Citrus Sinensis ID: 002802

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------88
MDSFEPDGNGARDGNGAPDSLPPPPPVIPPDFVPTRVEEQEPAKKKVVRVPISRRGLGSRGQRISLLTNHFKVNVTNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETYNAELDGKDFAYDGEKSLFTVGPLPRNKLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRKRLRRPYRSKTFKVEISFAAKIPIQAIANALRGQESENSQEAFRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQERMSVLSNALKLSKYDNEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSARCDIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMRVNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSDIPSIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQSGSPDNVPPGTVVDNKVCHPRNYDFYLCAHAGMIGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVGNLKNLMLVVLASYFYR
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEEccccEEEEEEEEEEccccccccccHHHHHHHHHHHHHHHHccccccEEEcccccEEcccccccccEEEEEEEcccccccccccccccccccccccccccccccccccEEEEEEEEEEEEcHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEccEEEEEcccccEEEEEEcccEEEccccHHHHHHHHHccccccccHHHHHHHHHccccEEEEEEcccccEEcccccccccccccccccccccccccccccEEEEHHHHHHHHccccccccccccEEEccccccccccccccEEEccccHHHccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccHHHHccccEEcccEEEEEEEEcccccccccccccccccccEEEcccccccccccccEEEEEEEccccHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHccccccEEEEEEccccccccHHHHHHHHHccccccEEEEccccccHHHHHHHHHHHHccccccEEcccccccccccccccccEEEEEEEEcccccccccccEEEEEEEccccccccEEEEEEEEccccEEEccccccccccccHHHHHHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEcccccccccccccccccccEEEccccccccccEEEEEccccccccccccEEEEEEccccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHcc
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEcccccEEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHccccccccccccEEcccccccccEEEEEEEccccccccccccccccccccccccccccccccccEEEEEEEEEEEEccHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccEEcccccccccccccccccccEEEEccccccccccccccEEEEEccHHHEccccHHHHHHHHHHccccccHHHHHHHHHHHcccEEEEEccccEEEEEccccccccccEccccccccccccccccEEEEEHHHHHHHHccEEEEccccccccccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHcccEEccccEEEEEEEcccccEEEccccEEcccccEEEccccEEEccEEEEEEEEEEccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHcccccEEEEEEEcccccccEEEEEEEccccEEEEEEEEEccccccHHHHHHEEEEEEEEEcccccEEcccccccccccccccEEEEEcccccccccccccccEEEEEEccccccccHEEEEEEcccHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccEEcccccccccccccEEcccccccccccEEEEcccccccccccccEEEEEccccccHHHHHHHHHHHcHHEEHccccccccHHHHHHHHHHHHHHcc
mdsfepdgngardgngapdslpppppvippdfvptrveeqepakkkvvrvpisrrglgsrgqrISLLTNHFKVNVTNVEGHFYHYSVSvsyedgrpvdgkgagrKVIDRVQETYnaeldgkdfaydgekslftvgplprnklEFTVVLEDIssnrnngnaspdahgspngndrkrlrrpyrsktFKVEISFAAKIPIQAIANALrgqesensqEAFRVLDIILRQHAAKQGCLLVRqsffhndpknfadvgggvlgcrgfhssfrttqgglslnidvsttmiiqpgpvVDFLIAnqnvrdpfsiDWAKAKRTLKNLRIKTITSNQEYKITGLSEKLCKEQMFSLKqknvkdddgevqELEITVYDYFVnnrnidlrysgdlpcinvgkpkrptyiplelcELVSLQRYTKALTNLQRASLveksrqkpQERMSVLSNAlklskydnepmlrscgisistnfaqvegrvlpaprlkfgngedfsprngrwnfnnkklvqptkIERWAVVNFSARCDIRSLVRDLIKcgemkgilidqpfdvfeespqfrrsspvvRVEKMFDEIqsklpgapqfllcllperknsdlygpwkrknladfgivtqcmapmrvnDQYLTNVLLKINAKLgglnsllavehspsipivskvptiilgmdvshgspghsdipsIAAVVSSRHWPLISRYRAavrtqspkveMIDSLFKKVSDTEDEGIIRELLLDFYtssgkrkpeqiIIFRDGVSESQFNQVLNVELNQIIEACKfldekwspKFAVIVAQKnhhtkffqsgspdnvppgtvvdnkvchprnydfYLCAhagmigtsrpthyHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVGNLKNLMLVVLASYFYR
MDSFEPDGNGARdgngapdslppppPVIPPDFVPTRveeqepakkkvvrvpisrrglgsrgqrislltNHFKVNVTNVEGHFYHYSVSvsyedgrpvdgkgagrkvIDRVQETYnaeldgkdfayDGEKSLFtvgplprnKLEFTVVLEDISsnrnngnaspdahgspngndrkrlrrPYRSKTFKVEISFAAKIPIQAIANAlrgqesenSQEAFRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPFSIDWAKAKrtlknlriktitsnqeykitglSEKLCKEQMFSLKqknvkdddgeVQELEITVYDYFVNNRNIDlrysgdlpcinvgkPKRPTYIPLELCELVSLQRYTKALTNlqraslveksrqkpqermSVLSnalklskydnePMLRSCGISISTNFAQVEGRVlpaprlkfgngedfsprngrwnfnnkklvqptkieRWAVVNFSARCDIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMRVNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSDIPSIAAVVSSRHWPLISRYRaavrtqspkvemidslfkkvsdtedeGIIRELLLdfytssgkrkPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKffqsgspdnvppGTVVDNKVCHPRNYDFYLCAHAGMIGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTtaisvgnlknLMLVVLASYFYR
MDSFEPDGNGARDGNGApdslpppppvippdfvpTRVEEQEPAKKKVVRVPISRRGLGSRGQRISLLTNHFKVNVTNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETYNAELDGKDFAYDGEKSLFTVGPLPRNKLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRKRLRRPYRSKTFKVEISFAAKIPIQAIANALRGQESENSQEAFRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQERMSVLSNALKLSKYDNEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSARCDIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMRVNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSDIPSIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQSGSPDNVPPGTVVDNKVCHPRNYDFYLCAHAGMIGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVGNLKNLMLVVLASYFYR
***********************************************************RGQRISLLTNHFKVNVTNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETYNAELDGKDFAYDGEKSLFTVGPLPRNKLEFTVVLE**********************************TFKVEISFAAKIPIQAIANAL*********EAFRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEYKITGLSEKLCKEQMFSLK********GEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQ********************************MLRSCGISISTNFAQVEGRVLPAPRLKFGNGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSARCDIRSLVRDLIKCGEMKGILIDQPFDVFEE*********VVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMRVNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHG***HSDIPSIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQ********PGTVVDNKVCHPRNYDFYLCAHAGMIGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVGNLKNLMLVVLASYFY*
**********************************************************SRGQRISLLTNHFKVNVTNVEGHFYHYSVSVSYED******KGAGRKVIDRVQETYNAELDGKDFAYDGEKSLFTVGPLPRNKLEFTVVLEDISSNRNNGNA***A**SPN**DR*RLRRPYRSKTFKVEISFAAKIPIQAIANALRGQESENSQEAFRVLDIILRQHAAKQGCLLVRQSFFHN******DVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEYKITGLSEKLCKEQ**************EVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQERMSVLSNALKLSKYDNEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSARCDIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMRVNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSP*****PSIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQSGSPDNVPPGTVVDNKVCHPRNYDFYLCAHAGMIGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVGNLKNLMLVVLASYFYR
***********RDGNGAPDSLPPPPPVIPPDFVPTRVEEQEPAKKKVVRVPISRRGLGSRGQRISLLTNHFKVNVTNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETYNAELDGKDFAYDGEKSLFTVGPLPRNKLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRKRLRRPYRSKTFKVEISFAAKIPIQAIANAL********QEAFRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASL************SVLSNALKLSKYDNEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSARCDIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMRVNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSDIPSIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQSGSPDNVPPGTVVDNKVCHPRNYDFYLCAHAGMIGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVGNLKNLMLVVLASYFYR
************************************************RVPISRR**GSRGQRISLLTNHFKVNVTNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETYNAELDGKDFAYDGEKSLFTVGPLPRNKLEFTVVLED******************************RSKTFKVEISFAAKIPIQAIANALRGQESENSQEAFRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEYKITGLSEKLCKEQMFSLKQKNVKDD*GEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQERMSVLSNALKLSKYDNEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSARCDIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMRVNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGS*GHSDIPSIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQSGSPDNVPPGTVVDNKVCHPRNYDFYLCAHAGMIGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVGNLKNLMLVVLASYFYR
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDSFEPDGNGARDGNGAPDSLPPPPPVIPPDFVPTRVEEQEPAKKKVVRVPISRRGLGSRGQRISLLTNHFKVNVTNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETYNAELDGKDFAYDGEKSLFTVGPLPRNKLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRKRLRRPYRSKTFKVEISFAAKIPIQAIANALRGQESENSQEAFRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQERMSVLSNALKLSKYDNEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSARCDIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMRVNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSDIPSIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQSGSPDNVPPGTVVDNKVCHPRNYDFYLCAHAGMIGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVGNLKNLMLVVLASYFYR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query879 2.2.26 [Sep-21-2011]
Q9ZVD5924 Protein argonaute 4 OS=Ar yes no 0.976 0.928 0.727 0.0
Q0JF58911 Protein argonaute 4B OS=O yes no 0.944 0.911 0.728 0.0
Q9SDG8904 Protein argonaute 4A OS=O no no 0.921 0.896 0.735 0.0
Q84VQ0896 Protein argonaute 9 OS=Ar no no 0.949 0.931 0.685 0.0
Q6YSJ5883 Protein argonaute 16 OS=O no no 0.919 0.915 0.636 0.0
Q3E984850 Protein argonaute 8 OS=Ar no no 0.887 0.917 0.615 0.0
Q5NBN9889 Protein argonaute 15 OS=O no no 0.922 0.912 0.595 0.0
O48771878 Protein argonaute 6 OS=Ar no no 0.911 0.912 0.572 0.0
Q6EU141082 Protein argonaute 1A OS=O no no 0.889 0.722 0.372 1e-145
Q7XSA21118 Protein argonaute 1B OS=O no no 0.883 0.694 0.367 1e-142
>sp|Q9ZVD5|AGO4_ARATH Protein argonaute 4 OS=Arabidopsis thaliana GN=AGO4 PE=1 SV=2 Back     alignment and function desciption
 Score = 1318 bits (3410), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 633/870 (72%), Positives = 752/870 (86%), Gaps = 12/870 (1%)

Query: 1   MDSFEPDGNGA-------RDGNGAPDSLPPPPPVIPPDFVPTRVEEQEPAKKKVVRVPIS 53
           MDS   +GNGA        +G+G  ++LPPPPPVIPP+  P RV+ +   KK  VRVP++
Sbjct: 1   MDS--TNGNGADLESANGANGSGVTEALPPPPPVIPPNVEPVRVKTELAEKKGPVRVPMA 58

Query: 54  RRGLGSRGQRISLLTNHFKVNVTNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQET 113
           R+G G+RGQ+I LLTNHFKV+V N++GHF+HYSV++ Y+DGRPV+ KG GRK++D+V +T
Sbjct: 59  RKGFGTRGQKIPLLTNHFKVDVANLQGHFFHYSVALFYDDGRPVEQKGVGRKILDKVHQT 118

Query: 114 YNAELDGKDFAYDGEKSLFTVGPLPRNKLEFTVVLEDISSNRNNGNASPDAHGSPNGNDR 173
           Y+++LDGK+FAYDGEK+LFT G LP NK++F+VVLE++S+ R NGN SP+ + SP+  DR
Sbjct: 119 YHSDLDGKEFAYDGEKTLFTYGALPSNKMDFSVVLEEVSATRANGNGSPNGNESPSDGDR 178

Query: 174 KRLRRPYRSKTFKVEISFAAKIPIQAIANALRGQESENSQEAFRVLDIILRQHAAKQGCL 233
           KRLRRP RSK F+VEIS+AAKIP+QA+ANA+RGQESENSQEA RVLDIILRQHAA+QGCL
Sbjct: 179 KRLRRPNRSKNFRVEISYAAKIPLQALANAMRGQESENSQEAIRVLDIILRQHAARQGCL 238

Query: 234 LVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLI 293
           LVRQSFFHNDP N   VGG +LGCRGFHSSFRTTQGG+SLN+DV+TTMII+PGPVVDFLI
Sbjct: 239 LVRQSFFHNDPTNCEPVGGNILGCRGFHSSFRTTQGGMSLNMDVTTTMIIKPGPVVDFLI 298

Query: 294 ANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEYKITGLSEKLCKEQMFSLKQKNVKDDD 353
           ANQN RDP+SIDW+KAKRTLKNLR+K   S QE+KITGLS+K C+EQ F LK++N  +++
Sbjct: 299 ANQNARDPYSIDWSKAKRTLKNLRVKVSPSGQEFKITGLSDKPCREQTFELKKRN-PNEN 357

Query: 354 GEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALT 413
           GE +  E+TV DYF + R+IDL+YS DLPCINVGKPKRPTYIPLELC LV LQRYTKALT
Sbjct: 358 GEFETTEVTVADYFRDTRHIDLQYSADLPCINVGKPKRPTYIPLELCALVPLQRYTKALT 417

Query: 414 NLQRASLVEKSRQKPQERMSVLSNALKLSKYDNEPMLRSCGISISTNFAQVEGRVLPAPR 473
             QR++LVEKSRQKPQERM+VLS ALK+S YD EP+LRSCGISIS+NF QVEGRVLPAP+
Sbjct: 418 TFQRSALVEKSRQKPQERMTVLSKALKVSNYDAEPLLRSCGISISSNFTQVEGRVLPAPK 477

Query: 474 LKFGNGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSARCDIRSLVRDLIKCGEMKGIL 533
           LK G G +  PRNGRWNFNNK+ V+PTKI+RW VVNFSARC++R +V DLIK G  KGI 
Sbjct: 478 LKMGCGSETFPRNGRWNFNNKEFVEPTKIQRWVVVNFSARCNVRQVVDDLIKIGGSKGIE 537

Query: 534 IDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRK 593
           I  PF VFEE  QFRR+ P++RVE MF +IQSKLPG PQF+LC+LP++KNSDLYGPWK+K
Sbjct: 538 IASPFQVFEEGNQFRRAPPMIRVENMFKDIQSKLPGVPQFILCVLPDKKNSDLYGPWKKK 597

Query: 594 NLADFGIVTQCMAPMRV-NDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIIL 652
           NL +FGIVTQCMAP R  NDQYLTN+LLKINAKLGGLNS+L+VE +P+  ++SKVPTIIL
Sbjct: 598 NLTEFGIVTQCMAPTRQPNDQYLTNLLLKINAKLGGLNSMLSVERTPAFTVISKVPTIIL 657

Query: 653 GMDVSHGSPGHSDIPSIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEG 712
           GMDVSHGSPG SD+PSIAAVVSSR WPLIS+YRA+VRTQ  K EMI+SL KK + TED+G
Sbjct: 658 GMDVSHGSPGQSDVPSIAAVVSSREWPLISKYRASVRTQPSKAEMIESLVKK-NGTEDDG 716

Query: 713 IIRELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFA 772
           II+ELL+DFYTSS KRKPE IIIFRDGVSESQFNQVLN+EL+QIIEACK LD  W+PKF 
Sbjct: 717 IIKELLVDFYTSSNKRKPEHIIIFRDGVSESQFNQVLNIELDQIIEACKLLDANWNPKFL 776

Query: 773 VIVAQKNHHTKFFQSGSPDNVPPGTVVDNKVCHPRNYDFYLCAHAGMIGTSRPTHYHVLF 832
           ++VAQKNHHTKFFQ  SP+NVPPGT++DNK+CHP+N DFYLCAHAGMIGT+RPTHYHVL+
Sbjct: 777 LLVAQKNHHTKFFQPTSPENVPPGTIIDNKICHPKNNDFYLCAHAGMIGTTRPTHYHVLY 836

Query: 833 DEIGFSSDELQELVHSLSYVYQRSTTAISV 862
           DEIGFS+DELQELVHSLSYVYQRST+AISV
Sbjct: 837 DEIGFSADELQELVHSLSYVYQRSTSAISV 866
Involved in transcriptional gene silencing (TGS). Component of the RISC complex that associate with the small interfering RNA (siRNA) pathway involved in direct cytosine methylation at endogenous DNA repeats. Forms a AGO4/NRPE1/siRNA complex in cajal body, facilitating its function in RNA-directed gene silencing of target loci. Required for CpNpG and asymmetric DNA methylation as well as histone H3 'Lys-9' methylation (H3K9me) at SUP and SN1 loci. May be not required for CpG methylation. Required for the production and maintenance of retrotransposon SN1 and Copia and ribosomal 5S 25 nucleotide siRNAs specialized in gene silencing at chromatin level. Involved in de novo methylation of FWA gene and required for the maintenance of RNA-directed DNA methylation (RdDM) triggered by inverted repeat transgenes. Interacts with miRNA miR390 and miR172, targeting respectively TAS3 and AP2 mRNAs, and mediates cleavage of miRNA targets. Associates mainly with small RNAs of 24 nucleotide in length and preferentially recruits small RNAs with a 5' terminal adenosine. Targeted by the turnip yellows virus (TuYV) protein P0 (via F-box-like domain) for probable proteasome degradation and thereby inactivating AGO4 function in RNA silencing. Required for resistance to the bacterial pathogen P.syringae. Works independently of the RdDM pathway in mediating resistance to P.syringae. RdDM is involved in viral genome methylation as an epigenetic defense against geminiviruses.
Arabidopsis thaliana (taxid: 3702)
>sp|Q0JF58|AGO4B_ORYSJ Protein argonaute 4B OS=Oryza sativa subsp. japonica GN=AGO4B PE=2 SV=1 Back     alignment and function description
>sp|Q9SDG8|AGO4A_ORYSJ Protein argonaute 4A OS=Oryza sativa subsp. japonica GN=AGO4A PE=2 SV=1 Back     alignment and function description
>sp|Q84VQ0|AGO9_ARATH Protein argonaute 9 OS=Arabidopsis thaliana GN=AGO9 PE=1 SV=2 Back     alignment and function description
>sp|Q6YSJ5|AGO16_ORYSJ Protein argonaute 16 OS=Oryza sativa subsp. japonica GN=AGO16 PE=2 SV=2 Back     alignment and function description
>sp|Q3E984|AGO8_ARATH Protein argonaute 8 OS=Arabidopsis thaliana GN=AGO8 PE=3 SV=1 Back     alignment and function description
>sp|Q5NBN9|AGO15_ORYSJ Protein argonaute 15 OS=Oryza sativa subsp. japonica GN=AGO15 PE=2 SV=2 Back     alignment and function description
>sp|O48771|AGO6_ARATH Protein argonaute 6 OS=Arabidopsis thaliana GN=AGO6 PE=2 SV=2 Back     alignment and function description
>sp|Q6EU14|AGO1A_ORYSJ Protein argonaute 1A OS=Oryza sativa subsp. japonica GN=AGO1A PE=2 SV=1 Back     alignment and function description
>sp|Q7XSA2|AGO1B_ORYSJ Protein argonaute 1B OS=Oryza sativa subsp. japonica GN=AGO1B PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query879
255573685921 eukaryotic translation initiation factor 0.974 0.930 0.849 0.0
225436053913 PREDICTED: protein argonaute 4 [Vitis vi 0.972 0.936 0.836 0.0
449463869915 PREDICTED: protein argonaute 4-like [Cuc 0.972 0.934 0.829 0.0
449516890915 PREDICTED: LOW QUALITY PROTEIN: protein 0.974 0.936 0.829 0.0
268376309933 argonaute 4-like protein [Pelargonium x 0.971 0.915 0.839 0.0
409127957909 AGO4A [Solanum lycopersicum] 0.943 0.911 0.813 0.0
84688912905 AGO4-2, partial [Nicotiana benthamiana] 0.957 0.930 0.811 0.0
356554251906 PREDICTED: protein argonaute 4-like [Gly 0.930 0.902 0.827 0.0
409127959913 AGO4B [Solanum lycopersicum] 0.943 0.907 0.813 0.0
84688910912 AGO4-1, partial [Nicotiana benthamiana] 0.944 0.910 0.809 0.0
>gi|255573685|ref|XP_002527764.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis] gi|223532851|gb|EEF34625.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1504 bits (3893), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 737/868 (84%), Positives = 792/868 (91%), Gaps = 11/868 (1%)

Query: 1   MDSFEPDGNGARDGNG------APDSLPPPPPVIPPDFVPTRVEEQEPAKKKVVRVPISR 54
           MDSFEPDGNG R+GNG      + + LPPPPPV+PPD VP R E  EP KKKVVRVPI+R
Sbjct: 1   MDSFEPDGNGLREGNGIHEGNGSQEGLPPPPPVVPPDVVPMRAEP-EPVKKKVVRVPIAR 59

Query: 55  RGLGSRGQRISLLTNHFKVNVTNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETY 114
           RGLGS+GQ+ISLLTNHFKVNV  V+ +F+HY VS+SYEDGRPVDGKG GRKVIDRV ETY
Sbjct: 60  RGLGSKGQKISLLTNHFKVNVNKVDDYFFHYCVSLSYEDGRPVDGKGVGRKVIDRVHETY 119

Query: 115 NAELDGKDFAYDGEKSLFTVGPLPRNKLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRK 174
           ++E+ GK FAYDGEKSLFTVG LPRNKLEFTVVLED++SNRNNGNASPD HGSPN  DRK
Sbjct: 120 DSEMGGKKFAYDGEKSLFTVGALPRNKLEFTVVLEDVTSNRNNGNASPDGHGSPNEGDRK 179

Query: 175 RLRRPYRSKTFKVEISFAAKIPIQAIANALRGQESENSQEAFRVLDIILRQHAAKQGCLL 234
           R+RRPY+SKTFKVEISFAAKIP+QAIANALRGQESENSQEA RVLDIILRQHAAKQGCLL
Sbjct: 180 RMRRPYQSKTFKVEISFAAKIPMQAIANALRGQESENSQEAIRVLDIILRQHAAKQGCLL 239

Query: 235 VRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIA 294
           VRQ+FFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIA
Sbjct: 240 VRQNFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIA 299

Query: 295 NQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEYKITGLSEKLCKEQMFSLKQKNVKDDDG 354
           NQNVRDPF +DWAKAKRTLKNLRIK   SNQEYKITGLSE  CKEQ F L QK   D+D 
Sbjct: 300 NQNVRDPFQLDWAKAKRTLKNLRIKASPSNQEYKITGLSEMPCKEQTFQLNQKGRDDND- 358

Query: 355 EVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTN 414
               LE+TVYDYFVN+R I+LRYSGDLPCINVGKPKRPT+IP+ELC LVSLQRYTKAL  
Sbjct: 359 ---PLELTVYDYFVNHRRIELRYSGDLPCINVGKPKRPTFIPIELCSLVSLQRYTKALNT 415

Query: 415 LQRASLVEKSRQKPQERMSVLSNALKLSKYDNEPMLRSCGISISTNFAQVEGRVLPAPRL 474
           LQRASLVEKSRQKPQERMS LSNALK S YD EPMLRSCG+SIST+F QV+GR L AP+L
Sbjct: 416 LQRASLVEKSRQKPQERMSTLSNALKSSNYDAEPMLRSCGVSISTSFVQVDGRQLQAPKL 475

Query: 475 KFGNGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSARCDIRSLVRDLIKCGEMKGILI 534
           K GNGEDF PRNGRWNFNNKKLV P+KIERWAVVNFSARCDIR+LVRDL KC EMKGI I
Sbjct: 476 KVGNGEDFFPRNGRWNFNNKKLVDPSKIERWAVVNFSARCDIRNLVRDLTKCAEMKGIPI 535

Query: 535 DQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKN 594
           + PFDVFEE+PQFRR+ P VRVEKMFD IQSKLPGAP+FLLCLLPERKNSDLYGPWK+KN
Sbjct: 536 EPPFDVFEENPQFRRAPPTVRVEKMFDSIQSKLPGAPKFLLCLLPERKNSDLYGPWKKKN 595

Query: 595 LADFGIVTQCMAPMRVNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGM 654
           L+DFGIVTQC+AP RVNDQYLTNVLLKINAKLGGLNS+LAVEHSPSIP+VSKVPTII+GM
Sbjct: 596 LSDFGIVTQCIAPQRVNDQYLTNVLLKINAKLGGLNSMLAVEHSPSIPLVSKVPTIIIGM 655

Query: 655 DVSHGSPGHSDIPSIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGII 714
           DVSHGSPGHSD+PSIAAVVSSR WPLISRYRA VRTQSPKVEMIDSL+K VSDTEDEG++
Sbjct: 656 DVSHGSPGHSDVPSIAAVVSSRQWPLISRYRACVRTQSPKVEMIDSLYKPVSDTEDEGMM 715

Query: 715 RELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVI 774
           RELLLDFY+SSGKRKPEQIIIFRDGVSESQFNQVLN+ELNQIIEACK LDEKW+PKF VI
Sbjct: 716 RELLLDFYSSSGKRKPEQIIIFRDGVSESQFNQVLNIELNQIIEACKHLDEKWNPKFVVI 775

Query: 775 VAQKNHHTKFFQSGSPDNVPPGTVVDNKVCHPRNYDFYLCAHAGMIGTSRPTHYHVLFDE 834
           +AQKNHHTKFFQ G PDNVPPGTV+DNKVCHPRN DFYLCAHAGMIGT+RPTHYHVL DE
Sbjct: 776 IAQKNHHTKFFQPGLPDNVPPGTVIDNKVCHPRNNDFYLCAHAGMIGTTRPTHYHVLLDE 835

Query: 835 IGFSSDELQELVHSLSYVYQRSTTAISV 862
           +GFS+DELQELVHSLSYVYQRSTTAISV
Sbjct: 836 VGFSADELQELVHSLSYVYQRSTTAISV 863

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225436053|ref|XP_002275928.1| PREDICTED: protein argonaute 4 [Vitis vinifera] gi|296083994|emb|CBI24382.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449463869|ref|XP_004149653.1| PREDICTED: protein argonaute 4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449516890|ref|XP_004165479.1| PREDICTED: LOW QUALITY PROTEIN: protein argonaute 4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|268376309|gb|ACZ04920.1| argonaute 4-like protein [Pelargonium x hortorum] Back     alignment and taxonomy information
>gi|409127957|gb|AFV15381.1| AGO4A [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|84688912|gb|ABC61505.1| AGO4-2, partial [Nicotiana benthamiana] Back     alignment and taxonomy information
>gi|356554251|ref|XP_003545462.1| PREDICTED: protein argonaute 4-like [Glycine max] Back     alignment and taxonomy information
>gi|409127959|gb|AFV15382.1| AGO4B [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|84688910|gb|ABC61504.1| AGO4-1, partial [Nicotiana benthamiana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query879
TAIR|locus:2059258924 AGO4 "ARGONAUTE 4" [Arabidopsi 0.938 0.892 0.740 0.0
TAIR|locus:2179008896 AGO9 "ARGONAUTE 9" [Arabidopsi 0.924 0.907 0.697 0.0
TAIR|locus:2147072850 AT5G21030 [Arabidopsis thalian 0.784 0.811 0.617 8e-269
TAIR|locus:2059370878 AGO6 "ARGONAUTE 6" [Arabidopsi 0.927 0.928 0.573 2.2e-256
TAIR|locus:2057851997 AGO5 "ARGONAUTE 5" [Arabidopsi 0.821 0.724 0.380 2.1e-141
FB|FBgn0262739984 AGO1 "Argonaute-1" [Drosophila 0.770 0.688 0.355 2.7e-109
UNIPROTKB|F1LUQ5860 Eif2c4 "Protein Eif2c4" [Rattu 0.769 0.786 0.346 3.4e-109
UNIPROTKB|Q4KLV6884 eif2c4 "Protein argonaute-4" [ 0.769 0.764 0.349 1.5e-108
UNIPROTKB|F1P3Z1847 EIF2C4 "Protein argonaute-4" [ 0.769 0.798 0.344 1.9e-108
UNIPROTKB|Q9HCK5861 EIF2C4 "Protein argonaute-4" [ 0.769 0.785 0.342 1.9e-108
TAIR|locus:2059258 AGO4 "ARGONAUTE 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3313 (1171.3 bits), Expect = 0., P = 0.
 Identities = 613/828 (74%), Positives = 726/828 (87%)

Query:    36 RVEEQEPAKKKVVRVPISRRGLGSRGQRISLLTNHFKVNVTNVEGHFYHYSVSVSYEDGR 95
             RV+ +   KK  VRVP++R+G G+RGQ+I LLTNHFKV+V N++GHF+HYSV++ Y+DGR
Sbjct:    41 RVKTELAEKKGPVRVPMARKGFGTRGQKIPLLTNHFKVDVANLQGHFFHYSVALFYDDGR 100

Query:    96 PVDGKGAGRKVIDRVQETYNAELDGKDFAYDGEKSLFTVGPLPRNKLEFTVVLEDISSNR 155
             PV+ KG GRK++D+V +TY+++LDGK+FAYDGEK+LFT G LP NK++F+VVLE++S+ R
Sbjct:   101 PVEQKGVGRKILDKVHQTYHSDLDGKEFAYDGEKTLFTYGALPSNKMDFSVVLEEVSATR 160

Query:   156 NNGNASPDAHGSPNGNDRKRLRRPYRSKTFKVEISFAAKIPIQAIANALRGQESENSQEA 215
              NGN SP+ + SP+  DRKRLRRP RSK F+VEIS+AAKIP+QA+ANA+RGQESENSQEA
Sbjct:   161 ANGNGSPNGNESPSDGDRKRLRRPNRSKNFRVEISYAAKIPLQALANAMRGQESENSQEA 220

Query:   216 FRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNI 275
              RVLDIILRQHAA+QGCLLVRQSFFHNDP N   VGG +LGCRGFHSSFRTTQGG+SLN+
Sbjct:   221 IRVLDIILRQHAARQGCLLVRQSFFHNDPTNCEPVGGNILGCRGFHSSFRTTQGGMSLNM 280

Query:   276 DVSTTMIIQPGPVVDFLIANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEYKITGLSEK 335
             DV+TTMII+PGPVVDFLIANQN RDP+SIDW+KAKRTLKNLR+K   S QE+KITGLS+K
Sbjct:   281 DVTTTMIIKPGPVVDFLIANQNARDPYSIDWSKAKRTLKNLRVKVSPSGQEFKITGLSDK 340

Query:   336 LCKEQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYI 395
              C+EQ F LK++N  +++GE +  E+TV DYF + R+IDL+YS DLPCINVGKPKRPTYI
Sbjct:   341 PCREQTFELKKRN-PNENGEFETTEVTVADYFRDTRHIDLQYSADLPCINVGKPKRPTYI 399

Query:   396 PLELCELVSLQRYTKALTNLQRASLVEKSRQKPQERMSVLSNALKLSKYDNEPMLRSCGI 455
             PLELC LV LQRYTKALT  QR++LVEKSRQKPQERM+VLS ALK+S YD EP+LRSCGI
Sbjct:   400 PLELCALVPLQRYTKALTTFQRSALVEKSRQKPQERMTVLSKALKVSNYDAEPLLRSCGI 459

Query:   456 SISTNFAQVEGRVLPAPRLKFGNGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSARCD 515
             SIS+NF QVEGRVLPAP+LK G G +  PRNGRWNFNNK+ V+PTKI+RW VVNFSARC+
Sbjct:   460 SISSNFTQVEGRVLPAPKLKMGCGSETFPRNGRWNFNNKEFVEPTKIQRWVVVNFSARCN 519

Query:   516 IRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLL 575
             +R +V DLIK G  KGI I  PF VFEE  QFRR+ P++RVE MF +IQSKLPG PQF+L
Sbjct:   520 VRQVVDDLIKIGGSKGIEIASPFQVFEEGNQFRRAPPMIRVENMFKDIQSKLPGVPQFIL 579

Query:   576 CLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMRV-NDQYLTNVLLKINAKLGGLNSLLA 634
             C+LP++KNSDLYGPWK+KNL +FGIVTQCMAP R  NDQYLTN+LLKINAKLGGLNS+L+
Sbjct:   580 CVLPDKKNSDLYGPWKKKNLTEFGIVTQCMAPTRQPNDQYLTNLLLKINAKLGGLNSMLS 639

Query:   635 VEHSPSIPIVSKVPTIILGMDVSHGSPGHSDIPSIAAVVSSRHWPLISRYRAAVRTQSPK 694
             VE +P+  ++SKVPTIILGMDVSHGSPG SD+PSIAAVVSSR WPLIS+YRA+VRTQ  K
Sbjct:   640 VERTPAFTVISKVPTIILGMDVSHGSPGQSDVPSIAAVVSSREWPLISKYRASVRTQPSK 699

Query:   695 VEMIDSLFKKVSDTEDEGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQVLNVELN 754
              EMI+SL KK + TED+GII+ELL+DFYTSS KRKPE IIIFRDGVSESQFNQVLN+EL+
Sbjct:   700 AEMIESLVKK-NGTEDDGIIKELLVDFYTSSNKRKPEHIIIFRDGVSESQFNQVLNIELD 758

Query:   755 QIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQSGSPDNVPPGTVVDNKVCHPRNYDFYLC 814
             QIIEACK LD  W+PKF ++VAQKNHHTKFFQ  SP+NVPPGT++DNK+CHP+N DFYLC
Sbjct:   759 QIIEACKLLDANWNPKFLLLVAQKNHHTKFFQPTSPENVPPGTIIDNKICHPKNNDFYLC 818

Query:   815 AHAGMIGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISV 862
             AHAGMIGT+RPTHYHVL+DEIGFS+DELQELVHSLSYVYQRST+AISV
Sbjct:   819 AHAGMIGTTRPTHYHVLYDEIGFSADELQELVHSLSYVYQRSTSAISV 866
GO:0005634 "nucleus" evidence=ISM
GO:0006342 "chromatin silencing" evidence=RCA;IMP
GO:0005730 "nucleolus" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0005719 "nuclear euchromatin" evidence=IDA
GO:0015030 "Cajal body" evidence=IDA
GO:0051567 "histone H3-K9 methylation" evidence=RCA;IMP
GO:0006306 "DNA methylation" evidence=RCA;IMP
GO:0010495 "long-distance posttranscriptional gene silencing" evidence=IMP
GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP
GO:0031048 "chromatin silencing by small RNA" evidence=RCA;TAS
GO:0030422 "production of siRNA involved in RNA interference" evidence=IGI
GO:0035197 "siRNA binding" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
GO:0000023 "maltose metabolic process" evidence=RCA
GO:0000226 "microtubule cytoskeleton organization" evidence=RCA
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0000724 "double-strand break repair via homologous recombination" evidence=RCA
GO:0000911 "cytokinesis by cell plate formation" evidence=RCA
GO:0006260 "DNA replication" evidence=RCA
GO:0006261 "DNA-dependent DNA replication" evidence=RCA
GO:0006275 "regulation of DNA replication" evidence=RCA
GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA
GO:0007267 "cell-cell signaling" evidence=RCA
GO:0008283 "cell proliferation" evidence=RCA
GO:0009555 "pollen development" evidence=RCA
GO:0009616 "virus induced gene silencing" evidence=RCA
GO:0009855 "determination of bilateral symmetry" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0009965 "leaf morphogenesis" evidence=RCA
GO:0010014 "meristem initiation" evidence=RCA
GO:0010073 "meristem maintenance" evidence=RCA
GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA
GO:0016246 "RNA interference" evidence=RCA
GO:0016444 "somatic cell DNA recombination" evidence=RCA
GO:0016458 "gene silencing" evidence=RCA
GO:0016568 "chromatin modification" evidence=RCA
GO:0016569 "covalent chromatin modification" evidence=RCA
GO:0016570 "histone modification" evidence=RCA
GO:0016572 "histone phosphorylation" evidence=RCA
GO:0019252 "starch biosynthetic process" evidence=RCA
GO:0031047 "gene silencing by RNA" evidence=RCA
GO:0034968 "histone lysine methylation" evidence=RCA
GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA
GO:0043085 "positive regulation of catalytic activity" evidence=RCA
GO:0048449 "floral organ formation" evidence=RCA
GO:0051225 "spindle assembly" evidence=RCA
GO:0051726 "regulation of cell cycle" evidence=RCA
TAIR|locus:2179008 AGO9 "ARGONAUTE 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2147072 AT5G21030 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2059370 AGO6 "ARGONAUTE 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057851 AGO5 "ARGONAUTE 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0262739 AGO1 "Argonaute-1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1LUQ5 Eif2c4 "Protein Eif2c4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q4KLV6 eif2c4 "Protein argonaute-4" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|F1P3Z1 EIF2C4 "Protein argonaute-4" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q9HCK5 EIF2C4 "Protein argonaute-4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9UKV8AGO2_HUMAN3, ., 1, ., 2, 6, ., n, 20.32540.84410.8637yesno
Q9QZ81AGO2_RAT3, ., 1, ., 2, 6, ., n, 20.32540.84410.8627yesno
Q9ZVD5AGO4_ARATHNo assigned EC number0.72750.97610.9285yesno
Q9SDG8AGO4A_ORYSJNo assigned EC number0.73580.92150.8960nono
Q0JF58AGO4B_ORYSJNo assigned EC number0.72810.94420.9110yesno
Q8CJG0AGO2_MOUSE3, ., 1, ., 2, 6, ., n, 20.32540.84410.8627yesno
Q6DJB9AGO2_XENTR3, ., 1, ., 2, 6, ., n, 20.32390.84410.8518yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00017422001
SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (916 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query879
PLN03202900 PLN03202, PLN03202, protein argonaute; Provisional 0.0
cd04657426 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain 1e-172
smart00950301 smart00950, Piwi, This domain is found in the prot 1e-103
pfam02171296 pfam02171, Piwi, Piwi domain 1e-102
cd04658448 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: P 5e-77
cd02826393 cd02826, Piwi-like, Piwi-like: PIWI domain 3e-59
pfam02170114 pfam02170, PAZ, PAZ domain 8e-29
cd02846114 cd02846, PAZ_argonaute_like, PAZ domain, argonaute 3e-28
pfam0869952 pfam08699, DUF1785, Domain of unknown function (DU 4e-20
smart00949138 smart00949, PAZ, This domain is named PAZ after th 1e-05
cd02825115 cd02825, PAZ, PAZ domain, named PAZ after the prot 8e-04
>gnl|CDD|215631 PLN03202, PLN03202, protein argonaute; Provisional Back     alignment and domain information 
 Score = 1771 bits (4589), Expect = 0.0
 Identities = 708/845 (83%), Positives = 777/845 (91%), Gaps = 3/845 (0%)

Query: 18  PDSLPPPPPVIPPDFVPTRVEEQEPAKKKVVRVPISRRGLGSRGQRISLLTNHFKVNVTN 77
            D+LPPPPPV+PP+ VP ++E       K  R+P++RRG GS+GQ+I LLTNHFKV+V N
Sbjct: 1   KDALPPPPPVVPPNVVPIKLEP-TKKPSKPKRLPMARRGFGSKGQKIQLLTNHFKVSVNN 59

Query: 78  VEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETYNAELDGKDFAYDGEKSLFTVGPL 137
            +GHF+HYSVS++YEDGRPVDGKG GRKVID+VQETY+++L GKDFAYDGEKSLFTVG L
Sbjct: 60  PDGHFFHYSVSLTYEDGRPVDGKGIGRKVIDKVQETYSSDLAGKDFAYDGEKSLFTVGAL 119

Query: 138 PRNKLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRKRLRRPYRSKTFKVEISFAAKIPI 197
           P+NKLEFTVVLED+SSNRNNGN SP  +GSPNG DRKR RRPY+SKTFKVEISFAAKIP+
Sbjct: 120 PQNKLEFTVVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRRPYQSKTFKVEISFAAKIPM 179

Query: 198 QAIANALRGQESENSQEAFRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGC 257
           QAIANALRGQESENSQ+A RVLDIILRQHAAKQGCLLVRQSFFHNDPKNF D+GGGVLGC
Sbjct: 180 QAIANALRGQESENSQDALRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGC 239

Query: 258 RGFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPFSIDWAKAKRTLKNLR 317
           RGFHSSFRTTQGGLSLNIDVSTTMI+QPGPVVDFLIANQNVRDPF IDW+KAKR LKNLR
Sbjct: 240 RGFHSSFRTTQGGLSLNIDVSTTMIVQPGPVVDFLIANQNVRDPFQIDWSKAKRMLKNLR 299

Query: 318 IKTITSNQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNIDLRY 377
           +K   SNQEYKITGLSEK CKEQ FSLKQ+N   +  EV+ +EITVYDYFV +R I+LRY
Sbjct: 300 VKVSPSNQEYKITGLSEKPCKEQTFSLKQRN--GNGNEVETVEITVYDYFVKHRGIELRY 357

Query: 378 SGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQERMSVLSN 437
           SGDLPCINVGKPKRPTY P+ELC LVSLQRYTKAL+ LQR+SLVEKSRQKPQERM VL++
Sbjct: 358 SGDLPCINVGKPKRPTYFPIELCSLVSLQRYTKALSTLQRSSLVEKSRQKPQERMKVLTD 417

Query: 438 ALKLSKYDNEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGEDFSPRNGRWNFNNKKLV 497
           ALK S YD +PMLRSCGISIS+ F QVEGRVLPAP+LK GNGEDF PRNGRWNFNNKKLV
Sbjct: 418 ALKSSNYDADPMLRSCGISISSQFTQVEGRVLPAPKLKVGNGEDFFPRNGRWNFNNKKLV 477

Query: 498 QPTKIERWAVVNFSARCDIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVE 557
           +PTKIERWAVVNFSARCDIR LVRDLIKCGEMKGI I+ PFDVFEE+PQFRR+ P VRVE
Sbjct: 478 EPTKIERWAVVNFSARCDIRHLVRDLIKCGEMKGINIEPPFDVFEENPQFRRAPPPVRVE 537

Query: 558 KMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMRVNDQYLTN 617
           KMF++IQSKLPG PQFLLC+LPERKNSD+YGPWK+KNL++FGIVTQC+AP RVNDQYLTN
Sbjct: 538 KMFEQIQSKLPGPPQFLLCILPERKNSDIYGPWKKKNLSEFGIVTQCIAPTRVNDQYLTN 597

Query: 618 VLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSDIPSIAAVVSSRH 677
           VLLKINAKLGGLNSLLA+EHSPSIP+VSKVPTIILGMDVSHGSPG SD+PSIAAVVSSR 
Sbjct: 598 VLLKINAKLGGLNSLLAIEHSPSIPLVSKVPTIILGMDVSHGSPGQSDVPSIAAVVSSRQ 657

Query: 678 WPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSSGKRKPEQIIIFR 737
           WPLISRYRA+VRTQSPKVEMIDSLFK V D +D+GIIRELLLDFYTSSGKRKPEQIIIFR
Sbjct: 658 WPLISRYRASVRTQSPKVEMIDSLFKPVGDKDDDGIIRELLLDFYTSSGKRKPEQIIIFR 717

Query: 738 DGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQSGSPDNVPPGT 797
           DGVSESQFNQVLN+EL+QIIEACKFLDE WSPKF VIVAQKNHHTKFFQ+GSPDNVPPGT
Sbjct: 718 DGVSESQFNQVLNIELDQIIEACKFLDESWSPKFTVIVAQKNHHTKFFQAGSPDNVPPGT 777

Query: 798 VVDNKVCHPRNYDFYLCAHAGMIGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRST 857
           VVDNK+CHPRN DFY+CAHAGMIGT+RPTHYHVL DEIGFS+D+LQELVHSLSYVYQRST
Sbjct: 778 VVDNKICHPRNNDFYMCAHAGMIGTTRPTHYHVLLDEIGFSADDLQELVHSLSYVYQRST 837

Query: 858 TAISV 862
           TAISV
Sbjct: 838 TAISV 842

Length = 900
>gnl|CDD|240015 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain, Argonaute-like subfamily Back     alignment and domain information
>gnl|CDD|214930 smart00950, Piwi, This domain is found in the protein Piwi and its relatives Back     alignment and domain information
>gnl|CDD|216915 pfam02171, Piwi, Piwi domain Back     alignment and domain information
>gnl|CDD|240016 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes Back     alignment and domain information
>gnl|CDD|239208 cd02826, Piwi-like, Piwi-like: PIWI domain Back     alignment and domain information
>gnl|CDD|216914 pfam02170, PAZ, PAZ domain Back     alignment and domain information
>gnl|CDD|239212 cd02846, PAZ_argonaute_like, PAZ domain, argonaute_like subfamily Back     alignment and domain information
>gnl|CDD|219976 pfam08699, DUF1785, Domain of unknown function (DUF1785) Back     alignment and domain information
>gnl|CDD|198017 smart00949, PAZ, This domain is named PAZ after the proteins Piwi Argonaut and Zwille Back     alignment and domain information
>gnl|CDD|239207 cd02825, PAZ, PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 879
PLN03202900 protein argonaute; Provisional 100.0
KOG1041876 consensus Translation initiation factor 2C (eIF-2C 100.0
KOG1042845 consensus Germ-line stem cell division protein Hiw 100.0
cd04657426 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaut 100.0
cd04658448 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain 100.0
cd02826393 Piwi-like Piwi-like: PIWI domain. Domain found in 100.0
PF02171302 Piwi: Piwi domain; InterPro: IPR003165 This domain 100.0
cd04659404 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI 100.0
PF02170135 PAZ: PAZ domain; InterPro: IPR003100 This domain i 99.88
cd02846114 PAZ_argonaute_like PAZ domain, argonaute_like subf 99.79
cd02825115 PAZ PAZ domain, named PAZ after the proteins Piwi 99.78
cd02845117 PAZ_piwi_like PAZ domain, Piwi_like subfamily. In 99.74
PF0869952 DUF1785: Domain of unknown function (DUF1785); Int 99.54
cd02844135 PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF ( 99.4
COG1431685 Argonaute homolog, implicated in RNA metabolism [T 99.01
cd02843122 PAZ_dicer_like PAZ domain, dicer_like subfamily. D 98.39
PF13032138 DUF3893: Domain of unknown function (DUF3893) 91.81
PF08459155 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; I 85.97
>PLN03202 protein argonaute; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.4e-178  Score=1617.32  Aligned_cols=853  Identities=83%  Similarity=1.319  Sum_probs=765.9

Q ss_pred             CCCCCCCCCCCCCCCcCcccccccccccccccccCCCCCCCCCCEEEEEeeEEEEEeccccceEEEEEeeeecCCCCCCC
Q 002802           19 DSLPPPPPVIPPDFVPTRVEEQEPAKKKVVRVPISRRGLGSRGQRISLLTNHFKVNVTNVEGHFYHYSVSVSYEDGRPVD   98 (879)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rpg~Gt~G~~i~l~tN~f~v~~~~~~~~~y~Y~V~i~~~~~~~v~   98 (879)
                      +++||++|.+|+++++...+..+ ....+.+.+++|||||+.|++|.|+||||+|.+..++..+|||+|+|+++.+++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~RPg~Gt~G~~i~l~aN~f~v~~~~~~~~ly~Y~V~i~p~~~~~~~   80 (900)
T PLN03202          2 DALPPPPPVVPPNVVPIKLEPTK-KPSKPKRLPMARRGFGSKGQKIQLLTNHFKVSVNNPDGHFFHYSVSLTYEDGRPVD   80 (900)
T ss_pred             CCCCCCCCCCCcccccccccccc-cccccccccCCCCCCCCCCCEEEEEeeEEEEeccCCCCcEEEEEEEeccCCCCccc
Confidence            57899999999999988765322 22466668899999999999999999999999766677899999999876556777


Q ss_pred             CchhHHHHHHHHHHHhhhhcCCCceeeeCCceeeecCCCCCCcceEEEEeccccccCCCCCCCCCCCCCCCCCccccccC
Q 002802           99 GKGAGRKVIDRVQETYNAELDGKDFAYDGEKSLFTVGPLPRNKLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRKRLRR  178 (879)
Q Consensus        99 ~k~~~r~i~~~l~~~~~~~~~~~~~ayDG~k~lys~~~Lp~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (879)
                      +++++|+|++++++++...+.|..+||||+++|||+++||.+..++.|+++++...++..+++|+++++|.+++.+|.++
T Consensus        81 ~~~~~~~i~~~~~~~~~~~~~~~~~~~Dg~~~l~s~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (900)
T PLN03202         81 GKGIGRKVIDKVQETYSSDLAGKDFAYDGEKSLFTVGALPQNKLEFTVVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRR  160 (900)
T ss_pred             chhhhHHHHHHHHHhhHHhhCCCceeecCccceEECccCCCCCceEEEEecccccccccccccccccCCccccccccccc
Confidence            78899999999998876667777899999999999999998777888888764333333456677777887777777777


Q ss_pred             CCCCCeEEEEEEEeeeechHHHHHHHcCCCCcChHHHHHHHHHHHhhhhhhcCceeccccccCCCCCCcccCCCCEEEee
Q 002802          179 PYRSKTFKVEISFAAKIPIQAIANALRGQESENSQEAFRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCR  258 (879)
Q Consensus       179 ~~~~~~f~V~I~~~~~i~l~~l~~~l~g~~~~~~~~aiq~Ldiilr~~~~~~~~~~vg~~fF~~~~~~~~~lg~G~e~~~  258 (879)
                      ..+.+.|+|+|+++++|++.+|.+||.|...+...++||+||+|||+.++..+++.+|++||.++.....+|++|+|+|+
T Consensus       161 ~~~~~~~~v~i~~~~~i~~~~L~~~l~~~~~~~~~~~iq~lnivlr~~~~~~~~~~~gr~ff~~~~~~~~~l~~gle~~~  240 (900)
T PLN03202        161 PYQSKTFKVEISFAAKIPMQAIANALRGQESENSQDALRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGCR  240 (900)
T ss_pred             cCCCceEEEEEEEccccCHHHHHHHHcCCCCCCcHHHHHHHHHHHhhhhhhCCCceeccccCCCCCcccccCCCceEEee
Confidence            77899999999999999999999999998777889999999999999998777888999999876555668999999999


Q ss_pred             cceEEEEEeCCceeEeEecccceeecCchHHHHHHHhcCCCCCCchhHHHHHHHhcCcEEEEeeCCceEEEeecCccccc
Q 002802          259 GFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEYKITGLSEKLCK  338 (879)
Q Consensus       259 Gf~~Svr~~~~gl~LniDvs~~~f~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~Lkgl~V~~~~~~r~~kI~gls~~~~~  338 (879)
                      ||++|||+++++|+||+|+++++|+++++|+|+|.+..+.+++...+|.+++++|+|++|.++|+++.|+|.||++.+++
T Consensus       241 G~~~Svr~~~~~l~LnvDvs~~~F~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~lkGl~V~t~~~~k~yrI~~i~~~~a~  320 (900)
T PLN03202        241 GFHSSFRTTQGGLSLNIDVSTTMIVQPGPVVDFLIANQNVRDPFQIDWSKAKRMLKNLRVKVSPSNQEYKITGLSEKPCK  320 (900)
T ss_pred             eeeeEeeeccCceEEeeeeeeeeeecCCcHHHHHHHhcCcCCccchhHHHHHHHhcCCEEEEecCCceEEEeeccCCCCc
Confidence            99999999999999999999999999999999999876665555567889999999999999999999999999999999


Q ss_pred             ccccccccCCCCCCCCCccceeeeHHHHHHhhcCCcccCCC-CCCeeecCCCCCCceeeccceEEcCCccccccCCHHHH
Q 002802          339 EQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNIDLRYSG-DLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQR  417 (879)
Q Consensus       339 ~~~F~~~~~~~~~~~~~~~~~~iTV~eYF~~~Y~i~L~y~p-~lP~v~vg~~~~~~ylP~Elc~i~~~Qr~~~~Ls~~q~  417 (879)
                      +.+|.++++++  ..+++.+++|||+|||+++|||+|+| | ++|||++|+.++++|||||||.|+|||+++++|++.|+
T Consensus       321 ~~~F~~~~~~~--~~~~~~~~~iSv~dYfk~~Yni~l~~-p~~lPlv~~g~~~~~~ylP~ElC~i~~~Q~~~~~l~~~q~  397 (900)
T PLN03202        321 EQTFSLKQRNG--NGNEVETVEITVYDYFVKHRGIELRY-SGDLPCINVGKPKRPTYFPIELCSLVSLQRYTKALSTLQR  397 (900)
T ss_pred             ceEEEcccCCc--ccccCCcceEEHHHHHHHHcCccccC-CCCCCEEEcCCCCCCeEEcceeeEccCCceechhCCHHHH
Confidence            99998765331  01122246899999999999999999 6 99999999998999999999999999999999999999


Q ss_pred             HHHHHHhcCChHHHHHHHHHHhhhccCCCcccccceeEEeecceeeeeeEEcCCCceecCCCcccCCCCCccccCCceee
Q 002802          418 ASLVEKSRQKPQERMSVLSNALKLSKYDNEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGEDFSPRNGRWNFNNKKLV  497 (879)
Q Consensus       418 ~~mi~~~~~~P~eR~~~i~~~~~~~~~~~~~~L~~~Gi~I~~~~~~v~grvL~~P~i~~g~~~~~~~~~g~Wn~~~~~f~  497 (879)
                      ++||++|+.+|.+|.+.|.++++.++++.+++|++|||+|+++|++|+||||++|+|.||++....|++|+||+++++|+
T Consensus       398 ~~mik~a~~~P~~R~~~i~~~~~~~~~~~~~~l~~fGi~i~~~~~~V~gRvL~~P~I~y~~~~~~~p~~g~Wn~~~~kf~  477 (900)
T PLN03202        398 SSLVEKSRQKPQERMKVLTDALKSSNYDADPMLRSCGISISSQFTQVEGRVLPAPKLKVGNGEDFFPRNGRWNFNNKKLV  477 (900)
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHHhCCCCchHHHHCCcEecCCceEEeEEEcCCceeecCCCcccCCCCCceecCCCEec
Confidence            99999999999999999999999999988999999999999999999999999999999987767789999999999999


Q ss_pred             cccccceEEEEEeCCchhHHHHHHHHHHHHhhcCcccCCCcceeccCccccCCCchHHHHHHHHHHHhhCCCCCeEEEEE
Q 002802          498 QPTKIERWAVVNFSARCDIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCL  577 (879)
Q Consensus       498 ~p~~i~~W~vv~~~~~~~~~~f~~~L~~~~~~~G~~i~~p~~v~~~~~~~~~~~~~~~ve~~~~~~~~~~~~~~~~vl~i  577 (879)
                      +|+++++|++++|+.++++.+|++.|.+.|+.+||.+..|..+...++++.....+.+++.+++.++++++..++|||||
T Consensus       478 ~~~~l~~W~vv~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~qlv~vI  557 (900)
T PLN03202        478 EPTKIERWAVVNFSARCDIRHLVRDLIKCGEMKGINIEPPFDVFEENPQFRRAPPPVRVEKMFEQIQSKLPGPPQFLLCI  557 (900)
T ss_pred             CCCccceEEEEEecCchhHHHHHHHHHHHHHHCCceeCCCccccccccccccccchHHHHHHHHHHHHhccCCCeEEEEE
Confidence            99999999999998767899999999999999999999886554444333323345679999999998876679999999


Q ss_pred             cCCCCCCcchHHHHHHhhcccCceeeeeeccccchhHHHHHHHHHHhccCCccccccccCCCCCCcccCCCEEEEEEEee
Q 002802          578 LPERKNSDLYGPWKRKNLADFGIVTQCMAPMRVNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVS  657 (879)
Q Consensus       578 lp~~~~~~~Y~~iK~~~~~~~gV~TQci~~~~~~~q~~~Ni~lKiNaKLGG~n~~l~~~~~~~~p~~~~~~tmiiG~DVs  657 (879)
                      ||++++.++|+.||++||++.||+||||..++.++||++||+||||+||||+||.|+.+....+|++.+.+|||||+||+
T Consensus       558 lp~~~~~~~Y~~IK~~~~~~~gV~TQcv~~~~~~~q~~~NIalKiN~KLGG~n~~~~~~~~~~i~~~~~~~tMivG~DVt  637 (900)
T PLN03202        558 LPERKNSDIYGPWKKKNLSEFGIVTQCIAPTRVNDQYLTNVLLKINAKLGGLNSLLAIEHSPSIPLVSKVPTIILGMDVS  637 (900)
T ss_pred             EcCCCCcchHHHHHHHHhhccCcccEEeCccccchHHHHHHHHHHhhhhCCcceeecccccccCccccCCCeEEEEEEee
Confidence            99745789999999999999999999998777899999999999999999999999876555688888889999999999


Q ss_pred             cCCCCCCCCCeEEEEEEecCCCccceEEEEEEeccccccccccccccccCcchHHHHHHHHHHHHHHhCCCCCceEEEEe
Q 002802          658 HGSPGHSDIPSIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSSGKRKPEQIIIFR  737 (879)
Q Consensus       658 H~~~~~~~~pSiaavV~S~d~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~e~L~~f~~~~~~~~P~~IIiyR  737 (879)
                      ||++|+.+.|||||+|||+|++.+++|++.+++|.+++|+|++|+....++.+++|+.++|+.||+++++.+|++|||||
T Consensus       638 Hp~~g~~~~pSiaa~VaS~d~~~~~~y~s~~~~Q~~~~E~i~~l~~~~~~~~~~~m~~~~L~~~~~~~~~~~P~~IiiyR  717 (900)
T PLN03202        638 HGSPGQSDVPSIAAVVSSRQWPLISRYRASVRTQSPKVEMIDSLFKPVGDKDDDGIIRELLLDFYTSSGKRKPEQIIIFR  717 (900)
T ss_pred             cCCCCCCCCCceEEEEeccCcccccceeeEEEecCCCceeeeehhccccccchHHHHHHHHHHHHHHcCCCCCceeEEEe
Confidence            99998756799999999999867999999999999999999998765555557889999999999987789999999999


Q ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeecccceeecCCCCCCCCCceEeecccccCcccceEecccc
Q 002802          738 DGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQSGSPDNVPPGTVVDNKVCHPRNYDFYLCAHA  817 (879)
Q Consensus       738 DGVsegq~~~V~~~E~~~i~~a~~~~~~~~~Pkit~Ivv~KrhhtRff~~~~~~N~~pGTVVD~~It~p~~~dFyL~sh~  817 (879)
                      ||||||||.+|+++|+++|++||++++++|+|+||||||+||||||||+.+..+||+||||||++||||..||||||||.
T Consensus       718 DGVseGQ~~~Vl~~Ev~~i~~a~~~~~~~~~Pkit~Ivv~Krh~tRff~~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~  797 (900)
T PLN03202        718 DGVSESQFNQVLNIELDQIIEACKFLDESWSPKFTVIVAQKNHHTKFFQAGSPDNVPPGTVVDNKICHPRNNDFYMCAHA  797 (900)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeccceeeeeccCCCCCCCCceEeccccccCCcceEEEeccc
Confidence            99999999999999999999999999989999999999999999999998777999999999999999999999999999


Q ss_pred             CcccccCCceEEEEecCCCCCHHHHHHHHHHhhccccccCCCcchhhHHHHHHHHHHh
Q 002802          818 GMIGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVGNLKNLMLVVLAS  875 (879)
Q Consensus       818 ~~qGTarPthY~Vl~de~~~~~d~lq~lt~~Lc~~y~r~t~svsipaP~yYA~~~~~~  875 (879)
                      ++|||||||||+||+||+++++|+||+|||+|||+|+|||++|||||||||||++|.+
T Consensus       798 ~~qGTarPthY~Vl~de~~~~~d~lq~lty~lc~~y~~~t~~VsvpaP~yYAhlla~r  855 (900)
T PLN03202        798 GMIGTTRPTHYHVLLDEIGFSADDLQELVHSLSYVYQRSTTAISVVAPVCYAHLAAAQ  855 (900)
T ss_pred             ccccCCcCceEEEEECCCCCCHHHHHHHHHHHhhhhcccCCceecchhHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999975

>KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily Back     alignment and domain information
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes Back     alignment and domain information
>cd02826 Piwi-like Piwi-like: PIWI domain Back     alignment and domain information
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster [] Back     alignment and domain information
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria Back     alignment and domain information
>PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille Back     alignment and domain information
>cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily Back     alignment and domain information
>cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille Back     alignment and domain information
>cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily Back     alignment and domain information
>PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO Back     alignment and domain information
>cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily Back     alignment and domain information
>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily Back     alignment and domain information
>PF13032 DUF3893: Domain of unknown function (DUF3893) Back     alignment and domain information
>PF08459 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; InterPro: IPR001162 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query879
4f3t_A861 Human Argonaute-2 - Mir-20a Complex Length = 861 1e-109
4ei1_A859 Crystal Structure Of Human Argonaute2 Length = 859 1e-109
2yhb_A437 Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Pi 4e-35
4f1n_A1046 Crystal Structure Of Kluyveromyces Polysporus Argon 2e-30
2yha_A388 Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Pi 3e-19
1r4k_A169 Solution Structure Of The Drosophila Argonaute 1 Pa 2e-14
4g0o_A139 Crystal Structure Of Arabidopsis Thaliana Ago5 Mid 8e-14
3vnb_A155 Structural Insights Into Small Rna Sorting And Mrna 3e-12
1si2_A149 Crystal Structure Of The Paz Domain Of Human Eif2c1 2e-10
1si3_A149 Crystal Structure Of The Paz Domain Of Human Eif2c1 8e-10
4g0p_A147 Crystal Structure Of Arabidopsis Thaliana Ago1 Mid 6e-09
3vna_A154 Structural Insights Into Small Rna Sorting And Mrna 7e-09
4g0x_A147 Crystal Structure Of Arabidopsis Thaliana Ago1 Mid 6e-08
4g0m_A150 Crystal Structure Of Arabidopsis Thaliana Ago2 Mid 3e-05
3luc_A138 Crystal Structure Of Mid Domain From Hago2 Length = 8e-05
>pdb|4F3T|A Chain A, Human Argonaute-2 - Mir-20a Complex Length = 861 Back     alignment and structure 
Iteration: 1

 Score =  394 bits (1013), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 274/843 (32%), Positives = 427/843 (50%), Gaps = 99/843 (11%)
Query: 51  PISRRGLGSRGQRISLLTNHFKVNVTNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRV 110
           P  R   G+ G+ I L  N F++++  ++   YHY + +  E       +   R++++ +
Sbjct: 27  PPPRPDFGTSGRTIKLQANFFEMDIPKID--IYHYELDIKPEKC----PRRVNREIVEHM 80
Query: 111 QETYNAELDG-KDFAYDGEKSLFTVGPLP--RNKLEFTVVLEDISSNRNNGNASPDAHGS 167
            + +  ++ G +   +DG K+L+T  PLP  R+K+E  V L                   
Sbjct: 81  VQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPG----------------- 123
Query: 168 PNGNDRKRLRRPYRSKTFKVEISFAAKIPIQAIANALRGQESENSQEAFRVLDIILRQHA 227
             G DR           FKV I + + + +QA+ +AL G+      E  + LD+++R H 
Sbjct: 124 -EGKDR----------IFKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMR-HL 171
Query: 228 AKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPGP 287
                  V +SFF         +GGG     GFH S R +   + LNIDVS T   +  P
Sbjct: 172 PSMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQP 231
Query: 288 VVDFLI------ANQNVRDPFSIDWAKAKRT--LKNLRIKTITSNQ---EYKITGLSEKL 336
           V++F+       + +  + P + D  + K T  +K L+++     Q   +Y++  ++ + 
Sbjct: 232 VIEFVCEVLDFKSIEEQQKPLT-DSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRP 290
Query: 337 CKEQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIP 396
              Q F L+Q++        Q +E TV  YF +   + LRY   LPC+ VG+ ++ TY+P
Sbjct: 291 ASHQTFPLQQES-------GQTVECTVAQYFKDRHKLVLRYP-HLPCLQVGQEQKHTYLP 342
Query: 397 LELCELVSLQRYTKALTNLQRASLVEKSRQKPQERMSVLSNALKLSKYDNEPMLRSCGIS 456
           LE+C +V+ QR  K LT+ Q ++++  + +   +R   +S  ++ + ++ +P +R  GI 
Sbjct: 343 LEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYVREFGIM 402
Query: 457 ISTNFAQVEGRVLPAPRLKFG--NGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSAR- 513
           +      V GRVL  P + +G  N    +P  G W+  NK+     +I+ WA+  F+ + 
Sbjct: 403 VKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQR 462
Query: 514 ----CDIRSLVRDLIKCGEMKGILID-QPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLP 568
                 ++S    L K     G+ I  QP   F +  Q   S     VE MF  +++   
Sbjct: 463 QCTEVHLKSFTEQLRKISRDAGMPIQGQP--CFCKYAQGADS-----VEPMFRHLKNTYA 515
Query: 569 GAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMA---PMRVNDQYLTNVLLKINAK 625
           G  Q ++ +LP +  + +Y   KR      G+ TQC+      R   Q L+N+ LKIN K
Sbjct: 516 GL-QLVVVILPGK--TPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVK 572
Query: 626 LGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSDIPSIAAVVSSRHWPLISRYR 685
           LGG+N++L  +  P    V + P I LG DV+H   G    PSIAAVV S      +RY 
Sbjct: 573 LGGVNNILLPQGRPP---VFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPNRYC 628
Query: 686 AAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQF 745
           A VR Q  + E+I  L           ++RELL+ FY S+ + KP +II +RDGVSE QF
Sbjct: 629 ATVRVQQHRQEIIQDL---------AAMVRELLIQFYKST-RFKPTRIIFYRDGVSEGQF 678
Query: 746 NQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQS------GSPDNVPPGTVV 799
            QVL+ EL  I EAC  L++ + P    IV QK HHT+ F +      G   N+P GT V
Sbjct: 679 QQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGTTV 738
Query: 800 DNKVCHPRNYDFYLCAHAGMIGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTA 859
           D K+ HP  +DFYLC+HAG+ GTSRP+HYHVL+D+  FSSDELQ L + L + Y R T +
Sbjct: 739 DTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRS 798
Query: 860 ISV 862
           +S+
Sbjct: 799 VSI 801
>pdb|4EI1|A Chain A, Crystal Structure Of Human Argonaute2 Length = 859 Back     alignment and structure
>pdb|2YHB|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi Domains Length = 437 Back     alignment and structure
>pdb|4F1N|A Chain A, Crystal Structure Of Kluyveromyces Polysporus Argonaute With A Guide Rna Length = 1046 Back     alignment and structure
>pdb|2YHA|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi Domains Length = 388 Back     alignment and structure
>pdb|1R4K|A Chain A, Solution Structure Of The Drosophila Argonaute 1 Paz Domain Length = 169 Back     alignment and structure
>pdb|4G0O|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago5 Mid Domain Length = 139 Back     alignment and structure
>pdb|3VNB|A Chain A, Structural Insights Into Small Rna Sorting And Mrna Binding By Arabidopsis Ago Domains Length = 155 Back     alignment and structure
>pdb|1SI2|A Chain A, Crystal Structure Of The Paz Domain Of Human Eif2c1 In Complex With A 9-Mer Sirna-Like Duplex Of Deoxynucleotide Overhang Length = 149 Back     alignment and structure
>pdb|1SI3|A Chain A, Crystal Structure Of The Paz Domain Of Human Eif2c1 In Complex With A 9-Mer Sirna-Like Duplex Length = 149 Back     alignment and structure
>pdb|4G0P|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain In Complex With Ump Length = 147 Back     alignment and structure
>pdb|3VNA|A Chain A, Structural Insights Into Small Rna Sorting And Mrna Binding By Arabidopsis Ago Mid Domains Length = 154 Back     alignment and structure
>pdb|4G0X|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain Length = 147 Back     alignment and structure
>pdb|4G0M|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago2 Mid Domain Length = 150 Back     alignment and structure
>pdb|3LUC|A Chain A, Crystal Structure Of Mid Domain From Hago2 Length = 138 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query879
4f3t_A861 Protein argonaute-2; hydrolase/gene regulation, RN 0.0
4f1n_A1046 Kpago; argonaute, RNAI, RNAse H, RNA binding prote 0.0
2yhb_A437 QDE-2, post-transcriptional gene silencing protein 1e-103
3ho1_A685 Argonaute; argonaute, protein-DNA-RNA complex, nuc 1e-101
1yvu_A706 Hypothetical protein AQ_1447; RNAse H fold, RNA bi 4e-97
2yha_A388 Post-transcriptional gene silencing protein QDE-2; 4e-77
2w42_A427 PIWI, putative uncharacterized protein; RNAI, RISC 5e-61
1u04_A771 Argonaute, hypothetical protein PF0537; RNAI, sile 3e-57
4g0x_A147 Protein argonaute 1; MID domain, small RNA 5' nucl 1e-35
4g0o_A139 Protein argonaute 5; MID domain, small RNA 5' nucl 3e-35
4g0m_A150 Protein argonaute 2; MID domain, small RNA 5' nucl 2e-34
3luc_A138 Protein argonaute-2; MID domain, ribonucleoprotein 1e-30
1vyn_A143 Argonaute2; nucleic acid binding, RNA interference 2e-27
3mj0_A124 Protein argonaute-2; argonaut, PAZ domain, 3'-END 1e-26
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
2xfm_A150 MIWI, PIWI-like protein 1; RNA-protein complex, di 9e-12
3qir_A148 PIWI-like protein 2; structural genomics consortiu 9e-08
3o7v_X124 PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, 5e-06
1r6z_P509 Chimera of maltose-binding periplasmic protein AN 4e-05
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A Length = 861 Back     alignment and structure
 Score =  662 bits (1709), Expect = 0.0
 Identities = 262/874 (29%), Positives = 415/874 (47%), Gaps = 100/874 (11%)

Query: 16  GAPDSLPPPPPVIPPDFVPTRVEEQEPAKKKVVRVPISRRGLGSRGQRISLLTNHFKVNV 75
           GA  S    P + PP   P       P +    + P  R   G+ G+ I L  N F++++
Sbjct: 1   GAMYS-GAGPALAPPAPPP-------PIQGYAFKPP-PRPDFGTSGRTIKLQANFFEMDI 51

Query: 76  TNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETYNAE-LDGKDFAYDGEKSLFTV 134
                  YHY + +  E       +   R++++ + + +  +    +   +DG K+L+T 
Sbjct: 52  PK--IDIYHYELDIKPE----KCPRRVNREIVEHMVQHFKTQIFGDRKPVFDGRKNLYTA 105

Query: 135 GPLPRNKLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRKRLRRPYRSKTFKVEISFAAK 194
            PLP  + +  + +                           L    + + FKV I + + 
Sbjct: 106 MPLPIGRDKVELEVT--------------------------LPGEGKDRIFKVSIKWVSC 139

Query: 195 IPIQAIANALRGQESENSQEAFRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGV 254
           + +QA+ +AL G+      E  + LD+++R   + +    V +SFF         +GGG 
Sbjct: 140 VSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMR-YTPVGRSFFTASEGCSNPLGGGR 198

Query: 255 LGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPFSI-------DWA 307
               GFH S R +   + LNIDVS T   +  PV++F+    + +               
Sbjct: 199 EVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRV 258

Query: 308 KAKRTLKNLRIKTI---TSNQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITVY 364
           K  + +K L+++        ++Y++  ++ +    Q F L            Q +E TV 
Sbjct: 259 KFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPL-------QQESGQTVECTVA 311

Query: 365 DYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKS 424
            YF +   + LRY   LPC+ VG+ ++ TY+PLE+C +V+ QR  K LT+ Q ++++  +
Sbjct: 312 QYFKDRHKLVLRYP-HLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRAT 370

Query: 425 RQKPQERMSVLSNALKLSKYDNEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGEDF-- 482
            +   +R   +S  ++ + ++ +P +R  GI +      V GRVL  P + +G       
Sbjct: 371 ARSAPDRQEEISKLMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIA 430

Query: 483 SPRNGRWNFNNKKLVQPTKIERWAVVNFSAR-----CDIRSLVRDLIKCGEMKGILIDQP 537
           +P  G W+  NK+     +I+ WA+  F+ +       ++S    L K     G+ I   
Sbjct: 431 TPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQ 490

Query: 538 FDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLAD 597
                     + +     VE MF  +++   G  Q ++ +LP +    +Y   KR     
Sbjct: 491 P------CFCKYAQGADSVEPMFRHLKNTYAG-LQLVVVILPGKT--PVYAEVKRVGDTV 541

Query: 598 FGIVTQCMAP---MRVNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGM 654
            G+ TQC+      R   Q L+N+ LKIN KLGG+N++L        P V + P I LG 
Sbjct: 542 LGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNIL---LPQGRPPVFQQPVIFLGA 598

Query: 655 DVSHGSPGHSDIPSIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGII 714
           DV+H   G    PSIAAVV S      +RY A VR Q  + E+I  L           ++
Sbjct: 599 DVTHPPAGDGKKPSIAAVVGSMD-AHPNRYCATVRVQQHRQEIIQDL---------AAMV 648

Query: 715 RELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVI 774
           RELL+ FY S+   KP +II +RDGVSE QF QVL+ EL  I EAC  L++ + P    I
Sbjct: 649 RELLIQFYKSTR-FKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFI 707

Query: 775 VAQKNHHTKFF------QSGSPDNVPPGTVVDNKVCHPRNYDFYLCAHAGMIGTSRPTHY 828
           V QK HHT+ F      + G   N+P GT VD K+ HP  +DFYLC+HAG+ GTSRP+HY
Sbjct: 708 VVQKRHHTRLFCTDKNERVGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHY 767

Query: 829 HVLFDEIGFSSDELQELVHSLSYVYQRSTTAISV 862
           HVL+D+  FSSDELQ L + L + Y R T ++S+
Sbjct: 768 HVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSI 801
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} Length = 1046 Back     alignment and structure
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa} Length = 437 Back     alignment and structure
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A Length = 685 Back     alignment and structure
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A Length = 706 Back     alignment and structure
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A Length = 388 Back     alignment and structure
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A Length = 427 Back     alignment and structure
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A Length = 771 Back     alignment and structure
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* Length = 147 Back     alignment and structure
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana} Length = 139 Back     alignment and structure
>4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana} Length = 150 Back     alignment and structure
>3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A* Length = 138 Back     alignment and structure
>3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} PDB: 1t2r_A 1t2s_A Length = 124 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus} Length = 150 Back     alignment and structure
>3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A Length = 148 Back     alignment and structure
>3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X* Length = 124 Back     alignment and structure
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1 Length = 509 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 879
d1yvua2392 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 4e-73
d1w9ha1316 c.55.3.10 (A:93-408) Hypothetical protein AF1318 { 3e-62
d1u04a2447 c.55.3.10 (A:324-770) Argonaute homologue PF0537 { 5e-52
d1si2a_126 b.34.14.1 (A:) Eukaryotic translation initiation f 4e-29
d1t2sa_123 b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila 1e-20
d1u04a1322 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Py 8e-06
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} Length = 392 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: PIWI domain
domain: Argonaute homologue Aq 1447
species: Aquifex aeolicus [TaxId: 63363]

 Score =  243 bits (621), Expect = 4e-73
 Identities = 48/359 (13%), Positives = 111/359 (30%), Gaps = 62/359 (17%)

Query: 515 DIRSLVRDLIKCGEMKGILID-QPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQF 573
                +++LI   + KGI +  +   +     +      ++ V                 
Sbjct: 54  RKEEFLKELINFLKNKGIKLKIKGKSLILAQTREEAKEKLIPVINKIK--------DVDL 105

Query: 574 LLCLLPERKNSD------LYGPWKRKNLADFGIVTQCMAPMRVNDQ----YLTNVLLKIN 623
           ++  L E    D      LY   KR+ L    I +Q +    + ++     L NV  ++ 
Sbjct: 106 VIVFLEEYPKVDPYKSFLLYDFVKRE-LLKKMIPSQVILNRTLKNENLKFVLLNVAEQVL 164

Query: 624 AKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSDIPSIAAVVSSRHWPLISR 683
           AK G +           +  +       +G+D+S  +     + ++A          + R
Sbjct: 165 AKTGNIPY--------KLKEIEGKVDAFVGIDISRITRDGKTVNAVAFTKIFNSKGELVR 216

Query: 684 YRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSSGKRKPEQIIIFRDGVSES 743
           Y       +   ++ +                  +       G +K  +I++ RDG    
Sbjct: 217 YY-LTSYPAFGEKLTEKAIGD-------------VFSLLEKLGFKKGSKIVVHRDGR--- 259

Query: 744 QFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQSGSPDNVPPGTVVDNKV 803
               +   E+    +  +     +     ++   K ++ +FF +   +    G       
Sbjct: 260 ----LYRDEVAAFKKYGE----LYGYSLELLEIIKRNNPRFFSN---EKFIKGYFYK--- 305

Query: 804 CHPRNYDFYLCAHAGMIGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISV 862
               +       +    GT +P     ++ E+    + L   + SL+ +   S   I +
Sbjct: 306 -LSEDSVILATYNQVYEGTHQPIKVRKVYGELPV--EVLCSQILSLTLMNYSSFQPIKL 361
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 316 Back     information, alignment and structure
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Length = 447 Back     information, alignment and structure
>d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 Back     information, alignment and structure
>d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 123 Back     information, alignment and structure
>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Length = 322 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query879
d1yvua2392 Argonaute homologue Aq_1447 {Aquifex aeolicus [Tax 100.0
d1u04a2447 Argonaute homologue PF0537 {Pyrococcus furiosus [T 100.0
d1w9ha1316 Hypothetical protein AF1318 {Archaeoglobus fulgidu 100.0
d1u04a1322 Argonaute homologue PF0537 {Pyrococcus furiosus [T 100.0
d1si2a_126 Eukaryotic translation initiation factor 2C 1, EIF 99.95
d1t2sa_123 Argonaute 2 {Fruit fly (Drosophila melanogaster) [ 99.93
d1b0aa2121 Tetrahydrofolate dehydrogenase/cyclohydrolase {Esc 87.55
d1a4ia2125 Tetrahydrofolate dehydrogenase/cyclohydrolase {Hum 82.05
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: PIWI domain
domain: Argonaute homologue Aq 1447
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=0  Score=476.30  Aligned_cols=325  Identities=16%  Similarity=0.160  Sum_probs=249.9

Q ss_pred             CCCEEEEEEEC---CCH-HHHHHHHHHHHHHHHCCCCCCC-CCCEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             53138999948---800-0999999999997623964579-951010695334898057899999999853999982999
Q 002802          501 KIERWAVVNFS---ARC-DIRSLVRDLIKCGEMKGILIDQ-PFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLL  575 (879)
Q Consensus       501 ~i~~Wavv~~~---~~~-~~~~f~~~L~~~~~~~G~~i~~-P~~i~~~~~~~~~~~~~~~ve~~~~~~~~~~~~~~~~il  575 (879)
                      .+-.|.++.+.   ... ..++|++.|.+.|+.+||++.. |..+.....      .....+.+.+.+++.  ..+++++
T Consensus        36 ~~~~~~~i~~~~~~~~~~~~~~f~~~l~~~~~~~G~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~--~~~~l~~  107 (392)
T d1yvua2          36 DVLSVEIISVSVYKKLEWRKEEFLKELINFLKNKGIKLKIKGKSLILAQT------REEAKEKLIPVINKI--KDVDLVI  107 (392)
T ss_dssp             SEEEEEEEEEEC-----CHHHHHHHHHHHHHHTTTCEEEEEEEEEEECSS------TTHHHHHHHHHHTTT--SSCSEEE
T ss_pred             CCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCEECCCCCCEEECCC------CCCHHHHHHHHHHHC--CCCCEEE
T ss_conf             63442478999963106679999999999998629264578867131277------511599999998402--6777899


Q ss_pred             EECCCCCCC------CCHHHHHHHHHCCCCCEEEEEECCCC---CHH-HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             992899998------64477999742023924456402345---645-79899999882049943233434799988325
Q 002802          576 CLLPERKNS------DLYGPWKRKNLADFGIVTQCMAPMRV---NDQ-YLTNVLLKINAKLGGLNSLLAVEHSPSIPIVS  645 (879)
Q Consensus       576 ~ilp~~k~~------~~Y~~iK~~~~~~~gI~TQci~~~~~---~~q-~~~Ni~lKiNaKLGG~n~~l~~~~~~~~p~~~  645 (879)
                      ||+|+.++.      ++|..||++| .+.||+||||..+++   +.+ ++.||++|||+||||+||.+..     .+   
T Consensus       108 vi~~~~~~~~~~~~~~~Y~~IK~~~-~~~gIptQ~i~~~tl~~~~~~~~~~NIalqinaKlGGipw~l~~-----~~---  178 (392)
T d1yvua2         108 VFLEEYPKVDPYKSFLLYDFVKREL-LKKMIPSQVILNRTLKNENLKFVLLNVAEQVLAKTGNIPYKLKE-----IE---  178 (392)
T ss_dssp             EEEC----------CHHHHHHHHHH-HHTTCCCEEEEHHHHHHSCHHHHHHHHHHHHHHHTTCCSCEESC-----CT---
T ss_pred             EEECCCCCCCCCCCHHHHHHHHHHH-HCCCCCCEEECHHHCCCCCCHHHHHHHHHHHHHHHCCCCEECCC-----CC---
T ss_conf             9976888866555404799999998-54996648988666168983589999999999984983468878-----89---


Q ss_pred             CCCEEEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             88879999984239999999882999997068895321778999605663111232223568624899999999999872
Q 002802          646 KVPTIILGMDVSHGSPGHSDIPSIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSS  725 (879)
Q Consensus       646 ~~~tmiiG~DVsH~~~~~~~~pSiaavVaS~d~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~i~e~L~~f~~~~  725 (879)
                      ..+|||||+||+|++++....+++++++++.++.....| .....|..++|++.            .++.++|..|++ .
T Consensus       179 ~~~tmiIGiDv~h~~~~~~~~~~v~~~~~~~~~g~~~~~-~~~~~~~~~ee~~~------------~~~~~~l~~~~~-~  244 (392)
T d1yvua2         179 GKVDAFVGIDISRITRDGKTVNAVAFTKIFNSKGELVRY-YLTSYPAFGEKLTE------------KAIGDVFSLLEK-L  244 (392)
T ss_dssp             TCCSEEEEECEEECCCSSSCCCEEEEEEEECTTSCEEEE-EEEEECSCTTHHHH------------HHHHHHHHHHHH-T
T ss_pred             CCCEEEEEEEEEECCCCCCCCCEEEEEEEECCCCCEEEE-EEEECCCCCHHHHH------------HHHHHHHHHHHH-H
T ss_conf             997599999987158889846389999998689977899-98854776078999------------999999999999-6


Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCEEECCCCCCCCCCCEEEECCCCC
Q ss_conf             99999449997157793679999999999999999981489998199999843232001037999999990075065556
Q 002802          726 GKRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQSGSPDNVPPGTVVDNKVCH  805 (879)
Q Consensus       726 ~~~~P~~IIiyRDGvsegqf~~Vl~~Ei~~i~~a~~~~~~~~~Pkit~Ivv~Krh~~Rff~~~~~~N~~pGTvVD~~i~~  805 (879)
                      ++.+|++|||||||++.       ++|+++|++||+.+    .|++++|+|+||||+|||+.   +|+++||++.    .
T Consensus       245 ~~~~P~rIIi~RdG~~~-------~~El~~i~~a~~~~----~pki~~IvV~Krh~~Rff~~---~~~~~Gt~v~----~  306 (392)
T d1yvua2         245 GFKKGSKIVVHRDGRLY-------RDEVAAFKKYGELY----GYSLELLEIIKRNNPRFFSN---EKFIKGYFYK----L  306 (392)
T ss_dssp             TCCTTCEEEEEESSCCC-------HHHHHHHHHHHHHH----TCEEEEEEEECSSCCCEECS---CSCCTTEEEE----B
T ss_pred             CCCCCCEEEEEECCCCC-------HHHHHHHHHHHHHC----CCCEEEEEEEECCCEEECCC---CCCCCCCEEE----C
T ss_conf             49998669999588773-------79999999999864----99589999981588265678---9999998771----7


Q ss_pred             CCCCCEEECCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             86222583112475433378547999658999988999999985203310389865022799999998832
Q 002802          806 PRNYDFYLCAHAGMIGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVGNLKNLMLVVLASY  876 (879)
Q Consensus       806 p~~~dFyL~sh~~~~GTarPthY~Vl~de~~~~~d~lq~lt~~Lc~~y~r~t~svsipaP~~YA~~~a~~~  876 (879)
                      +..++||++||.+.|||+||+||+|++||+  +.|+||++||+|||+|+|||+++|+|+|+||||++|.+-
T Consensus       307 ~~~~~~~~~s~~~~qGT~rP~~Y~vl~d~~--~~d~l~~lt~~Lc~l~~~~t~svslPapi~YA~~lA~~~  375 (392)
T d1yvua2         307 SEDSVILATYNQVYEGTHQPIKVRKVYGEL--PVEVLCSQILSLTLMNYSSFQPIKLPATVHYSDKITKLM  375 (392)
T ss_dssp             SSSEEEECCSCCCSTTCCCCEEEEEEECSS--CHHHHHHHHHHGGGGGCCSSSCCCSCTTTTTHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCCCCCCCEEEEECCCC--CHHHHHHHHHHHHHHCCCCCCCCEECHHHHHHHHHHHHH
T ss_conf             989299997688578777885899988989--989999999997751267189980077999999999997
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1b0aa2 c.58.1.2 (A:2-122) Tetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a4ia2 c.58.1.2 (A:2-126) Tetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure