCCCEECCCCCCEEEEEEEC-C-CCCCCCCCCCEE----EEEEECCCCCCEEEEECCCCCCE
T ss_conf 86321000001111111100000001233304765202-4-652212344403----78740355630011100111100
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCC
Q ss_conf 57975542212464568896499997998818988024898859999889999999998599989999668886558999
Q 002778 218 SPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSG 297 (882)
Q Consensus 218 s~ss~~k~~~~~~~tgs~dG~V~IwDi~s~~~i~~l~aH~spIsaLaFSPsGtlLATAS~dGt~IrIfdI~p~~~~~~sG 297 (882)
........ + ..+..+|.|++||......+..+.+|...+.++.+ +|.+|++++.+|+ |++|++.. +
T Consensus 142 ~~~~~~~~--~--~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~-i~~~d~~~-------~ 207 (342)
T d2ovrb2 142 CVQYDGRR--V--VSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTS-IRVWDVET-------G 207 (342)
T ss_dssp EEEECSSC--E--EEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSC-EEEEETTT-------C
T ss_pred EECCCCCE--E--EEECCCCEEEEEECCCCEEEEEECCCCCCCCCCCC--CCCEEEEEECCCE-EEEEECCC-------C
T ss_conf 00013330--2--43358986999525234366787275444210068--9999999958993-99952556-------5
Q ss_pred CCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCC
Q ss_conf 9854468863079999723557728999991299999999289909999778899853223
Q 002778 298 NHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQ 358 (882)
Q Consensus 298 ~~~~~~s~~~~~l~~L~RG~t~A~I~sIaFSpDs~~LAssS~dGTVhIwdI~~~gg~~~l~ 358 (882)
..+..+ .+ +...+.+++|++ ++|++++.||+++||++........+.
T Consensus 208 ----------~~~~~~-~~-~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~ 254 (342)
T d2ovrb2 208 ----------NCIHTL-TG-HQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQ 254 (342)
T ss_dssp ----------CEEEEE-CC-CCSCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred ----------EEEEEE-CC-CCCCEEEEECCC--CEEEEECCCCEEEEEECCCCCCCCCCC
T ss_conf ----------365674-16-653205770689--999997489889998655442211122
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.82 E-value=4.3e-17 Score=115.16 Aligned_cols=64 Identities=3% Similarity=-0.011 Sum_probs=39.3
Q ss_pred CCCEEEEEECC--CEEEEEE-CCEEEEEECCCCC--EEEEEECCCCCCCCCCCCCCCCCCCEEEEECC--CEEEEEC--C
Q ss_conf 99579999949--7999997-9909999799995--46999428996567877434222310257747--5899908--9
Q 002778 80 RSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLE--NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYAS--N 150 (882)
Q Consensus 80 ~S~V~sI~~s~--riLAVsl-d~qI~IwDa~Tle--~l~tL~t~p~p~~~~~~~~g~~~~~g~lAlgp--RwLAYas--~ 150 (882)
..+|..++|++ ++||++. ++.|++||..+.+ ++..+..|..+ ...++++| ++||.++ .
T Consensus 7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~-------------V~~l~fsp~~~~l~s~s~D~ 73 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQ-------------VTGVDWAPDSNRIVTCGTDR 73 (371)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSC-------------EEEEEEETTTTEEEEEETTS
T ss_pred CCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCC-------------EEEEEECCCCCEEEEEECCC
T ss_conf 98838999989999999994889899998889978999995588998-------------88999979999999997999
Q ss_pred CEEECC
Q ss_conf 707626
Q 002778 151 TLLLSN 156 (882)
Q Consensus 151 ~~~iw~ 156 (882)
.+.+|+
T Consensus 74 ~i~vWd 79 (371)
T d1k8kc_ 74 NAYVWT 79 (371)
T ss_dssp CEEEEE
T ss_pred EEEEEE
T ss_conf 399986
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.81 E-value=2.9e-17 Score=116.16 Aligned_cols=99 Identities=13% Similarity=0.180 Sum_probs=62.0
Q ss_pred CCCCEEEEEECCCCCEEEEEC-CCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 889649999799881898802-4898859999889999999998599989999668886558999985446886307999
Q 002778 234 DNAGIVVVKDFVTRAIISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 312 (882)
Q Consensus 234 s~dG~V~IwDi~s~~~i~~l~-aH~spIsaLaFSPsGtlLATAS~dGt~IrIfdI~p~~~~~~sG~~~~~~s~~~~~l~~ 312 (882)
...+.|++|++........+. .|..++.+++|+|+|.+||+++.+|. |++|++.. + .....
T Consensus 138 ~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~-i~i~d~~~-------~----------~~~~~ 199 (287)
T d1pgua2 138 EEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGK-ILLYDLQS-------R----------EVKTS 199 (287)
T ss_dssp TTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTT-------T----------EEEEC
T ss_pred CCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCC-CCCEEECC-------C----------CCCCC
T ss_conf 221000210001221000121024785369995167652110111111-00000023-------3----------21100
Q ss_pred EEECCCCCCEEEEEECCC----------CCEEEEEECCCEEEEEECCCC
Q ss_conf 972355772899999129----------999999928990999977889
Q 002778 313 LHRGITSATIQDICFSHY----------SQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 313 L~RG~t~A~I~sIaFSpD----------s~~LAssS~dGTVhIwdI~~~ 351 (882)
. ...+.+.|.+++|+|+ +.+|++++.|++++||++...
T Consensus 200 ~-~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~ 247 (287)
T d1pgua2 200 R-WAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP 247 (287)
T ss_dssp C-SCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT
T ss_pred C-CCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCC
T ss_conf 0-11111111000001365410012678870276649995999888999
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.80 E-value=1.6e-17 Score=117.78 Aligned_cols=54 Identities=19% Similarity=0.093 Sum_probs=33.4
Q ss_pred EEEEEECCCC--EEEEEEE-C-CCCEEEEEECC----CEEEEEE-CCEEEEEECCCCCEEEEE
Q ss_conf 5999988999--0999997-6-99579999949----7999997-990999979999546999
Q 002778 62 AVRFYSFQSH--CYEHVLR-F-RSSVCMVRCSP----RIVAVGL-ATQIYCFDALTLENKFSV 115 (882)
Q Consensus 62 tVrIWDLkTG--~~V~tLk-f-~S~V~sI~~s~----riLAVsl-d~qI~IwDa~Tle~l~tL 115 (882)
.++.|+.... ..+..+. | ...|..++|++ ++|+.+. ++.|++||..+.+....+
T Consensus 41 ~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~ 103 (325)
T d1pgua1 41 FVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSV 103 (325)
T ss_dssp EEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEE
T ss_pred EEEEEECCCCCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEE
T ss_conf 999976888876502899078999889999811799979999948997798540588621565
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=9.8e-18 Score=118.99 Aligned_cols=212 Identities=15% Similarity=0.164 Sum_probs=135.5
Q ss_pred CCCCEEEEEECCCCEEEEEEE-CCCCEEEEEECCCEEEEEE-CCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 259959999889990999997-6995799999497999997-99099997999954699942899656787743422231
Q 002778 58 NSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGY 135 (882)
Q Consensus 58 ~~pttVrIWDLkTG~~V~tLk-f~S~V~sI~~s~riLAVsl-d~qI~IwDa~Tle~l~tL~t~p~p~~~~~~~~g~~~~~ 135 (882)
..+.+|++||+.+++.+++++ |...|++|.+++++|+++. +..|++|++.+............. .
T Consensus 32 s~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~-------------~ 98 (293)
T d1p22a2 32 LRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEA-------------V 98 (293)
T ss_dssp ESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSC-------------E
T ss_pred ECCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC-------------C
T ss_conf 289939999999991999992677877634236300210011101100000246410011111100-------------0
Q ss_pred EEEEECCCEEEEE--CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 0257747589990--89707626788887657898878986899993078862000034340121001232223378999
Q 002778 136 GPMAVGPRWLAYA--SNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS 213 (882)
Q Consensus 136 g~lAlgpRwLAYa--s~~~~iw~sG~vspq~lt~p~vs~s~Sp~~gsLVa~yA~essk~laagiiktlsky~~~llp~gs 213 (882)
.........++.. .....+|+....... .... . + ..+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~--~--------------~---------~~~ 137 (293)
T d1p22a2 99 LHLRFNNGMMVTCSKDRSIAVWDMASPTDI----------------TLRR--V--------------L---------VGH 137 (293)
T ss_dssp EEEECCTTEEEEEETTSCEEEEECSSSSCC----------------EEEE--E--------------E---------CCC
T ss_pred CCCCCCCCCEEECCCCCCEEEEECCCCCCC----------------CCCC--C--------------C---------CCC
T ss_conf 011111100000135663068613445444----------------2121--0--------------0---------011
Q ss_pred CCCC-CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCC
Q ss_conf 8885-579755422124645688964999979988189880248988599998899999999985999899996688865
Q 002778 214 SSPV-SPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM 292 (882)
Q Consensus 214 ~s~~-s~ss~~k~~~~~~~tgs~dG~V~IwDi~s~~~i~~l~aH~spIsaLaFSPsGtlLATAS~dGt~IrIfdI~p~~~ 292 (882)
...+ ......... ..++.++.|++||..+.+.+..+.+|..++..+.++ +..|++++.+|+ |+||++...
T Consensus 138 ~~~v~~~~~~~~~~----~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~-i~i~d~~~~-- 208 (293)
T d1p22a2 138 RAAVNVVDFDDKYI----VSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNT-IRLWDIECG-- 208 (293)
T ss_dssp SSCEEEEEEETTEE----EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSC-EEEEETTTC--
T ss_pred CCCCCCCEECCCCC----CCCCCCCCEEEECCCCCCEEEEECCCCCCCCCCCCC--CCEEEEECCCCE-EEEEECCCC--
T ss_conf 35431100000220----110699860410078883889971554453221689--875887658998-999866556--
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC
Q ss_conf 58999985446886307999972355772899999129999999928990999977889
Q 002778 293 RSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 293 ~~~sG~~~~~~s~~~~~l~~L~RG~t~A~I~sIaFSpDs~~LAssS~dGTVhIwdI~~~ 351 (882)
..+... .+.. ..+. .+++++.+|++++.||+++||++...
T Consensus 209 ---------------~~~~~~-~~~~-~~v~--~~~~~~~~l~sg~~dg~i~iwd~~~~ 248 (293)
T d1p22a2 209 ---------------ACLRVL-EGHE-ELVR--CIRFDNKRIVSGAYDGKIKVWDLVAA 248 (293)
T ss_dssp ---------------CEEEEE-CCCS-SCEE--EEECCSSEEEEEETTSCEEEEEHHHH
T ss_pred ---------------EEEEEE-CCCC-EEEE--ECCCCCEEEEEECCCCEEEEEECCCC
T ss_conf ---------------146652-1431-0000--01454107999867997999988888
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.77 E-value=2.4e-16 Score=110.80 Aligned_cols=203 Identities=7% Similarity=0.060 Sum_probs=126.2
Q ss_pred CEEEEEEE-CCCCEEEEEECC--CEEEEEE-CCEEEEEECCCCCEEEEEEC-CCCCCCCCCCCCCCCCCCEEEEECC--C
Q ss_conf 90999997-699579999949--7999997-99099997999954699942-8996567877434222310257747--5
Q 002778 71 HCYEHVLR-FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLT-YPVPQLAGQGAVGINVGYGPMAVGP--R 143 (882)
Q Consensus 71 G~~V~tLk-f~S~V~sI~~s~--riLAVsl-d~qI~IwDa~Tle~l~tL~t-~p~p~~~~~~~~g~~~~~g~lAlgp--R 143 (882)
|+..+++. |.+.|.+++|++ ++|+.+. ++.|++||+.+.+.+.++.. |..+ ...+++.| +
T Consensus 2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~-------------v~~v~~~~~g~ 68 (299)
T d1nr0a2 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATM-------------ITGIKTTSKGD 68 (299)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSC-------------EEEEEECTTSC
T ss_pred CCCCEECCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCC-------------EEEEEEECCCE
T ss_conf 86136848888782899997999999999089929999999996889983788774-------------89988403311
Q ss_pred EEEEEC-CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 899908-9707626788887657898878986899993078862000034340121001232223378999888557975
Q 002778 144 WLAYAS-NTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSV 222 (882)
Q Consensus 144 wLAYas-~~~~iw~sG~vspq~lt~p~vs~s~Sp~~gsLVa~yA~essk~laagiiktlsky~~~llp~gs~s~~s~ss~ 222 (882)
+++.+. ....+|+........... ...+ ... ....+.++++
T Consensus 69 ~~~~~~d~~v~~~~~~~~~~~~~~~-------------------------~~~~----~~~---------~~~~~~~s~~ 110 (299)
T d1nr0a2 69 LFTVSWDDHLKVVPAGGSGVDSSKA-------------------------VANK----LSS---------QPLGLAVSAD 110 (299)
T ss_dssp EEEEETTTEEEEECSSSSSSCTTSC-------------------------CEEE----CSS---------CEEEEEECTT
T ss_pred EECCCCEEEEEEECCCCCCCCCCCC-------------------------CCCC----CCC---------CCCCCCCCCC
T ss_conf 2102310268873167762011100-------------------------0111----134---------4321001122
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 54221246456889649999799881898802489885999988999999999859998999966888655899998544
Q 002778 223 WKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYD 302 (882)
Q Consensus 223 ~k~~~~~~~tgs~dG~V~IwDi~s~~~i~~l~aH~spIsaLaFSPsGtlLATAS~dGt~IrIfdI~p~~~~~~sG~~~~~ 302 (882)
++... ...++.+.+|+... ..... ....+.+++|+|++.+|++++.+|. |++|++.. +
T Consensus 111 g~~~~-----~~~~~~i~~~~~~~--~~~~~--~~~~~~~~~~s~~~~~l~~g~~dg~-i~~~d~~~-------~----- 168 (299)
T d1nr0a2 111 GDIAV-----AACYKHIAIYSHGK--LTEVP--ISYNSSCVALSNDKQFVAVGGQDSK-VHVYKLSG-------A----- 168 (299)
T ss_dssp SSCEE-----EEESSEEEEEETTE--EEEEE--CSSCEEEEEECTTSCEEEEEETTSE-EEEEEEET-------T-----
T ss_pred CCCCC-----CCCCCCCCCCCCCC--CCCCC--CCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCC-------C-----
T ss_conf 11111-----22222221111111--11101--1112332211111111111111111-11111111-------1-----
Q ss_pred CCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 68863079999723557728999991299999999289909999778899
Q 002778 303 WNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 352 (882)
Q Consensus 303 ~s~~~~~l~~L~RG~t~A~I~sIaFSpDs~~LAssS~dGTVhIwdI~~~g 352 (882)
.+..+..-.+...|.+++|+|++++|++++.++++++|++....
T Consensus 169 ------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~ 212 (299)
T d1nr0a2 169 ------SVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF 212 (299)
T ss_dssp ------EEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT
T ss_pred ------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf ------11111111111111111111111111111111111111111111
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.77 E-value=8.3e-17 Score=113.50 Aligned_cols=111 Identities=13% Similarity=0.080 Sum_probs=69.1
Q ss_pred CCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCE-EEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 88964999979988189880248988599998899999-99998599989999668886558999985446886307999
Q 002778 234 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTL-LVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 312 (882)
Q Consensus 234 s~dG~V~IwDi~s~~~i~~l~aH~spIsaLaFSPsGtl-LATAS~dGt~IrIfdI~p~~~~~~sG~~~~~~s~~~~~l~~ 312 (882)
+.++.+.+|+..+++.+..+.+|..+|.+++|+|++.+ +++++.+|. +++|++.+. .....
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~-v~~~d~~~~-----------------~~~~~ 197 (325)
T d1pgua1 136 GRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGS-VVFYQGPPF-----------------KFSAS 197 (325)
T ss_dssp CSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTE-EEEEETTTB-----------------EEEEE
T ss_pred CCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCCC-CCCCCCCCC-----------------CCCEE
T ss_conf 244047888502331100120012343211112343206888621112-211112211-----------------00000
Q ss_pred EEEC-CCCCCEEEEEECCC-CCEEEEEECCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf 9723-55772899999129-99999992899099997788998532235667
Q 002778 313 LHRG-ITSATIQDICFSHY-SQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSS 362 (882)
Q Consensus 313 L~RG-~t~A~I~sIaFSpD-s~~LAssS~dGTVhIwdI~~~gg~~~l~~H~~ 362 (882)
+... .+...|.+++|+|| +.+|++++.|++++||++........++.|..
T Consensus 198 ~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~ 249 (325)
T d1pgua1 198 DRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQE 249 (325)
T ss_dssp ECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTB
T ss_pred CCCCCCCCCCCEEEEECCCCCEECCCCCCCCCEEEEEECCCCCCCCCCCCCC
T ss_conf 0001577775277630345310000112332101343001222111111111
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.75 E-value=6.1e-16 Score=108.37 Aligned_cols=56 Identities=18% Similarity=0.065 Sum_probs=46.9
Q ss_pred CCEEEEEECCCCEEEEEEECCCCEEEEEECC--CEEEEEE-CCEEEEEECCCCCEEEEE
Q ss_conf 9959999889990999997699579999949--7999997-990999979999546999
Q 002778 60 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSV 115 (882)
Q Consensus 60 pttVrIWDLkTG~~V~tLkf~S~V~sI~~s~--riLAVsl-d~qI~IwDa~Tle~l~tL 115 (882)
..+|+|||+++++.+.++.....+.+|+|++ ++++++. ++.|.+||+.|.+.....
T Consensus 41 dg~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~ 99 (426)
T d1hzua2 41 AGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVA 99 (426)
T ss_dssp TTEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEE
T ss_conf 99799999999959999968998038999899999999958998899975688604899
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.72 E-value=2e-14 Score=99.46 Aligned_cols=254 Identities=16% Similarity=0.111 Sum_probs=138.1
Q ss_pred CCCEEEEEECCCCEEEEEEECCCCEEEEEECC--CEEEEEE--CCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 59959999889990999997699579999949--7999997--9909999799995469994289965678774342223
Q 002778 59 SPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL--ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 134 (882)
Q Consensus 59 ~pttVrIWDLkTG~~V~tLkf~S~V~sI~~s~--riLAVsl--d~qI~IwDa~Tle~l~tL~t~p~p~~~~~~~~g~~~~ 134 (882)
..++|.+||+++++.+++++....+..+.+++ +.|+|+. +++|++||+.+.+.+.++..+..|
T Consensus 10 ~~~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~------------- 76 (301)
T d1l0qa2 10 ESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSP------------- 76 (301)
T ss_dssp TTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSE-------------
T ss_pred CCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCC-------------
T ss_conf 9998999999999599999889983699992898999999789998999999989410320002464-------------
Q ss_pred CEEEEECC--CEEEEE-C--CCEEECCCCC-CCCCCCCC--CCCCCCCCCCCCCCEEEEECCCHHHHHCCCCCCCCCCCC
Q ss_conf 10257747--589990-8--9707626788-88765789--887898689999307886200003434012100123222
Q 002778 135 YGPMAVGP--RWLAYA-S--NTLLLSNSGR-LSPQNLTP--SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQ 206 (882)
Q Consensus 135 ~g~lAlgp--RwLAYa-s--~~~~iw~sG~-vspq~lt~--p~vs~s~Sp~~gsLVa~yA~essk~laagiiktlsky~~ 206 (882)
..+++.+ +++... . ....+|+... .....+.. ......++|.+..++.....+.... ++...+....
T Consensus 77 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~----~~~~~~~~~~ 151 (301)
T d1l0qa2 77 -QGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVS----VINTVTKAVI 151 (301)
T ss_dssp -EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEE----EEETTTTEEE
T ss_pred -CCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCEEEEEECCCCEEEEEECCCCCEE----EEECCCCCEE
T ss_conf -31100011111111111110011001243024320244444237876058971554201111001----1000146303
Q ss_pred CCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCC--CEEE
Q ss_conf 337-8999888557975542212464568896499997998818988024898859999889999999998599--9899
Q 002778 207 ELL-PDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG--NNIN 283 (882)
Q Consensus 207 ~ll-p~gs~s~~s~ss~~k~~~~~~~tgs~dG~V~IwDi~s~~~i~~l~aH~spIsaLaFSPsGtlLATAS~dG--t~Ir 283 (882)
..+ .......+...+..+...+ .....+.+.+|+.........+..+ .....++|+++|..++.+..++ ..|.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~v~~~~~~~~~v~ 227 (301)
T d1l0qa2 152 NTVSVGRSPKGIAVTPDGTKVYV---ANFDSMSISVIDTVTNSVIDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYFNTVS 227 (301)
T ss_dssp EEEECCSSEEEEEECTTSSEEEE---EETTTTEEEEEETTTTEEEEEEECS-SEEEEEEECTTSSEEEEEEECSSCCEEE
T ss_pred EECCCCCCCEEEEEECCCCCEEE---ECCCCCCCCCCCCCCEEEEECCCCC-CCCCEEECCCCCCCCCCCCCCCEEEEEE
T ss_conf 53156788428886046540131---0121111111111100011101335-7750311011110111100210000232
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEE-EEEECCCEEEEEECCCCCCC
Q ss_conf 996688865589999854468863079999723557728999991299999-99928990999977889985
Q 002778 284 IFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI-AIVSSKGTCHVFVLSPFGGD 354 (882)
Q Consensus 284 IfdI~p~~~~~~sG~~~~~~s~~~~~l~~L~RG~t~A~I~sIaFSpDs~~L-AssS~dGTVhIwdI~~~gg~ 354 (882)
+||+.. + ..+..+.-+ ..+.+++||||+++| ++++.+++++|||+++....
T Consensus 228 v~D~~t-------~----------~~~~~~~~~---~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~ 279 (301)
T d1l0qa2 228 MIDTGT-------N----------KITARIPVG---PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTIT 279 (301)
T ss_dssp EEETTT-------T----------EEEEEEECC---SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred EEECCC-------C----------EEEEEECCC---CCEEEEEEECCCCEEEEEECCCCEEEEEECCCCEEE
T ss_conf 365699-------8----------199998489---987799991898999999899996999999999599
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.72 E-value=2.1e-15 Score=105.22 Aligned_cols=104 Identities=15% Similarity=0.171 Sum_probs=75.3
Q ss_pred CCCCCCEEEEEECCCC---------------C---EEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCC
Q ss_conf 5688964999979988---------------1---898802489885999988999999999859998999966888655
Q 002778 232 DMDNAGIVVVKDFVTR---------------A---IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR 293 (882)
Q Consensus 232 tgs~dG~V~IwDi~s~---------------~---~i~~l~aH~spIsaLaFSPsGtlLATAS~dGt~IrIfdI~p~~~~ 293 (882)
.+..+|.|.+||+... . .......+...+.+++|+|+| +||+++.||+ |+||++..
T Consensus 141 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~-i~iwd~~~---- 214 (393)
T d1sq9a_ 141 ATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGT-VQISELST---- 214 (393)
T ss_dssp EEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSE-EEEEETTT----
T ss_pred EECCCCCEEEEEEECCCCCCCEEEEEECCCEECCCCEECCCCCCCCEEEEEECCCC-EEEEEECCCC-EEEEEECC----
T ss_conf 98389819998740477534102331032000145100025789867899978999-8999938982-99986023----
Q ss_pred CCCCCCCCCCCCCCCEEEEEEE-----CCCCCCEEEEEECCCCCEEEEEECCCE---EEEEECCCCCCCC
Q ss_conf 8999985446886307999972-----355772899999129999999928990---9999778899853
Q 002778 294 SGSGNHKYDWNSSHVHLYKLHR-----GITSATIQDICFSHYSQWIAIVSSKGT---CHVFVLSPFGGDS 355 (882)
Q Consensus 294 ~~sG~~~~~~s~~~~~l~~L~R-----G~t~A~I~sIaFSpDs~~LAssS~dGT---VhIwdI~~~gg~~ 355 (882)
+ ..++.+.. + +...|.+|+||||+++|++++.|++ ++||++.......
T Consensus 215 ---~----------~~~~~~~~~~~l~~-h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~ 270 (393)
T d1sq9a_ 215 ---L----------RPLYNFESQHSMIN-NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIG 270 (393)
T ss_dssp ---T----------EEEEEEECCC---C-CCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred ---C----------CCCCCCCCCCCCCC-CCCEEEECCCCCCCCEEEEECCCCCCCEEEECCCCCCEEEE
T ss_conf ---3----------21100001111124-25638770046653201124289884210010353213444
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.72 E-value=9.1e-16 Score=107.36 Aligned_cols=211 Identities=14% Similarity=0.115 Sum_probs=120.1
Q ss_pred EEEE-CCCCE-EEEEECCCEEEEEE-CCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECC-CEEEEEC-
Q ss_conf 9997-69957-99999497999997-990999979999546999428996567877434222310257747-5899908-
Q 002778 75 HVLR-FRSSV-CMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP-RWLAYAS- 149 (882)
Q Consensus 75 ~tLk-f~S~V-~sI~~s~riLAVsl-d~qI~IwDa~Tle~l~tL~t~p~p~~~~~~~~g~~~~~g~lAlgp-RwLAYas- 149 (882)
.+|+ |.+.| ..+.++.++|+++. ++.|++||+.+.+++.++..|..+ ...+++.+ ..|+.++
T Consensus 6 ~tL~GH~~~vitc~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~-------------V~~l~~s~~~~l~s~s~ 72 (355)
T d1nexb2 6 TTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGG-------------VWALKYAHGGILVSGST 72 (355)
T ss_dssp EEEECCSSSCEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSC-------------EEEEEEETTTEEEEEET
T ss_pred EEECCCCCCCEEEEEECCCEEEEEECCCEEEEEECCCCCEEEEEECCCCC-------------EEEEEECCCCEEEEEEC
T ss_conf 88898378869999988999999918990999989999399999789998-------------89999869999999964
Q ss_pred -CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -9707626788887657898878986899993078862000034340121001232223378999888557975542212
Q 002778 150 -NTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRH 228 (882)
Q Consensus 150 -~~~~iw~sG~vspq~lt~p~vs~s~Sp~~gsLVa~yA~essk~laagiiktlsky~~~llp~gs~s~~s~ss~~k~~~~ 228 (882)
..+.+|+..... .......... ...+ ......+......
T Consensus 73 D~~i~iw~~~~~~-------------------~~~~~~~~~~-----------~~~~---------~~~~~~~~~~~~~- 112 (355)
T d1nexb2 73 DRTVRVWDIKKGC-------------------CTHVFEGHNS-----------TVRC---------LDIVEYKNIKYIV- 112 (355)
T ss_dssp TCCEEEEETTTTE-------------------EEEEECCCSS-----------CEEE---------EEEEEETTEEEEE-
T ss_pred CCCCCCCCCCCCC-------------------CCCCCCCCCC-----------CCCC---------CCCCCCCCCCEEE-
T ss_conf 5244321111111-------------------1111100111-----------1111---------1111112322045-
Q ss_pred CCCCCCCCCEEEEEECCCCCE-----------------------EEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf 464568896499997998818-----------------------988024898859999889999999998599989999
Q 002778 229 AGADMDNAGIVVVKDFVTRAI-----------------------ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIF 285 (882)
Q Consensus 229 ~~~tgs~dG~V~IwDi~s~~~-----------------------i~~l~aH~spIsaLaFSPsGtlLATAS~dGt~IrIf 285 (882)
.+..+|.|++||+..... +.....|...+. .+.++|.+++++..++. |++|
T Consensus 113 ---~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~d~~-i~~~ 186 (355)
T d1nexb2 113 ---TGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR--TVSGHGNIVVSGSYDNT-LIVW 186 (355)
T ss_dssp ---EEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEE--EEEEETTEEEEEETTSC-EEEE
T ss_pred ---EECCCCCEEEEECCCCCEECCCCCCCEECCCEECCCCCCCEEEEEEECCCCCC--CCCCCCCEEEEECCCCE-EEEE
T ss_conf ---54388868999856773001246520001000001123401210110022210--00025633442114420-4443
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 668886558999985446886307999972355772899999129999999928990999977889985322356678
Q 002778 286 RIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQ 363 (882)
Q Consensus 286 dI~p~~~~~~sG~~~~~~s~~~~~l~~L~RG~t~A~I~sIaFSpDs~~LAssS~dGTVhIwdI~~~gg~~~l~~H~~~ 363 (882)
++.. + ..+.... +. ...+.++.|++++.++++++.|++++||++........++.|...
T Consensus 187 d~~~-------~----------~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~ 245 (355)
T d1nexb2 187 DVAQ-------M----------KCLYILS-GH-TDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTAL 245 (355)
T ss_dssp ETTT-------T----------EEEEEEC-CC-SSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred ECCC-------C----------CCEEEEE-CC-CCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCC
T ss_conf 0131-------1----------0001100-01-233211111121002101245636876301221111111111111
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.72 E-value=1.1e-14 Score=100.95 Aligned_cols=108 Identities=17% Similarity=0.226 Sum_probs=75.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEE-EECCCCCCEEEEEECCCC----------CEEEEEECCCCEEEEE
Q ss_conf 55797554221246456889649999799881898-802489885999988999----------9999998599989999
Q 002778 217 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSG----------TLLVTASVYGNNINIF 285 (882)
Q Consensus 217 ~s~ss~~k~~~~~~~tgs~dG~V~IwDi~s~~~i~-~l~aH~spIsaLaFSPsG----------tlLATAS~dGt~IrIf 285 (882)
+.+++..+.+. .++.+|.|++||+.++..+. .+.+|..+|.+++|+|.+ .+|||++.||+ |+||
T Consensus 168 ~~~s~~~~~l~----~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~-i~iw 242 (287)
T d1pgua2 168 ISISPSETYIA----AGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN-IFIY 242 (287)
T ss_dssp EEECTTSSEEE----EEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSC-EEEE
T ss_pred EEECCCCCCCC----CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCCE-EEEE
T ss_conf 99516765211----011111100000023321100011111111000001365410012678870276649995-9998
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf 668886558999985446886307999972355772899999129999999928990999977
Q 002778 286 RIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 348 (882)
Q Consensus 286 dI~p~~~~~~sG~~~~~~s~~~~~l~~L~RG~t~A~I~sIaFSpDs~~LAssS~dGTVhIwdI 348 (882)
++... + .+....+|+ ...|.+++|+|++ .|++++.|++++||+|
T Consensus 243 ~~~~~------~-----------~~~~~~~~h-~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 243 SVKRP------M-----------KIIKALNAH-KDGVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp ESSCT------T-----------CCEEETTSS-TTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred ECCCC------C-----------EEEEEECCC-CCCEEEEEECCCC-EEEEEECCCEEEEEEE
T ss_conf 88999------7-----------589992787-8985899998999-8999979992999997
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.71 E-value=3.3e-14 Score=98.15 Aligned_cols=174 Identities=9% Similarity=0.009 Sum_probs=120.1
Q ss_pred CCCEEEEEECCCCEEEEEEECCCCEEEEEECC--CEEEE-EECC--EEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 59959999889990999997699579999949--79999-9799--0999979999546999428996567877434222
Q 002778 59 SPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAV-GLAT--QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 133 (882)
Q Consensus 59 ~pttVrIWDLkTG~~V~tLkf~S~V~sI~~s~--riLAV-sld~--qI~IwDa~Tle~l~tL~t~p~p~~~~~~~~g~~~ 133 (882)
+...|.+||+.++..+. +.|...|.+++|++ +.|++ +.++ .|++||+.+.+.. .+..++..
T Consensus 22 ~~g~v~v~d~~~~~~~~-~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~------------ 87 (360)
T d1k32a3 22 SRGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGN------------ 87 (360)
T ss_dssp ETTEEEEECTTSSBEEE-CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCS------------
T ss_pred ECCEEEEEECCCCCEEE-CCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEE-EEECCCCE------------
T ss_conf 89969999899994899-16999888899989999999999289989999989999488-75089712------------
Q ss_pred CCEEEEECC--CEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 310257747--589990897076267888876578988789868999930788620000343401210012322233789
Q 002778 134 GYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPD 211 (882)
Q Consensus 134 ~~g~lAlgp--RwLAYas~~~~iw~sG~vspq~lt~p~vs~s~Sp~~gsLVa~yA~essk~laagiiktlsky~~~llp~ 211 (882)
...++++| ++|+
T Consensus 88 -v~~~~~spdg~~l~----------------------------------------------------------------- 101 (360)
T d1k32a3 88 -VFAMGVDRNGKFAV----------------------------------------------------------------- 101 (360)
T ss_dssp -EEEEEECTTSSEEE-----------------------------------------------------------------
T ss_pred -EEEEEECCCCCCCC-----------------------------------------------------------------
T ss_conf -77412114543210-----------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECC---------CCEE
Q ss_conf 9988855797554221246456889649999799881898802489885999988999999999859---------9989
Q 002778 212 GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY---------GNNI 282 (882)
Q Consensus 212 gs~s~~s~ss~~k~~~~~~~tgs~dG~V~IwDi~s~~~i~~l~aH~spIsaLaFSPsGtlLATAS~d---------Gt~I 282 (882)
.+..++.+.+|+..+.+....+..|...+.+++|+|+|++||.++.+ +..+
T Consensus 102 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~ 161 (360)
T d1k32a3 102 --------------------VANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAI 161 (360)
T ss_dssp --------------------EEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEE
T ss_pred --------------------EECCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHCCCEEEEEEECCCCCCCEEECCCCCE
T ss_conf --------------------001111100000122210000001355202301213225665212331211000256542
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 9996688865589999854468863079999723557728999991299999999289909999778899
Q 002778 283 NIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 352 (882)
Q Consensus 283 rIfdI~p~~~~~~sG~~~~~~s~~~~~l~~L~RG~t~A~I~sIaFSpDs~~LAssS~dGTVhIwdI~~~g 352 (882)
++|++.. + ....+.. ....+..++||||+++|+.++.++++++|+.....
T Consensus 162 ~v~d~~~-------~-----------~~~~~~~--~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~ 211 (360)
T d1k32a3 162 HVYDMEG-------R-----------KIFAATT--ENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLN 211 (360)
T ss_dssp EEEETTT-------T-----------EEEECSC--SSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSC
T ss_pred EEECCCC-------C-----------CEEEECC--CCCCCCCCCCCCCCCEEEEEECCCCEECCCCCCCC
T ss_conf 6630455-------7-----------1353035--43221100125779999999599855753335440
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.67 E-value=1.1e-13 Score=94.93 Aligned_cols=266 Identities=12% Similarity=0.086 Sum_probs=146.4
Q ss_pred CCCCEEEEEECCCCEEEEEEECC---CCEEEEEECC--CEEEEEE--CCEEEEEECCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 25995999988999099999769---9579999949--7999997--990999979999546999428996567877434
Q 002778 58 NSPTAVRFYSFQSHCYEHVLRFR---SSVCMVRCSP--RIVAVGL--ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVG 130 (882)
Q Consensus 58 ~~pttVrIWDLkTG~~V~tLkf~---S~V~sI~~s~--riLAVsl--d~qI~IwDa~Tle~l~tL~t~p~p~~~~~~~~g 130 (882)
..+++|++||+++++.++++... ..+.++++++ +++.|+. ++.|++||+.+++.+.++.......
T Consensus 8 ~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~-------- 79 (337)
T d1pbyb_ 8 ARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE-------- 79 (337)
T ss_dssp ETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE--------
T ss_pred CCCCEEEEEECCCCEEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCC--------
T ss_conf 679989999999994999998778899823799999989999997899949999999992988872477731--------
Q ss_pred CCCCCEEEEECC--CEEEEECC--------------CEEECCCCCCC-CCCCC-C-CCCCCCCCCCCCCCEEEEECCCH-
Q ss_conf 222310257747--58999089--------------70762678888-76578-9-88789868999930788620000-
Q 002778 131 INVGYGPMAVGP--RWLAYASN--------------TLLLSNSGRLS-PQNLT-P-SGVSPSTSPGGSSLVARYAMEHS- 190 (882)
Q Consensus 131 ~~~~~g~lAlgp--RwLAYas~--------------~~~iw~sG~vs-pq~lt-~-p~vs~s~Sp~~gsLVa~yA~ess- 190 (882)
.......++++| ++++.+.. ...+|+..... ...+. . ......++|++..++.. ..+..
T Consensus 80 ~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~~~~ 158 (337)
T d1pbyb_ 80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL-GRDLHV 158 (337)
T ss_dssp EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE-SSSEEE
T ss_pred CCCCEEEEEECCCCCEEEEEECCCCCEEEECCCCCCCEEECCCCCCEEEEECCCCCCCEEEEECCCCCEEEEE-CCCCCE
T ss_conf 2540254898687757999504776203420345552120356677598841456872189986888889997-177505
Q ss_pred HHHHCCC-CCCC--CCCCCC--CCCCCCC-CCCCCCC----------CCCCCCCCCCCCCCCCEEEEEECCCCCEEE-EE
Q ss_conf 3434012-1001--232223--3789998-8855797----------554221246456889649999799881898-80
Q 002778 191 KQFAAGL-SKTL--SKYCQE--LLPDGSS-SPVSPNS----------VWKVGRHAGADMDNAGIVVVKDFVTRAIIS-QF 253 (882)
Q Consensus 191 k~laagi-iktl--sky~~~--llp~gs~-s~~s~ss----------~~k~~~~~~~tgs~dG~V~IwDi~s~~~i~-~l 253 (882)
.....+. .+++ ...... ..+++.. .+..... .+... .......++.+.+||...+.... .+
T Consensus 159 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (337)
T d1pbyb_ 159 MDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDID--PADPTAYRTGLLTMDLETGEMAMREV 236 (337)
T ss_dssp EETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSC--TTSGGGEEEEEEEEETTTCCEEEEEE
T ss_pred EEEECCCEEEEEECCCCCCCCEECCCCCEEECCCCCCCEEEEEEEEEEECCC--EEEECCCCCCEEEEECCCCCEEEEEE
T ss_conf 6630372788861477543311357763140146653124663244410366--04540367617999868885888983
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCE
Q ss_conf 24898859999889999999998599989999668886558999985446886307999972355772899999129999
Q 002778 254 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW 333 (882)
Q Consensus 254 ~aH~spIsaLaFSPsGtlLATAS~dGt~IrIfdI~p~~~~~~sG~~~~~~s~~~~~l~~L~RG~t~A~I~sIaFSpDs~~ 333 (882)
..|...+..++++|++.+++.++ + .|++||+.. + ..+..+. ....+.+++||||+++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~--~-~i~v~d~~~-------~----------~~~~~~~---~~~~~~~~~~s~dG~~ 293 (337)
T d1pbyb_ 237 RIMDVFYFSTAVNPAKTRAFGAY--N-VLESFDLEK-------N----------ASIKRVP---LPHSYYSVNVSTDGST 293 (337)
T ss_dssp EECSSCEEEEEECTTSSEEEEEE--S-EEEEEETTT-------T----------EEEEEEE---CSSCCCEEEECTTSCE
T ss_pred CCCCCCEEEEEECCCCEEEEECC--C-CEEEEECCC-------C----------CEEEEEC---CCCCEEEEEECCCCCE
T ss_conf 28875058887426613999735--5-289998988-------9----------6999974---8998899999789999
Q ss_pred EEEEECCCEEEEEECCCCCCCCCC
Q ss_conf 999928990999977889985322
Q 002778 334 IAIVSSKGTCHVFVLSPFGGDSGF 357 (882)
Q Consensus 334 LAssS~dGTVhIwdI~~~gg~~~l 357 (882)
|++++.++++.|||+.+......+
T Consensus 294 l~v~~~~~~i~v~D~~t~~~v~~i 317 (337)
T d1pbyb_ 294 VWLGGALGDLAAYDAETLEKKGQV 317 (337)
T ss_dssp EEEESBSSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCEEEEECCCCCEEEEE
T ss_conf 999949992999999987698999
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=2e-14 Score=99.35 Aligned_cols=196 Identities=14% Similarity=0.106 Sum_probs=123.7
Q ss_pred CCCCEEEEEECCCEEEEEE-CCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEC--CCEEEC
Q ss_conf 6995799999497999997-9909999799995469994289965678774342223102577475899908--970762
Q 002778 79 FRSSVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYAS--NTLLLS 155 (882)
Q Consensus 79 f~S~V~sI~~s~riLAVsl-d~qI~IwDa~Tle~l~tL~t~p~p~~~~~~~~g~~~~~g~lAlgpRwLAYas--~~~~iw 155 (882)
+...|+.+.++.++|+.+. ++.|++||+.+++++.++..|..+ ...+++.+++|+.++ ....+|
T Consensus 14 ~~~~V~c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~-------------V~~v~~~~~~l~s~s~D~~i~~~ 80 (293)
T d1p22a2 14 TSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGS-------------VLCLQYDERVIITGSSDSTVRVW 80 (293)
T ss_dssp SCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSC-------------EEEEECCSSEEEEEETTSCEEEE
T ss_pred CCCCEEEEEECCCEEEEEECCCEEEEEECCCCCEEEEEECCCCC-------------EEEEECCCCEEECCCCCCCCCCC
T ss_conf 99988999876999999928993999999999199999267787-------------76342363002100111011000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 67888876578988789868999930788620000343401210012322233789998885579755422124645688
Q 002778 156 NSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDN 235 (882)
Q Consensus 156 ~sG~vspq~lt~p~vs~s~Sp~~gsLVa~yA~essk~laagiiktlsky~~~llp~gs~s~~s~ss~~k~~~~~~~tgs~ 235 (882)
+.... ........ .............. +. .+..
T Consensus 81 ~~~~~-------------------~~~~~~~~------------------------~~~~~~~~~~~~~~--~~--~~~~ 113 (293)
T d1p22a2 81 DVNTG-------------------EMLNTLIH------------------------HCEAVLHLRFNNGM--MV--TCSK 113 (293)
T ss_dssp ESSSC-------------------CEEEEECC------------------------CCSCEEEEECCTTE--EE--EEET
T ss_pred CCCCC-------------------CCCCCCCC------------------------CCCCCCCCCCCCCC--EE--ECCC
T ss_conf 00246-------------------41001111------------------------11000011111100--00--0135
Q ss_pred CCEEEEEECCCCC---EEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 9649999799881---8988024898859999889999999998599989999668886558999985446886307999
Q 002778 236 AGIVVVKDFVTRA---IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 312 (882)
Q Consensus 236 dG~V~IwDi~s~~---~i~~l~aH~spIsaLaFSPsGtlLATAS~dGt~IrIfdI~p~~~~~~sG~~~~~~s~~~~~l~~ 312 (882)
++.+.+||..... ....+..|...+.++.+.+ ..+++++.++. |++|++.. + ..+..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~d~~-i~~~d~~~-------~----------~~~~~ 173 (293)
T d1p22a2 114 DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRT-IKVWNTST-------C----------EFVRT 173 (293)
T ss_dssp TSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEETTSE-EEEEETTT-------C----------CEEEE
T ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEECC--CCCCCCCCCCC-EEEECCCC-------C----------CEEEE
T ss_conf 66306861344544421210001135431100000--22011069986-04100788-------8----------38899
Q ss_pred EEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCC
Q ss_conf 9723557728999991299999999289909999778899853223
Q 002778 313 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQ 358 (882)
Q Consensus 313 L~RG~t~A~I~sIaFSpDs~~LAssS~dGTVhIwdI~~~gg~~~l~ 358 (882)
+. +.. ..+..+.|+ +.+|++++.||+++||++..........
T Consensus 174 ~~-~~~-~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 215 (293)
T d1p22a2 174 LN-GHK-RGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLE 215 (293)
T ss_dssp EE-CCS-SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred EC-CCC-CCCCCCCCC--CCEEEEECCCCEEEEEECCCCEEEEEEC
T ss_conf 71-554-453221689--8758876589989998665561466521
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.67 E-value=4e-13 Score=91.68 Aligned_cols=183 Identities=10% Similarity=-0.014 Sum_probs=109.7
Q ss_pred CCCEEEEEECCCCEEEEEEECCCCEEEEEECC--CEEEEEE-CCEEEEEECCCCCEE--EEEECCCCCCCCCCCCCCCCC
Q ss_conf 59959999889990999997699579999949--7999997-990999979999546--999428996567877434222
Q 002778 59 SPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENK--FSVLTYPVPQLAGQGAVGINV 133 (882)
Q Consensus 59 ~pttVrIWDLkTG~~V~tLkf~S~V~sI~~s~--riLAVsl-d~qI~IwDa~Tle~l--~tL~t~p~p~~~~~~~~g~~~ 133 (882)
-..+|.|||.+++++++++.....+.+|+|++ ++++++. ++.|.+||+.+.+.. ..+.....
T Consensus 40 d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~------------- 106 (432)
T d1qksa2 40 DAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE------------- 106 (432)
T ss_dssp TTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE-------------
T ss_pred CCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCC-------------
T ss_conf 9997999989998399997379971379988999999998289997899810898128899844889-------------
Q ss_pred CCEEEEECCCEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 31025774758999089707626788887657898878986899993078862000034340121001232223378999
Q 002778 134 GYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS 213 (882)
Q Consensus 134 ~~g~lAlgpRwLAYas~~~~iw~sG~vspq~lt~p~vs~s~Sp~~gsLVa~yA~essk~laagiiktlsky~~~llp~gs 213 (882)
+ +-+++ ++.+||++..+++
T Consensus 107 ---~-----~~~~~-----------------------s~~~SpDG~~l~v------------------------------ 125 (432)
T d1qksa2 107 ---A-----RSIET-----------------------SKMEGWEDKYAIA------------------------------ 125 (432)
T ss_dssp ---E-----EEEEE-----------------------CCSTTCTTTEEEE------------------------------
T ss_pred ---C-----CCEEE-----------------------ECCCCCCCCEEEE------------------------------
T ss_conf ---8-----77698-----------------------4321888888999------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCC-----------CCCEEEEEECCCCCEEEEEECCCCEE
Q ss_conf 8885579755422124645688964999979988189880248-----------98859999889999999998599989
Q 002778 214 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH-----------TSPISALCFDPSGTLLVTASVYGNNI 282 (882)
Q Consensus 214 ~s~~s~ss~~k~~~~~~~tgs~dG~V~IwDi~s~~~i~~l~aH-----------~spIsaLaFSPsGtlLATAS~dGt~I 282 (882)
++..++.|+|||..+++++..+..| .....++.|+|+|..++.+..+...|
T Consensus 126 ------------------s~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i 187 (432)
T d1qksa2 126 ------------------GAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI 187 (432)
T ss_dssp ------------------EEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred ------------------ECCCCCEEEEEECCCCCCEEEECCCCCCCCCEECCCCCCEEEEEECCCCCEEEEEECCCCEE
T ss_conf ------------------81789827999076554225402477643522016888505899878999899998168829
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEEC-CCEEEEEECCCC
Q ss_conf 999668886558999985446886307999972355772899999129999999928-990999977889
Q 002778 283 NIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS-KGTCHVFVLSPF 351 (882)
Q Consensus 283 rIfdI~p~~~~~~sG~~~~~~s~~~~~l~~L~RG~t~A~I~sIaFSpDs~~LAssS~-dGTVhIwdI~~~ 351 (882)
.+|+.... ....+..+. +...+.+++|+||++++++++. ++++.+++....
T Consensus 188 ~~~d~~~~---------------~~~~~~~i~---~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~ 239 (432)
T d1qksa2 188 LLVDYTDL---------------NNLKTTEIS---AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG 239 (432)
T ss_dssp EEEETTCS---------------SEEEEEEEE---CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred EEEECCCC---------------CCCEEEEEC---CCCCCCCCEECCCCCEEEEECCCCCEEEEEECCCC
T ss_conf 99984378---------------752279983---36754265388988799995166636777614452
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.65 E-value=5.6e-13 Score=90.83 Aligned_cols=269 Identities=14% Similarity=0.054 Sum_probs=143.4
Q ss_pred CCCEEEEEECCCCEEEEEEECC--CCEEEEEECC--CEEEEEE--CCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 5995999988999099999769--9579999949--7999997--99099997999954699942899656787743422
Q 002778 59 SPTAVRFYSFQSHCYEHVLRFR--SSVCMVRCSP--RIVAVGL--ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGIN 132 (882)
Q Consensus 59 ~pttVrIWDLkTG~~V~tLkf~--S~V~sI~~s~--riLAVsl--d~qI~IwDa~Tle~l~tL~t~p~p~~~~~~~~g~~ 132 (882)
.+++|.+||+++++.+++++.+ ..+.++.+++ +.+.|+. ++.|++||+.+.+.+.++.....+. ...
T Consensus 16 ~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~-------~~~ 88 (346)
T d1jmxb_ 16 YPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPG-------EVG 88 (346)
T ss_dssp TTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTT-------EEE
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCCEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCC-------CCC
T ss_conf 9997999999999899999948999704599978989999997899939999675671312310365434-------547
Q ss_pred CCCEEEEECC--CEEEEEC--------------CCEEECCC--CCCCCCCC----CCCCCCCCCCCCCCCCEEEEECCCH
Q ss_conf 2310257747--5899908--------------97076267--88887657----8988789868999930788620000
Q 002778 133 VGYGPMAVGP--RWLAYAS--------------NTLLLSNS--GRLSPQNL----TPSGVSPSTSPGGSSLVARYAMEHS 190 (882)
Q Consensus 133 ~~~g~lAlgp--RwLAYas--------------~~~~iw~s--G~vspq~l----t~p~vs~s~Sp~~gsLVa~yA~ess 190 (882)
.....++++| +++..+. ....+++. +.. ...+ .+..+.....+.++.+.+.......
T Consensus 89 ~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (346)
T d1jmxb_ 89 RSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE-AKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYK 167 (346)
T ss_dssp ECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG-BCCSEEEECCSSCCCEEECTTSCEEEESSSEEE
T ss_pred CCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCEE-EEEEEEEECCCCEEEEEECCCCEEEEECCCCEE
T ss_conf 7417999905888899970577521565146762489985256326-568873102474399995278789984796269
Q ss_pred HHHHCCC-CCCCC--CCCCC--CCCCCCCCCCCCCCCCCCCCCC------------CCCCCCCCEEEEEECCCCCEEE-E
Q ss_conf 3434012-10012--32223--3789998885579755422124------------6456889649999799881898-8
Q 002778 191 KQFAAGL-SKTLS--KYCQE--LLPDGSSSPVSPNSVWKVGRHA------------GADMDNAGIVVVKDFVTRAIIS-Q 252 (882)
Q Consensus 191 k~laagi-iktls--ky~~~--llp~gs~s~~s~ss~~k~~~~~------------~~tgs~dG~V~IwDi~s~~~i~-~ 252 (882)
..+..+. ...+. ..... ..+.+... ............. ..++...+.+.+||+.++.... .
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (346)
T d1jmxb_ 168 MDVKTGKYTVALPLRNWNRKGYSAPDVLYF-WPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQE 246 (346)
T ss_dssp ECTTTCCEEEEECSTTCCCTTBCCCBCCCC-CCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEE
T ss_pred EECCCCCEEEEEECCCCCCCEEEECCCCEE-EEEECCCCCEEEEEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEE
T ss_conf 980699789999648986623771255289-9986499816765123111267325754047834999977788368787
Q ss_pred ECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCC
Q ss_conf 02489885999988999999999859998999966888655899998544688630799997235577289999912999
Q 002778 253 FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ 332 (882)
Q Consensus 253 l~aH~spIsaLaFSPsGtlLATAS~dGt~IrIfdI~p~~~~~~sG~~~~~~s~~~~~l~~L~RG~t~A~I~sIaFSpDs~ 332 (882)
+..|...+..+.+++++.+++.... +. |.+||... + ..+..+..+ ..+.+++||||++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~-v~v~d~~~-------~----------~~~~~~~~~---~~~~~va~s~DG~ 304 (346)
T d1jmxb_ 247 FADLTELYFTGLRSPKDPNQIYGVL-NR-LAKYDLKQ-------R----------KLIKAANLD---HTYYCVAFDKKGD 304 (346)
T ss_dssp EEECSSCEEEEEECSSCTTEEEEEE-SE-EEEEETTT-------T----------EEEEEEECS---SCCCEEEECSSSS
T ss_pred EECCCCEEEEEEEECCCCEEEEECC-CE-EEEEECCC-------C----------CEEEEECCC---CCEEEEEECCCCC
T ss_conf 6315660688897179978999429-83-89998999-------9----------399997499---9778999968999
Q ss_pred EEEEEECCCEEEEEECCCCCCCCCCC
Q ss_conf 99999289909999778899853223
Q 002778 333 WIAIVSSKGTCHVFVLSPFGGDSGFQ 358 (882)
Q Consensus 333 ~LAssS~dGTVhIwdI~~~gg~~~l~ 358 (882)
+|++++.+++++|||+.+......++
T Consensus 305 ~l~v~~~d~~v~v~D~~t~~~i~~i~ 330 (346)
T d1jmxb_ 305 KLYLGGTFNDLAVFNPDTLEKVKNIK 330 (346)
T ss_dssp CEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred EEEEEECCCCEEEEECCCCCEEEEEE
T ss_conf 99999489929999996587979998
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.64 E-value=1e-13 Score=95.29 Aligned_cols=94 Identities=9% Similarity=0.108 Sum_probs=38.5
Q ss_pred CEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEC-CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 64999979988189880248988599998899999999985-99989999668886558999985446886307999972
Q 002778 237 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV-YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 315 (882)
Q Consensus 237 G~V~IwDi~s~~~i~~l~aH~spIsaLaFSPsGtlLATAS~-dGt~IrIfdI~p~~~~~~sG~~~~~~s~~~~~l~~L~R 315 (882)
|.|.+||+..+..+. + .|...|.+++|+|||++|++++. +|..|++|+... + .+.++.
T Consensus 24 g~v~v~d~~~~~~~~-~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~-------~-----------~~~~~~- 82 (360)
T d1k32a3 24 GQAFIQDVSGTYVLK-V-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT-------G-----------KAEKFE- 82 (360)
T ss_dssp TEEEEECTTSSBEEE-C-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTT-------C-----------CEEECC-
T ss_pred CEEEEEECCCCCEEE-C-CCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC-------C-----------CEEEEE-
T ss_conf 969999899994899-1-699988889998999999999928998999998999-------9-----------488750-
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 3557728999991299999999289909999778899
Q 002778 316 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 352 (882)
Q Consensus 316 G~t~A~I~sIaFSpDs~~LAssS~dGTVhIwdI~~~g 352 (882)
+ +...|.+++||||+++|++++.++++++|++....
T Consensus 83 ~-~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 118 (360)
T d1k32a3 83 E-NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK 118 (360)
T ss_dssp C-CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred C-CCCEEEEEEECCCCCCCCEECCCCCCCCCCCCCCC
T ss_conf 8-97127741211454321000111110000012221
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.64 E-value=3.7e-13 Score=91.95 Aligned_cols=236 Identities=12% Similarity=0.011 Sum_probs=126.6
Q ss_pred CCCEEEEEECCCCE----EEEEEECCCCEEEEEECC---CEEEEEE-CCEEEEEECCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 59959999889990----999997699579999949---7999997-990999979999546999428996567877434
Q 002778 59 SPTAVRFYSFQSHC----YEHVLRFRSSVCMVRCSP---RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVG 130 (882)
Q Consensus 59 ~pttVrIWDLkTG~----~V~tLkf~S~V~sI~~s~---riLAVsl-d~qI~IwDa~Tle~l~tL~t~p~p~~~~~~~~g 130 (882)
.+++|++||+.++. ....+.|...|.+++|++ .+|+++. ++.|++|+..................
T Consensus 31 ~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~------- 103 (342)
T d1yfqa_ 31 WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLG------- 103 (342)
T ss_dssp TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSC-------
T ss_pred CCCEEEEEECCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCC-------
T ss_conf 9992999975699863689885589998899999589997899812653114542044320000011111111-------
Q ss_pred CCCCCEEEEECCCEEEEE--CCCEEECCC--CCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHCCCCCCCCCCCC
Q ss_conf 222310257747589990--897076267--8888765789887898689999307886200003434012100123222
Q 002778 131 INVGYGPMAVGPRWLAYA--SNTLLLSNS--GRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQ 206 (882)
Q Consensus 131 ~~~~~g~lAlgpRwLAYa--s~~~~iw~s--G~vspq~lt~p~vs~s~Sp~~gsLVa~yA~essk~laagiiktlsky~~ 206 (882)
.......+...++.. +....+|+. +..... ... .......
T Consensus 104 ---~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~-----------------~~~----------------~~~~~~~ 147 (342)
T d1yfqa_ 104 ---ICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVI-----------------AVK----------------NLNSNNT 147 (342)
T ss_dssp ---EEEEEEETTTEEEEEETTSEEEEECHHHHTTBCE-----------------EEE----------------ESCSSSS
T ss_pred ---CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEE-----------------EEC----------------CCCCCCC
T ss_conf ---1111111111111101222111020234443302-----------------300----------------0243001
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEE---EEECCCCCCEEEE-EECCCCCEEEEEECCCCEE
Q ss_conf 33789998885579755422124645688964999979988189---8802489885999-9889999999998599989
Q 002778 207 ELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII---SQFKAHTSPISAL-CFDPSGTLLVTASVYGNNI 282 (882)
Q Consensus 207 ~llp~gs~s~~s~ss~~k~~~~~~~tgs~dG~V~IwDi~s~~~i---~~l~aH~spIsaL-aFSPsGtlLATAS~dGt~I 282 (882)
. ............... ..+..+|.|++||+...... .....+...+.+. .+..++..+++++.+|. +
T Consensus 148 ~----~~~~~~~~~~~~~~~----~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~ 218 (342)
T d1yfqa_ 148 K----VKNKIFTMDTNSSRL----IVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR-V 218 (342)
T ss_dssp S----SCCCEEEEEECSSEE----EEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE-E
T ss_pred C----CEEEEEEEECCCCCE----EEECCCCCEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCCEEEEECCCCE-E
T ss_conf 2----000001000168702----465179847887605676341112102542210146763699987886548995-9
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEC-----CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCC
Q ss_conf 9996688865589999854468863079999723-----557728999991299999999289909999778899853
Q 002778 283 NIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG-----ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS 355 (882)
Q Consensus 283 rIfdI~p~~~~~~sG~~~~~~s~~~~~l~~L~RG-----~t~A~I~sIaFSpDs~~LAssS~dGTVhIwdI~~~gg~~ 355 (882)
.+|+....... +...........+. .+...|.+|+|+|++++||+++.||+|+||++.......
T Consensus 219 ~v~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~ 287 (342)
T d1yfqa_ 219 AVEFFDDQGDD---------YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK 287 (342)
T ss_dssp EEEECCTTCCS---------TTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE
T ss_pred EEEEECCCCCE---------EECCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEE
T ss_conf 99980598640---------1112351256555314777623543159966984479998799989999999894988
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.53 E-value=7.4e-14 Score=96.07 Aligned_cols=109 Identities=10% Similarity=0.086 Sum_probs=48.8
Q ss_pred CCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 88964999979988189880248988599998899999999985999899996688865589999854468863079999
Q 002778 234 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 313 (882)
Q Consensus 234 s~dG~V~IwDi~s~~~i~~l~aH~spIsaLaFSPsGtlLATAS~dGt~IrIfdI~p~~~~~~sG~~~~~~s~~~~~l~~L 313 (882)
..+|.|+|||+.+++++.+|..|. .+..++|||||++|++++.+|+ +++||+... ....+.++
T Consensus 39 ~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~-v~vwd~~t~---------------~~~~~~~i 101 (426)
T d1hzua2 39 RDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDAR-IDMIDLWAK---------------EPTKVAEI 101 (426)
T ss_dssp TTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSE-EEEEETTSS---------------SCEEEEEE
T ss_pred CCCCEEEEEECCCCCEEEEEECCC-CEEEEEECCCCCEEEEEECCCC-EEEEECCCC---------------CEEEEEEE
T ss_conf 599979999999995999996899-8038999899999999958998-899975688---------------60489998
Q ss_pred EECCC-CCCEEEEEECCCCCEEEEE-ECCCEEEEEECCCCCCCCCCCC
Q ss_conf 72355-7728999991299999999-2899099997788998532235
Q 002778 314 HRGIT-SATIQDICFSHYSQWIAIV-SSKGTCHVFVLSPFGGDSGFQT 359 (882)
Q Consensus 314 ~RG~t-~A~I~sIaFSpDs~~LAss-S~dGTVhIwdI~~~gg~~~l~~ 359 (882)
.-+.. ...+.+++||||+++|+++ ..++++.+|+.........+..
T Consensus 102 ~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~ 149 (426)
T d1hzua2 102 KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVST 149 (426)
T ss_dssp ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEEC
T ss_pred ECCCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEEEC
T ss_conf 678887645885002688987999635897699985776412578622
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.53 E-value=8.4e-14 Score=95.74 Aligned_cols=113 Identities=12% Similarity=0.064 Sum_probs=86.8
Q ss_pred CCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 56889649999799881898802489885999988999999999859998999966888655899998544688630799
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 232 tgs~dG~V~IwDi~s~~~i~~l~aH~spIsaLaFSPsGtlLATAS~dGt~IrIfdI~p~~~~~~sG~~~~~~s~~~~~l~ 311 (882)
+.+.+|.|.|||..+++++..|..|. .+..++|||||++|++++.+|+ +++||+.+. ......
T Consensus 37 ~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~-v~~~d~~t~---------------~~~~~~ 99 (432)
T d1qksa2 37 TLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGK-VNMIDLWMK---------------EPTTVA 99 (432)
T ss_dssp EETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSE-EEEEETTSS---------------SCCEEE
T ss_pred EECCCCEEEEEECCCCCEEEEEECCC-CEEEEEECCCCCEEEEECCCCC-EEEEEEECC---------------CCEEEE
T ss_conf 97699979999899983999973799-7137998899999999828999-789981089---------------812889
Q ss_pred EEEECCCC-CCEEEEEECCCCCEE-EEEECCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 99723557-728999991299999-999289909999778899853223566
Q 002778 312 KLHRGITS-ATIQDICFSHYSQWI-AIVSSKGTCHVFVLSPFGGDSGFQTLS 361 (882)
Q Consensus 312 ~L~RG~t~-A~I~sIaFSpDs~~L-AssS~dGTVhIwdI~~~gg~~~l~~H~ 361 (882)
++..|... ..+.+.+||||+++| ++++.++++.||+.........+..|.
T Consensus 100 ~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~ 151 (432)
T d1qksa2 100 EIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRG 151 (432)
T ss_dssp EEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCE
T ss_pred EEECCCCCCCEEEECCCCCCCCEEEEECCCCCEEEEEECCCCCCEEEECCCC
T ss_conf 9844889877698432188888899981789827999076554225402477
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.47 E-value=1.5e-12 Score=88.38 Aligned_cols=103 Identities=12% Similarity=0.071 Sum_probs=48.9
Q ss_pred CCCCCEEEEEECCCCC----EEEEECCC--CCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 6889649999799881----89880248--98859999889999999998599989999668886558999985446886
Q 002778 233 MDNAGIVVVKDFVTRA----IISQFKAH--TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS 306 (882)
Q Consensus 233 gs~dG~V~IwDi~s~~----~i~~l~aH--~spIsaLaFSPsGtlLATAS~dGt~IrIfdI~p~~~~~~sG~~~~~~s~~ 306 (882)
+..++.+++||+.... .......+ ......+.+.+.+..+++++.+|+ |++|++.... .
T Consensus 118 ~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-i~~~~~~~~~-------------~- 182 (342)
T d1yfqa_ 118 ASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQ-VQWFRLPLCE-------------D- 182 (342)
T ss_dssp EETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTE-EEEEESSCCT-------------T-
T ss_pred CCCCCCCCEEECCCCCCCEEEECCCCCCCCCCEEEEEEEECCCCCEEEECCCCC-EEEEECCCCC-------------C-
T ss_conf 012221110202344433023000243001200000100016870246517984-7887605676-------------3-
Q ss_pred CCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC
Q ss_conf 307999972355772899999129999999928990999977889
Q 002778 307 HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 307 ~~~l~~L~RG~t~A~I~sIaFSpDs~~LAssS~dGTVhIwdI~~~ 351 (882)
........+..........++.++..+++++.+|.+.+|.+...
T Consensus 183 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~ 226 (342)
T d1yfqa_ 183 -DNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp -CCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred -CCEEEEECCCCCCEEEEEEECCCCCEEEEECCCCEEEEEEECCC
T ss_conf -41112102542210146763699987886548995999980598
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.43 E-value=1.4e-10 Score=76.73 Aligned_cols=57 Identities=12% Similarity=0.287 Sum_probs=41.2
Q ss_pred CCCEEEEEECCCC---EEEEEEECCCCEEEEEECC--CEEEEEE--CCEEEEEECCCCCEEEEE
Q ss_conf 5995999988999---0999997699579999949--7999997--990999979999546999
Q 002778 59 SPTAVRFYSFQSH---CYEHVLRFRSSVCMVRCSP--RIVAVGL--ATQIYCFDALTLENKFSV 115 (882)
Q Consensus 59 ~pttVrIWDLkTG---~~V~tLkf~S~V~sI~~s~--riLAVsl--d~qI~IwDa~Tle~l~tL 115 (882)
...+|++|++.+. +.+.++.+.+.+..+.|++ +.|.++. ++.|++|++.+.....++
T Consensus 12 ~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~ 75 (333)
T d1ri6a_ 12 ESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF 75 (333)
T ss_dssp GGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred CCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCEEE
T ss_conf 9993899998399976999997579988689995897999999778996999999689870798
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.39 E-value=1.6e-09 Score=70.45 Aligned_cols=60 Identities=8% Similarity=-0.151 Sum_probs=42.7
Q ss_pred CCEEEEEECCCCEEEEEEECCCCEEEEEECC--CEEEEEE-----------CCEEEEEECCCCCEEEEEECCCC
Q ss_conf 9959999889990999997699579999949--7999997-----------99099997999954699942899
Q 002778 60 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL-----------ATQIYCFDALTLENKFSVLTYPV 120 (882)
Q Consensus 60 pttVrIWDLkTG~~V~tLkf~S~V~sI~~s~--riLAVsl-----------d~qI~IwDa~Tle~l~tL~t~p~ 120 (882)
...|.+||..+++.+.++.-... ..+.+++ +.++++. ++.|.+||+.+++.+..+..+..
T Consensus 46 ~~~v~v~D~~tg~~~~~~~~~~~-~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~ 118 (373)
T d2madh_ 46 IIQQWVLDAGSGSILGHVNGGFL-PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDA 118 (373)
T ss_pred CCEEEEEECCCCCEEEEEECCCC-CCEEECCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCC
T ss_conf 76599998999979999957988-60798689998999960577532124531899997778938889726885
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.32 E-value=6.2e-10 Score=72.85 Aligned_cols=263 Identities=10% Similarity=-0.015 Sum_probs=128.1
Q ss_pred CCCEEEEEECCCCEEEEEEECCCCEEEEEECC--CEEEEEE-----------CCEEEEEECCCCCEEEEEECCCCCCCCC
Q ss_conf 59959999889990999997699579999949--7999997-----------9909999799995469994289965678
Q 002778 59 SPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL-----------ATQIYCFDALTLENKFSVLTYPVPQLAG 125 (882)
Q Consensus 59 ~pttVrIWDLkTG~~V~tLkf~S~V~sI~~s~--riLAVsl-----------d~qI~IwDa~Tle~l~tL~t~p~p~~~~ 125 (882)
..+.|.+||..+++.+.++.-. ....+++++ +.|+|+. ++.|.+||+.+++.+..+.....+..
T Consensus 26 ~~~~v~v~D~~tg~~~~~~~~g-~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~-- 102 (355)
T d2bbkh_ 26 AVTQQFVIDGEAGRVIGMIDGG-FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRF-- 102 (355)
T ss_dssp SSEEEEEEETTTTEEEEEEEEC-SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCC--
T ss_pred CCCEEEEEECCCCCEEEEEECC-CCCCEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEE--
T ss_conf 7671999999999499999899-9985699489999999967776420158999899999999979889805886403--
Q ss_pred CCCCCCCCCCEEEEECC--CEEEEEC----CCEEECCCCCCC-CCCCCCCC----------CCCCCCCCCCCCEEEEECC
Q ss_conf 77434222310257747--5899908----970762678888-76578988----------7898689999307886200
Q 002778 126 QGAVGINVGYGPMAVGP--RWLAYAS----NTLLLSNSGRLS-PQNLTPSG----------VSPSTSPGGSSLVARYAME 188 (882)
Q Consensus 126 ~~~~g~~~~~g~lAlgp--RwLAYas----~~~~iw~sG~vs-pq~lt~p~----------vs~s~Sp~~gsLVa~yA~e 188 (882)
.. +. ....+++++ +++.... ....+|+..... .+.+..+. .....++++..+.......
T Consensus 103 -~~-~~--~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~ 178 (355)
T d2bbkh_ 103 -LV-GT--YPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTE 178 (355)
T ss_dssp -CB-SC--CGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSS
T ss_pred -EC-CC--CCCEEEEECCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCEEEECCCCCEEEECCCCCEEEEEECCC
T ss_conf -11-79--873499933887157732798820454305788376677058740473069963699938999899983478
Q ss_pred CHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEE--EEECCCC---------
Q ss_conf 00343401210012322233789998885579755422124645688964999979988189--8802489---------
Q 002778 189 HSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII--SQFKAHT--------- 257 (882)
Q Consensus 189 ssk~laagiiktlsky~~~llp~gs~s~~s~ss~~k~~~~~~~tgs~dG~V~IwDi~s~~~i--~~l~aH~--------- 257 (882)
....... ......... .........+...... ....+|.+.+|++..+... .....+.
T Consensus 179 ~~~~~~~--~~~~~~~~~-----~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (355)
T d2bbkh_ 179 GTPEITH--TEVFHPEDE-----FLINHPAYSQKAGRLV----WPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWR 247 (355)
T ss_dssp SCCEEEE--CCCCSCTTS-----CBCSCCEEETTTTEEE----EEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEE
T ss_pred CEEEEEE--CCCCCCEEC-----CEEEECCCCCCCCEEE----EECCCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEE
T ss_conf 7379996--243330001-----1061021538997388----7469982999965899079984457844126854330
Q ss_pred -CCEEEEEECCCCCEEEEEECCC---------CEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEE
Q ss_conf -8859999889999999998599---------989999668886558999985446886307999972355772899999
Q 002778 258 -SPISALCFDPSGTLLVTASVYG---------NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF 327 (882)
Q Consensus 258 -spIsaLaFSPsGtlLATAS~dG---------t~IrIfdI~p~~~~~~sG~~~~~~s~~~~~l~~L~RG~t~A~I~sIaF 327 (882)
.....++++++|+.++.++.++ ..|.+||... + ..+..+..+ ..+.+++|
T Consensus 248 p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t-------~----------~~~~~~~~~---~~~~~~a~ 307 (355)
T d2bbkh_ 248 PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT-------G----------ERLAKFEMG---HEIDSINV 307 (355)
T ss_dssp ECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT-------C----------CEEEEEEEE---EEECEEEE
T ss_pred CCCEEEEEEECCCCEEEEEECCCCCEEECCCCCEEEEEECCC-------C----------CEEEEECCC---CCEEEEEE
T ss_conf 351089998079976788740687126517997599986788-------8----------498996689---98779999
Q ss_pred CCCCC--EEEEEECCCEEEEEECCCCCCCCCCCC
Q ss_conf 12999--999992899099997788998532235
Q 002778 328 SHYSQ--WIAIVSSKGTCHVFVLSPFGGDSGFQT 359 (882)
Q Consensus 328 SpDs~--~LAssS~dGTVhIwdI~~~gg~~~l~~ 359 (882)
|||++ +++++..+++++|||+.+......+..
T Consensus 308 spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~ 341 (355)
T d2bbkh_ 308 SQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ 341 (355)
T ss_dssp CCSSSCEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred CCCCCEEEEEEECCCCEEEEEECCCCCEEEEEEC
T ss_conf 2899969999978999899999999989999928
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.24 E-value=3.1e-09 Score=68.72 Aligned_cols=24 Identities=8% Similarity=-0.034 Sum_probs=18.4
Q ss_pred EEECCEEEEEECCCCCEEEEEECC
Q ss_conf 997990999979999546999428
Q 002778 95 VGLATQIYCFDALTLENKFSVLTY 118 (882)
Q Consensus 95 Vsld~qI~IwDa~Tle~l~tL~t~ 118 (882)
...++.|.+||+.+++.+.++...
T Consensus 8 ~~~~~~v~v~D~~t~~~~~~i~~g 31 (301)
T d1l0qa2 8 NSESDNISVIDVTSNKVTATIPVG 31 (301)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECS
T ss_pred ECCCCEEEEEECCCCEEEEEEECC
T ss_conf 789998999999999599999889
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.17 E-value=2.2e-08 Score=63.68 Aligned_cols=102 Identities=11% Similarity=0.086 Sum_probs=69.6
Q ss_pred CCCCEEEEEECCCCCEEEEECCCCC-----CEEEEEECCCCCEEEEEECC-----------CCEEEEEECCCCCCCCCCC
Q ss_conf 8896499997998818988024898-----85999988999999999859-----------9989999668886558999
Q 002778 234 DNAGIVVVKDFVTRAIISQFKAHTS-----PISALCFDPSGTLLVTASVY-----------GNNINIFRIMPSCMRSGSG 297 (882)
Q Consensus 234 s~dG~V~IwDi~s~~~i~~l~aH~s-----pIsaLaFSPsGtlLATAS~d-----------Gt~IrIfdI~p~~~~~~sG 297 (882)
..+|.|.+||+.+++.+..+..+.. .+..++|+|+|++++.+..+ ...+.+|+... +
T Consensus 53 ~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~-------~ 125 (337)
T d1pbyb_ 53 NKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET-------L 125 (337)
T ss_dssp TTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTT-------T
T ss_pred CCCCEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEEECCCCCCCEEECCCCC-------C
T ss_conf 899949999999992988872477731254025489868775799950477620342034555212035667-------7
Q ss_pred CCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCC
Q ss_conf 985446886307999972355772899999129999999928990999977889985322
Q 002778 298 NHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGF 357 (882)
Q Consensus 298 ~~~~~~s~~~~~l~~L~RG~t~A~I~sIaFSpDs~~LAssS~dGTVhIwdI~~~gg~~~l 357 (882)
..+..+. ....+..++|++|++++++++. ...+|+.........+
T Consensus 126 ----------~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~ 170 (337)
T d1pbyb_ 126 ----------SRRKAFE---APRQITMLAWARDGSKLYGLGR--DLHVMDPEAGTLVEDK 170 (337)
T ss_dssp ----------EEEEEEE---CCSSCCCEEECTTSSCEEEESS--SEEEEETTTTEEEEEE
T ss_pred ----------EEEEECC---CCCCCEEEEECCCCCEEEEECC--CCCEEEEECCCEEEEE
T ss_conf ----------5988414---5687218998688888999717--7505663037278886
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.10 E-value=6.3e-10 Score=72.79 Aligned_cols=104 Identities=15% Similarity=0.150 Sum_probs=45.0
Q ss_pred CCCEEEEEECCCCCEEE--EECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 89649999799881898--8024898859999889999999998599989999668886558999985446886307999
Q 002778 235 NAGIVVVKDFVTRAIIS--QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 312 (882)
Q Consensus 235 ~dG~V~IwDi~s~~~i~--~l~aH~spIsaLaFSPsGtlLATAS~dGt~IrIfdI~p~~~~~~sG~~~~~~s~~~~~l~~ 312 (882)
.++.|.+|+........ ....+...+.++.|+|+|++++.++..+..|.+|+.... + ........
T Consensus 103 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~------~-------~~~~~~~~ 169 (333)
T d1ri6a_ 103 NAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDD------G-------HLVAQDPA 169 (333)
T ss_dssp TTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTT------S-------CEEEEEEE
T ss_pred CCCCEEEECCCCCCCEECCCCCCCCCCCEEEEEEECCEEEECCCCCCCEEEEEEECCC------C-------CCEEEECE
T ss_conf 8883022001110000001003778531498863010131025655420568973268------7-------41001000
Q ss_pred EEECCCCCCEEEEEECCCCCEEEEEE-CCCEEEEEECCCC
Q ss_conf 97235577289999912999999992-8990999977889
Q 002778 313 LHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPF 351 (882)
Q Consensus 313 L~RG~t~A~I~sIaFSpDs~~LAssS-~dGTVhIwdI~~~ 351 (882)
............++|++++.++.... ..++..+|++...
T Consensus 170 ~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~ 209 (333)
T d1ri6a_ 170 EVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDP 209 (333)
T ss_dssp EEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCT
T ss_pred EEEEECCCCCCEEEEECCCEEEEEECCCCCCEEEEEECCC
T ss_conf 1334038875279996020147862046672178851035
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.00 E-value=8.8e-08 Score=60.12 Aligned_cols=255 Identities=10% Similarity=-0.050 Sum_probs=116.3
Q ss_pred CEEEEEECCCCEEEEEEECCCCEEEEEECC--CEEEEEE-----------CCEEEEEECCCCCEEEEEECCCCCCCCCCC
Q ss_conf 959999889990999997699579999949--7999997-----------990999979999546999428996567877
Q 002778 61 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL-----------ATQIYCFDALTLENKFSVLTYPVPQLAGQG 127 (882)
Q Consensus 61 ttVrIWDLkTG~~V~tLkf~S~V~sI~~s~--riLAVsl-----------d~qI~IwDa~Tle~l~tL~t~p~p~~~~~~ 127 (882)
..|.+||..+++.+.++..... -.+.+++ +.++++. ++.|.+||+.+++.+..+..+..+...
T Consensus 46 ~~~~~~d~~~~~~~~~~~~~~~-~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~--- 121 (368)
T d1mdah_ 46 TENWVSCAGCGVTLGHSLGAFL-SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFS--- 121 (368)
T ss_dssp EEEEEEETTTTEEEEEEEECTT-CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCC---
T ss_pred CEEEEEECCCCCEEEEEECCCC-CCCEECCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEC---
T ss_conf 2179970899837788857877-751398999889997556764010356786999989999383064378542102---
Q ss_pred CCCCCCCCEEEEECC--CEEEEEC---CCEEECCCCCCCC-CCCCCCCCC----------CCCCCCCCCCEEEEECCCHH
Q ss_conf 434222310257747--5899908---9707626788887-657898878----------98689999307886200003
Q 002778 128 AVGINVGYGPMAVGP--RWLAYAS---NTLLLSNSGRLSP-QNLTPSGVS----------PSTSPGGSSLVARYAMEHSK 191 (882)
Q Consensus 128 ~~g~~~~~g~lAlgp--RwLAYas---~~~~iw~sG~vsp-q~lt~p~vs----------~s~Sp~~gsLVa~yA~essk 191 (882)
.+. ....++++| ++|+++. ....+|+.....+ ..+..+... ...++++..++..+. +..+
T Consensus 122 -~g~--~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~-~~~~ 197 (368)
T d1mdah_ 122 -VGP--RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLA-AAPA 197 (368)
T ss_dssp -BSC--CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECC-SSCC
T ss_pred -CCC--CCCCEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCEECCCCCCEEEEECCCCCEEEEEEC-CCCE
T ss_conf -468--864058878998999996899859999899893867860467523746998239999489988999826-8962
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEE--ECCCC----------CC
Q ss_conf 4340121001232223378999888557975542212464568896499997998818988--02489----------88
Q 002778 192 QFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQ--FKAHT----------SP 259 (882)
Q Consensus 192 ~laagiiktlsky~~~llp~gs~s~~s~ss~~k~~~~~~~tgs~dG~V~IwDi~s~~~i~~--l~aH~----------sp 259 (882)
.......+.+. ..........+...+... ....|.+.+++......... ...+. ..
T Consensus 198 ~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 265 (368)
T d1mdah_ 198 AAGIVGAQCTG------AQNCSSQAAQANYPGMLV------WAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAG 265 (368)
T ss_dssp CCEECCCCSCT------TSCBCSCCEEETTTTEEE------ECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECS
T ss_pred EEEEEECCCCC------CCCCCEEECCCCCCCEEE------EECCCCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCC
T ss_conf 66653031113------566646601015586899------934897799960699369976024654304554012788
Q ss_pred EEEEEECCCCCEEEEEECCC--------CEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCC
Q ss_conf 59999889999999998599--------9899996688865589999854468863079999723557728999991299
Q 002778 260 ISALCFDPSGTLLVTASVYG--------NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS 331 (882)
Q Consensus 260 IsaLaFSPsGtlLATAS~dG--------t~IrIfdI~p~~~~~~sG~~~~~~s~~~~~l~~L~RG~t~A~I~sIaFSpDs 331 (882)
...++++++++.+..+..++ ..|.+||... + ..+..+..+ ..+.+++||||+
T Consensus 266 ~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t-------~----------~~~~~~~~~---~~~~~~a~spDG 325 (368)
T d1mdah_ 266 FQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV-------G----------QTSGPISNG---HDSDAIIAAQDG 325 (368)
T ss_dssp SSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS-------C----------CEEECCEEE---EEECEEEECCSS
T ss_pred CEEEEECCCCCEEEEEECCCCCEEECCCCEEEEEECCC-------C----------CEEEEECCC---CCEEEEEECCCC
T ss_conf 35688717998799983589733405886499998999-------9----------486895589---965179999899
Q ss_pred CE--EEEEECCCEEEEEECCCCCCCC
Q ss_conf 99--9999289909999778899853
Q 002778 332 QW--IAIVSSKGTCHVFVLSPFGGDS 355 (882)
Q Consensus 332 ~~--LAssS~dGTVhIwdI~~~gg~~ 355 (882)
+. +++...+++++|||..+.+...
T Consensus 326 ~~~ly~s~~~~~~v~v~D~~tgk~~~ 351 (368)
T d1mdah_ 326 ASDNYANSAGTEVLDIYDAASDQDQS 351 (368)
T ss_dssp SCEEEEEETTTTEEEEEESSSCEEEE
T ss_pred CEEEEEEECCCCEEEEEECCCCCEEE
T ss_conf 98999994899969999899997999
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.97 E-value=3.8e-08 Score=62.24 Aligned_cols=108 Identities=12% Similarity=0.081 Sum_probs=65.7
Q ss_pred CCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 89649999799881898802489885999988999999999859998999966888655899998544688630799997
Q 002778 235 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 314 (882)
Q Consensus 235 ~dG~V~IwDi~s~~~i~~l~aH~spIsaLaFSPsGtlLATAS~dGt~IrIfdI~p~~~~~~sG~~~~~~s~~~~~l~~L~ 314 (882)
..|.+.|||+.+++ +..+..|...+....|||||+++|.... ..+.+|+.......... ........+...
T Consensus 90 ~~~~~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~~~--~~l~~~~~~~g~~~~~t------~~~~~~~~~~g~ 160 (470)
T d2bgra1 90 YTASYDIYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYVWN--NDIYVKIEPNLPSYRIT------WTGKEDIIYNGI 160 (470)
T ss_dssp EEEEEEEEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEEET--TEEEEESSTTSCCEECC------SCCBTTTEEESB
T ss_pred CCCEEEEEECCCCC-CCCCCCCCCCCCCCCCCCCCCEEEEEEC--CCCEEEECCCCCEEEEE------ECCCCCCCCCCC
T ss_conf 67349999898885-1312468742310101467641357514--64137988999465321------014777405354
Q ss_pred EC-----CCCCCEEEEEECCCCCEEEEEECCCE-EEEEECCCC
Q ss_conf 23-----55772899999129999999928990-999977889
Q 002778 315 RG-----ITSATIQDICFSHYSQWIAIVSSKGT-CHVFVLSPF 351 (882)
Q Consensus 315 RG-----~t~A~I~sIaFSpDs~~LAssS~dGT-VhIwdI~~~ 351 (882)
.. ........+.|||||++||....|.+ +..|.+...
T Consensus 161 ~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~ 203 (470)
T d2bgra1 161 TDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFY 203 (470)
T ss_dssp CCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEEC
T ss_pred CCEEEEEEECCCCCCCEECCCCCCCCEEEECCCCCCEEEEEEE
T ss_conf 3201121004776530799998722026863776706998766
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=98.97 E-value=2.1e-08 Score=63.83 Aligned_cols=103 Identities=6% Similarity=-0.047 Sum_probs=49.5
Q ss_pred CCCEEEEEECCCCCEEEEECCCCC------CEEEEEECCCCCEEEEEECC-----------CCEEEEEECCCCCCCCCCC
Q ss_conf 896499997998818988024898------85999988999999999859-----------9989999668886558999
Q 002778 235 NAGIVVVKDFVTRAIISQFKAHTS------PISALCFDPSGTLLVTASVY-----------GNNINIFRIMPSCMRSGSG 297 (882)
Q Consensus 235 ~dG~V~IwDi~s~~~i~~l~aH~s------pIsaLaFSPsGtlLATAS~d-----------Gt~IrIfdI~p~~~~~~sG 297 (882)
.++.|.+||+.+++.+..+..... .+..++|+|||++|+.++.+ ...+.+|+....
T Consensus 60 ~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~------- 132 (346)
T d1jmxb_ 60 HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADG------- 132 (346)
T ss_dssp TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGG-------
T ss_pred CCCCEEEEECCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCC-------
T ss_conf 9993999967567131231036543454774179999058888999705775215651467624899852563-------
Q ss_pred CCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCC
Q ss_conf 985446886307999972355772899999129999999928990999977889985322
Q 002778 298 NHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGF 357 (882)
Q Consensus 298 ~~~~~~s~~~~~l~~L~RG~t~A~I~sIaFSpDs~~LAssS~dGTVhIwdI~~~gg~~~l 357 (882)
.....+..+.....+..+.+++|++.++.+ +.+++|++.+......+
T Consensus 133 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 179 (346)
T d1jmxb_ 133 ----------LEAKPVRTFPMPRQVYLMRAADDGSLYVAG---PDIYKMDVKTGKYTVAL 179 (346)
T ss_dssp ----------GGBCCSEEEECCSSCCCEEECTTSCEEEES---SSEEEECTTTCCEEEEE
T ss_pred ----------EEEEEEEEEECCCCEEEEEECCCCEEEEEC---CCCEEEECCCCCEEEEE
T ss_conf ----------265688731024743999952787899847---96269980699789999
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.86 E-value=7.9e-07 Score=54.48 Aligned_cols=18 Identities=22% Similarity=-0.064 Sum_probs=9.8
Q ss_pred CEEEEEECCCCCEEEEEE
Q ss_conf 909999799995469994
Q 002778 99 TQIYCFDALTLENKFSVL 116 (882)
Q Consensus 99 ~qI~IwDa~Tle~l~tL~ 116 (882)
.+|++||+.+++.+.++.
T Consensus 47 ~~v~v~D~~tg~~~~~~~ 64 (373)
T d2madh_ 47 IQQWVLDAGSGSILGHVN 64 (373)
T ss_pred CEEEEEECCCCCEEEEEE
T ss_conf 659999899997999995
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.67 E-value=2e-06 Score=52.08 Aligned_cols=29 Identities=21% Similarity=-0.001 Sum_probs=17.1
Q ss_pred CCCEEEEEE------CCEEEEEECCCCCEEEEEEC
Q ss_conf 497999997------99099997999954699942
Q 002778 89 SPRIVAVGL------ATQIYCFDALTLENKFSVLT 117 (882)
Q Consensus 89 s~riLAVsl------d~qI~IwDa~Tle~l~tL~t 117 (882)
+.+.+.|+. ..+|++||+.+++.+.++..
T Consensus 12 dg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~ 46 (355)
T d2bbkh_ 12 DARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG 46 (355)
T ss_dssp CTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE
T ss_pred CCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEEC
T ss_conf 99999998266477767199999999949999989
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.58 E-value=4.4e-07 Score=55.99 Aligned_cols=38 Identities=13% Similarity=-0.125 Sum_probs=17.2
Q ss_pred CEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEE
Q ss_conf 6499997998818988024898859999889999999998
Q 002778 237 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTAS 276 (882)
Q Consensus 237 G~V~IwDi~s~~~i~~l~aH~spIsaLaFSPsGtlLATAS 276 (882)
..|.+||..+++.+.++..+..+ .++|+|||+.|+.++
T Consensus 46 ~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~ 83 (368)
T d1mdah_ 46 TENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALAS 83 (368)
T ss_dssp EEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEE
T ss_pred CEEEEEECCCCCEEEEEECCCCC--CCEECCCCCEEEEEC
T ss_conf 21799708998377888578777--513989998899975
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.52 E-value=5.8e-07 Score=55.28 Aligned_cols=96 Identities=11% Similarity=0.101 Sum_probs=67.4
Q ss_pred CCCEEEEEECCCCCEEEEE-----CCCCCCEEEEEECCCCCEEEEEEC---------CCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 8964999979988189880-----248988599998899999999985---------99989999668886558999985
Q 002778 235 NAGIVVVKDFVTRAIISQF-----KAHTSPISALCFDPSGTLLVTASV---------YGNNINIFRIMPSCMRSGSGNHK 300 (882)
Q Consensus 235 ~dG~V~IwDi~s~~~i~~l-----~aH~spIsaLaFSPsGtlLATAS~---------dGt~IrIfdI~p~~~~~~sG~~~ 300 (882)
.+|.+.+||+.+++....+ ..|...|.+..|||||++||.++. +| .+.||++.. +
T Consensus 34 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~-~~~l~d~~~-------~--- 102 (470)
T d2bgra1 34 QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA-SYDIYDLNK-------R--- 102 (470)
T ss_dssp SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEE-EEEEEETTT-------T---
T ss_pred CCCCEEEEECCCCCEEEEECHHHHHHCCCCCCEEEECCCCCEEEEEECCCCEEEECCCC-EEEEEECCC-------C---
T ss_conf 59949999889997899970156443167654059989889799997771000104673-499998988-------8---
Q ss_pred CCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 4468863079999723557728999991299999999289909999778899
Q 002778 301 YDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 352 (882)
Q Consensus 301 ~~~s~~~~~l~~L~RG~t~A~I~sIaFSpDs~~LAssS~dGTVhIwdI~~~g 352 (882)
.+..+. + .+..+..++|||||++||... ++.+.+|++....
T Consensus 103 --------~~~~l~-~-~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~ 143 (470)
T d2bgra1 103 --------QLITEE-R-IPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLP 143 (470)
T ss_dssp --------EECCSS-C-CCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSC
T ss_pred --------CCCCCC-C-CCCCCCCCCCCCCCCEEEEEE-CCCCEEEECCCCC
T ss_conf --------513124-6-874231010146764135751-4641379889994
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.49 E-value=1e-05 Score=47.96 Aligned_cols=83 Identities=16% Similarity=0.216 Sum_probs=55.9
Q ss_pred CCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEE
Q ss_conf 88599998899999999985999899996688865589999854468863079999723557728999991299999999
Q 002778 258 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV 337 (882)
Q Consensus 258 spIsaLaFSPsGtlLATAS~dGt~IrIfdI~p~~~~~~sG~~~~~~s~~~~~l~~L~RG~t~A~I~sIaFSpDs~~LAss 337 (882)
.-+..++|+|+|++|+.++.....|.+|++... | .........-.........++|+||++++.+.
T Consensus 145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~------g--------~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~ 210 (365)
T d1jofa_ 145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLAS------G--------EVELVGSVDAPDPGDHPRWVAMHPTGNYLYAL 210 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTT------S--------CEEEEEEEECSSTTCCEEEEEECTTSSEEEEE
T ss_pred CCCEEEEECCCCCEEEEEECCCCEEEEEECCCC------C--------CEEECCCEEECCCCCCEEEEEECCCCCEEEEE
T ss_conf 811597888999989982079987999970688------7--------16652511112788740899988998669995
Q ss_pred -ECCCEEEEEECCCCCCC
Q ss_conf -28990999977889985
Q 002778 338 -SSKGTCHVFVLSPFGGD 354 (882)
Q Consensus 338 -S~dGTVhIwdI~~~gg~ 354 (882)
-.++++.+|+++..+..
T Consensus 211 ~e~~~~V~v~~~~~~~~~ 228 (365)
T d1jofa_ 211 MEAGNRICEYVIDPATHM 228 (365)
T ss_dssp ETTTTEEEEEEECTTTCC
T ss_pred CCCCCEEEEEEECCCCCE
T ss_conf 158998999995598753
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.27 E-value=4.4e-05 Score=44.16 Aligned_cols=105 Identities=9% Similarity=0.081 Sum_probs=55.6
Q ss_pred CCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 96499997998818988024898859999889999999998599989999668886558999985446886307999972
Q 002778 236 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 315 (882)
Q Consensus 236 dG~V~IwDi~s~~~i~~l~aH~spIsaLaFSPsGtlLATAS~dGt~IrIfdI~p~~~~~~sG~~~~~~s~~~~~l~~L~R 315 (882)
++.+.|++.....++..++...+| ..+.++|||+++..++.....+.|||+..-...- .+. .+. ......+..-
T Consensus 237 ~~v~vvd~~~~~~v~~~IPvgksP-hGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~-~~~--~~~--~~~~~~~~~~ 310 (441)
T d1qnia2 237 SKVPVVDGRGESEFTRYIPVPKNP-HGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLF-EDK--IEL--RDTIVAEPEL 310 (441)
T ss_dssp CCCCEEECSSSCSSEEEECCBSSC-CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHT-TTS--SCG--GGGEEECCBC
T ss_pred CCCEEEECCCCCCEEEEEECCCCC-CCCEECCCCCEEEEECCCCCCEEEEEEEHHHHHH-HCC--CCC--CEEEEEECCC
T ss_conf 982899803687068997179886-6726899987899907759938999832244575-256--884--2479960145
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCEEEEEECC
Q ss_conf 3557728999991299999999289909999778
Q 002778 316 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 349 (882)
Q Consensus 316 G~t~A~I~sIaFSpDs~~LAssS~dGTVhIwdI~ 349 (882)
|. .....+|.++++.+.+...|.++..|++.
T Consensus 311 gl---gplh~~fd~~g~~yts~~~ds~v~kw~~~ 341 (441)
T d1qnia2 311 GL---GPLHTTFDGRGNAYTTLFIDSQVCKWNIA 341 (441)
T ss_dssp CS---CEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred CC---CCCCCEECCCCEEEECCCCCCEEEEECCC
T ss_conf 54---76652265785599852443168972354
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.58 E-value=0.0011 Score=35.99 Aligned_cols=98 Identities=14% Similarity=0.113 Sum_probs=56.4
Q ss_pred CCCEEEEEECCCCCEEEEEC--CCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 89649999799881898802--4898859999889999999998599989999668886558999985446886307999
Q 002778 235 NAGIVVVKDFVTRAIISQFK--AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 312 (882)
Q Consensus 235 ~dG~V~IwDi~s~~~i~~l~--aH~spIsaLaFSPsGtlLATAS~dGt~IrIfdI~p~~~~~~sG~~~~~~s~~~~~l~~ 312 (882)
..|.+.|+|+.++....... .....+....|||||+.||-... ..|.+.+... + .....
T Consensus 89 ~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~--~nl~~~~~~~-------~----------~~~~l 149 (465)
T d1xfda1 89 YTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE--NNIYYCAHVG-------K----------QAIRV 149 (465)
T ss_dssp CCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET--TEEEEESSSS-------S----------CCEEE
T ss_pred CCCCEEEEECCCCCEEECCCCCCCCCCCCEEEECCCCCEEEEEEC--CEEEEEECCC-------C----------CEEEE
T ss_conf 335289998568845641576677643110024267856999961--3299995489-------9----------65897
Q ss_pred EEECCCCC----------------CEEEEEECCCCCEEEEEECC-CEEEEEECCCC
Q ss_conf 97235577----------------28999991299999999289-90999977889
Q 002778 313 LHRGITSA----------------TIQDICFSHYSQWIAIVSSK-GTCHVFVLSPF 351 (882)
Q Consensus 313 L~RG~t~A----------------~I~sIaFSpDs~~LAssS~d-GTVhIwdI~~~ 351 (882)
...|.... .-..+-|||||++||....| ..+..|.+...
T Consensus 150 t~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~ 205 (465)
T d1xfda1 150 VSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTY 205 (465)
T ss_dssp ECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCC
T ss_pred ECCCCCCEEECCCCCHHHHHHHCCCCCEEEECCCCCEEEEEEECCCCCCEEECCCC
T ss_conf 11267660443664310012303664348977989868999953666614641234
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=97.46 E-value=0.00078 Score=36.75 Aligned_cols=111 Identities=10% Similarity=0.032 Sum_probs=61.8
Q ss_pred CEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCC--------------EEEEEECCCC--CCCC------
Q ss_conf 64999979988189880248988599998899999999985999--------------8999966888--6558------
Q 002778 237 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN--------------NINIFRIMPS--CMRS------ 294 (882)
Q Consensus 237 G~V~IwDi~s~~~i~~l~aH~spIsaLaFSPsGtlLATAS~dGt--------------~IrIfdI~p~--~~~~------ 294 (882)
+.+..+|..+..+..++.... .+..++|+|+|++++.++.... .|.+++.... ...+
T Consensus 156 ~~~~~iD~~t~~v~~qI~v~~-~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v 234 (441)
T d1qnia2 156 TMFTAIDAETMDVAWQVIVDG-NLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTI 234 (441)
T ss_dssp EEEEEEETTTCSEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCC
T ss_pred CEEEEECCCCCEEEEEEECCC-CCCCEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCCEEEEECCCCEEEE
T ss_conf 238866375560647873699-8654698799998999851787318985157121789996885110799669999996
Q ss_pred -CCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEE-EECCCEEEEEECCCC
Q ss_conf -999985446886307999972355772899999129999999-928990999977889
Q 002778 295 -GSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI-VSSKGTCHVFVLSPF 351 (882)
Q Consensus 295 -~sG~~~~~~s~~~~~l~~L~RG~t~A~I~sIaFSpDs~~LAs-sS~dGTVhIwdI~~~ 351 (882)
+.+....+.......++.+.-| .....+.+|||++++.+ +..++|+.||++...
T Consensus 235 ~~~~v~vvd~~~~~~v~~~IPvg---ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~ 290 (441)
T d1qnia2 235 GDSKVPVVDGRGESEFTRYIPVP---KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKL 290 (441)
T ss_dssp TTCCCCEEECSSSCSSEEEECCB---SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGH
T ss_pred CCCCCEEEECCCCCCEEEEEECC---CCCCCCEECCCCCEEEEECCCCCCEEEEEEEHH
T ss_conf 99982899803687068997179---886672689998789990775993899983224
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.41 E-value=0.0023 Score=33.99 Aligned_cols=216 Identities=15% Similarity=0.096 Sum_probs=104.6
Q ss_pred CCEEEEEECCCCEEEEEEECCCCEEEEEECC--CEEEEEECC----EEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 9959999889990999997699579999949--799999799----0999979999546999428996567877434222
Q 002778 60 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLAT----QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 133 (882)
Q Consensus 60 pttVrIWDLkTG~~V~tLkf~S~V~sI~~s~--riLAVsld~----qI~IwDa~Tle~l~tL~t~p~p~~~~~~~~g~~~ 133 (882)
+..|.+.|...+.....++....+.+-++++ +.||..... .+++.+..+.... .+......
T Consensus 18 ~~~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------------ 84 (269)
T d2hqsa1 18 PYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRH------------ 84 (269)
T ss_dssp CEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSC------------
T ss_pred EEEEEEECCCCCCCEEEECCCCCEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCEE-EEEEEECC------------
T ss_conf 37999992899976798658984260388789998999981526751344311367506-77642024------------
Q ss_pred CCEEEEECC--CEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 310257747--589990897076267888876578988789868999930788620000343401210012322233789
Q 002778 134 GYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPD 211 (882)
Q Consensus 134 ~~g~lAlgp--RwLAYas~~~~iw~sG~vspq~lt~p~vs~s~Sp~~gsLVa~yA~essk~laagiiktlsky~~~llp~ 211 (882)
.....++| +++++..... + ......+..... .........
T Consensus 85 -~~~~~~spdg~~i~~~~~~~-----~--------------------~~~~~~~~~~~~-----~~~~~~~~~------- 126 (269)
T d2hqsa1 85 -NGAPAFSPDGSKLAFALSKT-----G--------------------SLNLYVMDLASG-----QIRQVTDGR------- 126 (269)
T ss_dssp -EEEEEECTTSSEEEEEECTT-----S--------------------SCEEEEEETTTC-----CEEECCCCS-------
T ss_pred -CCCCEECCCCCEEEEEEECC-----C--------------------CCCEEECCCCCC-----CCEEEEECC-------
T ss_conf -54302448898646764027-----8--------------------641000022212-----200001014-------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC--EEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCC
Q ss_conf 99888557975542212464568896--4999979988189880248988599998899999999985999899996688
Q 002778 212 GSSSPVSPNSVWKVGRHAGADMDNAG--IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP 289 (882)
Q Consensus 212 gs~s~~s~ss~~k~~~~~~~tgs~dG--~V~IwDi~s~~~i~~l~aH~spIsaLaFSPsGtlLATAS~dGt~IrIfdI~p 289 (882)
................. .....| .|.+.++.... ...+..+........++|+|..++..+.++....+|....
T Consensus 127 ~~~~~~~~~~~~~~~~~---~~~~~g~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~ 202 (269)
T d2hqsa1 127 SNNTEPTWFPDSQNLAF---TSDQAGRPQVYKVNINGGA-PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL 202 (269)
T ss_dssp SCEEEEEECTTSSEEEE---EECTTSSCEEEEEETTSSC-CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEET
T ss_pred CCCCCCCCCCCCCCCEE---CCCCCCCCEEEEEECCCCC-CEEEECCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEC
T ss_conf 42114543455443300---0012687438654213310-0010001222234322345430577860588012567603
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCC---EEEEEECC
Q ss_conf 8655899998544688630799997235577289999912999999992899---09999778
Q 002778 290 SCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKG---TCHVFVLS 349 (882)
Q Consensus 290 ~~~~~~sG~~~~~~s~~~~~l~~L~RG~t~A~I~sIaFSpDs~~LAssS~dG---TVhIwdI~ 349 (882)
. .+ .. ++. ..........|||||++|+-.+.++ .++++++.
T Consensus 203 ~-----~~-----------~~-~~~--~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~d 246 (269)
T d2hqsa1 203 A-----TG-----------GV-QVL--SSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD 246 (269)
T ss_dssp T-----TC-----------CE-EEC--CCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred C-----CC-----------CC-EEE--ECCCCCCCEEECCCCCEEEEEECCCCCCEEEEEECC
T ss_conf 5-----64-----------40-585--068654455898999999999817998479999999
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=97.06 E-value=0.0055 Score=31.76 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=9.0
Q ss_pred EEEEEECCCCCEEEEEECCCEE
Q ss_conf 8999991299999999289909
Q 002778 322 IQDICFSHYSQWIAIVSSKGTC 343 (882)
Q Consensus 322 I~sIaFSpDs~~LAssS~dGTV 343 (882)
..+++|.++++++++.+.++.+
T Consensus 115 ~n~i~~~~~g~~~v~~~~~~~i 136 (302)
T d2p4oa1 115 LNGITPLSDTQYLTADSYRGAI 136 (302)
T ss_dssp EEEEEESSSSEEEEEETTTTEE
T ss_pred CCEEEECCCCCEEEECCCCCCC
T ss_conf 2166771579787503565541
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=96.84 E-value=0.0085 Score=30.63 Aligned_cols=118 Identities=14% Similarity=0.107 Sum_probs=65.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC-C--EEEEECC--CCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCC
Q ss_conf 85579755422124645688964999979988-1--8988024--89885999988999999999859998999966888
Q 002778 216 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-A--IISQFKA--HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPS 290 (882)
Q Consensus 216 ~~s~ss~~k~~~~~~~tgs~dG~V~IwDi~s~-~--~i~~l~a--H~spIsaLaFSPsGtlLATAS~dGt~IrIfdI~p~ 290 (882)
.+.++++++.+.++. .....|.+|+.... . ....+.. ...-...++|+|+|+++..+...+..|.+|++...
T Consensus 149 ~v~~sPdG~~l~v~d---~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~ 225 (365)
T d1jofa_ 149 GMVFDPTETYLYSAD---LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA 225 (365)
T ss_dssp EEEECTTSSEEEEEE---TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred EEEECCCCCEEEEEE---CCCCEEEEEECCCCCCEEECCCEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCC
T ss_conf 978889999899820---79987999970688716652511112788740899988998669995158998999995598
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEEEC---------------CCCCCEEEEEECCCCCEEEEEEC------CCEEEEEECC
Q ss_conf 65589999854468863079999723---------------55772899999129999999928------9909999778
Q 002778 291 CMRSGSGNHKYDWNSSHVHLYKLHRG---------------ITSATIQDICFSHYSQWIAIVSS------KGTCHVFVLS 349 (882)
Q Consensus 291 ~~~~~sG~~~~~~s~~~~~l~~L~RG---------------~t~A~I~sIaFSpDs~~LAssS~------dGTVhIwdI~ 349 (882)
. + ..+...... ........|.|+||+++|.++.. .+.+-+|++.
T Consensus 226 ~-----~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~ 290 (365)
T d1jofa_ 226 T-----H----------MPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLR 290 (365)
T ss_dssp T-----C----------CEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEEC
T ss_pred C-----C----------EEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCEEEEEEEEC
T ss_conf 7-----5----------377873124024556556665444435776316998999978997135787542279999856
Q ss_pred CC
Q ss_conf 89
Q 002778 350 PF 351 (882)
Q Consensus 350 ~~ 351 (882)
..
T Consensus 291 ~~ 292 (365)
T d1jofa_ 291 DC 292 (365)
T ss_dssp TT
T ss_pred CC
T ss_conf 88
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.72 E-value=0.011 Score=30.08 Aligned_cols=97 Identities=15% Similarity=0.191 Sum_probs=56.9
Q ss_pred CCCEEEEEECCCCCEEEEEC--CCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 89649999799881898802--4898859999889999999998599989999668886558999985446886307999
Q 002778 235 NAGIVVVKDFVTRAIISQFK--AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 312 (882)
Q Consensus 235 ~dG~V~IwDi~s~~~i~~l~--aH~spIsaLaFSPsGtlLATAS~dGt~IrIfdI~p~~~~~~sG~~~~~~s~~~~~l~~ 312 (882)
..+.|.+||.. ++.+.+|- +.......|+++++|.++++-...+..|.+|+-. | ..+..
T Consensus 176 ~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~--------G----------~~~~~ 236 (279)
T d1q7fa_ 176 RAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD--------G----------QLISA 236 (279)
T ss_dssp GGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT--------S----------CEEEE
T ss_pred CCCCEEEEECC-CCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCC--------C----------CEEEE
T ss_conf 35510023047-94445301132114876232314786999978998089999999--------9----------99999
Q ss_pred EEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC
Q ss_conf 972355772899999129999999928990999977889
Q 002778 313 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 313 L~RG~t~A~I~sIaFSpDs~~LAssS~dGTVhIwdI~~~ 351 (882)
+..+......+.|++.+|++.+ +++.+..|++|+....
T Consensus 237 ~~~~~~~~~p~~vav~~dG~l~-V~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 237 LESKVKHAQCFDVALMDDGSVV-LASKDYRLYIYRYVQL 274 (279)
T ss_dssp EEESSCCSCEEEEEEETTTEEE-EEETTTEEEEEECSCC
T ss_pred EECCCCCCCEEEEEEECCCCEE-EEECCCEEEEEEEEEE
T ss_conf 9688888988379990899199-9918996999872203
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.47 E-value=0.015 Score=29.10 Aligned_cols=83 Identities=12% Similarity=0.098 Sum_probs=34.5
Q ss_pred EEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECC
Q ss_conf 49999799881898802489885999988999999999859998999966888655899998544688630799997235
Q 002778 238 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI 317 (882)
Q Consensus 238 ~V~IwDi~s~~~i~~l~aH~spIsaLaFSPsGtlLATAS~dGt~IrIfdI~p~~~~~~sG~~~~~~s~~~~~l~~L~RG~ 317 (882)
.|.|.|....... .+..+..++..-+|||||+.||-.+.....-.+|..... + .....+ ..
T Consensus 20 ~l~i~d~dG~~~~-~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~------~----------~~~~~~--~~ 80 (269)
T d2hqsa1 20 ELRVSDYDGYNQF-VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLA------N----------GAVRQV--AS 80 (269)
T ss_dssp EEEEEETTSCSCE-EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT------T----------CCEEEE--EC
T ss_pred EEEEECCCCCCCE-EEECCCCCEEEEEECCCCCEEEEEEEECCCCCEEEEECC------C----------CCEEEE--EE
T ss_conf 9999928999767-986589842603887899989999815267513443113------6----------750677--64
Q ss_pred CCCCEEEEEECCCCCEEEEEEC
Q ss_conf 5772899999129999999928
Q 002778 318 TSATIQDICFSHYSQWIAIVSS 339 (882)
Q Consensus 318 t~A~I~sIaFSpDs~~LAssS~ 339 (882)
..+.+....||||+++++..+.
T Consensus 81 ~~~~~~~~~~spdg~~i~~~~~ 102 (269)
T d2hqsa1 81 FPRHNGAPAFSPDGSKLAFALS 102 (269)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC
T ss_pred EECCCCCCEECCCCCEEEEEEE
T ss_conf 2024543024488986467640
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.20 E-value=0.0067 Score=31.26 Aligned_cols=50 Identities=8% Similarity=0.064 Sum_probs=22.5
Q ss_pred CEEEEEECCCCEEEEEEE---CC-CCEEEEEECC--CEEEEEEC----------CEEEEEECCCCC
Q ss_conf 959999889990999997---69-9579999949--79999979----------909999799995
Q 002778 61 TAVRFYSFQSHCYEHVLR---FR-SSVCMVRCSP--RIVAVGLA----------TQIYCFDALTLE 110 (882)
Q Consensus 61 ttVrIWDLkTG~~V~tLk---f~-S~V~sI~~s~--riLAVsld----------~qI~IwDa~Tle 110 (882)
..+.+||.++++....+. +. -.+.+..+++ +.|++..+ ..+++||+.+.+
T Consensus 37 g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~ 102 (465)
T d1xfda1 37 GTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGD 102 (465)
T ss_dssp SCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCC
T ss_pred CCEEEEECCCCCEEEEECCCCCCCCCCCEEEECCCCCEEEEEECCCCEEEEECCCCEEEEECCCCC
T ss_conf 969999878998899872764444553213898988869999845100476033528999856884
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=95.22 E-value=0.054 Score=25.87 Aligned_cols=18 Identities=28% Similarity=0.600 Sum_probs=8.1
Q ss_pred EEEECCCCCEEEEEECCC
Q ss_conf 999889999999998599
Q 002778 262 ALCFDPSGTLLVTASVYG 279 (882)
Q Consensus 262 aLaFSPsGtlLATAS~dG 279 (882)
.|+|+++|++.++....+
T Consensus 212 gia~d~dG~l~va~~~~~ 229 (302)
T d2p4oa1 212 DFAFDVEGNLYGATHIYN 229 (302)
T ss_dssp SEEEBTTCCEEEECBTTC
T ss_pred CEEECCCCCEEEEECCCC
T ss_conf 237879999999974899
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=94.28 E-value=0.094 Score=24.44 Aligned_cols=51 Identities=14% Similarity=0.199 Sum_probs=24.2
Q ss_pred CEEEEEECCCCEEEEEEECCCCEEEEEECC--CEEEEEE--C-----CEEEEEECCCCCE
Q ss_conf 959999889990999997699579999949--7999997--9-----9099997999954
Q 002778 61 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL--A-----TQIYCFDALTLEN 111 (882)
Q Consensus 61 ttVrIWDLkTG~~V~tLkf~S~V~sI~~s~--riLAVsl--d-----~qI~IwDa~Tle~ 111 (882)
..|.++|+.+++.......+..+...++++ +.||-.. . .+|+++++.+.+.
T Consensus 21 ~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~ 80 (281)
T d1k32a2 21 DDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI 80 (281)
T ss_dssp TEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE
T ss_pred CCEEEEECCCCCEEEEECCCCCCCCEEECCCCCEEEEEEEECCCCCCEEEEEEEECCCCE
T ss_conf 968999899998799766998526779878999899998628987722899998259952
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.95 E-value=0.28 Score=21.68 Aligned_cols=27 Identities=7% Similarity=0.111 Sum_probs=16.3
Q ss_pred CCEEEEEECCEEEEEECCCCCEEEEEE
Q ss_conf 979999979909999799995469994
Q 002778 90 PRIVAVGLATQIYCFDALTLENKFSVL 116 (882)
Q Consensus 90 ~riLAVsld~qI~IwDa~Tle~l~tL~ 116 (882)
+.++|+-....+++||+.+.++++...
T Consensus 74 ~~IiALrag~~LQiFnletK~klks~~ 100 (327)
T d1utca2 74 SKVIALKAGKTLQIFNIEMKSKMKAHT 100 (327)
T ss_dssp SSEEEEEETTEEEEEETTTTEEEEEEE
T ss_pred CCEEEEECCCEEEEEEHHHHHHHCEEE
T ss_conf 757999628868998446822111587
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=88.79 E-value=0.41 Score=20.65 Aligned_cols=52 Identities=8% Similarity=-0.111 Sum_probs=39.1
Q ss_pred CCEEEEEECCCCEEEEEEECCCCEEEEEECC-CEEEEEECCEEEEEECCCCCEE
Q ss_conf 9959999889990999997699579999949-7999997990999979999546
Q 002778 60 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP-RIVAVGLATQIYCFDALTLENK 112 (882)
Q Consensus 60 pttVrIWDLkTG~~V~tLkf~S~V~sI~~s~-riLAVsld~qI~IwDa~Tle~l 112 (882)
..+|..||.++++. ..+.++..+.++.+.. ..+.++....|+.||..+.+..
T Consensus 39 ~~~I~r~d~~~g~~-~~~~~~~~~~~i~~~~dg~l~va~~~gl~~~d~~tg~~~ 91 (295)
T d2ghsa1 39 ERELHELHLASGRK-TVHALPFMGSALAKISDSKQLIASDDGLFLRDTATGVLT 91 (295)
T ss_dssp GTEEEEEETTTTEE-EEEECSSCEEEEEEEETTEEEEEETTEEEEEETTTCCEE
T ss_pred CCEEEEEECCCCEE-EEEECCCCCEEEEEECCCCEEEEEECCCEEEECCCCEEE
T ss_conf 99999998998959-999899981798996599889997376389504645135
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=87.94 E-value=0.47 Score=20.32 Aligned_cols=98 Identities=16% Similarity=0.155 Sum_probs=53.6
Q ss_pred CCCEEEEEECCCCCEE------EEECC-CCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8964999979988189------88024-8988599998899999999985999899996688865589999854468863
Q 002778 235 NAGIVVVKDFVTRAII------SQFKA-HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH 307 (882)
Q Consensus 235 ~dG~V~IwDi~s~~~i------~~l~a-H~spIsaLaFSPsGtlLATAS~dGt~IrIfdI~p~~~~~~sG~~~~~~s~~~ 307 (882)
..+.|..||+.....+ ..+.. +....-.|+++.+|++.++....+ .|.+|+-.. +
T Consensus 196 ~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g-~I~~~dp~~-------g---------- 257 (314)
T d1pjxa_ 196 PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS-HIEVFGPDG-------G---------- 257 (314)
T ss_dssp TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT-EEEEECTTC-------B----------
T ss_pred CCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCEEEEECCCC-EEEEEECCC-------C----------
T ss_conf 2431177611676543015689971335666410257834785799982799-999996999-------9----------
Q ss_pred CEEEEEEECCCCCCEEEEEECCCCCEEE-EEECCCEEEEEECCCCC
Q ss_conf 0799997235577289999912999999-99289909999778899
Q 002778 308 VHLYKLHRGITSATIQDICFSHYSQWIA-IVSSKGTCHVFVLSPFG 352 (882)
Q Consensus 308 ~~l~~L~RG~t~A~I~sIaFSpDs~~LA-ssS~dGTVhIwdI~~~g 352 (882)
..+..+. .......+++|.+|++.|. +.+..|++..+++...|
T Consensus 258 ~~~~~i~--~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G 301 (314)
T d1pjxa_ 258 QPKMRIR--CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG 301 (314)
T ss_dssp SCSEEEE--CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred EEEEEEE--CCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCC
T ss_conf 7999997--9999878999928989999998789919999789999
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.14 E-value=0.67 Score=19.43 Aligned_cols=42 Identities=17% Similarity=0.098 Sum_probs=18.9
Q ss_pred CCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEC
Q ss_conf 964999979988189880248988599998899999999985
Q 002778 236 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV 277 (882)
Q Consensus 236 dG~V~IwDi~s~~~i~~l~aH~spIsaLaFSPsGtlLATAS~ 277 (882)
.+.|..+|.............-.....|+|+++|.++++-..
T Consensus 160 ~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~ 201 (260)
T d1rwia_ 160 NNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN 201 (260)
T ss_dssp GTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETT
T ss_pred CCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEEEEEECC
T ss_conf 643322234310012221011478763123100013432148
|