Citrus Sinensis ID: 002804

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------88
Protein Sequence
MAQMERSQVETTSFCFSPHRHLKSETYRALVQILSHCYDHSQISAAQDSRPGMCGSGELVGPNAAVVDNSLAEKDKAGDEDRWFGDAQIVLDEIQDILQVEENGNLLKQELAVCDGDYETGNFDEGLGQQRMLMDELEHILKGDVIFVHEEDALVNDRQEHVDIQQIVNVESRSEAELQVDKGDSNLDVPKSFDSSVDRNMDSHASKPAEDSEERNSKLRTNSLEFENEMQQKEMEEEKLVHTNGIIGAHDHRAEDVEVEEGEISGHFEVDEVSIDMIIDNAVVSNEKKEDEEQVSKDVTDKTDFPCNEKCGGTEKFSDSTSVCLNAVDHNASGGTVELQETVRNETQCKTKIFADGTATMAIDPDRYNSMPGVGRNKRKASRGEEGISSFSASLDDSTVQKEVVKQRVTQEQGITTKDKLDSGACNKRKRSALSKEKKAKKKQKERKKRAEKNRQLGVRRLKLPQNLKPKTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFVAKGFCNRGDNCLFSHKLPPKEQDPPTPSTCTPELKPSPPLYASNLLKPLNNNKVSHQNVDALSNHGKVSSFKNIEQSVAKSILKPPALAPKGISYLFLGKSSFLEASNLGQGISSPKKSDSSKFANQTAQIASDSVQSRDETPRRIPVATKGVNFLSFGNRSLEDSSGKKLANLFLNRENGAKTSLSNNFGLHETSSSSSCGENDAEVGNATTQIFSNSVQKSNDMPKKTQPAITPRGLNFLSTGKALANNTISNNQARLRSSAGDVINRSLEESPNTPNMSQNSSANPWSLPGSSFTLGHSLDHSAQGYYRSTSNSAQRALEFATKIEPKVKTNQSTVGTAVK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHcccccccccccccccHHHHHHHHHHHHHHcccccHHccccccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHcccccccHHHHHHHHHHcccHHHHHccccccccccccccccccccccccccccccccHHHHHcccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHcccccccccHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccHHHHHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEccHHHHccccccccccccccHHHHHHHHHHHcccccccccEEcccccccccccccccccccHHHHHHHHHHHHHHcccEEEEEccccEEcccccEEEEEEEEEEEccccEEEEEEcccccccHHHHHHHHcccccccHHccccccccccccccccccccccccccEHHHEcccEEcccccccccccccccccEEccEEEEEEEEcccccccccHHHHHHHHHccccccccHHccccccccccccccccccccccccEEEEEEEccccccEEEEEEccccccccccEEEEcccccccEccccccccccccccccccccccccccccccccccccEEcccccccccccccccEEEEEcccccccccccccccccccccccccccccHHHHHHcccccccccccccccccEEHHHEEcccccccccccccccccccccccEHHHHHHHccccccccccccccccccccEEEEcccccccccccccccccccccccccHHHcccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccHHHHHHccccccccccccccccccEEEccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
maqmersqvettsfcfsphrhlksETYRALVQILSHCydhsqisaaqdsrpgmcgsgelvgpnaavvdnslaekdkagdedrwfgdAQIVLDEIQDILQVEENGNLLKQELAVCdgdyetgnfdeglgQQRMLMDELEHILkgdvifvheedalvndrqehvdiqqivnvesrseaelqvdkgdsnldvpksfdssvdrnmdshaskpaedseernsklrTNSLEFENEMQQKEMEEEKLVhtngiigahdhraedveveegeisghfevdevsidMIIDNavvsnekkedeeqvskdvtdktdfpcnekcggtekfsdstSVCLNavdhnasggtveLQETVRNETQCKTKIfadgtatmaidpdrynsmpgvgrnkrkasrgeegissfsaslddstVQKEVVKQRVTqeqgittkdkldsgacnkrKRSALSKEKKAKKKQKERKKRAEKNRQLgvrrlklpqnlkpktvkYCHHYlkgrcqegdkckfshdtvpltkstkACCHfarnscmkgdncpfdhdlskypcenfvakgfcnrgdnclfshklppkeqdpptpstctpelkpspplyasnllkplnnnkvshQNVDalsnhgkvssfkNIEQSVAKsilkppalapkgisylflgkssfleasnlgqgisspkksdsskfanqtaqiasdsvqsrdetprripvatkgvnflsfgnrsledssgkkLANLFLnrengaktslsnnfglhetssssscgendaevgnaTTQIFSnsvqksndmpkktqpaitprglnflsTGKALANNTISNNQARLRSSAGDVinrsleespntpnmsqnssanpwslpgssftlghsldhsaqgyyrstsNSAQRALEFAtkiepkvktnqstvgtavk
Flexible Loop (DISEMBL)
maqmersqvettsfcfsphrhLKSETYRALVQILSHCYDHSQISAAQDSRPGMCGSGELVGPNAAVVDNSLAEKDKAGDEDRWFGDAQIVLDEIQDILQVEENGNLLKQELAVCDGDYETGNFDEGLGQQRMLMDELEHILKGDVIFVHEEDALVNDRQEHVDIQQIVNVESRSEAelqvdkgdsnldvpksfdssvdrnmdshaskpaedseernsklrtnSLEFENEMQQKEMEEEKLVHTNGIIGAHDHRAEDVEVEEGEISghfevdevsidMIIDNAvvsnekkedeeqvskdvtdktdfpcneKCGGTEKFSDSTSVCLNAVDHNASGGTVELQETVRNETQCKTKifadgtatmaidpdrynsmpgvgrnkrkasrgeegissfsaslddstvQKEVVKqrvtqeqgittkdkldsgacnkrkrsalskekkakkkqkerkkraeknrqlgvrrlklpqnlkpktvKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFVAKGFCNRGDNCLFSHKLPPKEQDPPTPSTCTPELKPSPPLYASNLLKPLNNNKVSHQNVDALSNHGKVSSFKNIEQSVAKsilkppalaPKGISYLFLGKSSFLEASNLGQGISSPKKSDSSKFANQTaqiasdsvqsrdetprripvatkgvnflsfgnrsledssGKKLANLFLNRENGAKTSLSNNFGLHETSSSSSCGENDAEVGNATTQIFsnsvqksndmpKKTQPAITPRGLNFLSTGKALANntisnnqarlrSSAGDVINRSLEESPNTPNMSQNSSANPWSLPGSSFTLGHSLDHSAQGYYRSTSNSAQRALEFatkiepkvktnqstvgtavk
Low Complexity Region (SEG)
MAQMERSQVETTSFCFSPHRHLKSETYRALVQILSHCYDHSQISAAQDSRPGMCGSGELVGPNAAVVDNSLAEKDKAGDEDRWFGDAQIVLDEIQDILQVEENGNLLKQELAVCDGDYETGNFDEGLGQQRMLMDELEHILKGDVIFVHEEDALVNDRQEHVDIQQIVNVESRSEAELQVDKGDSNLDVPKSFDSSVDRNMDSHASKPAEDSEERNSKLRTNSLefenemqqkemeeekLVHTNGIIGAHDHRAEDVEVEEGEISGHFEVDEVSIDMIIDNAVVSNEKKEDEEQVSKDVTDKTDFPCNEKCGGTEKFSDSTSVCLNAVDHNASGGTVELQETVRNETQCKTKIFADGTATMAIDPDRYNSMPGVGRNKRKASRGEEGISSFSASLDDSTVQKEVVKQRVTQEQGITTKDKLDSGACNkrkrsalskekkakkkqkerkkraekNRQLGVRRLKLPQNLKPKTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFVAKGFCNRGDNCLFSHKLPPKEQDPPTPSTCTPELKPSPPLYASNLLKPLNNNKVSHQNVDALSNHGKVSSFKNIEQSVAKSILKPPALAPKGISYLFLGKSSFLEASNLGQGISSPKKSDSSKFANQTAQIASDSVQSRDETPRRIPVATKGVNFLSFGNRSLEDSSGKKLANLFLNRENGAKTSLSNNFGLHETSSSSSCGENDAEVGNATTQIFSNSVQKSNDMPKKTQPAITPRGLNFLSTGKALANNTISNNQARLRSSAGDVINRSLEESPNTPNMSQNSSANPWSLPGSSFTLGHSLDHSAQGYYRSTSNSAQRALEFATKIEPKVKTNQSTVGTAVK
Disordered region (IsUnstruct)
*************FCFSPHRHLKSETYRALVQILSHCYDHSQ**************************************DRWFGDAQIVLDEIQDILQVEENGNLLKQELAVCDGDYETGNFDEGLGQQRMLMDELEHILKGDVIFVHEEDALVNDRQEHVDIQQIV***************************************************************************NGIIGAH***********GEISGHFEVDEVSIDMIIDNAVV*************************************SVCLNAVDHNA**GTVELQETVRNETQCKTKIFADGTAT***********************************************************************************************************LKPKTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFVAKGFCNRGDNCLFS*******************************************************************ILK*PALAPKGISYLFLGKSSFL************************************************VNFLS*******************************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
**************CFSPHRHLKSETYRALVQILSHCY*************************************************QIVLDEIQDILQVEEN*NLLKQEL************DEGLGQQRMLMDELEHILKG*********ALVNDRQEHVDIQQIVNVESRSEA*********************************************************************************************************************************************************************************************************************************************************************************************************KYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFVAKGFCNRGDNCLFSHKL*******************************************************************************************************************************************************************************************************************************************************************************************************************AT******************
Disordered Region (DISEMBL)
**************CFSPHRHLKSETYRALVQILSHCYDHSQISAAQDSRPGMCGSGELVGPNAAVVDNSLAEKDKAGDEDRWFGDAQIVLDEIQDILQVEENGNLLKQELAVCDGDYETGNFDEGLGQQRMLMDELEHILKGDVIFVHEEDALVNDRQEHVDIQQIVNVESRSEAELQVDKGDSNLDVPKSFDSS**********************LRTNSLEFENEMQQKEMEEEKLVHTNGIIGAHDHRAEDVEVEEGEISGHFEVDEVSIDMIIDNAVVSN*************TDKTDFPCNEKCGGTEKFSDSTSVCLNAVDHNASGGTVELQETVRNETQCKTKIFADGTATMAIDPDRYNSMPG**************ISSFSASLDDSTVQKEVVKQRVTQEQGITTKDKLDSGA****************************NRQLGVRRLKLPQNLKPKTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFVAKGFCNRGDNCLFSHKLPP**************LKPSPPLYASNLLKPLNNNKVSHQNVDALSNHGKVSSFKNIEQSVAKSILKPPALAPKGISYLFLGKSSFLEASNLG********************************PRRIPVATKGVNFLSFGNRSLEDSSGKKLANLFLNRENGAKTSLSNNFGL**************EVGNATTQIFSNS***********QPAITPRGLNFLSTGKALANNTISNNQARLRSSAGDVINRSLE***************PWSLPGSSFTLGHSLDHSAQGYYRSTSNSAQRALEFATKIEPKV************
Disordered Region (DISPRO)
********VETTSFCFSPHRHLKSETYRALVQILSHCYDHSQIS***************V**NAAVVDNSLAEKDKAGDEDRWFGDAQIVLDEIQDILQVEENGNLLKQELAVCDGDYETGNFDEGLGQQRMLMDELEHILKGDVIFVHEEDALVNDRQEHVDIQQIVNVESRSEAELQVDKGDSNLDVPKSFDSSVDRNMDSHASK******************F*NEMQQKEMEEEKLVHTNGIIGAHDHRAEDVEVEEGEISGHFEVDEVSIDMIIDNAVVSNEKK*************TDFP*************STSVCLNAVDHNASGGTVELQETVRNETQCKTKIFADGTATMAID***********************************VQ************GITTKDKLDS**************************RAE*****GVRRLKLPQNLKPKTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFVAKGFCNRGDNCLFSHKLPPKEQDPPTPSTCTPELKPSPPLYASNLLKPLNNNKVSHQNVDALSNHGKVSSFKNI***************************************************************************************************************************************N****I************KKTQPAITPRGL******************************************************************SAQGYYRSTS*SAQRALEFATKIEPKVKT**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAQMERSQVETTSFCFSPHRHLKSETYRALVQILSHCYDHSQISAAQDSRPGMCGSGELVGPNAAVVDNSLAEKDKAGDEDRWFGDAQIVLDEIQDILQVEENGNLLKQELAVCDGDYETGNFDEGLGQQRMLMDELEHILKGDVIFVHEEDALVNDRQEHVDIQQIVNVESRSEAELQVDKGDSNLDVPKSFDSSVDRNMDSHASKPxxxxxxxxxxxxxxxxxxxxxxxxxxxxEEKLVHTNGIIGAHDHRAEDVEVEEGEISGHFEVDEVSIDMIIDNAVVSNEKKEDEEQVSKDVTDKTDFPCNEKCGGTEKFSDSTSVCLNAVDHNASGGTVELQETVRNETQCKTKIFADGTATMAIDPDRYNSMPGVGRNKRKASRGEEGISSFSASLDDSTVQKEVVKQRVTQEQGITTKDKLDSGACNKRKxxxxxxxxxxxxxxxxxxxxxxxxxxLGVRRLKLPQNLKPKTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFVAKGFCNRGDNCLFSHKLPPKEQDPPTPSTCTPELKPSPPLYASNLLKPLNNNKVSHQNVDALSNHGKVSSFKNIEQSVAKSILKPPALAPKGISYLFLGKSSFLEASNLGQGISSPKKSDSSKFANQTAQIASDSVQSRDETPRRIPVATKGVNFLSFGNRSLEDSSGKKLANLFLNRENGAKTSLSNNFGLHETSSSSSCGENDAEVGNATTQIFSNSVQKSNDMPKKTQPAITPRGLNFLSTGKALANNTISNNQARLRSSAGDVINRSLEESPNTPNMSQNSSANPWSLPGSSFTLGHSLDHSAQGYYRSTSNSAQRALEFATKIEPKVKTNQSTVGTAVK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	879	2.2.26 [Sep-21-2011]
Q9LTS7	675	Zinc finger CCCH domain-c	yes	no	0.281	0.365	0.450	1e-44
Q657B3	698	Zinc finger CCCH domain-c	yes	no	0.226	0.285	0.454	2e-37
Q8BYK8	1177	Zinc finger CCCH domain-c	yes	no	0.087	0.065	0.4	4e-12
P61129	1189	Zinc finger CCCH domain-c	yes	no	0.087	0.064	0.4	4e-12
Q9UPT8	1303	Zinc finger CCCH domain-c	no	no	0.081	0.055	0.386	2e-11
Q6ZPZ3	1304	Zinc finger CCCH domain-c	no	no	0.081	0.055	0.386	2e-11
Q9JJ48	305	Zinc finger CCCH domain-c	no	no	0.081	0.236	0.386	6e-10
Q8N5P1	291	Zinc finger CCCH domain-c	no	no	0.089	0.271	0.337	3e-08
Q8IXZ2	948	Zinc finger CCCH domain-c	no	no	0.085	0.079	0.369	3e-08
A6NMK7	179	Putative cleavage and pol	no	no	0.105	0.519	0.362	2e-06

>sp|Q9LTS7|C3H65_ARATH Zinc finger CCCH domain-containing protein 65 OS=Arabidopsis thaliana GN=EMB1789 PE=2 SV=1

 Score =  182 bits (461), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 132/293 (45%), Positives = 166/293 (56%), Gaps = 46/293 (15%)

Query: 412 EQGITTKDKLDSGACNKRKRSALSKEKKAKKKQKERKKRAEKNRQLGVRRLKL-PQNLKP 470
           +Q  + + K+D G   K KRSA SK+ KA+K+ K R KRA++   LGV++LKL P   KP
Sbjct: 292 DQTFSNEAKMDPGTSIK-KRSAPSKDAKARKRAKARIKRAQERIALGVKKLKLKPVAPKP 350

Query: 471 KTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYP 530
           K +KYC HYLKGRC EGDKCKFSHDT+P TK +  CC+FA  SCMKGD+CPFDHDLSKYP
Sbjct: 351 KPIKYCRHYLKGRCHEGDKCKFSHDTIPETKCS-PCCYFATQSCMKGDDCPFDHDLSKYP 409

Query: 531 CENFVAKGFCNRGDNCLFSHKLPPKEQDPPTPSTCTPELKPSPPLYASNLLKPLNNNKVS 590
           C NF+ KGFC RGD+CLFSHK  P+                     AS+   P  N  VS
Sbjct: 410 CNNFITKGFCYRGDSCLFSHKGTPQS--------------------ASD--TPSANVTVS 447

Query: 591 HQNVDALSNHGKVSSFKNIEQSVAKSILKPPALAPK-GISYLFLGKSSFLEASNLGQGIS 649
              + A S     S  K  +QSV  +I K PA+  +   S  FL  SS     N      
Sbjct: 448 STKITAAS----FSPQKTKKQSVRDAIAKLPAIQARVSSSVAFLKPSSHSNQRN------ 497

Query: 650 SPKKSDSSKFANQTAQIASDSVQSRDETPRRIP-VATKGVNFLSFGNRSLEDS 701
               SD+S     +++I ++ V      P R P VA KG++FLS    S ED+
Sbjct: 498 ---SSDAS-----SSKI-NEHVTPPQVPPLRKPSVAPKGMSFLSLDKTSQEDT 541

Possesses RNA-binding and ribonuclease activities in vitro.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -

>sp|Q657B3|C3H7_ORYSJ Zinc finger CCCH domain-containing protein 7 OS=Oryza sativa subsp. japonica GN=Os01g0572100 PE=2 SV=1

 Score =  158 bits (399), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 99/218 (45%), Positives = 132/218 (60%), Gaps = 19/218 (8%)

Query: 427 NKRKRSALSKEKKAKKKQKERKKRAEKNRQLGVRRLKLPQNLKPKTVKYCHHYLKGRCQE 486
           N RKR+ L++E+KAKK + +R KRA +    GV+RLKL   +KPK VK CH YL G+CQ+
Sbjct: 387 NTRKRT-LTEERKAKKTKTKRIKRALQREAEGVKRLKLQPVIKPKVVKVCHFYLHGKCQQ 445

Query: 487 GDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFVAKGFCNRGDNC 546
           G+ CKFSHDT PLTKS K C H+AR SC+KGD+CP+DH+LSKYPC NF+  G C RGD C
Sbjct: 446 GNLCKFSHDTTPLTKS-KPCTHYARGSCLKGDDCPYDHELSKYPCHNFMENGMCIRGDKC 504

Query: 547 LFSHKLPPKEQDPPTPSTCTPELKPSPPLYASNLLKPLN-NNKVSHQNVDALSNHGKVSS 605
            FSH +P  E     PS  TP+ K S    AS++ +  N   + S Q    + +    +S
Sbjct: 505 KFSHVIPTAE----GPS--TPDAKKS---NASSVPEKANCQEQTSRQKTSTVYSGEPATS 555

Query: 606 FKNIEQSVAKSIL-------KPPALAPKGISYLFLGKS 636
                 S+ K++        K P   P+GI +L   K+
Sbjct: 556 VPIKHHSILKNLAGISGNAQKVPVRIPRGIQFLPFNKA 593

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8BYK8|ZC3H6_MOUSE Zinc finger CCCH domain-containing protein 6 OS=Mus musculus GN=Zc3h6 PE=2 SV=2

 Score = 74.3 bits (181), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 50/80 (62%), Gaps = 3/80 (3%)

Query: 471 KTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYP 530
           K  + C ++L+GRC +GD CKF+HD   L K  + C ++ +  C KG+NC + H  S++P
Sbjct: 271 KGKQICKYFLEGRCIKGDHCKFNHDAE-LEKKKEVCKYYLQGYCTKGENCIYMH--SEFP 327

Query: 531 CENFVAKGFCNRGDNCLFSH 550
           C+ + +   C +GD C FSH
Sbjct: 328 CKFYHSGAKCYQGDKCKFSH 347

Mus musculus (taxid: 10090)

>sp|P61129|ZC3H6_HUMAN Zinc finger CCCH domain-containing protein 6 OS=Homo sapiens GN=ZC3H6 PE=2 SV=2

 Score = 74.3 bits (181), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 50/80 (62%), Gaps = 3/80 (3%)

Query: 471 KTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYP 530
           K  + C ++L+GRC +GD+CKF HD   L K  + C  + +  C KG+NC + H+  ++P
Sbjct: 273 KGKQICKYFLEGRCIKGDQCKFDHDAE-LEKRKEICKFYLQGYCTKGENCIYMHN--EFP 329

Query: 531 CENFVAKGFCNRGDNCLFSH 550
           C+ + +   C +GDNC FSH
Sbjct: 330 CKFYHSGAKCYQGDNCKFSH 349

Homo sapiens (taxid: 9606)

>sp|Q9UPT8|ZC3H4_HUMAN Zinc finger CCCH domain-containing protein 4 OS=Homo sapiens GN=ZC3H4 PE=1 SV=3

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 3/75 (4%)

Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFV 535
           C ++++GRC  GD C FSHD + L K  + C  +    C + +NCP+ H    +PC+ + 
Sbjct: 396 CKYFVEGRCTWGDHCNFSHD-IELPKKRELCKFYITGFCARAENCPYMH--GDFPCKLYH 452

Query: 536 AKGFCNRGDNCLFSH 550
             G C  GD+C+FSH
Sbjct: 453 TTGNCINGDDCMFSH 467

Homo sapiens (taxid: 9606)

>sp|Q6ZPZ3|ZC3H4_MOUSE Zinc finger CCCH domain-containing protein 4 OS=Mus musculus GN=Zc3h4 PE=1 SV=2

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 3/75 (4%)

Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFV 535
           C ++++GRC  GD C FSHD + L K  + C  +    C + +NCP+ H    +PC+ + 
Sbjct: 395 CKYFVEGRCTWGDHCNFSHD-IELPKKRELCKFYITGFCARAENCPYMH--GDFPCKLYH 451

Query: 536 AKGFCNRGDNCLFSH 550
             G C  GD+C+FSH
Sbjct: 452 TTGNCINGDDCMFSH 466

Mus musculus (taxid: 10090)

>sp|Q9JJ48|ZC3H8_MOUSE Zinc finger CCCH domain-containing protein 8 OS=Mus musculus GN=Zc3h8 PE=1 SV=2

 Score = 67.0 bits (162), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 3/75 (4%)

Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFV 535
           C ++L+ +C +GD+CKF HD   + K  + C ++ +  C KG+NC + H  S+YPC+ + 
Sbjct: 211 CKYFLERKCIKGDQCKFDHD-AEIEKKKEMCKYYVQGYCTKGENCLYLH--SEYPCKFYH 267

Query: 536 AKGFCNRGDNCLFSH 550
               C +GD+C FSH
Sbjct: 268 TGTKCYQGDHCNFSH 282

Acts as a transcriptional repressor of the GATA3 promoter. Induces thymocyte apoptosis when overexpressed, which may indicate a role in regulation of thymocyte homeostasis (By similarity). Sequence-specific DNA-binding factor that binds to the 5'-AGGTCTC-3' sequence within the negative cis-acting element intronic regulatory region (IRR) of the GATA3 gene.

Mus musculus (taxid: 10090)

>sp|Q8N5P1|ZC3H8_HUMAN Zinc finger CCCH domain-containing protein 8 OS=Homo sapiens GN=ZC3H8 PE=1 SV=2

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 10/89 (11%)

Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFV 535
           C ++L+ +C +GD+CKF HD   + K  + C  + +  C +G+NC + H+  +YPC+ + 
Sbjct: 197 CKYFLERKCIKGDQCKFDHD-AEIEKKKEMCKFYVQGYCTRGENCLYLHN--EYPCKFYH 253

Query: 536 AKGFCNRGDNCLFSHKLPPKEQDPPTPST 564
               C +G+ C FSH        P TP T
Sbjct: 254 TGTKCYQGEYCKFSHA-------PLTPET 275

Acts as a transcriptional repressor of the GATA3 promoter. Sequence-specific DNA-binding factor that binds to the 5'-AGGTCTC-3' sequence within the negative cis-acting element intronic regulatory region (IRR) of the GATA3 gene (By similarity). Induces thymocyte apoptosis when overexpressed, which may indicate a role in regulation of thymocyte homeostasis.

Homo sapiens (taxid: 9606)

>sp|Q8IXZ2|ZC3H3_HUMAN Zinc finger CCCH domain-containing protein 3 OS=Homo sapiens GN=ZC3H3 PE=1 SV=3

 Score = 61.2 bits (147), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 9/84 (10%)

Query: 471 KTVKYCHHYLK-GRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGD-NCPFDHDLS- 527
           K  +YC +Y + GRC  G++C + HD     +    C  F R +C K D  CPF H +S 
Sbjct: 668 KRKEYCMYYNRFGRCNRGERCPYIHD----PEKVAVCTRFVRGTCKKTDGTCPFSHHVSK 723

Query: 528 -KYPCENFVAKGFCNRGDNCLFSH 550
            K P  ++  KG C+   NC +SH
Sbjct: 724 EKMPVCSYFLKGICS-NSNCPYSH 746

Homo sapiens (taxid: 9606)

>sp|A6NMK7|CPS4L_HUMAN Putative cleavage and polyadenylation specificity factor subunit 4-like protein OS=Homo sapiens GN=CPSF4L PE=2 SV=3

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/102 (36%), Positives = 50/102 (49%), Gaps = 9/102 (8%)

Query: 464 LP-QNLKPKTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPF 522
           LP Q +       C+ + KG C++G  C F HD     +    C H+ R  C KGD+C F
Sbjct: 28  LPFQGMDKSASAVCNFFTKGLCEKGKLCPFRHDR---GEKMVVCKHWLRGLCKKGDHCKF 84

Query: 523 DH--DLSKYPCENFVAK-GFCNRGDNCLFSHKLPP-KEQDPP 560
            H  DL++ P   F +K G C+  + C F H  P  K QD P
Sbjct: 85  LHQYDLTRMPECYFYSKFGDCSNKE-CSFLHVKPAFKSQDCP 125

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	879
255563196	932	conserved hypothetical protein [Ricinus	0.953	0.899	0.396	1e-139
224091270	928	predicted protein [Populus trichocarpa]	0.921	0.872	0.389	1e-125
297738650	675	unnamed protein product [Vitis vinifera]	0.690	0.899	0.421	1e-108
225444885	787	PREDICTED: uncharacterized protein LOC10	0.782	0.874	0.283	2e-60
357495183	928	Zinc finger CCCH domain-containing prote	0.466	0.441	0.363	1e-45
297796577	666	EMB1789 [Arabidopsis lyrata subsp. lyrat	0.286	0.378	0.440	8e-44
15241989	675	zinc finger CCCH domain-containing prote	0.281	0.365	0.450	1e-42
357135268	685	PREDICTED: zinc finger CCCH domain-conta	0.228	0.293	0.457	2e-41
326524087	676	predicted protein [Hordeum vulgare subsp	0.141	0.183	0.611	1e-39
75275745	698	RecName: Full=Zinc finger CCCH domain-co	0.226	0.285	0.454	1e-35

>gi|255563196|ref|XP_002522601.1| conserved hypothetical protein [Ricinus communis] gi|223538077|gb|EEF39688.1| conserved hypothetical protein [Ricinus communis]

 Score =  504 bits (1297), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 366/924 (39%), Positives = 523/924 (56%), Gaps = 86/924 (9%)

Query: 4   MERSQV--ETTSFCFSPHR---HLKSETYRALVQILSHCYDHSQI-----SAAQDSRPG- 52
           M++ Q+  + T   F PHR   HLKS+TY  LV+I+S CY+H  +     S +Q+  P  
Sbjct: 1   MDKPQILPQKTPIHF-PHRPKPHLKSQTYTNLVRIISECYNHPHLCKIPPSISQELIPAY 59

Query: 53  ------------MCGSGELVGP-----NAAVVDNSLA--EKDKA-GDEDRWFGDAQIVLD 92
                       +    ELV P     N +V  N+L+  E  KA G +D  F D Q V+ 
Sbjct: 60  DSNEPREASARQVLEQSELVTPDGTDHNYSVAQNNLSTDENVKAIGLQDGGFSDTQAVIY 119

Query: 93  EIQDILQVEENGNLLKQ-ELAVCDGDYETGNFDEGLGQ-QRMLMDELEHILKGDVIFVHE 150
           EI++I+ +EE+ N  K+ + +  DG   +G  D+  GQ Q++LMDELEH++KG    VH+
Sbjct: 120 EIENIMGIEEDENTFKEKDTSDNDGSGGSGVDDKEFGQLQQVLMDELEHVMKGSEDVVHD 179

Query: 151 EDALVNDRQEHVDIQQIVNVESRSEAELQVDKGDSNLDVPKSFDSSVDRNMDSHASKPAE 210
            +          +    +  E+R  A    DK  ++ +  +  + SVD++MD      +E
Sbjct: 180 NNC---------NFSTFLLDENRCGA----DKERASQNTCELIELSVDKSMDCKVLHISE 226

Query: 211 DSEERNSKLRTNSLEFENEMQQKEMEEEKLVHTNGIIGAHDHRAEDVEVEEGEISGHFEV 270
           ++EE+N   RTN LE  +EMQQKEME  K V  N    + +   ED ++EEGEI+G FEV
Sbjct: 227 NNEEKNPSPRTNLLEVSHEMQQKEMESGKSVCANDAADSSN-MIEDGKMEEGEIAGEFEV 285

Query: 271 DEVSIDMIIDNAVVSNEKKEDEEQVSKDVTDKTDFPCNEKCGGTEKFSDSTSVCLNAVDH 330
           DE   DM + ++ +  E+ +   Q+S++  DK  FP N+K     K  D  S+C+     
Sbjct: 286 DERLDDMPLKDSALPLEQNK---QLSEEFVDKNKFPSNDKRKSDRK--DPGSLCMTVDMM 340

Query: 331 NASGGTVELQETVRNETQCKTKIFADGTATMAIDPDRYNSMP----------GVG-RNKR 379
           N +       + VRN+  CK K+     + +A +P+ Y              G G + K+
Sbjct: 341 NVTDKKGIEAKDVRNQMACKRKVVVYEDSILAQEPNEYKKQKKGHETKERNKGSGDKEKK 400

Query: 380 KASRGEEGISSFSASLDDSTVQKEVVKQRVTQEQGITTKDKLDSGACNKRKRSALSKEKK 439
           K + G   I S     ++S +  + + Q  T  QGIT K+K DSG CNK+KR   S+EKK
Sbjct: 401 KGNIGCPMICS-----NNSALSSKKLDQGATGSQGITCKEKQDSGLCNKKKRGPPSEEKK 455

Query: 440 AKKKQKERKKRAEKNRQLGVRRLKLPQNLKPKTVKYCHHYLKGRCQEGDKCKFSHDTVPL 499
            KKK+K+RKKRA+KNR+LGV+RLKL    KPK V +C HY++GRCQEG+KCKFSHDT+PL
Sbjct: 456 EKKKEKKRKKRAQKNRELGVKRLKLRPVEKPKPVVFCRHYIRGRCQEGEKCKFSHDTIPL 515

Query: 500 TKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFVAKGFCNRGDNCLFSHKLPPKEQDP 559
           TKS K CCHFARNSC+KGD+CPFDH+LSKYPC N+ + G C+RGD+C+FSHKLP KE  P
Sbjct: 516 TKS-KPCCHFARNSCLKGDDCPFDHELSKYPCTNYASTGSCSRGDDCMFSHKLPLKEDLP 574

Query: 560 PTPSTCTPEL-KPSPPLYASNLLKPLNNNKVSHQNVDALSNHGKVSSFKNIEQSVAKSIL 618
              + CTP+L  PS P +ASN  K L++  +SH    A  + G   S K+ E++V K +L
Sbjct: 575 SASNVCTPDLNSPSLP-HASNSKKQLDSGGISHHTAKASPDTGGGLSRKDTERNVPKGVL 633

Query: 619 KPPALAPKGISYLFLGKSSFLEASNLGQGISSPKKSDSSKFANQTAQIASDSVQSRDETP 678
            P  L PKGIS+L  GKSS +E+S+     SS  +S+  K  NQ  Q A+ S ++ +E P
Sbjct: 634 GPHVLVPKGISFLSAGKSSVVESSHSTPRSSSLSRSEGFKVGNQRDQSAAGSNENSNEIP 693

Query: 679 RRIPVAT--KGVNFLSFGNRSLEDSSGKKLANLFLNRENGAKTSLSNNFGLHETSSSSSC 736
           +RIP A    G+NFLSFG   LE S  + L +     ++GAK+SLS+NF  H+ SS    
Sbjct: 694 KRIPAALIPNGINFLSFGRAPLEFSGTRNLTS-----DSGAKSSLSSNFDAHKQSSFPG- 747

Query: 737 GENDAEVGNATTQIFSNSVQKSNDMPKKTQPAITPRGLNFLSTGKALANNTISNNQARLR 796
             ND +VG  T++  SNS      M +KT+ A +    N LS  ++  N +I N Q  + 
Sbjct: 748 --NDVQVGKETSESVSNSKPWLKRMLQKTEFAASSLKSNSLSFNESSINASIGNAQDSMP 805

Query: 797 SSAGDVINRSLEESPNTPNMSQNSSANPWSLPGSSFTLGHSLDHSAQGYYRSTSNSAQRA 856
           SS+  +++R+L+ES   P+  Q+        P S    G S D       +S  NSAQ+A
Sbjct: 806 SSSATLVDRTLQESEILPDRRQDFRTISHGQPASPLGSGQSADCLGHARLKSAPNSAQKA 865

Query: 857 ----LEFATKIEPKVKTNQSTVGT 876
               L FA K+E ++K+ Q T+ T
Sbjct: 866 LISTLAFAAKVESQMKSKQPTIST 889

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091270|ref|XP_002309215.1| predicted protein [Populus trichocarpa] gi|222855191|gb|EEE92738.1| predicted protein [Populus trichocarpa]

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 365/938 (38%), Positives = 498/938 (53%), Gaps = 128/938 (13%)

Query: 10  ETTSFCFSPHR--HLKSETYRALVQILSH---CYDHSQISAAQDSRPGMCGSGELVGPNA 64
           ET  F FSP R  HLKS+TYR LV+ILSH   C                    ++   + 
Sbjct: 3   ETPLFTFSPLRKSHLKSQTYRTLVRILSHPQLCQFVPPPPGNGGDGGPHVLGNQVCSRHV 62

Query: 65  AVVDNSLAEKDKAGDEDRWFGDAQIVLDEIQDILQVEENGNLLKQELAVCDGDYETGNFD 124
            +   SL +K+    ++R F D Q V++E+++I+ +EE+ NL+  + A       TG  D
Sbjct: 63  ELCHESLLDKN---GQERGFSDTQAVINEVENIMGIEEDENLVIDQTAC-----GTGLQD 114

Query: 125 EGLGQ-QRMLMDELEHILKGDVIFVHEED----------------ALVNDRQEHVDIQQI 167
             L Q Q +L+DELEH++KG+V  V   +                A+ N++ EH +   +
Sbjct: 115 RDLIQAQHLLIDELEHLMKGNVELVCHNNSGPVTKRNRNAAGDVVAVSNNQDEHFERHPV 174

Query: 168 VNVESRSEAELQVDKGDSNLDVPKSFDSSVDRN--MDSHASKPAEDSEERNSKLRTNSLE 225
           V  E R   +LQ+D            + ++ +N  + S  SKP ++ EE +S  RTN LE
Sbjct: 175 VIKECRGVGQLQLD------------EETLCQNNKISSEVSKPVDNCEE-SSLSRTNGLE 221

Query: 226 FENEMQQKEMEEEKLVHTNGIIGAHDHRAEDVEVEEGEISGHFEVDEVSIDMIIDNAVVS 285
             NEMQQKE++ +K V  +  +G   +  ED E+EE E+SG FEVD+ S+DM  ++AV  
Sbjct: 222 VNNEMQQKEIQSDKSVCADATMG---YPPEDGEIEEREVSGEFEVDDGSVDMFSEDAVAP 278

Query: 286 NEKKEDEEQVSKDVTDKTDFPCNEKCGGTEKFSDSTSVCLNAVDHNASGGTVELQETVRN 345
            EKK DE+Q S+ + DK   P NEK    +K S  +S     V++      VE Q+   +
Sbjct: 279 QEKKVDEKQASEAIIDKNRLPINEKNEANKKHSWFSSSMAYTVENAKDRREVEAQQRFSS 338

Query: 346 ETQCKTKIFADGTATMAIDPDRYNSMPGVGRNKRKASRGEEGISSFSASLD---DSTVQK 402
           E  CK K+       +A +        GV   K+K   G    +  SA+ D   DS V++
Sbjct: 339 EMACKRKVVTYEDPILAEE--------GVWCKKQKKCHGVREQNDGSAAKDQKRDSRVKE 390

Query: 403 E-------------VV------------KQRVTQEQGITTKDKLDSGACNKRKRSALSKE 437
           +             VV             Q  +  QGI +K+K D+G CNK+KR   SKE
Sbjct: 391 QKKGNVANDGVGCPVVCPNNLASFTENSDQTASANQGIVSKEK-DAGLCNKKKRGPPSKE 449

Query: 438 KKAKKKQKERKKRAEKNRQLGVRRLKLPQNLKPKTVKYCHHYLKGRCQEGDKCKFSHDTV 497
           KKAKKK+KERKKRAEKNRQLGV+R+KL   L  K V  C H+LKGRC+EG KCKFSHD +
Sbjct: 450 KKAKKKEKERKKRAEKNRQLGVKRMKLLPVLNQKPVSPCRHFLKGRCREGQKCKFSHDAI 509

Query: 498 PLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFVAKGFCNRGDNCLFSHKLPPKEQ 557
           PLTKS + C HFAR+ CMKGDNCP+DH LSKYPC N+V+KG+C RGD+C+FSHK     +
Sbjct: 510 PLTKS-EPCHHFARHKCMKGDNCPYDHQLSKYPCTNYVSKGYCIRGDSCMFSHK-----E 563

Query: 558 DPPTPS----TCTPELKPSPPLYASNLLKPLNNNKVSHQNVDALSNH-GKVSSFKNIEQS 612
           D  + S     CTP++KP      SN  + L+ +  S+Q   AL +  G +S  +    +
Sbjct: 564 DLASTSNVSNVCTPKVKPPSLPSTSNSKRQLDISGTSNQTAKALPDSTGVISDDRRAALN 623

Query: 613 VAKSILKPPALAPKGISYLFLGKSSFLEASNLGQGISSPKKSDSS-------KFANQTAQ 665
           VAK++   PAL PKG+S+L  GK S +E        SSPK S  S       K  NQ  Q
Sbjct: 624 VAKTVQNLPALVPKGLSFLSGGKKSMVE--------SSPKTSSPSLKSNVFVKVGNQIDQ 675

Query: 666 IASDSVQSRDETPRRIP--VATKGVNFLSFGNRSLED-SSGKKLANLFLNRENGAKTSLS 722
            AS +VQS +E PR+IP  VA KG+NFLSFG   L+  SS  KL +L  N+ NG     S
Sbjct: 676 CASVTVQSCNEIPRKIPSVVAPKGINFLSFGKAPLDKCSSTMKLKSLAFNQGNGVNLFSS 735

Query: 723 NNFGLHETSSSSSCGENDAEVGNATTQIFSN-SVQKSNDMPKKTQPAITPRGLNFLSTGK 781
            NF +HE + SSS  +N   VG  T Q  SN +    N M +KT+P          +   
Sbjct: 736 KNFAVHEEACSSSNKDNSVLVGKETHQSVSNMAAHGLNKMLQKTEPT---------AFQD 786

Query: 782 ALANNTISNNQARLRSSAGDVINRSLEESPNTPNMSQNSSANPWSLPGSSFTLGHSLDHS 841
           A A++   N QA L  S+G  ++ S++ES    N     SA    LP S    G S D  
Sbjct: 787 ASADSFRRNQQASLPLSSGSGVHASVQESKIASNKHVELSALQGRLPASPLGSGQSSDQL 846

Query: 842 AQGYYRSTSNSAQRA----LEFATKIEPKVKTNQSTVG 875
           A    ++   SAQ+A    L FATK+E  +K NQST G
Sbjct: 847 AHACLKNKPISAQKALMSTLAFATKVESLMKMNQSTGG 884

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738650|emb|CBI27895.3| unnamed protein product [Vitis vinifera]

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 266/631 (42%), Positives = 369/631 (58%), Gaps = 24/631 (3%)

Query: 256 DVEVEEGEISGHFEVDEVSIDMIIDNAVVSNEKKEDEEQVSKDVTDKTDFPCNEKCGGTE 315
           D ++EEGEISG F  D    D+ I++ V S  KK +EE +S+++ +K +F CNE+    +
Sbjct: 21  DGDIEEGEISGDFMGD----DLSIEDDVASEMKKGEEESISENIINKEEFTCNEQKRVND 76

Query: 316 KFSDSTSVCLNAVDHNASGGTVELQETVRNETQCKTKIFADG-TATMAIDPDRYNSMPGV 374
           K S+STS  +++VD    G  VE+ E+ RN+ +CK+++   G T   A   D  + M   
Sbjct: 77  KDSESTSKIVSSVDKGDHG--VEVTESNRNQMRCKSQMGQGGRTINGAKKTDGSDCMREA 134

Query: 375 GRNKRKASRGEEGISSFSASLDDSTVQKEVVKQRVTQEQGITTKDKLDSGA-CNKRKRSA 433
              K K SR +    + +  LDD     E +     +   IT+   +  GA   K+++  
Sbjct: 135 ETTKMKGSRAKVDFDNPANFLDDLVFHGESLADNAAENLSITS---VKEGARVTKKRKRV 191

Query: 434 LSKEKKAKKKQKERKKRAEKNRQLGVRRLKLPQNLKPKTVKYCHHYLKGRCQEGDKCKFS 493
           LSKEKK KKKQKERKKRAEKN++LGV+RL+L    KPKTV YC HYLKGRC EGD C+FS
Sbjct: 192 LSKEKKVKKKQKERKKRAEKNKELGVKRLRLLPVSKPKTVTYCRHYLKGRCHEGDHCRFS 251

Query: 494 HDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFVAKGFCNRGDNCLFSHKLP 553
           HDT+PLTKS+  CCHFAR +CMKGD+CPFDH LS YPC N+V+KGFC+RGD+CLFSHK+P
Sbjct: 252 HDTIPLTKSS-PCCHFARGTCMKGDDCPFDHQLSNYPCNNYVSKGFCSRGDDCLFSHKMP 310

Query: 554 PKEQDPPTPSTCTPELKPSPPLYASNLLKPLNNNKVSHQNVDALSNHGKVSSFKNIEQSV 613
            KE  P   + C P  +P P L + +  K L+ N  SHQN ++LS+   +    N+E+ V
Sbjct: 311 LKESSPTAVNVCKPVSEP-PSLPSKSYSKKLDMNGTSHQNGNSLSHSVGIFPQSNMEKKV 369

Query: 614 AKSILKPPALAPKGISYLFLGKSSFLEASNLGQGISSPKKSDSSKFANQTAQIASDSVQS 673
           A+ +LKPP  A +GI+ L  GKS    +  L Q  SSP   +  +   Q  Q     VQ+
Sbjct: 370 AEIVLKPPEQASRGINSLSFGKSPMDYSGKLKQIGSSPTMDEGVEVDKQKNQ---GEVQN 426

Query: 674 RDETPRRIPVAT--KGVNFLSFGNRSLEDSSGKKLANLFLNRENGAKTSLSNNFGLHETS 731
            +E  +R PV    +G+NFLSFG   L DSS K+LA    NRE+G K     +   ++  
Sbjct: 427 MNEKAKRTPVTVPPRGINFLSFGKAPLNDSSVKELAGSPSNREDGNKILPLGDSNKYKQV 486

Query: 732 SSSSCGENDAEVGNATTQIFSNSVQKSNDMPKKTQPAITPRGLNFLSTGKALANNTISNN 791
            SSS  + +  V +   Q  + ++ K N+M    QPA  P G+NFLS GKA  ++  S  
Sbjct: 487 GSSSARDGNINVSSQLNQSATETIHKLNEMSNGRQPAAAPPGINFLSFGKAPLDDLSSKR 546

Query: 792 QARLRSSAGDVINRSLEESPNTPNMSQNSSANPWSLPGSSFTLGHSLDHSAQGYYRSTSN 851
           Q++  S + +VI   ++E     +  QNSSA PW LP S  T     D    G+ + TS+
Sbjct: 547 QSKSPSQSNNVIEIPIQERQRASSGFQNSSAVPWGLPASPIT--SVSDQLVHGHNKDTSS 604

Query: 852 SAQRA----LEFATKIEPKVKTNQSTVGTAV 878
           SAQ+A    L FA K E  +K ++S V  +V
Sbjct: 605 SAQKALLSTLAFAAKYESALKIDRSIVAPSV 635

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444885|ref|XP_002279436.1| PREDICTED: uncharacterized protein LOC100268102 [Vitis vinifera]

 Score =  241 bits (614), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 235/829 (28%), Positives = 377/829 (45%), Gaps = 141/829 (17%)

Query: 78  GDEDRWFGDAQIVLDEIQDILQVEENGNLLKQELAVCDGDYETGNFDEGLGQQRMLMDEL 137
           G ++    + Q+V+DE++ I++ +EN +++  +           +FD+    Q     EL
Sbjct: 32  GFQEVGLSNVQVVMDELEQIMRGKENKDVVVGK----SNSSSILSFDK---DQNNTSREL 84

Query: 138 EHIL-----KGDVI---------------FVHEEDALVNDRQEHVDIQQIVNVESRSEAE 177
           EH++     KGDV+                    DA +N+ ++  ++Q ++  E     +
Sbjct: 85  EHLMEKKEDKGDVVGKSINLLTLALNKNQSADHVDACINNHEDRFNLQHVIMEEDEDGEQ 144

Query: 178 LQVDKGDSNLDVPKSFDSSVDRNMDSHASKPAEDSEERNSKLRTNSLEFEN-EMQQKEME 236
           ++     +N+   +  + S+D N++   SK  E++ +++S  +  +LE    ++QQKEME
Sbjct: 145 VKASDEQNNVVNLEGLNLSIDDNLNGEDSKADENNNKKSSPFKGIALEDPGLKVQQKEME 204

Query: 237 EEKLVHTNGIIGAHDHRAEDVEVEEGEISGHFEVDEVSIDMIIDNAVVSNEKKEDEEQVS 296
            EK V       +  +   D ++EEGEISG F  D++SI+    + V S  KK +EE +S
Sbjct: 205 LEKSVSPR-TASSPFYVTVDGDIEEGEISGDFMGDDLSIE----DDVASEMKKGEEESIS 259

Query: 297 KDVTDKTDFPCNEKCGGTEKFSDSTSVCLNAVDHNASGGTVELQETVRNETQCKTKIFAD 356
           +++ +K +F CNE+    +K S+STS  +++VD    G  VE+ E+ RN+ +CK+++   
Sbjct: 260 ENIINKEEFTCNEQKRVNDKDSESTSKIVSSVDKGDHG--VEVTESNRNQMRCKSQMGQG 317

Query: 357 G-TATMAIDPDRYNSMPGVGRNKRKASRGEEGISSFSASLDDSTVQKEVVKQRVTQEQGI 415
           G T   A   D  + M      K K SR +    + +  LDD     E +     +   I
Sbjct: 318 GRTINGAKKTDGSDCMREAETTKMKGSRAKVDFDNPANFLDDLVFHGESLADNAAENLSI 377

Query: 416 TTKDKLDSGACNKRKRSALSKEKKAKKKQKERKKRAEKNRQLGVRRLKLPQNLKPKTVKY 475
           T+   +  GA   +KR                                          K 
Sbjct: 378 TS---VKEGARVTKKR------------------------------------------KR 392

Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFV 535
                K   ++GD C+FSHDT+PLTKS+                                
Sbjct: 393 VLSKEKKVKKKGDHCRFSHDTIPLTKSS-------------------------------- 420

Query: 536 AKGFCNRGDNCLFSHKLPPKEQDPPTPSTCTPELKPSPPLYASNLLKPLNNNKVSHQNVD 595
                           +P KE  P   + C P  +P P L + +  K L+ N  SHQN +
Sbjct: 421 ----------------MPLKESSPTAVNVCKPVSEP-PSLPSKSYSKKLDMNGTSHQNGN 463

Query: 596 ALSNHGKVSSFKNIEQSVAKSILKPPALAPKGISYLFLGKSSFLEASNLGQGISSPKKSD 655
           +LS+   +    N+E+ VA+ +LKPP  A +GI+ L  GKS    +  L Q  SSP   +
Sbjct: 464 SLSHSVGIFPQSNMEKKVAEIVLKPPEQASRGINSLSFGKSPMDYSGKLKQIGSSPTMDE 523

Query: 656 SSKFANQTAQIASDSVQSRDETPRRIPVAT--KGVNFLSFGNRSLEDSSGKKLANLFLNR 713
             +   Q  Q     VQ+ +E  +R PV    +G+NFLSFG   L DSS K+LA    NR
Sbjct: 524 GVEVDKQKNQ---GEVQNMNEKAKRTPVTVPPRGINFLSFGKAPLNDSSVKELAGSPSNR 580

Query: 714 ENGAKTSLSNNFGLHETSSSSSCGENDAEVGNATTQIFSNSVQKSNDMPKKTQPAITPRG 773
           E+G K     +   ++   SSS  + +  V +   Q  + ++ K N+M    QPA  P G
Sbjct: 581 EDGNKILPLGDSNKYKQVGSSSARDGNINVSSQLNQSATETIHKLNEMSNGRQPAAAPPG 640

Query: 774 LNFLSTGKALANNTISNNQARLRSSAGDVINRSLEESPNTPNMSQNSSANPWSLPGSSFT 833
           +NFLS GKA  ++  S  Q++  S + +VI   ++E     +  QNSSA PW LP S  T
Sbjct: 641 INFLSFGKAPLDDLSSKRQSKSPSQSNNVIEIPIQERQRASSGFQNSSAVPWGLPASPIT 700

Query: 834 LGHSLDHSAQGYYRSTSNSAQRA----LEFATKIEPKVKTNQSTVGTAV 878
                D    G+ + TS+SAQ+A    L FA K E  +K ++S V  +V
Sbjct: 701 --SVSDQLVHGHNKDTSSSAQKALLSTLAFAAKYESALKIDRSIVAPSV 747

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357495183|ref|XP_003617880.1| Zinc finger CCCH domain-containing protein [Medicago truncatula] gi|355519215|gb|AET00839.1| Zinc finger CCCH domain-containing protein [Medicago truncatula]

 Score =  191 bits (486), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 162/446 (36%), Positives = 218/446 (48%), Gaps = 36/446 (8%)

Query: 430 KRSALSKEKKAKKKQKERKKRAEKNRQLGVRRLKLPQNLKPKTVKYCHHYLKGRCQEGDK 489
           KR   S+EKK +K++K RK +AEKNR+ G +R K     KPK  K C HY+KGRC EGD+
Sbjct: 460 KRGPGSQEKKTRKRKKYRKNKAEKNREPGGKRPKFIPEQKPKP-KQCRHYMKGRCHEGDQ 518

Query: 490 CKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFVAKGFCNRGDNCLFS 549
           C FSHD +PLTKS   C H+A  SCMKG++CP+DH LSKYPC NFV+KG C RG  C+FS
Sbjct: 519 CNFSHDAIPLTKSV-PCAHYACGSCMKGNDCPYDHQLSKYPCSNFVSKGSCYRG-RCMFS 576

Query: 550 HKLPPKEQDPPTPS-TCTPELKPSPPLYASNLLKPLNNNKV-SHQNVDALSNHGKVSSFK 607
           H++    QD PTP+  C PELK       +N   PLNN+   S Q  +  SN   + S  
Sbjct: 577 HQV-QTSQDIPTPTNACKPELKSPLSSGNTNFSTPLNNHGTGSVQQTN--SNSKGIYSHT 633

Query: 608 NIEQSVAKSILKPPALAPKGISYLFLGKSSFLEASNLGQGISSPKKSDSSKFANQTAQIA 667
           N+E  V       P  APKGI ++ +     L  +   Q    P K +            
Sbjct: 634 NVEHKVTDVSQTKPTSAPKGIRFINVAN---LSPTTPKQDTVQPNKGNLVH-----GGTC 685

Query: 668 SDSVQSRDETPRRIP-VATKGVNFLSFGNRSLEDSSGKKLANLFLNRENGAKTSLSNNFG 726
           +D  Q+  E  ++IP V  KGVNFLSFG  S+      KL+     +E   K   S NFG
Sbjct: 686 ADKGQNTVEISKKIPAVMPKGVNFLSFGKGSV---CSFKLSIQSTAQEMILKLPQSVNFG 742

Query: 727 LHETSSSSSCGENDAEVGNATTQIFSNSVQKSNDMPKKTQPAITPRGLNFLSTGKALANN 786
           L E S S    ++  +  + T Q    +   S+++  K Q         FL         
Sbjct: 743 LSEHSVSLLNKDDHGKAIDITAQNLPQTALFSHEISDKNQSMAERMKSRFLEKDS----- 797

Query: 787 TISNNQARLRSSAGDVINRSLEESPNTPNMSQNSSANPWSLPGSSFTLGHSLDHSAQGYY 846
             +++  R  S       +S +E     + SQ S+    +L  S F    S +    G  
Sbjct: 798 --TDDSVRDHSHC-----KSAQEVNKASDNSQASTVTSATLLASPFVSLQSSEGLVSGCP 850

Query: 847 RSTSNSAQRA----LEFATKIEPKVK 868
           +  SN  QRA    L FA + E  +K
Sbjct: 851 KQASNIGQRALISTLAFAAEHESNIK 876

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297796577|ref|XP_002866173.1| EMB1789 [Arabidopsis lyrata subsp. lyrata] gi|297312008|gb|EFH42432.1| EMB1789 [Arabidopsis lyrata subsp. lyrata]

 Score =  185 bits (470), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 136/309 (44%), Positives = 183/309 (59%), Gaps = 57/309 (18%)

Query: 420 KLDSGACNKRKRSALSKEKKAKKKQKERKKRAEKNRQLGVRRLKL-PQNLKPKTVKYCHH 478
           ++D G   K KRSA SK+ KA+K+ K RKKRA++   LGV++LKL P   KPK +KYC H
Sbjct: 290 EMDPGTSIK-KRSAPSKDAKARKRAKARKKRAKERIALGVKKLKLKPVAPKPKPIKYCRH 348

Query: 479 YLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFVAKG 538
           YLKGRC EGDKCKFSHDT P TKS+ ACC+FA  SCMKGD+CPFDHDLSKYPC NF+ KG
Sbjct: 349 YLKGRCHEGDKCKFSHDTTPETKSS-ACCYFATQSCMKGDDCPFDHDLSKYPCNNFIIKG 407

Query: 539 FCNRGDNCLFSHK-LPPKEQDPP-----------TPSTCTPE----------LKPSPPLY 576
           FC+RGD+CLFSHK  P    D P           T ++ +P+          +   P + 
Sbjct: 408 FCHRGDSCLFSHKGTPQSASDTPSANVTASSTNITAASFSPQKTNKQSVREAIAKLPGIQ 467

Query: 577 AS-----NLLKPLNNNKVSHQNV-DALSNHGKVSSFKNIEQSVAKSILKPPALAPKGISY 630
           A        LKPL+ +  +H+N  DALS   K++      Q +    L+ P++APKG+S+
Sbjct: 468 ARVSSSVGFLKPLSQS--NHRNPSDALS--PKINEPVTHPQVLP---LRKPSVAPKGMSF 520

Query: 631 LFLGKSSFLEASNLGQGISSPKKSDSSKFANQT---AQIASDSVQSRDETPRRIP-VATK 686
           L L K+   +   +    +S + +D+S   NQT   +Q+ S            +P V  K
Sbjct: 521 LSLDKT--FQEDTVKVSPASKRNTDNSD--NQTLKQSQLGSS-----------LPLVPPK 565

Query: 687 GVNFLSFGN 695
           G++FLSF +
Sbjct: 566 GISFLSFAS 574

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241989|ref|NP_200503.1| zinc finger CCCH domain-containing protein 65 [Arabidopsis thaliana] gi|75264233|sp|Q9LTS7.1|C3H65_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 65; Short=AtC3H65; AltName: Full=Protein EMBRYO DEFECTIVE 1789 gi|8777433|dbj|BAA97023.1| unnamed protein product [Arabidopsis thaliana] gi|332009441|gb|AED96824.1| zinc finger CCCH domain-containing protein 65 [Arabidopsis thaliana]

 Score =  182 bits (461), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 132/293 (45%), Positives = 166/293 (56%), Gaps = 46/293 (15%)

Query: 412 EQGITTKDKLDSGACNKRKRSALSKEKKAKKKQKERKKRAEKNRQLGVRRLKL-PQNLKP 470
           +Q  + + K+D G   K KRSA SK+ KA+K+ K R KRA++   LGV++LKL P   KP
Sbjct: 292 DQTFSNEAKMDPGTSIK-KRSAPSKDAKARKRAKARIKRAQERIALGVKKLKLKPVAPKP 350

Query: 471 KTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYP 530
           K +KYC HYLKGRC EGDKCKFSHDT+P TK +  CC+FA  SCMKGD+CPFDHDLSKYP
Sbjct: 351 KPIKYCRHYLKGRCHEGDKCKFSHDTIPETKCS-PCCYFATQSCMKGDDCPFDHDLSKYP 409

Query: 531 CENFVAKGFCNRGDNCLFSHKLPPKEQDPPTPSTCTPELKPSPPLYASNLLKPLNNNKVS 590
           C NF+ KGFC RGD+CLFSHK  P+                     AS+   P  N  VS
Sbjct: 410 CNNFITKGFCYRGDSCLFSHKGTPQS--------------------ASD--TPSANVTVS 447

Query: 591 HQNVDALSNHGKVSSFKNIEQSVAKSILKPPALAPK-GISYLFLGKSSFLEASNLGQGIS 649
              + A S     S  K  +QSV  +I K PA+  +   S  FL  SS     N      
Sbjct: 448 STKITAAS----FSPQKTKKQSVRDAIAKLPAIQARVSSSVAFLKPSSHSNQRN------ 497

Query: 650 SPKKSDSSKFANQTAQIASDSVQSRDETPRRIP-VATKGVNFLSFGNRSLEDS 701
               SD+S     +++I ++ V      P R P VA KG++FLS    S ED+
Sbjct: 498 ---SSDAS-----SSKI-NEHVTPPQVPPLRKPSVAPKGMSFLSLDKTSQEDT 541

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357135268|ref|XP_003569232.1| PREDICTED: zinc finger CCCH domain-containing protein 7-like [Brachypodium distachyon]

 Score =  177 bits (450), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 98/214 (45%), Positives = 124/214 (57%), Gaps = 13/214 (6%)

Query: 427 NKRKRSALSKEKKAKKKQKERKKRAEKNRQLGVRRLKLPQNLKPKTVKYCHHYLKGRCQE 486
            KRKR   ++E+KAKK + +R KRA +    GV+RLKL   +KPK V+YCH YL G+CQ+
Sbjct: 385 GKRKR-IFTEERKAKKTKNKRVKRALQREADGVKRLKLAPIIKPKVVRYCHFYLHGKCQQ 443

Query: 487 GDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFVAKGFCNRGDNC 546
           G+ CKFSHDT PLTKS K C HFAR SC+KGD+CP+DH+LSKYPC NF+  G C RGD C
Sbjct: 444 GNVCKFSHDTTPLTKS-KPCTHFARGSCLKGDDCPYDHELSKYPCHNFLGNGMCLRGDKC 502

Query: 547 LFSHKLPPKEQDPPTPSTCTPELKPSPPLYASNLLKPLNNN---KVS--HQNVDALSNHG 601
            FSH  P  +       + T + K S     S  L     N   K+S  H      S   
Sbjct: 503 KFSHVAPTADD------SSTKDAKKSDASLVSEKLTSKEQNSSQKISTVHDGEPVASAPT 556

Query: 602 KVSSFKNIEQSVAKSILKPPALAPKGISYLFLGK 635
           K  S      S++K+  K  A  PKG+ +L   K
Sbjct: 557 KHYSILKTLGSISKNAQKASAHMPKGVQFLAFSK 590

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326524087|dbj|BAJ97054.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 77/126 (61%), Positives = 95/126 (75%), Gaps = 2/126 (1%)

Query: 428 KRKRSALSKEKKAKKKQKERKKRAEKNRQLGVRRLKLPQNLKPKTVKYCHHYLKGRCQEG 487
           KRKR  L++E+KAKK + +R KRA++    GV++LKL   +KPK VK+CH Y+ G+CQ G
Sbjct: 368 KRKR-LLTEERKAKKTKNKRVKRAQQRIADGVKKLKLAPVIKPKPVKFCHFYMHGKCQLG 426

Query: 488 DKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFVAKGFCNRGDNCL 547
           + CKFSHDT PLTKS K C HFAR SC+KGD CP+DH+LSKYPC NFV  G C RGD C 
Sbjct: 427 NACKFSHDTTPLTKS-KPCTHFARGSCLKGDECPYDHELSKYPCHNFVENGMCFRGDKCK 485

Query: 548 FSHKLP 553
           FSH +P
Sbjct: 486 FSHVVP 491

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75275745|sp|Q657B3.1|C3H7_ORYSJ RecName: Full=Zinc finger CCCH domain-containing protein 7; Short=OsC3H7 gi|52076312|dbj|BAD45097.1| zinc finger (CCCH-type) protein-like [Oryza sativa Japonica Group]

 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 99/218 (45%), Positives = 132/218 (60%), Gaps = 19/218 (8%)

Query: 427 NKRKRSALSKEKKAKKKQKERKKRAEKNRQLGVRRLKLPQNLKPKTVKYCHHYLKGRCQE 486
           N RKR+ L++E+KAKK + +R KRA +    GV+RLKL   +KPK VK CH YL G+CQ+
Sbjct: 387 NTRKRT-LTEERKAKKTKTKRIKRALQREAEGVKRLKLQPVIKPKVVKVCHFYLHGKCQQ 445

Query: 487 GDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFVAKGFCNRGDNC 546
           G+ CKFSHDT PLTKS K C H+AR SC+KGD+CP+DH+LSKYPC NF+  G C RGD C
Sbjct: 446 GNLCKFSHDTTPLTKS-KPCTHYARGSCLKGDDCPYDHELSKYPCHNFMENGMCIRGDKC 504

Query: 547 LFSHKLPPKEQDPPTPSTCTPELKPSPPLYASNLLKPLN-NNKVSHQNVDALSNHGKVSS 605
            FSH +P  E     PS  TP+ K S    AS++ +  N   + S Q    + +    +S
Sbjct: 505 KFSHVIPTAE----GPS--TPDAKKS---NASSVPEKANCQEQTSRQKTSTVYSGEPATS 555

Query: 606 FKNIEQSVAKSIL-------KPPALAPKGISYLFLGKS 636
                 S+ K++        K P   P+GI +L   K+
Sbjct: 556 VPIKHHSILKNLAGISGNAQKVPVRIPRGIQFLPFNKA 593

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	879
TAIR|locus:2164660	675	EMB1789 "embryo defective 1789	0.538	0.700	0.303	2.3e-40
UNIPROTKB|F1SUA3	1185	ZC3H6 "Uncharacterized protein	0.094	0.070	0.395	3.2e-11
MGI|MGI:1926001	1177	Zc3h6 "zinc finger CCCH type c	0.094	0.070	0.395	3.9e-11
UNIPROTKB|P61129	1189	ZC3H6 "Zinc finger CCCH domain	0.094	0.069	0.395	6.6e-11
DICTYBASE|DDB_G0277543	1657	DDB_G0277543 "CCCH-type zinc f	0.103	0.054	0.375	8.8e-11
MGI|MGI:1930128	305	Zc3h8 "zinc finger CCCH type c	0.087	0.252	0.375	7.4e-10
UNIPROTKB|F1PWF3	1166	ZC3H6 "Uncharacterized protein	0.094	0.071	0.395	1.1e-09
RGD|1310458	305	Zc3h8 "zinc finger CCCH type c	0.087	0.252	0.362	1.6e-09
UNIPROTKB|Q17QY2	303	ZC3H8 "Zinc finger CCCH-type c	0.106	0.310	0.319	4.6e-09
UNIPROTKB|A6NMK7	179	CPSF4L "Putative cleavage and	0.105	0.519	0.362	7.8e-09

TAIR|locus:2164660 EMB1789 "embryo defective 1789" [Arabidopsis thaliana (taxid:3702)]

 Score = 454 (164.9 bits), Expect = 2.3e-40, P = 2.3e-40
 Identities = 162/534 (30%), Positives = 230/534 (43%)

Query:   255 EDVEVEEGEISGH-FEVDEVSIDMIIDNAVVSNEKKEDEEQVSKDVTDKTDFPCNEKCGG 313
             E ++V + +I  +  E   ++  + +D   V +EKK +E   S +  +       E C G
Sbjct:   144 EALDVNDYDIVQNVLEKPNIATQVQVDP--VESEKKAEEVPKSVESNEVISSGVLEACNG 201

Query:   314 T-------EKFSDSTSVCLNAVDHNASGGTVELQETVRNETQCKTKIFADGTATMAIDPD 366
             T       EK  D++ V +++V     G  VE  E   ++      +  +   T+    +
Sbjct:   202 TVQREMELEKPVDNSPVLVDSVSRIVGGDDVEEGEISGDDND---DMLVEDDETVERHEE 258

Query:   367 RYNSMPGVGRNKRKASRGEEGISSFSASLDDSTVQKEVVKQRVTQEQGITTKDKLDSGAC 426
                S  G G N    S    G+   +    D+  +K  + Q  + E       K+D G  
Sbjct:   259 YQVSQDGTG-NSHLTSHKSFGVEVMNV---DNQAKK--IDQTFSNEA------KMDPGT- 305

Query:   427 NXXXXXXXXXXXXXXXXXXXXXXXXXXNRQLGVRRLKL-PQNLKPKTVKYCHHYLKGRCQ 485
             +                             LGV++LKL P   KPK +KYC HYLKGRC 
Sbjct:   306 SIKKRSAPSKDAKARKRAKARIKRAQERIALGVKKLKLKPVAPKPKPIKYCRHYLKGRCH 365

Query:   486 EGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFVAKGFCNRGDN 545
             EGDKCKFSHDT+P TK +  CC+FA  SCMKGD+CPFDHDLSKYPC NF+ KGFC RGD+
Sbjct:   366 EGDKCKFSHDTIPETKCSP-CCYFATQSCMKGDDCPFDHDLSKYPCNNFITKGFCYRGDS 424

Query:   546 CLFSHK-LPPKEQDPPTPSTCTPELKPSPPLYASNLLK-----------PLNNNKVSHQN 593
             CLFSHK  P    D P+ +      K +   ++    K           P    +VS  +
Sbjct:   425 CLFSHKGTPQSASDTPSANVTVSSTKITAASFSPQKTKKQSVRDAIAKLPAIQARVS-SS 483

Query:   594 VDAL--SNHGKVSSFKNIEQSVAKSILKPPALAPKGISYLFLGKSSFLEASNLGQGISSP 651
             V  L  S+H    +  +   S     + PP + P     +     SFL      Q   + 
Sbjct:   484 VAFLKPSSHSNQRNSSDASSSKINEHVTPPQVPPLRKPSVAPKGMSFLSLDKTSQE-DTV 542

Query:   652 KKSDSSK--FANQTAQIASDSVQSRDETPRRIPVATKGVNFLSFGNRSLEDSSGKKLANL 709
             K S +SK    N  +Q    S Q     P   P   KG++FLSF       S  +K  N 
Sbjct:   543 KASSASKPNTDNSDSQTLKQSQQG-SFLPLGPP---KGISFLSFA------SEEQKTLNR 592

Query:   710 FLNRENGAKTSLSNNFGLHETSSSSSCGENDAEVGNATTQIFSN----SVQKSN 759
                +   +K +L      H  SS  S  +  AE  +A  +  +N    +V KSN
Sbjct:   593 EPQKPASSK-NLKTTPSSHIQSSLLSAMKLAAEFESAKVERGNNDPTEAVNKSN 645

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

UNIPROTKB|F1SUA3 ZC3H6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 183 (69.5 bits), Expect = 3.2e-11, Sum P(3) = 3.2e-11
 Identities = 34/86 (39%), Positives = 52/86 (60%)

Query:   471 KTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYP 530
             K  + C ++L+GRC +GD+CKF HD   L K  + C  + +  C KG+NC + H+  ++P
Sbjct:   273 KGKQICKYFLEGRCIKGDQCKFDHDA-ELEKRKEICKFYLQGYCTKGENCIYMHN--EFP 329

Query:   531 CENFVAKGFCNRGDNCLFSHKLPPKE 556
             C+ + +   C +GDNC FSH    KE
Sbjct:   330 CKFYHSGAKCYQGDNCKFSHDDLTKE 355

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

MGI|MGI:1926001 Zc3h6 "zinc finger CCCH type containing 6" [Mus musculus (taxid:10090)]

 Score = 184 (69.8 bits), Expect = 3.9e-11, Sum P(3) = 3.9e-11
 Identities = 34/86 (39%), Positives = 52/86 (60%)

Query:   471 KTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYP 530
             K  + C ++L+GRC +GD CKF+HD   L K  + C ++ +  C KG+NC + H  S++P
Sbjct:   271 KGKQICKYFLEGRCIKGDHCKFNHDA-ELEKKKEVCKYYLQGYCTKGENCIYMH--SEFP 327

Query:   531 CENFVAKGFCNRGDNCLFSHKLPPKE 556
             C+ + +   C +GD C FSH    KE
Sbjct:   328 CKFYHSGAKCYQGDKCKFSHDDLTKE 353

GO:0003674 "molecular_function" evidence=ND

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|P61129 ZC3H6 "Zinc finger CCCH domain-containing protein 6" [Homo sapiens (taxid:9606)]

 Score = 183 (69.5 bits), Expect = 6.6e-11, Sum P(3) = 6.6e-11
 Identities = 34/86 (39%), Positives = 52/86 (60%)

Query:   471 KTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYP 530
             K  + C ++L+GRC +GD+CKF HD   L K  + C  + +  C KG+NC + H+  ++P
Sbjct:   273 KGKQICKYFLEGRCIKGDQCKFDHDA-ELEKRKEICKFYLQGYCTKGENCIYMHN--EFP 329

Query:   531 CENFVAKGFCNRGDNCLFSHKLPPKE 556
             C+ + +   C +GDNC FSH    KE
Sbjct:   330 CKFYHSGAKCYQGDNCKFSHDDLTKE 355

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

DICTYBASE|DDB_G0277543 DDB_G0277543 "CCCH-type zinc finger-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 176 (67.0 bits), Expect = 8.8e-11, Sum P(3) = 8.8e-11
 Identities = 36/96 (37%), Positives = 53/96 (55%)

Query:   465 PQNLKPKTVKYCHHYLKGRCQEGDKCKFSHD-TVPLTKSTKACCHFARNSCMKGDNCPFD 523
             P+  K  TV  C+ Y  G C++G  C F H+  V + K T+ C +F  +SC KGD+C + 
Sbjct:  1373 PKEKKELTV-VCNFYKIGMCKKGKDCTFIHEGPVEIRKPTEVCKYFKTSSCAKGDSCTYS 1431

Query:   524 HDLSKYPCENFVAKGFCNRGDNCLFSHKL--PPKEQ 557
             HDL   PC+ + +   C    NC + H+L  PP +Q
Sbjct:  1432 HDLKIEPCKYYNSPTGCTNV-NCQYDHRLITPPLQQ 1466

GO:0005615 "extracellular space" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

MGI|MGI:1930128 Zc3h8 "zinc finger CCCH type containing 8" [Mus musculus (taxid:10090)]

 Score = 171 (65.3 bits), Expect = 7.4e-10, P = 7.4e-10
 Identities = 30/80 (37%), Positives = 49/80 (61%)

Query:   471 KTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYP 530
             K  + C ++L+ +C +GD+CKF HD   + K  + C ++ +  C KG+NC + H  S+YP
Sbjct:   206 KGKQVCKYFLERKCIKGDQCKFDHDA-EIEKKKEMCKYYVQGYCTKGENCLYLH--SEYP 262

Query:   531 CENFVAKGFCNRGDNCLFSH 550
             C+ +     C +GD+C FSH
Sbjct:   263 CKFYHTGTKCYQGDHCNFSH 282

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISO

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0033085 "negative regulation of T cell differentiation in thymus" evidence=ISO

GO:0043029 "T cell homeostasis" evidence=ISO

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO;IMP

GO:0046677 "response to antibiotic" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0070245 "positive regulation of thymocyte apoptotic process" evidence=ISO

UNIPROTKB|F1PWF3 ZC3H6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 183 (69.5 bits), Expect = 1.1e-09, Sum P(4) = 1.1e-09
 Identities = 34/86 (39%), Positives = 52/86 (60%)

Query:   471 KTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYP 530
             K  + C ++L+GRC +GD+CKF HD   L K  + C  + +  C KG+NC + H+  ++P
Sbjct:   263 KGKQICKYFLEGRCIKGDQCKFDHDA-ELEKRKEICKFYLQGYCTKGENCIYMHN--EFP 319

Query:   531 CENFVAKGFCNRGDNCLFSHKLPPKE 556
             C+ + +   C +GDNC FSH    KE
Sbjct:   320 CKFYHSGAKCYQGDNCKFSHDDLTKE 345

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

RGD|1310458 Zc3h8 "zinc finger CCCH type containing 8" [Rattus norvegicus (taxid:10116)]

 Score = 168 (64.2 bits), Expect = 1.6e-09, P = 1.6e-09
 Identities = 29/80 (36%), Positives = 49/80 (61%)

Query:   471 KTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYP 530
             K  + C ++L+ +C +GD+CKF HD   + K  + C ++ +  C KG+NC + H+  +YP
Sbjct:   206 KGKQVCKYFLERKCIKGDQCKFDHDA-EIEKKKEMCKYYVQGYCTKGENCLYLHN--EYP 262

Query:   531 CENFVAKGFCNRGDNCLFSH 550
             C+ +     C +GD+C FSH
Sbjct:   263 CKFYHTGTKCYQGDHCNFSH 282

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0033085 "negative regulation of T cell differentiation in thymus" evidence=IEA;ISO

GO:0043029 "T cell homeostasis" evidence=IEA;ISO

GO:0043565 "sequence-specific DNA binding" evidence=IEA;ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0046677 "response to antibiotic" evidence=IEA;ISO

GO:0070245 "positive regulation of thymocyte apoptotic process" evidence=IEA;ISO

UNIPROTKB|Q17QY2 ZC3H8 "Zinc finger CCCH-type containing 8" [Bos taurus (taxid:9913)]

 Score = 164 (62.8 bits), Expect = 4.6e-09, P = 4.6e-09
 Identities = 31/97 (31%), Positives = 51/97 (52%)

Query:   476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFV 535
             C ++L+ +C +GD+CKF HD   + K  + C  + +  C +G+NC + H+  +YPC+ + 
Sbjct:   210 CKYFLERKCIKGDQCKFDHDA-EIEKKKEMCKFYVQGYCTRGENCLYLHN--EYPCKFYH 266

Query:   536 AKGFCNRGDNCLFSHKLPPKEQDPPTPSTCTPELKPS 572
                 C +G++C FSH     E          PE K S
Sbjct:   267 TGAKCYQGEHCKFSHAPLTDETQELLAKILDPERKSS 303

GO:0070245 "positive regulation of thymocyte apoptotic process" evidence=IEA

GO:0046677 "response to antibiotic" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0043029 "T cell homeostasis" evidence=IEA

GO:0033085 "negative regulation of T cell differentiation in thymus" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|A6NMK7 CPSF4L "Putative cleavage and polyadenylation specificity factor subunit 4-like protein" [Homo sapiens (taxid:9606)]

 Score = 144 (55.7 bits), Expect = 7.8e-09, P = 7.8e-09
 Identities = 37/102 (36%), Positives = 50/102 (49%)

Query:   464 LP-QNLKPKTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPF 522
             LP Q +       C+ + KG C++G  C F HD     +    C H+ R  C KGD+C F
Sbjct:    28 LPFQGMDKSASAVCNFFTKGLCEKGKLCPFRHDR---GEKMVVCKHWLRGLCKKGDHCKF 84

Query:   523 DH--DLSKYPCENFVAK-GFCNRGDNCLFSHKLPP-KEQDPP 560
              H  DL++ P   F +K G C+  + C F H  P  K QD P
Sbjct:    85 LHQYDLTRMPECYFYSKFGDCSNKE-CSFLHVKPAFKSQDCP 125

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00061015 hypothetical protein (928 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	879
smart00356	27	smart00356, ZnF_C3H1, zinc finger	1e-04
COG5084	285	COG5084, YTH1, Cleavage and polyadenylation specif	2e-04
smart00356	27	smart00356, ZnF_C3H1, zinc finger	6e-04
smart00356	27	smart00356, ZnF_C3H1, zinc finger	0.001
COG5252	299	COG5252, COG5252, Uncharacterized conserved protei	0.002

>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)

Query: 469 KPKTVKYCHHYLKGRCQEGDKCKFSHD 495
           K KT   C  + +G C  GD+CKF+H 
Sbjct: 1   KYKTE-LCKFFKRGYCPRGDRCKFAHP 26

Length = 27

>gnl|CDD|227416 COG5084, YTH1, Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 40/172 (23%), Positives = 61/172 (35%), Gaps = 23/172 (13%)

Query: 465 PQNLKPKTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFA-RNSCMKGDNCPFD 523
             N    +   C  +L+G C+ G  C+F H+    +     C  F+ + SC  G +C + 
Sbjct: 96  HVNPVLSSSVVCKFFLRGLCKSGFSCEFLHEYDLRSSQGPPCRSFSLKGSCSSGPSCGYS 155

Query: 524 HDL--SKYP-CENF--VAKGFCNRGDNCLFSHKLPPKEQDPPTPSTCTPELKPSPPLYAS 578
           H    S    C+ +     GFC  G +C FSH L             +P    +PP    
Sbjct: 156 HIDPDSFAGNCDQYSGATYGFCPLGASCKFSHTLKRV------SYGSSPCGNYTPPFS-- 207

Query: 579 NLLKPLNNNKVSHQNVDALSNHGKVSSFKNIEQSVAKSILKPPALAPKGISY 630
               P      S     +   +GK +S      S+   I + P  AP     
Sbjct: 208 ----PPGTPSESV----SSWGYGKGTSCSLSHPSLNIDI-QQPQTAPSRKDS 250

Length = 285

>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger

 Score = 37.6 bits (88), Expect = 6e-04
 Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 1/21 (4%)

Query: 530 PCENFVAKGFCNRGDNCLFSH 550
            C+ F  +G+C RGD C F+H
Sbjct: 6   LCKFF-KRGYCPRGDRCKFAH 25

Length = 27

>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 503 TKACCHFARNSCMKGDNCPFDHDL 526
           T+ C  F R  C +GD C F H L
Sbjct: 4   TELCKFFKRGYCPRGDRCKFAHPL 27

Length = 27

>gnl|CDD|227577 COG5252, COG5252, Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]

 Score = 40.8 bits (95), Expect = 0.002
 Identities = 30/137 (21%), Positives = 50/137 (36%), Gaps = 27/137 (19%)

Query: 432 SALSKEKKAKKKQKERKKRAEKNRQLGVRRLKLPQNLKPKTVKYCHHYLKGRCQEGDKCK 491
           +   + +K +K + E K+R  + +        +   + PKTV  C  +L   C +GD CK
Sbjct: 52  NLKEQLEKKEKMRMEEKRREPEKQ-------VIRAGVDPKTVV-CALFLNKTCAKGDACK 103

Query: 492 FSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYP---CENFVAKGFCNRG----- 543
           F+H      K+ K   +       K ++ P            C+ F+       G     
Sbjct: 104 FAHGKEEARKTEKPDLYSDVRD--KEEDVPLGKRPWINTDRVCKFFIEA--MESGKYGWG 159

Query: 544 -------DNCLFSHKLP 553
                    C + HKLP
Sbjct: 160 WTCPNGNMRCSYIHKLP 176

Length = 299

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	879
KOG1763	343	consensus Uncharacterized conserved protein, conta	99.52
KOG1040	325	consensus Polyadenylation factor I complex, subuni	99.18
COG5252	299	Uncharacterized conserved protein, contains CCCH-t	99.16
KOG1492	377	consensus C3H1-type Zn-finger protein [General fun	99.01
KOG1492	377	consensus C3H1-type Zn-finger protein [General fun	98.9
KOG1595	528	consensus CCCH-type Zn-finger protein [General fun	98.84
COG5084	285	YTH1 Cleavage and polyadenylation specificity fact	98.75
KOG1040	325	consensus Polyadenylation factor I complex, subuni	98.69
KOG4791	667	consensus Uncharacterized conserved protein [Funct	98.62
KOG1677	332	consensus CCCH-type Zn-finger protein [General fun	98.54
COG5084	285	YTH1 Cleavage and polyadenylation specificity fact	98.35
KOG4791	667	consensus Uncharacterized conserved protein [Funct	98.31
KOG2494	331	consensus C3H1-type Zn-finger protein [Transcripti	98.3
KOG1677	332	consensus CCCH-type Zn-finger protein [General fun	97.89
COG5063	351	CTH1 CCCH-type Zn-finger protein [General function	97.54
KOG2494	331	consensus C3H1-type Zn-finger protein [Transcripti	97.53
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	97.3
KOG1595	528	consensus CCCH-type Zn-finger protein [General fun	97.12
COG5063	351	CTH1 CCCH-type Zn-finger protein [General function	97.05
smart00356	27	ZnF_C3H1 zinc finger.	96.99
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	96.65
smart00356	27	ZnF_C3H1 zinc finger.	96.01
KOG2333	614	consensus Uncharacterized conserved protein [Gener	95.63
KOG2333	614	consensus Uncharacterized conserved protein [Gener	95.62
KOG2185	486	consensus Predicted RNA-processing protein, contai	94.8
KOG2185	486	consensus Predicted RNA-processing protein, contai	93.5
PF14608	19	zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type	92.34
PF14608	19	zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type	91.32
KOG3702	681	consensus Nuclear polyadenylated RNA binding prote	88.62
KOG3702	681	consensus Nuclear polyadenylated RNA binding prote	87.39
COG5152	259	Uncharacterized conserved protein, contains RING a	84.68
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	81.08

>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]

Probab=99.52  E-value=2.6e-15  Score=158.79  Aligned_cols=129  Identities=32%  Similarity=0.583  Sum_probs=81.1

Q ss_pred             CCcCcccccccccchH------------------HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccCCCccccccccccc
Q 002804          421 LDSGACNKRKRSALSK------------------EKKAKKKQKERKKRAEKNRQLGVRRLKLPQNLKPKTVKYCHHYLKG  482 (879)
Q Consensus       421 ~tFGLKNKkKKk~vSk------------------E~KaKKKKKerkkraEkrkq~Gvkr~k~p~v~DPKs~~VCrfFlrG  482 (879)
                      +|||||||++++.+++                  ...+++++++.+++ +++...-...++++.++|||+ .+|.||++|
T Consensus        24 KTFGLKNKk~sk~vQK~I~qv~~qvq~~~~~d~~k~~e~kkk~e~~~~-e~~~lfkp~~qkv~~gvDPKS-vvCafFk~g  101 (343)
T KOG1763|consen   24 KTFGLKNKKGSKKVQKFIKQVEQQVQQNPRKDAKKRAEEKKKKEEKQR-ELNELFKPADQKVPKGVDPKS-VVCAFFKQG  101 (343)
T ss_pred             hhcccccccccHHHHHHHHHHHHHhhcccchhHHHHHHHHhcchHHHH-HHHHhccccccccccCCCchH-HHHHHHhcc
Confidence            3999999999999777                  11222222223332 334444457789999999999 999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCcccc-------ccccCC------CCCCCCCCCCCCCCCCCCccccc------cC---CC
Q 002804          483 RCQEGDKCKFSHDTVPLTKSTKACC-------HFARNS------CMKGDNCPFDHDLSKYPCENFVA------KG---FC  540 (879)
Q Consensus       483 ~C~KGdkCkFSHD~splrK~t~~Ck-------~FlkGs------Ck~GD~CpFsH~lstipCkfF~~------~G---~C  540 (879)
                      .|.+|+.|+|+|++...++....=-       .|....      =++|   . ....+.++|+||+.      ||   .|
T Consensus       102 ~C~KG~kCKFsHdl~~~~k~eK~dly~d~rdemWD~~kl~~vv~~K~~---k-~k~~tdiVCKfFLeAvE~~kYGWfW~C  177 (343)
T KOG1763|consen  102 TCTKGDKCKFSHDLAVERKKEKIDLYPDTRDEMWDEEKLEEVVLKKHG---K-PKPTTDIVCKFFLEAVENGKYGWFWEC  177 (343)
T ss_pred             CCCCCCcccccchHHHhhhccchhccccchhhhhhHHHHHHHHHhhcc---C-CCCchhHHHHHHHHHHhcCCccceeEC
Confidence            9999999999999865443200000       011100      0000   0 00012345666652      33   59


Q ss_pred             CCC-CCCCCCCCCCCC
Q 002804          541 NRG-DNCLFSHKLPPK  555 (879)
Q Consensus       541 ~rG-dsCrFaH~~~~~  555 (879)
                      |+| +.|.|+|.+|..
T Consensus       178 PnGg~~C~YrHaLP~G  193 (343)
T KOG1763|consen  178 PNGGDKCIYRHALPEG  193 (343)
T ss_pred             CCCCCeeeeeecCCcc
Confidence            999 579999999873

>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]

Probab=99.18  E-value=1.3e-11  Score=133.81  Aligned_cols=98  Identities=31%  Similarity=0.706  Sum_probs=80.5

Q ss_pred             CCCcccccccccccCCCCCCCCCCCCCCCCCCCCCcccccccc-CCCCCCCCCCCCCCC---CCCCCccccccCCCCCCC
Q 002804          469 KPKTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFAR-NSCMKGDNCPFDHDL---SKYPCENFVAKGFCNRGD  544 (879)
Q Consensus       469 DPKs~~VCrfFlrG~C~KGdkCkFSHD~splrK~t~~Ck~Flk-GsCk~GD~CpFsH~l---stipCkfF~~~G~C~rGd  544 (879)
                      +.++.++|+||++|.|++|+.|.|+|+. .+.+. +.|.||.. |.|.+|.+|+|.|..   ....|.+|. .|+|+.|+
T Consensus        73 ~~~~~~vcK~~l~glC~kgD~C~Flhe~-~~~k~-rec~ff~~~g~c~~~~~c~y~h~dpqt~~k~c~~~~-~g~c~~g~  149 (325)
T KOG1040|consen   73 DSRGKVVCKHWLRGLCKKGDQCEFLHEY-DLTKM-RECKFFSLFGECTNGKDCPYLHGDPQTAIKKCKWYK-EGFCRGGP  149 (325)
T ss_pred             ccCCceeehhhhhhhhhccCcCcchhhh-hhccc-ccccccccccccccccCCcccCCChhhhhhccchhh-hccCCCcc
Confidence            4667799999999999999999999999 66665 78999875 899999999999985   234699998 89999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002804          545 NCLFSHKLPPKEQDPPTPSTCTPELKPSPPLYAS  578 (879)
Q Consensus       545 sCrFaH~~~~~~~lP~as~vCtp~Lkg~SpsssS  578 (879)
                      .|+++|....         .|.+.+.+.|+.+..
T Consensus       150 ~c~~~h~~~~---------~c~~y~~gfC~~g~q  174 (325)
T KOG1040|consen  150 SCKKRHERKV---------LCPPYNAGFCPKGPQ  174 (325)
T ss_pred             hhhhhhhccc---------CCCchhhhhccCCCC
Confidence            9999999873         355555555555544

>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]

Probab=99.16  E-value=5.4e-12  Score=130.94  Aligned_cols=76  Identities=28%  Similarity=0.510  Sum_probs=53.9

Q ss_pred             CcCcccccccccchH--------HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccCCCcccccccccccCCCCCCCCCCC
Q 002804          422 DSGACNKRKRSALSK--------EKKAKKKQKERKKRAEKNRQLGVRRLKLPQNLKPKTVKYCHHYLKGRCQEGDKCKFS  493 (879)
Q Consensus       422 tFGLKNKkKKk~vSk--------E~KaKKKKKerkkraEkrkq~Gvkr~k~p~v~DPKs~~VCrfFlrG~C~KGdkCkFS  493 (879)
                      +||||||+++-.++.        ..+.+.++++++..++++++.-  .+.++.+++||+ .+|..|+.+.|.+|+.|+|+
T Consensus        29 tFGlKNKnrsTKVqa~ikQie~~~~~~~~e~~~k~~~e~KRre~e--kq~iragvdpK~-~vcalF~~~~c~kg~~ckF~  105 (299)
T COG5252          29 TFGLKNKNRSTKVQAIIKQIETLNLKEQLEKKEKMRMEEKRREPE--KQVIRAGVDPKT-VVCALFLNKTCAKGDACKFA  105 (299)
T ss_pred             hcccccccccHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhcchh--hhhhccccCchh-HHHHHhccCccccCchhhhh
Confidence            999999999966665        2222333333333333333331  256788899999 99999999999999999999


Q ss_pred             CCCCCCC
Q 002804          494 HDTVPLT  500 (879)
Q Consensus       494 HD~splr  500 (879)
                      |+....+
T Consensus       106 h~~ee~r  112 (299)
T COG5252         106 HGKEEAR  112 (299)
T ss_pred             cchHHHh
Confidence            9965443

>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]

Probab=99.01  E-value=1.1e-10  Score=120.91  Aligned_cols=99  Identities=27%  Similarity=0.564  Sum_probs=51.8

Q ss_pred             ccccccc-ccCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCC---CCCCCccccccCCCCCCCCCCCC
Q 002804          474 KYCHHYL-KGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDL---SKYPCENFVAKGFCNRGDNCLFS  549 (879)
Q Consensus       474 ~VCrfFl-rG~C~KGdkCkFSHD~splrK~t~~Ck~FlkGsCk~GD~CpFsH~l---stipCkfF~~~G~C~rGdsCrFa  549 (879)
                      +.|+||. .|.|-+|..|+|.|.+..   . .+|+.|+.|+|.+.++|.++|.+   +.+.|+||+ .|.|.+. +|+|.
T Consensus       207 vycryynangicgkgaacrfvheptr---k-ticpkflngrcnkaedcnlsheldprripacryfl-lgkcnnp-ncryv  280 (377)
T KOG1492|consen  207 VYCRYYNANGICGKGAACRFVHEPTR---K-TICPKFLNGRCNKAEDCNLSHELDPRRIPACRYFL-LGKCNNP-NCRYV  280 (377)
T ss_pred             eEEEEecCCCcccCCceeeeeccccc---c-ccChHHhcCccCchhcCCcccccCccccchhhhhh-hccCCCC-CceEE
Confidence            5566665 366666666666665531   1 45666666666665666666653   122366665 5666553 56666


Q ss_pred             CCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCC
Q 002804          550 HKLPPKEQDPPTPSTCTPEL-KPSPPLYASNLLKP  583 (879)
Q Consensus       550 H~~~~~~~lP~as~vCtp~L-kg~SpsssS~~~~p  583 (879)
                      |..-....     .+|..|. ++.|.++.+|...+
T Consensus       281 hihysena-----picfefakygfcelgtscknqh  310 (377)
T KOG1492|consen  281 HIHYSENA-----PICFEFAKYGFCELGTSCKNQH  310 (377)
T ss_pred             EEeecCCC-----ceeeeehhcceeccccccccce
Confidence            65443221     3444332 35555555554443

>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]

Probab=98.90  E-value=6.2e-10  Score=115.54  Aligned_cols=95  Identities=27%  Similarity=0.567  Sum_probs=85.0

Q ss_pred             CCCCCCCCccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCC---CCCCCcccc
Q 002804          459 VRRLKLPQNLKPKTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDL---SKYPCENFV  535 (879)
Q Consensus       459 vkr~k~p~v~DPKs~~VCrfFlrG~C~KGdkCkFSHD~splrK~t~~Ck~FlkGsCk~GD~CpFsH~l---stipCkfF~  535 (879)
                      -+...|++++.|.+..+|.-|+.|+|.+...|.++|.+.|.+  .+.|+||+.|.|.+ ++|+|.|..   ..++|..|.
T Consensus       219 gkgaacrfvheptrkticpkflngrcnkaedcnlsheldprr--ipacryfllgkcnn-pncryvhihysenapicfefa  295 (377)
T KOG1492|consen  219 GKGAACRFVHEPTRKTICPKFLNGRCNKAEDCNLSHELDPRR--IPACRYFLLGKCNN-PNCRYVHIHYSENAPICFEFA  295 (377)
T ss_pred             cCCceeeeeccccccccChHHhcCccCchhcCCcccccCccc--cchhhhhhhccCCC-CCceEEEEeecCCCceeeeeh
Confidence            345678999999999999999999999999999999998753  38999999999998 999999973   567899999


Q ss_pred             ccCCCCCCCCCCCCCCCCCCC
Q 002804          536 AKGFCNRGDNCLFSHKLPPKE  556 (879)
Q Consensus       536 ~~G~C~rGdsCrFaH~~~~~~  556 (879)
                      .+|+|..|..|+-.|.+.+.+
T Consensus       296 kygfcelgtscknqhilqctd  316 (377)
T KOG1492|consen  296 KYGFCELGTSCKNQHILQCTD  316 (377)
T ss_pred             hcceeccccccccceeeeecc
Confidence            999999999999999998744

>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=98.84  E-value=4.2e-08  Score=111.50  Aligned_cols=76  Identities=28%  Similarity=0.724  Sum_probs=62.6

Q ss_pred             ccCCCCCCCCCCCCCCCCCCCC--------CccccccccCCCCCCCCCCCCCCC----------CCCCCccccccCCCCC
Q 002804          481 KGRCQEGDKCKFSHDTVPLTKS--------TKACCHFARNSCMKGDNCPFDHDL----------SKYPCENFVAKGFCNR  542 (879)
Q Consensus       481 rG~C~KGdkCkFSHD~splrK~--------t~~Ck~FlkGsCk~GD~CpFsH~l----------stipCkfF~~~G~C~r  542 (879)
                      +++|..+..|+|+|.....||.        -.+|+.|.+|.|.+||.|.|+|..          ++.+|+..   |+|++
T Consensus       206 R~~shDwteCPf~HpgEkARRRDPRkyhYs~tpCPefrkG~C~rGD~CEyaHgvfEcwLHPa~YRT~~CkDg---~~C~R  282 (528)
T KOG1595|consen  206 RPRSHDWTECPFAHPGEKARRRDPRKYHYSSTPCPEFRKGSCERGDSCEYAHGVFECWLHPARYRTRKCKDG---GYCPR  282 (528)
T ss_pred             CccCCCcccCCccCCCcccccCCcccccccCccCcccccCCCCCCCccccccceehhhcCHHHhccccccCC---CCCcc
Confidence            3677778999999965544432        469999999999999999999993          67789964   88999


Q ss_pred             CCCCCCCCCCCCCCCCCC
Q 002804          543 GDNCLFSHKLPPKEQDPP  560 (879)
Q Consensus       543 GdsCrFaH~~~~~~~lP~  560 (879)
                       .-|.|+|...+.+.++.
T Consensus       283 -rvCfFAH~~eqLR~l~~  299 (528)
T KOG1595|consen  283 -RVCFFAHSPEQLRPLPP  299 (528)
T ss_pred             -ceEeeecChHHhcccCC
Confidence             69999999998877654

>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

Probab=98.75  E-value=1.6e-08  Score=108.37  Aligned_cols=105  Identities=28%  Similarity=0.587  Sum_probs=83.1

Q ss_pred             CCcccccccccccCCCCCCCCCCCCCCCCCCCCCcccccc-ccCCCCCCCCCCCCCCC---CCCCCccccc--cCCCCCC
Q 002804          470 PKTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHF-ARNSCMKGDNCPFDHDL---SKYPCENFVA--KGFCNRG  543 (879)
Q Consensus       470 PKs~~VCrfFlrG~C~KGdkCkFSHD~splrK~t~~Ck~F-lkGsCk~GD~CpFsH~l---stipCkfF~~--~G~C~rG  543 (879)
                      +.+-++|++|+.|+|..|..|.|+|...........|++| ..|.|..|..|.|.|..   ....|.+|..  +|+|+.|
T Consensus       101 ~~s~V~c~~~~~g~c~s~~~c~~lh~~d~~~s~~~~c~~Fs~~G~cs~g~~c~~~h~dp~~~~~~~~~~~~~~~~f~p~g  180 (285)
T COG5084         101 LSSSVVCKFFLRGLCKSGFSCEFLHEYDLRSSQGPPCRSFSLKGSCSSGPSCGYSHIDPDSFAGNCDQYSGATYGFCPLG  180 (285)
T ss_pred             ccCCcccchhccccCcCCCccccccCCCcccccCCCcccccccceeccCCCCCccccCcccccccccccCcccccccCCC
Confidence            4555999999999999999999999998765445899999 67999999999999984   3445888874  7999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002804          544 DNCLFSHKLPPKEQDPPTPSTCTPELKPSPPLYA  577 (879)
Q Consensus       544 dsCrFaH~~~~~~~lP~as~vCtp~Lkg~Spsss  577 (879)
                      ..|++.|........+   ..|.......||++.
T Consensus       181 ~~c~~~H~~~~~~~~~---~p~~~y~~~fsP~g~  211 (285)
T COG5084         181 ASCKFSHTLKRVSYGS---SPCGNYTPPFSPPGT  211 (285)
T ss_pred             Cccccccccccccccc---cccccCcCCcCCCCC
Confidence            9999999998543322   245555555555444

>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]

Probab=98.69  E-value=2.1e-08  Score=109.33  Aligned_cols=109  Identities=25%  Similarity=0.436  Sum_probs=82.4

Q ss_pred             CCCcccccccccc--cCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCC---CCCCCccccccCCCCCC
Q 002804          469 KPKTVKYCHHYLK--GRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDL---SKYPCENFVAKGFCNRG  543 (879)
Q Consensus       469 DPKs~~VCrfFlr--G~C~KGdkCkFSHD~splrK~t~~Ck~FlkGsCk~GD~CpFsH~l---stipCkfF~~~G~C~rG  543 (879)
                      ++.....|.++..  -.|.+|..|.+.|......+...+|+||++|.|++||.|.|+|.+   +...|.||..+|.|.++
T Consensus        41 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vcK~~l~glC~kgD~C~Flhe~~~~k~rec~ff~~~g~c~~~  120 (325)
T KOG1040|consen   41 DESGRATCEFNESREKPCERGPICPKSHNDVSDSRGKVVCKHWLRGLCKKGDQCEFLHEYDLTKMRECKFFSLFGECTNG  120 (325)
T ss_pred             cccccchhcccccCCCCccCCCCCccccCCccccCCceeehhhhhhhhhccCcCcchhhhhhcccccccccccccccccc
Confidence            4433478999987  679999999999999642233489999999999999999999984   45579999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002804          544 DNCLFSHKLPPKEQDPPTPSTCTPELKPSPPLYASNLLK  582 (879)
Q Consensus       544 dsCrFaH~~~~~~~lP~as~vCtp~Lkg~SpsssS~~~~  582 (879)
                      .+|.|.|..+...     ...|.-+-.+.|..+.++...
T Consensus       121 ~~c~y~h~dpqt~-----~k~c~~~~~g~c~~g~~c~~~  154 (325)
T KOG1040|consen  121 KDCPYLHGDPQTA-----IKKCKWYKEGFCRGGPSCKKR  154 (325)
T ss_pred             cCCcccCCChhhh-----hhccchhhhccCCCcchhhhh
Confidence            9999999986322     233443444555555544443

>KOG4791 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.62  E-value=2.4e-08  Score=111.83  Aligned_cols=78  Identities=28%  Similarity=0.686  Sum_probs=67.1

Q ss_pred             cccccccccCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCC-----CCCCCccccccCC-CCCCCCCC
Q 002804          474 KYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDL-----SKYPCENFVAKGF-CNRGDNCL  547 (879)
Q Consensus       474 ~VCrfFlrG~C~KGdkCkFSHD~splrK~t~~Ck~FlkGsCk~GD~CpFsH~l-----stipCkfF~~~G~-C~rGdsCr  547 (879)
                      ..|.||++-.|++++.|.|+|....+... ..|.+|+.+.|.+ +.|+|+|..     +..+|+||. +|. |.+ ++|-
T Consensus         4 ~dcyff~ys~cKk~d~c~~rh~E~al~n~-t~C~~w~~~~~C~-k~C~YRHSe~~~kr~e~~CYwe~-~p~gC~k-~~Cg   79 (667)
T KOG4791|consen    4 EDCYFFFYSTCKKGDSCPFRHCEAALGNE-TVCTLWQEGRCCR-KVCRYRHSEIDKKRSEIPCYWEN-QPTGCQK-LNCG   79 (667)
T ss_pred             ccchhhhhhhhhccCcCcchhhHHHhcCc-chhhhhhhcCccc-ccccchhhHHhhhcCcccceeec-CCCccCC-Cccc
Confidence            56999999999999999999999877665 8999999988666 699999983     577899998 555 999 4999


Q ss_pred             CCCCCCCC
Q 002804          548 FSHKLPPK  555 (879)
Q Consensus       548 FaH~~~~~  555 (879)
                      |+|..++.
T Consensus        80 fRH~~pPL   87 (667)
T KOG4791|consen   80 FRHNRPPL   87 (667)
T ss_pred             cccCCCch
Confidence            99988554

>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=98.54  E-value=7.9e-08  Score=102.82  Aligned_cols=83  Identities=31%  Similarity=0.751  Sum_probs=69.1

Q ss_pred             cccccccc-cCCCCCCCCCCCCCC-CC--------------CCCCCcccccccc-CCCCC-CCCCCCCCCC---------
Q 002804          474 KYCHHYLK-GRCQEGDKCKFSHDT-VP--------------LTKSTKACCHFAR-NSCMK-GDNCPFDHDL---------  526 (879)
Q Consensus       474 ~VCrfFlr-G~C~KGdkCkFSHD~-sp--------------lrK~t~~Ck~Flk-GsCk~-GD~CpFsH~l---------  526 (879)
                      ..|.+|.+ +.|..+..|+|.|.. ..              .+..+++|++|.+ |.|++ |+.|+|.|..         
T Consensus        87 ~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~~~~~~~~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~~~  166 (332)
T KOG1677|consen   87 GDCSAYLRTGVCGYGSSCRYNHPDLRLRPRPVRRSRGERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPSSE  166 (332)
T ss_pred             cccccccccCCCCCCCCCCccCcccccccCCccccccccCcccccCCcceeeecCccccccCchhhhcCCcccccccccc
Confidence            57999996 999999999999995 11              1122679999987 89999 9999999983         


Q ss_pred             ---------CCCCCccccccCCCCCCCCCCCCCCCCCCC
Q 002804          527 ---------SKYPCENFVAKGFCNRGDNCLFSHKLPPKE  556 (879)
Q Consensus       527 ---------stipCkfF~~~G~C~rGdsCrFaH~~~~~~  556 (879)
                               ++.+|.+|...|.|++|..|+|.|......
T Consensus       167 ~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~~~  205 (332)
T KOG1677|consen  167 NQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPEDR  205 (332)
T ss_pred             hhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCcccc
Confidence                     245799999889999999999999987643

>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

Probab=98.35  E-value=2.5e-06  Score=91.93  Aligned_cols=115  Identities=24%  Similarity=0.369  Sum_probs=88.7

Q ss_pred             cccccccccc-cCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCC-----CCCCccccccCCCCCCCC
Q 002804          472 TVKYCHHYLK-GRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLS-----KYPCENFVAKGFCNRGDN  545 (879)
Q Consensus       472 s~~VCrfFlr-G~C~KGdkCkFSHD~splrK~t~~Ck~FlkGsCk~GD~CpFsH~ls-----tipCkfF~~~G~C~rGds  545 (879)
                      ....|.+|.. +.+-....|++.|....+.+. .+|++|+.|.|+.+..|.|+|.+.     ..+|++|...|.|..|..
T Consensus        73 n~~~~~~~~~~~~~~~~~s~~~~~~~~~~~s~-V~c~~~~~g~c~s~~~c~~lh~~d~~~s~~~~c~~Fs~~G~cs~g~~  151 (285)
T COG5084          73 NTVACISRNFNSIRGSRLSTPNNHVNPVLSSS-VVCKFFLRGLCKSGFSCEFLHEYDLRSSQGPPCRSFSLKGSCSSGPS  151 (285)
T ss_pred             cccccccccccCCccccccCCccccCccccCC-cccchhccccCcCCCccccccCCCcccccCCCcccccccceeccCCC
Confidence            3477999985 445455589999998665454 899999999999999999999974     678999977999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccc
Q 002804          546 CLFSHKLPPKEQDPPTPSTCTPELKPSPPLYASNLLKPLNNNKVSHQNVDALS  598 (879)
Q Consensus       546 CrFaH~~~~~~~lP~as~vCtp~Lkg~SpsssS~~~~pl~~q~~sSh~~k~~S  598 (879)
                      |.|.|..+..     ....|.-+..      ..++-++++.+|.+.|.....+
T Consensus       152 c~~~h~dp~~-----~~~~~~~~~~------~~~~f~p~g~~c~~~H~~~~~~  193 (285)
T COG5084         152 CGYSHIDPDS-----FAGNCDQYSG------ATYGFCPLGASCKFSHTLKRVS  193 (285)
T ss_pred             CCccccCccc-----ccccccccCc------ccccccCCCCcccccccccccc
Confidence            9999998432     2344532221      2678888889999998776443

>KOG4791 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.31  E-value=8.3e-07  Score=99.88  Aligned_cols=159  Identities=19%  Similarity=0.229  Sum_probs=98.3

Q ss_pred             ccccccccccCCCCCCCCCCCCCCCCCCCCCccccccccCC-CCCCCCCCCCCCC-------------------------
Q 002804          473 VKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNS-CMKGDNCPFDHDL-------------------------  526 (879)
Q Consensus       473 ~~VCrfFlrG~C~KGdkCkFSHD~splrK~t~~Ck~FlkGs-Ck~GD~CpFsH~l-------------------------  526 (879)
                      .++|+||+.+.|.+ +.|+|.|..-...+...+|.||+++. |.+ ++|-|+|..                         
T Consensus        32 ~t~C~~w~~~~~C~-k~C~YRHSe~~~kr~e~~CYwe~~p~gC~k-~~CgfRH~~pPLkg~l~~~p~~pe~ev~~~~~SA  109 (667)
T KOG4791|consen   32 ETVCTLWQEGRCCR-KVCRYRHSEIDKKRSEIPCYWENQPTGCQK-LNCGFRHNRPPLKGVLPTVPESPEEEVKASQLSA  109 (667)
T ss_pred             cchhhhhhhcCccc-ccccchhhHHhhhcCcccceeecCCCccCC-CccccccCCCchhhhccCCCCCcccccccccccC
Confidence            48899999998887 48999999876654558999999987 998 999999941                         


Q ss_pred             -------CCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCC-CCCCCCCCCCCCCCC--CCCCcccccc
Q 002804          527 -------SKYPCENFVAKGFCNRGDNCLFSHKLPPKEQDPPTPS---TCTPE-LKPSPPLYASNLLKP--LNNNKVSHQN  593 (879)
Q Consensus       527 -------stipCkfF~~~G~C~rGdsCrFaH~~~~~~~lP~as~---vCtp~-Lkg~SpsssS~~~~p--l~~q~~sSh~  593 (879)
                             ...||-+|+ .++|..++-|-|.|.++.......+..   .-++. -..+.+-..-..+-+  ++....-.|.
T Consensus       110 q~~sV~~~p~P~l~~~-K~~e~~~D~~s~Lh~P~A~~~~~d~e~~~~A~~e~~d~K~~~~l~~~KK~~~~~~~K~V~~H~  188 (667)
T KOG4791|consen  110 QQNSVQSNPSPQLRSV-KKVESSEDVPSPLHPPVAINAADDDEDDDDAFSEEGDEKKTPTLQPTKKVHNGLRVKSVRKHA  188 (667)
T ss_pred             CCcccccCCchHHHHh-hhhhhhccccccCCCCcccccccCcccccccccccccCCCCCCCCcccccCCcccceeecccc
Confidence                   023699998 899999999999999865322111110   00000 111111111112222  2222233333


Q ss_pred             ccc---cccCCCcCccccccccccccccCCCCCCCCCccccccCCc
Q 002804          594 VDA---LSNHGKVSSFKNIEQSVAKSILKPPALAPKGISYLFLGKS  636 (879)
Q Consensus       594 ~k~---~SsStgvs~~~sv~knVt~tv~sPP~~pPkGisFlsf~K~  636 (879)
                      ...   .-.+.++.+...+.  ....+..-|++.-+|..|.+|...
T Consensus       189 ~i~~~~~~~s~gi~D~~~v~--~k~~k~~~Pv~~~~G~Gv~s~~l~  232 (667)
T KOG4791|consen  189 VNIKQGECLSFGIKDLEEIK--SKKMKEKSPVQGEGGSGVSSLLLH  232 (667)
T ss_pred             cccccccccccccccHHHhc--cccccccCCCcccCCCCCChhhcC
Confidence            221   13455666654442  344555667778888888777665

>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]

Probab=98.30  E-value=5.8e-07  Score=97.61  Aligned_cols=53  Identities=28%  Similarity=0.760  Sum_probs=45.3

Q ss_pred             ccccccccccCCCCCCC-CCCCCCCCCCC---CCCccccccccCCCCCCCCCCCCCCC
Q 002804          473 VKYCHHYLKGRCQEGDK-CKFSHDTVPLT---KSTKACCHFARNSCMKGDNCPFDHDL  526 (879)
Q Consensus       473 ~~VCrfFlrG~C~KGdk-CkFSHD~splr---K~t~~Ck~FlkGsCk~GD~CpFsH~l  526 (879)
                      ..|||-|++|.|.+|+. |||+|......   .....|..|++|.|.+ ++|+|.|..
T Consensus        37 ~eVCReF~rn~C~R~d~~CkfaHP~~~~~V~~g~v~aC~Ds~kgrCsR-~nCkylHpp   93 (331)
T KOG2494|consen   37 LEVCREFLRNTCSRGDRECKFAHPPKNCQVSNGRVIACFDSQKGRCSR-ENCKYLHPP   93 (331)
T ss_pred             HHHHHHHHhccccCCCccccccCCCCCCCccCCeEEEEeccccCccCc-ccceecCCC
Confidence            48899999999999998 99999986432   1136899999999999 899999983

>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=97.89  E-value=6.4e-06  Score=88.34  Aligned_cols=53  Identities=34%  Similarity=0.787  Sum_probs=46.9

Q ss_pred             cccccccc-cCCCC-CCCCCCCCCCCCCC-------------CCCcccccccc-CCCCCCCCCCCCCCC
Q 002804          474 KYCHHYLK-GRCQE-GDKCKFSHDTVPLT-------------KSTKACCHFAR-NSCMKGDNCPFDHDL  526 (879)
Q Consensus       474 ~VCrfFlr-G~C~K-GdkCkFSHD~splr-------------K~t~~Ck~Flk-GsCk~GD~CpFsH~l  526 (879)
                      .+|++|.. |.|++ |++|+|.|....++             .++++|.+|.+ |.|++|..|.|.|..
T Consensus       133 ~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~  201 (332)
T KOG1677|consen  133 PLCRSFRKSGTCKYRGEQCRFAHGLEELRLPSSENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGE  201 (332)
T ss_pred             CcceeeecCccccccCchhhhcCCcccccccccchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCC
Confidence            88999996 99999 99999999986655             12689999998 999999999999984

>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]

Probab=97.54  E-value=7.6e-05  Score=81.02  Aligned_cols=81  Identities=26%  Similarity=0.520  Sum_probs=67.3

Q ss_pred             cccccccc-cCCCC---CCCCCCC---CCCCCCC-------CCCcccccccc-CCCCCCCCCCCCCCC------------
Q 002804          474 KYCHHYLK-GRCQE---GDKCKFS---HDTVPLT-------KSTKACCHFAR-NSCMKGDNCPFDHDL------------  526 (879)
Q Consensus       474 ~VCrfFlr-G~C~K---GdkCkFS---HD~splr-------K~t~~Ck~Flk-GsCk~GD~CpFsH~l------------  526 (879)
                      .+|.-|.. |.|..   |++|.|+   |.+..+.       .++.+|..|.. |.|.+|..|.|.|.-            
T Consensus       231 ~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~k~k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~~ie~~~~~~~  310 (351)
T COG5063         231 ELCESFTRKGTCPYWISGVKCQFACRGHGLNELKSKKKKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDSDIEMYEEASL  310 (351)
T ss_pred             HHhhccCcCCCCccccccccccccccccccccccccccccccccCCccchhhcccCccccccccccCChhhccccccccc
Confidence            67999984 99999   9999999   9976542       12589999986 999999999999982            


Q ss_pred             --CCCCCccccccCCCCCCCCCCCCCCCCC
Q 002804          527 --SKYPCENFVAKGFCNRGDNCLFSHKLPP  554 (879)
Q Consensus       527 --stipCkfF~~~G~C~rGdsCrFaH~~~~  554 (879)
                        ..-+|+.|..+|.|+.|..|.+.|...-
T Consensus       311 ~y~~~~crt~~~~g~~p~g~~~c~~~dkkn  340 (351)
T COG5063         311 GYLDGPCRTRAKGGAFPSGGAVCKSFDKKN  340 (351)
T ss_pred             cccccccccccccCccCCCCchhhccccch
Confidence              1346999998999999988999998754

>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]

Probab=97.53  E-value=3.3e-05  Score=84.33  Aligned_cols=51  Identities=35%  Similarity=0.754  Sum_probs=44.0

Q ss_pred             ccccccccCCCCCCCC-CCCCCCCC--------CCCCccccccCCCCCCCCCCCCCCCCCCC
Q 002804          504 KACCHFARNSCMKGDN-CPFDHDLS--------KYPCENFVAKGFCNRGDNCLFSHKLPPKE  556 (879)
Q Consensus       504 ~~Ck~FlkGsCk~GD~-CpFsH~ls--------tipCkfF~~~G~C~rGdsCrFaH~~~~~~  556 (879)
                      .+|+.|++|.|.+|+. |+|+|...        -+-|.+|+ +|.|.+. +|+|.|.....+
T Consensus        38 eVCReF~rn~C~R~d~~CkfaHP~~~~~V~~g~v~aC~Ds~-kgrCsR~-nCkylHpp~hlk   97 (331)
T KOG2494|consen   38 EVCREFLRNTCSRGDRECKFAHPPKNCQVSNGRVIACFDSQ-KGRCSRE-NCKYLHPPQHLK   97 (331)
T ss_pred             HHHHHHHhccccCCCccccccCCCCCCCccCCeEEEEeccc-cCccCcc-cceecCCChhhh
Confidence            5999999999999997 99999853        23499999 8999995 899999987654

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.30  E-value=5.7e-05  Score=55.04  Aligned_cols=23  Identities=43%  Similarity=1.193  Sum_probs=16.7

Q ss_pred             cccccccc-cCCCCCCCCCCCCCC
Q 002804          474 KYCHHYLK-GRCQEGDKCKFSHDT  496 (879)
Q Consensus       474 ~VCrfFlr-G~C~KGdkCkFSHD~  496 (879)
                      .+|++|++ |.|.+|+.|+|+|+.
T Consensus         4 ~~C~~f~~~g~C~~G~~C~f~H~~   27 (27)
T PF00642_consen    4 KLCRFFMRTGTCPFGDKCRFAHGE   27 (27)
T ss_dssp             SB-HHHHHTS--TTGGGSSSBSSG
T ss_pred             ccChhhccCCccCCCCCcCccCCC
Confidence            78888886 889999999998873

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=97.12  E-value=0.0074  Score=69.93  Aligned_cols=56  Identities=27%  Similarity=0.464  Sum_probs=38.6

Q ss_pred             CCCCCccccccCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccc
Q 002804          527 SKYPCENFVAKGFCNRGDNCLFSHKLPPKEQDPP--TPSTCTPELKPSPPLYASNLLKPLNNNKVSHQNVD  595 (879)
Q Consensus       527 stipCkfF~~~G~C~rGdsCrFaH~~~~~~~lP~--as~vCtp~Lkg~SpsssS~~~~pl~~q~~sSh~~k  595 (879)
                      +-.+|..|. +|.|.+||.|-|.|..-+--.-|.  .+..|.+        +   +.|++ .-|||.|-..
T Consensus       235 s~tpCPefr-kG~C~rGD~CEyaHgvfEcwLHPa~YRT~~CkD--------g---~~C~R-rvCfFAH~~e  292 (528)
T KOG1595|consen  235 SSTPCPEFR-KGSCERGDSCEYAHGVFECWLHPARYRTRKCKD--------G---GYCPR-RVCFFAHSPE  292 (528)
T ss_pred             cCccCcccc-cCCCCCCCccccccceehhhcCHHHhccccccC--------C---CCCcc-ceEeeecChH
Confidence            467899998 799999999999999876332221  1234543        2   55666 7788887554

>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]

Probab=97.05  E-value=0.0013  Score=71.72  Aligned_cols=52  Identities=35%  Similarity=0.785  Sum_probs=46.1

Q ss_pred             cccccccc-CCCCC---CCCCCCC---CCC------------CCCCCccccccCCCCCCCCCCCCCCCCCC
Q 002804          504 KACCHFAR-NSCMK---GDNCPFD---HDL------------SKYPCENFVAKGFCNRGDNCLFSHKLPPK  555 (879)
Q Consensus       504 ~~Ck~Flk-GsCk~---GD~CpFs---H~l------------stipCkfF~~~G~C~rGdsCrFaH~~~~~  555 (879)
                      .+|..|.. |.|..   |+.|.|+   |.+            ++.||..|...|+|+.|.+|.|.|.-...
T Consensus       231 ~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~k~k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~~  301 (351)
T COG5063         231 ELCESFTRKGTCPYWISGVKCQFACRGHGLNELKSKKKKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDSD  301 (351)
T ss_pred             HHhhccCcCCCCccccccccccccccccccccccccccccccccCCccchhhcccCccccccccccCChhh
Confidence            58999964 99999   9999999   884            46799999999999999999999997764

>smart00356 ZnF_C3H1 zinc finger

Probab=96.99  E-value=0.00048  Score=48.69  Aligned_cols=22  Identities=41%  Similarity=1.126  Sum_probs=16.6

Q ss_pred             cccccccccCCCCCCCCCCCCC
Q 002804          474 KYCHHYLKGRCQEGDKCKFSHD  495 (879)
Q Consensus       474 ~VCrfFlrG~C~KGdkCkFSHD  495 (879)
                      .+|++|..|.|.+|+.|+|+|+
T Consensus         5 ~~C~~~~~g~C~~g~~C~~~H~   26 (27)
T smart00356        5 ELCKFFKRGYCPYGDRCKFAHP   26 (27)
T ss_pred             CcCcCccCCCCCCCCCcCCCCc
Confidence            5677777777777777777776

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.65  E-value=0.00039  Score=50.71  Aligned_cols=23  Identities=39%  Similarity=0.850  Sum_probs=10.5

Q ss_pred             CCCccccccCCCCCCCCCCCCCC
Q 002804          529 YPCENFVAKGFCNRGDNCLFSHK  551 (879)
Q Consensus       529 ipCkfF~~~G~C~rGdsCrFaH~  551 (879)
                      .+|++|...|.|++|+.|+|.|.
T Consensus         4 ~~C~~f~~~g~C~~G~~C~f~H~   26 (27)
T PF00642_consen    4 KLCRFFMRTGTCPFGDKCRFAHG   26 (27)
T ss_dssp             SB-HHHHHTS--TTGGGSSSBSS
T ss_pred             ccChhhccCCccCCCCCcCccCC
Confidence            34555554455555555555553

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>smart00356 ZnF_C3H1 zinc finger

Probab=96.01  E-value=0.0042  Score=43.86  Aligned_cols=22  Identities=41%  Similarity=0.907  Sum_probs=14.7

Q ss_pred             ccccccccCCCCCCCCCCCCCC
Q 002804          504 KACCHFARNSCMKGDNCPFDHD  525 (879)
Q Consensus       504 ~~Ck~FlkGsCk~GD~CpFsH~  525 (879)
                      .+|++|..|.|.+|+.|+|+|.
T Consensus         5 ~~C~~~~~g~C~~g~~C~~~H~   26 (27)
T smart00356        5 ELCKFFKRGYCPYGDRCKFAHP   26 (27)
T ss_pred             CcCcCccCCCCCCCCCcCCCCc
Confidence            4677666666777667777664

>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]

Probab=95.63  E-value=0.0041  Score=71.54  Aligned_cols=58  Identities=31%  Similarity=0.706  Sum_probs=36.8

Q ss_pred             ccccccccc---CCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCC
Q 002804          474 KYCHHYLKG---RCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFVAKGFCNRGDNCLFSH  550 (879)
Q Consensus       474 ~VCrfFlrG---~C~KGdkCkFSHD~splrK~t~~Ck~FlkGsCk~GD~CpFsH~lstipCkfF~~~G~C~rGdsCrFaH  550 (879)
                      .+|.-..+|   .|.+|++|+|-||...-          +.   .++++       -...|..|...|+|++|-.|+|.-
T Consensus        77 ~LCPsli~g~~~~C~f~d~Crf~HDi~ay----------La---tK~~D-------ig~~Cp~f~s~G~Cp~G~~CRFl~  136 (614)
T KOG2333|consen   77 RLCPSLIQGDISKCSFGDNCRFVHDIEAY----------LA---TKAPD-------IGPSCPVFESLGFCPYGFKCRFLG  136 (614)
T ss_pred             ccChHhhcCCCccCcccccccccccHHHH----------Hh---ccCcc-------cCCccceeeccccCCccceeehhh
Confidence            778777765   57778888888876421          10   00000       012477788888999998999864


Q ss_pred             C
Q 002804          551 K  551 (879)
Q Consensus       551 ~  551 (879)
                      .
T Consensus       137 a  137 (614)
T KOG2333|consen  137 A  137 (614)
T ss_pred             c
Confidence            3

>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]

Probab=95.62  E-value=0.0034  Score=72.18  Aligned_cols=25  Identities=36%  Similarity=0.837  Sum_probs=19.9

Q ss_pred             ccccccccC---CCCCCCCCCCCCCCCC
Q 002804          504 KACCHFARN---SCMKGDNCPFDHDLSK  528 (879)
Q Consensus       504 ~~Ck~FlkG---sCk~GD~CpFsH~lst  528 (879)
                      .+|+....|   .|.+|++|+|.|+...
T Consensus        77 ~LCPsli~g~~~~C~f~d~Crf~HDi~a  104 (614)
T KOG2333|consen   77 RLCPSLIQGDISKCSFGDNCRFVHDIEA  104 (614)
T ss_pred             ccChHhhcCCCccCcccccccccccHHH
Confidence            577777765   5999999999999643

>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]

Probab=94.80  E-value=0.015  Score=65.86  Aligned_cols=25  Identities=48%  Similarity=1.006  Sum_probs=14.2

Q ss_pred             CCCCccccccCCCCCCCCCCCCCCCC
Q 002804          528 KYPCENFVAKGFCNRGDNCLFSHKLP  553 (879)
Q Consensus       528 tipCkfF~~~G~C~rGdsCrFaH~~~  553 (879)
                      ..||.||+ .|.|+++.+|+|.|...
T Consensus       140 MkpC~ffL-eg~CRF~enCRfSHG~~  164 (486)
T KOG2185|consen  140 MKPCKFFL-EGRCRFGENCRFSHGLD  164 (486)
T ss_pred             hccchHhh-ccccccCcccccccCcc
Confidence            34566665 55666665566666544

>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]

Probab=93.50  E-value=0.029  Score=63.59  Aligned_cols=24  Identities=46%  Similarity=1.147  Sum_probs=13.5

Q ss_pred             ccccccccccCCCCCCCCCCCCCC
Q 002804          473 VKYCHHYLKGRCQEGDKCKFSHDT  496 (879)
Q Consensus       473 ~~VCrfFlrG~C~KGdkCkFSHD~  496 (879)
                      +.+|.||+.|.|+.|.+|+|+|..
T Consensus       140 MkpC~ffLeg~CRF~enCRfSHG~  163 (486)
T KOG2185|consen  140 MKPCKFFLEGRCRFGENCRFSHGL  163 (486)
T ss_pred             hccchHhhccccccCcccccccCc
Confidence            345555555555555555555554

>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type

Probab=92.34  E-value=0.082  Score=36.20  Aligned_cols=17  Identities=47%  Similarity=1.118  Sum_probs=10.4

Q ss_pred             cccccccCCCCCCCCCCCC
Q 002804          476 CHHYLKGRCQEGDKCKFSH  494 (879)
Q Consensus       476 CrfFlrG~C~KGdkCkFSH  494 (879)
                      |+||..  |.+|+.|.|+|
T Consensus         2 Ck~~~~--C~~~~~C~f~H   18 (19)
T PF14608_consen    2 CKFGPN--CTNGDNCPFSH   18 (19)
T ss_pred             CcCcCC--CCCCCcCccCC
Confidence            665543  66666666666

>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type

Probab=91.32  E-value=0.14  Score=35.07  Aligned_cols=19  Identities=53%  Similarity=1.071  Sum_probs=11.4

Q ss_pred             CCccccccCCCCCCCCCCCCCC
Q 002804          530 PCENFVAKGFCNRGDNCLFSHK  551 (879)
Q Consensus       530 pCkfF~~~G~C~rGdsCrFaH~  551 (879)
                      +|+||..   |++++.|.|.|.
T Consensus         1 ~Ck~~~~---C~~~~~C~f~HP   19 (19)
T PF14608_consen    1 PCKFGPN---CTNGDNCPFSHP   19 (19)
T ss_pred             CCcCcCC---CCCCCcCccCCc
Confidence            3665542   666666666663

>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]

Probab=88.62  E-value=0.79  Score=55.01  Aligned_cols=22  Identities=27%  Similarity=0.653  Sum_probs=15.5

Q ss_pred             cccccccccCCCCCCCCCCCCCCCC
Q 002804          474 KYCHHYLKGRCQEGDKCKFSHDTVP  498 (879)
Q Consensus       474 ~VCrfFlrG~C~KGdkCkFSHD~sp  498 (879)
                      ..|.||.  .|. +..|.|.|...+
T Consensus       545 ~~Cky~~--~Ct-~a~Ce~~HPtaa  566 (681)
T KOG3702|consen  545 TRCKYGP--ACT-SAECEFAHPTAA  566 (681)
T ss_pred             ccccCCC--cCC-chhhhhcCCcch
Confidence            5577774  466 578888888765

>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]

Probab=87.39  E-value=1.2  Score=53.42  Aligned_cols=66  Identities=21%  Similarity=0.392  Sum_probs=38.3

Q ss_pred             cccccccc---cCC------CCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCC-----------------
Q 002804          474 KYCHHYLK---GRC------QEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLS-----------------  527 (879)
Q Consensus       474 ~VCrfFlr---G~C------~KGdkCkFSHD~splrK~t~~Ck~FlkGsCk~GD~CpFsH~ls-----------------  527 (879)
                      ..|.|+..   +.|      ..+..|.|+|..         |++=.  .|.. .+|.|.|...                 
T Consensus       556 a~Ce~~HPtaa~~~~s~p~k~fa~~~~ks~p~---------Ck~~~--kCta-sDC~~sH~~~~~pvq~t~ip~~~~~~t  623 (681)
T KOG3702|consen  556 AECEFAHPTAAENAKSLPNKKFASKCLKSHPG---------CKFGK--KCTA-SDCNYSHAGRRIPVQPTRIPPPFPGGT  623 (681)
T ss_pred             hhhhhcCCcchhhhhccccccccccceecccc---------ccccc--cccc-ccCcccccCCCCCCccccCCCCCCCCC
Confidence            66666642   333      455555555544         33222  3655 6777777632                 


Q ss_pred             -CCCCccccccCCCCCCCCCCCCCCCCCC
Q 002804          528 -KYPCENFVAKGFCNRGDNCLFSHKLPPK  555 (879)
Q Consensus       528 -tipCkfF~~~G~C~rGdsCrFaH~~~~~  555 (879)
                       ..+|+||-   .|.+- .|+|.|...+.
T Consensus       624 i~~~CrY~p---nCrnm-~C~F~HPk~cR  648 (681)
T KOG3702|consen  624 IRGLCRYRP---NCRNM-QCKFYHPKTCR  648 (681)
T ss_pred             ccccceecc---CcCCc-cccccCCcccc
Confidence             23477654   48874 89999988873

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=84.68  E-value=0.47  Score=50.05  Aligned_cols=30  Identities=37%  Similarity=0.846  Sum_probs=24.8

Q ss_pred             cCCCcccccccccc-cCCCCCCCCCCCCCCCC
Q 002804          468 LKPKTVKYCHHYLK-GRCQEGDKCKFSHDTVP  498 (879)
Q Consensus       468 ~DPKs~~VCrfFlr-G~C~KGdkCkFSHD~sp  498 (879)
                      .|-.. .||+-|.. |.|-+|+.|+|+|+...
T Consensus       137 iD~qp-dVCKdyk~TGYCGYGDsCKflH~R~D  167 (259)
T COG5152         137 IDTQP-DVCKDYKETGYCGYGDSCKFLHDRSD  167 (259)
T ss_pred             eecCc-ccccchhhcccccCCchhhhhhhhhh
Confidence            44444 78999985 99999999999999764

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=81.08  E-value=0.59  Score=52.60  Aligned_cols=24  Identities=42%  Similarity=0.912  Sum_probs=23.2

Q ss_pred             cccccccccCCCCCCCCCCCCCCC
Q 002804          474 KYCHHYLKGRCQEGDKCKFSHDTV  497 (879)
Q Consensus       474 ~VCrfFlrG~C~KGdkCkFSHD~s  497 (879)
                      .+|+||.+|.|+.|+.|+|+|...
T Consensus         9 tic~~~~~g~c~~g~~cr~~h~~~   32 (344)
T KOG1039|consen    9 TICKYYQKGNCKFGDLCRLSHSLP   32 (344)
T ss_pred             hhhhhcccccccccceeeeeccCc
Confidence            789999999999999999999987

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	879
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	2e-16
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	3e-12
2rhk_C	72	Cleavage and polyadenylation specificity factor su	8e-15
2rhk_C	72	Cleavage and polyadenylation specificity factor su	6e-13
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	9e-15
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	7e-13
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	1e-10
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	6e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	1e-06
3u9g_A	229	Zinc finger CCCH-type antiviral protein 1; zinc fi	3e-06
3u9g_A	229	Zinc finger CCCH-type antiviral protein 1; zinc fi	4e-05
2lhn_A	80	Nuclear polyadenylated RNA-binding protein NAB2; n	6e-05
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	1e-04
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	1e-04
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	2e-04

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98

 Score = 74.4 bits (182), Expect = 2e-16
 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 2/81 (2%)

Query: 493 SHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFVAKGFCNRGDNCLFSHKL 552
           S  +  L K  + C  +    C + +NCP+ H    +PC+ +   G C  GD+C+FSH  
Sbjct: 3   SGSSGELPKKRELCKFYITGFCARAENCPYMHG--DFPCKLYHTTGNCINGDDCMFSHDP 60

Query: 553 PPKEQDPPTPSTCTPELKPSP 573
             +E           + +   
Sbjct: 61  LTEETRELLDKMLADDAEAGA 81

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98

 Score = 62.4 bits (151), Expect = 3e-12
 Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 11/79 (13%)

Query: 469 KPKTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFA-RNSCMKGDNCPFDHDLS 527
            PK  + C  Y+ G C   + C + H   P       C  +    +C+ GD+C F HD  
Sbjct: 9   LPKKRELCKFYITGFCARAENCPYMHGDFP-------CKLYHTTGNCINGDDCMFSHDPL 61

Query: 528 KY---PCENFVAKGFCNRG 543
                   + +       G
Sbjct: 62  TEETRELLDKMLADDAEAG 80

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72

 Score = 69.1 bits (169), Expect = 8e-15
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 466 QNLKPKTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDH 524
            ++  +    C H+L+G C++GD+C+F H+          C  +++        CPF H
Sbjct: 9   SHMSGEKTVVCKHWLRGLCKKGDQCEFLHEYDM--TKMSECYFYSKFGECSNKECPFLH 65

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72

 Score = 63.7 bits (155), Expect = 6e-13
 Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 4/69 (5%)

Query: 491 KFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKY---PCENFVAKGFCNRGDNCL 547
              H +    + T  C H+ R  C KGD C F H+        C  +   G C+    C 
Sbjct: 4   HHHHHSHMSGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMSECYFYSKFGECS-NKECP 62

Query: 548 FSHKLPPKE 556
           F H  P  +
Sbjct: 63  FLHIDPESK 71

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77

 Score = 69.2 bits (169), Expect = 9e-15
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 476 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDH 524
           C H+L+G C++GD+C+F H+          C  +++        CPF H
Sbjct: 13  CKHWLRGLCKKGDQCEFLHEYDM--TKMPECYFYSKFGECSNKECPFLH 59

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77

 Score = 63.8 bits (155), Expect = 7e-13
 Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 4/60 (6%)

Query: 501 KSTKACCHFARNSCMKGDNCPFDHDLSKY---PCENFVAKGFCNRGDNCLFSHKLPPKEQ 557
           + T  C H+ R  C KGD C F H+        C  +   G C     C F H  P  + 
Sbjct: 8   EKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGEC-SNKECPFLHIDPESKI 66

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 57.7 bits (139), Expect = 1e-10
 Identities = 21/89 (23%), Positives = 30/89 (33%), Gaps = 20/89 (22%)

Query: 463 KLPQNLKPKTVKYCHHYLK-GRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCP 521
            +  + + KT + C  Y + GRC+ G KC+F+H    L                      
Sbjct: 3   HMTTSSRYKT-ELCRTYSESGRCRYGAKCQFAHGLGEL------------------RQAN 43

Query: 522 FDHDLSKYPCENFVAKGFCNRGDNCLFSH 550
                    C  F  +G C  G  C F H
Sbjct: 44  RHPKYKTELCHKFKLQGRCPYGSRCHFIH 72

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 38.4 bits (89), Expect = 6e-04
 Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 3/43 (6%)

Query: 527 SKY---PCENFVAKGFCNRGDNCLFSHKLPPKEQDPPTPSTCT 566
           S+Y    C  +   G C  G  C F+H L    Q    P   T
Sbjct: 8   SRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYKT 50

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.6 bits (138), Expect = 2e-08
 Identities = 74/559 (13%), Positives = 148/559 (26%), Gaps = 163/559 (29%)

Query: 86  DAQIVLDEIQDILQVEENGNLLKQELAVCDGDYETGN---FDEGLGQQRMLMDE-LEHIL 141
           D + V D  + IL  EE  +++         D  +G    F   L +Q  ++ + +E +L
Sbjct: 34  DCKDVQDMPKSILSKEEIDHIIMS------KDAVSGTLRLFWTLLSKQEEMVQKFVEEVL 87

Query: 142 KGD-------------------VIFVHEEDALVNDRQE----HVDIQQIVNVESRSEAEL 178
           + +                    +++ + D L ND Q     +V   Q      ++  EL
Sbjct: 88  RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147

Query: 179 QVDK----------GDSNLDVPKSFDSSVDRNMD--------SHASKPAEDSEERNS--- 217
           +  K          G + + +       V   MD         + + P    E       
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207

Query: 218 ----KLRTNSLEFENEMQQKEMEEEKLVHTNGIIGAHDH-RAEDV--EVEEGEISGHFEV 270
                  + S    N   +    + +L     ++ +  +     V   V+  +    F +
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAEL---RRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264

Query: 271 D--------EVSIDMIIDNAVVSNEKKEDEEQVSKDVTDKTDFPCNEKCGGTEKFSDSTS 322
                          + D    +       +  S  +T                  +  S
Sbjct: 265 SCKILLTTRFKQ---VTDFLSAATTTHISLDHHSMTLTP----------------DEVKS 305

Query: 323 VCLNAVDHNASGGTVELQETVRNETQCKT-----KIFADGTATMAIDPDRYNSMPGVGRN 377
           + L  +D        +L   V       T      I A    ++      +++   V  +
Sbjct: 306 LLLKYLDCRPQ----DLPREV-----LTTNPRRLSIIA---ESIRDGLATWDNWKHVNCD 353

Query: 378 KRKASRGEEGISSFSASLDDSTVQK---------EVVKQRVTQEQGITTK------DKLD 422
           K         I S    L+ +  +K                     I T         + 
Sbjct: 354 KLTTI-----IESSLNVLEPAEYRKMFDRLSVFPPSAH--------IPTILLSLIWFDVI 400

Query: 423 SGAC----NK-RKRSALSKEKKAK---------KKQKERKKRAEKNRQLGVRRLKLPQNL 468
                   NK  K S + K+ K           + + + +     +R + V    +P+  
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI-VDHYNIPKTF 459

Query: 469 KPKTVK--------YCH--HYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGD 518
               +         Y H  H+LK          F    +      +   H +      G 
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS 519

Query: 519 NCPFDHDLSKYPCENFVAK 537
                  L  Y  + ++  
Sbjct: 520 ILNTLQQLKFY--KPYICD 536

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 1e-07
 Identities = 61/421 (14%), Positives = 130/421 (30%), Gaps = 137/421 (32%)

Query: 5   ERSQVETTSFCFSPHRHLKSETYRALVQILSHCYDHSQISAAQDSRP-------GMCGSG 57
           +R ++   +  F+ +   + + Y  L Q L             + RP       G+ GSG
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQAL------------LELRPAKNVLIDGVLGSG 162

Query: 58  E--LVGPNAAVVDNSLAEKDKAGDEDRW--FGDAQIVLDEIQDILQVEENGNLLKQELAV 113
           +  +    A  V  S   + K   +  W    +     + + ++LQ      LL Q    
Sbjct: 163 KTWV----ALDVCLSYKVQCKMDFKIFWLNLKNCNSP-ETVLEMLQ-----KLLYQ---- 208

Query: 114 CDGDYETGNFDEGLGQQRMLMDELEHILKGDVIFVHE--EDAL-----VNDRQ--EHVDI 164
            D ++ + +  +     ++ +  ++  L+   +   +  E+ L     V + +     ++
Sbjct: 209 IDPNWTSRS--DHSSNIKLRIHSIQAELRR--LLKSKPYENCLLVLLNVQNAKAWNAFNL 264

Query: 165 Q-QIVNVESRSEAELQVDKGDSN-LDVPKSFDSSVDRNMDSHASKPAEDSEERNSKLRTN 222
             +I+ + +R        K  ++ L    +   S+D     H S      E         
Sbjct: 265 SCKIL-LTTR-------FKQVTDFLSAATTTHISLD-----HHSMTLTPDE--------- 302

Query: 223 SLE-FEN--EMQQKEM-EEEKLVH--TNGIIGA--HDHRA------------------ED 256
                    + + +++  E    +     II     D  A                    
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362

Query: 257 VEV-EEGEISGHFEVDEVSI---DMIIDNAVVS----NEKKEDEEQVSKDVTDKTDFPCN 308
           + V E  E    F+   +S+      I   ++S    +  K D   V   +   +     
Sbjct: 363 LNVLEPAEYRKMFD--RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV--- 417

Query: 309 EKCGGTEKFSDSTSVCLNAVDHNASGGTVELQETVRNETQCKTKIFADGTATMAIDPDRY 368
                 EK    +++ + ++        +EL+  + NE      I            D Y
Sbjct: 418 ------EKQPKESTISIPSIY-------LELKVKLENEYALHRSIV-----------DHY 453

Query: 369 N 369
           N
Sbjct: 454 N 454

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A Length = 70

 Score = 45.8 bits (108), Expect = 1e-06
 Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 7/62 (11%)

Query: 469 KPKTVKYCHHYLKGRCQEGD-KCKFSHDTVPLTK-----STKACCHFARNSCMKGDNCPF 522
           +   ++ C  Y +G C  G+  C+F+H            +   C  + +  C + + C +
Sbjct: 2   RTDRLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSR-EKCKY 60

Query: 523 DH 524
            H
Sbjct: 61  FH 62

>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus} Length = 229

 Score = 48.2 bits (114), Expect = 3e-06
 Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 12/86 (13%)

Query: 476 CHHYLKGRCQ----EGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDH--DLSKY 529
           C   L GRC     + + CK+SHD +          H       + +        D    
Sbjct: 92  CKLNLLGRCHYAQSQRNLCKYSHDVLSEQNFQILKNHELSGLN-QEELACLLVQSDPFFL 150

Query: 530 P--CENFVA---KGFCNRGDNCLFSH 550
           P  C+++     K  C +   C   H
Sbjct: 151 PEICKSYKGEGRKQTCGQPQPCERLH 176

>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus} Length = 229

 Score = 45.1 bits (106), Expect = 4e-05
 Identities = 22/112 (19%), Positives = 35/112 (31%), Gaps = 19/112 (16%)

Query: 424 GACN----KRKRSALSKEKKAKKKQKERKKRAEKNRQLGVRRLKLPQNLKPKTVKYCHHY 479
           G C+    +R     S +  +++  +  K               L Q+      + C  Y
Sbjct: 98  GRCHYAQSQRNLCKYSHDVLSEQNFQILKNHELSGLNQEELACLLVQSDPFFLPEICKSY 157

Query: 480 ----LKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLS 527
                K  C +   C+  H           C HF R +C    NC   H+L 
Sbjct: 158 KGEGRKQTCGQPQPCERLH----------ICEHFTRGNC-SYLNCLRSHNLM 198

>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C} Length = 80

 Score = 41.5 bits (97), Expect = 6e-05
 Identities = 15/58 (25%), Positives = 19/58 (32%), Gaps = 7/58 (12%)

Query: 497 VPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFVAKGFCNRGDNCLFSHKLPP 554
           +   KS + C       C     C + H  S   C        C R D CLF H +  
Sbjct: 3   LGSEKSLEQCKFGTH--C-TNKRCKYRHARSHIMCREGAN---CTRID-CLFGHPINE 53

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens} Length = 89

 Score = 41.0 bits (95), Expect = 1e-04
 Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 463 KLPQNLKPKTVKYCHHYLKGRCQEGDK-CKFSHD--TVPLTKSTKACCHFARNSCMKGDN 519
              ++ K  T++ C  + +G C   D+ CKF+H   +  +       C  +       +N
Sbjct: 7   GPVRDTKWLTLEVCRQFQRGTCSRSDEECKFAHPPKSCQVENGRVIACFDSLKGRCSREN 66

Query: 520 CPFDHD 525
           C + H 
Sbjct: 67  CKYLHP 72

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens} Length = 83

 Score = 40.5 bits (94), Expect = 1e-04
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 472 TVKYCHHYLKGRCQEGD-KCKFSH--DTVPLTKSTKACCHFARNSCMKGDNCPFDH 524
           T++ C  + +G C   D +CKF+H   +  +       C  +       +NC + H
Sbjct: 8   TLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGRCSRENCKYLH 63

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 98

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 7/67 (10%)

Query: 465 PQNLKPKTVKYCHHYLKGRCQEGD-KCKFSHDTVPLTK-----STKACCHFARNSCMKGD 518
            + L+   ++ C  + +G C  G+  C+F+H            +   C  + +  CM+ +
Sbjct: 12  QKLLRTDKLEVCREFQRGNCARGETDCRFAHPADSTMIDTSDNTVTVCMDYIKGRCMR-E 70

Query: 519 NCPFDHD 525
            C + H 
Sbjct: 71  KCKYFHP 77

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	879
d1rgoa1	36	g.66.1.1 (A:151-186) Butyrate response factor 2 (T	5e-04
d1m9oa_	40	g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475	7e-04
d1rgoa2	34	g.66.1.1 (A:187-220) Butyrate response factor 2 (T	0.002
d2cqea1	56	g.66.1.1 (A:458-513) Zinc finger CCCH domain-conta	0.003

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (84), Expect = 5e-04
 Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 3/27 (11%)

Query: 527 SKY---PCENFVAKGFCNRGDNCLFSH 550
           ++Y    C  F   G C  G+ C F+H
Sbjct: 2   TRYKTELCRPFEESGTCKYGEKCQFAH 28

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.9 bits (83), Expect = 7e-04
 Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 3/27 (11%)

Query: 527 SKY---PCENFVAKGFCNRGDNCLFSH 550
           S+Y    C  +   G C  G  C F+H
Sbjct: 5   SRYKTELCRTYSESGRCRYGAKCQFAH 31

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 34

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (80), Expect = 0.002
 Identities = 9/21 (42%), Positives = 9/21 (42%)

Query: 530 PCENFVAKGFCNRGDNCLFSH 550
            C  F   GFC  G  C F H
Sbjct: 10  LCRTFHTIGFCPYGPRCHFIH 30

>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (79), Expect = 0.003
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)

Query: 479 YLKGRCQEGDKCKFSHDTVPLTKSTK 504
           +  G C  GD C FSHD  PLT+ T+
Sbjct: 7   HTTGNCINGDDCMFSHD--PLTEETR 30

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	879
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	96.14
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	96.04
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	95.4
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	95.1
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	94.73
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	94.03
d1rgoa2	34	Butyrate response factor 2 (Tis11D) {Human (Homo s	93.84
d2cqea1	56	Zinc finger CCCH domain-containing protein C19orf7	93.74
d1rgoa2	34	Butyrate response factor 2 (Tis11D) {Human (Homo s	93.28
d2cqea1	56	Zinc finger CCCH domain-containing protein C19orf7	90.79
d2fc6a1	37	Target of EGR1 protein 1, TOE1 {Human (Homo sapien	83.29
d2fc6a1	37	Target of EGR1 protein 1, TOE1 {Human (Homo sapien	80.2

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.14  E-value=0.0014  Score=39.21  Aligned_cols=26  Identities=31%  Similarity=0.930  Sum_probs=19.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             77522222231467889999997778
Q 002804          470 PKTVKYCHHYLKGRCQEGDKCKFSHD  495 (879)
Q Consensus       470 PKs~vVCrfFlkG~CkKGdkCkFSHD  495 (879)
                      ||+..+|+||+.|-|.+|++|.|.|.
T Consensus         3 ~kkkelCKfYvqGyCtrgenC~ymH~   28 (29)
T d2cqea2           3 PKKRELCKFYITGFCARAENCPYMHG   28 (29)
T ss_dssp             SCCCSBCTTTTTTCCSCSTTCSSBSS
T ss_pred             CHHHHHHHHHEEEEECCCCCCCCCCC
T ss_conf             14666666320213427767642257

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.04  E-value=0.0018  Score=38.38  Aligned_cols=32  Identities=41%  Similarity=0.871  Sum_probs=21.4

Q ss_pred             CCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCC
Q ss_conf             7775222222314-67889999997778887877
Q 002804          469 KPKTVKYCHHYLK-GRCQEGDKCKFSHDTVPLTK  501 (879)
Q Consensus       469 DPKs~vVCrfFlk-G~CkKGdkCkFSHD~sp~RK  501 (879)
                      .-|+ .+|++|.. |.|.+|+.|.|+|....+|+
T Consensus         6 ~yKT-~lC~~~~~~g~C~~G~~C~FAHg~~ELr~   38 (40)
T d1m9oa_           6 RYKT-ELCRTYSESGRCRYGAKCQFAHGLGELRQ   38 (40)
T ss_dssp             CCCS-CCCSGGGGTSCCTTTTTCSSCSSSCCGGG
T ss_pred             CCCC-CCCHHHHCCCCCCCCCCCCCCCCHHHHCC
T ss_conf             6412-11751335883799897778788777257

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.40  E-value=0.0046  Score=35.63  Aligned_cols=30  Identities=27%  Similarity=0.616  Sum_probs=24.0

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             988872643669899999998999999999
Q 002804          527 SKYPCENFVAKGFCNRGDNCLFSHKLPPKE  556 (879)
Q Consensus       527 ssipCk~Fls~G~CprGdkC~FaH~~p~~k  556 (879)
                      +..+|++|...|.|++|+.|.|+|.....+
T Consensus         8 KT~lC~~~~~~g~C~~G~~C~FAHg~~ELr   37 (40)
T d1m9oa_           8 KTELCRTYSESGRCRYGAKCQFAHGLGELR   37 (40)
T ss_dssp             CSCCCSGGGGTSCCTTTTTCSSCSSSCCGG
T ss_pred             CCCCCHHHHCCCCCCCCCCCCCCCCHHHHC
T ss_conf             121175133588379989777878877725

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.10  E-value=0.0022  Score=37.86  Aligned_cols=30  Identities=37%  Similarity=0.807  Sum_probs=22.0

Q ss_pred             CCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCC
Q ss_conf             77522222231-46788999999777888787
Q 002804          470 PKTVKYCHHYL-KGRCQEGDKCKFSHDTVPLT  500 (879)
Q Consensus       470 PKs~vVCrfFl-kG~CkKGdkCkFSHD~sp~R  500 (879)
                      -|+ .+|++|. .|.|.+|+.|.|+|....+|
T Consensus         4 yKT-~lC~~~~~~g~C~~G~~C~FAHg~~ELr   34 (36)
T d1rgoa1           4 YKT-ELCRPFEESGTCKYGEKCQFAHGFHELR   34 (36)
T ss_dssp             TTS-SBCHHHHHHSCCTTGGGCSSBSSGGGCC
T ss_pred             CCH-HHCCCHHCCCCCCCCCCCCCCCCHHHCC
T ss_conf             653-0275332288479999677868887804

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.73  E-value=0.0076  Score=34.12  Aligned_cols=23  Identities=35%  Similarity=1.012  Sum_probs=14.9

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             888726436698999999989999
Q 002804          528 KYPCENFVAKGFCNRGDNCLFSHK  551 (879)
Q Consensus       528 sipCk~Fls~G~CprGdkC~FaH~  551 (879)
                      +.+|+||. .|||.+|+.|+|.|.
T Consensus         6 kelCKfYv-qGyCtrgenC~ymH~   28 (29)
T d2cqea2           6 RELCKFYI-TGFCARAENCPYMHG   28 (29)
T ss_dssp             CSBCTTTT-TTCCSCSTTCSSBSS
T ss_pred             HHHHHHHE-EEEECCCCCCCCCCC
T ss_conf             66666320-213427767642257

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.03  E-value=0.0042  Score=35.87  Aligned_cols=30  Identities=27%  Similarity=0.645  Sum_probs=23.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             988872643669899999998999999999
Q 002804          527 SKYPCENFVAKGFCNRGDNCLFSHKLPPKE  556 (879)
Q Consensus       527 ssipCk~Fls~G~CprGdkC~FaH~~p~~k  556 (879)
                      ++.+|++|...|.|++|++|.|+|.....+
T Consensus         5 KT~lC~~~~~~g~C~~G~~C~FAHg~~ELr   34 (36)
T d1rgoa1           5 KTELCRPFEESGTCKYGEKCQFAHGFHELR   34 (36)
T ss_dssp             TSSBCHHHHHHSCCTTGGGCSSBSSGGGCC
T ss_pred             CHHHCCCHHCCCCCCCCCCCCCCCCHHHCC
T ss_conf             530275332288479999677868887804

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.84  E-value=0.0069  Score=34.42  Aligned_cols=25  Identities=36%  Similarity=0.915  Sum_probs=15.9

Q ss_pred             CCCCCCCCCCC-CCCCCCCCCCCCCCC
Q ss_conf             75222222314-678899999977788
Q 002804          471 KTVKYCHHYLK-GRCQEGDKCKFSHDT  496 (879)
Q Consensus       471 Ks~vVCrfFlk-G~CkKGdkCkFSHD~  496 (879)
                      |+ .+|++|.. |.|.+|+.|.|+|..
T Consensus         7 KT-~lC~~f~~~g~C~yG~~C~FaHg~   32 (34)
T d1rgoa2           7 KT-ELCRTFHTIGFCPYGPRCHFIHNA   32 (34)
T ss_dssp             TC-SBCHHHHHHSCCTTGGGCSSBCCS
T ss_pred             CC-HHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             14-006164787707989954176888

>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.74  E-value=0.0098  Score=33.37  Aligned_cols=22  Identities=50%  Similarity=1.096  Sum_probs=15.4

Q ss_pred             CCCCCCC-CCCCCCCCCCCCCCC
Q ss_conf             2222314-678899999977788
Q 002804          475 YCHHYLK-GRCQEGDKCKFSHDT  496 (879)
Q Consensus       475 VCrfFlk-G~CkKGdkCkFSHD~  496 (879)
                      +|+||.. +.|..|+.|+|||++
T Consensus         2 PCK~yHtg~kCy~gd~C~FSH~p   24 (56)
T d2cqea1           2 PCKLYHTTGNCINGDDCMFSHDP   24 (56)
T ss_dssp             BCSHHHHTSCCSSCTTCSSBCCC
T ss_pred             CCCEEECCCCCCCCCCCCCCCCC
T ss_conf             86145458720489964012786

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.28  E-value=0.0083  Score=33.87  Aligned_cols=27  Identities=33%  Similarity=0.733  Sum_probs=20.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             988872643669899999998999999
Q 002804          527 SKYPCENFVAKGFCNRGDNCLFSHKLP  553 (879)
Q Consensus       527 ssipCk~Fls~G~CprGdkC~FaH~~p  553 (879)
                      ++.+|++|...|.|++|++|.|+|...
T Consensus         7 KT~lC~~f~~~g~C~yG~~C~FaHg~~   33 (34)
T d1rgoa2           7 KTELCRTFHTIGFCPYGPRCHFIHNAD   33 (34)
T ss_dssp             TCSBCHHHHHHSCCTTGGGCSSBCCSC
T ss_pred             CCHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             140061647877079899541768887

>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.79  E-value=0.036  Score=29.52  Aligned_cols=25  Identities=40%  Similarity=1.034  Sum_probs=18.6

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             8872643669899999998999999
Q 002804          529 YPCENFVAKGFCNRGDNCLFSHKLP  553 (879)
Q Consensus       529 ipCk~Fls~G~CprGdkC~FaH~~p  553 (879)
                      .||+||...+.|-.|++|+|.|.+.
T Consensus         1 FPCK~yHtg~kCy~gd~C~FSH~pL   25 (56)
T d2cqea1           1 FPCKLYHTTGNCINGDDCMFSHDPL   25 (56)
T ss_dssp             SBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred             CCCCEEECCCCCCCCCCCCCCCCCC
T ss_conf             9861454587204899640127865

>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Target of EGR1 protein 1, TOE1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.29  E-value=0.28  Score=23.46  Aligned_cols=24  Identities=42%  Similarity=0.839  Sum_probs=13.1

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             888726436698999999989999
Q 002804          528 KYPCENFVAKGFCNRGDNCLFSHK  551 (879)
Q Consensus       528 sipCk~Fls~G~CprGdkC~FaH~  551 (879)
                      ..+|..|..+|+|++|..|+..|.
T Consensus        13 ~~iC~~FsAyGWCP~G~qCp~SHd   36 (37)
T d2fc6a1          13 TSICDNFSAYGWCPLGPQCPQSHD   36 (37)
T ss_dssp             SCBCSHHHHTCCCTTGGGCSSBCC
T ss_pred             CCHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             446243122041678887866576

>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Target of EGR1 protein 1, TOE1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.20  E-value=0.34  Score=22.92  Aligned_cols=29  Identities=31%  Similarity=0.736  Sum_probs=24.0

Q ss_pred             CCCCCCCCCCCCC-CCCCCCCCCCCCCCCC
Q ss_conf             5777522222231-4678899999977788
Q 002804          468 LKPKTVKYCHHYL-KGRCQEGDKCKFSHDT  496 (879)
Q Consensus       468 ~DPKs~vVCrfFl-kG~CkKGdkCkFSHD~  496 (879)
                      +++....+|..|. .|.|..|.+|+-+|+.
T Consensus         8 ~~~~~~~iC~~FsAyGWCP~G~qCp~SHdi   37 (37)
T d2fc6a1           8 HRPHPTSICDNFSAYGWCPLGPQCPQSHDI   37 (37)
T ss_dssp             CCCCCSCBCSHHHHTCCCTTGGGCSSBCCC
T ss_pred             CCCCCCCHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf             787754462431220416788878665769