Citrus Sinensis ID: 002846

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870----
Protein Sequence
MASSLTVNTLQQQNQLFSLTLCKSSPPTLTVFNFQFLSRFLSSSPPKRTPLLVFKAHVRNTQAKLSTTETEHETSTVTLRTRKGTASGASSLGTRDKRVDSAGEEKDGKRLTKDNNSRKNFAFLKSREMSSGNSSLRSKDKKIGIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTRANSHMNRQNSYSSPKDLQPLDHNKGQASSSTRADAKTKSHSSNDSPSVNTKRPARKMYKNLKNILSASVLSNHQSVLSKIEAAEELGDCVIDFEI
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHcccccccccccccccccHHccccccccccccccccccccHHHHHHHHcccccccHHHHHHHHcccccccccEEHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccEEHHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHccccccccccHHHHccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccccHHHHHHHccccccccccHHHHHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccEEccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccEEEEcccccccccccccHHHHHHHHHHHHHHccccccEEEEEccccccccccccHHHHHHHHHHHHcccEEccccccccHHHHHHHHHccccEEEEcccccccccccccccccHHHccccEEEEEEcccccEEEccccccEEEEEcccccEEEccccccccccccccEEEEEccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHcccccccEHEEEEEEEHHcccccccccccccEEEEEcEEEEEEEEccccccccccccccccccccccccccccccEEEccHHHcccccEEcccccccccEEEEEccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccHHccccccccHHHEEHHHHccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHccccccccccccccHHHccHEEEEccccccEEcccHHHccccccEccccHHHHHHHHHccccccccHHHHHHHHHHccccccccccccHHHHcccHHHHcccccccccHccccccccccEEEEcHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccHHHHHccccccHHHHHHHHHHcccccccccccccccEEEEEEEEcccccccccccEEEEEcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccEEEEccHHHEEccccccHHHHHHHHHHHHHHHHHccccEEEEEcccccccccccHHHHHHHHHHHHcccEEEccccccccHHHHHHHHHcccEEEccHHHHHHHHHHcccHHHHHHHHccEEEEEEEccccEEEccccccEEEEEcccccEEEEccccccccccccEEEEEEEcccccccccccccccccccccccccccccccHHHHccccccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccEEEEEc
Coil and Loop (DISEMBL)
MASSLTVNTLQQQNQLFSltlcksspptltvfNFQFLSrflsssppkrtplLVFKAHVRNTQAKLSTTETEHETSTVTlrtrkgtasgasslgtrdkrvdsageekdgkrltkdnnsrKNFAFLKSRemssgnsslrskdkkigikssKTVNRevdnqkmeqrtndsgqykvrgitdekgskkskkdRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSaavgvvkpaksgsgmrtldTFEVSTmnstelgdsrdmdnngqldygsspmidklesnssyrfddldstfnekenlgqfsnghMKLNSqlldgrsnlergpddqsrkkdwsidnqdadeirLSEDAKKYAFQRGFEIYEKmcldevpmneaSLTAVGRMAMSMGDGDMAFDMVKRMKslginprlrsygpalsvfcnngdvdkacsveehmlehgvypeepeLEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDtmenkgggwhglgwlgkgkwivsHTTVGGDALCKCcgeklaiidldpieteKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAVVDAAnvglysqrnfkpaRVNAVVNGIrqkfpskkwplivlhnrritghkmdqPVNRALIEKWKnadalyatptgsnddWYWLYAAIKFKCLLVTNDEMRDHTFQllgndffprwkerhqvrfsfsdagpefympppcsvviqesekgnwhipiaskqdyddeERRWLCVTRAnshmnrqnsysspkdlqpldhnkgqassstradaktkshssndspsvntkrpaRKMYKNLKNILSASVLSNHQSVLSKIEAAEELgdcvidfei
Flexible Loop (DISEMBL)
MASSLTVNTLQQQNQLFSLTLCKSSPPTLTVFNFQFLSRFLSSSPPKRTPLLVFKAHVRntqaklsttetehetstvtlrtrkgtasgasslgtrdkrvdsageekdgkrltkdnnsrknfaflksremssgnsslrskdkkigikssktvnrevdnqkmeqrtndsgqykvrgitdekgskkskkdrseqfqlrveldmcskrgDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPaksgsgmrtldtFEVSTMNStelgdsrdmdnnGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLergpddqsrkkdwsidnqdadeirlsedaKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKlrtsvrkvspstadVIAKWfnskeaarlgkkkwNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASiaikrernsSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGirqkfpskkwpliVLHNrritghkmdqpVNRALIEKWKNADALYATptgsnddwYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESekgnwhipiaskqdyddeERRWLCVTRanshmnrqnsysspkdlqpldHNKGQAssstradaktkshssndspsvntkrpaRKMYKNLKNILSASVLSNHQSVLSKIEAaeelgdcvidfei
Low Complexity Region (SEG)
MASSltvntlqqqnqlFSLTLCKSSPPTLTVFNFQFLSRFLSSSPPKRTPLLVFKAHVRNTQAKLsttetehetstvtLRTRKGTASGASSLGTRDKRVDSAGEEKDGKRLTKDNNSRKNFAFLKSREMSSGNSSLRskdkkigiksskTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENkgggwhglgwlgkgkwIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTRANSHMNRQNSYSSPKDLQPLDHNKGQASSSTRADAKTKSHSSNDSPSVNTKRPARKMYKNLKNILSASVLSNHQSVLSKIEAAEELGDCVIDFEI
Disordered region (IsUnstruct)
**************QLFSLTLCKSSPPTLTVFNFQFLSRFLS*******PLLVFKAHV****************************************************************************************************************************************RVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVK**********************************************************************************************************************KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVT***************************************************************NILSASVLS***SVLSKIEAAEELGDCVID***
Disordered Region (DISOPRED)
******V*TLQQQNQLFSLTLCKSSPPTLTVFNFQFL******************************************************************************NSRKNFAFLKSREMSSGNSSLRSKDKKIGIKSSKTVNREVDNQKM******************************QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI**ERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRIT**********ALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCV***************************************************************KNILS********SVLSKIEAAEELGDCVIDFEI
Disordered Region (DISEMBL)
*********LQQQNQLFSLTLCKSSPPTLTVFNFQFLSRFLSSSPPKRTPLLVFKAHVRNTQA***********************************************LTKDNNSRKNFAFLKS***************KIGIKSSKTVNREVDNQKMEQRTNDSGQYKVRGIT**************QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNL************WSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTRANSHMNRQNSYSSPKDLQPL*******************************RPARKMYKNLKNILSASVLSNHQSVLSKIEAAEELGDCVIDFEI
Disordered Region (DISPRO)
***SLTVNTLQQQNQLFSLTLCKSSPPTLTVFNFQFLSRFLSSSPPKRTPLLVFKAHVRNTQAKLSTTE************************TRDKRVDSAGEEKDGKRLTKDNNSRKNFAFLKSR**************************************************************EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTRAN*************************************************RPARKMYKNLKNILSASVLSNHQSVLSKIEAAEELGDCVIDFEI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASSLTVNTLQQQNQLFSLTLCKSSPPTLTVFNFQFLSRFLSSSPPKRTPLLVFKAHVRNTQAKLSTTETEHETSTVTLRTRKGTASGASSLGTRDKRVDSAGEEKDGKRLTKDNNSRKNFAFLKSREMSSGNSSLRSKDKKIGIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTRANSHMNRQNSYSSPKDLQPLDHNKGQASSSTRADAKTKSHSSNDSPSVNTKRPARKMYKNLKNILSASVLSNHQSVLSKIEAAEELGDCVIDFEI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	874	2.2.26 [Sep-21-2011]
Q66GI4	572	Proteinaceous RNase P 1,	yes	no	0.482	0.737	0.540	1e-123
F4JKB6	576	Proteinaceous RNase P 3 O	no	no	0.473	0.718	0.468	1e-113
Q680B9	528	Proteinaceous RNase P 2 O	no	no	0.470	0.778	0.453	1e-103
O15091	583	Mitochondrial ribonucleas	yes	no	0.363	0.545	0.219	5e-09
Q8JZY4	584	Mitochondrial ribonucleas	yes	no	0.362	0.542	0.216	3e-06
B5DF07	587	Mitochondrial ribonucleas	yes	no	0.409	0.609	0.210	4e-06
Q9SXD1	630	Pentatricopeptide repeat-	no	no	0.175	0.242	0.259	0.0001
P0C896	576	Pentatricopeptide repeat-	no	no	0.106	0.161	0.268	0.0001
Q9SAD9	517	Pentatricopeptide repeat-	no	no	0.118	0.201	0.25	0.0003
Q9ZUA2	559	Pentatricopeptide repeat-	no	no	0.138	0.216	0.256	0.0004

>sp|Q66GI4|PRRP1_ARATH Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=PRORP1 PE=1 SV=1

 Score =  443 bits (1140), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 229/424 (54%), Positives = 301/424 (70%), Gaps = 2/424 (0%)

Query: 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN 419
           +E +      RGF+I+++M +D+V  NEA+ T   R+A++  D +MAFDMVK+MK+ GI 
Sbjct: 149 TESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ 208

Query: 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479
           PRLRSYGPAL  FC  GD DKA  V+ HM+E  V PEEPEL ALL+VS++    D+VY  
Sbjct: 209 PRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKT 268

Query: 480 LHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGK 539
           L +LR  VR+VS ST D+I +WF S+ A + G KKW+   I+D + + GGGWHG GWLG 
Sbjct: 269 LQRLRDLVRQVSKSTFDMIEEWFKSEVATKTGVKKWDVKKIRDAVVSGGGGWHGQGWLGT 328

Query: 540 GKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWL 599
           GKW V  T +  + +CKCC EKL  ID++P+ETE FA S+  +A +RE  ++F +FQ+WL
Sbjct: 329 GKWNVKRTEMDENGVCKCCKEKLVCIDINPVETETFAASLTRLACEREVKANFNQFQEWL 388

Query: 600 DYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMD 659
           + +GPF+AV+D AN+GL +QR+F   ++N  V   +Q  PSK+ PL++LH  R+ G    
Sbjct: 389 ERHGPFDAVIDGANMGLVNQRSFSFFQLNNTVQRCQQISPSKRLPLVILHKSRVNGGPAT 448

Query: 660 QPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFF 719
            P NRAL+EKWKNA ALYATP GSNDDWYWLYAA+  KCLLVTNDEMRDH FQLLGN FF
Sbjct: 449 YPKNRALLEKWKNAGALYATPPGSNDDWYWLYAAVSCKCLLVTNDEMRDHLFQLLGNSFF 508

Query: 720 PRWKERHQVRFSFS-DAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVT 778
           PRWKE+HQVR S + + G +  MPPP S+VIQESE G WH+P++ + D     R+WLC  
Sbjct: 509 PRWKEKHQVRISVTREDGLKLNMPPPYSIVIQESEDGTWHVPMSVEDDL-QTSRQWLCAK 567

Query: 779 RANS 782
           R+ +
Sbjct: 568 RSKT 571

Arabidopsis thaliana (taxid: 3702)

>sp|F4JKB6|PRRP3_ARATH Proteinaceous RNase P 3 OS=Arabidopsis thaliana GN=PRORP3 PE=1 SV=1

 Score =  409 bits (1052), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/431 (46%), Positives = 276/431 (64%), Gaps = 17/431 (3%)

Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG--INPRLRS 424
           A  RGF+I+++M    +  NE+S+TAV R+A + GDGD AF +VK + ++G    PRLR+
Sbjct: 148 AIDRGFQIFDRMVSSGISPNESSVTAVARLAAAKGDGDYAFKLVKDLVAVGGVSVPRLRT 207

Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
           Y PAL  FC+  + +K   VE+HM   G+  EE E+ ALL+VS   G+ ++VY  L KLR
Sbjct: 208 YAPALLCFCDTLEAEKGYEVEDHMDASGIVLEEAEISALLKVSAATGRENKVYRYLQKLR 267

Query: 485 TSVRKVSPSTADVIAKWFNSKEAARLGKKKWNE--SLIKDTMENKGGGWHGLGWLGKGKW 542
             V  VS  T+  I +WF   +A+ +          L++  +   GGGWHGLGW+G+GKW
Sbjct: 268 ECVGCVSEETSKAIEEWFYGVKASEVSDNGIGSDIELLRAAVLKNGGGWHGLGWVGEGKW 327

Query: 543 IVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKR-------ERNSSFQKF 595
           IV    V     C  C E LA +D + +ETE F  S+ ++A++R       E  + F +F
Sbjct: 328 IVKKGNVSSAGKCLSCDEHLACVDTNEVETEDFVNSLVTLAMERKAKMNSCEPMADFSEF 387

Query: 596 QKWLDYYGPFEAVVDAANVGLYSQR----NFKPARVNAVVNGIRQKFPSKKWPLIVLHNR 651
           Q+WL+ +G +EA++D AN+GLY Q      F   ++ AVV  +  K  SKK PLI+LH +
Sbjct: 388 QEWLEKHGDYEAILDGANIGLYQQNFADGGFSLPQLEAVVKELYNKSGSKKQPLILLHKK 447

Query: 652 RITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTF 711
           R+    ++ P +R L+E+W N + LYATP GSNDDWYWLYAA K KCLLVTNDEMRDH F
Sbjct: 448 RVNA-LLENPNHRNLVEEWINNNVLYATPPGSNDDWYWLYAAAKLKCLLVTNDEMRDHIF 506

Query: 712 QLLGNDFFPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEE 771
           +LL N FF +WKERHQVRF+F     +  MPPP SVVIQESEKG+WH+PI S QD ++  
Sbjct: 507 ELLSNSFFQKWKERHQVRFTFVKGCLKLEMPPPFSVVIQESEKGSWHVPITS-QDKEESL 565

Query: 772 RRWLCVTRANS 782
           R W+C+TR +S
Sbjct: 566 RSWMCITRQSS 576

Endonuclease RNase P responsible for the 5' maturation of tRNA precursors. Also involved in the maturation of mRNA and small nucleolar RNA (snoRNA).

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: 5

>sp|Q680B9|PRRP2_ARATH Proteinaceous RNase P 2 OS=Arabidopsis thaliana GN=PRORP2 PE=1 SV=1

 Score =  375 bits (964), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 194/428 (45%), Positives = 276/428 (64%), Gaps = 17/428 (3%)

Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG--INPRLRS 424
           A  RGFEI+++M    +  NEAS+T+V R+A + G+GD AF +VK   S+G    PRLR+
Sbjct: 89  AIDRGFEIFDRMVSSGISPNEASVTSVARLAAAKGNGDYAFKVVKEFVSVGGVSIPRLRT 148

Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
           Y PAL  FC   + +K   VEEHM   G+  EE E+ ALL+VS   G+ ++VY  LHKLR
Sbjct: 149 YAPALLCFCEKLEAEKGYEVEEHMEAAGIALEEAEISALLKVSAATGRENKVYRYLHKLR 208

Query: 485 TSVRKVSPSTADVIAKWFNSKEAARLGKKKWNE--SLIKDTMENKGGGWHGLGWLGKGKW 542
             V  VS  T  +I +WF  ++A  +G         ++++ + N GGGWHG GW+G+GKW
Sbjct: 209 EYVGCVSEETLKIIEEWFCGEKAGEVGDNGIGSDVGMLREAVLNNGGGWHGHGWVGEGKW 268

Query: 543 IVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKR-------ERNSSFQKF 595
            V    V     C  C E+LA +D + +ET+KF +S+ ++A+ R       E N  F +F
Sbjct: 269 TVKKGNVSSTGRCLSCSEQLACVDTNEVETQKFVDSLVALAMDRKTKMNSCETNVVFSEF 328

Query: 596 QKWLDYYGPFEAVVDAANVGLYSQR----NFKPARVNAVVNGIRQKFPSKKWPLIVLHNR 651
           Q WL+ +G +EA+VD AN+GLY Q     +F  +++ +V+  + ++  + KWPLI+LH R
Sbjct: 329 QDWLEKHGDYEAIVDGANIGLYQQNFVDGSFSLSQLESVMKELYRESGNNKWPLILLHKR 388

Query: 652 RITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTF 711
           R+    ++ P +R L+E+W +   LYATP GSNDDWYWLYAA K KCLLVTNDEMRDH F
Sbjct: 389 RVKT-LLENPTHRNLVEEWISNGVLYATPPGSNDDWYWLYAAAKLKCLLVTNDEMRDHIF 447

Query: 712 QLLGNDFFPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEE 771
           +LLG+ FF +WKERHQVR++F     +  MP P SVVIQESEKG+WH P++ + + ++  
Sbjct: 448 ELLGSTFFQKWKERHQVRYTFVKGNLKLEMPSPFSVVIQESEKGSWHFPVSCENN-EESS 506

Query: 772 RRWLCVTR 779
           R W+C++R
Sbjct: 507 RTWMCISR 514

Endonuclease RNase P responsible for the 5' maturation of tRNA precursors. Also involved in the maturation of mRNA and small nucleolar RNA (snoRNA).

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: 5

>sp|O15091|MRRP3_HUMAN Mitochondrial ribonuclease P protein 3 OS=Homo sapiens GN=KIAA0391 PE=1 SV=2

 Score = 63.9 bits (154), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 84/382 (21%), Positives = 139/382 (36%), Gaps = 64/382 (16%)

Query: 418 INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA---GKGD 474
           I P  ++Y   +     + DV+ A ++ + +L H + P    L+A      +       +
Sbjct: 240 ITPSKKNYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDIKDDNYSN 299

Query: 475 RVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGL 534
           ++  +L  LR +      S A  I  WF S                       G  W G 
Sbjct: 300 KLLDILSYLRNNQLYPGESFAHSIKTWFESVP---------------------GKQWKG- 337

Query: 535 GWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRER 588
                       TTV     C  CG+ +  I L P E E     +    I      ++  
Sbjct: 338 ----------QFTTVRKSGQCSGCGKTIESIQLSPEEYECLKGKIMRDVIDGGDQYRKTT 387

Query: 589 NSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVL 648
               ++F+ ++    PF+ V+D  NV     + F   R + ++  +  +   +   L+VL
Sbjct: 388 PQELKRFENFIKSRPPFDVVIDGLNVA----KMFPKVRESQLLLNVVSQLAKRNLRLLVL 443

Query: 649 HNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEM 706
             R+    +  Q     + E  K A   +A    S DD + LYA +     C  +T D M
Sbjct: 444 -GRKHMLRRSSQWSRDEMEEVQKQASCFFADDI-SEDDPFLLYATLHSGNHCRFITRDLM 501

Query: 707 RDHTFQLL---GNDFFPRWKERHQVRFSFSDAGPEFYMPPPCSV-VIQESEKGNWHIPIA 762
           RDH   L        F +W++ HQ+       G +       S   + ++   +WHIP  
Sbjct: 502 RDHKACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQRILSYDTVVQTTGDSWHIPY- 560

Query: 763 SKQDYDDEER-------RWLCV 777
              D D  ER       +WLC+
Sbjct: 561 ---DEDLVERCSCEVPTKWLCL 579

Functions in mitochondrial tRNA maturation. Part of mitochondrial ribonuclease P, an enzyme composed of MRPP1/RG9MTD1, MRPP2/HSD17B10 and MRPP3/KIAA0391, which cleaves tRNA molecules in their 5'-ends.

Homo sapiens (taxid: 9606)

>sp|Q8JZY4|MRRP3_MOUSE Mitochondrial ribonuclease P protein 3 OS=Mus musculus GN=Kiaa0391 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 83/383 (21%), Positives = 143/383 (37%), Gaps = 66/383 (17%)

Query: 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK---GDRV 476
           P  ++YG  +     + DV+ A ++ + ++ H + P    L+A      +       D++
Sbjct: 239 PSKKNYGDCIQGALLHQDVNTAWNLYQELIGHNLIPPLETLKAFFDYGKDINDDHYSDKL 298

Query: 477 YYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGW 536
             +L  LR +      S A  I  WF S     +  ++W                     
Sbjct: 299 LDILLYLRNNQLYPGESFAHSIKTWFES-----IPGRQW--------------------- 332

Query: 537 LGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNS 590
             KG++    TT+     C  CG  +  I L P E E   E +    I      K+    
Sbjct: 333 --KGQF----TTIQKSGQCSGCGRTIEPIHLSPEEYEFLKEKIMRDVIDGGDQYKKTTPQ 386

Query: 591 SFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHN 650
             ++F+ +++   PF+ V+D  NV     +  +   +  VV+ + Q+          +  
Sbjct: 387 ELKRFESFVNSCPPFDIVIDGLNVAKMFPKGRESQNLLGVVSQLAQQNLQLL-----VLG 441

Query: 651 RRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRD 708
           R+       Q     + +  K A   +A    S DD + LYA +     C  +T D +RD
Sbjct: 442 RKHMLRPSSQWRKEEMEQVRKQAHCFFADNI-SEDDPFLLYATLNSGNHCKFITKDLLRD 500

Query: 709 HTFQL---LGNDFFPRWKERHQVRF--SFSDAGPEFYMPPPCSVVIQESEKGNWHIPIAS 763
           H   L        F +W++ HQ+     F  +   F        V+Q +   +WHIP   
Sbjct: 501 HKACLPDARTQRLFFKWQQGHQLAIMKGFQKSKLTFQHILSYDTVVQRT-GDSWHIPY-- 557

Query: 764 KQDYDDEER-------RWLCVTR 779
             D D  +R       +WLC+ R
Sbjct: 558 --DEDLVQRSSCEVPTKWLCLQR 578

Functions in mitochondrial tRNA maturation. Part of mitochondrial ribonuclease P, an enzyme composed of MRPP1/RG9MTD1, MRPP2/HSD17B10 and MRPP3/KIAA0391, which cleaves tRNA molecules in their 5'-ends.

Mus musculus (taxid: 10090)

>sp|B5DF07|MRRP3_RAT Mitochondrial ribonuclease P protein 3 OS=Rattus norvegicus GN=Mrpp3 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 92/437 (21%), Positives = 166/437 (37%), Gaps = 79/437 (18%)

Query: 372 FEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431
            ++YE M      +     T + R  +       A  +++ +K + + P  ++YG  +  
Sbjct: 195 IDVYEIMKAKYKSLESGGYTLLIRGLIHSDRWREALLLLEDIKKVMV-PSKKNYGDCIQG 253

Query: 432 FCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK-------GDRVYYLLHKLR 484
              + DV+ A S+ + ++ H + P    L   L+   + GK        +++  +L  LR
Sbjct: 254 ALLHQDVNVAWSLYQELVGHNLIP----LLETLKAFFDHGKDMNDDQYSNQLLDILLYLR 309

Query: 485 TSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIV 544
            +      S A  I  WF S     +  ++W                       KG++  
Sbjct: 310 NNQLYPGESFAHSIKTWFES-----IPGRQW-----------------------KGQF-- 339

Query: 545 SHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNSSFQKFQKW 598
             TT+     C  CG  +  I L P E E   E++    I      K+      ++F+++
Sbjct: 340 --TTIQKSGQCSSCGRAIESIHLSPEEYEFLKETIMRDVIDGGDQYKKTTPQELKRFERF 397

Query: 599 LDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKM 658
           +    PF+ V+D  NV     + F   R +  + GI  +   +    +++  R+      
Sbjct: 398 VKSCPPFDIVIDGLNVA----KMFPKGRESQNLLGIVSQLAQQN-LQLLVLGRKHMLRPS 452

Query: 659 DQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIK--FKCLLVTNDEMRDHTFQL--- 713
            Q     + +  K A   +A    S DD + LYA +     C  +T D +RDH   L   
Sbjct: 453 SQWRKDEMEQVRKQAHCFFADNI-SEDDPFLLYATLNSGSHCKFITKDLLRDHKACLPDA 511

Query: 714 LGNDFFPRWKERHQVRFS--FSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDE- 770
                F +W++ HQ+  +  F  +   F        V+Q +    WHIP      YD++ 
Sbjct: 512 RAQRLFFKWQQGHQLAITKGFLKSKLTFQHILSYDTVVQ-TTGDTWHIP------YDEDL 564

Query: 771 --------ERRWLCVTR 779
                     +WLC+ R
Sbjct: 565 VPRSSCEVPTKWLCLQR 581

Functions in mitochondrial tRNA maturation. Part of mitochondrial ribonuclease P, an enzyme composed of MRPP1/RG9MTD1, MRPP2/HSD17B10 and MRPP3/KIAA0391, which cleaves tRNA molecules in their 5'-ends.

Rattus norvegicus (taxid: 10116)

>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 5/158 (3%)

Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
           + G E++ +M    +  N  +   + +     GD DMA ++ K M S G+ P + +Y   
Sbjct: 413 EEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTL 472

Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVR 488
           L   C NG ++KA  V E++    + P       ++    +AGK +  + L   L  S++
Sbjct: 473 LDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNL--SLK 530

Query: 489 KVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMEN 526
            V P   DV+A         R G K+  ++L K+  E+
Sbjct: 531 GVKP---DVVAYNTMISGFCRKGSKEEADALFKEMKED 565

Arabidopsis thaliana (taxid: 3702)

>sp|P0C896|PP209_ARATH Pentatricopeptide repeat-containing protein At3g02650, mitochondrial OS=Arabidopsis thaliana GN=At3g02650 PE=2 SV=1

 Score = 49.3 bits (116), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 43/93 (46%)

Query: 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459
           +G    AFD+  + +  G  P  ++Y   L   C    +D ACSV E ML+ GV  E  +
Sbjct: 244 LGKSKAAFDVFSKTEEFGFTPNAKTYYLTLEALCKRSFMDWACSVCEKMLKSGVLSEGEQ 303

Query: 460 LEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP 492
           +  ++    + GK +  Y +    +T  + + P
Sbjct: 304 MGNIITWFCKEGKAEEAYSVYELAKTKEKSLPP 336

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SAD9|PPR40_ARATH Pentatricopeptide repeat-containing protein At1g13040, mitochondrial OS=Arabidopsis thaliana GN=At1g13040 PE=2 SV=1

 Score = 48.1 bits (113), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 54/104 (51%)

Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
           ++ + ++E+M    + MN  + T++ +  +  G+  +A  ++ +M  LG++P    Y   
Sbjct: 342 RKAYRLFEEMRQKGMVMNVVTYTSLIKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTI 401

Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472
           L   C +G+VDKA  V   M+EH + P+     +L+     +G+
Sbjct: 402 LDHLCKSGNVDKAYGVFNDMIEHEITPDAISYNSLISGLCRSGR 445

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUA2|PP141_ARATH Pentatricopeptide repeat-containing protein At2g01740 OS=Arabidopsis thaliana GN=At2g01740 PE=3 SV=1

 Score = 47.8 bits (112), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 53/121 (43%)

Query: 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422
            KK   QR  E+Y +M  D V  N    T +       GD D A   + +M + G+   +
Sbjct: 244 CKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDI 303

Query: 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482
            +YG  +S  C NG + +A  + E M +  + P+      ++    ++G+      + HK
Sbjct: 304 TAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHK 363

Query: 483 L 483
           L
Sbjct: 364 L 364

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	874
359484351	816	PREDICTED: pentatricopeptide repeat-cont	0.891	0.954	0.609	0.0
297738805	751	unnamed protein product [Vitis vinifera]	0.845	0.984	0.618	0.0
255546443	745	multidrug resistance pump, putative [Ric	0.823	0.966	0.612	0.0
356527775	724	PREDICTED: pentatricopeptide repeat-cont	0.704	0.850	0.595	0.0
449465334	633	PREDICTED: proteinaceous RNase P 1, chlo	0.711	0.982	0.611	0.0
357520987	668	Pentatricopeptide repeat-containing prot	0.647	0.847	0.598	0.0
357520951	702	Pentatricopeptide repeat-containing prot	0.647	0.806	0.597	0.0
224119796	461	predicted protein [Populus trichocarpa]	0.457	0.867	0.779	0.0
413936385	684	hypothetical protein ZEAMMB73_755879 [Ze	0.647	0.827	0.517	0.0
218190470	719	hypothetical protein OsI_06719 [Oryza sa	0.618	0.752	0.558	0.0

>gi|359484351|ref|XP_002280803.2| PREDICTED: pentatricopeptide repeat-containing protein At2g32230, mitochondrial-like [Vitis vinifera]

 Score =  945 bits (2443), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/829 (60%), Positives = 607/829 (73%), Gaps = 50/829 (6%)

Query: 80  RTRKGTASGASSLGTRDKRVDS---------AGEEKDGKRLTKDNNSRKNFAFLKSREMS 130
           RT K T SG SS G++ +RV           A EEK+ KR T++  S+K     ++   S
Sbjct: 4   RTGKETGSGFSSYGSKGERVGRKSVKTHVGWAVEEKNEKRFTRERYSKKRLDSRRNGGTS 63

Query: 131 SGNSSLRSKDKKIGIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSE 190
           S   SL+S+ K +  KS K       N+K E+++      KVR    EKGSKK+K D  E
Sbjct: 64  SKFPSLKSESKNLVNKSLKA------NEKEEEKSKKGDADKVREEM-EKGSKKNKVDSQE 116

Query: 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSG 250
              LRV L+MCSK GDVMGA+ LYD A REGI+LGQYHY VLLYLCSSAA+GV++PAKSG
Sbjct: 117 GL-LRVGLEMCSKNGDVMGALELYDSALREGIELGQYHYTVLLYLCSSAALGVIRPAKSG 175

Query: 251 SGMRTLDTFEVSTM-------NSTELGDSRD-----------MDNNGQLDYGS-----SP 287
           +G R+LD    S+        +  E GD+             + NN    Y +     SP
Sbjct: 176 TGSRSLDMLSPSSEVRGGVSEDLAEFGDTSKKNFGGPESKIPVSNNAMSVYSTKIHQNSP 235

Query: 288 --MIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKK 345
             +++   S      DDLD +  E + L Q SN   + NSQLL+G+ +L +G DD + KK
Sbjct: 236 KKVLNSNRSAFEVAKDDLDGSITEMDKLSQVSNCFNQSNSQLLEGQMHLRKGVDDSTNKK 295

Query: 346 DWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDM 405
           +   DN    EIR+SED KKYA +RGFEIYEKMCL++VPMNEA+LT+V RMAMSMG+GDM
Sbjct: 296 E---DN----EIRVSEDFKKYALRRGFEIYEKMCLEKVPMNEATLTSVARMAMSMGNGDM 348

Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
           AFDMVK+MK LGINPRLRSYGPALS FCNNGD++KA  VEEHMLEHGVYPEEPELEALLR
Sbjct: 349 AFDMVKQMKPLGINPRLRSYGPALSAFCNNGDIEKAFGVEEHMLEHGVYPEEPELEALLR 408

Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTME 525
           V +EAGK D+VYY+LHKLRTSVR+VS STA++I KWF S  AA  GK  W++ LI + + 
Sbjct: 409 VGIEAGKSDKVYYVLHKLRTSVRQVSHSTANLIEKWFKSNAAAAAGKGNWDQRLISEAIV 468

Query: 526 NKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIK 585
           N GGGWHG GWLGKGKW VSHT VG D LC CCGEKLA IDLDP ETEKFAESVASIAIK
Sbjct: 469 NGGGGWHGQGWLGKGKWNVSHTNVGADGLCLCCGEKLATIDLDPTETEKFAESVASIAIK 528

Query: 586 RERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPL 645
           RE+NSSFQKFQKWLDYYGP+EAVVDAANVGL+SQR F P++VNA+VNGIRQ  PSKKWPL
Sbjct: 529 REKNSSFQKFQKWLDYYGPYEAVVDAANVGLFSQRRFIPSKVNAIVNGIRQMLPSKKWPL 588

Query: 646 IVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDE 705
           I+LHN+RITG KMD+P NRALIEKWKNADALY TPTGSNDDWYWLYAAIKFKCL+VTNDE
Sbjct: 589 IILHNKRITGKKMDEPANRALIEKWKNADALYTTPTGSNDDWYWLYAAIKFKCLIVTNDE 648

Query: 706 MRDHTFQLLGNDFFPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQ 765
           MRDH FQLLGNDFFP+WKERHQV FSFSD+GP F+MPPPCSV+IQESE G+WHIP+AS+ 
Sbjct: 649 MRDHIFQLLGNDFFPKWKERHQVHFSFSDSGPVFHMPPPCSVIIQESENGHWHIPVASEH 708

Query: 766 DYDDEERRWLCVTRANSHMNRQNSYSSPKDLQPLDHNKGQASSSTRADAKTKSHSSNDSP 825
           D  + ER WLCVTRANS M +Q+     K+ Q   ++K +  S T+ +   +  SSN   
Sbjct: 709 D-SEGERTWLCVTRANSQMAKQSPSPRNKESQYPCYDKRRVRSDTQTEIHKELSSSNHRN 767

Query: 826 SVNTKRPARKMYKNLKNILSASVLSNHQSVLSKIEAAEELGDCVIDFEI 874
              +K P +++Y+NL+NILSAS+   H +VLS+IEAAE+LG+C+IDF+I
Sbjct: 768 QEKSKAPPQEIYRNLRNILSASIFPTHSTVLSEIEAAEKLGNCIIDFQI 816

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738805|emb|CBI28050.3| unnamed protein product [Vitis vinifera]

 Score =  938 bits (2424), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/804 (61%), Positives = 591/804 (73%), Gaps = 65/804 (8%)

Query: 80  RTRKGTASGASSLGTRDKRVDS---------AGEEKDGKRLTKDNNSRKNFAFLKSREMS 130
           RT K T SG SS G++ +RV           A EEK+ KR T++  S+K     ++   S
Sbjct: 4   RTGKETGSGFSSYGSKGERVGRKSVKTHVGWAVEEKNEKRFTRERYSKKRLDSRRNGGTS 63

Query: 131 SGNSSLRSKDKKIGIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSE 190
           S   SL+S+ K +  KS K       N+K E+++      KVR    EKGSKK+K D  E
Sbjct: 64  SKFPSLKSESKNLVNKSLKA------NEKEEEKSKKGDADKVREEM-EKGSKKNKVDSQE 116

Query: 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSG 250
              LRV L+MCSK GDVMGA+ LYD A REGI+LGQYHY VLLYLCSSAA+GV++PAKSG
Sbjct: 117 GL-LRVGLEMCSKNGDVMGALELYDSALREGIELGQYHYTVLLYLCSSAALGVIRPAKSG 175

Query: 251 SGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310
           +G RT   FEV+                                      DDLD +  E 
Sbjct: 176 TGSRT---FEVAK-------------------------------------DDLDGSITEM 195

Query: 311 ENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQR 370
           + L Q SN   + NSQLL+G+ +L +G DD + KK+   DN    EIR+SED KKYA +R
Sbjct: 196 DKLSQVSNCFNQSNSQLLEGQMHLRKGVDDSTNKKE---DN----EIRVSEDFKKYALRR 248

Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
           GFEIYEKMCL++VPMNEA+LT+V RMAMSMG+GDMAFDMVK+MK LGINPRLRSYGPALS
Sbjct: 249 GFEIYEKMCLEKVPMNEATLTSVARMAMSMGNGDMAFDMVKQMKPLGINPRLRSYGPALS 308

Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKV 490
            FCNNGD++KA  VEEHMLEHGVYPEEPELEALLRV +EAGK D+VYY+LHKLRTSVR+V
Sbjct: 309 AFCNNGDIEKAFGVEEHMLEHGVYPEEPELEALLRVGIEAGKSDKVYYVLHKLRTSVRQV 368

Query: 491 SPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVG 550
           S STA++I KWF S  AA  GK  W++ LI + + N GGGWHG GWLGKGKW VSHT VG
Sbjct: 369 SHSTANLIEKWFKSNAAAAAGKGNWDQRLISEAIVNGGGGWHGQGWLGKGKWNVSHTNVG 428

Query: 551 GDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAVVD 610
            D LC CCGEKLA IDLDP ETEKFAESVASIAIKRE+NSSFQKFQKWLDYYGP+EAVVD
Sbjct: 429 ADGLCLCCGEKLATIDLDPTETEKFAESVASIAIKREKNSSFQKFQKWLDYYGPYEAVVD 488

Query: 611 AANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKW 670
           AANVGL+SQR F P++VNA+VNGIRQ  PSKKWPLI+LHN+RITG KMD+P NRALIEKW
Sbjct: 489 AANVGLFSQRRFIPSKVNAIVNGIRQMLPSKKWPLIILHNKRITGKKMDEPANRALIEKW 548

Query: 671 KNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRF 730
           KNADALY TPTGSNDDWYWLYAAIKFKCL+VTNDEMRDH FQLLGNDFFP+WKERHQV F
Sbjct: 549 KNADALYTTPTGSNDDWYWLYAAIKFKCLIVTNDEMRDHIFQLLGNDFFPKWKERHQVHF 608

Query: 731 SFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTRANSHMNRQNSY 790
           SFSD+GP F+MPPPCSV+IQESE G+WHIP+AS+ D  + ER WLCVTRANS M +Q+  
Sbjct: 609 SFSDSGPVFHMPPPCSVIIQESENGHWHIPVASEHD-SEGERTWLCVTRANSQMAKQSPS 667

Query: 791 SSPKDLQPLDHNKGQASSSTRADAKTKSHSSNDSPSVNTKRPARKMYKNLKNILSASVLS 850
              K+ Q   ++K +  S T+ +   +  SSN      +K P +++Y+NL+NILSAS+  
Sbjct: 668 PRNKESQYPCYDKRRVRSDTQTEIHKELSSSNHRNQEKSKAPPQEIYRNLRNILSASIFP 727

Query: 851 NHQSVLSKIEAAEELGDCVIDFEI 874
            H +VLS+IEAAE+LG+C+IDF+I
Sbjct: 728 THSTVLSEIEAAEKLGNCIIDFQI 751

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546443|ref|XP_002514281.1| multidrug resistance pump, putative [Ricinus communis] gi|223546737|gb|EEF48235.1| multidrug resistance pump, putative [Ricinus communis]

 Score =  895 bits (2312), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/753 (61%), Positives = 565/753 (75%), Gaps = 33/753 (4%)

Query: 142 KIGIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMC 201
           K   K  K ++ ++ + +ME++       KV+     K SK++K D  ++ + R+ELD C
Sbjct: 6   KGATKERKYMDNQLISGRMEKKPRKGSDNKVKEEKSGKWSKRNKGD-PQEVKFRLELDKC 64

Query: 202 SKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEV 261
            KRGDVM AI+LYD AQREGIK+GQYHY VLLYLCSSAA GVV+P KSG G R  ++  V
Sbjct: 65  CKRGDVMAAIQLYDLAQREGIKMGQYHYTVLLYLCSSAAAGVVQPGKSGRGGRASNSLAV 124

Query: 262 STMNST-------ELGDSRDMDN-----------NGQLDYGSSP-MIDKLESNSSYRFDD 302
           S   S+       EL D  D+D            N  +D G +P   DK+E  SS RF+D
Sbjct: 125 SDEVSSASVVEFRELRDKNDVDATESDTKILNNVNKVIDSGRNPGSKDKMELKSSNRFND 184

Query: 303 LDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSED 362
            DST NE++NL Q        N Q L+  S   +  D +           D + I +SED
Sbjct: 185 SDSTSNERKNLSQIPIVVSDSNYQQLECLSFPAKNNDGKY---------HDGNGILVSED 235

Query: 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422
            KKYA +RGFEIYEKMC+D++PMNEA+LTAV R+AMSMG+GDMAFDMVK+MK LG+NPRL
Sbjct: 236 IKKYALERGFEIYEKMCMDKIPMNEATLTAVARIAMSMGNGDMAFDMVKQMKLLGLNPRL 295

Query: 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482
           RSYGPAL+ FC++GD DKA +VE+HML+HGV+PEEPELEALLRVSVEAGKGD+VYYLLHK
Sbjct: 296 RSYGPALAAFCSSGDADKAFTVEKHMLDHGVHPEEPELEALLRVSVEAGKGDKVYYLLHK 355

Query: 483 LRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKW 542
           LRTSVRKVSPSTA++I +WF SK A+R+GK KW++ ++K+ + N GGGWHG GWLGKGKW
Sbjct: 356 LRTSVRKVSPSTANIIIEWFKSKAASRVGKTKWDKRVVKEAIANGGGGWHGQGWLGKGKW 415

Query: 543 IVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYY 602
            VS ++VG DA CK CG+KLA IDLDP ETE FAESVASIAIKRE++SSFQKFQKWLDYY
Sbjct: 416 TVSCSSVGVDAFCKSCGKKLATIDLDPTETESFAESVASIAIKREKDSSFQKFQKWLDYY 475

Query: 603 GPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPV 662
           GPFEAVVD ANVGL  Q+ F P+++NA+ NGIRQK PSKKWPLIVLHNRR+TGHKMD+PV
Sbjct: 476 GPFEAVVDGANVGLLGQKRFIPSKINAIANGIRQKLPSKKWPLIVLHNRRVTGHKMDEPV 535

Query: 663 NRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRW 722
           N++L+EKWK+ADALYATPTGSNDDWYWLYAAIKFKCL+VTNDEMRDHTFQLLGNDFFP+W
Sbjct: 536 NKSLVEKWKHADALYATPTGSNDDWYWLYAAIKFKCLIVTNDEMRDHTFQLLGNDFFPKW 595

Query: 723 KERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTRANS 782
           KERHQV F FSDAGP F+MPP  SVVIQESE G+WHIPIAS  DY + ER WLC+TRA  
Sbjct: 596 KERHQVHFGFSDAGPVFHMPPSFSVVIQESENGHWHIPIASDTDY-EPERAWLCITRAKL 654

Query: 783 HMNRQNSYS-SPKDLQPLDHNKGQASSSTRADAKTKSHSSNDSPSVNTKRPARKMYKNLK 841
            + R++S +  P++ Q +  + GQA   T+   K K  + N     +      ++YKNL+
Sbjct: 655 PLPRKDSITIKPEESQFVKRSSGQAKLPTKTRVKAKQGTLNHGS--DEDNSPEQVYKNLR 712

Query: 842 NILSASVLSNHQSVLSKIEAAEELGDCVIDFEI 874
           NILSAS  ++H++VLS+IEAAE+LGD VIDF+I
Sbjct: 713 NILSASGFTDHRTVLSEIEAAEKLGDSVIDFQI 745

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527775|ref|XP_003532483.1| PREDICTED: pentatricopeptide repeat-containing protein At2g32230, mitochondrial-like [Glycine max]

 Score =  819 bits (2115), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/687 (59%), Positives = 501/687 (72%), Gaps = 71/687 (10%)

Query: 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSG 250
           + +L+  LDMCSKRGDVMGA+ LYD A  EG+KLGQ+HY VLLYLCSSAAVGVV+PAKSG
Sbjct: 106 EVKLKNALDMCSKRGDVMGALSLYDSAISEGVKLGQHHYTVLLYLCSSAAVGVVRPAKSG 165

Query: 251 SGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310
           SG RTL+    S + S E+                         N    FD         
Sbjct: 166 SGARTLN----SHVYSNEV------------------------PNEGTHFD--------- 188

Query: 311 ENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRL-SEDAKKYAFQ 369
                            LDG++ L              +++ + DEI L SED K+YA Q
Sbjct: 189 -----------------LDGKAELNS-----------DLNSTEKDEILLVSEDVKRYALQ 220

Query: 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429
           RGFE+Y+ MCLD+V MNEA+LTAV RMAMSMGDGD AF+MV++MK LGI+PRLRSYGPAL
Sbjct: 221 RGFEVYQNMCLDKVQMNEAALTAVARMAMSMGDGDRAFEMVRQMKDLGISPRLRSYGPAL 280

Query: 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRK 489
             FCNNG++DKA +VE+HML+HGVYPEEPELEALLRVSV AG  D+VYY+LHKLR+ VRK
Sbjct: 281 FTFCNNGEIDKAFAVEKHMLQHGVYPEEPELEALLRVSVGAGNSDKVYYVLHKLRSIVRK 340

Query: 490 VSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTV 549
           VSP+T+ +I  WF SK+A+R+GK+KW+E LI++ +EN GGGWHG GWLGKGKW   HTT+
Sbjct: 341 VSPTTSSLIVDWFKSKQASRVGKRKWDERLIREAIENNGGGWHGQGWLGKGKWEAVHTTI 400

Query: 550 GGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAVV 609
           G D +CKCC  +L  IDLDP+ETE FA+SVAS+A+ RE+ S+FQKFQKWLDY GPFEAVV
Sbjct: 401 GKDGMCKCCQVQLTTIDLDPVETENFAKSVASLAVMREKGSNFQKFQKWLDYSGPFEAVV 460

Query: 610 DAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEK 669
           DAANVGL+ Q  F P ++NAV N IRQ+ PSKK+PLI+LHN+RI G KMD+P+NRALI+K
Sbjct: 461 DAANVGLFGQGRFMPHKINAVANEIRQRLPSKKFPLIILHNKRIKGDKMDEPINRALIDK 520

Query: 670 WKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVR 729
           W NADALYATPTGSNDDWYWLYAAIKF+CLLVTNDEMRDH FQLLGNDFFP+WKERHQVR
Sbjct: 521 WNNADALYATPTGSNDDWYWLYAAIKFRCLLVTNDEMRDHLFQLLGNDFFPKWKERHQVR 580

Query: 730 FSFSDAG-PEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTRANSHMNRQN 788
           FSFSD G P F+MPPPCSVVIQESE+G+WHIPI ++ + D+ ERRWLC+TRA   +  ++
Sbjct: 581 FSFSDTGSPVFHMPPPCSVVIQESEEGHWHIPIDAELN-DESERRWLCITRAKLDVVSKD 639

Query: 789 SYSSPKDLQPLDHNKGQASSSTRADAKTKSHSSNDSPSVNTKRPARKMYKNLKNILSASV 848
           S +S KD +PL   +   S++  A AK   H  N       K   +++YKN+++I   SV
Sbjct: 640 SSTS-KDSKPLQKGECARSATRNASAKESQH-QNLVNHKEKKETPQELYKNVRDIFLESV 697

Query: 849 LSN-HQSVLSKIEAAEELGDCVIDFEI 874
            S+ + S+LS IEAAE +G C IDF+I
Sbjct: 698 SSDKNNSILSDIEAAELIGGCTIDFQI 724

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465334|ref|XP_004150383.1| PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Cucumis sativus] gi|449506617|ref|XP_004162799.1| PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Cucumis sativus]

 Score =  777 bits (2007), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/661 (61%), Positives = 485/661 (73%), Gaps = 39/661 (5%)

Query: 129 MSSGNSSLRSKDKKIGIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDR 188
           M  G S L++      +K S+      D  K++++       K   + +EKG K  K + 
Sbjct: 1   MGDGISFLKTSTDSASLKVSR------DGGKIKEKR------KGNQVVEEKG-KLLKGNN 47

Query: 189 SEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAK 248
              F  R  LDMCSK GD +GAI+LY+ AQ+EGI L QYHY V+LYLCSSAA+GV++PAK
Sbjct: 48  ETPF--RANLDMCSKTGDFIGAIKLYEWAQKEGINLEQYHYAVILYLCSSAALGVIQPAK 105

Query: 249 SGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFN 308
           SG G +T  +  +S + S E        N   LD   S     +    +Y   +L ST N
Sbjct: 106 SGYGNQTSISLTLSKVGSYE--------NPIILDEQHSTKTSYVSKGGNYGRTEL-STEN 156

Query: 309 EKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAF 368
           ++ N    S+G       ++D + N+    +     K W +D +    I + ED KKYA 
Sbjct: 157 DRSN----SDG-------MMDNKENIFH-TNGSMVPKAWILDEKSHSNILVDEDFKKYAL 204

Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
           + GFEIYEKMC + +PMNEA+LT+V RMAMSMGDGD AFDMVK+MK LG+NPRLRSYGPA
Sbjct: 205 ETGFEIYEKMCAENIPMNEATLTSVARMAMSMGDGDKAFDMVKQMKPLGLNPRLRSYGPA 264

Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVR 488
           LS FC NG ++KA SVE+HMLEHGVYPEEPEL ALLRVS+ A   ++VYYLLHKLRTSVR
Sbjct: 265 LSTFCKNGKLEKAFSVEKHMLEHGVYPEEPELAALLRVSINASNAEKVYYLLHKLRTSVR 324

Query: 489 KVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTT 548
           +V PSTAD+I  WF SK+AAR+GK K +  +IK  + N GGGWHGLGWLG+GKW VS T 
Sbjct: 325 QVLPSTADLIITWFKSKDAARVGKVKLDRKIIKKAIGNGGGGWHGLGWLGRGKWSVSSTN 384

Query: 549 VGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAV 608
           VG D LCK CGEKLA IDLDPIETE FAESVA+I  +RE+NSSFQKFQKWL+YYGPFEAV
Sbjct: 385 VGKDGLCKSCGEKLATIDLDPIETENFAESVAAIVTQREKNSSFQKFQKWLEYYGPFEAV 444

Query: 609 VDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIE 668
           +DAANVGL+SQR F P++VN + NGIRQK PSKKWPLI+LHNRRITG KM++PVN+ LIE
Sbjct: 445 IDAANVGLFSQRKFAPSKVNLIANGIRQKLPSKKWPLIILHNRRITGRKMEEPVNKTLIE 504

Query: 669 KWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQV 728
           KWKNADALYATPTGSNDDWYWLYAAIKFKCL+VTNDEMRDHTFQLLGNDFFPRWKERHQV
Sbjct: 505 KWKNADALYATPTGSNDDWYWLYAAIKFKCLIVTNDEMRDHTFQLLGNDFFPRWKERHQV 564

Query: 729 RFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTRAN--SHMNR 786
            FSFS  GP F+MPPPCSVVIQESE G+WH+P+AS+  Y +E+R+WLC+TR N  S M R
Sbjct: 565 HFSFSATGPVFHMPPPCSVVIQESENGHWHVPLASEHSY-EEDRKWLCITRGNLQSQMAR 623

Query: 787 Q 787
           Q
Sbjct: 624 Q 624

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520987|ref|XP_003630782.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355524804|gb|AET05258.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]

 Score =  754 bits (1948), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/628 (59%), Positives = 452/628 (71%), Gaps = 62/628 (9%)

Query: 187 DRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKP 246
           D   Q +LRV LD CSKRGD+ G                 +HY VLLYLCSSAA+G ++P
Sbjct: 75  DTPPQAKLRVSLDQCSKRGDLKG-----------------HHYTVLLYLCSSAAIGGLRP 117

Query: 247 AKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDST 306
           AKSGSG RTL+  +VS+ N            NG +D                R DD D  
Sbjct: 118 AKSGSGTRTLNA-QVSSNNL-----------NGSVD----------------RNDDDDER 149

Query: 307 FNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKY 366
           F    +           +++LLD   ++    D     KD    N     I +SE  K+Y
Sbjct: 150 FCSDSD-----------DNKLLDNSVSVSHSDDSDMNDKDRDKRNG----IMVSEVVKEY 194

Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426
           A QRGFE+YE M + +V MNEA+LT+V RMAM++ DGD AF+MVK+MK LGINPRLRSYG
Sbjct: 195 ALQRGFEVYENMRMSKVEMNEAALTSVARMAMALSDGDKAFEMVKQMKILGINPRLRSYG 254

Query: 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486
           PALS +CNNG++DKA  VE+HMLEHGVYPEEPELEALLRVS+  GK DRVYY+LHKLR+S
Sbjct: 255 PALSTYCNNGEIDKAFDVEKHMLEHGVYPEEPELEALLRVSIRGGKSDRVYYVLHKLRSS 314

Query: 487 VRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSH 546
           VRKVS +TAD+I  WF SK A ++GK+KW+  LI   M+N GGGWHG GWLGKGKW V  
Sbjct: 315 VRKVSTTTADLIVDWFKSKIALKVGKRKWDNGLIMKAMQNNGGGWHGTGWLGKGKWQVLQ 374

Query: 547 TTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFE 606
           T+V  D +CKCCG +LA IDLDP+ETE FA+SVASIAI  E+NS+FQ FQKWLDYYGPFE
Sbjct: 375 TSVRKDGMCKCCGVQLATIDLDPVETENFAKSVASIAISNEKNSNFQTFQKWLDYYGPFE 434

Query: 607 AVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRAL 666
           AV+DAANVGLYSQ  F P+++NAVVN +RQK PSKK+PLIVLH+RRI G K D P+N+AL
Sbjct: 435 AVIDAANVGLYSQGKFMPSKINAVVNELRQKLPSKKFPLIVLHHRRIKGDKRDVPINKAL 494

Query: 667 IEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERH 726
           +++W NA+ LYATPTGSNDDWYWLYAAIKFKCLLV+NDEMRDH FQLLGNDFFP+WKERH
Sbjct: 495 VDRWNNANVLYATPTGSNDDWYWLYAAIKFKCLLVSNDEMRDHLFQLLGNDFFPKWKERH 554

Query: 727 QVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTRANSHMNR 786
           QVRF FSDAG EFYMPPPCSVVIQESE+G+WHIPI ++ + D+ ERRWLC+TRA   M  
Sbjct: 555 QVRFGFSDAGLEFYMPPPCSVVIQESEEGHWHIPIEAELN-DEAERRWLCITRAKLDMVS 613

Query: 787 QNSYSSPKDLQPLDHNKGQASSSTRADA 814
            +S ++ KD +PL  N  QA S TR ++
Sbjct: 614 GDSSTTSKDEKPL-QNGEQAKSVTRKES 640

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520951|ref|XP_003630764.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355524786|gb|AET05240.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]

 Score =  753 bits (1943), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/628 (59%), Positives = 452/628 (71%), Gaps = 62/628 (9%)

Query: 187 DRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKP 246
           D   Q +LRV LD CSKRGD+ G                 +HY VLLYLCSSAA+G ++P
Sbjct: 109 DTPPQAKLRVSLDQCSKRGDLKG-----------------HHYTVLLYLCSSAAIGGLRP 151

Query: 247 AKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDST 306
           AKSGSG RTL+  +VS+ N            NG +D                R DD D  
Sbjct: 152 AKSGSGTRTLNA-QVSSNNL-----------NGSVD----------------RNDDDDER 183

Query: 307 FNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKY 366
           F    +           +++LLD   ++    D     KD        + I +SE  K+Y
Sbjct: 184 FCSDSD-----------DNKLLDNSVSVSHSDDSDMNDKD----RDKRNGIMVSEVVKEY 228

Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426
           A QRGFE+YE M + +V MNEA+LT+V RMAM++ DGD AF+MVK+MK LGINPRLRSYG
Sbjct: 229 ALQRGFEVYENMRMSKVEMNEAALTSVARMAMALSDGDKAFEMVKQMKILGINPRLRSYG 288

Query: 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486
           PALS +CNNG++DKA  VE+HMLEHGVYPEEPELEALLRVS+  GK DRVYY+LHKLR+S
Sbjct: 289 PALSTYCNNGEIDKAFDVEKHMLEHGVYPEEPELEALLRVSIRGGKSDRVYYVLHKLRSS 348

Query: 487 VRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSH 546
           VRKVS +TAD+I  WF SK A ++GK+KW+  LI   M+N GGGWHG GWLGKGKW V  
Sbjct: 349 VRKVSTTTADLIVDWFKSKIALKVGKRKWDNGLIMKAMQNNGGGWHGTGWLGKGKWQVLQ 408

Query: 547 TTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFE 606
           T+V  D +CKCCG +LA IDLDP+ETE FA+SVASIAI  E+NS+FQ FQKWLDYYGPFE
Sbjct: 409 TSVRKDGMCKCCGVQLATIDLDPVETENFAKSVASIAISNEKNSNFQTFQKWLDYYGPFE 468

Query: 607 AVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRAL 666
           AV+DAANVGLYSQ  F P+++NAVVN +RQK PSKK+PLIVLH+RRI G K D P+N+AL
Sbjct: 469 AVIDAANVGLYSQGKFMPSKINAVVNELRQKLPSKKFPLIVLHHRRIKGDKRDVPINKAL 528

Query: 667 IEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERH 726
           +++W NA+ LYATPTGSNDDWYWLYAAIKFKCLLV+NDEMRDH FQLLGNDFFP+WKERH
Sbjct: 529 VDRWNNANVLYATPTGSNDDWYWLYAAIKFKCLLVSNDEMRDHLFQLLGNDFFPKWKERH 588

Query: 727 QVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTRANSHMNR 786
           QVRF FSDAG EFYMPPPCSVVIQESE+G+WHIPI ++ + D+ ERRWLC+TRA   M  
Sbjct: 589 QVRFGFSDAGLEFYMPPPCSVVIQESEEGHWHIPIEAELN-DEAERRWLCITRAKLDMVS 647

Query: 787 QNSYSSPKDLQPLDHNKGQASSSTRADA 814
            +S ++ KD +PL  N  QA S TR ++
Sbjct: 648 GDSSTTSKDEKPL-QNGEQAKSVTRKES 674

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119796|ref|XP_002331163.1| predicted protein [Populus trichocarpa] gi|222873246|gb|EEF10377.1| predicted protein [Populus trichocarpa]

 Score =  665 bits (1716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/403 (77%), Positives = 360/403 (89%), Gaps = 3/403 (0%)

Query: 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418
            SED KKYA QRG EI+EKMC ++VP+NEA+LTAV RMAMS+G+GD+AF+MVK+M +LGI
Sbjct: 62  FSEDVKKYALQRGCEIFEKMCKEKVPINEATLTAVARMAMSIGNGDLAFEMVKQMDALGI 121

Query: 419 NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYY 478
           NP+LRSYGPALSVFC++GD+DKA  VE+HMLEHGVYPEEPEL+ALLRVSVE GKGD+VYY
Sbjct: 122 NPKLRSYGPALSVFCSSGDIDKAFYVEKHMLEHGVYPEEPELKALLRVSVEGGKGDKVYY 181

Query: 479 LLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLG 538
           LLHKLR  VR+VSPSTA +I +WFNSK A+R+GK KW+   +K+ +EN GGGWHG GWLG
Sbjct: 182 LLHKLRRIVRRVSPSTAGIIVRWFNSKAASRVGKTKWD---VKEAIENGGGGWHGQGWLG 238

Query: 539 KGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKW 598
           KGKW VS T+VG D +CK CG+KL  IDLD +ETEKFAESVASIAIKR+R+SSFQ+FQKW
Sbjct: 239 KGKWTVSCTSVGLDGICKYCGQKLTTIDLDAVETEKFAESVASIAIKRDRDSSFQRFQKW 298

Query: 599 LDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKM 658
           LDYYGPFEAV+D AN G+Y+Q  F P+++NAVVNGIRQK PSKKWPLIVLHN+RITG KM
Sbjct: 299 LDYYGPFEAVIDGANAGIYNQGRFMPSKINAVVNGIRQKLPSKKWPLIVLHNKRITGRKM 358

Query: 659 DQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDF 718
           D PVN+A IEKWKNADALYATPTGSNDDWYWLYAAIKFKCL+VTNDEMRDHTF LLGNDF
Sbjct: 359 DGPVNKAFIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLIVTNDEMRDHTFHLLGNDF 418

Query: 719 FPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPI 761
           FPRWKERHQV F F+DAGP+F MPPPCSVVIQESEKG+WHIPI
Sbjct: 419 FPRWKERHQVHFRFTDAGPDFDMPPPCSVVIQESEKGHWHIPI 461

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413936385|gb|AFW70936.1| hypothetical protein ZEAMMB73_755879 [Zea mays]

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/622 (51%), Positives = 419/622 (67%), Gaps = 56/622 (9%)

Query: 168 GQYKVRGITDEKGSKKSKKDRSEQF--QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG 225
           G  +  G       KK KK    ++  +LRVELDMCSKRGDVMGAI LYD A  EGIKLG
Sbjct: 111 GNSRDEGTGRRNACKKMKKPPDGEYAGKLRVELDMCSKRGDVMGAITLYDSAVEEGIKLG 170

Query: 226 QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNS--TELGDSRDMDNNGQLDY 283
           Q+HYNVLLYLCSSA++G V+PAKSG+            M S    +G ++ +D +     
Sbjct: 171 QHHYNVLLYLCSSASLGFVQPAKSGN------------MGSGIASIGPAQKLDPSPSRSL 218

Query: 284 GSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSR 343
           G S   +   S S  +        ++ +N      G +K  +                  
Sbjct: 219 GGSEGDNAYASESHVQ--------DQGKNKADLIPGGLKAQTV----------------- 253

Query: 344 KKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDE--VPMNEASLTAVGRMAMSMG 401
                        I + ++   YA  RGFEI++KMC ++  V M+EA+LTA  RMA+SMG
Sbjct: 254 ------------SIPVEDELGDYARARGFEIFDKMCSEKERVQMSEAALTAKARMALSMG 301

Query: 402 DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELE 461
           D DMAF++VK+MK LG+ P+LRSYGPAL+ FCN+G+V+KA  VE HMLE G+ PEE ELE
Sbjct: 302 DSDMAFEIVKQMKGLGLKPKLRSYGPALTAFCNSGNVEKAFEVEAHMLESGITPEEAELE 361

Query: 462 ALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIK 521
            LLR SV   +GD+VYYLLHK RT+VR+VS STA++   WF S  A+++GK+KW+   I 
Sbjct: 362 TLLRASVVGRRGDKVYYLLHKFRTAVRQVSHSTAELFEAWFRSPTASKVGKRKWDAGAIA 421

Query: 522 DTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVAS 581
             +EN GGGWHG GWLG+GKW V+H+ +  + +C  CGEKLAIIDLDP ETE FA  VA 
Sbjct: 422 KAIENNGGGWHGFGWLGRGKWTVAHSNINENGVCLACGEKLAIIDLDPKETEDFATFVAK 481

Query: 582 IAIKRERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSK 641
           +AIKRER S+F+ FQKWL+ +GPFEAVVDAANVGL+S ++   ++VN+V + IR +F SK
Sbjct: 482 LAIKRERKSNFENFQKWLEKHGPFEAVVDAANVGLFSHKHLSLSKVNSVADAIRLRFTSK 541

Query: 642 KWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLV 701
           KWPLIVLHN+ + G +M +  +  L++KWK  +++YATPTGSNDDWYWLYAAI+ KCL++
Sbjct: 542 KWPLIVLHNKHLIGERMKKLNDHKLVQKWKQENSIYATPTGSNDDWYWLYAAIRCKCLII 601

Query: 702 TNDEMRDHTFQLLGNDFFPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPI 761
           TNDEMRDHTFQ+L  +FFP+WKERHQV F+  D    F MPPP SVVIQES+KG+WHIP+
Sbjct: 602 TNDEMRDHTFQILERNFFPKWKERHQVHFTLEDRCVTFQMPPPYSVVIQESDKGHWHIPV 661

Query: 762 ASKQDYDDEERRWLCVTRANSH 783
            S++   +++R WLCVTR NS 
Sbjct: 662 -SEEGLLEKDRTWLCVTRQNSQ 682

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218190470|gb|EEC72897.1| hypothetical protein OsI_06719 [Oryza sativa Indica Group]

 Score =  647 bits (1670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/593 (55%), Positives = 418/593 (70%), Gaps = 52/593 (8%)

Query: 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSG 250
           + +LRVELDMCSKRGDV+GAI LYD A +EGIK+GQ+HY+VLLYLCSSAA+G V+PAKSG
Sbjct: 177 EVKLRVELDMCSKRGDVIGAINLYDSAVKEGIKMGQHHYSVLLYLCSSAALGFVQPAKSG 236

Query: 251 SGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310
           +    + +                    GQL   S+  +  LE       DD+       
Sbjct: 237 NAGSGIASI-------------------GQLHSSSTQSVGNLEG------DDVQ------ 265

Query: 311 ENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQR 370
                 S GH    S+  +G        DD + K            I +S++ ++YA  R
Sbjct: 266 ------SEGH----SEDQEGNKTDLFASDDGTEK---------PSRIPVSDELREYARTR 306

Query: 371 GFEIYEKMCLDE--VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
           GFEI+EKM  +E  VPMNE++LTAV RMAMSMG+GDMAFD+VK+MK  GI P+LRSYGPA
Sbjct: 307 GFEIFEKMRSEEEKVPMNESALTAVARMAMSMGNGDMAFDVVKQMKDQGIAPKLRSYGPA 366

Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVR 488
           L+ FCN+G+V+KA  VE HMLE GV PEEPELE LL+ SV A +GD+VYYLLHK RT+VR
Sbjct: 367 LTAFCNSGNVEKAFEVEAHMLESGVRPEEPELETLLKASVAAQQGDKVYYLLHKFRTTVR 426

Query: 489 KVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTT 548
           + S +TA ++  WF S  A+++GK+KW+   I   +EN GGGWHGLGWLG+GKW +SH+ 
Sbjct: 427 QASSTTAKLLEDWFQSPTASKVGKRKWDAGAITKAIENNGGGWHGLGWLGRGKWTISHSH 486

Query: 549 VGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAV 608
           +  +  C  CGEKL IIDLDP ETE FA  VA +AIKRER S+F  FQKWL+ +GPF+AV
Sbjct: 487 IDRNGACLACGEKLTIIDLDPKETEDFATLVAKLAIKRERRSNFDNFQKWLEKHGPFDAV 546

Query: 609 VDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIE 668
           VD ANVGL+S ++   +++N V + IRQ+F S+K PLIV+HNR +TG +M +P NR L+E
Sbjct: 547 VDGANVGLFSHKHISLSKINIVADVIRQRFQSRKLPLIVVHNRHLTGERMQKPSNRKLVE 606

Query: 669 KWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQV 728
           KWK ++A+YATPTGSNDDWYWLYAAI+ KCL+VTNDEMRDHTFQLL  DFFP+WKERHQV
Sbjct: 607 KWKLSNAIYATPTGSNDDWYWLYAAIRCKCLMVTNDEMRDHTFQLLERDFFPKWKERHQV 666

Query: 729 RFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTRAN 781
           RF+F D+     MPPPCSVVIQESE G WHIP+ S++   +++R WLCVTR N
Sbjct: 667 RFNFEDSCVTLQMPPPCSVVIQESENGQWHIPVVSEEGSLEKDRTWLCVTRRN 719

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	874
TAIR|locus:2045432	572	PRORP1 "proteinaceous RNase P	0.482	0.737	0.509	3.2e-134
TAIR|locus:2141662	576	PRORP3 "AT4G21900" [Arabidopsi	0.473	0.718	0.440	7.4e-103
TAIR|locus:2059824	528	PRORP2 "proteinaceous RNase P	0.470	0.778	0.425	3.2e-102
TAIR|locus:2175178	156	AT5G60430 [Arabidopsis thalian	0.090	0.506	0.413	6e-12
MGI|MGI:1913382	584	1110008L16Rik "RIKEN cDNA 1110	0.258	0.386	0.236	2.1e-08
RGD|1305089	587	RGD1305089 "similar to 1110008	0.258	0.385	0.240	7.5e-08
UNIPROTKB|O15091	583	KIAA0391 "Mitochondrial ribonu	0.251	0.377	0.247	2.4e-07
TAIR|locus:2026192	630	RPF2 "rna processing factor 2"	0.358	0.496	0.229	6.6e-05
TAIR|locus:2065428	559	AT2G01740 "AT2G01740" [Arabido	0.137	0.214	0.258	0.00025
TAIR|locus:2197424	664	EMB3103 "EMBRYO DEFECTIVE 3103	0.139	0.183	0.237	0.00095

TAIR|locus:2045432 PRORP1 "proteinaceous RNase P 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1143 (407.4 bits), Expect = 3.2e-134, Sum P(2) = 3.2e-134
 Identities = 216/424 (50%), Positives = 288/424 (67%)

Query:   360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN 419
             +E +      RGF+I+++M +D+V  NEA+ T   R+A++  D +MAFDMVK+MK+ GI 
Sbjct:   149 TESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ 208

Query:   420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479
             PRLRSYGPAL  FC  GD DKA  V+ HM+E  V PEEPEL ALL+VS++    D+VY  
Sbjct:   209 PRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKT 268

Query:   480 LHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENXXXXXXXXXXXXX 539
             L +LR  VR+VS ST D+I +WF S+ A + G KKW+   I+D + +             
Sbjct:   269 LQRLRDLVRQVSKSTFDMIEEWFKSEVATKTGVKKWDVKKIRDAVVSGGGGWHGQGWLGT 328

Query:   540 XXXIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWL 599
                 V  T +  + +CKCC EKL  ID++P+ETE FA S+  +A +RE  ++F +FQ+WL
Sbjct:   329 GKWNVKRTEMDENGVCKCCKEKLVCIDINPVETETFAASLTRLACEREVKANFNQFQEWL 388

Query:   600 DYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMD 659
             + +GPF+AV+D AN+GL +QR+F   ++N  V   +Q  PSK+ PL++LH  R+ G    
Sbjct:   389 ERHGPFDAVIDGANMGLVNQRSFSFFQLNNTVQRCQQISPSKRLPLVILHKSRVNGGPAT 448

Query:   660 QPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFF 719
              P NRAL+EKWKNA ALYATP GSNDDWYWLYAA+  KCLLVTNDEMRDH FQLLGN FF
Sbjct:   449 YPKNRALLEKWKNAGALYATPPGSNDDWYWLYAAVSCKCLLVTNDEMRDHLFQLLGNSFF 508

Query:   720 PRWKERHQVRFSFS-DAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVT 778
             PRWKE+HQVR S + + G +  MPPP S+VIQESE G WH+P++ + D     R+WLC  
Sbjct:   509 PRWKEKHQVRISVTREDGLKLNMPPPYSIVIQESEDGTWHVPMSVEDDLQTS-RQWLCAK 567

Query:   779 RANS 782
             R+ +
Sbjct:   568 RSKT 571

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0004526 "ribonuclease P activity" evidence=IMP;IDA

GO:0008033 "tRNA processing" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2141662 PRORP3 "AT4G21900" [Arabidopsis thaliana (taxid:3702)]

 Score = 917 (327.9 bits), Expect = 7.4e-103, Sum P(2) = 7.4e-103
 Identities = 190/431 (44%), Positives = 264/431 (61%)

Query:   367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-IN-PRLRS 424
             A  RGF+I+++M    +  NE+S+TAV R+A + GDGD AF +VK + ++G ++ PRLR+
Sbjct:   148 AIDRGFQIFDRMVSSGISPNESSVTAVARLAAAKGDGDYAFKLVKDLVAVGGVSVPRLRT 207

Query:   425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
             Y PAL  FC+  + +K   VE+HM   G+  EE E+ ALL+VS   G+ ++VY  L KLR
Sbjct:   208 YAPALLCFCDTLEAEKGYEVEDHMDASGIVLEEAEISALLKVSAATGRENKVYRYLQKLR 267

Query:   485 TSVRKVSPSTADVIAKWFNSKEAARLGKKKWNES--LIKDTMENXXXXXXXXXXXXXXXX 542
               V  VS  T+  I +WF   +A+ +          L++  +                  
Sbjct:   268 ECVGCVSEETSKAIEEWFYGVKASEVSDNGIGSDIELLRAAVLKNGGGWHGLGWVGEGKW 327

Query:   543 IVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRER--NS-----SFQKF 595
             IV    V     C  C E LA +D + +ETE F  S+ ++A++R+   NS      F +F
Sbjct:   328 IVKKGNVSSAGKCLSCDEHLACVDTNEVETEDFVNSLVTLAMERKAKMNSCEPMADFSEF 387

Query:   596 QKWLDYYGPFEAVVDAANVGLYSQR----NFKPARVNAVVNGIRQKFPSKKWPLIVLHNR 651
             Q+WL+ +G +EA++D AN+GLY Q      F   ++ AVV  +  K  SKK PLI+LH +
Sbjct:   388 QEWLEKHGDYEAILDGANIGLYQQNFADGGFSLPQLEAVVKELYNKSGSKKQPLILLHKK 447

Query:   652 RITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTF 711
             R+    ++ P +R L+E+W N + LYATP GSNDDWYWLYAA K KCLLVTNDEMRDH F
Sbjct:   448 RVNA-LLENPNHRNLVEEWINNNVLYATPPGSNDDWYWLYAAAKLKCLLVTNDEMRDHIF 506

Query:   712 QLLGNDFFPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEE 771
             +LL N FF +WKERHQVRF+F     +  MPPP SVVIQESEKG+WH+PI S QD ++  
Sbjct:   507 ELLSNSFFQKWKERHQVRFTFVKGCLKLEMPPPFSVVIQESEKGSWHVPITS-QDKEESL 565

Query:   772 RRWLCVTRANS 782
             R W+C+TR +S
Sbjct:   566 RSWMCITRQSS 576

GO:0005215 "transporter activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=IDA

GO:0001682 "tRNA 5'-leader removal" evidence=IDA

GO:0004526 "ribonuclease P activity" evidence=IDA

GO:0006397 "mRNA processing" evidence=IMP

GO:0043144 "snoRNA processing" evidence=IMP

TAIR|locus:2059824 PRORP2 "proteinaceous RNase P 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 914 (326.8 bits), Expect = 3.2e-102, Sum P(2) = 3.2e-102
 Identities = 182/428 (42%), Positives = 264/428 (61%)

Query:   367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-IN-PRLRS 424
             A  RGFEI+++M    +  NEAS+T+V R+A + G+GD AF +VK   S+G ++ PRLR+
Sbjct:    89 AIDRGFEIFDRMVSSGISPNEASVTSVARLAAAKGNGDYAFKVVKEFVSVGGVSIPRLRT 148

Query:   425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
             Y PAL  FC   + +K   VEEHM   G+  EE E+ ALL+VS   G+ ++VY  LHKLR
Sbjct:   149 YAPALLCFCEKLEAEKGYEVEEHMEAAGIALEEAEISALLKVSAATGRENKVYRYLHKLR 208

Query:   485 TSVRKVSPSTADVIAKWFNSKEAARLGKKKWNES--LIKDTMENXXXXXXXXXXXXXXXX 542
               V  VS  T  +I +WF  ++A  +G         ++++ + N                
Sbjct:   209 EYVGCVSEETLKIIEEWFCGEKAGEVGDNGIGSDVGMLREAVLNNGGGWHGHGWVGEGKW 268

Query:   543 IVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKR-------ERNSSFQKF 595
              V    V     C  C E+LA +D + +ET+KF +S+ ++A+ R       E N  F +F
Sbjct:   269 TVKKGNVSSTGRCLSCSEQLACVDTNEVETQKFVDSLVALAMDRKTKMNSCETNVVFSEF 328

Query:   596 QKWLDYYGPFEAVVDAANVGLYSQR----NFKPARVNAVVNGIRQKFPSKKWPLIVLHNR 651
             Q WL+ +G +EA+VD AN+GLY Q     +F  +++ +V+  + ++  + KWPLI+LH R
Sbjct:   329 QDWLEKHGDYEAIVDGANIGLYQQNFVDGSFSLSQLESVMKELYRESGNNKWPLILLHKR 388

Query:   652 RITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTF 711
             R+    ++ P +R L+E+W +   LYATP GSNDDWYWLYAA K KCLLVTNDEMRDH F
Sbjct:   389 RVKT-LLENPTHRNLVEEWISNGVLYATPPGSNDDWYWLYAAAKLKCLLVTNDEMRDHIF 447

Query:   712 QLLGNDFFPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEE 771
             +LLG+ FF +WKERHQVR++F     +  MP P SVVIQESEKG+WH P++ + + ++  
Sbjct:   448 ELLGSTFFQKWKERHQVRYTFVKGNLKLEMPSPFSVVIQESEKGSWHFPVSCENN-EESS 506

Query:   772 RRWLCVTR 779
             R W+C++R
Sbjct:   507 RTWMCISR 514

GO:0005739 "mitochondrion" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0001682 "tRNA 5'-leader removal" evidence=IDA

GO:0004526 "ribonuclease P activity" evidence=IDA

GO:0006397 "mRNA processing" evidence=IMP

GO:0043144 "snoRNA processing" evidence=IMP

TAIR|locus:2175178 AT5G60430 [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 6.0e-12, P = 6.0e-12
 Identities = 36/87 (41%), Positives = 55/87 (63%)

Query:   543 IVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRER--NSS-----FQKF 595
             IV    V     C  C E+LA +D + +ET+KF +S+ ++A++R+   NS      F +F
Sbjct:    25 IVKKGNVSSTGRCLSCSEQLACVDTNEVETQKFVDSLVALAMERKAKMNSCESDVVFSEF 84

Query:   596 QKWLDYYGPFEAVVDAANVGLYSQRNF 622
             Q WL+ +G +EA+VD AN+GLY Q+NF
Sbjct:    85 QDWLEKHGDYEAIVDGANIGLY-QQNF 110

GO:0005739 "mitochondrion" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

MGI|MGI:1913382 1110008L16Rik "RIKEN cDNA 1110008L16 gene" [Mus musculus (taxid:10090)]

 Score = 152 (58.6 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
 Identities = 59/249 (23%), Positives = 100/249 (40%)

Query:   547 TTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNSSFQKFQKWLD 600
             TT+     C  CG  +  I L P E E   E +    I      K+      ++F+ +++
Sbjct:   337 TTIQKSGQCSGCGRTIEPIHLSPEEYEFLKEKIMRDVIDGGDQYKKTTPQELKRFESFVN 396

Query:   601 YYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQ 660
                PF+ V+D  NV     + F   R +  + G+  +   +   L+VL  + +      Q
Sbjct:   397 SCPPFDIVIDGLNVA----KMFPKGRESQNLLGVVSQLAQQNLQLLVLGRKHML-RPSSQ 451

Query:   661 PVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHTFQLLG--- 715
                  + +  K A   +A    S DD + LYA +     C  +T D +RDH   L     
Sbjct:   452 WRKEEMEQVRKQAHCFFADNI-SEDDPFLLYATLNSGNHCKFITKDLLRDHKACLPDART 510

Query:   716 NDFFPRWKERHQVRF--SFSDAGPEFYMPPPCSVVIQESEKGNWHIPIAS---KQDYDDE 770
                F +W++ HQ+     F  +   F        V+Q +   +WHIP      ++   + 
Sbjct:   511 QRLFFKWQQGHQLAIMKGFQKSKLTFQHILSYDTVVQRTGD-SWHIPYDEDLVQRSSCEV 569

Query:   771 ERRWLCVTR 779
               +WLC+ R
Sbjct:   570 PTKWLCLQR 578

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005739 "mitochondrion" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0008150 "biological_process" evidence=ND

RGD|1305089 RGD1305089 "similar to 1110008L16Rik protein" [Rattus norvegicus (taxid:10116)]

 Score = 152 (58.6 bits), Expect = 7.5e-08, Sum P(3) = 7.5e-08
 Identities = 60/249 (24%), Positives = 100/249 (40%)

Query:   547 TTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNSSFQKFQKWLD 600
             TT+     C  CG  +  I L P E E   E++    I      K+      ++F++++ 
Sbjct:   340 TTIQKSGQCSSCGRAIESIHLSPEEYEFLKETIMRDVIDGGDQYKKTTPQELKRFERFVK 399

Query:   601 YYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQ 660
                PF+ V+D  NV     + F   R +  + GI  +   +   L+VL  + +      Q
Sbjct:   400 SCPPFDIVIDGLNVA----KMFPKGRESQNLLGIVSQLAQQNLQLLVLGRKHML-RPSSQ 454

Query:   661 PVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHTFQL---LG 715
                  + +  K A   +A    S DD + LYA +     C  +T D +RDH   L     
Sbjct:   455 WRKDEMEQVRKQAHCFFADNI-SEDDPFLLYATLNSGSHCKFITKDLLRDHKACLPDARA 513

Query:   716 NDFFPRWKERHQVRFS--FSDAGPEFYMPPPCSVVIQESEKGNWHIPIASK---QDYDDE 770
                F +W++ HQ+  +  F  +   F        V+Q +    WHIP       +   + 
Sbjct:   514 QRLFFKWQQGHQLAITKGFLKSKLTFQHILSYDTVVQTTGD-TWHIPYDEDLVPRSSCEV 572

Query:   771 ERRWLCVTR 779
               +WLC+ R
Sbjct:   573 PTKWLCLQR 581

GO:0005739 "mitochondrion" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

UNIPROTKB|O15091 KIAA0391 "Mitochondrial ribonuclease P protein 3" [Homo sapiens (taxid:9606)]

 Score = 146 (56.5 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
 Identities = 62/251 (24%), Positives = 100/251 (39%)

Query:   547 TTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNSSFQKFQKWLD 600
             TTV     C  CG+ +  I L P E E     +    I      ++      ++F+ ++ 
Sbjct:   340 TTVRKSGQCSGCGKTIESIQLSPEEYECLKGKIMRDVIDGGDQYRKTTPQELKRFENFIK 399

Query:   601 YYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQ 660
                PF+ V+D  NV     + F   R + ++  +  +   +   L+VL  + +   +  Q
Sbjct:   400 SRPPFDVVIDGLNVA----KMFPKVRESQLLLNVVSQLAKRNLRLLVLGRKHML-RRSSQ 454

Query:   661 PVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHTFQLLG--- 715
                  + E  K A   +A    S DD + LYA +     C  +T D MRDH   L     
Sbjct:   455 WSRDEMEEVQKQASCFFADDI-SEDDPFLLYATLHSGNHCRFITRDLMRDHKACLPDAKT 513

Query:   716 NDFFPRWKERHQVRF--SFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEER- 772
                F +W++ HQ+     F  +   F        V+Q +   +WHIP     D D  ER 
Sbjct:   514 QRLFFKWQQGHQLAIVNRFPGSKLTFQRILSYDTVVQTTGD-SWHIPY----DEDLVERC 568

Query:   773 ------RWLCV 777
                   +WLC+
Sbjct:   569 SCEVPTKWLCL 579

GO:0008033 "tRNA processing" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 6.6e-05, P = 6.6e-05
 Identities = 80/349 (22%), Positives = 154/349 (44%)

Query:   200 MCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLY-LCS----SAAVGVVKPAKSGSGMR 254
             +C KRGD   A  L +K ++  ++ G   YN ++  LC       A+ + K  ++  G+R
Sbjct:   231 LC-KRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMET-KGIR 288

Query:   255 TLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG 314
               +    S++ S      R  D +  L    S MI++  +   + F  L   F ++  L 
Sbjct:   289 P-NVVTYSSLISCLCNYGRWSDASRLL----SDMIERKINPDVFTFSALIDAFVKEGKLV 343

Query:   315 QFSNGHMKLNSQLLDGR----SNLERG---PD--DQSRKK-DWSIDNQDADEI----RLS 360
             +    + ++  + +D      S+L  G    D  D++++  ++ +      ++     L 
Sbjct:   344 EAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLI 403

Query:   361 EDAKKYA-FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN 419
             +   KY   + G E++ +M    +  N  +   + +     GD DMA ++ K M S G+ 
Sbjct:   404 KGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVP 463

Query:   420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479
             P + +Y   L   C NG ++KA  V E++    + P       ++    +AGK +  + L
Sbjct:   464 PNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDL 523

Query:   480 LHKLRTSVRKVSPSTADVIAKWFNSKEAA--RLGKKKWNESLIKDTMEN 526
                L  S++ V P   DV+A  +N+  +   R G K+  ++L K+  E+
Sbjct:   524 FCNL--SLKGVKP---DVVA--YNTMISGFCRKGSKEEADALFKEMKED 565

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0000966 "RNA 5'-end processing" evidence=IMP

GO:0003723 "RNA binding" evidence=IDA

TAIR|locus:2065428 AT2G01740 "AT2G01740" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 0.00025, P = 0.00025
 Identities = 31/120 (25%), Positives = 53/120 (44%)

Query:   364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR 423
             KK   QR  E+Y +M  D V  N    T +       GD D A   + +M + G+   + 
Sbjct:   245 KKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDIT 304

Query:   424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
             +YG  +S  C NG + +A  + E M +  + P+      ++    ++G+      + HKL
Sbjct:   305 AYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHKL 364

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2197424 EMB3103 "EMBRYO DEFECTIVE 3103" [Arabidopsis thaliana (taxid:3702)]

 Score = 105 (42.0 bits), Expect = 0.00095, Sum P(2) = 0.00095
 Identities = 29/122 (23%), Positives = 57/122 (46%)

Query:   365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS 424
             K  + +  E+  ++  + + M+      V  +  S G  + A + +++MK  G +P +  
Sbjct:   215 KNGYPKAIELIGELPHNGIQMDSVMYGTVLAICASNGRSEEAENFIQQMKVEGHSPNIYH 274

Query:   425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
             Y   L+ +   GD  KA  +   M   G+ P +  +  LL+V ++ G  DR   LL +L 
Sbjct:   275 YSSLLNSYSWKGDYKKADELMTEMKSIGLVPNKVMMTTLLKVYIKGGLFDRSRELLSELE 334

Query:   485 TS 486
             ++
Sbjct:   335 SA 336

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00016721001 SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (756 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	874
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	5e-05
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	0.002
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	0.003

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 46.8 bits (111), Expect = 5e-05
 Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 2/122 (1%)

Query: 367 AFQRGFEIYEKMCLDEVPMNEASLT--AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS 424
           A  R F++  +M  +  P++   +T  A+ +   + G  D A ++ + +    I      
Sbjct: 557 AVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV 616

Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
           Y  A++     GD D A S+ + M + GV P+E    AL+ V+  AG  D+ + +L   R
Sbjct: 617 YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDAR 676

Query: 485 TS 486
             
Sbjct: 677 KQ 678

Length = 1060

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 41.8 bits (98), Expect = 0.002
 Identities = 25/113 (22%), Positives = 48/113 (42%)

Query: 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433
           IY+ M    V  +E   +A+  +A   GD D AF++++  +  GI     SY   +    
Sbjct: 636 IYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACS 695

Query: 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486
           N  +  KA  + E +    + P    + AL+    E  +  +   +L +++  
Sbjct: 696 NAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL 748

Length = 1060

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 36.0 bits (84), Expect = 0.003
 Identities = 12/34 (35%), Positives = 15/34 (44%)

Query: 422 LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP 455
           L +Y   L      GD D A +V E M   G+ P
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	874
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PF11977	155	RNase_Zc3h12a: Zc3h12a-like Ribonuclease NYN domai	99.82
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.66
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.54
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.48
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.44
PF13041	50	PPR_2: PPR repeat family	99.27
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.27
PF13041	50	PPR_2: PPR repeat family	99.23
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.08
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	98.98
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.93
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.81
PF12854	34	PPR_1: PPR repeat	98.53
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	98.53
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	98.53
PF12854	34	PPR_1: PPR repeat	98.52
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	98.49
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.48
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.43
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.42
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.4
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.36
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.34
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.31
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.28
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.23
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.17
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.16
PRK14574	822	hmsH outer membrane protein; Provisional	98.1
KOG1126	638	consensus DNA-binding cell division cycle control	98.07
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	97.99
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	97.96
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	97.92
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	97.9
PRK14574	822	hmsH outer membrane protein; Provisional	97.89
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.85
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.82
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	97.81
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	97.75
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	97.75
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.73
PRK12370	553	invasion protein regulator; Provisional	97.72
PRK12370	553	invasion protein regulator; Provisional	97.61
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.54
KOG2003	840	consensus TPR repeat-containing protein [General f	97.53
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	97.52
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.5
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	97.41
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.3
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.28
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	97.18
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.14
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.13
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.1
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.07
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	96.91
KOG2076	895	consensus RNA polymerase III transcription factor	96.81
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.76
KOG1129	478	consensus TPR repeat-containing protein [General f	96.75
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	96.66
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	96.5
PRK11189	296	lipoprotein NlpI; Provisional	96.49
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	96.43
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	96.41
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	96.41
KOG2003	840	consensus TPR repeat-containing protein [General f	96.39
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	96.35
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	96.32
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	96.31
KOG2076	895	consensus RNA polymerase III transcription factor	96.01
KOG1126	638	consensus DNA-binding cell division cycle control	95.98
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	95.93
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	95.9
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	95.89
PRK11189	296	lipoprotein NlpI; Provisional	95.89
KOG0495	913	consensus HAT repeat protein [RNA processing and m	95.69
TIGR02552	135	LcrH_SycD type III secretion low calcium response	95.54
KOG1128	777	consensus Uncharacterized conserved protein, conta	95.5
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	95.47
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	95.43
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	95.41
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	95.37
KOG3785	557	consensus Uncharacterized conserved protein [Funct	95.23
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	95.17
TIGR02552	135	LcrH_SycD type III secretion low calcium response	95.1
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	95.07
COG4783	484	Putative Zn-dependent protease, contains TPR repea	95.06
PRK15359	144	type III secretion system chaperone protein SscB;	94.94
PRK15359	144	type III secretion system chaperone protein SscB;	94.92
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	94.92
PRK10370	198	formate-dependent nitrite reductase complex subuni	94.91
KOG3785	557	consensus Uncharacterized conserved protein [Funct	94.85
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	94.74
KOG4340	459	consensus Uncharacterized conserved protein [Funct	94.73
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	94.72
KOG3941	406	consensus Intermediate in Toll signal transduction	94.63
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	94.63
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	94.59
KOG1915	677	consensus Cell cycle control protein (crooked neck	94.33
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	94.28
KOG3616	1636	consensus Selective LIM binding factor [Transcript	94.23
KOG0547	606	consensus Translocase of outer mitochondrial membr	94.18
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	94.16
KOG2047	835	consensus mRNA splicing factor [RNA processing and	94.14
PRK04841	903	transcriptional regulator MalT; Provisional	93.9
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	93.84
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	93.76
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	93.7
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	93.61
PRK04841	903	transcriptional regulator MalT; Provisional	93.6
KOG0547	606	consensus Translocase of outer mitochondrial membr	93.59
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	93.52
KOG3616	1636	consensus Selective LIM binding factor [Transcript	93.46
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	93.42
KOG0495	913	consensus HAT repeat protein [RNA processing and m	93.38
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	93.32
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	93.25
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	93.12
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	93.02
KOG3777	443	consensus Uncharacterized conserved protein [Funct	92.94
PRK14720	906	transcript cleavage factor/unknown domain fusion p	92.81
COG4783	484	Putative Zn-dependent protease, contains TPR repea	92.66
KOG1129	478	consensus TPR repeat-containing protein [General f	92.56
KOG2376	652	consensus Signal recognition particle, subunit Srp	92.46
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	92.29
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	92.09
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	92.03
PRK10370	198	formate-dependent nitrite reductase complex subuni	91.98
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	91.78
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	91.55
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	91.48
KOG3941	406	consensus Intermediate in Toll signal transduction	91.43
KOG4340	459	consensus Uncharacterized conserved protein [Funct	91.32
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	91.18
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	91.18
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	91.13
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	91.13
KOG2376	652	consensus Signal recognition particle, subunit Srp	91.09
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	90.97
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	90.91
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	90.8
smart00299	140	CLH Clathrin heavy chain repeat homology.	90.79
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	90.61
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	90.61
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	90.4
PF03704	146	BTAD: Bacterial transcriptional activator domain;	90.31
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	90.15
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	89.89
KOG1915	677	consensus Cell cycle control protein (crooked neck	89.86
PLN02789	320	farnesyltranstransferase	89.77
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	89.22
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	89.03
PF03704	146	BTAD: Bacterial transcriptional activator domain;	88.96
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	88.35
PRK10803	263	tol-pal system protein YbgF; Provisional	88.27
PF12688	120	TPR_5: Tetratrico peptide repeat	88.15
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	87.52
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	87.4
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	87.18
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	87.16
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	86.49
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	85.98
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	85.68
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	84.67
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	84.67
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	84.3
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	84.22
KOG2047	835	consensus mRNA splicing factor [RNA processing and	83.93
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	82.06
KOG2796	366	consensus Uncharacterized conserved protein [Funct	80.93
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	80.67
PF12688	120	TPR_5: Tetratrico peptide repeat	80.59
PF13371	73	TPR_9: Tetratricopeptide repeat	80.43

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=6.3e-49  Score=486.81  Aligned_cols=512  Identities=11%  Similarity=0.073  Sum_probs=389.6

Q ss_pred             Ccchhhhhhcccccccccccccc-cccc-cceeeeeecccCccCCCCCCccccccccccccccccccccccchhhhhhhh
Q 002846           48 RTPLLVFKAHVRNTQAKLSTTET-EHET-STVTLRTRKGTASGASSLGTRDKRVDSAGEEKDGKRLTKDNNSRKNFAFLK  125 (874)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (874)
                      |..++.+.....+...++.+-|. +..+ ...+..++..........|...+....+..-..   -....|..-.-.+++
T Consensus       373 ~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~---pd~~Tyn~LL~a~~k  449 (1060)
T PLN03218        373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN---PTLSTFNMLMSVCAS  449 (1060)
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC---CCHHHHHHHHHHHHh
Confidence            34444444444455556666665 2222 223333333333333344443333322221111   111223334445566


Q ss_pred             ccCCCCCCCcccccccccccccchhhhhhhchHHHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcC
Q 002846          126 SREMSSGNSSLRSKDKKIGIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRG  205 (874)
Q Consensus       126 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G  205 (874)
                      .|....+..-+..+.......+..++|..+.  .+++.++.++|.++|++|...      |+.||+++||+||.+|++.|
T Consensus       450 ~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~--~y~k~G~vd~A~~vf~eM~~~------Gv~PdvvTynaLI~gy~k~G  521 (1060)
T PLN03218        450 SQDIDGALRVLRLVQEAGLKADCKLYTTLIS--TCAKSGKVDAMFEVFHEMVNA------GVEANVHTFGALIDGCARAG  521 (1060)
T ss_pred             CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHhCcCHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHHCc
Confidence            6766666666666666667778889999998  999999999999999999544      56777799999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhc-CCCC-chhhhHh
Q 002846          206 DVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS-RDMD-NNGQLDY  283 (874)
Q Consensus       206 ~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~-~gi~-d~vtyn~  283 (874)
                      ++++|+++|++|.+.|+.||..|||+||.+|+          +.|++++|.++|.       +|... .|+. |.++||+
T Consensus       522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~----------k~G~~deA~~lf~-------eM~~~~~gi~PD~vTyna  584 (1060)
T PLN03218        522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACG----------QSGAVDRAFDVLA-------EMKAETHPIDPDHITVGA  584 (1060)
T ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----------HCCCHHHHHHHHH-------HHHHhcCCCCCcHHHHHH
Confidence            99999999999999999999999999999999          8899999999994       77653 3565 8899999


Q ss_pred             hhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeec--------cccHHHHHHhhhcC-----CCCcccccccccc
Q 002846          284 GSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL--------NSQLLDGRSNLERG-----PDDQSRKKDWSID  350 (874)
Q Consensus       284 LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~--------~g~~~eA~~l~~~m-----~pd~~ty~~w~i~  350 (874)
                      ||++      ||+.|++++|.++|++|.+.|+.|+.++|+        .|++++|..+|++|     .||.++|      
T Consensus       585 LI~a------y~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Ty------  652 (1060)
T PLN03218        585 LMKA------CANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFF------  652 (1060)
T ss_pred             HHHH------HHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH------
Confidence            9999      999999999999999999999999999998        89999999999999     7999999      


Q ss_pred             cCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHH
Q 002846          351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS  430 (874)
Q Consensus       351 ~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~  430 (874)
                           ++||++|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+||+||.
T Consensus       653 -----nsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~  727 (1060)
T PLN03218        653 -----SALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALIT  727 (1060)
T ss_pred             -----HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence                 999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCChhHHHHHHHHHhcchHHHh
Q 002846          431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARL  510 (874)
Q Consensus       431 a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~T~~~I~~~~~s~~~~~a  510 (874)
                      +||+.|++++|.++|++|...|+.||..||++||.+|++.|++++|.++|.+|.+.+..++..+|+.|.++|... ..++
T Consensus       728 gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~-y~ka  806 (1060)
T PLN03218        728 ALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRR-FEKA  806 (1060)
T ss_pred             HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH-HHHH
Confidence            999999999999999999999999999999999999999999999999999999995555555898877876531 1122


Q ss_pred             hhh-----hch-------hHHHHHHHhhcCCcccccccCCCCCceeEeecccccccccccCccccc-----ccCCH--HH
Q 002846          511 GKK-----KWN-------ESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAI-----IDLDP--IE  571 (874)
Q Consensus       511 ~~~-----~~d-------~~~v~ea~~~~G~~~~~m~~~G~~p~~vt~t~vl~~G~C~~c~~~L~~-----i~l~~--ee  571 (874)
                      +..     .|+       .....+|+.    +|++|...|+.|+.++|..++ .+.|...+..+..     +.+.+  ..
T Consensus       807 ~~l~~~v~~f~~g~~~~~n~w~~~Al~----lf~eM~~~Gi~Pd~~T~~~vL-~cl~~~~~~~~~~~m~~~m~~~~~~~~  881 (1060)
T PLN03218        807 CALGEPVVSFDSGRPQIENKWTSWALM----VYRETISAGTLPTMEVLSQVL-GCLQLPHDATLRNRLIENLGISADSQK  881 (1060)
T ss_pred             hhhhhhhhhhhccccccccchHHHHHH----HHHHHHHCCCCCCHHHHHHHH-HHhcccccHHHHHHHHHHhccCCCCcc
Confidence            110     011       112244555    889999999999999996655 5555555432211     11111  11


Q ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCcchhhhhh
Q 002846          572 TEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAVVDAA  612 (874)
Q Consensus       572 ~~~l~~~I~~~a~~~~~~~~~~~F~~~l~~~~pyDiVIDGa  612 (874)
                      +..+...|-++  .....+++..|.+|+..+..+++..+-.
T Consensus       882 ~~~y~~Li~g~--~~~~~~A~~l~~em~~~Gi~p~~~~~~~  920 (1060)
T PLN03218        882 QSNLSTLVDGF--GEYDPRAFSLLEEAASLGVVPSVSFKKS  920 (1060)
T ss_pred             hhhhHHHHHhh--ccChHHHHHHHHHHHHcCCCCCcccccC
Confidence            22222222221  1123578999999999987777765443

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=7.3e-48  Score=477.36  Aligned_cols=399  Identities=14%  Similarity=0.110  Sum_probs=318.8

Q ss_pred             ccchhhhhhhchHHHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 002846          146 KSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG  225 (874)
Q Consensus       146 ~~~~~~~~~l~~~~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd  225 (874)
                      +...+||..+.  .+++.++.+.|.++|++|...      |+.||+++||+||.+|++.|++++|+++|++|.+.|+.||
T Consensus       435 pd~~Tyn~LL~--a~~k~g~~e~A~~lf~~M~~~------Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pd  506 (1060)
T PLN03218        435 PTLSTFNMLMS--VCASSQDIDGALRVLRLVQEA------GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEAN  506 (1060)
T ss_pred             CCHHHHHHHHH--HHHhCcCHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCC
Confidence            67788888888  888999999999999999554      4667779999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCC-chhhhHhhhcCcccChhhhhcCChHHHH
Q 002846          226 QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLD  304 (874)
Q Consensus       226 ~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~-d~vtyn~LI~~~~~~~~~~~~g~~e~A~  304 (874)
                      .+|||+||.+|+          +.|++++|.++|.       +|... |+. |.++||+||.+      ||+.|++++|.
T Consensus       507 vvTynaLI~gy~----------k~G~~eeAl~lf~-------~M~~~-Gv~PD~vTYnsLI~a------~~k~G~~deA~  562 (1060)
T PLN03218        507 VHTFGALIDGCA----------RAGQVAKAFGAYG-------IMRSK-NVKPDRVVFNALISA------CGQSGAVDRAF  562 (1060)
T ss_pred             HHHHHHHHHHHH----------HCcCHHHHHHHHH-------HHHHc-CCCCCHHHHHHHHHH------HHHCCCHHHHH
Confidence            999999999999          8899999999994       77766 775 88889999999      99999999999


Q ss_pred             HHHHHHHH--cCCCCCeeeec--------cccHHHHHHhhhcC-----CCCcccccccccccCCccchHHHHHHhcCCHH
Q 002846          305 STFNEKEN--LGQFSNGHMKL--------NSQLLDGRSNLERG-----PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQ  369 (874)
Q Consensus       305 ~lf~eM~~--~Gi~Pd~~ty~--------~g~~~eA~~l~~~m-----~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~  369 (874)
                      ++|++|..  .|+.||.++|+        .|++++|..+|++|     .|+..+|           |++|.+|++.|+++
T Consensus       563 ~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~ty-----------nsLI~ay~k~G~~d  631 (1060)
T PLN03218        563 DVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVY-----------TIAVNSCSQKGDWD  631 (1060)
T ss_pred             HHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHH-----------HHHHHHHHhcCCHH
Confidence            99999976  67899999998        88999999999998     6788899           99999999999999


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHH
Q 002846          370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHML  449 (874)
Q Consensus       370 ~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~  449 (874)
                      +|.++|++|...|+.||..||++||++|++.|++++|+++|++|.+.|+.||..+|++||.+||+.|++++|.++|++|.
T Consensus       632 eAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~  711 (1060)
T PLN03218        632 FALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK  711 (1060)
T ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCChhHHHH-HHHHHhcchHHHhhhhhchhHHHHHHHhhcC
Q 002846          450 EHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWFNSKEAARLGKKKWNESLIKDTMENKG  528 (874)
Q Consensus       450 ~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~T~~~-I~~~~~s~~~~~a~~~~~d~~~v~ea~~~~G  528 (874)
                      +.|+.||..+||+||.+|++.|++++|.++|++|...+..|...||++ |.++++.+..             .+|..   
T Consensus       712 ~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~l-------------e~A~~---  775 (1060)
T PLN03218        712 SIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA-------------DVGLD---  775 (1060)
T ss_pred             HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH-------------HHHHH---
Confidence            999999999999999999999999999999999998844444448887 5555555543             33333   


Q ss_pred             CcccccccCCCCCceeEeecccccccccccCcccccccCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCcchh
Q 002846          529 GGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAV  608 (874)
Q Consensus       529 ~~~~~m~~~G~~p~~vt~t~vl~~G~C~~c~~~L~~i~l~~ee~~~l~~~I~~~a~~~~~~~~~~~F~~~l~~~~pyDiV  608 (874)
                       ++..|...|+.|+.++|.. ++ |.|...  --.+..+. +....|.. .......+-...++..|++|++.+-.||.+
T Consensus       776 -l~~~M~k~Gi~pd~~tyns-LI-glc~~~--y~ka~~l~-~~v~~f~~-g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~  848 (1060)
T PLN03218        776 -LLSQAKEDGIKPNLVMCRC-IT-GLCLRR--FEKACALG-EPVVSFDS-GRPQIENKWTSWALMVYRETISAGTLPTME  848 (1060)
T ss_pred             -HHHHHHHcCCCCCHHHHHH-HH-HHHHHH--HHHHhhhh-hhhhhhhc-cccccccchHHHHHHHHHHHHHCCCCCCHH
Confidence             6677888889999988844 44 565421  00001110 00111100 000001122346888999999888666654


Q ss_pred             hh
Q 002846          609 VD  610 (874)
Q Consensus       609 ID  610 (874)
                      .=
T Consensus       849 T~  850 (1060)
T PLN03218        849 VL  850 (1060)
T ss_pred             HH
Confidence            33

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=4.8e-46  Score=463.35  Aligned_cols=420  Identities=12%  Similarity=0.022  Sum_probs=307.2

Q ss_pred             ccchhhhhhhchHHHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 002846          146 KSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG  225 (874)
Q Consensus       146 ~~~~~~~~~l~~~~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd  225 (874)
                      +...+||..+.  .+++.++.++|+++|++|...      |+.||.+||+++|.+|++.+++..+.+++..|.+.|+.||
T Consensus       150 ~d~~~~n~li~--~~~~~g~~~~A~~~f~~M~~~------g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~  221 (857)
T PLN03077        150 RDLFSWNVLVG--GYAKAGYFDEALCLYHRMLWA------GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELD  221 (857)
T ss_pred             CCeeEHHHHHH--HHHhCCCHHHHHHHHHHHHHc------CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcc
Confidence            34556666666  666777777777777777433      3445556666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHH
Q 002846          226 QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDS  305 (874)
Q Consensus       226 ~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~  305 (874)
                      ..+||+||.+|+          ++|++++|..+|+       +|...    |+++||+||.+      |++.|++++|.+
T Consensus       222 ~~~~n~Li~~y~----------k~g~~~~A~~lf~-------~m~~~----d~~s~n~li~~------~~~~g~~~eAl~  274 (857)
T PLN03077        222 VDVVNALITMYV----------KCGDVVSARLVFD-------RMPRR----DCISWNAMISG------YFENGECLEGLE  274 (857)
T ss_pred             cchHhHHHHHHh----------cCCCHHHHHHHHh-------cCCCC----CcchhHHHHHH------HHhCCCHHHHHH
Confidence            666666666666          8888888888885       55432    77888888888      888888888888


Q ss_pred             HHHHHHHcCCCCCeeeec-------------------------------------------cccHHHHHHhhhcC-CCCc
Q 002846          306 TFNEKENLGQFSNGHMKL-------------------------------------------NSQLLDGRSNLERG-PDDQ  341 (874)
Q Consensus       306 lf~eM~~~Gi~Pd~~ty~-------------------------------------------~g~~~eA~~l~~~m-~pd~  341 (874)
                      +|.+|...|+.||.+||+                                           .|++++|..+|++| .||+
T Consensus       275 lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~  354 (857)
T PLN03077        275 LFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDA  354 (857)
T ss_pred             HHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCe
Confidence            888888888888877776                                           57788888888888 7888


Q ss_pred             ccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 002846          342 SRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR  421 (874)
Q Consensus       342 ~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd  421 (874)
                      ++|           |+||.+|++.|++++|+++|++|...|+.||..||+++|.+|++.|++++|.++++.|.+.|+.|+
T Consensus       355 ~s~-----------n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~  423 (857)
T PLN03077        355 VSW-----------TAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISY  423 (857)
T ss_pred             eeH-----------HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcc
Confidence            888           888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 002846          422 LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKW  501 (874)
Q Consensus       422 ~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~T~~~I~~~  501 (874)
                      ..+||+||.+|+++|++++|.++|++|.+    +|..+|++||.+|++.|+.++|..+|++|... ..|...||..+...
T Consensus       424 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~-~~pd~~t~~~lL~a  498 (857)
T PLN03077        424 VVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSA  498 (857)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC-CCCCHhHHHHHHHH
Confidence            88888888888888888888888888865    67788888888888888888888888888753 33333477774444


Q ss_pred             HhcchHHHhhhhhchhHHHHHHHhhcCCcccccccCCCCCceeEeecccccccccccCccc--ccccCCHHHHHHHHHHH
Q 002846          502 FNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKL--AIIDLDPIETEKFAESV  579 (874)
Q Consensus       502 ~~s~~~~~a~~~~~d~~~v~ea~~~~G~~~~~m~~~G~~p~~vt~t~vl~~G~C~~c~~~L--~~i~l~~ee~~~l~~~I  579 (874)
                      |......+.+            .+    ++..|...|+.++...+ +.+++++|+++...-  ..++-.+.+...|...|
T Consensus       499 ~~~~g~l~~~------------~~----i~~~~~~~g~~~~~~~~-naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI  561 (857)
T PLN03077        499 CARIGALMCG------------KE----IHAHVLRTGIGFDGFLP-NALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILL  561 (857)
T ss_pred             HhhhchHHHh------------HH----HHHHHHHhCCCccceec-hHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHH
Confidence            4432221211            11    34445667888898888 778899988876432  22222245677889999


Q ss_pred             HHHHHhccchHHHHHHHHHHhhcCCcchhhhhhhhhccccCCCChhhHHHHHHHHHHh
Q 002846          580 ASIAIKRERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQK  637 (874)
Q Consensus       580 ~~~a~~~~~~~~~~~F~~~l~~~~pyDiVIDGaNv~~~~~~~f~~~~l~~vv~~l~~~  637 (874)
                      ..++.+|...++++.|.+|.+.+..+|.+.=..-+.-|.+.|    .++.+.+.|.++
T Consensus       562 ~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g----~v~ea~~~f~~M  615 (857)
T PLN03077        562 TGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG----MVTQGLEYFHSM  615 (857)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcC----hHHHHHHHHHHH
Confidence            999999999999999999999876666654433333343333    355555555554

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=7.8e-44  Score=433.99  Aligned_cols=416  Identities=12%  Similarity=0.088  Sum_probs=346.7

Q ss_pred             cchhhhhhhchHHHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 002846          147 SSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ  226 (874)
Q Consensus       147 ~~~~~~~~l~~~~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~  226 (874)
                      ...++|..+.  .+.+.++..+|+++|+.|...+     +..||..+|+++|.+|++.++++.|.+++..|.+.|+.||.
T Consensus        86 ~~~~~~~~i~--~l~~~g~~~~Al~~f~~m~~~~-----~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~  158 (697)
T PLN03081         86 SGVSLCSQIE--KLVACGRHREALELFEILEAGC-----PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQ  158 (697)
T ss_pred             CceeHHHHHH--HHHcCCCHHHHHHHHHHHHhcC-----CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcch
Confidence            4456777777  8889999999999999995432     35688899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHH
Q 002846          227 YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDST  306 (874)
Q Consensus       227 ~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~l  306 (874)
                      .+||.||++|+          ++|++++|..+|+       +|.+    +|+++||+||.+      |++.|++++|.++
T Consensus       159 ~~~n~Li~~y~----------k~g~~~~A~~lf~-------~m~~----~~~~t~n~li~~------~~~~g~~~~A~~l  211 (697)
T PLN03081        159 YMMNRVLLMHV----------KCGMLIDARRLFD-------EMPE----RNLASWGTIIGG------LVDAGNYREAFAL  211 (697)
T ss_pred             HHHHHHHHHHh----------cCCCHHHHHHHHh-------cCCC----CCeeeHHHHHHH------HHHCcCHHHHHHH
Confidence            99999999999          9999999999995       6654    389999999999      9999999999999


Q ss_pred             HHHHHHcCCCCCeeee-----------------------------------c--------cccHHHHHHhhhcC-CCCcc
Q 002846          307 FNEKENLGQFSNGHMK-----------------------------------L--------NSQLLDGRSNLERG-PDDQS  342 (874)
Q Consensus       307 f~eM~~~Gi~Pd~~ty-----------------------------------~--------~g~~~eA~~l~~~m-~pd~~  342 (874)
                      |++|.+.|+.||..||                                   +        +|++++|..+|++| .+|++
T Consensus       212 f~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~v  291 (697)
T PLN03081        212 FREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTV  291 (697)
T ss_pred             HHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChh
Confidence            9999988877776655                                   3        78999999999999 89999


Q ss_pred             cccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc
Q 002846          343 RKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL  422 (874)
Q Consensus       343 ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~  422 (874)
                      +|           |+||.+|++.|+.++|+++|++|...|+.||..||++||.+|++.|++++|.+++.+|.+.|+.||.
T Consensus       292 t~-----------n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~  360 (697)
T PLN03081        292 AW-----------NSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDI  360 (697)
T ss_pred             HH-----------HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCe
Confidence            99           9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCChhHHHH-HHHH
Q 002846          423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKW  501 (874)
Q Consensus       423 ~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~T~~~-I~~~  501 (874)
                      .+||+||.+||++|++++|.++|++|.+    ||..+||+||.+|++.|+.++|.++|++|...+..|+..||+. |.++
T Consensus       361 ~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~  436 (697)
T PLN03081        361 VANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC  436 (697)
T ss_pred             eehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence            9999999999999999999999999975    8999999999999999999999999999999955555559988 5555


Q ss_pred             HhcchHHHhhhhhchhHHHHHHHhhcCCccccccc-CCCCCceeEeecccccccccccCccc--ccc---cCCHHHHHHH
Q 002846          502 FNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGW-LGKGKWIVSHTTVGGDALCKCCGEKL--AII---DLDPIETEKF  575 (874)
Q Consensus       502 ~~s~~~~~a~~~~~d~~~v~ea~~~~G~~~~~m~~-~G~~p~~vt~t~vl~~G~C~~c~~~L--~~i---~l~~ee~~~l  575 (874)
                      +..+.             ++++.+    .|..|.. .|+.|+..+| +.+++++|+.+...-  ..+   .+.+ +...|
T Consensus       437 ~~~g~-------------~~~a~~----~f~~m~~~~g~~p~~~~y-~~li~~l~r~G~~~eA~~~~~~~~~~p-~~~~~  497 (697)
T PLN03081        437 RYSGL-------------SEQGWE----IFQSMSENHRIKPRAMHY-ACMIELLGREGLLDEAYAMIRRAPFKP-TVNMW  497 (697)
T ss_pred             hcCCc-------------HHHHHH----HHHHHHHhcCCCCCccch-HhHHHHHHhcCCHHHHHHHHHHCCCCC-CHHHH
Confidence            44444             344444    6777764 6999999999 778899998886432  222   1122 23346


Q ss_pred             HHHHHHHHHhccchHHHHHHHHHHhhcC----CcchhhhhhhhhccccCCCChhhHHHHHHHHHH
Q 002846          576 AESVASIAIKRERNSSFQKFQKWLDYYG----PFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQ  636 (874)
Q Consensus       576 ~~~I~~~a~~~~~~~~~~~F~~~l~~~~----pyDiVIDGaNv~~~~~~~f~~~~l~~vv~~l~~  636 (874)
                      ...+.....+|....+...+++.+.-.+    .|..++++     |.+.| .++....+.+.+++
T Consensus       498 ~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~-----y~~~G-~~~~A~~v~~~m~~  556 (697)
T PLN03081        498 AALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNL-----YNSSG-RQAEAAKVVETLKR  556 (697)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHH-----HHhCC-CHHHHHHHHHHHHH
Confidence            6666777777887777777777654332    34444443     33333 34455555555554

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=1.6e-43  Score=440.67  Aligned_cols=418  Identities=13%  Similarity=0.044  Sum_probs=325.1

Q ss_pred             ccchhhhhhhchHHHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 002846          146 KSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG  225 (874)
Q Consensus       146 ~~~~~~~~~l~~~~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd  225 (874)
                      +...+||..+.  .+++.++..+|+++|++|...|      +.||.+||+++|.+|++.|+++.|.+++..|.+.|+.||
T Consensus       251 ~d~~s~n~li~--~~~~~g~~~eAl~lf~~M~~~g------~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d  322 (857)
T PLN03077        251 RDCISWNAMIS--GYFENGECLEGLELFFTMRELS------VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVD  322 (857)
T ss_pred             CCcchhHHHHH--HHHhCCCHHHHHHHHHHHHHcC------CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccc
Confidence            45667888888  8888888888888888886554      456668888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHH
Q 002846          226 QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDS  305 (874)
Q Consensus       226 ~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~  305 (874)
                      ..+||+||.+|+          ++|++++|..+|+       +|..    +|+++||+||.+      |++.|++++|.+
T Consensus       323 ~~~~n~Li~~y~----------k~g~~~~A~~vf~-------~m~~----~d~~s~n~li~~------~~~~g~~~~A~~  375 (857)
T PLN03077        323 VSVCNSLIQMYL----------SLGSWGEAEKVFS-------RMET----KDAVSWTAMISG------YEKNGLPDKALE  375 (857)
T ss_pred             hHHHHHHHHHHH----------hcCCHHHHHHHHh-------hCCC----CCeeeHHHHHHH------HHhCCCHHHHHH
Confidence            888888888888          8999999999995       5643    378899999999      999999999999


Q ss_pred             HHHHHHHcCCCCCeeeec-------------------------------------------cccHHHHHHhhhcC-CCCc
Q 002846          306 TFNEKENLGQFSNGHMKL-------------------------------------------NSQLLDGRSNLERG-PDDQ  341 (874)
Q Consensus       306 lf~eM~~~Gi~Pd~~ty~-------------------------------------------~g~~~eA~~l~~~m-~pd~  341 (874)
                      +|++|...|+.||.+||+                                           .|++++|..+|++| .+|+
T Consensus       376 lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~  455 (857)
T PLN03077        376 TYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDV  455 (857)
T ss_pred             HHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCe
Confidence            999999999999999886                                           57888999999999 8899


Q ss_pred             ccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 002846          342 SRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR  421 (874)
Q Consensus       342 ~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd  421 (874)
                      ++|           |+||.+|++.|+.++|+++|++|.. ++.||..||+++|.+|++.|+++.+.+++..|.+.|+.||
T Consensus       456 vs~-----------~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~  523 (857)
T PLN03077        456 ISW-----------TSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFD  523 (857)
T ss_pred             eeH-----------HHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCcc
Confidence            999           9999999999999999999999985 6899999999999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCChhHHHH-HHH
Q 002846          422 LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAK  500 (874)
Q Consensus       422 ~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~T~~~-I~~  500 (874)
                      ..+||+||.+|+++|++++|+++|++|     .||..+||+||.+|++.|+.++|.++|++|.+.+..|+..||+. |.+
T Consensus       524 ~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a  598 (857)
T PLN03077        524 GFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA  598 (857)
T ss_pred             ceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH
Confidence            999999999999999999999999987     58999999999999999999999999999999844444448888 455


Q ss_pred             HHhcchHHHhhhhhchhHHHHHHHhhcCCcccccc-cCCCCCceeEeecccccccccccCcccc--cc---cCCHHHHHH
Q 002846          501 WFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLG-WLGKGKWIVSHTTVGGDALCKCCGEKLA--II---DLDPIETEK  574 (874)
Q Consensus       501 ~~~s~~~~~a~~~~~d~~~v~ea~~~~G~~~~~m~-~~G~~p~~vt~t~vl~~G~C~~c~~~L~--~i---~l~~ee~~~  574 (874)
                      +++.+.             ++++..    .|+.|. ..|+.|+..+| +.+++++|+++...-+  .+   .+.| +...
T Consensus       599 ~~~~g~-------------v~ea~~----~f~~M~~~~gi~P~~~~y-~~lv~~l~r~G~~~eA~~~~~~m~~~p-d~~~  659 (857)
T PLN03077        599 CSRSGM-------------VTQGLE----YFHSMEEKYSITPNLKHY-ACVVDLLGRAGKLTEAYNFINKMPITP-DPAV  659 (857)
T ss_pred             HhhcCh-------------HHHHHH----HHHHHHHHhCCCCchHHH-HHHHHHHHhCCCHHHHHHHHHHCCCCC-CHHH
Confidence            444443             445555    777887 68999999998 6788888888753221  11   1222 2334


Q ss_pred             HHHHHHHHHHhccchHHHHHHHHHHhhcCCcchhhhhhhhhccccCCCChhhHHHHHHHHHH
Q 002846          575 FAESVASIAIKRERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQ  636 (874)
Q Consensus       575 l~~~I~~~a~~~~~~~~~~~F~~~l~~~~pyDiVIDGaNv~~~~~~~f~~~~l~~vv~~l~~  636 (874)
                      |...+....+++.....-..+++.++ ..|-+.-.--+..-.|.+.| .+..+..|-+.+++
T Consensus       660 ~~aLl~ac~~~~~~e~~e~~a~~l~~-l~p~~~~~y~ll~n~ya~~g-~~~~a~~vr~~M~~  719 (857)
T PLN03077        660 WGALLNACRIHRHVELGELAAQHIFE-LDPNSVGYYILLCNLYADAG-KWDEVARVRKTMRE  719 (857)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHh-hCCCCcchHHHHHHHHHHCC-ChHHHHHHHHHHHH
Confidence            55555555555655433333333333 22222111001111233322 45666666666655

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=3.7e-43  Score=428.08  Aligned_cols=386  Identities=11%  Similarity=-0.009  Sum_probs=294.8

Q ss_pred             cccccccchhhhhhhchHHHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 002846          141 KKIGIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQRE  220 (874)
Q Consensus       141 ~~~~~~~~~~~~~~l~~~~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~  220 (874)
                      +........++|..+.  .+++.++.++|.++|++|          ..||+++||++|.+|++.|++++|+++|++|.+.
T Consensus       151 ~~g~~~~~~~~n~Li~--~y~k~g~~~~A~~lf~~m----------~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~  218 (697)
T PLN03081        151 SSGFEPDQYMMNRVLL--MHVKCGMLIDARRLFDEM----------PERNLASWGTIIGGLVDAGNYREAFALFREMWED  218 (697)
T ss_pred             HhCCCcchHHHHHHHH--HHhcCCCHHHHHHHHhcC----------CCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence            3445567788999987  899999999999999999          2467799999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCC-chhhhHhhhcCcccChhhhhcCC
Q 002846          221 GIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYR  299 (874)
Q Consensus       221 Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~-d~vtyn~LI~~~~~~~~~~~~g~  299 (874)
                      |+.||..||+++|.+|+          +.|..+.+.+++.       .+.+. |+. |..+||+||++      |++.|+
T Consensus       219 g~~p~~~t~~~ll~a~~----------~~~~~~~~~~l~~-------~~~~~-g~~~d~~~~n~Li~~------y~k~g~  274 (697)
T PLN03081        219 GSDAEPRTFVVMLRASA----------GLGSARAGQQLHC-------CVLKT-GVVGDTFVSCALIDM------YSKCGD  274 (697)
T ss_pred             CCCCChhhHHHHHHHHh----------cCCcHHHHHHHHH-------HHHHh-CCCccceeHHHHHHH------HHHCCC
Confidence            99999999999999999          6677777777763       44444 555 66777777777      777777


Q ss_pred             hHHHHHHHHHHHHcCCCCCeeeec--------cccHHHHHHhhhcC-----CCCcccccccccccCCccchHHHHHHhcC
Q 002846          300 FDDLDSTFNEKENLGQFSNGHMKL--------NSQLLDGRSNLERG-----PDDQSRKKDWSIDNQDADEIRLSEDAKKY  366 (874)
Q Consensus       300 ~e~A~~lf~eM~~~Gi~Pd~~ty~--------~g~~~eA~~l~~~m-----~pd~~ty~~w~i~~~~~~n~lI~~~~k~g  366 (874)
                      +++|.++|++|..    +|+++|+        .|+.++|..+|++|     .||.+||           +++|.+|++.|
T Consensus       275 ~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~-----------~~ll~a~~~~g  339 (697)
T PLN03081        275 IEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTF-----------SIMIRIFSRLA  339 (697)
T ss_pred             HHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH-----------HHHHHHHHhcc
Confidence            7777777777753    5777777        67777777777777     6777777           88888888888


Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHH
Q 002846          367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEE  446 (874)
Q Consensus       367 ~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~  446 (874)
                      ++++|.+++++|.+.|+.||..+||+||++|+++|++++|.++|++|.    .||+.+||+||.+|++.|+.++|.++|+
T Consensus       340 ~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~  415 (697)
T PLN03081        340 LLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFE  415 (697)
T ss_pred             chHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHH
Confidence            888888888888888888888888888888888888888888888875    3788888888888888888888888888


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHh-cCCCCChhHHHH-HHHHHhcchHHHhhhhhchhHHHHHHH
Q 002846          447 HMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT-SVRKVSPSTADV-IAKWFNSKEAARLGKKKWNESLIKDTM  524 (874)
Q Consensus       447 eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~-~~~~~sp~T~~~-I~~~~~s~~~~~a~~~~~d~~~v~ea~  524 (874)
                      +|.+.|+.||..||++||.+|++.|.+++|.++|+.|.+ .+..|...+|+. |..+++.+...+|.             
T Consensus       416 ~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~-------------  482 (697)
T PLN03081        416 RMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY-------------  482 (697)
T ss_pred             HHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH-------------
Confidence            888888888888888888888888888888888888875 433344447777 66776666544333             


Q ss_pred             hhcCCcccccccCCCCCceeEeecccccccccccCcccc------cccCCHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Q 002846          525 ENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLA------IIDLDPIETEKFAESVASIAIKRERNSSFQKFQKW  598 (874)
Q Consensus       525 ~~~G~~~~~m~~~G~~p~~vt~t~vl~~G~C~~c~~~L~------~i~l~~ee~~~l~~~I~~~a~~~~~~~~~~~F~~~  598 (874)
                      .    .+..|   +..|+..+| +.++.+.|..+...+.      .+.+.+.....+...+..++..|...++.+.|..|
T Consensus       483 ~----~~~~~---~~~p~~~~~-~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m  554 (697)
T PLN03081        483 A----MIRRA---PFKPTVNMW-AALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETL  554 (697)
T ss_pred             H----HHHHC---CCCCCHHHH-HHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHH
Confidence            2    22222   456777777 5566666665544321      12334433334444445566678888888999998


Q ss_pred             Hhhc
Q 002846          599 LDYY  602 (874)
Q Consensus       599 l~~~  602 (874)
                      .+++
T Consensus       555 ~~~g  558 (697)
T PLN03081        555 KRKG  558 (697)
T ss_pred             HHcC
Confidence            8876

>PF11977 RNase_Zc3h12a: Zc3h12a-like Ribonuclease NYN domain; InterPro: IPR021869 This domain is found in the Zc3h12a protein which has shown to be a ribonuclease that controls the stability of a set of inflammatory genes []

Probab=99.82  E-value=5.6e-21  Score=189.41  Aligned_cols=128  Identities=29%  Similarity=0.422  Sum_probs=95.5

Q ss_pred             chhhhhhhhhccc--cCCCChhhHHHHHHHHHHhCCCCCceEEEeccccccCCCCCChhhHHHHHHHHhcCceEecCCCC
Q 002846          606 EAVVDAANVGLYS--QRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGS  683 (874)
Q Consensus       606 DiVIDGaNv~~~~--~~~f~~~~l~~vv~~l~~~~~~~~~~lvvl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tp~~s  683 (874)
                      -+||||+|||+..  +..|+..+|..+|++|.+   .|..+++|++..+........+.+.+.+++|.+.+.++.||+++
T Consensus         4 ~VVIDG~NVA~~~~~~~~f~~~~i~~~v~~~~~---rG~~~v~v~~~~~~~~~~~~~~~~~~~L~~l~~~~~i~~tp~~~   80 (155)
T PF11977_consen    4 PVVIDGSNVAYSHGNQKFFSVRGIQIAVEYFKS---RGHEVVVVFPPNYRYKKLAKKSDDQEELEKLIRKGIIYFTPSGS   80 (155)
T ss_dssp             -EEEEHHHHHHHHTTTTSEEHHHHHHHHHHHHH---TT---EEEEEEGGGGS-TTS-EESTCHHHHHHHTTSEEEE-EEE
T ss_pred             EEEEeCHHHHhhcCCCCCcCHHHHHHHHHHHHH---cCCCeEEEEcchhhhccccCCCChHHHHHHHHHCCeEEEcCCCC
Confidence            3799999998643  335899999999999999   68878888876653322344677888999999999999999999


Q ss_pred             C--------ccHHHHHHHHhcCceEEeCcccccccccccCCchHHhHhhcCeeEEEecCCCCcc
Q 002846          684 N--------DDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFSFSDAGPEF  739 (874)
Q Consensus       684 ~--------DD~y~LyAa~~~~~~~vsnD~mRdH~~~ll~~~~F~rW~~~hqv~~~~~~~~~~~  739 (874)
                      +        ||||||++|...+|+|||||+||||.+   ....|.+|.++|+|+|+|......+
T Consensus        81 ~~g~~~~~ydD~~il~~A~~~~a~IVSND~frD~~~---~~~~~~~~~~~~~i~~tf~~~~~~~  141 (155)
T PF11977_consen   81 NYGSRSRNYDDRYILYYAEEKDAVIVSNDRFRDHIF---ENPELRRWIERRLIRFTFVGDEFMP  141 (155)
T ss_dssp             ETTEEEEB-HHHHHHHHHHHTT-EEE-S---HHHHH---H-HHHHHHHHHHEE--EEETTEEE-
T ss_pred             CCCCcccccchHHHHHHHHHcCCEEEeCchHHHHhh---cchHHHHHHHHeeeeEEEECCEEEc
Confidence            7        999999999999999999999999999   6678999999999999997544433

It has been suggested that this domain belongs to the PIN domain superfamily []. ; PDB: 3V33_A 3V34_B 3V32_B.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.66  E-value=2.5e-14  Score=162.27  Aligned_cols=285  Identities=14%  Similarity=0.056  Sum_probs=192.9

Q ss_pred             hcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHh
Q 002846          162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG---QYHYNVLLYLCSS  238 (874)
Q Consensus       162 k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd---~~tyn~LL~a~~~  238 (874)
                      ..++.++|...|++|....       +.+..+|..+...+.+.|++++|+.+++.+...+-.++   ...+..|...|. 
T Consensus        47 ~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~-  118 (389)
T PRK11788         47 LNEQPDKAIDLFIEMLKVD-------PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL-  118 (389)
T ss_pred             hcCChHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-
Confidence            5578889999999996532       12446889999999999999999999999987543322   256777788888 


Q ss_pred             cccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCC
Q 002846          239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN  318 (874)
Q Consensus       239 ~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd  318 (874)
                               +.|++++|..+|.       ++.+. ...+..+++.++..      +++.|++++|.++|..|...+-.++
T Consensus       119 ---------~~g~~~~A~~~~~-------~~l~~-~~~~~~~~~~la~~------~~~~g~~~~A~~~~~~~~~~~~~~~  175 (389)
T PRK11788        119 ---------KAGLLDRAEELFL-------QLVDE-GDFAEGALQQLLEI------YQQEKDWQKAIDVAERLEKLGGDSL  175 (389)
T ss_pred             ---------HCCCHHHHHHHHH-------HHHcC-CcchHHHHHHHHHH------HHHhchHHHHHHHHHHHHHhcCCcc
Confidence                     7899999999995       55443 22366779999999      9999999999999999988763332


Q ss_pred             ee----eec--------cccHHHHHHhhhcC---CCCc-ccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002846          319 GH----MKL--------NSQLLDGRSNLERG---PDDQ-SRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDE  382 (874)
Q Consensus       319 ~~----ty~--------~g~~~eA~~l~~~m---~pd~-~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~G  382 (874)
                      ..    .|.        .++.++|...|+++   .|+. ..+           ..+...+.+.|++++|.++|+++...+
T Consensus       176 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-----------~~la~~~~~~g~~~~A~~~~~~~~~~~  244 (389)
T PRK11788        176 RVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRAS-----------ILLGDLALAQGDYAAAIEALERVEEQD  244 (389)
T ss_pred             hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHH-----------HHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence            21    111        46666666666665   3332 233           445566666667777777776666543


Q ss_pred             CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 002846          383 VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEA  462 (874)
Q Consensus       383 v~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~  462 (874)
                      ......+++.|+.+|+..|++++|...++++.+.  .|+...+..+...+.+.|+.++|..+++++.+.  .|+..+++.
T Consensus       245 p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~  320 (389)
T PRK11788        245 PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHR  320 (389)
T ss_pred             hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHH
Confidence            2222345666666677777777777766666654  355555566666666667777777776666654  366666666


Q ss_pred             HHHHHHh---cCCchHHHHHHHHHHhcCCCCCh
Q 002846          463 LLRVSVE---AGKGDRVYYLLHKLRTSVRKVSP  492 (874)
Q Consensus       463 LI~~~~~---~G~~d~A~~ll~~M~~~~~~~sp  492 (874)
                      ++..++.   .|+.+++..+|++|.+....+.|
T Consensus       321 l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p  353 (389)
T PRK11788        321 LLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP  353 (389)
T ss_pred             HHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence            6666554   34666666666666665444444

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.54  E-value=1.3e-12  Score=148.23  Aligned_cols=262  Identities=14%  Similarity=0.042  Sum_probs=204.6

Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCC---
Q 002846          200 MCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD---  276 (874)
Q Consensus       200 a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~---  276 (874)
                      .+...|++++|+..|.+|.+.+ +.+..++..+...+.          ..|++++|..++.       .+.......   
T Consensus        44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~----------~~g~~~~A~~~~~-------~~l~~~~~~~~~  105 (389)
T PRK11788         44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFR----------RRGEVDRAIRIHQ-------NLLSRPDLTREQ  105 (389)
T ss_pred             HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHH----------HcCcHHHHHHHHH-------HHhcCCCCCHHH
Confidence            4567899999999999999763 234567888888888          7899999999995       454432222   


Q ss_pred             chhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeec--------cccHHHHHHhhhcC---CCCcc---
Q 002846          277 NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL--------NSQLLDGRSNLERG---PDDQS---  342 (874)
Q Consensus       277 d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~--------~g~~~eA~~l~~~m---~pd~~---  342 (874)
                      +...|..+...      |.+.|++++|..+|.++.+.. .++..++.        .|++++|...+..+   .|+..   
T Consensus       106 ~~~~~~~La~~------~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  178 (389)
T PRK11788        106 RLLALQELGQD------YLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE  178 (389)
T ss_pred             HHHHHHHHHHH------HHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH
Confidence            12457888888      999999999999999998752 12333343        78999999999988   23221   


Q ss_pred             ---cccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 002846          343 ---RKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN  419 (874)
Q Consensus       343 ---ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~  419 (874)
                         .|           ..+...+.+.|++++|..+|+++.+.. +.+..++..+...+.+.|++++|.++|+++...+-.
T Consensus       179 ~~~~~-----------~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~  246 (389)
T PRK11788        179 IAHFY-----------CELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPE  246 (389)
T ss_pred             HHHHH-----------HHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh
Confidence               12           445567788999999999999998754 334668888999999999999999999999876322


Q ss_pred             CCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCChhHHHH-H
Q 002846          420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-I  498 (874)
Q Consensus       420 Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~T~~~-I  498 (874)
                      ....+++.+..+|++.|+.++|..+++.+.+.  .|+...+..+...+.+.|+.++|..+|.++.+.  .|...++.. +
T Consensus       247 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~  322 (389)
T PRK11788        247 YLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLL  322 (389)
T ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHH
Confidence            22466888999999999999999999999886  478788899999999999999999999998887  555556655 4


Q ss_pred             HHHH
Q 002846          499 AKWF  502 (874)
Q Consensus       499 ~~~~  502 (874)
                      ..++
T Consensus       323 ~~~~  326 (389)
T PRK11788        323 DYHL  326 (389)
T ss_pred             HHhh
Confidence            4444

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.48  E-value=7.4e-11  Score=146.09  Aligned_cols=303  Identities=12%  Similarity=0.027  Sum_probs=220.3

Q ss_pred             HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 002846          159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS  238 (874)
Q Consensus       159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~  238 (874)
                      .....++..+|.+.|+.+.....  +     ....+..++..+.+.|++++|+.+++.+... .+.+..+|+.+..++. 
T Consensus       406 ~~~~~~~~~~A~~~~~~a~~~~~--~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~-  476 (899)
T TIGR02917       406 SKLSQGDPSEAIADLETAAQLDP--E-----LGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYL-  476 (899)
T ss_pred             HHHhCCChHHHHHHHHHHHhhCC--c-----chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHH-
Confidence            34467788889888888854321  1     1245566778888889999999999888753 3456778888888887 


Q ss_pred             cccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCC
Q 002846          239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN  318 (874)
Q Consensus       239 ~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd  318 (874)
                               ..|+.++|...|.       ++... .-.+...+..+...      +...|++++|.+.|+++..... .+
T Consensus       477 ---------~~~~~~~A~~~~~-------~a~~~-~~~~~~~~~~la~~------~~~~g~~~~A~~~~~~~~~~~~-~~  532 (899)
T TIGR02917       477 ---------GKGDLAKAREAFE-------KALSI-EPDFFPAAANLARI------DIQEGNPDDAIQRFEKVLTIDP-KN  532 (899)
T ss_pred             ---------hCCCHHHHHHHHH-------HHHhh-CCCcHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHhCc-Cc
Confidence                     7788888888884       44332 22244556667777      8888888889888888877542 12


Q ss_pred             eeeec--------cccHHHHHHhhhcC---CC-CcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 002846          319 GHMKL--------NSQLLDGRSNLERG---PD-DQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN  386 (874)
Q Consensus       319 ~~ty~--------~g~~~eA~~l~~~m---~p-d~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd  386 (874)
                      ...+.        .|+.++|...+.++   .| +...+           ..+...+.+.|+.++|..+++.+.... +.+
T Consensus       533 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-----------~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~  600 (899)
T TIGR02917       533 LRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPA-----------LALAQYYLGKGQLKKALAILNEAADAA-PDS  600 (899)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHH-----------HHHHHHHHHCCCHHHHHHHHHHHHHcC-CCC
Confidence            22222        77888888888877   33 33444           677888889999999999999987653 557


Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002846          387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV  466 (874)
Q Consensus       387 ~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~  466 (874)
                      ..+|..+..++...|++++|...|+.+.+.. ..+...+..+...|.+.|+.++|..+|+.+.+.. ..+..++..+...
T Consensus       601 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~  678 (899)
T TIGR02917       601 PEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQL  678 (899)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence            7889999999999999999999999887653 2355677888888889999999999999887643 2357788888999


Q ss_pred             HHhcCCchHHHHHHHHHHhcCCCCCh-hHHHH-HHHHHhcchHHHh
Q 002846          467 SVEAGKGDRVYYLLHKLRTSVRKVSP-STADV-IAKWFNSKEAARL  510 (874)
Q Consensus       467 ~~~~G~~d~A~~ll~~M~~~~~~~sp-~T~~~-I~~~~~s~~~~~a  510 (874)
                      +...|++++|..+++.|...  .+.. ..+.. ...++..+...++
T Consensus       679 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A  722 (899)
T TIGR02917       679 LLAAKRTESAKKIAKSLQKQ--HPKAALGFELEGDLYLRQKDYPAA  722 (899)
T ss_pred             HHHcCCHHHHHHHHHHHHhh--CcCChHHHHHHHHHHHHCCCHHHH
Confidence            99999999999999999877  4333 24443 4445555554444

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.44  E-value=8.3e-11  Score=145.68  Aligned_cols=276  Identities=11%  Similarity=-0.014  Sum_probs=168.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhh
Q 002846          192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD  271 (874)
Q Consensus       192 ~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~  271 (874)
                      ..|..+...|.+.|++++|+..|+.+.+.. +.+...+..+..++.          +.|+.++|...+.       .+..
T Consensus       602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~----------~~~~~~~A~~~~~-------~~~~  663 (899)
T TIGR02917       602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYA----------VMKNYAKAITSLK-------RALE  663 (899)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH----------HcCCHHHHHHHHH-------HHHh
Confidence            455555555555555555555555555332 223344444445554          4566666666663       2222


Q ss_pred             cCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeec--------cccHHHHHHhhhcC---CCC
Q 002846          272 SRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL--------NSQLLDGRSNLERG---PDD  340 (874)
Q Consensus       272 ~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~--------~g~~~eA~~l~~~m---~pd  340 (874)
                      . .-.+..+|..+...      ++..|++++|..+++.|...+.. +...+.        .|+..+|...|..+   .|+
T Consensus       664 ~-~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~  735 (899)
T TIGR02917       664 L-KPDNTEAQIGLAQL------LLAAKRTESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS  735 (899)
T ss_pred             c-CCCCHHHHHHHHHH------HHHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC
Confidence            1 11244556666666      66677777777777766665421 222221        56777777777765   455


Q ss_pred             cccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 002846          341 QSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP  420 (874)
Q Consensus       341 ~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~P  420 (874)
                      ..++           ..+...+.+.|+.++|.+.++.+.... +.+..+++.+...|...|+.++|..+|+++.+.. ++
T Consensus       736 ~~~~-----------~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~  802 (899)
T TIGR02917       736 SQNA-----------IKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PD  802 (899)
T ss_pred             chHH-----------HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CC
Confidence            4555           556677777777777777777776643 4466777777777777777777777777777653 34


Q ss_pred             CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC-ChhHHH-HH
Q 002846          421 RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKV-SPSTAD-VI  498 (874)
Q Consensus       421 d~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~-sp~T~~-~I  498 (874)
                      +...++.+...+.+.|+ .+|..+++.+.... .-+...+..+...+...|++++|..+|+++.+.  .+ .+.++. ..
T Consensus       803 ~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~l~  878 (899)
T TIGR02917       803 NAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNI--APEAAAIRYHLA  878 (899)
T ss_pred             CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCChHHHHHHH
Confidence            56667777777777777 66777777776542 123445566677777788888888888888876  33 334443 36


Q ss_pred             HHHHhcchHHHh
Q 002846          499 AKWFNSKEAARL  510 (874)
Q Consensus       499 ~~~~~s~~~~~a  510 (874)
                      ..+++.|...+|
T Consensus       879 ~~~~~~g~~~~A  890 (899)
T TIGR02917       879 LALLATGRKAEA  890 (899)
T ss_pred             HHHHHcCCHHHH
Confidence            666666654444

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF13041 PPR_2: PPR repeat family

Probab=99.27  E-value=8.7e-12  Score=99.41  Aligned_cols=49  Identities=22%  Similarity=0.421  Sum_probs=48.3

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 002846          189 SEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCS  237 (874)
Q Consensus       189 Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~  237 (874)
                      ||+++||++|++|++.|++++|+++|++|.+.|++||.+||++||++||
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~   49 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC   49 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence            8899999999999999999999999999999999999999999999998

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.27  E-value=9.2e-10  Score=120.11  Aligned_cols=220  Identities=16%  Similarity=0.160  Sum_probs=164.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhh
Q 002846          192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD  271 (874)
Q Consensus       192 ~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~  271 (874)
                      .+=|.|+.. ...|.+..+.-+|+.|+..|+..+...--.|+...|-.+        ...+-     |            
T Consensus       117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~N--------s~~~~-----~------------  170 (625)
T KOG4422|consen  117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYN--------SSNVP-----F------------  170 (625)
T ss_pred             cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhc--------CCCCc-----c------------
Confidence            345555544 457899999999999999999988888888877766211        11110     0            


Q ss_pred             cCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCccccccccccc
Q 002846          272 SRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDN  351 (874)
Q Consensus       272 ~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~  351 (874)
                                                    .-.+-|-.|...|- -...+|..|.+.+  .+|+-......||       
T Consensus       171 ------------------------------~E~~~Fv~~~~~~E-~S~~sWK~G~vAd--L~~E~~PKT~et~-------  210 (625)
T KOG4422|consen  171 ------------------------------AEWEEFVGMRNFGE-DSTSSWKSGAVAD--LLFETLPKTDETV-------  210 (625)
T ss_pred             ------------------------------hhHHHHhhcccccc-ccccccccccHHH--HHHhhcCCCchhH-------
Confidence                                          00122233333331 2333444555444  3344445556677       


Q ss_pred             CCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 002846          352 QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV  431 (874)
Q Consensus       352 ~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a  431 (874)
                          .+||.|+||--..++|.+++++-.....+.+..+||.||.+-.-.-    ..+++.+|....+.||+.|||+++.+
T Consensus       211 ----s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL~c  282 (625)
T KOG4422|consen  211 ----SIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALLSC  282 (625)
T ss_pred             ----HHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHHHH
Confidence                9999999999999999999999999988999999999998866433    38899999999999999999999999


Q ss_pred             HHhCCChhH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCch-HHHHHHHHHHh
Q 002846          432 FCNNGDVDK----ACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGD-RVYYLLHKLRT  485 (874)
Q Consensus       432 ~~k~G~~~~----A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d-~A~~ll~~M~~  485 (874)
                      ..+.|+++.    |.+++.+|++-||.|...+|..+|.-+++.++.. .|..++.++..
T Consensus       283 ~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N  341 (625)
T KOG4422|consen  283 AAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQN  341 (625)
T ss_pred             HHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHH
Confidence            999997765    5788999999999999999999999999998874 45555555544

>PF13041 PPR_2: PPR repeat family

Probab=99.23  E-value=1.4e-11  Score=98.17  Aligned_cols=49  Identities=20%  Similarity=0.455  Sum_probs=27.8

Q ss_pred             CCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 002846          420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV  468 (874)
Q Consensus       420 Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~  468 (874)
                      ||+.+||++|++||+.|++++|+++|++|.+.|+.||..||++||++||
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~   49 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC   49 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence            4555555555555555555555555555555555555555555555554

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.08  E-value=1.4e-08  Score=111.04  Aligned_cols=234  Identities=14%  Similarity=0.109  Sum_probs=190.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhh
Q 002846          192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD  271 (874)
Q Consensus       192 ~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~  271 (874)
                      .+|.+||.++||--..++|.++|.+-.....+.+..+||.||.+-+-.              ...+++.       ||..
T Consensus       208 et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~--------------~~K~Lv~-------EMis  266 (625)
T KOG4422|consen  208 ETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS--------------VGKKLVA-------EMIS  266 (625)
T ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh--------------ccHHHHH-------HHHH
Confidence            799999999999999999999999999999999999999999876621              2245553       7776


Q ss_pred             cCCCC-chhhhHhhhcCcccChhhhhcCChHH----HHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccc
Q 002846          272 SRDMD-NNGQLDYGSSPMIDKLESNSSYRFDD----LDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKD  346 (874)
Q Consensus       272 ~~gi~-d~vtyn~LI~~~~~~~~~~~~g~~e~----A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~  346 (874)
                      . .+. |..|+|+++.+      ..+.|+++.    |.+++.||++.|+.|..-+|                        
T Consensus       267 q-km~Pnl~TfNalL~c------~akfg~F~~ar~aalqil~EmKeiGVePsLsSy------------------------  315 (625)
T KOG4422|consen  267 Q-KMTPNLFTFNALLSC------AAKFGKFEDARKAALQILGEMKEIGVEPSLSSY------------------------  315 (625)
T ss_pred             h-hcCCchHhHHHHHHH------HHHhcchHHHHHHHHHHHHHHHHhCCCcchhhH------------------------
Confidence            6 444 89999999999      999998865    57889999999999999999                        


Q ss_pred             cccccCCccchHHHHHHhcCCHHH-HHHHHHHHH----HCCCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 002846          347 WSIDNQDADEIRLSEDAKKYAFQR-GFEIYEKMC----LDEVPM----NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG  417 (874)
Q Consensus       347 w~i~~~~~~n~lI~~~~k~g~~~~-A~~lf~~M~----~~Gv~P----d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~G  417 (874)
                               -.+|.-+++.++..+ |..+..+..    .+-++|    |..-|.+-+..|.+..+.+.|.++..-.+...
T Consensus       316 ---------h~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~  386 (625)
T KOG4422|consen  316 ---------HLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGD  386 (625)
T ss_pred             ---------HHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Confidence                     888888888887633 444443333    333333    55667888999999999999999987765331


Q ss_pred             ----CCCC---cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          418 ----INPR---LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       418 ----i~Pd---~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                          +.|+   ..-|.-+....|....++.-+..|+.|.-+-+-|+..+..-++++..-.|.++-.-+++..|..-
T Consensus       387 N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~  462 (625)
T KOG4422|consen  387 NWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEY  462 (625)
T ss_pred             chhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHh
Confidence                3343   23466788899999999999999999998888899999999999999999999999999988887

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=98.98  E-value=3.2e-09  Score=124.56  Aligned_cols=244  Identities=14%  Similarity=0.076  Sum_probs=170.1

Q ss_pred             HHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCC
Q 002846          171 KVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSG  250 (874)
Q Consensus       171 ~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G  250 (874)
                      .++-.|...|+.|++      +||.++|..||..|+++.|- +|.-|+-..+..+...|++++.+...+          +
T Consensus        11 nfla~~e~~gi~PnR------vtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~A----------n   73 (1088)
T KOG4318|consen   11 NFLALHEISGILPNR------VTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEA----------N   73 (1088)
T ss_pred             hHHHHHHHhcCCCch------hhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhccccc----------c
Confidence            455667667766666      99999999999999999999 999999888888899999999888733          3


Q ss_pred             CHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHH-HHH-------cC--------
Q 002846          251 SGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNE-KEN-------LG--------  314 (874)
Q Consensus       251 ~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~e-M~~-------~G--------  314 (874)
                      +.+.+.                  .+-.-||+.|..+      |...|++.. ++..++ |..       .|        
T Consensus        74 d~Enpk------------------ep~aDtyt~Ll~a------yr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~f  128 (1088)
T KOG4318|consen   74 DAENPK------------------EPLADTYTNLLKA------YRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWF  128 (1088)
T ss_pred             cccCCC------------------CCchhHHHHHHHH------HHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHH
Confidence            322222                  1234579999999      999998755 222222 222       11        


Q ss_pred             ---------CCCCeeeec-----cccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcC-CHHHHHHHHHHHH
Q 002846          315 ---------QFSNGHMKL-----NSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKY-AFQRGFEIYEKMC  379 (874)
Q Consensus       315 ---------i~Pd~~ty~-----~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g-~~~~A~~lf~~M~  379 (874)
                               ..||..+-.     .|.++.++.++..+ |...-+           +...--+-.+- ......++.+ |.
T Consensus       129 l~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~-Pvsa~~-----------~p~~vfLrqnv~~ntpvekLl~-~c  195 (1088)
T KOG4318|consen  129 LMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKV-PVSAWN-----------APFQVFLRQNVVDNTPVEKLLN-MC  195 (1088)
T ss_pred             HhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhC-Cccccc-----------chHHHHHHHhccCCchHHHHHH-HH
Confidence                     222222221     55566666665554 221111           11111111111 1122333333 33


Q ss_pred             HCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH
Q 002846          380 LDEV-PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP  458 (874)
Q Consensus       380 ~~Gv-~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~  458 (874)
                      +.+. .|+..+|.+++++...+|+++.|..++.+|++.|+..+..-|-+||-+   .++..-+..+...|.+.||.|+..
T Consensus       196 ksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~se  272 (1088)
T KOG4318|consen  196 KSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSE  272 (1088)
T ss_pred             HHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcc
Confidence            3333 499999999999999999999999999999999999999989999988   888999999999999999999999


Q ss_pred             HHHHHHHHHHhcCC
Q 002846          459 ELEALLRVSVEAGK  472 (874)
Q Consensus       459 ty~~LI~~~~~~G~  472 (874)
                      |+.--+-.+..+|.
T Consensus       273 T~adyvip~l~N~~  286 (1088)
T KOG4318|consen  273 TQADYVIPQLSNGQ  286 (1088)
T ss_pred             hhHHHHHhhhcchh
Confidence            99877767666554

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.93  E-value=1.1e-06  Score=107.16  Aligned_cols=302  Identities=11%  Similarity=-0.032  Sum_probs=212.6

Q ss_pred             HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 002846          159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG-QYHYNVLLYLCS  237 (874)
Q Consensus       159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd-~~tyn~LL~a~~  237 (874)
                      .....++..+|+.+++.....-..     .|  ..+..+..++...|++++|+..|+++...  .|+ ...+..+-.++.
T Consensus        51 ~~~~~g~~~~A~~l~~~~l~~~p~-----~~--~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~  121 (656)
T PRK15174         51 ACLRKDETDVGLTLLSDRVLTAKN-----GR--DLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLL  121 (656)
T ss_pred             HHHhcCCcchhHHHhHHHHHhCCC-----ch--hHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHH
Confidence            445778999999999988543221     12  34444446666799999999999999864  344 344555555556


Q ss_pred             hcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCC
Q 002846          238 SAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS  317 (874)
Q Consensus       238 ~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~P  317 (874)
                                ..|+.++|...+.       +.... .-.+...|..+...      +...|++++|...+..+....-.+
T Consensus       122 ----------~~g~~~~Ai~~l~-------~Al~l-~P~~~~a~~~la~~------l~~~g~~~eA~~~~~~~~~~~P~~  177 (656)
T PRK15174        122 ----------KSKQYATVADLAE-------QAWLA-FSGNSQIFALHLRT------LVLMDKELQAISLARTQAQEVPPR  177 (656)
T ss_pred             ----------HcCCHHHHHHHHH-------HHHHh-CCCcHHHHHHHHHH------HHHCCChHHHHHHHHHHHHhCCCC
Confidence                      6789999999985       33321 11245567788888      899999999999998886653222


Q ss_pred             Ceeeec------cccHHHHHHhhhcC-C--C--CcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 002846          318 NGHMKL------NSQLLDGRSNLERG-P--D--DQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN  386 (874)
Q Consensus       318 d~~ty~------~g~~~eA~~l~~~m-~--p--d~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd  386 (874)
                      ....+.      .|+..+|...++.+ .  |  +...+           ..+...+.+.|+.++|...|+...... +-+
T Consensus       178 ~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~-----------~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~  245 (656)
T PRK15174        178 GDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESA-----------GLAVDTLCAVGKYQEAIQTGESALARG-LDG  245 (656)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHH-----------HHHHHHHHHCCCHHHHHHHHHHHHhcC-CCC
Confidence            211111      78888998888876 1  1  11222           344567888999999999999988764 346


Q ss_pred             HHHHHHHHHHHHhcCChhH----HHHHHHHHHHCCCCCC-cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHH
Q 002846          387 EASLTAVGRMAMSMGDGDM----AFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPEL  460 (874)
Q Consensus       387 ~~tyn~LI~~~~~~G~~d~----A~~l~~~M~~~Gi~Pd-~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd-~~ty  460 (874)
                      ...+..+-..+...|++++    |...|++....  .|+ ...+..+-..+.+.|+.++|...++......  |+ ...+
T Consensus       246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~--P~~~~a~  321 (656)
T PRK15174        246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH--PDLPYVR  321 (656)
T ss_pred             HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHH
Confidence            7788889999999999986    78899888765  344 5678888888999999999999999988753  54 4556


Q ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhcCCCCChhHHHH--HHHHHhcchHHHhh
Q 002846          461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV--IAKWFNSKEAARLG  511 (874)
Q Consensus       461 ~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~T~~~--I~~~~~s~~~~~a~  511 (874)
                      ..|-..+.+.|++++|...|.++...  .|....+..  ...+...+...+|.
T Consensus       322 ~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~  372 (656)
T PRK15174        322 AMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAE  372 (656)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHH
Confidence            67788889999999999999998876  444322222  23344455544443

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.81  E-value=2e-06  Score=104.82  Aligned_cols=276  Identities=7%  Similarity=-0.048  Sum_probs=206.1

Q ss_pred             HhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc
Q 002846          161 EQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG-QYHYNVLLYLCSSA  239 (874)
Q Consensus       161 ~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd-~~tyn~LL~a~~~~  239 (874)
                      ...++.++|...|+.+....  |+     +...|..+-..+.+.|++++|+..|+++...  .|+ ...+..+..++.  
T Consensus        87 l~~g~~~~A~~~l~~~l~~~--P~-----~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~--  155 (656)
T PRK15174         87 LASSQPDAVLQVVNKLLAVN--VC-----QPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLV--  155 (656)
T ss_pred             hhcCCHHHHHHHHHHHHHhC--CC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHH--
Confidence            35899999999999995431  21     2356777788899999999999999999864  344 566777777887  


Q ss_pred             ccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCe
Q 002846          240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG  319 (874)
Q Consensus       240 ~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~  319 (874)
                              ..|+.++|...+.       .+... .-.+...+..+ ..      +...|++++|..+++.+....-.++.
T Consensus       156 --------~~g~~~eA~~~~~-------~~~~~-~P~~~~a~~~~-~~------l~~~g~~~eA~~~~~~~l~~~~~~~~  212 (656)
T PRK15174        156 --------LMDKELQAISLAR-------TQAQE-VPPRGDMIATC-LS------FLNKSRLPEDHDLARALLPFFALERQ  212 (656)
T ss_pred             --------HCCChHHHHHHHH-------HHHHh-CCCCHHHHHHH-HH------HHHcCCHHHHHHHHHHHHhcCCCcch
Confidence                    7899999999884       33322 11222223222 23      67789999999999998776422222


Q ss_pred             eeec--------cccHHHHHHhhhcC---CCCc-ccccccccccCCccchHHHHHHhcCCHHH----HHHHHHHHHHCCC
Q 002846          320 HMKL--------NSQLLDGRSNLERG---PDDQ-SRKKDWSIDNQDADEIRLSEDAKKYAFQR----GFEIYEKMCLDEV  383 (874)
Q Consensus       320 ~ty~--------~g~~~eA~~l~~~m---~pd~-~ty~~w~i~~~~~~n~lI~~~~k~g~~~~----A~~lf~~M~~~Gv  383 (874)
                      ..+.        .|+.++|...+.+.   .|+. ..+           ..+-..+...|+.++    |...|+...... 
T Consensus       213 ~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~-----------~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-  280 (656)
T PRK15174        213 ESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALR-----------RSLGLAYYQSGRSREAKLQAAEHWRHALQFN-  280 (656)
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHH-----------HHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-
Confidence            2211        68889999998887   4443 333           566778888999886    899999988753 


Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHH-
Q 002846          384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELE-  461 (874)
Q Consensus       384 ~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd-~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~-  461 (874)
                      +-+..++..+...+...|++++|...+++....  .|+ ...+..+-..|.+.|++++|...|+.+....  |+...+. 
T Consensus       281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~  356 (656)
T PRK15174        281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNR  356 (656)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHH
Confidence            335778999999999999999999999998875  455 3456667788999999999999999998754  6654433 


Q ss_pred             HHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          462 ALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       462 ~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      .+..++...|+.++|...|++..+.
T Consensus       357 ~~a~al~~~G~~deA~~~l~~al~~  381 (656)
T PRK15174        357 YAAAALLQAGKTSEAESVFEHYIQA  381 (656)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            3456788999999999999998776

>PF12854 PPR_1: PPR repeat

Probab=98.53  E-value=6.5e-08  Score=70.61  Aligned_cols=31  Identities=16%  Similarity=0.172  Sum_probs=12.1

Q ss_pred             CCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 002846          383 VPMNEASLTAVGRMAMSMGDGDMAFDMVKRM  413 (874)
Q Consensus       383 v~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M  413 (874)
                      +.||.+|||+||++||+.|++++|.++|++|
T Consensus         3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            3333333333333333333333333333333

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=98.53  E-value=3.4e-05  Score=93.65  Aligned_cols=254  Identities=11%  Similarity=0.049  Sum_probs=185.4

Q ss_pred             CChhHHHHHHHHHhhCCCCCCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhccc
Q 002846          164 TNDSGQYKVRGITDEKGSKKSKKDRS-EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG-QYHYNVLLYLCSSAAV  241 (874)
Q Consensus       164 ~~~~~A~~vf~eM~~~g~k~~~g~~P-d~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd-~~tyn~LL~a~~~~~~  241 (874)
                      +..++|.+.|+.....+.     ..| +...|+.+-..+...|++++|+..|++....  .|+ ...|..+-..+.    
T Consensus       308 ~~y~~A~~~~~~al~~~~-----~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~----  376 (615)
T TIGR00990       308 ESYEEAARAFEKALDLGK-----LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNL----  376 (615)
T ss_pred             hhHHHHHHHHHHHHhcCC-----CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHH----
Confidence            467789999998865441     223 3356777777888999999999999998864  454 446666666666    


Q ss_pred             CCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeee
Q 002846          242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHM  321 (874)
Q Consensus       242 ~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~t  321 (874)
                            ..|+.++|...|.       +..+. .-.+...|..+-..      +...|++++|...|++.....  |+...
T Consensus       377 ------~~g~~~eA~~~~~-------~al~~-~p~~~~~~~~lg~~------~~~~g~~~~A~~~~~kal~l~--P~~~~  434 (615)
T TIGR00990       377 ------ELGDPDKAEEDFD-------KALKL-NSEDPDIYYHRAQL------HFIKGEFAQAGKDYQKSIDLD--PDFIF  434 (615)
T ss_pred             ------HCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHcC--ccCHH
Confidence                  6789999999995       33332 22245567777667      888999999999998877652  33211


Q ss_pred             eccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 002846          322 KLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG  401 (874)
Q Consensus       322 y~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G  401 (874)
                                           .|           ..+-..+.+.|++++|+..|++..... +-+...|+.+-..+...|
T Consensus       435 ---------------------~~-----------~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g  481 (615)
T TIGR00990       435 ---------------------SH-----------IQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQN  481 (615)
T ss_pred             ---------------------HH-----------HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcc
Confidence                                 11           445567788999999999999987642 345788999999999999


Q ss_pred             ChhHHHHHHHHHHHCCCCCCc--cc------HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCc
Q 002846          402 DGDMAFDMVKRMKSLGINPRL--RS------YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG  473 (874)
Q Consensus       402 ~~d~A~~l~~~M~~~Gi~Pd~--~t------Yn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~  473 (874)
                      ++++|...|++.....  |+.  ..      ++..+..+-..|++++|.++++...... .-+...+..|...+.+.|++
T Consensus       482 ~~~~A~~~~~~Al~l~--p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~  558 (615)
T TIGR00990       482 KFDEAIEKFDTAIELE--KETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDV  558 (615)
T ss_pred             CHHHHHHHHHHHHhcC--CccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCH
Confidence            9999999999877652  321  11      1222233444699999999999987654 22345688899999999999


Q ss_pred             hHHHHHHHHHHhc
Q 002846          474 DRVYYLLHKLRTS  486 (874)
Q Consensus       474 d~A~~ll~~M~~~  486 (874)
                      ++|..+|++..+.
T Consensus       559 ~eAi~~~e~A~~l  571 (615)
T TIGR00990       559 DEALKLFERAAEL  571 (615)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998765

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=98.53  E-value=4.6e-05  Score=92.50  Aligned_cols=292  Identities=11%  Similarity=0.010  Sum_probs=193.1

Q ss_pred             HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 002846          159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG-QYHYNVLLYLCS  237 (874)
Q Consensus       159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd-~~tyn~LL~a~~  237 (874)
                      .+-+.++.++|.+.|+..+.        ..|+...|..+-.+|.+.|++++|+..+....+.  .|+ ...|..+=.++.
T Consensus       136 ~~~~~~~~~~Ai~~y~~al~--------~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~  205 (615)
T TIGR00990       136 KAYRNKDFNKAIKLYSKAIE--------CKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYD  205 (615)
T ss_pred             HHHHcCCHHHHHHHHHHHHh--------cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHH
Confidence            34577899999999999854        3355578888888999999999999999998864  343 456666666676


Q ss_pred             hcccCCCcccCCCCHHHHHHHHhhcccCc-----------------------hhhhhcCCCCc--hhh--hHhh------
Q 002846          238 SAAVGVVKPAKSGSGMRTLDTFEVSTMNS-----------------------TELGDSRDMDN--NGQ--LDYG------  284 (874)
Q Consensus       238 ~~~~~~~~~~k~G~~~~A~~vf~v~~~~s-----------------------~em~~~~gi~d--~vt--yn~L------  284 (874)
                                ..|++++|..-|.......                       .+..+. ...+  ..+  .+.+      
T Consensus       206 ----------~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~  274 (615)
T TIGR00990       206 ----------GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILET-KPENLPSVTFVGNYLQSFRPK  274 (615)
T ss_pred             ----------HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCHHHHHHHHHHccCC
Confidence                      6788888876542110000                       000000 0000  000  0000      


Q ss_pred             ----------------hcC-cc---cChhhhhcCChHHHHHHHHHHHHcC-CCCCee-eec--------cccHHHHHHhh
Q 002846          285 ----------------SSP-MI---DKLESNSSYRFDDLDSTFNEKENLG-QFSNGH-MKL--------NSQLLDGRSNL  334 (874)
Q Consensus       285 ----------------I~~-~~---~~~~~~~~g~~e~A~~lf~eM~~~G-i~Pd~~-ty~--------~g~~~eA~~l~  334 (874)
                                      ..+ ..   ...+....+.+++|.+.|++....+ ..|+.. .|.        .|+.++|...|
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~  354 (615)
T TIGR00990       275 PRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADL  354 (615)
T ss_pred             cchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence                            000 00   0000112357888999999888765 334321 222        67888888888


Q ss_pred             hcC---CCCc-ccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 002846          335 ERG---PDDQ-SRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMV  410 (874)
Q Consensus       335 ~~m---~pd~-~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~  410 (874)
                      ++.   .|+. ..|           ..+-..+...|++++|...|++..... +-+..+|..+...+...|++++|...|
T Consensus       355 ~kal~l~P~~~~~~-----------~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~  422 (615)
T TIGR00990       355 SKSIELDPRVTQSY-----------IKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDY  422 (615)
T ss_pred             HHHHHcCCCcHHHH-----------HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            876   4543 244           555566778888899999888877653 335678888888888889999999988


Q ss_pred             HHHHHCCCCCC-cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          411 KRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       411 ~~M~~~Gi~Pd-~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      ++..+.  .|+ ...|..+-..+.+.|+.++|...|+...... .-+...|+.+-..+...|++++|...|++....
T Consensus       423 ~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l  496 (615)
T TIGR00990       423 QKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL  496 (615)
T ss_pred             HHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            887765  343 4556666677778889999999888877632 224667788888888888999999888887765

>PF12854 PPR_1: PPR repeat

Probab=98.52  E-value=1e-07  Score=69.55  Aligned_cols=34  Identities=26%  Similarity=0.565  Sum_probs=32.4

Q ss_pred             CCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHH
Q 002846          416 LGINPRLRSYGPALSVFCNNGDVDKACSVEEHML  449 (874)
Q Consensus       416 ~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~  449 (874)
                      +|+.||..|||+||++||+.|++++|.++|++|+
T Consensus         1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            4899999999999999999999999999999994

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=98.49  E-value=1.8e-06  Score=101.99  Aligned_cols=219  Identities=14%  Similarity=0.069  Sum_probs=151.7

Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCC-chhhhHhhhcCccc
Q 002846          212 RLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMID  290 (874)
Q Consensus       212 ~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~-d~vtyn~LI~~~~~  290 (874)
                      .++-.|...|+.||.+||.+||.-||          ..|+++.|- +|.       -|..+ ..+ +-..++.++.+   
T Consensus        11 nfla~~e~~gi~PnRvtyqsLiarYc----------~~gdieaat-if~-------fm~~k-sLpv~e~vf~~lv~s---   68 (1088)
T KOG4318|consen   11 NFLALHEISGILPNRVTYQSLIARYC----------TKGDIEAAT-IFP-------FMEIK-SLPVREGVFRGLVAS---   68 (1088)
T ss_pred             hHHHHHHHhcCCCchhhHHHHHHHHc----------ccCCCcccc-chh-------hhhcc-cccccchhHHHHHhc---
Confidence            46778889999999999999999999          778888777 774       23332 444 66779999999   


Q ss_pred             ChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHH
Q 002846          291 KLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQR  370 (874)
Q Consensus       291 ~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~  370 (874)
                         ....++.+.+.           .|..-||                                 ..|+.+|...|++..
T Consensus        69 ---h~~And~Enpk-----------ep~aDty---------------------------------t~Ll~ayr~hGDli~  101 (1088)
T KOG4318|consen   69 ---HKEANDAENPK-----------EPLADTY---------------------------------TNLLKAYRIHGDLIL  101 (1088)
T ss_pred             ---ccccccccCCC-----------CCchhHH---------------------------------HHHHHHHHhccchHH
Confidence               88888887776           4555555                                 667777777766543


Q ss_pred             HHHHHHH-HHH-------CCC-----------------CCCHHHHHHHHHHHHhcCChhHHHH-----------------
Q 002846          371 GFEIYEK-MCL-------DEV-----------------PMNEASLTAVGRMAMSMGDGDMAFD-----------------  408 (874)
Q Consensus       371 A~~lf~~-M~~-------~Gv-----------------~Pd~~tyn~LI~~~~~~G~~d~A~~-----------------  408 (874)
                       ++..++ |..       .|+                 -||..+   +|....-.|-++.+.+                 
T Consensus       102 -fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglwaqllkll~~~Pvsa~~~p~~vf  177 (1088)
T KOG4318|consen  102 -FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVF  177 (1088)
T ss_pred             -HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHHHHHHHHHhhCCcccccchHHHH
Confidence             222222 111       111                 122211   1222222222222222                 


Q ss_pred             -------------HHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchH
Q 002846          409 -------------MVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDR  475 (874)
Q Consensus       409 -------------l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~  475 (874)
                                   ++...+...-.|+..+|..+++.-..+|+++.|..++.+|.++|+..+..-|-.||-+   .+...-
T Consensus       178 Lrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~  254 (1088)
T KOG4318|consen  178 LRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQV  254 (1088)
T ss_pred             HHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchH
Confidence                         2222222211599999999999999999999999999999999999999988888876   788889


Q ss_pred             HHHHHHHHHhcCCCCChhHHHH-HHHHHhcch
Q 002846          476 VYYLLHKLRTSVRKVSPSTADV-IAKWFNSKE  506 (874)
Q Consensus       476 A~~ll~~M~~~~~~~sp~T~~~-I~~~~~s~~  506 (874)
                      +..++..|+..++.|..+|+.. ++..+.++.
T Consensus       255 ~e~vlrgmqe~gv~p~seT~adyvip~l~N~~  286 (1088)
T KOG4318|consen  255 FEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ  286 (1088)
T ss_pred             HHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence            9999999999966666668766 777777443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.48  E-value=6.2e-07  Score=97.62  Aligned_cols=254  Identities=17%  Similarity=0.121  Sum_probs=103.5

Q ss_pred             HhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 002846          161 EQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVEL-DMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA  239 (874)
Q Consensus       161 ~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI-~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~  239 (874)
                      -+.++.++|+++++.-....      .+|+-..|-.++ ..+-..++.+.|+..|+++...+-. +...|..++.. .  
T Consensus        19 ~~~~~~~~Al~~L~~~~~~~------~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~--   88 (280)
T PF13429_consen   19 YQRGDYEKALEVLKKAAQKI------APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-L--   88 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccc-ccccccccccc-c--
Confidence            36688899999996542211      123324444444 4555678999999999999876533 45566666666 4  


Q ss_pred             ccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCC-CCC
Q 002846          240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQ-FSN  318 (874)
Q Consensus       240 ~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi-~Pd  318 (874)
                              ..++.++|..++.       +.-+.  ..+...+..++..      +-+.++++++.+++++.....- .++
T Consensus        89 --------~~~~~~~A~~~~~-------~~~~~--~~~~~~l~~~l~~------~~~~~~~~~~~~~l~~~~~~~~~~~~  145 (280)
T PF13429_consen   89 --------QDGDPEEALKLAE-------KAYER--DGDPRYLLSALQL------YYRLGDYDEAEELLEKLEELPAAPDS  145 (280)
T ss_dssp             ----------------------------------------------H-------HHHTT-HHHHHHHHHHHHH-T---T-
T ss_pred             --------ccccccccccccc-------ccccc--ccccchhhHHHHH------HHHHhHHHHHHHHHHHHHhccCCCCC
Confidence                    5577888888773       22111  1234446667777      8888999999999998765431 122


Q ss_pred             eeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 002846          319 GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMA  397 (874)
Q Consensus       319 ~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~P-d~~tyn~LI~~~  397 (874)
                      ...|                                 ..+-..+.+.|+.++|.++|++..+..  | |....+.++..+
T Consensus       146 ~~~~---------------------------------~~~a~~~~~~G~~~~A~~~~~~al~~~--P~~~~~~~~l~~~l  190 (280)
T PF13429_consen  146 ARFW---------------------------------LALAEIYEQLGDPDKALRDYRKALELD--PDDPDARNALAWLL  190 (280)
T ss_dssp             HHHH---------------------------------HHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH
T ss_pred             HHHH---------------------------------HHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHH
Confidence            2222                                 555567788999999999999988763  5 577888999999


Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCchHH
Q 002846          398 MSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRV  476 (874)
Q Consensus       398 ~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~P-d~~ty~~LI~~~~~~G~~d~A  476 (874)
                      ...|+.+++.++++...+.. ..|...+..+-.+|...|+.++|...|+......  | |......+-+++...|+.++|
T Consensus       191 i~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~--p~d~~~~~~~a~~l~~~g~~~~A  267 (280)
T PF13429_consen  191 IDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN--PDDPLWLLAYADALEQAGRKDEA  267 (280)
T ss_dssp             CTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHT--------
T ss_pred             HHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc--ccccccccccccccccccccccc
Confidence            99999999999998887663 4556667788888999999999999999987743  5 677778888999999999999


Q ss_pred             HHHHHHHHh
Q 002846          477 YYLLHKLRT  485 (874)
Q Consensus       477 ~~ll~~M~~  485 (874)
                      .++..+.-.
T Consensus       268 ~~~~~~~~~  276 (280)
T PF13429_consen  268 LRLRRQALR  276 (280)
T ss_dssp             ---------
T ss_pred             ccccccccc
Confidence            998876543

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.43  E-value=7.9e-05  Score=85.61  Aligned_cols=121  Identities=7%  Similarity=-0.002  Sum_probs=84.8

Q ss_pred             cCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH--HHHHhcc
Q 002846          163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLL--YLCSSAA  240 (874)
Q Consensus       163 ~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL--~a~~~~~  240 (874)
                      .|+...|.+....-...      ...|. ..|-..-.+..+.|+.+.|...|.++.+  ..|+...+..++  ..+.   
T Consensus        97 eGd~~~A~k~l~~~~~~------~~~p~-l~~llaA~aA~~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l---  164 (398)
T PRK10747         97 EGDYQQVEKLMTRNADH------AEQPV-VNYLLAAEAAQQRGDEARANQHLERAAE--LADNDQLPVEITRVRIQL---  164 (398)
T ss_pred             CCCHHHHHHHHHHHHhc------ccchH-HHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHH---
Confidence            48888999888765221      11222 3343334455789999999999999975  356655444222  2334   


Q ss_pred             cCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCC
Q 002846          241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQF  316 (874)
Q Consensus       241 ~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~  316 (874)
                             ..|+.+.|...++       +..+. .-.+...+..+...      |.+.|++++|.+++..+.+.+..
T Consensus       165 -------~~g~~~~Al~~l~-------~~~~~-~P~~~~al~ll~~~------~~~~gdw~~a~~~l~~l~k~~~~  219 (398)
T PRK10747        165 -------ARNENHAARHGVD-------KLLEV-APRHPEVLRLAEQA------YIRTGAWSSLLDILPSMAKAHVG  219 (398)
T ss_pred             -------HCCCHHHHHHHHH-------HHHhc-CCCCHHHHHHHHHH------HHHHHhHHHHHHHHHHHHHcCCC
Confidence                   6799999999995       44443 32255667888888      99999999999999999998755

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.42  E-value=0.00014  Score=90.58  Aligned_cols=282  Identities=7%  Similarity=-0.023  Sum_probs=184.6

Q ss_pred             HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 002846          159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS  238 (874)
Q Consensus       159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~  238 (874)
                      .....++..+|..+++.....       .+.+...+..+...+...|+.++|+..+++..+.  .|+...+..+-.++. 
T Consensus        58 ~~~~~g~~~~A~~~~~~al~~-------~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~-  127 (765)
T PRK10049         58 AYRNLKQWQNSLTLWQKALSL-------EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG--APDKANLLALAYVYK-  127 (765)
T ss_pred             HHHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH-
Confidence            455778888999999987442       1123355677778888999999999999998865  333322666655666 


Q ss_pred             cccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCC
Q 002846          239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN  318 (874)
Q Consensus       239 ~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd  318 (874)
                               ..|+.++|+..+.       +..+. .-.+...+..+...      +...+..+.|++.++....   .|+
T Consensus       128 ---------~~g~~~~Al~~l~-------~al~~-~P~~~~~~~~la~~------l~~~~~~e~Al~~l~~~~~---~p~  181 (765)
T PRK10049        128 ---------RAGRHWDELRAMT-------QALPR-APQTQQYPTEYVQA------LRNNRLSAPALGAIDDANL---TPA  181 (765)
T ss_pred             ---------HCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHCCChHHHHHHHHhCCC---CHH
Confidence                     6788999999985       34332 22233344445555      6677888888877764432   222


Q ss_pred             ee--------------ee----c-cccH---HHHHHhhhcC------CCCcc-cccccccccCCccchHHHHHHhcCCHH
Q 002846          319 GH--------------MK----L-NSQL---LDGRSNLERG------PDDQS-RKKDWSIDNQDADEIRLSEDAKKYAFQ  369 (874)
Q Consensus       319 ~~--------------ty----~-~g~~---~eA~~l~~~m------~pd~~-ty~~w~i~~~~~~n~lI~~~~k~g~~~  369 (874)
                      ..              .+    . .++.   ++|+..++.+      .|+.. .+--+       ....+..+...|+++
T Consensus       182 ~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a-------~~d~l~~Ll~~g~~~  254 (765)
T PRK10049        182 EKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRA-------RIDRLGALLARDRYK  254 (765)
T ss_pred             HHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHH-------HHHHHHHHHHhhhHH
Confidence            10              00    0 1223   5566666655      12211 11000       000133456779999


Q ss_pred             HHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-----cccHHHHHHHHHhCCChhHHHH
Q 002846          370 RGFEIYEKMCLDEVP-MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-----LRSYGPALSVFCNNGDVDKACS  443 (874)
Q Consensus       370 ~A~~lf~~M~~~Gv~-Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd-----~~tYn~LI~a~~k~G~~~~A~~  443 (874)
                      +|...|+.+...+-. |+..- -.+...|...|++++|..+|+++....  |.     ...+..|..++...|+.++|.+
T Consensus       255 eA~~~~~~ll~~~~~~P~~a~-~~la~~yl~~g~~e~A~~~l~~~l~~~--p~~~~~~~~~~~~L~~a~~~~g~~~eA~~  331 (765)
T PRK10049        255 DVISEYQRLKAEGQIIPPWAQ-RWVASAYLKLHQPEKAQSILTELFYHP--ETIADLSDEELADLFYSLLESENYPGALT  331 (765)
T ss_pred             HHHHHHHHhhccCCCCCHHHH-HHHHHHHHhcCCcHHHHHHHHHHhhcC--CCCCCCChHHHHHHHHHHHhcccHHHHHH
Confidence            999999999988632 44322 225778999999999999999987642  32     2345556778899999999999


Q ss_pred             HHHHHHHcC-----------CCCCH---HHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          444 VEEHMLEHG-----------VYPEE---PELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       444 l~~eM~~~G-----------v~Pd~---~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      +++.+....           -.|+.   ..+..+...+...|+.++|..+|+++...
T Consensus       332 ~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~  388 (765)
T PRK10049        332 VTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN  388 (765)
T ss_pred             HHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            999998752           12332   24456677788999999999999999876

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.40  E-value=0.00014  Score=94.45  Aligned_cols=296  Identities=10%  Similarity=-0.021  Sum_probs=192.6

Q ss_pred             HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 002846          159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS  238 (874)
Q Consensus       159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~  238 (874)
                      ...+.++.++|...|++.....  |     .+...+..+-..+...|++++|++.|+++.+.. +.+...+..+...+..
T Consensus       360 ~~~~~g~~~eA~~~~~~Al~~~--P-----~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~  431 (1157)
T PRK11447        360 AALKANNLAQAERLYQQARQVD--N-----TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQ  431 (1157)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC--C-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence            3457789999999999986531  1     234667778889999999999999999998642 1223344434333321


Q ss_pred             cccC--------------------------------CCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhc
Q 002846          239 AAVG--------------------------------VVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSS  286 (874)
Q Consensus       239 ~~~~--------------------------------~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~  286 (874)
                      ....                                +..+...|+.++|...|.       +.... .-.+...+..+-.
T Consensus       432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~-------~Al~~-~P~~~~~~~~LA~  503 (1157)
T PRK11447        432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQR-------QRLAL-DPGSVWLTYRLAQ  503 (1157)
T ss_pred             cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHH
Confidence            0000                                000114577777777774       33221 1223444555556


Q ss_pred             CcccChhhhhcCChHHHHHHHHHHHHcCCCCCee--eec-------cccHHHHHHhhhcCCCCccccccccccc---CCc
Q 002846          287 PMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH--MKL-------NSQLLDGRSNLERGPDDQSRKKDWSIDN---QDA  354 (874)
Q Consensus       287 ~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~--ty~-------~g~~~eA~~l~~~m~pd~~ty~~w~i~~---~~~  354 (874)
                      .      |.+.|++++|..+|++....  .|+..  .|.       .++..+|...++.+.+...+-..=.+..   ...
T Consensus       504 ~------~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~  575 (1157)
T PRK11447        504 D------LRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQ  575 (1157)
T ss_pred             H------HHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhH
Confidence            6      88888999999988887764  24322  111       5777788888777622110000000000   000


Q ss_pred             cchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 002846          355 DEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN  434 (874)
Q Consensus       355 ~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k  434 (874)
                      .-.+...+...|+.++|..+++.     .+.+...+..|...+.+.|+.++|...|++..+.. +.+...+..+...|..
T Consensus       576 ~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~  649 (1157)
T PRK11447        576 VLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIA  649 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence            01234567788999999998872     24456677888899999999999999999888762 2346677788889999


Q ss_pred             CCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          435 NGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       435 ~G~~~~A~~l~~eM~~~Gv~Pd-~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      .|+.++|.++++...+.  .|+ ...+..+-.++...|+.++|..+++++...
T Consensus       650 ~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~  700 (1157)
T PRK11447        650 QGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ  700 (1157)
T ss_pred             CCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence            99999999999987653  343 445566777788899999999999998775

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.36  E-value=0.00012  Score=95.12  Aligned_cols=247  Identities=12%  Similarity=0.064  Sum_probs=175.3

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCc
Q 002846          199 DMCSKRGDVMGAIRLYDKAQREGIKLG-QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDN  277 (874)
Q Consensus       199 ~a~~k~G~~~~Al~lf~~M~~~Gi~pd-~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d  277 (874)
                      ..+...|++++|++.|++..+.  .|+ ...+..+-..|.          +.|+.++|...+.       +.... .-.+
T Consensus       469 ~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~----------~~G~~~~A~~~l~-------~al~~-~P~~  528 (1157)
T PRK11447        469 EALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLR----------QAGQRSQADALMR-------RLAQQ-KPND  528 (1157)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH----------HcCCHHHHHHHHH-------HHHHc-CCCC
Confidence            3455789999999999998864  343 455566666677          7899999999995       44332 1112


Q ss_pred             hhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeee----------------ec-cccHHHHHHhhhcCCCC
Q 002846          278 NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHM----------------KL-NSQLLDGRSNLERGPDD  340 (874)
Q Consensus       278 ~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~t----------------y~-~g~~~eA~~l~~~m~pd  340 (874)
                      ...+-.+.-.      +...++.++|...++.+......++...                +. .|+.++|..+++.-.++
T Consensus       529 ~~~~~a~al~------l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~  602 (1157)
T PRK11447        529 PEQVYAYGLY------LSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPS  602 (1157)
T ss_pred             HHHHHHHHHH------HHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence            2222222122      5567889999988887543322222111                11 67888899888854444


Q ss_pred             cccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 002846          341 QSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP  420 (874)
Q Consensus       341 ~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~P  420 (874)
                      ...+           ..+-..+.+.|+.++|.+.|++..... +-+...+..+...+...|+.++|.+.++...+.  .|
T Consensus       603 ~~~~-----------~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p  668 (1157)
T PRK11447        603 TRID-----------LTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--AN  668 (1157)
T ss_pred             chHH-----------HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CC
Confidence            4444           567788889999999999999988764 346889999999999999999999999987654  44


Q ss_pred             C-cccHHHHHHHHHhCCChhHHHHHHHHHHHcCC--CC---CHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 002846          421 R-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGV--YP---EEPELEALLRVSVEAGKGDRVYYLLHKLRT  485 (874)
Q Consensus       421 d-~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv--~P---d~~ty~~LI~~~~~~G~~d~A~~ll~~M~~  485 (874)
                      + ...+..+-..+...|+.++|.++++.+....-  .|   +...+..+-..+...|+.++|..+++....
T Consensus       669 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~  739 (1157)
T PRK11447        669 DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV  739 (1157)
T ss_pred             CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            4 34455566778899999999999999886532  12   224555566778899999999999988754

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.34  E-value=0.0001  Score=75.59  Aligned_cols=200  Identities=17%  Similarity=0.087  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhh
Q 002846          191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG  270 (874)
Q Consensus       191 ~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~  270 (874)
                      ...+..+...+...|++++|+..|+++.+.. +-+...+..+-..+.          ..|+.++|...+.       +..
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~----------~~~~~~~A~~~~~-------~al   92 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQ----------QLGELEKAEDSFR-------RAL   92 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH----------HcCCHHHHHHHHH-------HHH
Confidence            3567777788889999999999999887543 223445555555555          5566677766663       111


Q ss_pred             hcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccc
Q 002846          271 DSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID  350 (874)
Q Consensus       271 ~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~  350 (874)
                      .. .-.+...+..                                                                   
T Consensus        93 ~~-~~~~~~~~~~-------------------------------------------------------------------  104 (234)
T TIGR02521        93 TL-NPNNGDVLNN-------------------------------------------------------------------  104 (234)
T ss_pred             hh-CCCCHHHHHH-------------------------------------------------------------------
Confidence            11 1111122222                                                                   


Q ss_pred             cCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHH
Q 002846          351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVP-MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL  429 (874)
Q Consensus       351 ~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~-Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI  429 (874)
                             +...+...|++++|.+.|+........ .....+..+...+...|++++|...+.+..... ..+...+..+.
T Consensus       105 -------~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la  176 (234)
T TIGR02521       105 -------YGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELA  176 (234)
T ss_pred             -------HHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHH
Confidence                   333344455555555555555443211 123344555556666666666666666655432 11234455555


Q ss_pred             HHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 002846          430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT  485 (874)
Q Consensus       430 ~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~  485 (874)
                      ..+...|+.++|...+++.... ...+...+..+...+...|+.++|..+.+.+..
T Consensus       177 ~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       177 ELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            6666666666666666666554 233445555555666666666666666665544

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.31  E-value=9.7e-05  Score=75.79  Aligned_cols=178  Identities=12%  Similarity=0.037  Sum_probs=133.2

Q ss_pred             hhhcCChHHHHHHHHHHHHcCCCCCe-eeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHH
Q 002846          294 SNSSYRFDDLDSTFNEKENLGQFSNG-HMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGF  372 (874)
Q Consensus       294 ~~~~g~~e~A~~lf~eM~~~Gi~Pd~-~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~  372 (874)
                      +...|++++|...|++.....  |+. ..+                                 ..+...+...|++++|.
T Consensus        41 ~~~~~~~~~A~~~~~~~l~~~--p~~~~~~---------------------------------~~la~~~~~~~~~~~A~   85 (234)
T TIGR02521        41 YLEQGDLEVAKENLDKALEHD--PDDYLAY---------------------------------LALALYYQQLGELEKAE   85 (234)
T ss_pred             HHHCCCHHHHHHHHHHHHHhC--cccHHHH---------------------------------HHHHHHHHHcCCHHHHH
Confidence            778899999999999887653  432 222                                 55667788899999999


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CcccHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 002846          373 EIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEH  451 (874)
Q Consensus       373 ~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~P-d~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~  451 (874)
                      +.|++..... +.+...+..+...+...|++++|...+++.......| ....+..+-..+...|+.++|...+++....
T Consensus        86 ~~~~~al~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  164 (234)
T TIGR02521        86 DSFRRALTLN-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI  164 (234)
T ss_pred             HHHHHHHhhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            9999888764 3456788889999999999999999999988753222 3345666777888999999999999998875


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCChhHHHH-HHHHHhcchHHH
Q 002846          452 GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWFNSKEAAR  509 (874)
Q Consensus       452 Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~T~~~-I~~~~~s~~~~~  509 (874)
                      . ..+...+..+...+...|+.++|..++++.... ....+..+.. ..-+...+...+
T Consensus       165 ~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  221 (234)
T TIGR02521       165 D-PQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAA  221 (234)
T ss_pred             C-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHH
Confidence            3 224567888889999999999999999998876 2223344333 333334444333

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR00540 hemY_coli hemY protein

Probab=98.28  E-value=0.00021  Score=82.38  Aligned_cols=123  Identities=12%  Similarity=0.059  Sum_probs=85.4

Q ss_pred             HHhcCChhHHHHHHHHHhhCCCCCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHH
Q 002846          160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSE-QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQY--HYNVLLYLC  236 (874)
Q Consensus       160 ~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd-~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~--tyn~LL~a~  236 (874)
                      ....|+...|.+.+......        .|+ ...|-..-.+..+.|+.+.|...|.++.+.-  |+..  ..-..-..+
T Consensus        94 a~~~g~~~~A~~~l~~~~~~--------~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~  163 (409)
T TIGR00540        94 KLAEGDYAKAEKLIAKNADH--------AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRIL  163 (409)
T ss_pred             HHhCCCHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHH
Confidence            34568899999999876321        233 1333344466778899999999999987543  4432  222223344


Q ss_pred             HhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCC
Q 002846          237 SSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQF  316 (874)
Q Consensus       237 ~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~  316 (874)
                      .          ..|+.+.|...+.       ++.+. .-.+...+-.+...      +...|++++|.+++..+.+.++.
T Consensus       164 l----------~~~~~~~Al~~l~-------~l~~~-~P~~~~~l~ll~~~------~~~~~d~~~a~~~l~~l~k~~~~  219 (409)
T TIGR00540       164 L----------AQNELHAARHGVD-------KLLEM-APRHKEVLKLAEEA------YIRSGAWQALDDIIDNMAKAGLF  219 (409)
T ss_pred             H----------HCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHHhhHHHHHHHHHHHHHcCCC
Confidence            4          5689999999995       55554 33355556777777      99999999999999999998754

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.23  E-value=5.5e-06  Score=90.16  Aligned_cols=228  Identities=16%  Similarity=0.110  Sum_probs=101.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCC
Q 002846          197 ELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD  276 (874)
Q Consensus       197 LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~  276 (874)
                      +=..+.+.|++++|++++++-....-.|+...|-.++..++.         ..++.+.|...+.       .+... +-.
T Consensus        14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~---------~~~~~~~A~~ay~-------~l~~~-~~~   76 (280)
T PF13429_consen   14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAW---------SLGDYDEAIEAYE-------KLLAS-DKA   76 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccc---------ccccccccccccc-------ccccc-ccc
Confidence            355677899999999999776554435666666665555542         4577888888884       33332 111


Q ss_pred             chhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccc
Q 002846          277 NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADE  356 (874)
Q Consensus       277 d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n  356 (874)
                      +...|..++.       +...+++++|.+++.+.-++.  ++...+                                 .
T Consensus        77 ~~~~~~~l~~-------l~~~~~~~~A~~~~~~~~~~~--~~~~~l---------------------------------~  114 (280)
T PF13429_consen   77 NPQDYERLIQ-------LLQDGDPEEALKLAEKAYERD--GDPRYL---------------------------------L  114 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccc-------ccccccccccccccccccccc--cccchh---------------------------------h
Confidence            2222333332       236678888887776654432  222222                                 6


Q ss_pred             hHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHh
Q 002846          357 IRLSEDAKKYAFQRGFEIYEKMCLD-EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCN  434 (874)
Q Consensus       357 ~lI~~~~k~g~~~~A~~lf~~M~~~-Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd-~~tYn~LI~a~~k  434 (874)
                      .++..+.+.++.+++.++++..... ....+...|..+...+.+.|+.++|..++++..+.  .|+ ....+.++..+..
T Consensus       115 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~  192 (280)
T PF13429_consen  115 SALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLID  192 (280)
T ss_dssp             ---H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCT
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence            6777888999999999999998754 34568889999999999999999999999998876  465 6678889999999


Q ss_pred             CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          435 NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       435 ~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      .|+.+++.+++....... ..|...+..+-.+|...|+.++|..+|.+....
T Consensus       193 ~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~  243 (280)
T PF13429_consen  193 MGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL  243 (280)
T ss_dssp             TCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc
Confidence            999999999998887754 455567788999999999999999999998886

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.17  E-value=0.00044  Score=74.51  Aligned_cols=293  Identities=14%  Similarity=0.115  Sum_probs=163.2

Q ss_pred             cccccchhhhhhhchHHHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHcC
Q 002846          143 IGIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLR-VELDMCSKRGDVMGAIRLYDKAQREG  221 (874)
Q Consensus       143 ~~~~~~~~~~~~l~~~~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn-~LI~a~~k~G~~~~Al~lf~~M~~~G  221 (874)
                      +...-++.+|-.++       ...++|.++|-+|..        ..|..+--+ +|=+.|-+.|.+++|+++...+.++ 
T Consensus        35 lsr~Yv~GlNfLLs-------~Q~dKAvdlF~e~l~--------~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-   98 (389)
T COG2956          35 LSRDYVKGLNFLLS-------NQPDKAVDLFLEMLQ--------EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-   98 (389)
T ss_pred             ccHHHHhHHHHHhh-------cCcchHHHHHHHHHh--------cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-
Confidence            34445666777776       567899999999954        123323333 3445677889999999999998854 


Q ss_pred             CCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChH
Q 002846          222 IKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFD  301 (874)
Q Consensus       222 i~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e  301 (874)
                        || .|++-=+.+.-..+   ..|-..|-+++|.++|.       .+++. +..-.-.---|+.-      |-....|+
T Consensus        99 --pd-lT~~qr~lAl~qL~---~Dym~aGl~DRAE~~f~-------~L~de-~efa~~AlqqLl~I------YQ~treW~  158 (389)
T COG2956          99 --PD-LTFEQRLLALQQLG---RDYMAAGLLDRAEDIFN-------QLVDE-GEFAEGALQQLLNI------YQATREWE  158 (389)
T ss_pred             --CC-CchHHHHHHHHHHH---HHHHHhhhhhHHHHHHH-------HHhcc-hhhhHHHHHHHHHH------HHHhhHHH
Confidence              33 23333332222111   23457899999999995       44442 11111123334445      88888999


Q ss_pred             HHHHHHHHHHHcCCCCCeeeec------------cccHHHHHHhhhcC---CCCcccccccccccCCccchHH-HHHHhc
Q 002846          302 DLDSTFNEKENLGQFSNGHMKL------------NSQLLDGRSNLERG---PDDQSRKKDWSIDNQDADEIRL-SEDAKK  365 (874)
Q Consensus       302 ~A~~lf~eM~~~Gi~Pd~~ty~------------~g~~~eA~~l~~~m---~pd~~ty~~w~i~~~~~~n~lI-~~~~k~  365 (874)
                      +|.++-+++...|-.+..+-..            ..+.+.|..++.+.   .|+.+--           ++++ .-....
T Consensus       159 KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRA-----------si~lG~v~~~~  227 (389)
T COG2956         159 KAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRA-----------SIILGRVELAK  227 (389)
T ss_pred             HHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceeh-----------hhhhhHHHHhc
Confidence            9999999888876444333222            44555566665554   3433332           3333 334456


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHH
Q 002846          366 YAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVE  445 (874)
Q Consensus       366 g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~  445 (874)
                      |+...|.+.++...+.+..--.-+...|..+|.+.|++++....+..+.+....++.  -..+-.--....-.+.|...+
T Consensus       228 g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~--~l~l~~lie~~~G~~~Aq~~l  305 (389)
T COG2956         228 GDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA--ELMLADLIELQEGIDAAQAYL  305 (389)
T ss_pred             cchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH--HHHHHHHHHHhhChHHHHHHH
Confidence            667777777766666554433445666666677777777766666666554322221  111111111122233444443


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHhc
Q 002846          446 EHMLEHGVYPEEPELEALLRVSVE---AGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       446 ~eM~~~Gv~Pd~~ty~~LI~~~~~---~G~~d~A~~ll~~M~~~  486 (874)
                      .+-..+  .|+..-+..||+.-..   .|...+-..+++.|...
T Consensus       306 ~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge  347 (389)
T COG2956         306 TRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE  347 (389)
T ss_pred             HHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence            333332  3666666666665432   23334444455555443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.16  E-value=0.0013  Score=82.01  Aligned_cols=296  Identities=9%  Similarity=-0.050  Sum_probs=195.9

Q ss_pred             HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHH
Q 002846          159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ-YHYNVLLYLCS  237 (874)
Q Consensus       159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~-~tyn~LL~a~~  237 (874)
                      .+.+.++.++|...+++....  .|     .+.. +..+-..+...|+.++|+..|+++.+.  .|+. ..+..+..++.
T Consensus        92 ~l~~~g~~~eA~~~l~~~l~~--~P-----~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~  161 (765)
T PRK10049         92 TLADAGQYDEALVKAKQLVSG--AP-----DKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALR  161 (765)
T ss_pred             HHHHCCCHHHHHHHHHHHHHh--CC-----CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence            345789999999999998543  11     2334 777888899999999999999999875  3443 33334444443


Q ss_pred             hcccCCCcccCCCCHHHHHHHHhhcccC---------------------------------------chhhhhcC-CCC-
Q 002846          238 SAAVGVVKPAKSGSGMRTLDTFEVSTMN---------------------------------------STELGDSR-DMD-  276 (874)
Q Consensus       238 ~~~~~~~~~~k~G~~~~A~~vf~v~~~~---------------------------------------s~em~~~~-gi~-  276 (874)
                                ..|..+.|+..+......                                       -+.+.... .-+ 
T Consensus       162 ----------~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~  231 (765)
T PRK10049        162 ----------NNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPD  231 (765)
T ss_pred             ----------HCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCc
Confidence                      233333333333200000                                       01122110 001 


Q ss_pred             chhhh----HhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCC-CCee------eec-cccHHHHHHhhhcC---CCCc
Q 002846          277 NNGQL----DYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQF-SNGH------MKL-NSQLLDGRSNLERG---PDDQ  341 (874)
Q Consensus       277 d~vty----n~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~-Pd~~------ty~-~g~~~eA~~l~~~m---~pd~  341 (874)
                      +...+    ...+..      +...|++++|...|+.+...+-. |+..      .|. .++.++|...|++.   .|..
T Consensus       232 ~~~~~~~a~~d~l~~------Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~  305 (765)
T PRK10049        232 ATADYQRARIDRLGA------LLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETI  305 (765)
T ss_pred             cchHHHHHHHHHHHH------HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCC
Confidence            00010    000222      45678999999999999988632 4321      111 89999999999887   3322


Q ss_pred             c-cccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCC-----------CCCC---HHHHHHHHHHHHhcCChhHH
Q 002846          342 S-RKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDE-----------VPMN---EASLTAVGRMAMSMGDGDMA  406 (874)
Q Consensus       342 ~-ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~G-----------v~Pd---~~tyn~LI~~~~~~G~~d~A  406 (874)
                      . ..       ......+..++...|++++|.++++.+....           -.|+   ...+..+...+...|+.++|
T Consensus       306 ~~~~-------~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA  378 (765)
T PRK10049        306 ADLS-------DEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQA  378 (765)
T ss_pred             CCCC-------hHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHH
Confidence            0 00       0001445557889999999999999998753           1234   23566788889999999999


Q ss_pred             HHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 002846          407 FDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLRT  485 (874)
Q Consensus       407 ~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd-~~ty~~LI~~~~~~G~~d~A~~ll~~M~~  485 (874)
                      .++++++... .+-+...+..+...+...|+.++|.++++...+..  |+ ...+-.+...+.+.|++++|..+++++.+
T Consensus       379 ~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~  455 (765)
T PRK10049        379 EMRARELAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLTDDVVA  455 (765)
T ss_pred             HHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            9999998765 33345677778888889999999999999988744  76 45556666678899999999999999998


Q ss_pred             cCCCCCh
Q 002846          486 SVRKVSP  492 (874)
Q Consensus       486 ~~~~~sp  492 (874)
                      .  .|..
T Consensus       456 ~--~Pd~  460 (765)
T PRK10049        456 R--EPQD  460 (765)
T ss_pred             h--CCCC
Confidence            7  5444

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.10  E-value=0.0015  Score=81.08  Aligned_cols=281  Identities=10%  Similarity=-0.042  Sum_probs=178.4

Q ss_pred             HHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 002846          160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA  239 (874)
Q Consensus       160 ~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~  239 (874)
                      ....++.++|.++|+++.+..  |     -+...+..++..+...++.++|++.++++...  .|+...|-.++..+.  
T Consensus       112 y~~~gdyd~Aiely~kaL~~d--P-----~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~--  180 (822)
T PRK14574        112 YRNEKRWDQALALWQSSLKKD--P-----TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNR--  180 (822)
T ss_pred             HHHcCCHHHHHHHHHHHHhhC--C-----CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHH--
Confidence            335577888888888885432  1     12244557777888888888888888887654  455555544433333  


Q ss_pred             ccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCe
Q 002846          240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG  319 (874)
Q Consensus       240 ~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~  319 (874)
                              ..++..+|+..+.       ++.+. .-.+.-.+.-++.+      +.+.|-...|.++..+      .|+.
T Consensus       181 --------~~~~~~~AL~~~e-------kll~~-~P~n~e~~~~~~~~------l~~~~~~~~a~~l~~~------~p~~  232 (822)
T PRK14574        181 --------ATDRNYDALQASS-------EAVRL-APTSEEVLKNHLEI------LQRNRIVEPALRLAKE------NPNL  232 (822)
T ss_pred             --------hcchHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHcCCcHHHHHHHHh------Cccc
Confidence                    2344444777763       55543 22233333344444      5555666666554443      1222


Q ss_pred             eeec------------------------cc---cHHHHHHhhhcC------CCCc-ccccccccccCCccchHHHHHHhc
Q 002846          320 HMKL------------------------NS---QLLDGRSNLERG------PDDQ-SRKKDWSIDNQDADEIRLSEDAKK  365 (874)
Q Consensus       320 ~ty~------------------------~g---~~~eA~~l~~~m------~pd~-~ty~~w~i~~~~~~n~lI~~~~k~  365 (874)
                      ++-.                        ..   -++.|+.-++.+      .|.. ..|.-+.       -=.|-++.+.
T Consensus       233 f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~-------~Drl~aL~~r  305 (822)
T PRK14574        233 VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRAR-------IDRLGALLVR  305 (822)
T ss_pred             cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHH-------HHHHHHHHHh
Confidence            2111                        11   223333333333      1221 1120000       1234567788


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-----CCCCcccHHHHHHHHHhCCChhH
Q 002846          366 YAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-----INPRLRSYGPALSVFCNNGDVDK  440 (874)
Q Consensus       366 g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~G-----i~Pd~~tYn~LI~a~~k~G~~~~  440 (874)
                      |++.++.+.|+.|...|.+.-..+--++.++|...+.+++|..++.+.....     ..++......|..+|...+++++
T Consensus       306 ~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~  385 (822)
T PRK14574        306 HQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDK  385 (822)
T ss_pred             hhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHH
Confidence            9999999999999999976556688999999999999999999999986542     22344446789999999999999


Q ss_pred             HHHHHHHHHHcC-------------CCCCHHHH-HHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          441 ACSVEEHMLEHG-------------VYPEEPEL-EALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       441 A~~l~~eM~~~G-------------v~Pd~~ty-~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      |..+++.|.+.-             -.||-..+ ..++..+...|++.+|.++++++...
T Consensus       386 A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~  445 (822)
T PRK14574        386 AYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST  445 (822)
T ss_pred             HHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            999999998731             12333343 33556678899999999999999876

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.07  E-value=0.00079  Score=78.59  Aligned_cols=275  Identities=14%  Similarity=0.071  Sum_probs=196.3

Q ss_pred             ChhHHHHHHHHHhhCCCCCCCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHHhccc
Q 002846          165 NDSGQYKVRGITDEKGSKKSKKDRSEQ-FQLRVELDMCSKRGDVMGAIRLYDKAQRE-G-IKLGQYHYNVLLYLCSSAAV  241 (874)
Q Consensus       165 ~~~~A~~vf~eM~~~g~k~~~g~~Pd~-~tyn~LI~a~~k~G~~~~Al~lf~~M~~~-G-i~pd~~tyn~LL~a~~~~~~  241 (874)
                      +..+|...|+....        ..+|. .+..-+=.+|..-+++++|.++|+..++. . ..-+..+|.++|.-+-+.  
T Consensus       334 ~~~~A~~~~~klp~--------h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~--  403 (638)
T KOG1126|consen  334 NCREALNLFEKLPS--------HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE--  403 (638)
T ss_pred             HHHHHHHHHHhhHH--------hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh--
Confidence            34567777776522        12332 33344446888889999999999999853 2 234678999999877621  


Q ss_pred             CCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCC-Cee
Q 002846          242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS-NGH  320 (874)
Q Consensus       242 ~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~P-d~~  320 (874)
                                  -++.++.      +++.+. .-..-.||.++=++      |.-.++.+.|++.|.+-...  .| ..+
T Consensus       404 ------------v~Ls~La------q~Li~~-~~~sPesWca~GNc------fSLQkdh~~Aik~f~RAiQl--dp~faY  456 (638)
T KOG1126|consen  404 ------------VALSYLA------QDLIDT-DPNSPESWCALGNC------FSLQKDHDTAIKCFKRAIQL--DPRFAY  456 (638)
T ss_pred             ------------HHHHHHH------HHHHhh-CCCCcHHHHHhcch------hhhhhHHHHHHHHHHHhhcc--CCccch
Confidence                        2333332      334332 11145789999999      99999999999999876654  45 556


Q ss_pred             eec--------cccHHHHHHhhhcC-CCCcccccccccccCCccchHH---HHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 002846          321 MKL--------NSQLLDGRSNLERG-PDDQSRKKDWSIDNQDADEIRL---SEDAKKYAFQRGFEIYEKMCLDEVPMNEA  388 (874)
Q Consensus       321 ty~--------~g~~~eA~~l~~~m-~pd~~ty~~w~i~~~~~~n~lI---~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~  388 (874)
                      +|+        ....+.|...|+.. ..|.-.|           |++-   -.|.|.++++.|.-.|+.-.+-+ +-|.+
T Consensus       457 ayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY-----------nAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsv  524 (638)
T KOG1126|consen  457 AYTLLGHESIATEEFDKAMKSFRKALGVDPRHY-----------NAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSV  524 (638)
T ss_pred             hhhhcCChhhhhHHHHhHHHHHHhhhcCCchhh-----------HHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchh
Confidence            666        55678888888876 7788888           5553   45778999999999998877654 33677


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHH
Q 002846          389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP-ELEALLRVS  467 (874)
Q Consensus       389 tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~-ty~~LI~~~  467 (874)
                      ....+-..+-+.|+.|+|++++++.....-+--..-|. ....+...++.++|+..++++++  +.|+.. .|-.|-..|
T Consensus       525 i~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~-~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~  601 (638)
T KOG1126|consen  525 ILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH-RASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIY  601 (638)
T ss_pred             HHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH-HHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHH
Confidence            77788888889999999999999877654333344444 34445567899999999999988  667765 455666778


Q ss_pred             HhcCCchHHHHHHHHHHhcCCCCChh
Q 002846          468 VEAGKGDRVYYLLHKLRTSVRKVSPS  493 (874)
Q Consensus       468 ~~~G~~d~A~~ll~~M~~~~~~~sp~  493 (874)
                      -+.|+.+.|+.=|.-+.+.  .|...
T Consensus       602 k~~~~~~~Al~~f~~A~~l--dpkg~  625 (638)
T KOG1126|consen  602 KRLGNTDLALLHFSWALDL--DPKGA  625 (638)
T ss_pred             HHHccchHHHHhhHHHhcC--CCccc
Confidence            8899999999888887765  54443

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=97.99  E-value=7.3e-06  Score=59.12  Aligned_cols=35  Identities=23%  Similarity=0.313  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 002846          192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ  226 (874)
Q Consensus       192 ~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~  226 (874)
                      ++||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            37999999999999999999999999999999984

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=97.96  E-value=0.002  Score=81.60  Aligned_cols=229  Identities=8%  Similarity=-0.016  Sum_probs=166.3

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhh
Q 002846          190 EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTEL  269 (874)
Q Consensus       190 d~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em  269 (874)
                      +...|..+-..+.. |+..+|+..|.+....  .|+......+..++.          ..|+.++|...|.       .+
T Consensus       476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~----------~~Gr~eeAi~~~r-------ka  535 (987)
T PRK09782        476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAY----------QVEDYATALAAWQ-------KI  535 (987)
T ss_pred             CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHH----------HCCCHHHHHHHHH-------HH
Confidence            34566666555555 8999999988887754  366544333333334          6799999999995       33


Q ss_pred             hhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCccccccccc
Q 002846          270 GDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSI  349 (874)
Q Consensus       270 ~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i  349 (874)
                      ...  -++...+..+...      +.+.|++++|...|++.....  |+....                     +     
T Consensus       536 ~~~--~p~~~a~~~la~a------ll~~Gd~~eA~~~l~qAL~l~--P~~~~l---------------------~-----  579 (987)
T PRK09782        536 SLH--DMSNEDLLAAANT------AQAAGNGAARDRWLQQAEQRG--LGDNAL---------------------Y-----  579 (987)
T ss_pred             hcc--CCCcHHHHHHHHH------HHHCCCHHHHHHHHHHHHhcC--CccHHH---------------------H-----
Confidence            321  1122234444445      778899999999999887753  322111                     0     


Q ss_pred             ccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-cccHHHH
Q 002846          350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPA  428 (874)
Q Consensus       350 ~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd-~~tYn~L  428 (874)
                            ..+...+.+.|++++|...|++..+.  .|+...|..+...+.+.|+.++|...+++....  .|+ ...++.+
T Consensus       580 ------~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nL  649 (987)
T PRK09782        580 ------WWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAAL  649 (987)
T ss_pred             ------HHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence                  12222333559999999999998865  467889999999999999999999999998776  465 4455556


Q ss_pred             HHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          429 LSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       429 I~a~~k~G~~~~A~~l~~eM~~~Gv~P-d~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      -..+...|+.++|..+++...+..  | +...+..|-.++...|++++|...|++....
T Consensus       650 G~aL~~~G~~eeAi~~l~~AL~l~--P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l  706 (987)
T PRK09782        650 GYALWDSGDIAQSREMLERAHKGL--PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD  706 (987)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            668999999999999999988743  5 5567788888899999999999999998876

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.92  E-value=0.00052  Score=79.04  Aligned_cols=276  Identities=11%  Similarity=0.017  Sum_probs=196.6

Q ss_pred             HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 002846          159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS  238 (874)
Q Consensus       159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~  238 (874)
                      .+...++..+|+.+++.|++..  |+     .+..|.-+-.++...|+.+.|...|.+..+  +.|+.+...+-+.-+-+
T Consensus       125 ~~kerg~~~~al~~y~~aiel~--p~-----fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlk  195 (966)
T KOG4626|consen  125 ILKERGQLQDALALYRAAIELK--PK-----FIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLK  195 (966)
T ss_pred             HHHHhchHHHHHHHHHHHHhcC--ch-----hhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHH
Confidence            4557789999999999996632  11     346888899999999999999999999875  45766655544444442


Q ss_pred             cccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCC
Q 002846          239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN  318 (874)
Q Consensus       239 ~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd  318 (874)
                               ..|++++|..-+.      +.++....  =.+.|+-|=..      +-..|.+-.|.+-|++-...  .|+
T Consensus       196 ---------a~Grl~ea~~cYl------kAi~~qp~--fAiawsnLg~~------f~~~Gei~~aiq~y~eAvkl--dP~  250 (966)
T KOG4626|consen  196 ---------AEGRLEEAKACYL------KAIETQPC--FAIAWSNLGCV------FNAQGEIWLAIQHYEEAVKL--DPN  250 (966)
T ss_pred             ---------hhcccchhHHHHH------HHHhhCCc--eeeeehhcchH------HhhcchHHHHHHHHHHhhcC--CCc
Confidence                     3477778877763      22222111  12446666555      77789999999999987765  343


Q ss_pred             ee--eeccccHHHHHHhhhcC----------CCCc-ccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 002846          319 GH--MKLNSQLLDGRSNLERG----------PDDQ-SRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPM  385 (874)
Q Consensus       319 ~~--ty~~g~~~eA~~l~~~m----------~pd~-~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~P  385 (874)
                      -.  -+|.|.+.++...|++.          .|+. +.+           .-|-.-|-..|.++-|++-+++-.+.  .|
T Consensus       251 f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~-----------gNla~iYyeqG~ldlAI~~Ykral~~--~P  317 (966)
T KOG4626|consen  251 FLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAH-----------GNLACIYYEQGLLDLAIDTYKRALEL--QP  317 (966)
T ss_pred             chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhc-----------cceEEEEeccccHHHHHHHHHHHHhc--CC
Confidence            21  22345555444444442          5543 333           33444566889999999999987765  45


Q ss_pred             C-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHH
Q 002846          386 N-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE-PELEA  462 (874)
Q Consensus       386 d-~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd-~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~-~ty~~  462 (874)
                      + ...|+.|..++-..|++.+|.+.++.....  .|+ ..+-+.|=..|...|.+++|..+|....+  +.|+- ..+|-
T Consensus       318 ~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nN  393 (966)
T KOG4626|consen  318 NFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNN  393 (966)
T ss_pred             CchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhh
Confidence            4 568999999999999999999999887665  344 44566688899999999999999988766  44553 45678


Q ss_pred             HHHHHHhcCCchHHHHHHHHHHh
Q 002846          463 LLRVSVEAGKGDRVYYLLHKLRT  485 (874)
Q Consensus       463 LI~~~~~~G~~d~A~~ll~~M~~  485 (874)
                      |-..|-+.|++++|...+++..+
T Consensus       394 La~i~kqqgnl~~Ai~~Ykealr  416 (966)
T KOG4626|consen  394 LASIYKQQGNLDDAIMCYKEALR  416 (966)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHh
Confidence            88888999999999999988764

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=97.90  E-value=1.9e-05  Score=56.93  Aligned_cols=33  Identities=30%  Similarity=0.673  Sum_probs=22.5

Q ss_pred             cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 002846          424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE  456 (874)
Q Consensus       424 tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd  456 (874)
                      +||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            566666666666666666666666666666665

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=97.89  E-value=0.046  Score=68.21  Aligned_cols=301  Identities=11%  Similarity=-0.019  Sum_probs=179.3

Q ss_pred             HHhcCChhHHHHHHHHHhhCCCCCCCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH---H
Q 002846          160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQ--FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLL---Y  234 (874)
Q Consensus       160 ~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~--~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL---~  234 (874)
                      ..+.|+...|+..|++..+.        .|+.  ..+ .++..+...|+.++|+.++++..    .|+...+..++   .
T Consensus        44 ~~r~Gd~~~Al~~L~qaL~~--------~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~  110 (822)
T PRK14574         44 RARAGDTAPVLDYLQEESKA--------GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAAR  110 (822)
T ss_pred             HHhCCCHHHHHHHHHHHHhh--------CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHH
Confidence            45788889999999998432        2331  233 88888889999999999999987    44333333333   3


Q ss_pred             HHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcC
Q 002846          235 LCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG  314 (874)
Q Consensus       235 a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~G  314 (874)
                      .+.          ..|+.++|.+++.       ++.+. .-.|...+..++..      +.+.++.++|++.+..+... 
T Consensus       111 ly~----------~~gdyd~Aiely~-------kaL~~-dP~n~~~l~gLa~~------y~~~~q~~eAl~~l~~l~~~-  165 (822)
T PRK14574        111 AYR----------NEKRWDQALALWQ-------SSLKK-DPTNPDLISGMIMT------QADAGRGGVVLKQATELAER-  165 (822)
T ss_pred             HHH----------HcCCHHHHHHHHH-------HHHhh-CCCCHHHHHHHHHH------HhhcCCHHHHHHHHHHhccc-
Confidence            444          6799999999994       55553 33344445566666      88889999999999988765 


Q ss_pred             CCCCeeeec--------cccHHHHHHhhhcC---CCCcc-cccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002846          315 QFSNGHMKL--------NSQLLDGRSNLERG---PDDQS-RKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDE  382 (874)
Q Consensus       315 i~Pd~~ty~--------~g~~~eA~~l~~~m---~pd~~-ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~G  382 (874)
                       .|+...|.        .++..+|+..++++   .|+.. .+           .-++..+.+.|....|.++..+-... 
T Consensus       166 -dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~-----------~~~~~~l~~~~~~~~a~~l~~~~p~~-  232 (822)
T PRK14574        166 -DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVL-----------KNHLEILQRNRIVEPALRLAKENPNL-  232 (822)
T ss_pred             -CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHH-----------HHHHHHHHHcCCcHHHHHHHHhCccc-
Confidence             34433332        23333455555555   34322 22           34445555555555555544431110 


Q ss_pred             CCCCH------HHHHHHHHHHH-----hcCCh---hHHHHHHHHHHHC-CCCCC-----cccHHHHHHHHHhCCChhHHH
Q 002846          383 VPMNE------ASLTAVGRMAM-----SMGDG---DMAFDMVKRMKSL-GINPR-----LRSYGPALSVFCNNGDVDKAC  442 (874)
Q Consensus       383 v~Pd~------~tyn~LI~~~~-----~~G~~---d~A~~l~~~M~~~-Gi~Pd-----~~tYn~LI~a~~k~G~~~~A~  442 (874)
                      +.+..      .-...+|+.-.     ...++   |.|+.-++.+... +-.|.     ....--.|-++...|+++++.
T Consensus       233 f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi  312 (822)
T PRK14574        233 VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLI  312 (822)
T ss_pred             cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHH
Confidence            00100      00111111110     11122   2233333333321 22232     222234677888999999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC--CChh----HHHHHHHHHhcchHHHhh
Q 002846          443 SVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRK--VSPS----TADVIAKWFNSKEAARLG  511 (874)
Q Consensus       443 ~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~--~sp~----T~~~I~~~~~s~~~~~a~  511 (874)
                      .-|+.|...|...-...-.++-++|...+.+++|..++..+....-.  ..+.    +-...-++..++...+|.
T Consensus       313 ~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~  387 (822)
T PRK14574        313 KEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAY  387 (822)
T ss_pred             HHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHH
Confidence            99999999987655567789999999999999999999998665211  1111    123356666666655544

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.85  E-value=2.1e-05  Score=56.75  Aligned_cols=33  Identities=30%  Similarity=0.585  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 002846          192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL  224 (874)
Q Consensus       192 ~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~p  224 (874)
                      .+||++|.+|++.|+++.|+++|++|++.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            699999999999999999999999999999998

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.82  E-value=0.0092  Score=64.63  Aligned_cols=229  Identities=16%  Similarity=0.144  Sum_probs=162.3

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhh
Q 002846          204 RGDVMGAIRLYDKAQREGIKLGQYHYN---VLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQ  280 (874)
Q Consensus       204 ~G~~~~Al~lf~~M~~~Gi~pd~~tyn---~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vt  280 (874)
                      +.+.++|.++|-+|.+.    |..||-   +|=+.|-          ..|.+++|+.+..       .+.++.+..    
T Consensus        48 s~Q~dKAvdlF~e~l~~----d~~t~e~~ltLGnLfR----------sRGEvDRAIRiHQ-------~L~~spdlT----  102 (389)
T COG2956          48 SNQPDKAVDLFLEMLQE----DPETFEAHLTLGNLFR----------SRGEVDRAIRIHQ-------TLLESPDLT----  102 (389)
T ss_pred             hcCcchHHHHHHHHHhc----CchhhHHHHHHHHHHH----------hcchHHHHHHHHH-------HHhcCCCCc----
Confidence            57889999999999973    333433   3334444          6799999999994       555553333    


Q ss_pred             hHhhhcC-cccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHH
Q 002846          281 LDYGSSP-MIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRL  359 (874)
Q Consensus       281 yn~LI~~-~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI  359 (874)
                      ++--+.+ -.....|-..|-+|.|..+|..+.+.|..          .+.|+                        --|+
T Consensus       103 ~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~ef----------a~~Al------------------------qqLl  148 (389)
T COG2956         103 FEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEF----------AEGAL------------------------QQLL  148 (389)
T ss_pred             hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhh----------hHHHH------------------------HHHH
Confidence            2221111 01122377788999999999998876521          12222                        4577


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHH-HHHHh
Q 002846          360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEA----SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL-SVFCN  434 (874)
Q Consensus       360 ~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~----tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI-~a~~k  434 (874)
                      .-|-+..++++|.++=+++...|-.+..+    -|--|...+....+++.|..++++-.+.  .|+.+--+.++ .-+..
T Consensus       149 ~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~  226 (389)
T COG2956         149 NIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVELA  226 (389)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHh
Confidence            88889999999999999888876544322    3455555666678899999999887665  34444444444 45667


Q ss_pred             CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCChh
Q 002846          435 NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS  493 (874)
Q Consensus       435 ~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~  493 (874)
                      .|+..+|.+.++...+.+-.--..+...|..+|...|+.++....+.++.+...++.+.
T Consensus       227 ~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~  285 (389)
T COG2956         227 KGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAE  285 (389)
T ss_pred             ccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHH
Confidence            89999999999999998765566778899999999999999999999999885565554

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=97.81  E-value=0.0043  Score=78.70  Aligned_cols=220  Identities=10%  Similarity=0.024  Sum_probs=156.2

Q ss_pred             CChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCC
Q 002846          164 TNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGV  243 (874)
Q Consensus       164 ~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~  243 (874)
                      ++.++|...+.+-...        .|+......+...+...|++++|+..|+++...  .|+...+..+-.++.      
T Consensus       490 ~~~~eAi~a~~~Al~~--------~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all------  553 (987)
T PRK09782        490 TLPGVALYAWLQAEQR--------QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQ------  553 (987)
T ss_pred             CCcHHHHHHHHHHHHh--------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHH------
Confidence            6777899977776432        244333333444556899999999999998644  444445555555555      


Q ss_pred             CcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeec
Q 002846          244 VKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL  323 (874)
Q Consensus       244 ~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~  323 (874)
                          +.|+.++|...+.       ..... ...+...+..+...      ....|++++|...|++....  .|+...| 
T Consensus       554 ----~~Gd~~eA~~~l~-------qAL~l-~P~~~~l~~~La~~------l~~~Gr~~eAl~~~~~AL~l--~P~~~a~-  612 (987)
T PRK09782        554 ----AAGNGAARDRWLQ-------QAEQR-GLGDNALYWWLHAQ------RYIPGQPELALNDLTRSLNI--APSANAY-  612 (987)
T ss_pred             ----HCCCHHHHHHHHH-------HHHhc-CCccHHHHHHHHHH------HHhCCCHHHHHHHHHHHHHh--CCCHHHH-
Confidence                6799999999995       33332 21122222222222      33559999999999887765  3443333 


Q ss_pred             cccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 002846          324 NSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDG  403 (874)
Q Consensus       324 ~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~  403 (874)
                                                      ..+-..+.+.|+.++|...|++..... +-+...++.+-..+...|+.
T Consensus       613 --------------------------------~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~  659 (987)
T PRK09782        613 --------------------------------VARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDI  659 (987)
T ss_pred             --------------------------------HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH
Confidence                                            666678899999999999999988764 33567788888899999999


Q ss_pred             hHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH
Q 002846          404 DMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE  457 (874)
Q Consensus       404 d~A~~l~~~M~~~Gi~Pd-~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~  457 (874)
                      ++|..++++..+.  .|+ ...+..+-.++...|++++|...|+...+..  |+.
T Consensus       660 eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~--P~~  710 (987)
T PRK09782        660 AQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI--DNQ  710 (987)
T ss_pred             HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCC
Confidence            9999999988775  354 5567778888999999999999999988743  543

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=97.75  E-value=0.0025  Score=73.21  Aligned_cols=58  Identities=9%  Similarity=0.012  Sum_probs=43.7

Q ss_pred             HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 002846          159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIK  223 (874)
Q Consensus       159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~  223 (874)
                      .....++.+.|...++++.+..  |     -+...+..+...|.+.|++++|++++..+.+.+..
T Consensus       162 l~l~~g~~~~Al~~l~~~~~~~--P-----~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~  219 (398)
T PRK10747        162 IQLARNENHAARHGVDKLLEVA--P-----RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVG  219 (398)
T ss_pred             HHHHCCCHHHHHHHHHHHHhcC--C-----CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCC
Confidence            4456788888888888884432  1     12367788888889999999999999999877655

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=97.75  E-value=0.0022  Score=75.12  Aligned_cols=244  Identities=13%  Similarity=0.054  Sum_probs=169.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchh
Q 002846          192 FQLRVELDMCSKRGDVMGAIRLYDKAQRE---GIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTE  268 (874)
Q Consensus       192 ~tyn~LI~a~~k~G~~~~Al~lf~~M~~~---Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~e  268 (874)
                      .+..-|-..|...|+++.|..++....+.   +.-.+.-....++..|+.      -|...+++.+|..+|.       +
T Consensus       200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~------~y~~~~k~~eAv~ly~-------~  266 (508)
T KOG1840|consen  200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILAL------VYRSLGKYDEAVNLYE-------E  266 (508)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHH------HHHHhccHHHHHHHHH-------H
Confidence            56667889999999999999999998743   222444555666665542      2336788899998885       2


Q ss_pred             hh----hcCCCCc---hhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcC----
Q 002846          269 LG----DSRDMDN---NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERG----  337 (874)
Q Consensus       269 m~----~~~gi~d---~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m----  337 (874)
                      +.    ...|-.+   ..+++.|=..      |++.|++++|...+++-.+-                    +...    
T Consensus       267 AL~i~e~~~G~~h~~va~~l~nLa~l------y~~~GKf~EA~~~~e~Al~I--------------------~~~~~~~~  320 (508)
T KOG1840|consen  267 ALTIREEVFGEDHPAVAATLNNLAVL------YYKQGKFAEAEEYCERALEI--------------------YEKLLGAS  320 (508)
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHH------HhccCChHHHHHHHHHHHHH--------------------HHHhhccC
Confidence            21    1123332   2347777677      99999999998887754332                    1110    


Q ss_pred             CCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHH---CCCCCC----HHHHHHHHHHHHhcCChhHHHHHH
Q 002846          338 PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCL---DEVPMN----EASLTAVGRMAMSMGDGDMAFDMV  410 (874)
Q Consensus       338 ~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~---~Gv~Pd----~~tyn~LI~~~~~~G~~d~A~~l~  410 (874)
                      .|.+.+.          .+.+..-|+..+++++|..++..-.+   .-..++    ..+|+.|-..|-+.|++++|.++|
T Consensus       321 ~~~v~~~----------l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~  390 (508)
T KOG1840|consen  321 HPEVAAQ----------LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELY  390 (508)
T ss_pred             hHHHHHH----------HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence            1122111          16677888899999999999976543   112233    358999999999999999999999


Q ss_pred             HHHHHCC----C--CCC-cccHHHHHHHHHhCCChhHHHHHHHH----HHHcCCC-C-CHHHHHHHHHHHHhcCCchHHH
Q 002846          411 KRMKSLG----I--NPR-LRSYGPALSVFCNNGDVDKACSVEEH----MLEHGVY-P-EEPELEALLRVSVEAGKGDRVY  477 (874)
Q Consensus       411 ~~M~~~G----i--~Pd-~~tYn~LI~a~~k~G~~~~A~~l~~e----M~~~Gv~-P-d~~ty~~LI~~~~~~G~~d~A~  477 (874)
                      ++....-    -  .+. -..++-|=..|-+.+...+|.++|.+    |+..|.. | ...+|.-|...|.+.|+++.|.
T Consensus       391 k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~  470 (508)
T KOG1840|consen  391 KKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAE  470 (508)
T ss_pred             HHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHH
Confidence            9876441    1  121 34556677788889999999999976    4333432 3 3468889999999999999999


Q ss_pred             HHHHHHH
Q 002846          478 YLLHKLR  484 (874)
Q Consensus       478 ~ll~~M~  484 (874)
                      ++.+...
T Consensus       471 ~~~~~~~  477 (508)
T KOG1840|consen  471 ELEEKVL  477 (508)
T ss_pred             HHHHHHH
Confidence            9998765

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.73  E-value=4.5e-05  Score=54.97  Aligned_cols=32  Identities=31%  Similarity=0.542  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 002846          389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP  420 (874)
Q Consensus       389 tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~P  420 (874)
                      |||++|++|++.|+++.|+++|++|++.|++|
T Consensus         3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            45555555555555555555555555555444

>PRK12370 invasion protein regulator; Provisional

Probab=97.72  E-value=0.0072  Score=72.56  Aligned_cols=246  Identities=12%  Similarity=0.020  Sum_probs=143.6

Q ss_pred             hhHHHHHHHHHhhCCCCCCCCCCCC-HHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002846          166 DSGQYKVRGITDEKGSKKSKKDRSE-QFQLRVELDMCS---------KRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYL  235 (874)
Q Consensus       166 ~~~A~~vf~eM~~~g~k~~~g~~Pd-~~tyn~LI~a~~---------k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a  235 (874)
                      ...|...|++..+.        .|+ ...|..+-.++.         ..+++++|...+++..+.. +-+...+..+=.+
T Consensus       277 ~~~A~~~~~~Al~l--------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~  347 (553)
T PRK12370        277 LQQALKLLTQCVNM--------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLI  347 (553)
T ss_pred             HHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence            56888999987432        233 234443333322         2345889999999988653 2234555555444


Q ss_pred             HHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCC
Q 002846          236 CSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQ  315 (874)
Q Consensus       236 ~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi  315 (874)
                      +.          ..|+.++|...|.       +..+. .-.+...|..+-..      +...|++++|...+++..+.. 
T Consensus       348 ~~----------~~g~~~~A~~~~~-------~Al~l-~P~~~~a~~~lg~~------l~~~G~~~eAi~~~~~Al~l~-  402 (553)
T PRK12370        348 NT----------IHSEYIVGSLLFK-------QANLL-SPISADIKYYYGWN------LFMAGQLEEALQTINECLKLD-  402 (553)
T ss_pred             HH----------HccCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHCCCHHHHHHHHHHHHhcC-
Confidence            44          5688888988885       33332 22234445555555      777888888888888876653 


Q ss_pred             CCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 002846          316 FSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVG  394 (874)
Q Consensus       316 ~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~P-d~~tyn~LI  394 (874)
                       |+...+                     +           ..+...+...|++++|...+++..... .| +...+..+-
T Consensus       403 -P~~~~~---------------------~-----------~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la  448 (553)
T PRK12370        403 -PTRAAA---------------------G-----------ITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQV  448 (553)
T ss_pred             -CCChhh---------------------H-----------HHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHH
Confidence             321111                     0           222333555778888888888876553 23 344566677


Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCCCccc-HHHHHHHHHhCCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCC
Q 002846          395 RMAMSMGDGDMAFDMVKRMKSLGINPRLRS-YGPALSVFCNNGDVDKACSVEEHMLEH-GVYPEEPELEALLRVSVEAGK  472 (874)
Q Consensus       395 ~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~t-Yn~LI~a~~k~G~~~~A~~l~~eM~~~-Gv~Pd~~ty~~LI~~~~~~G~  472 (874)
                      .++...|+.++|...+.++...  .|+... .+.+-..|+..|  ++|...++.+.+. .-.+...-+..++.  .-.|+
T Consensus       449 ~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~--~~~g~  522 (553)
T PRK12370        449 MFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVL--VAHGE  522 (553)
T ss_pred             HHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHH--HHHhh
Confidence            7778888888888888776544  343332 333444556666  4777766666543 22233333333333  33455


Q ss_pred             chHHHHHHHHHHhc
Q 002846          473 GDRVYYLLHKLRTS  486 (874)
Q Consensus       473 ~d~A~~ll~~M~~~  486 (874)
                      -+.+..+ +++.+.
T Consensus       523 ~~~~~~~-~~~~~~  535 (553)
T PRK12370        523 AIAEKMW-NKFKNE  535 (553)
T ss_pred             hHHHHHH-HHhhcc
Confidence            5555555 666655

>PRK12370 invasion protein regulator; Provisional

Probab=97.61  E-value=0.0062  Score=73.12  Aligned_cols=240  Identities=10%  Similarity=-0.051  Sum_probs=136.5

Q ss_pred             CCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhc
Q 002846          189 SEQFQLRVELDMCSK-----RGDVMGAIRLYDKAQREGIKLGQ-YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVS  262 (874)
Q Consensus       189 Pd~~tyn~LI~a~~k-----~G~~~~Al~lf~~M~~~Gi~pd~-~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~  262 (874)
                      .+...|...+.+-..     .+++++|+.+|++..+.  .|+. ..|..|-.++...+..+. ....++.++|...+.  
T Consensus       254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~-~~~~~~~~~A~~~~~--  328 (553)
T PRK12370        254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGI-FDKQNAMIKAKEHAI--  328 (553)
T ss_pred             CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCC-cccchHHHHHHHHHH--
Confidence            344566666665422     23578999999998854  4553 344433333321110000 113355677777774  


Q ss_pred             ccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcc
Q 002846          263 TMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQS  342 (874)
Q Consensus       263 ~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~  342 (874)
                           +..+. +-.+...|..+-..      +...|++++|...|++..+..  |+....                    
T Consensus       329 -----~Al~l-dP~~~~a~~~lg~~------~~~~g~~~~A~~~~~~Al~l~--P~~~~a--------------------  374 (553)
T PRK12370        329 -----KATEL-DHNNPQALGLLGLI------NTIHSEYIVGSLLFKQANLLS--PISADI--------------------  374 (553)
T ss_pred             -----HHHhc-CCCCHHHHHHHHHH------HHHccCHHHHHHHHHHHHHhC--CCCHHH--------------------
Confidence                 33222 22244455555444      667788888888888776653  332211                    


Q ss_pred             cccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc
Q 002846          343 RKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL  422 (874)
Q Consensus       343 ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~  422 (874)
                       |           ..+-..+...|+.++|...|++..+..-. +...+..++..+...|++++|...+++..... .|+.
T Consensus       375 -~-----------~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~  440 (553)
T PRK12370        375 -K-----------YYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDN  440 (553)
T ss_pred             -H-----------HHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccC
Confidence             1           44455667788888888888887765422 22233334445666788888888887776542 2433


Q ss_pred             c-cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCchHHHHHHHHHHh
Q 002846          423 R-SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE-LEALLRVSVEAGKGDRVYYLLHKLRT  485 (874)
Q Consensus       423 ~-tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~t-y~~LI~~~~~~G~~d~A~~ll~~M~~  485 (874)
                      . .+..+-..|...|+.++|.+.+..+...  .|+... .+.|-..|+..|  ++|...++.+.+
T Consensus       441 ~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~  501 (553)
T PRK12370        441 PILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLE  501 (553)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence            3 3444556666788888888888776543  243333 334444556656  467776666655

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.54  E-value=7e-05  Score=52.65  Aligned_cols=31  Identities=19%  Similarity=0.355  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 002846          192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGI  222 (874)
Q Consensus       192 ~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi  222 (874)
                      ++||+||++|++.|++++|.++|++|++.|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            4899999999999999999999999999885

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.53  E-value=0.0064  Score=67.81  Aligned_cols=192  Identities=9%  Similarity=0.043  Sum_probs=134.2

Q ss_pred             hcCChHHHHHHHHHHHHcCCCCCeeeec-------cccHHHHHHhhhcC----CCCcccccccccccCCccchHHHHHHh
Q 002846          296 SSYRFDDLDSTFNEKENLGQFSNGHMKL-------NSQLLDGRSNLERG----PDDQSRKKDWSIDNQDADEIRLSEDAK  364 (874)
Q Consensus       296 ~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~-------~g~~~eA~~l~~~m----~pd~~ty~~w~i~~~~~~n~lI~~~~k  364 (874)
                      -.|++++|.+.+.|-....-.-....||       .|++++|+..|-.+    ..++.+.           --+-+-|--
T Consensus       502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl-----------~qianiye~  570 (840)
T KOG2003|consen  502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVL-----------VQIANIYEL  570 (840)
T ss_pred             ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHH-----------HHHHHHHHH
Confidence            3577888888888776653222222233       67888888877665    2222222           233345555


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHH
Q 002846          365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSV  444 (874)
Q Consensus       365 ~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l  444 (874)
                      ..+...|++++-+... -++-|....+-|.+.|-+.|+-..|++.+-+--.. ++.++.|..-|-..|....-+++|...
T Consensus       571 led~aqaie~~~q~~s-lip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y  648 (840)
T KOG2003|consen  571 LEDPAQAIELLMQANS-LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINY  648 (840)
T ss_pred             hhCHHHHHHHHHHhcc-cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHH
Confidence            6677778887754332 24457889999999999999999999987653322 556777877788888888999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHH-hcCCchHHHHHHHHHHhcCCCCChh-HHHHHHHHHhc
Q 002846          445 EEHMLEHGVYPEEPELEALLRVSV-EAGKGDRVYYLLHKLRTSVRKVSPS-TADVIAKWFNS  504 (874)
Q Consensus       445 ~~eM~~~Gv~Pd~~ty~~LI~~~~-~~G~~d~A~~ll~~M~~~~~~~sp~-T~~~I~~~~~s  504 (874)
                      |+...-  +.|+..-|..||..|. +.|++.+|++++..+...  .|..- ....+...|..
T Consensus       649 ~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk--fpedldclkflvri~~d  706 (840)
T KOG2003|consen  649 FEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK--FPEDLDCLKFLVRIAGD  706 (840)
T ss_pred             HHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--CccchHHHHHHHHHhcc
Confidence            987644  6799999999998875 679999999999998876  43322 44445555443

>TIGR00540 hemY_coli hemY protein

Probab=97.52  E-value=0.0099  Score=68.58  Aligned_cols=272  Identities=7%  Similarity=-0.052  Sum_probs=171.9

Q ss_pred             hhhhhchHHHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 002846          151 VNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYN  230 (874)
Q Consensus       151 ~~~~l~~~~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn  230 (874)
                      .+..+.-+...+.++.+.|.+.+....+.-  |+    +....--+....+...|+++.|+..++++.+.. +-+...+-
T Consensus       119 ~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~----~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~  191 (409)
T TIGR00540       119 LNLIKAAEAAQQRGDEARANQHLEEAAELA--GN----DNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLK  191 (409)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--Cc----CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence            344555556777899999999999974321  11    111233334677788999999999999999775 33556677


Q ss_pred             HHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhh-hcCcccChhhhhcCChHHHHHHHHH
Q 002846          231 VLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYG-SSPMIDKLESNSSYRFDDLDSTFNE  309 (874)
Q Consensus       231 ~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~L-I~~~~~~~~~~~~g~~e~A~~lf~e  309 (874)
                      .+..++.          ..|+.++|...+.       .+.+. ++.+.-.+..+ +.+   ...+...+.-+.+.+.+..
T Consensus       192 ll~~~~~----------~~~d~~~a~~~l~-------~l~k~-~~~~~~~~~~l~~~a---~~~~l~~~~~~~~~~~L~~  250 (409)
T TIGR00540       192 LAEEAYI----------RSGAWQALDDIID-------NMAKA-GLFDDEEFADLEQKA---EIGLLDEAMADEGIDGLLN  250 (409)
T ss_pred             HHHHHHH----------HHhhHHHHHHHHH-------HHHHc-CCCCHHHHHHHHHHH---HHHHHHHHHHhcCHHHHHH
Confidence            7777887          7799999999985       44443 33321111100 000   0000111111111222222


Q ss_pred             HHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 002846          310 KENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEAS  389 (874)
Q Consensus       310 M~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~t  389 (874)
                      +...-  |..                 ...+...+           -.+...+...|+.++|.+++++..+..  ||...
T Consensus       251 ~~~~~--p~~-----------------~~~~~~l~-----------~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~  298 (409)
T TIGR00540       251 WWKNQ--PRH-----------------RRHNIALK-----------IALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRA  298 (409)
T ss_pred             HHHHC--CHH-----------------HhCCHHHH-----------HHHHHHHHHCCChHHHHHHHHHHHhhC--CCccc
Confidence            22221  100                 00122333           677788999999999999999998864  44432


Q ss_pred             ---HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcc--cH-HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 002846          390 ---LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR--SY-GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL  463 (874)
Q Consensus       390 ---yn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~--tY-n~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~L  463 (874)
                         .....-.....++.+.+.+.++...+.  .|+..  .+ .++=..+.+.|++++|.+.|+........|+...+..|
T Consensus       299 ~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~L  376 (409)
T TIGR00540       299 ISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMA  376 (409)
T ss_pred             chhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHH
Confidence               122222233457888898888877654  46655  33 34556677899999999999954444456999999999


Q ss_pred             HHHHHhcCCchHHHHHHHHHH
Q 002846          464 LRVSVEAGKGDRVYYLLHKLR  484 (874)
Q Consensus       464 I~~~~~~G~~d~A~~ll~~M~  484 (874)
                      -..+.+.|+.++|.+++++-.
T Consensus       377 a~ll~~~g~~~~A~~~~~~~l  397 (409)
T TIGR00540       377 ADAFDQAGDKAEAAAMRQDSL  397 (409)
T ss_pred             HHHHHHcCCHHHHHHHHHHHH
Confidence            999999999999999998753

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.50  E-value=0.00012  Score=51.46  Aligned_cols=29  Identities=31%  Similarity=0.620  Sum_probs=15.3

Q ss_pred             cHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 002846          424 SYGPALSVFCNNGDVDKACSVEEHMLEHG  452 (874)
Q Consensus       424 tYn~LI~a~~k~G~~~~A~~l~~eM~~~G  452 (874)
                      |||++|++|++.|++++|.++|++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            45555555555555555555555555544

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.41  E-value=0.021  Score=66.34  Aligned_cols=249  Identities=16%  Similarity=0.108  Sum_probs=176.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhh
Q 002846          192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL-GQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG  270 (874)
Q Consensus       192 ~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~p-d~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~  270 (874)
                      .+|.-+-+.+-..|++.+|+.+|+.|.+.  +| ....|.-+-.++.          ..|+.+.|.+.|.      +.+.
T Consensus       117 e~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~----------~~~~~~~a~~~~~------~alq  178 (966)
T KOG4626|consen  117 EAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALV----------TQGDLELAVQCFF------EALQ  178 (966)
T ss_pred             HHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHH----------hcCCCcccHHHHH------HHHh
Confidence            68888889999999999999999999864  34 3456766767777          6788888888884      2222


Q ss_pred             hcCCCCchhh-hHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCC-eeeec--------cccHHHHHHhhhcC---
Q 002846          271 DSRDMDNNGQ-LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN-GHMKL--------NSQLLDGRSNLERG---  337 (874)
Q Consensus       271 ~~~gi~d~vt-yn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd-~~ty~--------~g~~~eA~~l~~~m---  337 (874)
                      -....-.+.+ ...|+++         .|++++|...+.+-.+.  .|. .+.|+        .|.+..|...|++.   
T Consensus       179 lnP~l~ca~s~lgnLlka---------~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl  247 (966)
T KOG4626|consen  179 LNPDLYCARSDLGNLLKA---------EGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL  247 (966)
T ss_pred             cCcchhhhhcchhHHHHh---------hcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC
Confidence            1101112222 4445444         78999999888776654  232 23343        78999999998886   


Q ss_pred             CCCc-ccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 002846          338 PDDQ-SRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKS  415 (874)
Q Consensus       338 ~pd~-~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd-~~tyn~LI~~~~~~G~~d~A~~l~~~M~~  415 (874)
                      .|+- -.|           --|=..|...+.+++|...+.+-.  ...|+ .+.|..|...|-..|.+|.|++.+++..+
T Consensus       248 dP~f~dAY-----------iNLGnV~ke~~~~d~Avs~Y~rAl--~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~  314 (966)
T KOG4626|consen  248 DPNFLDAY-----------INLGNVYKEARIFDRAVSCYLRAL--NLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE  314 (966)
T ss_pred             CCcchHHH-----------hhHHHHHHHHhcchHHHHHHHHHH--hcCCcchhhccceEEEEeccccHHHHHHHHHHHHh
Confidence            3321 111           112233444455566666555433  33454 56788888889999999999999998876


Q ss_pred             CCCCCC-cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          416 LGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       416 ~Gi~Pd-~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd-~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      .  .|+ ...|+.|-.++-..|++.+|...+.....-.  |+ ....+-|-..|...|.+++|..++..-.+-
T Consensus       315 ~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~--p~hadam~NLgni~~E~~~~e~A~~ly~~al~v  383 (966)
T KOG4626|consen  315 L--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC--PNHADAMNNLGNIYREQGKIEEATRLYLKALEV  383 (966)
T ss_pred             c--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence            4  676 4689999999999999999999999887643  43 456788888999999999999999887654

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.30  E-value=0.0014  Score=60.68  Aligned_cols=79  Identities=14%  Similarity=0.219  Sum_probs=50.2

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCcccHHHHHHHHHhCC--------ChhHHHHHHHHHHHcCCCCCHHHHH
Q 002846          391 TAVGRMAMSMGDGDMAFDMVKRMKSLGI-NPRLRSYGPALSVFCNNG--------DVDKACSVEEHMLEHGVYPEEPELE  461 (874)
Q Consensus       391 n~LI~~~~~~G~~d~A~~l~~~M~~~Gi-~Pd~~tYn~LI~a~~k~G--------~~~~A~~l~~eM~~~Gv~Pd~~ty~  461 (874)
                      ...|..|...+++.....++..+++.|+ .|.+.+|+.+|.+.++..        ++-.++.+|++|...+++|+..||+
T Consensus        29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn  108 (120)
T PF08579_consen   29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN  108 (120)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence            3344445555666666666666666666 566666666666665542        2345667777888778888888888


Q ss_pred             HHHHHHHh
Q 002846          462 ALLRVSVE  469 (874)
Q Consensus       462 ~LI~~~~~  469 (874)
                      .+|..+.+
T Consensus       109 ivl~~Llk  116 (120)
T PF08579_consen  109 IVLGSLLK  116 (120)
T ss_pred             HHHHHHHH
Confidence            88777654

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.28  E-value=0.14  Score=57.20  Aligned_cols=281  Identities=11%  Similarity=0.010  Sum_probs=167.5

Q ss_pred             cCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccC
Q 002846          163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVG  242 (874)
Q Consensus       163 ~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~  242 (874)
                      .|+...|.++..+-.+.+      ..|- ..|-.-..+--+.||.+.|-.++.+..+.-=.++...+-+.-....     
T Consensus        97 eG~~~qAEkl~~rnae~~------e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll-----  164 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHG------EQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL-----  164 (400)
T ss_pred             cCcHHHHHHHHHHhhhcC------cchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH-----
Confidence            578899999988863332      3333 6777778888899999999999999986533455555555555555     


Q ss_pred             CCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeee
Q 002846          243 VVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMK  322 (874)
Q Consensus       243 ~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty  322 (874)
                           ..|+...|..-++       +..+. +-.+...-.....+      |.+.|.+...+.++..|.+.|+.-|.-.-
T Consensus       165 -----~~~d~~aA~~~v~-------~ll~~-~pr~~~vlrLa~r~------y~~~g~~~~ll~~l~~L~ka~~l~~~e~~  225 (400)
T COG3071         165 -----NRRDYPAARENVD-------QLLEM-TPRHPEVLRLALRA------YIRLGAWQALLAILPKLRKAGLLSDEEAA  225 (400)
T ss_pred             -----hCCCchhHHHHHH-------HHHHh-CcCChHHHHHHHHH------HHHhccHHHHHHHHHHHHHccCCChHHHH
Confidence                 4566666666654       22221 22256668888888      99999999999999999999875544221


Q ss_pred             ccccHHHHHHhhhcC-CCCc----ccccccccccCCcc------chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 002846          323 LNSQLLDGRSNLERG-PDDQ----SRKKDWSIDNQDAD------EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLT  391 (874)
Q Consensus       323 ~~g~~~eA~~l~~~m-~pd~----~ty~~w~i~~~~~~------n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn  391 (874)
                      - -+..--..++++. .++.    .+|  |.=..+...      .+++.-+.++|+.++|.++.++-.+++..|...   
T Consensus       226 ~-le~~a~~glL~q~~~~~~~~gL~~~--W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~---  299 (400)
T COG3071         226 R-LEQQAWEGLLQQARDDNGSEGLKTW--WKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC---  299 (400)
T ss_pred             H-HHHHHHHHHHHHHhccccchHHHHH--HHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH---
Confidence            1 0000000011111 0000    011  111111111      345556667777777777777777666655511   


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHH-HCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 002846          392 AVGRMAMSMGDGDMAFDMVKRMK-SLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA  470 (874)
Q Consensus       392 ~LI~~~~~~G~~d~A~~l~~~M~-~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~  470 (874)
                       ..-.+.+-++.+.-.+..+.-. ..+-.|  -.+.+|=.-|.+.+.+.+|...|+.-.+  ..|+..+|+.+-+++.+.
T Consensus       300 -~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~  374 (400)
T COG3071         300 -RLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQL  374 (400)
T ss_pred             -HHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHc
Confidence             1122334455555444444332 334444  3344444555677777777777775554  347777777777777777


Q ss_pred             CCchHHHHHHHHHHh
Q 002846          471 GKGDRVYYLLHKLRT  485 (874)
Q Consensus       471 G~~d~A~~ll~~M~~  485 (874)
                      |+..+|.++.++-..
T Consensus       375 g~~~~A~~~r~e~L~  389 (400)
T COG3071         375 GEPEEAEQVRREALL  389 (400)
T ss_pred             CChHHHHHHHHHHHH
Confidence            777777777766443

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=97.18  E-value=0.017  Score=67.72  Aligned_cols=239  Identities=13%  Similarity=0.075  Sum_probs=160.1

Q ss_pred             HHHhcCChhHHHHHHHHHhhCCCCCCCC-CCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHH---HcCCCCCHH----HH
Q 002846          159 KMEQRTNDSGQYKVRGITDEKGSKKSKK-DRSEQFQL-RVELDMCSKRGDVMGAIRLYDKAQ---REGIKLGQY----HY  229 (874)
Q Consensus       159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g-~~Pd~~ty-n~LI~a~~k~G~~~~Al~lf~~M~---~~Gi~pd~~----ty  229 (874)
                      .....++++.|..+|+.-.+. .++..| ..|.+.+. +.+=..|...+++.+|..+|.++.   +...-++..    ++
T Consensus       208 ~y~~~g~~e~A~~l~k~Al~~-l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l  286 (508)
T KOG1840|consen  208 MYAVQGRLEKAEPLCKQALRI-LEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATL  286 (508)
T ss_pred             HHHHhccHHHHHHHHHHHHHH-HHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            456778999999999986543 112222 34554433 335567888999999999999997   333334444    34


Q ss_pred             HHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhc-CCCC--chhh-hHhhhcCcccChhhhhcCChHHHHH
Q 002846          230 NVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS-RDMD--NNGQ-LDYGSSPMIDKLESNSSYRFDDLDS  305 (874)
Q Consensus       230 n~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~-~gi~--d~vt-yn~LI~~~~~~~~~~~~g~~e~A~~  305 (874)
                      +.|=.+|+          +.|++++|...++..    -++..+ .+..  .+.+ ++.+...      ++..+++++|..
T Consensus       287 ~nLa~ly~----------~~GKf~EA~~~~e~A----l~I~~~~~~~~~~~v~~~l~~~~~~------~~~~~~~Eea~~  346 (508)
T KOG1840|consen  287 NNLAVLYY----------KQGKFAEAEEYCERA----LEIYEKLLGASHPEVAAQLSELAAI------LQSMNEYEEAKK  346 (508)
T ss_pred             HHHHHHHh----------ccCChHHHHHHHHHH----HHHHHHhhccChHHHHHHHHHHHHH------HHHhcchhHHHH
Confidence            44444566          889999998888511    122222 1222  3434 6666666      889999999999


Q ss_pred             HHHHHHHcCCCCCeeeeccccHHHHHHhhhc-CCCCc----ccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHH
Q 002846          306 TFNEKENLGQFSNGHMKLNSQLLDGRSNLER-GPDDQ----SRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCL  380 (874)
Q Consensus       306 lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~-m~pd~----~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~  380 (874)
                      ++..-.+.                    +.. +.++.    .+|           +-|=..|-+.|++++|.++|++...
T Consensus       347 l~q~al~i--------------------~~~~~g~~~~~~a~~~-----------~nl~~l~~~~gk~~ea~~~~k~ai~  395 (508)
T KOG1840|consen  347 LLQKALKI--------------------YLDAPGEDNVNLAKIY-----------ANLAELYLKMGKYKEAEELYKKAIQ  395 (508)
T ss_pred             HHHHHHHH--------------------HHhhccccchHHHHHH-----------HHHHHHHHHhcchhHHHHHHHHHHH
Confidence            88854332                    111 11111    123           6677788899999999999987664


Q ss_pred             C-----C-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH----HCCC-CCC-cccHHHHHHHHHhCCChhHHHHHHHH
Q 002846          381 D-----E-VPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMK----SLGI-NPR-LRSYGPALSVFCNNGDVDKACSVEEH  447 (874)
Q Consensus       381 ~-----G-v~Pd-~~tyn~LI~~~~~~G~~d~A~~l~~~M~----~~Gi-~Pd-~~tYn~LI~a~~k~G~~~~A~~l~~e  447 (874)
                      .     | ..+. -..++-|-..|.+.++.++|.++|.+-.    ..|. .|+ ..+|..|...|-..|++++|.++.+.
T Consensus       396 ~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~  475 (508)
T KOG1840|consen  396 ILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEK  475 (508)
T ss_pred             HHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            2     1 1232 4567888999999999999999998643    3332 133 46888899999999999999999887


Q ss_pred             HH
Q 002846          448 ML  449 (874)
Q Consensus       448 M~  449 (874)
                      ..
T Consensus       476 ~~  477 (508)
T KOG1840|consen  476 VL  477 (508)
T ss_pred             HH
Confidence            65

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.14  E-value=0.26  Score=58.44  Aligned_cols=277  Identities=13%  Similarity=0.098  Sum_probs=173.2

Q ss_pred             hHHHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002846          157 NQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQF-QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYL  235 (874)
Q Consensus       157 ~~~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~-tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a  235 (874)
                      ++-+...|+.+.|++.+++-..        .-+|.. .+-..-..+.+.|+.++|..+|..+.+.+  |+-+.|-..|..
T Consensus        11 ~~il~e~g~~~~AL~~L~~~~~--------~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~   80 (517)
T PF12569_consen   11 NSILEEAGDYEEALEHLEKNEK--------QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEE   80 (517)
T ss_pred             HHHHHHCCCHHHHHHHHHhhhh--------hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHH
Confidence            3456788999999999987522        223334 44555678889999999999999999875  666666655555


Q ss_pred             HHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCC--chhhhHhhhcCcccChhhhhcCCh-HHHHHHHHHHHH
Q 002846          236 CSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRF-DDLDSTFNEKEN  312 (874)
Q Consensus       236 ~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~--d~vtyn~LI~~~~~~~~~~~~g~~-e~A~~lf~eM~~  312 (874)
                      |.....    .-.....+....+++       ++...  .+  +.+-.-.|.        +.....+ ..+...+..+..
T Consensus        81 ~~g~~~----~~~~~~~~~~~~~y~-------~l~~~--yp~s~~~~rl~L~--------~~~g~~F~~~~~~yl~~~l~  139 (517)
T PF12569_consen   81 ALGLQL----QLSDEDVEKLLELYD-------ELAEK--YPRSDAPRRLPLD--------FLEGDEFKERLDEYLRPQLR  139 (517)
T ss_pred             HHhhhc----ccccccHHHHHHHHH-------HHHHh--CccccchhHhhcc--------cCCHHHHHHHHHHHHHHHHh
Confidence            541110    001234556666664       33332  12  112122221        1121223 345566677778


Q ss_pred             cCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHC----C------
Q 002846          313 LGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD----E------  382 (874)
Q Consensus       313 ~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~----G------  382 (874)
                      +|+.+ .  |                                 +.|-.-|....+.+-..+++..+...    |      
T Consensus       140 KgvPs-l--F---------------------------------~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~  183 (517)
T PF12569_consen  140 KGVPS-L--F---------------------------------SNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGD  183 (517)
T ss_pred             cCCch-H--H---------------------------------HHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCcc
Confidence            88532 1  1                                 33444444444444455555554432    1      


Q ss_pred             ----CCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC
Q 002846          383 ----VPMNEA--SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP  455 (874)
Q Consensus       383 ----v~Pd~~--tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd-~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~P  455 (874)
                          -.|...  ++.-|...|-..|+.++|++.+++-.+.  .|. +.-|..--..|-+.|++++|.+.+++...... -
T Consensus       184 ~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~  260 (517)
T PF12569_consen  184 DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-A  260 (517)
T ss_pred             ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-h
Confidence                124443  4455677788999999999999988776  466 45666666778899999999999999877431 3


Q ss_pred             CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCChhHHHHHHHHHh
Q 002846          456 EEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFN  503 (874)
Q Consensus       456 d~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~T~~~I~~~~~  503 (874)
                      |-..=+-....+.++|++++|..++........++..+...+=..||.
T Consensus       261 DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~  308 (517)
T PF12569_consen  261 DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFE  308 (517)
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHH
Confidence            556666777888999999999999999988744344444444444554

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.13  E-value=0.0021  Score=73.69  Aligned_cols=115  Identities=16%  Similarity=0.187  Sum_probs=98.4

Q ss_pred             chHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 002846          356 EIRLSEDAKKYAFQRGFEIYEKMCLD--EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC  433 (874)
Q Consensus       356 n~lI~~~~k~g~~~~A~~lf~~M~~~--Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~  433 (874)
                      .++++.+....+++.+.+++.+.+..  ....-..|..++|+.|.+.|..+.|..+++.=...|+-||..|||.||+.+.
T Consensus        70 d~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl  149 (429)
T PF10037_consen   70 DIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFL  149 (429)
T ss_pred             HHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHh
Confidence            66777777777888999998888865  3323345567999999999999999999999889999999999999999999


Q ss_pred             hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 002846          434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA  470 (874)
Q Consensus       434 k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~  470 (874)
                      +.|++..|.+|..+|...+...+..|+.--+.+|.+.
T Consensus       150 ~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  150 KKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             hcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            9999999999999999998888888888888887766

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.10  E-value=0.0029  Score=65.32  Aligned_cols=101  Identities=18%  Similarity=0.298  Sum_probs=83.8

Q ss_pred             CCCHHHHHHHHHHHHh-----cCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCC----------------ChhHHH
Q 002846          384 PMNEASLTAVGRMAMS-----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG----------------DVDKAC  442 (874)
Q Consensus       384 ~Pd~~tyn~LI~~~~~-----~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G----------------~~~~A~  442 (874)
                      ..|-.+|..+|+.|.+     .|.++-....++.|.+-|+.-|+.+|+.||+.+=+..                +-+-|.
T Consensus        44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i  123 (228)
T PF06239_consen   44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI  123 (228)
T ss_pred             cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence            4588999999999985     4789999999999999999999999999999887642                336789


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHH
Q 002846          443 SVEEHMLEHGVYPEEPELEALLRVSVEAGKG-DRVYYLLHKLR  484 (874)
Q Consensus       443 ~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~-d~A~~ll~~M~  484 (874)
                      +|+++|...||.||..|+..|++.+.+.+.. .+..+++--|.
T Consensus       124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp  166 (228)
T PF06239_consen  124 DLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP  166 (228)
T ss_pred             HHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            9999999999999999999999999887763 34444444443

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.07  E-value=0.0039  Score=57.91  Aligned_cols=80  Identities=8%  Similarity=0.023  Sum_probs=68.7

Q ss_pred             chHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------ChhHHHHHHHHHHHCCCCCCcccHH
Q 002846          356 EIRLSEDAKKYAFQRGFEIYEKMCLDEV-PMNEASLTAVGRMAMSMG--------DGDMAFDMVKRMKSLGINPRLRSYG  426 (874)
Q Consensus       356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv-~Pd~~tyn~LI~~~~~~G--------~~d~A~~l~~~M~~~Gi~Pd~~tYn  426 (874)
                      ...|..+...+++.....+|+.+++.|+ .|++.+|+.++++.++..        ++-.++.++..|...+++|+..||+
T Consensus        29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn  108 (120)
T PF08579_consen   29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN  108 (120)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence            3456666677999999999999999999 999999999999998743        3446788999999999999999999


Q ss_pred             HHHHHHHhC
Q 002846          427 PALSVFCNN  435 (874)
Q Consensus       427 ~LI~a~~k~  435 (874)
                      .+|..+.+.
T Consensus       109 ivl~~Llkg  117 (120)
T PF08579_consen  109 IVLGSLLKG  117 (120)
T ss_pred             HHHHHHHHh
Confidence            999988653

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=96.91  E-value=0.011  Score=67.99  Aligned_cols=131  Identities=13%  Similarity=0.146  Sum_probs=107.7

Q ss_pred             HHHHHHH---CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCcccHHHHHHHHHhCCChhHHHHHHHHH
Q 002846          374 IYEKMCL---DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL--GINPRLRSYGPALSVFCNNGDVDKACSVEEHM  448 (874)
Q Consensus       374 lf~~M~~---~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~--Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM  448 (874)
                      ++..|..   .+..-+......+++.+....+++++..++-..+..  ...-...|..++|..|.+.|..++|.+++..=
T Consensus        50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~  129 (429)
T PF10037_consen   50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR  129 (429)
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence            4555543   355668889999999999999999999999888765  23233456679999999999999999999999


Q ss_pred             HHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCChhHHHH-HHHHHhc
Q 002846          449 LEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWFNS  504 (874)
Q Consensus       449 ~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~T~~~-I~~~~~s  504 (874)
                      ...|+-||..|||.||+.+.+.|++..|.++...|......-.|.|+.. +..+++-
T Consensus       130 ~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  130 LQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             hhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999988765666677766 5554443

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=96.81  E-value=0.29  Score=59.65  Aligned_cols=293  Identities=14%  Similarity=0.090  Sum_probs=163.4

Q ss_pred             HHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 002846          160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA  239 (874)
Q Consensus       160 ~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~  239 (874)
                      ..+.++...|.-.|.+.++...       ++.-.+--=+..|-+.|+...|..-|.+|....=..|-.-+-.+|...++.
T Consensus       217 s~~~~~i~qA~~cy~rAI~~~p-------~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~  289 (895)
T KOG2076|consen  217 SEQLGNINQARYCYSRAIQANP-------SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHY  289 (895)
T ss_pred             HHhcccHHHHHHHHHHHHhcCC-------cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHH
Confidence            3444555566666666544221       111222222345667788888888888877543222333333444433311


Q ss_pred             ccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCe
Q 002846          240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG  319 (874)
Q Consensus       240 ~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~  319 (874)
                            |-..+..+.|...+.      .-.....+....-.+|++...      |.+..+++.|.....++..+...+|.
T Consensus       290 ------~~~~~~~e~a~~~le------~~~s~~~~~~~~ed~ni~ael------~l~~~q~d~~~~~i~~~~~r~~e~d~  351 (895)
T KOG2076|consen  290 ------FITHNERERAAKALE------GALSKEKDEASLEDLNILAEL------FLKNKQSDKALMKIVDDRNRESEKDD  351 (895)
T ss_pred             ------HHHhhHHHHHHHHHH------HHHhhccccccccHHHHHHHH------HHHhHHHHHhhHHHHHHhccccCCCh
Confidence                  113444577777774      111111112234457777777      99999999999999999885555544


Q ss_pred             eee----------------------c--------------cccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHH
Q 002846          320 HMK----------------------L--------------NSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDA  363 (874)
Q Consensus       320 ~ty----------------------~--------------~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~  363 (874)
                      .-+                      .              .+...+++.-|..- .+     -|......-.--+..+|.
T Consensus       352 ~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~-~n-----~~~~d~~dL~~d~a~al~  425 (895)
T KOG2076|consen  352 SEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVE-DN-----VWVSDDVDLYLDLADALT  425 (895)
T ss_pred             hhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHH-hc-----CChhhhHHHHHHHHHHHH
Confidence            333                      1              11111111111110 00     011111111144557778


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhCCChhHHH
Q 002846          364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKAC  442 (874)
Q Consensus       364 k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd-~~tYn~LI~a~~k~G~~~~A~  442 (874)
                      ..|++.+|+++|..+...-.--+.+.|--+-++|-..|..++|.+.++.....  .|+ .-.--+|=.-+-+.|+.++|.
T Consensus       426 ~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~Ekal  503 (895)
T KOG2076|consen  426 NIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKAL  503 (895)
T ss_pred             hcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHH
Confidence            88888888888888887655556778888888888888888888888877654  343 222233444556778888888


Q ss_pred             HHHHHHH--------HcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 002846          443 SVEEHML--------EHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT  485 (874)
Q Consensus       443 ~l~~eM~--------~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~  485 (874)
                      +.+..|.        ..+..|+....--..+.+...|+.++-......|..
T Consensus       504 EtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~  554 (895)
T KOG2076|consen  504 ETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVD  554 (895)
T ss_pred             HHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            8887753        233455555555555666677776665444444443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.76  E-value=0.44  Score=53.38  Aligned_cols=248  Identities=14%  Similarity=0.034  Sum_probs=152.2

Q ss_pred             HHHHHHHHH--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhc
Q 002846          195 RVELDMCSK--RGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS  272 (874)
Q Consensus       195 n~LI~a~~k--~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~  272 (874)
                      ..++.+..+  .|++..|.++..+-.+.+-.|   +.+.++.+-+- .       ..|+.+++-..+.       +..+.
T Consensus        86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p---~l~~l~aA~AA-~-------qrgd~~~an~yL~-------eaae~  147 (400)
T COG3071          86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP---VLAYLLAAEAA-Q-------QRGDEDRANRYLA-------EAAEL  147 (400)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcch---HHHHHHHHHHH-H-------hcccHHHHHHHHH-------HHhcc
Confidence            345555544  588888888888877766554   34444444431 1       5677777777774       22221


Q ss_pred             CCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccC
Q 002846          273 RDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQ  352 (874)
Q Consensus       273 ~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~  352 (874)
                      .|=.+...+=+.-.-      ....|+...|..-+++..+.+-.                       +...-        
T Consensus       148 ~~~~~l~v~ltrarl------ll~~~d~~aA~~~v~~ll~~~pr-----------------------~~~vl--------  190 (400)
T COG3071         148 AGDDTLAVELTRARL------LLNRRDYPAARENVDQLLEMTPR-----------------------HPEVL--------  190 (400)
T ss_pred             CCCchHHHHHHHHHH------HHhCCCchhHHHHHHHHHHhCcC-----------------------ChHHH--------
Confidence            111122223333333      55667777777666666554321                       11122        


Q ss_pred             CccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccH
Q 002846          353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE-------ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY  425 (874)
Q Consensus       353 ~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~-------~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tY  425 (874)
                         ......|.+.|++.....+...|.+.|+--|+       .+|+.+++-....+..+.-...++..... .+-+...-
T Consensus       191 ---rLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~  266 (400)
T COG3071         191 ---RLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELV  266 (400)
T ss_pred             ---HHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHH
Confidence               67788999999999999999999998876553       46777777777766666656666655433 33344455


Q ss_pred             HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH------------------------------HHHHHHHHHHHhcCCchH
Q 002846          426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPEE------------------------------PELEALLRVSVEAGKGDR  475 (874)
Q Consensus       426 n~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~------------------------------~ty~~LI~~~~~~G~~d~  475 (874)
                      .+++.-+.++|+.++|.++..+-.+++..|+.                              -.+.+|=..|.+++.+.+
T Consensus       267 ~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~k  346 (400)
T COG3071         267 VAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGK  346 (400)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHH
Confidence            56677777777777777777666555444432                              334555555667777777


Q ss_pred             HHHHHHHHHhcCCCCChhHHHHHHHHHh
Q 002846          476 VYYLLHKLRTSVRKVSPSTADVIAKWFN  503 (874)
Q Consensus       476 A~~ll~~M~~~~~~~sp~T~~~I~~~~~  503 (874)
                      |...|+.-.+.  .++.++|+.+-..+.
T Consensus       347 A~~~leaAl~~--~~s~~~~~~la~~~~  372 (400)
T COG3071         347 ASEALEAALKL--RPSASDYAELADALD  372 (400)
T ss_pred             HHHHHHHHHhc--CCChhhHHHHHHHHH
Confidence            77777766655  666667766554444

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.75  E-value=0.23  Score=54.20  Aligned_cols=260  Identities=11%  Similarity=-0.009  Sum_probs=171.0

Q ss_pred             CChhHHHHHHHHHhh---CCCCCCCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 002846          164 TNDSGQYKVRGITDE---KGSKKSKKDRSEQFQL-RVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA  239 (874)
Q Consensus       164 ~~~~~A~~vf~eM~~---~g~k~~~g~~Pd~~ty-n~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~  239 (874)
                      .++..|..+..+..+   .+.....+..-| .=| +-|=..|.+-|.+.+|...|..-...  .|-+.||-.|-++|.  
T Consensus       193 nDv~~aH~~~~~~~~~~~a~~s~~~~~~~d-wwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~--  267 (478)
T KOG1129|consen  193 NDVQKAHSLCQAVLEVERAKPSGSTGCTLD-WWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQ--  267 (478)
T ss_pred             hhHHHHHHHHHHHHHHHhccccccccchHh-HHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHH--
Confidence            444455544444322   222223333333 334 45556788999999999999887765  455678888888888  


Q ss_pred             ccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCe
Q 002846          240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG  319 (874)
Q Consensus       240 ~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~  319 (874)
                              +..+.+.|+.+|.       +-.+  .++-.|||-.=+.-     .+-..++.++|.+++.+..+..  |  
T Consensus       268 --------ridQP~~AL~~~~-------~gld--~fP~~VT~l~g~AR-----i~eam~~~~~a~~lYk~vlk~~--~--  321 (478)
T KOG1129|consen  268 --------RIDQPERALLVIG-------EGLD--SFPFDVTYLLGQAR-----IHEAMEQQEDALQLYKLVLKLH--P--  321 (478)
T ss_pred             --------HhccHHHHHHHHh-------hhhh--cCCchhhhhhhhHH-----HHHHHHhHHHHHHHHHHHHhcC--C--
Confidence                    7788889999985       2222  12234554222111     0333455666666666554431  1  


Q ss_pred             eeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 002846          320 HMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS  399 (874)
Q Consensus       320 ~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~  399 (874)
                                         -|+-..           .++-.+|.-.++.+-|+..+..+...|+. +...|+.+--+|.-
T Consensus       322 -------------------~nvEai-----------Acia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~y  370 (478)
T KOG1129|consen  322 -------------------INVEAI-----------ACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLY  370 (478)
T ss_pred             -------------------ccceee-----------eeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHh
Confidence                               122222           56667788889999999999999999965 55677777778888


Q ss_pred             cCChhHHHHHHHHHHHCCCCCCcc--cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHH
Q 002846          400 MGDGDMAFDMVKRMKSLGINPRLR--SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVY  477 (874)
Q Consensus       400 ~G~~d~A~~l~~~M~~~Gi~Pd~~--tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~  477 (874)
                      .+++|.++--|.+-...--.|+..  +|-.|=.-....||+..|.+.|.-...+. .-+...||-|--.-.+.|++++|.
T Consensus       371 aqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Ar  449 (478)
T KOG1129|consen  371 AQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGAR  449 (478)
T ss_pred             hcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHH
Confidence            999999999998877654445432  23224444456799999999998877654 234567777766678999999999


Q ss_pred             HHHHHHHhc
Q 002846          478 YLLHKLRTS  486 (874)
Q Consensus       478 ~ll~~M~~~  486 (874)
                      .+++.-.+.
T Consensus       450 sll~~A~s~  458 (478)
T KOG1129|consen  450 SLLNAAKSV  458 (478)
T ss_pred             HHHHHhhhh
Confidence            999887654

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=96.66  E-value=0.26  Score=58.43  Aligned_cols=270  Identities=10%  Similarity=0.015  Sum_probs=164.4

Q ss_pred             HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHH-Hc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 002846          159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCS-KR-----GDVMGAIRLYDKAQREGIKLGQYHYNVL  232 (874)
Q Consensus       159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~-k~-----G~~~~Al~lf~~M~~~Gi~pd~~tyn~L  232 (874)
                      .+.+.|+.++|..++..++..+        |+-..|-..+..+. -.     .+.+...++|+++...-  |-....-.+
T Consensus        47 ll~kLg~~~eA~~~y~~Li~rN--------Pdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl  116 (517)
T PF12569_consen   47 LLLKLGRKEEAEKIYRELIDRN--------PDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRL  116 (517)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhC--ccccchhHh
Confidence            5678899999999999996643        34366655554444 22     35778889999886432  322221111


Q ss_pred             HHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHH
Q 002846          233 LYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKEN  312 (874)
Q Consensus       233 L~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~  312 (874)
                      .=.+.          ....+......+-      +.+..+ ||+..+  +.|-.-      |......+-..+++.++..
T Consensus       117 ~L~~~----------~g~~F~~~~~~yl------~~~l~K-gvPslF--~~lk~L------y~d~~K~~~i~~l~~~~~~  171 (517)
T PF12569_consen  117 PLDFL----------EGDEFKERLDEYL------RPQLRK-GVPSLF--SNLKPL------YKDPEKAAIIESLVEEYVN  171 (517)
T ss_pred             hcccC----------CHHHHHHHHHHHH------HHHHhc-CCchHH--HHHHHH------HcChhHHHHHHHHHHHHHH
Confidence            11111          1112222222221      234444 776433  222222      5555556666666666654


Q ss_pred             cCCCCCeeeeccccHHHHHHhhhcC--CCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHH
Q 002846          313 LGQFSNGHMKLNSQLLDGRSNLERG--PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN-EAS  389 (874)
Q Consensus       313 ~Gi~Pd~~ty~~g~~~eA~~l~~~m--~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd-~~t  389 (874)
                      ..-.......  +.        ..-  .|....|   .      ...+-..|-..|+.++|+++.++-.+.  .|+ +-.
T Consensus       172 ~l~~~~~~~~--~~--------~~~~~~p~~~lw---~------~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~el  230 (517)
T PF12569_consen  172 SLESNGSFSN--GD--------DEEKEPPSTLLW---T------LYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVEL  230 (517)
T ss_pred             hhcccCCCCC--cc--------ccccCCchHHHH---H------HHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHH
Confidence            3211000000  00        000  2222222   0      033345577899999999999988876  355 668


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHH--------H
Q 002846          390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL--------E  461 (874)
Q Consensus       390 yn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty--------~  461 (874)
                      |.+-.+.+-+.|++++|.+.++.-+.... -|...-+-....+.++|++++|.+++......+..|-...+        .
T Consensus       231 y~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~  309 (517)
T PF12569_consen  231 YMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFET  309 (517)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHH
Confidence            88999999999999999999999887754 46677777889999999999999999999887764433222        2


Q ss_pred             HHHHHHHhcCCchHHHHHHHHHHh
Q 002846          462 ALLRVSVEAGKGDRVYYLLHKLRT  485 (874)
Q Consensus       462 ~LI~~~~~~G~~d~A~~ll~~M~~  485 (874)
                      ..-.+|.+.|++..|+..|+.+.+
T Consensus       310 e~a~a~~r~~~~~~ALk~~~~v~k  333 (517)
T PF12569_consen  310 ECAEAYLRQGDYGLALKRFHAVLK  333 (517)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHH
Confidence            334567788998888777666544

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.50  E-value=0.8  Score=52.27  Aligned_cols=219  Identities=13%  Similarity=0.051  Sum_probs=158.8

Q ss_pred             HHcCCHHHHHHHHHHHHHcC-CC-CCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchh
Q 002846          202 SKRGDVMGAIRLYDKAQREG-IK-LGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNG  279 (874)
Q Consensus       202 ~k~G~~~~Al~lf~~M~~~G-i~-pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~v  279 (874)
                      -...|+++|+.+|++..+.. .+ -|..+|+-+|..--.         ++.-.--|..++.         .++.   -.-
T Consensus       273 y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~---------~skLs~LA~~v~~---------idKy---R~E  331 (559)
T KOG1155|consen  273 YNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND---------KSKLSYLAQNVSN---------IDKY---RPE  331 (559)
T ss_pred             hhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh---------hHHHHHHHHHHHH---------hccC---Ccc
Confidence            34578999999999998763 22 356788888866552         1111112333332         1110   123


Q ss_pred             hhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHH
Q 002846          280 QLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRL  359 (874)
Q Consensus       280 tyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI  359 (874)
                      |+.++-+-      |+-.++.+.|...|..-.+..  |..                     ...|           +.|=
T Consensus       332 TCCiIaNY------YSlr~eHEKAv~YFkRALkLN--p~~---------------------~~aW-----------TLmG  371 (559)
T KOG1155|consen  332 TCCIIANY------YSLRSEHEKAVMYFKRALKLN--PKY---------------------LSAW-----------TLMG  371 (559)
T ss_pred             ceeeehhH------HHHHHhHHHHHHHHHHHHhcC--cch---------------------hHHH-----------HHhh
Confidence            34444444      677777888888888766653  111                     1223           5555


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CcccHHHHHHHHHhCCCh
Q 002846          360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDV  438 (874)
Q Consensus       360 ~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~P-d~~tYn~LI~a~~k~G~~  438 (874)
                      +.|....+...|.+-++.-.+-. +.|-..|=.|=.+|.-.+.+.-|+-.|++-...  +| |.+.|.+|=.+|.+.+++
T Consensus       372 HEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~  448 (559)
T KOG1155|consen  372 HEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRL  448 (559)
T ss_pred             HHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccH
Confidence            88888889999999998887654 568889999999999999999999999886654  45 689999999999999999


Q ss_pred             hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 002846          439 DKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT  485 (874)
Q Consensus       439 ~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~  485 (874)
                      ++|...|.....-|=. +...|..|-+.|-+-++..+|...|.+-.+
T Consensus       449 ~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~  494 (559)
T KOG1155|consen  449 EEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVE  494 (559)
T ss_pred             HHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            9999999998876533 567888999999999999999998877665

>PRK11189 lipoprotein NlpI; Provisional

Probab=96.49  E-value=0.56  Score=51.67  Aligned_cols=218  Identities=11%  Similarity=-0.047  Sum_probs=137.5

Q ss_pred             cCCHHHHHHHHHHHHHc-CCCCCH--HHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhh
Q 002846          204 RGDVMGAIRLYDKAQRE-GIKLGQ--YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQ  280 (874)
Q Consensus       204 ~G~~~~Al~lf~~M~~~-Gi~pd~--~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vt  280 (874)
                      .+..+.++.-+.++... .+.|+.  ..|..+=..+.          ..|+.++|...|.       +.... ...+...
T Consensus        39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~----------~~g~~~~A~~~~~-------~Al~l-~P~~~~a  100 (296)
T PRK11189         39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYD----------SLGLRALARNDFS-------QALAL-RPDMADA  100 (296)
T ss_pred             chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHH----------HCCCHHHHHHHHH-------HHHHc-CCCCHHH
Confidence            45567778888887743 233332  22333333344          6788889988885       33332 2225566


Q ss_pred             hHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHH
Q 002846          281 LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLS  360 (874)
Q Consensus       281 yn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~  360 (874)
                      |+.+-..      +...|++++|...|+...+.  .|+..                     ..|           .-+-.
T Consensus       101 ~~~lg~~------~~~~g~~~~A~~~~~~Al~l--~P~~~---------------------~a~-----------~~lg~  140 (296)
T PRK11189        101 YNYLGIY------LTQAGNFDAAYEAFDSVLEL--DPTYN---------------------YAY-----------LNRGI  140 (296)
T ss_pred             HHHHHHH------HHHCCCHHHHHHHHHHHHHh--CCCCH---------------------HHH-----------HHHHH
Confidence            8877777      88999999999999888764  33321                     112           44555


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhH
Q 002846          361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK  440 (874)
Q Consensus       361 ~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~  440 (874)
                      .+...|+.++|.+.|+......  |+..........+...++.++|...|.+.... ..|+...+ .+  .....|+..+
T Consensus       141 ~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~~~~~~~~-~~--~~~~lg~~~~  214 (296)
T PRK11189        141 ALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK-LDKEQWGW-NI--VEFYLGKISE  214 (296)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-CCccccHH-HH--HHHHccCCCH
Confidence            6678899999999999888753  54332233333345678899999999775533 23443222 22  2233566655


Q ss_pred             HHHHHHHHHHc---CC--CC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          441 ACSVEEHMLEH---GV--YP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       441 A~~l~~eM~~~---Gv--~P-d~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      + +.+..+.+.   .+  .| ....|..|-..+.+.|+.++|...|++..+.
T Consensus       215 ~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~  265 (296)
T PRK11189        215 E-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN  265 (296)
T ss_pred             H-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            4 355555432   11  11 2356888888899999999999999998876

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=96.43  E-value=0.049  Score=62.26  Aligned_cols=121  Identities=13%  Similarity=0.126  Sum_probs=96.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CcccHHHHHHHHHhCC
Q 002846          358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNG  436 (874)
Q Consensus       358 lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~P-d~~tYn~LI~a~~k~G  436 (874)
                      |+..+...++++.|.++|+++....  |+.  ...|++.+...++-.+|.+++++....  .| +......-...|.+.+
T Consensus       175 Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~  248 (395)
T PF09295_consen  175 LLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKK  248 (395)
T ss_pred             HHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcC
Confidence            3444555789999999999999885  664  445888888899999999999988855  23 3333333445577899


Q ss_pred             ChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          437 DVDKACSVEEHMLEHGVYPEEP-ELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       437 ~~~~A~~l~~eM~~~Gv~Pd~~-ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      +.+.|..+.+.+...  .|+.. +|..|..+|...|+++.|+..++.|.-.
T Consensus       249 ~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~  297 (395)
T PF09295_consen  249 KYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPML  297 (395)
T ss_pred             CHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence            999999999999884  47665 9999999999999999999999988754

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=96.41  E-value=1.2  Score=49.87  Aligned_cols=229  Identities=11%  Similarity=-0.028  Sum_probs=125.3

Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCC-ch
Q 002846          200 MCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NN  278 (874)
Q Consensus       200 a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~-d~  278 (874)
                      .+...|++++|..++++..+.. +-|...+.. ...+...+      ...+....+...+.       . ... ..+ ..
T Consensus        52 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~------~~~~~~~~~~~~l~-------~-~~~-~~~~~~  114 (355)
T cd05804          52 SAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLG------DFSGMRDHVARVLP-------L-WAP-ENPDYW  114 (355)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhc------ccccCchhHHHHHh-------c-cCc-CCCCcH
Confidence            4567889999999999887642 223333332 11111110      03455556666653       1 110 111 22


Q ss_pred             hhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCe-eeeccccHHHHHHhhhcCCCCcccccccccccCCccch
Q 002846          279 GQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG-HMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEI  357 (874)
Q Consensus       279 vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~-~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~  357 (874)
                      .....+-..      +...|++++|...+++.....  |+. ..+                                 ..
T Consensus       115 ~~~~~~a~~------~~~~G~~~~A~~~~~~al~~~--p~~~~~~---------------------------------~~  153 (355)
T cd05804         115 YLLGMLAFG------LEEAGQYDRAEEAARRALELN--PDDAWAV---------------------------------HA  153 (355)
T ss_pred             HHHHHHHHH------HHHcCCHHHHHHHHHHHHhhC--CCCcHHH---------------------------------HH
Confidence            223333334      678899999999999988764  444 334                                 55


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCcccH-H--HHHH
Q 002846          358 RLSEDAKKYAFQRGFEIYEKMCLDEV-PMNE--ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI-NPRLRSY-G--PALS  430 (874)
Q Consensus       358 lI~~~~k~g~~~~A~~lf~~M~~~Gv-~Pd~--~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi-~Pd~~tY-n--~LI~  430 (874)
                      +-..+...|++++|..++++.....- .|+.  ..|-.+...+...|+.++|..++++...... .+..... +  .++.
T Consensus       154 la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~  233 (355)
T cd05804         154 VAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLW  233 (355)
T ss_pred             HHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHH
Confidence            56677778888888888887665421 2333  3466777888888888888888888643321 1111111 1  2333


Q ss_pred             HHHhCCChhHHHHH--HHHHHHcCCCCCHHHH--HHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          431 VFCNNGDVDKACSV--EEHMLEHGVYPEEPEL--EALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       431 a~~k~G~~~~A~~l--~~eM~~~Gv~Pd~~ty--~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      -+-..|....+.+.  ...............+  .....++...|+.++|..++..+...
T Consensus       234 ~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~  293 (355)
T cd05804         234 RLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR  293 (355)
T ss_pred             HHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            33444544333333  2111111111111222  24555667778888888888887664

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.41  E-value=0.045  Score=60.20  Aligned_cols=126  Identities=15%  Similarity=0.109  Sum_probs=94.0

Q ss_pred             chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 002846          356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSV  431 (874)
Q Consensus       356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~----~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a  431 (874)
                      ...|..|.+.++++.|...++.|.+..   +..+.+-|..++..    ...+.+|+-+|++|... ..++..+.|.+..+
T Consensus       135 al~Vqi~L~~~R~dlA~k~l~~~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~  210 (290)
T PF04733_consen  135 ALAVQILLKMNRPDLAEKELKNMQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVC  210 (290)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHH
Confidence            567889999999999999999999764   33455555555543    34699999999998665 66788888888889


Q ss_pred             HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHhc
Q 002846          432 FCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG-DRVYYLLHKLRTS  486 (874)
Q Consensus       432 ~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~-d~A~~ll~~M~~~  486 (874)
                      +...|++++|.+++.+..... .-+..+...+|-.....|+. +.+.+++.+++..
T Consensus       211 ~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~  265 (290)
T PF04733_consen  211 HLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS  265 (290)
T ss_dssp             HHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence            999999999999999876543 23556666777777777887 6788899998876

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.39  E-value=0.19  Score=56.46  Aligned_cols=124  Identities=12%  Similarity=0.106  Sum_probs=96.5

Q ss_pred             chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHH-h
Q 002846          356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC-N  434 (874)
Q Consensus       356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~-k  434 (874)
                      +-|-+-|-+.|+-..|++.+-+-. +-++.|..|..-|..-|....-+++|+..|+...  =++|+..-|-.+|..|. +
T Consensus       596 skl~dlydqegdksqafq~~ydsy-ryfp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~kwqlmiasc~rr  672 (840)
T KOG2003|consen  596 SKLADLYDQEGDKSQAFQCHYDSY-RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMIASCFRR  672 (840)
T ss_pred             HHHHHHhhcccchhhhhhhhhhcc-cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHHHh
Confidence            556677778899999988775533 2456788899999999999999999999998754  36899999999997766 6


Q ss_pred             CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 002846          435 NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR  484 (874)
Q Consensus       435 ~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~  484 (874)
                      .|+..+|++++..... .+.-|.....-|++.+...|. .++.++-+++.
T Consensus       673 sgnyqka~d~yk~~hr-kfpedldclkflvri~~dlgl-~d~key~~kle  720 (840)
T KOG2003|consen  673 SGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLGL-KDAKEYADKLE  720 (840)
T ss_pred             cccHHHHHHHHHHHHH-hCccchHHHHHHHHHhccccc-hhHHHHHHHHH
Confidence            7999999999999765 466788888888888877774 34444444443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=96.35  E-value=0.68  Score=51.75  Aligned_cols=229  Identities=12%  Similarity=-0.008  Sum_probs=135.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhh
Q 002846          193 QLRVELDMCSKRGDVMGAIRLYDKAQREG-IKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD  271 (874)
Q Consensus       193 tyn~LI~a~~k~G~~~~Al~lf~~M~~~G-i~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~  271 (874)
                      .|..+-..+...|+.+.|...+....+.. -.++...-.. +.+....        ..|+.++|...+.       +..+
T Consensus         8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~a~~~~--------~~g~~~~A~~~~~-------~~l~   71 (355)
T cd05804           8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAH-VEALSAW--------IAGDLPKALALLE-------QLLD   71 (355)
T ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHH-HHHHHHH--------HcCCHHHHHHHHH-------HHHH
Confidence            44455555666677777766666655322 2234333322 2333211        5689999999884       4333


Q ss_pred             cCCCCchhhhHh---hhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccc
Q 002846          272 SRDMDNNGQLDY---GSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWS  348 (874)
Q Consensus       272 ~~gi~d~vtyn~---LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~  348 (874)
                      . .-.|...++.   ....      .-..+..+.+.+.+..  .....|+....                     .    
T Consensus        72 ~-~P~~~~a~~~~~~~~~~------~~~~~~~~~~~~~l~~--~~~~~~~~~~~---------------------~----  117 (355)
T cd05804          72 D-YPRDLLALKLHLGAFGL------GDFSGMRDHVARVLPL--WAPENPDYWYL---------------------L----  117 (355)
T ss_pred             H-CCCcHHHHHHhHHHHHh------cccccCchhHHHHHhc--cCcCCCCcHHH---------------------H----
Confidence            2 2224444442   1111      1224555666665554  22223332211                     0    


Q ss_pred             cccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCc--ccH
Q 002846          349 IDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI-NPRL--RSY  425 (874)
Q Consensus       349 i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi-~Pd~--~tY  425 (874)
                             ..+-..+...|++++|...+++..... +.+...+..+-..+...|++++|..++++.....- .|+.  ..|
T Consensus       118 -------~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~  189 (355)
T cd05804         118 -------GMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNW  189 (355)
T ss_pred             -------HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHH
Confidence                   233456778999999999999998865 44567889999999999999999999998776421 2333  235


Q ss_pred             HHHHHHHHhCCChhHHHHHHHHHHHcCC-CCCHHHH-H--HHHHHHHhcCCchHHHHH
Q 002846          426 GPALSVFCNNGDVDKACSVEEHMLEHGV-YPEEPEL-E--ALLRVSVEAGKGDRVYYL  479 (874)
Q Consensus       426 n~LI~a~~k~G~~~~A~~l~~eM~~~Gv-~Pd~~ty-~--~LI~~~~~~G~~d~A~~l  479 (874)
                      ..+-..+...|+.++|..++++...... .+..... +  .++.-+-..|..+.+.++
T Consensus       190 ~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w  247 (355)
T cd05804         190 WHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW  247 (355)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH
Confidence            5677888999999999999999864332 2222222 2  334444455544444433

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=96.32  E-value=0.017  Score=59.76  Aligned_cols=95  Identities=14%  Similarity=0.055  Sum_probs=76.7

Q ss_pred             chHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------------CChhHHHHHHHHHH
Q 002846          356 EIRLSEDAK-----KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM----------------GDGDMAFDMVKRMK  414 (874)
Q Consensus       356 n~lI~~~~k-----~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~----------------G~~d~A~~l~~~M~  414 (874)
                      ..+|+.|.+     .|.++-...-+..|.+-|+.-|..+|+.||+.+=+.                .+.+-|++++++|.
T Consensus        51 ~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME  130 (228)
T PF06239_consen   51 LEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQME  130 (228)
T ss_pred             HHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHH
Confidence            666666664     478888889999999999999999999999998652                24567999999999


Q ss_pred             HCCCCCCcccHHHHHHHHHhCCCh-hHHHHHHHHHHH
Q 002846          415 SLGINPRLRSYGPALSVFCNNGDV-DKACSVEEHMLE  450 (874)
Q Consensus       415 ~~Gi~Pd~~tYn~LI~a~~k~G~~-~~A~~l~~eM~~  450 (874)
                      ..|+.||..|+..||..|.+.+.. .+..++.--|.+
T Consensus       131 ~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk  167 (228)
T PF06239_consen  131 NNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK  167 (228)
T ss_pred             HcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence            999999999999999999887743 444445444443

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.31  E-value=0.026  Score=62.04  Aligned_cols=201  Identities=11%  Similarity=0.061  Sum_probs=123.4

Q ss_pred             CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCc
Q 002846          188 RSEQFQLRVELDMCSKR-GDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNS  266 (874)
Q Consensus       188 ~Pd~~tyn~LI~a~~k~-G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s  266 (874)
                      .|....... +..|... .+-+.++.-+.+.......++..++ .++.|..-        ...|++++|+.++.      
T Consensus        63 ~~~l~av~~-la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~-~~~~A~i~--------~~~~~~~~AL~~l~------  126 (290)
T PF04733_consen   63 SPELQAVRL-LAEYLSSPSDKESALEELKELLADQAGESNEIV-QLLAATIL--------FHEGDYEEALKLLH------  126 (290)
T ss_dssp             SCCCHHHHH-HHHHHCTSTTHHCHHHHHHHCCCTS---CHHHH-HHHHHHHH--------CCCCHHHHHHCCCT------
T ss_pred             ChhHHHHHH-HHHHHhCccchHHHHHHHHHHHHhccccccHHH-HHHHHHHH--------HHcCCHHHHHHHHH------
Confidence            455455544 4444444 4445555555444333333222233 34444431        26799999998885      


Q ss_pred             hhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccc
Q 002846          267 TELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKD  346 (874)
Q Consensus       267 ~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~  346 (874)
                             ...+.-.....|..      +.+.++++.|.+.+..|.+..  .|..-.   +                    
T Consensus       127 -------~~~~lE~~al~Vqi------~L~~~R~dlA~k~l~~~~~~~--eD~~l~---q--------------------  168 (290)
T PF04733_consen  127 -------KGGSLELLALAVQI------LLKMNRPDLAEKELKNMQQID--EDSILT---Q--------------------  168 (290)
T ss_dssp             -------TTTCHHHHHHHHHH------HHHTT-HHHHHHHHHHHHCCS--CCHHHH---H--------------------
T ss_pred             -------ccCcccHHHHHHHH------HHHcCCHHHHHHHHHHHHhcC--CcHHHH---H--------------------
Confidence                   12233334455666      889999999999999998753  222211   0                    


Q ss_pred             cccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHH
Q 002846          347 WSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG  426 (874)
Q Consensus       347 w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn  426 (874)
                             -..++|+...-...+.+|+.+|++|.+. ..++..+.|.+..++...|++++|.+++.+.....- -+..+..
T Consensus       169 -------La~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~La  239 (290)
T PF04733_consen  169 -------LAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLA  239 (290)
T ss_dssp             -------HHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHH
T ss_pred             -------HHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHH
Confidence                   0134444443345799999999998765 568899999999999999999999999998654321 1234455


Q ss_pred             HHHHHHHhCCCh-hHHHHHHHHHHHc
Q 002846          427 PALSVFCNNGDV-DKACSVEEHMLEH  451 (874)
Q Consensus       427 ~LI~a~~k~G~~-~~A~~l~~eM~~~  451 (874)
                      .+|......|+. +.+.+.+.++...
T Consensus       240 Nliv~~~~~gk~~~~~~~~l~qL~~~  265 (290)
T PF04733_consen  240 NLIVCSLHLGKPTEAAERYLSQLKQS  265 (290)
T ss_dssp             HHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred             HHHHHHHHhCCChhHHHHHHHHHHHh
Confidence            567766777777 6788888888764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=96.01  E-value=1.2  Score=54.62  Aligned_cols=252  Identities=10%  Similarity=0.041  Sum_probs=156.0

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCC-c
Q 002846          199 DMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-N  277 (874)
Q Consensus       199 ~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~-d  277 (874)
                      ..+++ |++++|..++.+.++.. +.+...|-+|=..|-          ..|+.+++...+-         ....-.+ |
T Consensus       148 ~lfar-g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyE----------qrGd~eK~l~~~l---------lAAHL~p~d  206 (895)
T KOG2076|consen  148 NLFAR-GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYE----------QRGDIEKALNFWL---------LAAHLNPKD  206 (895)
T ss_pred             HHHHh-CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHH----------HcccHHHHHHHHH---------HHHhcCCCC
Confidence            34555 99999999999998653 345567777777776          6688888887763         1111111 3


Q ss_pred             hhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeec---------cccHHHHHHhhhcC---CC-Ccccc
Q 002846          278 NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL---------NSQLLDGRSNLERG---PD-DQSRK  344 (874)
Q Consensus       278 ~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~---------~g~~~eA~~l~~~m---~p-d~~ty  344 (874)
                      .--|-.+-.-      ..+.|.++.|.-.|.+-...  .|..+-|-         .|....|+.-|.++   .| +.+-+
T Consensus       207 ~e~W~~ladl------s~~~~~i~qA~~cy~rAI~~--~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er  278 (895)
T KOG2076|consen  207 YELWKRLADL------SEQLGNINQARYCYSRAIQA--NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIER  278 (895)
T ss_pred             hHHHHHHHHH------HHhcccHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHH
Confidence            3345555444      66677777777777776655  34444333         56667777766666   33 11111


Q ss_pred             cccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-------
Q 002846          345 KDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD-EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL-------  416 (874)
Q Consensus       345 ~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~-Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~-------  416 (874)
                         .   +...-.++..+-..++-+.|.+.++.-... +=.-+.-.+++++..|.+....+.|......+...       
T Consensus       279 ---~---~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~  352 (895)
T KOG2076|consen  279 ---I---EDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDS  352 (895)
T ss_pred             ---H---HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChh
Confidence               0   000022355666666668888888766652 22345567788888888888888888888777661       


Q ss_pred             --------------------CCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCch
Q 002846          417 --------------------GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVY--PEEPELEALLRVSVEAGKGD  474 (874)
Q Consensus       417 --------------------Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~--Pd~~ty~~LI~~~~~~G~~d  474 (874)
                                          ++.+++.++ -+.-++......+....+..-+.+..+.  -+...|--+-++|.+.|+++
T Consensus       353 e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~  431 (895)
T KOG2076|consen  353 EWDTDERRREEPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYK  431 (895)
T ss_pred             hhhhhhhccccccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHH
Confidence                                122333331 1233344444555555555555555533  35566777788888888888


Q ss_pred             HHHHHHHHHHhc
Q 002846          475 RVYYLLHKLRTS  486 (874)
Q Consensus       475 ~A~~ll~~M~~~  486 (874)
                      +|+.+|..+...
T Consensus       432 ~Al~~l~~i~~~  443 (895)
T KOG2076|consen  432 EALRLLSPITNR  443 (895)
T ss_pred             HHHHHHHHHhcC
Confidence            888888888876

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=95.98  E-value=0.63  Score=55.13  Aligned_cols=239  Identities=12%  Similarity=0.032  Sum_probs=156.5

Q ss_pred             hcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Q 002846          162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDV-MGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAA  240 (874)
Q Consensus       162 k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~-~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~  240 (874)
                      +..+.++|.++|+........+    .-+...|.+++--+-+.-.+ --|..+.+.+     +-.+.+|-++=++|+   
T Consensus       365 El~~Y~~a~~~F~~~r~~~p~r----v~~meiyST~LWHLq~~v~Ls~Laq~Li~~~-----~~sPesWca~GNcfS---  432 (638)
T KOG1126|consen  365 ELIEYDQAERIFSLVRRIEPYR----VKGMEIYSTTLWHLQDEVALSYLAQDLIDTD-----PNSPESWCALGNCFS---  432 (638)
T ss_pred             HHHHHHHHHHHHHHHHhhcccc----ccchhHHHHHHHHHHhhHHHHHHHHHHHhhC-----CCCcHHHHHhcchhh---
Confidence            3456778999999984422111    12346788877555433221 1233343333     234578888888888   


Q ss_pred             cCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCee
Q 002846          241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH  320 (874)
Q Consensus       241 ~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~  320 (874)
                             -.++-+.|+..|.      +..    -+.+.++|..-+-|    .++.....+|.|..-|+.-    +..|..
T Consensus       433 -------LQkdh~~Aik~f~------RAi----Qldp~faYayTLlG----hE~~~~ee~d~a~~~fr~A----l~~~~r  487 (638)
T KOG1126|consen  433 -------LQKDHDTAIKCFK------RAI----QLDPRFAYAYTLLG----HESIATEEFDKAMKSFRKA----LGVDPR  487 (638)
T ss_pred             -------hhhHHHHHHHHHH------Hhh----ccCCccchhhhhcC----ChhhhhHHHHhHHHHHHhh----hcCCch
Confidence                   6677888888885      211    22233444443334    4477778888888888743    445666


Q ss_pred             eec-----------cccHHHHHHhhhcC---CCC-cccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 002846          321 MKL-----------NSQLLDGRSNLERG---PDD-QSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPM  385 (874)
Q Consensus       321 ty~-----------~g~~~eA~~l~~~m---~pd-~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~P  385 (874)
                      -|+           .++.+.|+..|...   .|. .+..           ..+-..+-+.|+.++|+++|++-....- -
T Consensus       488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~-----------~~~g~~~~~~k~~d~AL~~~~~A~~ld~-k  555 (638)
T KOG1126|consen  488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVIL-----------CHIGRIQHQLKRKDKALQLYEKAIHLDP-K  555 (638)
T ss_pred             hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHH-----------hhhhHHHHHhhhhhHHHHHHHHHHhcCC-C
Confidence            676           67888888888876   332 2222           3333555678999999999998776542 2


Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 002846          386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEH  451 (874)
Q Consensus       386 d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd-~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~  451 (874)
                      |..+-=-.+..+...++.++|+..|+++++.  .|+ ...|-.+-..|-+.|+.+.|..-|.-|.+.
T Consensus       556 n~l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l  620 (638)
T KOG1126|consen  556 NPLCKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL  620 (638)
T ss_pred             CchhHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence            4444444566777889999999999999875  566 455666667888899999999888877664

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=95.93  E-value=1.5  Score=46.12  Aligned_cols=206  Identities=14%  Similarity=0.001  Sum_probs=124.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhc
Q 002846          194 LRVELDMCSKRGDVMGAIRLYDKAQREGIKLG-QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS  272 (874)
Q Consensus       194 yn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd-~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~  272 (874)
                      ..-|=-+|...|+...|..-+++..+..  |+ ..+|.++-..|-          +.|..+.|.+.|.      .-|...
T Consensus        38 rlqLal~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq----------~~Ge~~~A~e~Yr------kAlsl~   99 (250)
T COG3063          38 RLQLALGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQ----------KLGENDLADESYR------KALSLA   99 (250)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHH----------HcCChhhHHHHHH------HHHhcC
Confidence            3344458999999999999999998753  44 446666666666          7788888888885      223222


Q ss_pred             CCCCchhh-hHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCccccccccccc
Q 002846          273 RDMDNNGQ-LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDN  351 (874)
Q Consensus       273 ~gi~d~vt-yn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~  351 (874)
                      .+-.|+.- |.+.         +|..|++++|...|++-...-   +...-                  ..||       
T Consensus       100 p~~GdVLNNYG~F---------LC~qg~~~eA~q~F~~Al~~P---~Y~~~------------------s~t~-------  142 (250)
T COG3063         100 PNNGDVLNNYGAF---------LCAQGRPEEAMQQFERALADP---AYGEP------------------SDTL-------  142 (250)
T ss_pred             CCccchhhhhhHH---------HHhCCChHHHHHHHHHHHhCC---CCCCc------------------chhh-------
Confidence            11113332 5444         788888888888888766541   11100                  0011       


Q ss_pred             CCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 002846          352 QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV  431 (874)
Q Consensus       352 ~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a  431 (874)
                          .-+.-+..+.|+.+.|.+.|++-.+..- -...+.-.+.+...+.|+.-.|...++.....+. +...+.-..|..
T Consensus       143 ----eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iri  216 (250)
T COG3063         143 ----ENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRI  216 (250)
T ss_pred             ----hhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHH
Confidence                2222233366777777777776665431 1234556666777777777777777776665544 666666656666


Q ss_pred             HHhCCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 002846          432 FCNNGDVDKACSVEEHMLEHGVYPEEPELEA  462 (874)
Q Consensus       432 ~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~  462 (874)
                      --+.|+.+.|.+.=..+...  -|....|..
T Consensus       217 ak~~gd~~~a~~Y~~qL~r~--fP~s~e~q~  245 (250)
T COG3063         217 AKRLGDRAAAQRYQAQLQRL--FPYSEEYQT  245 (250)
T ss_pred             HHHhccHHHHHHHHHHHHHh--CCCcHHHHh
Confidence            66667776666655555442  254444443

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=95.90  E-value=0.74  Score=56.69  Aligned_cols=299  Identities=14%  Similarity=0.084  Sum_probs=188.5

Q ss_pred             HHHhcCChhHHHHHHHHH----hhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCHH----
Q 002846          159 KMEQRTNDSGQYKVRGIT----DEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQRE---GIKLGQY----  227 (874)
Q Consensus       159 ~~~k~~~~~~A~~vf~eM----~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~---Gi~pd~~----  227 (874)
                      .+-..++...++.+|...    ...+.     . +-....|.+=..+...|++..|...|+.....   -..+|..    
T Consensus       422 ql~e~~d~~~sL~~~~~A~d~L~~~~~-----~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~  495 (1018)
T KOG2002|consen  422 QLLEQTDPWASLDAYGNALDILESKGK-----Q-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTN  495 (1018)
T ss_pred             HHHHhcChHHHHHHHHHHHHHHHHcCC-----C-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccch
Confidence            444455555556555543    22221     1 33367888888889999999999999998744   2334442    


Q ss_pred             ---HHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhc-------
Q 002846          228 ---HYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSS-------  297 (874)
Q Consensus       228 ---tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~-------  297 (874)
                         -||  |..|..         ..++.+.|...+.       ++...        |-.-|++      |.+.       
T Consensus       496 lt~~YN--larl~E---------~l~~~~~A~e~Yk-------~Ilke--------hp~YId~------ylRl~~ma~~k  543 (1018)
T KOG2002|consen  496 LTLKYN--LARLLE---------ELHDTEVAEEMYK-------SILKE--------HPGYIDA------YLRLGCMARDK  543 (1018)
T ss_pred             hHHHHH--HHHHHH---------hhhhhhHHHHHHH-------HHHHH--------CchhHHH------HHHhhHHHHhc
Confidence               333  333332         3356667777774       22221        2222333      3333       


Q ss_pred             CChHHHHHHHHHHHH-cCCCCCeeeec------cccHHHHHHhhhcC--CCCcc--cccccccccCCccchHHHHHH---
Q 002846          298 YRFDDLDSTFNEKEN-LGQFSNGHMKL------NSQLLDGRSNLERG--PDDQS--RKKDWSIDNQDADEIRLSEDA---  363 (874)
Q Consensus       298 g~~e~A~~lf~eM~~-~Gi~Pd~~ty~------~g~~~eA~~l~~~m--~pd~~--ty~~w~i~~~~~~n~lI~~~~---  363 (874)
                      +.+.+|..++.+... ..-.|++.+|-      ...+.-|..-|...  .++..  +|   ++.  ...|..|..+.   
T Consensus       544 ~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Y---sli--aLGN~~~~~l~~~~  618 (1018)
T KOG2002|consen  544 NNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAY---SLI--ALGNVYIQALHNPS  618 (1018)
T ss_pred             cCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchh---HHH--HhhHHHHHHhcccc
Confidence            455677777766544 34667777773      22233333322222  22221  22   111  11134444433   


Q ss_pred             -----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCCh
Q 002846          364 -----KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDV  438 (874)
Q Consensus       364 -----k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~  438 (874)
                           ..+..++|+++|.+..... +-|...-|-+--.++..|++.+|.++|.+..+... -..-+|-.+-+.|...|++
T Consensus       619 rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy  696 (1018)
T KOG2002|consen  619 RNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQY  696 (1018)
T ss_pred             cChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHH
Confidence                 2346788999999877654 45777778888889999999999999999988754 3445677788999999999


Q ss_pred             hHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCChh--HHHHHHHHHhc
Q 002846          439 DKACSVEEHMLE-HGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADVIAKWFNS  504 (874)
Q Consensus       439 ~~A~~l~~eM~~-~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~--T~~~I~~~~~s  504 (874)
                      ..|.++|+.-.+ .+-.-+......|-+++-++|.+.+|.+.+..-+..  .|+..  -+++..-.++.
T Consensus       697 ~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~--~p~~~~v~FN~a~v~kkl  763 (1018)
T KOG2002|consen  697 RLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL--APSNTSVKFNLALVLKKL  763 (1018)
T ss_pred             HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CCccchHHhHHHHHHHHH
Confidence            999999987554 455567888899999999999999999998877765  55444  35554444443

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=95.89  E-value=0.36  Score=50.76  Aligned_cols=160  Identities=12%  Similarity=0.016  Sum_probs=108.9

Q ss_pred             hhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHH
Q 002846          294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE  373 (874)
Q Consensus       294 ~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~  373 (874)
                      +-..|++++|...|++.....  |+....     .+             .+           ..+-..+.+.|++++|..
T Consensus        43 ~~~~~~~~~A~~~~~~~~~~~--p~~~~~-----~~-------------a~-----------~~la~~~~~~~~~~~A~~   91 (235)
T TIGR03302        43 ALDSGDYTEAIKYFEALESRY--PFSPYA-----EQ-------------AQ-----------LDLAYAYYKSGDYAEAIA   91 (235)
T ss_pred             HHHcCCHHHHHHHHHHHHHhC--CCchhH-----HH-------------HH-----------HHHHHHHHhcCCHHHHHH
Confidence            678899999999999886652  322110     00             11           344567778899999999


Q ss_pred             HHHHHHHCCCCCCHH--HHHHHHHHHHhc--------CChhHHHHHHHHHHHCCCCCCccc-HH----------------
Q 002846          374 IYEKMCLDEVPMNEA--SLTAVGRMAMSM--------GDGDMAFDMVKRMKSLGINPRLRS-YG----------------  426 (874)
Q Consensus       374 lf~~M~~~Gv~Pd~~--tyn~LI~~~~~~--------G~~d~A~~l~~~M~~~Gi~Pd~~t-Yn----------------  426 (874)
                      .|+++.+..-.....  ++..+-.++...        |+.++|.+.|+.+...  .|+..- +.                
T Consensus        92 ~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~  169 (235)
T TIGR03302        92 AADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKE  169 (235)
T ss_pred             HHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHH
Confidence            999998753211121  343344444443        7788999999988765  344321 11                


Q ss_pred             -HHHHHHHhCCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          427 -PALSVFCNNGDVDKACSVEEHMLEHG--VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       427 -~LI~a~~k~G~~~~A~~l~~eM~~~G--v~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                       .+-..|.+.|+.++|...++......  -......+..+..++...|+.++|..+++.+..+
T Consensus       170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence             23345678899999999999987753  1223567888999999999999999999988776

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK11189 lipoprotein NlpI; Provisional

Probab=95.89  E-value=1.1  Score=49.27  Aligned_cols=228  Identities=11%  Similarity=-0.033  Sum_probs=143.3

Q ss_pred             ChhHHHHHHHHHhhCCCCCCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccC
Q 002846          165 NDSGQYKVRGITDEKGSKKSKKDRSE--QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVG  242 (874)
Q Consensus       165 ~~~~A~~vf~eM~~~g~k~~~g~~Pd--~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~  242 (874)
                      ..+.+..-+.++.....     ..|+  ...|..+=..|.+.|+.++|+..|.+..+.. +-+...|+.+=..+.     
T Consensus        41 ~~e~~i~~~~~~l~~~~-----~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~-----  109 (296)
T PRK11189         41 QQEVILARLNQILASRD-----LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLT-----  109 (296)
T ss_pred             HHHHHHHHHHHHHcccc-----CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH-----
Confidence            44556666666643221     1222  2345555567889999999999999998753 234677777777777     


Q ss_pred             CCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeee
Q 002846          243 VVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMK  322 (874)
Q Consensus       243 ~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty  322 (874)
                           ..|+.++|...|+       ...+. .-.+...|..+-..      +...|++++|.+.|+.-....  |+....
T Consensus       110 -----~~g~~~~A~~~~~-------~Al~l-~P~~~~a~~~lg~~------l~~~g~~~eA~~~~~~al~~~--P~~~~~  168 (296)
T PRK11189        110 -----QAGNFDAAYEAFD-------SVLEL-DPTYNYAYLNRGIA------LYYGGRYELAQDDLLAFYQDD--PNDPYR  168 (296)
T ss_pred             -----HCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHhC--CCCHHH
Confidence                 7899999999996       33221 22245566666666      778899999999999877652  322101


Q ss_pred             ccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 002846          323 LNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD  402 (874)
Q Consensus       323 ~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~  402 (874)
                                                       ......+...++.++|.+.|++..... .|+... ..+.  ....|+
T Consensus       169 ---------------------------------~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~-~~~~--~~~lg~  211 (296)
T PRK11189        169 ---------------------------------ALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWG-WNIV--EFYLGK  211 (296)
T ss_pred             ---------------------------------HHHHHHHHccCCHHHHHHHHHHHHhhC-CccccH-HHHH--HHHccC
Confidence                                             222222345678999999997755332 333222 2222  233566


Q ss_pred             hhHHHHHHHHHHHCC-C----CC-CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 002846          403 GDMAFDMVKRMKSLG-I----NP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL  463 (874)
Q Consensus       403 ~d~A~~l~~~M~~~G-i----~P-d~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~L  463 (874)
                      ..++ +.+..+.+.- .    .| ....|..+=..+.+.|+.++|...|+...+.+ .||-+.+...
T Consensus       212 ~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~~~  276 (296)
T PRK11189        212 ISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEHRYA  276 (296)
T ss_pred             CCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHHHHH
Confidence            6554 3555554321 1    11 12467778888999999999999999988755 3465555543

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=95.69  E-value=6.7  Score=46.85  Aligned_cols=200  Identities=14%  Similarity=0.049  Sum_probs=117.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhh
Q 002846          192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD  271 (874)
Q Consensus       192 ~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~  271 (874)
                      +.|-.....+-.+||+..|..++...-+..-. +...|-+-+..-.          ....+++|..+|.       ..+.
T Consensus       585 ~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~----------en~e~eraR~lla-------kar~  646 (913)
T KOG0495|consen  585 ILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEF----------ENDELERARDLLA-------KARS  646 (913)
T ss_pred             hHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhh----------ccccHHHHHHHHH-------HHhc
Confidence            45555556666777888887777777654321 4455555555555          5677788888874       2222


Q ss_pred             cCCCCchhh-hHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeec--ccc-------HHHHHHhhhcC---C
Q 002846          272 SRDMDNNGQ-LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL--NSQ-------LLDGRSNLERG---P  338 (874)
Q Consensus       272 ~~gi~d~vt-yn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~--~g~-------~~eA~~l~~~m---~  338 (874)
                      ..|-.-+.+ +-.+         .--.+.+++|.+++++-.+.  .|+..-+-  .|+       ++.|..-+...   .
T Consensus       647 ~sgTeRv~mKs~~~---------er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c  715 (913)
T KOG0495|consen  647 ISGTERVWMKSANL---------ERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC  715 (913)
T ss_pred             cCCcchhhHHHhHH---------HHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC
Confidence            212222222 2222         12246678888888766553  34433221  333       33344443333   5


Q ss_pred             CCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 002846          339 DDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI  418 (874)
Q Consensus       339 pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi  418 (874)
                      |+.+-.  |        -++..---+.|.+-+|..+|+.-+.++ +-|...|-..|++=.+.|+.+.|..++.+..+. +
T Consensus       716 P~~ipL--W--------llLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-c  783 (913)
T KOG0495|consen  716 PNSIPL--W--------LLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-C  783 (913)
T ss_pred             CCCchH--H--------HHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-C
Confidence            655433  1        334444456778999999999888776 457889999999999999999999888766544 3


Q ss_pred             CCCcccHHHHHHHH
Q 002846          419 NPRLRSYGPALSVF  432 (874)
Q Consensus       419 ~Pd~~tYn~LI~a~  432 (874)
                      +-+-.-|.-.|...
T Consensus       784 p~sg~LWaEaI~le  797 (913)
T KOG0495|consen  784 PSSGLLWAEAIWLE  797 (913)
T ss_pred             CccchhHHHHHHhc
Confidence            22333344333333

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=95.54  E-value=0.33  Score=46.13  Aligned_cols=99  Identities=8%  Similarity=-0.039  Sum_probs=74.8

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 002846          386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR  465 (874)
Q Consensus       386 d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~  465 (874)
                      +......+...+...|+.++|...|+.....+ ..+...|..+-..|.+.|+.++|..+++.....+ ..+...+..+-.
T Consensus        16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~   93 (135)
T TIGR02552        16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAE   93 (135)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence            33456667777888899999999998887653 2355666667777788899999999888877654 335566666777


Q ss_pred             HHHhcCCchHHHHHHHHHHhc
Q 002846          466 VSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       466 ~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      .+...|+.++|...|+...+.
T Consensus        94 ~~~~~g~~~~A~~~~~~al~~  114 (135)
T TIGR02552        94 CLLALGEPESALKALDLAIEI  114 (135)
T ss_pred             HHHHcCCHHHHHHHHHHHHHh
Confidence            788889999999999888776

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=95.50  E-value=0.38  Score=57.50  Aligned_cols=84  Identities=10%  Similarity=0.119  Sum_probs=46.5

Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHH
Q 002846          364 KKYAFQRGFEIYEKMCLDEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKAC  442 (874)
Q Consensus       364 k~g~~~~A~~lf~~M~~~Gv~Pd-~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~  442 (874)
                      +.++++.|.+-|..-..-  .|| ...||.+-.+|.+.++-.+|+..+.+-.+.+ .-+...|-.-+.-..+.|.+++|.
T Consensus       531 qlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~  607 (777)
T KOG1128|consen  531 QLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAI  607 (777)
T ss_pred             HHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHH
Confidence            445555666655544421  333 3456666666666666666666666665554 334444444455555666666666


Q ss_pred             HHHHHHHH
Q 002846          443 SVEEHMLE  450 (874)
Q Consensus       443 ~l~~eM~~  450 (874)
                      +.+..|..
T Consensus       608 ~A~~rll~  615 (777)
T KOG1128|consen  608 KAYHRLLD  615 (777)
T ss_pred             HHHHHHHH
Confidence            66655543

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=95.47  E-value=1.2  Score=46.73  Aligned_cols=60  Identities=13%  Similarity=0.066  Sum_probs=48.1

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHCCC-CC-CcccHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 002846          392 AVGRMAMSMGDGDMAFDMVKRMKSLGI-NP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEH  451 (874)
Q Consensus       392 ~LI~~~~~~G~~d~A~~l~~~M~~~Gi-~P-d~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~  451 (874)
                      .+...+.+.|++++|...+++.....- .| ....+..+..++.+.|+.++|..+++.+...
T Consensus       171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            456678899999999999999876521 12 2457778999999999999999999988764

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=95.43  E-value=0.16  Score=42.77  Aligned_cols=90  Identities=18%  Similarity=0.163  Sum_probs=39.3

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 002846          393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK  472 (874)
Q Consensus       393 LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~  472 (874)
                      +...+...|++++|..++++..+.. ..+...+..+-..+...|+.++|.+.++...... ..+...+..+...+...|+
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   83 (100)
T cd00189           6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK   83 (100)
T ss_pred             HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence            3344444455555555554444331 1111333334444444455555555554444332 1122344444445555555


Q ss_pred             chHHHHHHHHHH
Q 002846          473 GDRVYYLLHKLR  484 (874)
Q Consensus       473 ~d~A~~ll~~M~  484 (874)
                      .++|...+....
T Consensus        84 ~~~a~~~~~~~~   95 (100)
T cd00189          84 YEEALEAYEKAL   95 (100)
T ss_pred             HHHHHHHHHHHH
Confidence            555555554443

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=95.41  E-value=2.4  Score=52.38  Aligned_cols=288  Identities=10%  Similarity=-0.006  Sum_probs=166.6

Q ss_pred             hcCChhHHHHHHHHHhhC---CCCCCCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 002846          162 QRTNDSGQYKVRGITDEK---GSKKSKKDRSEQFQLRVELDMCSK-RGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCS  237 (874)
Q Consensus       162 k~~~~~~A~~vf~eM~~~---g~k~~~g~~Pd~~tyn~LI~a~~k-~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~  237 (874)
                      ..+.++.|...|+.-...   -..++.|-.++ +|..-.+..|.. .++.+.|.++|....+..  |+-++.-.=+-+.+
T Consensus       464 ~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~-lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma  540 (1018)
T KOG2002|consen  464 RLGNIEKALEHFKSALGKLLEVANKDEGKSTN-LTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMA  540 (1018)
T ss_pred             HhcChHHHHHHHHHHhhhhhhhcCccccccch-hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHH
Confidence            567888999999887443   12233332344 333334444443 468999999999988642  33222111111122


Q ss_pred             hcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCC-C
Q 002846          238 SAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQ-F  316 (874)
Q Consensus       238 ~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi-~  316 (874)
                      +         ..+...+|...+.      +-+......+++.+  -+=+.      +-+...+..|..-|......-. .
T Consensus       541 ~---------~k~~~~ea~~~lk------~~l~~d~~np~ars--l~G~~------~l~k~~~~~a~k~f~~i~~~~~~~  597 (1018)
T KOG2002|consen  541 R---------DKNNLYEASLLLK------DALNIDSSNPNARS--LLGNL------HLKKSEWKPAKKKFETILKKTSTK  597 (1018)
T ss_pred             H---------hccCcHHHHHHHH------HHHhcccCCcHHHH--HHHHH------HHhhhhhcccccHHHHHHhhhccC
Confidence            1         2355666666664      11111101112222  11112      3334444444443333322211 1


Q ss_pred             CCeeeec--------------------cccHHHHHHhhhcC----CCCcccccccccccCCccchHHHHHHhcCCHHHHH
Q 002846          317 SNGHMKL--------------------NSQLLDGRSNLERG----PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGF  372 (874)
Q Consensus       317 Pd~~ty~--------------------~g~~~eA~~l~~~m----~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~  372 (874)
                      +|.++.-                    .+..++|+.+|...    ..|...-           |-+=-.++.+|++.+|.
T Consensus       598 ~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAA-----------NGIgiVLA~kg~~~~A~  666 (1018)
T KOG2002|consen  598 TDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAA-----------NGIGIVLAEKGRFSEAR  666 (1018)
T ss_pred             CchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhc-----------cchhhhhhhccCchHHH
Confidence            2222211                    34567777777765    2233322           44444577899999999


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 002846          373 EIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL-GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH  451 (874)
Q Consensus       373 ~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~-Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~  451 (874)
                      +||.+.++... -+..+|-.|..+|...|++-.|.++|+...+. .-.-+..+.+.|-.++-++|.+.+|.+..-.....
T Consensus       667 dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~  745 (1018)
T KOG2002|consen  667 DIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL  745 (1018)
T ss_pred             HHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            99999998753 24457888999999999999999999976654 33345666677888888899999998877665543


Q ss_pred             CCCCCHHHHHHHHHHH------------------HhcCCchHHHHHHHHHHhcC
Q 002846          452 GVYPEEPELEALLRVS------------------VEAGKGDRVYYLLHKLRTSV  487 (874)
Q Consensus       452 Gv~Pd~~ty~~LI~~~------------------~~~G~~d~A~~ll~~M~~~~  487 (874)
                      -..-..+.||..+-..                  ...+.++.|.++|.+|...+
T Consensus       746 ~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~  799 (1018)
T KOG2002|consen  746 APSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNG  799 (1018)
T ss_pred             CCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3333445555544332                  12345778999999998863

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=95.37  E-value=0.98  Score=47.41  Aligned_cols=144  Identities=16%  Similarity=0.179  Sum_probs=109.9

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhCCCh
Q 002846          360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDV  438 (874)
Q Consensus       360 ~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd-~~tYn~LI~a~~k~G~~  438 (874)
                      -+|...|+...|..-+++-.+.. +-+.-+|.++...|-+.|..+.|.+-|+.-.+.  .|+ -.+.|..=..+|..|+.
T Consensus        43 l~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC~qg~~  119 (250)
T COG3063          43 LGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLCAQGRP  119 (250)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHHhCCCh
Confidence            58889999999999999988864 335679999999999999999999999987664  444 34455555678999999


Q ss_pred             hHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCChhHHHHHHHHHhcch
Q 002846          439 DKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKE  506 (874)
Q Consensus       439 ~~A~~l~~eM~~~Gv~P-d~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~T~~~I~~~~~s~~  506 (874)
                      ++|+..|+.....--.| -..||.-+--+..+.|+.+.|...|.+-........+.....-...++.+.
T Consensus       120 ~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~  188 (250)
T COG3063         120 EEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGD  188 (250)
T ss_pred             HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhccc
Confidence            99999999988763333 345777777677899999999999999888744444433344444444443

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.23  E-value=0.12  Score=56.70  Aligned_cols=134  Identities=13%  Similarity=0.049  Sum_probs=91.7

Q ss_pred             chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHH-HHHHh
Q 002846          356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL-SVFCN  434 (874)
Q Consensus       356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI-~a~~k  434 (874)
                      .++-+.+.-..++++.+-.++..+.--..-|.+-|| +..+++..|...+|.++|-.+....+ -|..+|-.++ .+|.+
T Consensus       363 QsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~  440 (557)
T KOG3785|consen  363 QSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIR  440 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHh
Confidence            556666666677888888877777655555666665 67888889999999999876654433 3556666555 57778


Q ss_pred             CCChhHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHhcCCchHHHHHHHHHHhcCCCCChhHHH
Q 002846          435 NGDVDKACSVEEHMLEHGVYPEEPELEALL-RVSVEAGKGDRVYYLLHKLRTSVRKVSPSTAD  496 (874)
Q Consensus       435 ~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI-~~~~~~G~~d~A~~ll~~M~~~~~~~sp~T~~  496 (874)
                      ++..+.|++++-.|..   ..+..+.--|| ..|-+++.+--|-+.|+.+...  .|+|+-|+
T Consensus       441 nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWe  498 (557)
T KOG3785|consen  441 NKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWE  498 (557)
T ss_pred             cCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccC
Confidence            8899888887765543   22333333333 4466778888888888888777  77776553

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=95.17  E-value=0.16  Score=55.65  Aligned_cols=127  Identities=10%  Similarity=0.066  Sum_probs=98.2

Q ss_pred             chHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 002846          356 EIRLSEDAKKYAFQRGFEIYEKMCLDE-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN  434 (874)
Q Consensus       356 n~lI~~~~k~g~~~~A~~lf~~M~~~G-v~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k  434 (874)
                      ..++...-+.+.++.|..+|.+-.+.+ +...+....++|.- ...++.+.|..+|+...+. +.-+...|..-|+.+.+
T Consensus         5 i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~-~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~   82 (280)
T PF05843_consen    5 IQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEY-YCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIK   82 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHH-HTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHH
Confidence            677788888888999999999998653 33444444444433 3356788899999998876 55667778889999999


Q ss_pred             CCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          435 NGDVDKACSVEEHMLEHGVYPEE----PELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       435 ~G~~~~A~~l~~eM~~~Gv~Pd~----~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      .|+.+.|..+|+.....  .|..    ..|...|+.=.+.|+++.+..+..++.+.
T Consensus        83 ~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~  136 (280)
T PF05843_consen   83 LNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL  136 (280)
T ss_dssp             TT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             hCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            99999999999998865  3433    48999999999999999999999999886

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=95.10  E-value=0.38  Score=45.68  Aligned_cols=105  Identities=14%  Similarity=0.152  Sum_probs=83.3

Q ss_pred             chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhC
Q 002846          356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN  435 (874)
Q Consensus       356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~  435 (874)
                      ..+...+.+.|+.++|.+.|+.....+ +.+...+..+...+...|++++|..++++....+ ..+...|..+-..|...
T Consensus        21 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~   98 (135)
T TIGR02552        21 YALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLAL   98 (135)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHc
Confidence            445567778999999999999988764 4477888899999999999999999999887664 33456666677788899


Q ss_pred             CChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 002846          436 GDVDKACSVEEHMLEHGVYPEEPELEALL  464 (874)
Q Consensus       436 G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI  464 (874)
                      |+.++|...|+...+..  |+...+..+.
T Consensus        99 g~~~~A~~~~~~al~~~--p~~~~~~~~~  125 (135)
T TIGR02552        99 GEPESALKALDLAIEIC--GENPEYSELK  125 (135)
T ss_pred             CCHHHHHHHHHHHHHhc--cccchHHHHH
Confidence            99999999999888743  6665554443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=95.07  E-value=1.8  Score=55.23  Aligned_cols=224  Identities=11%  Similarity=0.062  Sum_probs=141.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCH---HHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCc
Q 002846          191 QFQLRVELDMCSKRGDVMGAIRLYDKAQRE-GIKLGQ---YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNS  266 (874)
Q Consensus       191 ~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~-Gi~pd~---~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s  266 (874)
                      ...|-.-|.-....+++++|.++++++... +++-..   -.|.++|+.-.          --|.-+....+|.      
T Consensus      1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn----------~yG~eesl~kVFe------ 1521 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLEN----------AYGTEESLKKVFE------ 1521 (1710)
T ss_pred             chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHH----------hhCcHHHHHHHHH------
Confidence            367777777777888888888888877632 333222   24445554444          3344445556663      


Q ss_pred             hhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHc-CCCCCeeeeccccHHHHHHhhhcCCCCccccc
Q 002846          267 TELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENL-GQFSNGHMKLNSQLLDGRSNLERGPDDQSRKK  345 (874)
Q Consensus       267 ~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~-Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~  345 (874)
                       ....  .+.+...|..|..-      |.+.+.+++|.++|+.|.++ |-.+  -.                      | 
T Consensus      1522 -RAcq--ycd~~~V~~~L~~i------y~k~ek~~~A~ell~~m~KKF~q~~--~v----------------------W- 1567 (1710)
T KOG1070|consen 1522 -RACQ--YCDAYTVHLKLLGI------YEKSEKNDEADELLRLMLKKFGQTR--KV----------------------W- 1567 (1710)
T ss_pred             -HHHH--hcchHHHHHHHHHH------HHHhhcchhHHHHHHHHHHHhcchh--hH----------------------H-
Confidence             1111  12233347777777      88888888888888888765 2111  11                      2 


Q ss_pred             ccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc
Q 002846          346 DWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN---EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL  422 (874)
Q Consensus       346 ~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd---~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~  422 (874)
                                ...++.+.+..+-+.|.+++.+-.+.  .|-   +-...-.+..-.+.|+.+.+..+|+..... .+-..
T Consensus      1568 ----------~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a-yPKRt 1634 (1710)
T KOG1070|consen 1568 ----------IMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA-YPKRT 1634 (1710)
T ss_pred             ----------HHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh-Cccch
Confidence                      45566667777777777777765543  232   333444555556788888888888877765 22356


Q ss_pred             ccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCchHHH
Q 002846          423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE--PELEALLRVSVEAGKGDRVY  477 (874)
Q Consensus       423 ~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~--~ty~~LI~~~~~~G~~d~A~  477 (874)
                      ..|+..|++=.++|+.+.+..+|+.....++.|--  .-|...|..=-..|+-..+.
T Consensus      1635 DlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1635 DLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred             hHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence            77888888888888888888888888888777643  45566665555666644333

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=95.06  E-value=3.7  Score=47.40  Aligned_cols=138  Identities=12%  Similarity=0.023  Sum_probs=100.4

Q ss_pred             cccHHHHHHhhhcC---CCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 002846          324 NSQLLDGRSNLERG---PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN-EASLTAVGRMAMS  399 (874)
Q Consensus       324 ~g~~~eA~~l~~~m---~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd-~~tyn~LI~~~~~  399 (874)
                      .++.++|+..+.++   .||...|          .....+-+.+.++..+|.+.|+.+...  .|+ ....-.+-.+|.+
T Consensus       319 ~~~~d~A~~~l~~L~~~~P~N~~~----------~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~  386 (484)
T COG4783         319 AGQYDEALKLLQPLIAAQPDNPYY----------LELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLK  386 (484)
T ss_pred             hcccchHHHHHHHHHHhCCCCHHH----------HHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHh
Confidence            56677777777776   5655555          055567778888888888888888875  355 4556667788888


Q ss_pred             cCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHH
Q 002846          400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL  479 (874)
Q Consensus       400 ~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~l  479 (874)
                      .|++.+|..+++.-... .+-|...|..|-.+|...|+..+|..-..|                  +|...|.+++|...
T Consensus       387 ~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~  447 (484)
T COG4783         387 GGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIF  447 (484)
T ss_pred             cCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHH
Confidence            88888888888876654 456778888888888888888888766555                  34567888888888


Q ss_pred             HHHHHhcCCCCCh
Q 002846          480 LHKLRTSVRKVSP  492 (874)
Q Consensus       480 l~~M~~~~~~~sp  492 (874)
                      +...++..-.-+|
T Consensus       448 l~~A~~~~~~~~~  460 (484)
T COG4783         448 LMRASQQVKLGFP  460 (484)
T ss_pred             HHHHHHhccCCcH
Confidence            8887776433333

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=94.94  E-value=0.44  Score=46.64  Aligned_cols=92  Identities=10%  Similarity=-0.102  Sum_probs=44.0

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 002846          393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK  472 (874)
Q Consensus       393 LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~  472 (874)
                      +-..+...|++++|...|....... ..+...|..+-..+.+.|++++|...|+...... ..+...+..+-.++...|+
T Consensus        30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~  107 (144)
T PRK15359         30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE  107 (144)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence            3444455555555555555544331 1233344444444445555555555555555422 1234444444445555555


Q ss_pred             chHHHHHHHHHHhc
Q 002846          473 GDRVYYLLHKLRTS  486 (874)
Q Consensus       473 ~d~A~~ll~~M~~~  486 (874)
                      .++|...|+.....
T Consensus       108 ~~eAi~~~~~Al~~  121 (144)
T PRK15359        108 PGLAREAFQTAIKM  121 (144)
T ss_pred             HHHHHHHHHHHHHh
Confidence            55555555555443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=94.92  E-value=0.56  Score=45.88  Aligned_cols=100  Identities=8%  Similarity=0.020  Sum_probs=82.6

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChh
Q 002846          360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD  439 (874)
Q Consensus       360 ~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~  439 (874)
                      ..+...|++++|...|+...... +.+...|..+-.++.+.|++++|...|+...... ..+...+..+-.++...|+.+
T Consensus        32 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~~  109 (144)
T PRK15359         32 YASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEPG  109 (144)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHH
Confidence            55678899999999999988764 4478889999999999999999999999998753 345677777888888999999


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHH
Q 002846          440 KACSVEEHMLEHGVYPEEPELEAL  463 (874)
Q Consensus       440 ~A~~l~~eM~~~Gv~Pd~~ty~~L  463 (874)
                      +|...|+.....  .|+...|..+
T Consensus       110 eAi~~~~~Al~~--~p~~~~~~~~  131 (144)
T PRK15359        110 LAREAFQTAIKM--SYADASWSEI  131 (144)
T ss_pred             HHHHHHHHHHHh--CCCChHHHHH
Confidence            999999998874  4776665543

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=94.92  E-value=0.26  Score=41.48  Aligned_cols=92  Identities=17%  Similarity=0.146  Sum_probs=74.3

Q ss_pred             hHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCC
Q 002846          357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG  436 (874)
Q Consensus       357 ~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G  436 (874)
                      .+...+...|++++|..+|+...... +.+...+..+...+...|++++|.+.++...... ..+..++..+...+...|
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   82 (100)
T cd00189           5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG   82 (100)
T ss_pred             HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence            44556778899999999999988753 2344778888999999999999999999887763 233457777888899999


Q ss_pred             ChhHHHHHHHHHHH
Q 002846          437 DVDKACSVEEHMLE  450 (874)
Q Consensus       437 ~~~~A~~l~~eM~~  450 (874)
                      +.++|...+.....
T Consensus        83 ~~~~a~~~~~~~~~   96 (100)
T cd00189          83 KYEEALEAYEKALE   96 (100)
T ss_pred             hHHHHHHHHHHHHc
Confidence            99999999988765

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=94.91  E-value=0.94  Score=46.91  Aligned_cols=127  Identities=13%  Similarity=0.125  Sum_probs=97.1

Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CcccHHHHHHHH-HhCCC--hhH
Q 002846          365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVF-CNNGD--VDK  440 (874)
Q Consensus       365 ~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~P-d~~tYn~LI~a~-~k~G~--~~~  440 (874)
                      .++.+++...++...... +.|...|..|-..|...|++++|...|++..+.  .| +...+..+-.++ ...|+  .++
T Consensus        52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~  128 (198)
T PRK10370         52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQ  128 (198)
T ss_pred             chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence            456677777777666544 568889999999999999999999999988775  34 455555555543 56677  599


Q ss_pred             HHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCCh-hHHHHH
Q 002846          441 ACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP-STADVI  498 (874)
Q Consensus       441 A~~l~~eM~~~Gv~P-d~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp-~T~~~I  498 (874)
                      |.+++++..+..  | +...+..|-..+...|++++|...++++.+.  .+.. +-+.+|
T Consensus       129 A~~~l~~al~~d--P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l--~~~~~~r~~~i  184 (198)
T PRK10370        129 TREMIDKALALD--ANEVTALMLLASDAFMQADYAQAIELWQKVLDL--NSPRVNRTQLV  184 (198)
T ss_pred             HHHHHHHHHHhC--CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCccHHHHH
Confidence            999999999865  5 5567777777889999999999999999886  3333 345555

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.85  E-value=5.9  Score=44.03  Aligned_cols=148  Identities=8%  Similarity=-0.003  Sum_probs=103.9

Q ss_pred             cccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCHHH-HHHH
Q 002846          324 NSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAK---------KYAFQRGFEIYEKMCLDEVPMNEAS-LTAV  393 (874)
Q Consensus       324 ~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k---------~g~~~~A~~lf~~M~~~Gv~Pd~~t-yn~L  393 (874)
                      .+++.+|..+..++.|..- |           .-++.|...         ...+.-|...|.-.-..+..-|+.. =-++
T Consensus       298 q~dVqeA~~L~Kdl~PttP-~-----------EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsm  365 (557)
T KOG3785|consen  298 QNDVQEAISLCKDLDPTTP-Y-----------EYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSM  365 (557)
T ss_pred             cccHHHHHHHHhhcCCCCh-H-----------HHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHH
Confidence            7888999999888866431 1           334443332         2246667777776666665544332 2455


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCC
Q 002846          394 GRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL-LRVSVEAGK  472 (874)
Q Consensus       394 I~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~L-I~~~~~~G~  472 (874)
                      ...+.-.-++|+.+-.++.++..=..-|...|| +-.++|..|+..+|.++|-.+....+ .|..+|.++ -++|.+++.
T Consensus       366 As~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nkk  443 (557)
T KOG3785|consen  366 ASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNKK  443 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcCC
Confidence            666666677899999998888776667788887 78899999999999999966544332 456677655 466789999


Q ss_pred             chHHHHHHHHHHh
Q 002846          473 GDRVYYLLHKLRT  485 (874)
Q Consensus       473 ~d~A~~ll~~M~~  485 (874)
                      ..-|++++-.|..
T Consensus       444 P~lAW~~~lk~~t  456 (557)
T KOG3785|consen  444 PQLAWDMMLKTNT  456 (557)
T ss_pred             chHHHHHHHhcCC
Confidence            9999999877654

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=94.74  E-value=0.47  Score=43.49  Aligned_cols=96  Identities=11%  Similarity=0.030  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----cccHHHHHHHHHhCCChhHHHHHHHHHHHcC--CCCCHHHHHH
Q 002846          389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LRSYGPALSVFCNNGDVDKACSVEEHMLEHG--VYPEEPELEA  462 (874)
Q Consensus       389 tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd----~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~G--v~Pd~~ty~~  462 (874)
                      ++-.+...+.+.|+.++|.+.|..+....  |+    ...+..+-..+.+.|++++|...|+.+....  -......+..
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            34455556666777777777777666542  22    1234445666667777777777777766532  1111344555


Q ss_pred             HHHHHHhcCCchHHHHHHHHHHhc
Q 002846          463 LLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       463 LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      +-..+.+.|+.++|...+.++...
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHH
Confidence            556666777777777777777665

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.73  E-value=1.5  Score=47.38  Aligned_cols=173  Identities=12%  Similarity=0.050  Sum_probs=105.4

Q ss_pred             CCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccH
Q 002846          248 KSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQL  327 (874)
Q Consensus       248 k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~  327 (874)
                      +.|+.+.|++-|.       +...-+|..+.+.||..+.-       -+.++.+.|+....|+.++|++-- --++-|..
T Consensus       156 kegqyEaAvqkFq-------aAlqvsGyqpllAYniALaH-------y~~~qyasALk~iSEIieRG~r~H-PElgIGm~  220 (459)
T KOG4340|consen  156 KEGQYEAAVQKFQ-------AALQVSGYQPLLAYNLALAH-------YSSRQYASALKHISEIIERGIRQH-PELGIGMT  220 (459)
T ss_pred             ccccHHHHHHHHH-------HHHhhcCCCchhHHHHHHHH-------HhhhhHHHHHHHHHHHHHhhhhcC-CccCccce
Confidence            8899999999995       44444478899999988654       467889999999999999996421 11111111


Q ss_pred             HHHHHhhhcCCCCcccccccccccCCccchHHH-------HHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh
Q 002846          328 LDGRSNLERGPDDQSRKKDWSIDNQDADEIRLS-------EDAKKYAFQRGFEIYEKMCLD-EVPMNEASLTAVGRMAMS  399 (874)
Q Consensus       328 ~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~-------~~~k~g~~~~A~~lf~~M~~~-Gv~Pd~~tyn~LI~~~~~  399 (874)
                      .+        .||+-+..+ .  ...+-+.++.       -+.+.++.+.|.+-+-+|.-+ .-..|.+|...+.-.-. 
T Consensus       221 te--------giDvrsvgN-t--~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-  288 (459)
T KOG4340|consen  221 TE--------GIDVRSVGN-T--LVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-  288 (459)
T ss_pred             ec--------cCchhcccc-h--HHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-
Confidence            11        122111100 0  0000022222       234566777777777777643 23457777766543322 


Q ss_pred             cCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHH
Q 002846          400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM  448 (874)
Q Consensus       400 ~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM  448 (874)
                      .+++.+.++-+.-+...+- .-..||..++--||++.-++.|-.++.+=
T Consensus       289 ~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn  336 (459)
T KOG4340|consen  289 DARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAEN  336 (459)
T ss_pred             cCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence            3445555555555554433 23568888999999999999998888763

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=94.72  E-value=4.3  Score=52.13  Aligned_cols=202  Identities=12%  Similarity=0.046  Sum_probs=144.8

Q ss_pred             CCCCHHHHHHHHhhcccCchhhhhcCCCC----chhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeec
Q 002846          248 KSGSGMRTLDTFEVSTMNSTELGDSRDMD----NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL  323 (874)
Q Consensus       248 k~G~~~~A~~vf~v~~~~s~em~~~~gi~----d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~  323 (874)
                      ..+.++.|..++.      +.+..- .+.    -.-.|-++++.      -.--|.-+...++|++..+.-   |..+  
T Consensus      1470 elsEiekAR~iae------rAL~tI-N~REeeEKLNiWiA~lNl------En~yG~eesl~kVFeRAcqyc---d~~~-- 1531 (1710)
T KOG1070|consen 1470 ELSEIEKARKIAE------RALKTI-NFREEEEKLNIWIAYLNL------ENAYGTEESLKKVFERACQYC---DAYT-- 1531 (1710)
T ss_pred             hhhhhHHHHHHHH------HHhhhC-CcchhHHHHHHHHHHHhH------HHhhCcHHHHHHHHHHHHHhc---chHH--
Confidence            4567778888774      222211 222    12346666666      555566677788888887653   1111  


Q ss_pred             cccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 002846          324 NSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDG  403 (874)
Q Consensus       324 ~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~  403 (874)
                                         .|           ..|..-|.+.+..++|-++|+.|.++-- -....|...+..+.+..+.
T Consensus      1532 -------------------V~-----------~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~ 1580 (1710)
T KOG1070|consen 1532 -------------------VH-----------LKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEA 1580 (1710)
T ss_pred             -------------------HH-----------HHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHH
Confidence                               12           7888899999999999999999998622 4568899999999999999


Q ss_pred             hHHHHHHHHHHHCCCCCCcc---cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHH
Q 002846          404 DMAFDMVKRMKSLGINPRLR---SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLL  480 (874)
Q Consensus       404 d~A~~l~~~M~~~Gi~Pd~~---tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll  480 (874)
                      +.|..++.+..+.  .|...   .-.-....-.++|+.+.+..+|+.....- +--...|+..|+.=.++|+.+.+..+|
T Consensus      1581 ~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lf 1657 (1710)
T KOG1070|consen 1581 EAARELLKRALKS--LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLF 1657 (1710)
T ss_pred             HHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHH
Confidence            9999999886654  46522   22333444457899999999999988643 235678999999999999999999999


Q ss_pred             HHHHhcCCCCChh-HHHHHHHHHh
Q 002846          481 HKLRTSVRKVSPS-TADVIAKWFN  503 (874)
Q Consensus       481 ~~M~~~~~~~sp~-T~~~I~~~~~  503 (874)
                      ++....  ..++- +--....|++
T Consensus      1658 eRvi~l--~l~~kkmKfffKkwLe 1679 (1710)
T KOG1070|consen 1658 ERVIEL--KLSIKKMKFFFKKWLE 1679 (1710)
T ss_pred             HHHHhc--CCChhHhHHHHHHHHH
Confidence            999999  66665 2222444444

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=94.63  E-value=0.22  Score=53.34  Aligned_cols=102  Identities=22%  Similarity=0.210  Sum_probs=79.8

Q ss_pred             CCCHHHHHHHHHHHHh-----cCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCC----------------ChhHHH
Q 002846          384 PMNEASLTAVGRMAMS-----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG----------------DVDKAC  442 (874)
Q Consensus       384 ~Pd~~tyn~LI~~~~~-----~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G----------------~~~~A~  442 (874)
                      .-|-.+|-+.+..+..     .+.++-....++.|++.|+.-|+.+|+.||.-+-+..                .-+-|.
T Consensus        64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I  143 (406)
T KOG3941|consen   64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI  143 (406)
T ss_pred             cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence            3466677777766664     3667888888888999999999999999888776653                224578


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHh
Q 002846          443 SVEEHMLEHGVYPEEPELEALLRVSVEAGKG-DRVYYLLHKLRT  485 (874)
Q Consensus       443 ~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~-d~A~~ll~~M~~  485 (874)
                      .++++|..+||.||-.+-..||+++.+-+.. .+..+++--|.+
T Consensus       144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk  187 (406)
T KOG3941|consen  144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK  187 (406)
T ss_pred             HHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence            9999999999999999999999999888764 466666666654

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=94.63  E-value=0.52  Score=45.98  Aligned_cols=124  Identities=15%  Similarity=0.117  Sum_probs=86.3

Q ss_pred             chHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcc--cHHHHHHH
Q 002846          356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPM--NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR--SYGPALSV  431 (874)
Q Consensus       356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~P--d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~--tYn~LI~a  431 (874)
                      ..++..+ ..++...+.+.++.+....-.-  .....=.+...+...|++++|...|+......-.|...  ..-.|-..
T Consensus        16 ~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~   94 (145)
T PF09976_consen   16 EQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARI   94 (145)
T ss_pred             HHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence            4445555 4888899999999998864111  11223334577888999999999999998876333322  22235566


Q ss_pred             HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHH
Q 002846          432 FCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK  482 (874)
Q Consensus       432 ~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~  482 (874)
                      +...|+.++|...++......  .....+..+=+.|.+.|+.++|...|..
T Consensus        95 ~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen   95 LLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            778899999999997754433  2334556677778999999999998865

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=94.59  E-value=0.24  Score=47.55  Aligned_cols=99  Identities=16%  Similarity=0.104  Sum_probs=61.3

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 002846          386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR  465 (874)
Q Consensus       386 d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~  465 (874)
                      |+.++.++|-++++.|+++....+++..=  |+.++...=         .+.         --....+.|+..+..+++.
T Consensus         1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~~---------~~~---------~~~~spl~Pt~~lL~AIv~   60 (126)
T PF12921_consen    1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKKK---------EGD---------YPPSSPLYPTSRLLIAIVH   60 (126)
T ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCccc---------cCc---------cCCCCCCCCCHHHHHHHHH
Confidence            56778888888888888888877776432  332221000         000         1122356677888888888


Q ss_pred             HHHhcCCchHHHHHHHHHHhc-CCCCChhHHHHHHHHHhc
Q 002846          466 VSVEAGKGDRVYYLLHKLRTS-VRKVSPSTADVIAKWFNS  504 (874)
Q Consensus       466 ~~~~~G~~d~A~~ll~~M~~~-~~~~sp~T~~~I~~~~~s  504 (874)
                      +|+.+|++..|+++++...+. .+.++..+|..|..|+--
T Consensus        61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v  100 (126)
T PF12921_consen   61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV  100 (126)
T ss_pred             HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence            887778888888887777664 223333477777766653

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=94.33  E-value=13  Score=42.98  Aligned_cols=279  Identities=11%  Similarity=0.049  Sum_probs=173.8

Q ss_pred             HhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Q 002846          161 EQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAA  240 (874)
Q Consensus       161 ~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~  240 (874)
                      +..++...|+++|+...+        ..|+.-.|++.|.-=.+...++.|..+|++.+-.  .|++.+|---..-=-   
T Consensus       152 E~LgNi~gaRqiferW~~--------w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~---  218 (677)
T KOG1915|consen  152 EMLGNIAGARQIFERWME--------WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEE---  218 (677)
T ss_pred             HHhcccHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHH---
Confidence            456888899999998632        5788899999999999999999999999998853  488888765554444   


Q ss_pred             cCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCC--chhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCC
Q 002846          241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN  318 (874)
Q Consensus       241 ~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~--d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd  318 (874)
                             ++|.+.-|..++.       ..++..|-.  +...+++.-.-      =.+...++.|.-+|.--...  .|.
T Consensus       219 -------k~g~~~~aR~Vye-------rAie~~~~d~~~e~lfvaFA~f------Ee~qkE~ERar~iykyAld~--~pk  276 (677)
T KOG1915|consen  219 -------KHGNVALARSVYE-------RAIEFLGDDEEAEILFVAFAEF------EERQKEYERARFIYKYALDH--IPK  276 (677)
T ss_pred             -------hcCcHHHHHHHHH-------HHHHHhhhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHh--cCc
Confidence                   7788887777774       111110111  11122222111      11222334444444332221  111


Q ss_pred             eee---ec-----------cccHHHHHHhhhcC------CCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHH
Q 002846          319 GHM---KL-----------NSQLLDGRSNLERG------PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKM  378 (874)
Q Consensus       319 ~~t---y~-----------~g~~~eA~~l~~~m------~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M  378 (874)
                      .-+   |.           ..-++++..--..+      ..|...|-.|        --.+.---..|+.+...++|+.-
T Consensus       277 ~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsW--------fdylrL~e~~g~~~~Ire~yErA  348 (677)
T KOG1915|consen  277 GRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSW--------FDYLRLEESVGDKDRIRETYERA  348 (677)
T ss_pred             ccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHH--------HHHHHHHHhcCCHHHHHHHHHHH
Confidence            100   00           11122222222222      4455555222        22334444568999999999988


Q ss_pred             HHCCCCCCH-------HHHHHH---HHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHH----hCCChhHHHHH
Q 002846          379 CLDEVPMNE-------ASLTAV---GRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC----NNGDVDKACSV  444 (874)
Q Consensus       379 ~~~Gv~Pd~-------~tyn~L---I~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~----k~G~~~~A~~l  444 (874)
                      ... ++|-.       ..|--+   +-.=....+++.+.+++....+. ++-...||.-+--.|+    ++.++..|.++
T Consensus       349 Ian-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARki  426 (677)
T KOG1915|consen  349 IAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKI  426 (677)
T ss_pred             Hcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHH
Confidence            754 55521       112111   11112467899999999998874 5556788888777766    46789999998


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          445 EEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       445 ~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      +....  |..|-..+|-.-|..=.+.+.+|+...|+.+...-
T Consensus       427 LG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~  466 (677)
T KOG1915|consen  427 LGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF  466 (677)
T ss_pred             HHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            87654  67799999988888888999999999999998876

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=94.28  E-value=3.3  Score=49.25  Aligned_cols=284  Identities=11%  Similarity=0.033  Sum_probs=165.0

Q ss_pred             chHHHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 002846          156 DNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQL-RVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLY  234 (874)
Q Consensus       156 ~~~~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~ty-n~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~  234 (874)
                      .|+.+.+.+..++|++.+..-...        .-|-..| -+--.-+.+.+++++|..+|..+...  .||.+-|.-.+.
T Consensus       191 ~n~i~~E~g~~q~ale~L~~~e~~--------i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~  260 (700)
T KOG1156|consen  191 QNQILIEAGSLQKALEHLLDNEKQ--------IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLE  260 (700)
T ss_pred             HHHHHHHcccHHHHHHHHHhhhhH--------HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHH
Confidence            345677778878887777655211        0111222 34445678899999999999999876  488888887776


Q ss_pred             HHHhcccCCCcccCCCCHHHHH-HHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHc
Q 002846          235 LCSSAAVGVVKPAKSGSGMRTL-DTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENL  313 (874)
Q Consensus       235 a~~~~~~~~~~~~k~G~~~~A~-~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~  313 (874)
                      .+..         +.-..-+++ .+|...+   +..... .++--..-+.+ .+         ....+.....+..+.++
T Consensus       261 ~~lg---------k~~d~~~~lk~ly~~ls---~~y~r~-e~p~Rlplsvl-~~---------eel~~~vdkyL~~~l~K  317 (700)
T KOG1156|consen  261 KALG---------KIKDMLEALKALYAILS---EKYPRH-ECPRRLPLSVL-NG---------EELKEIVDKYLRPLLSK  317 (700)
T ss_pred             HHHH---------HHhhhHHHHHHHHHHHh---hcCccc-ccchhccHHHh-Cc---------chhHHHHHHHHHHHhhc
Confidence            6651         112222333 4443110   111110 11100011111 11         12234455666777778


Q ss_pred             CCC---CCeeeeccc--c--HHH--HHHhhhcC---------------CCCcccccccccccCCccchHHHHHHhcCCHH
Q 002846          314 GQF---SNGHMKLNS--Q--LLD--GRSNLERG---------------PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQ  369 (874)
Q Consensus       314 Gi~---Pd~~ty~~g--~--~~e--A~~l~~~m---------------~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~  369 (874)
                      |+.   +|+.++...  +  +.+  +..+...+               .|....|         ..-.++..+-+.|+++
T Consensus       318 g~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllW---------t~y~laqh~D~~g~~~  388 (700)
T KOG1156|consen  318 GVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLW---------TLYFLAQHYDKLGDYE  388 (700)
T ss_pred             CCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHH---------HHHHHHHHHHHcccHH
Confidence            754   444444311  0  110  11111111               2222222         0134567777899999


Q ss_pred             HHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHH
Q 002846          370 RGFEIYEKMCLDEVPMNEA-SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM  448 (874)
Q Consensus       370 ~A~~lf~~M~~~Gv~Pd~~-tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM  448 (874)
                      .|....+.-..+  .|+.+ -|-+=.+.++.+|++++|...+++..+... ||...-+-...-..++.++++|.++....
T Consensus       389 ~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~eA~~~~skF  465 (700)
T KOG1156|consen  389 VALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEEAEEVLSKF  465 (700)
T ss_pred             HHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHHHHHHHHHh
Confidence            999999987754  55533 455566889999999999999999887754 67666666777778899999999999888


Q ss_pred             HHcCCCCCHHHHHHHH----------HHHHhcCCchHHHHHHHHHHhc
Q 002846          449 LEHGVYPEEPELEALL----------RVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       449 ~~~Gv~Pd~~ty~~LI----------~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      ...|.  +...+-+.+          .+|.+.|++..|++=|+.+...
T Consensus       466 Tr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~  511 (700)
T KOG1156|consen  466 TREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKH  511 (700)
T ss_pred             hhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHH
Confidence            87775  333332222          2345666677776666665543

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=94.23  E-value=0.35  Score=57.33  Aligned_cols=75  Identities=11%  Similarity=0.220  Sum_probs=46.5

Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHH
Q 002846          362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKA  441 (874)
Q Consensus       362 ~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A  441 (874)
                      -..+..+.+|+.+++.+......  ..-|.-+.+-|+..|+++.|.++|-+   .+      -++-.|.+|.++|+++.|
T Consensus       742 ai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e---~~------~~~dai~my~k~~kw~da  810 (1636)
T KOG3616|consen  742 AIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTE---AD------LFKDAIDMYGKAGKWEDA  810 (1636)
T ss_pred             HhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHh---cc------hhHHHHHHHhccccHHHH
Confidence            33455667777777776665322  23456666777777777777777743   12      245667777777777777


Q ss_pred             HHHHHH
Q 002846          442 CSVEEH  447 (874)
Q Consensus       442 ~~l~~e  447 (874)
                      +++-.+
T Consensus       811 ~kla~e  816 (1636)
T KOG3616|consen  811 FKLAEE  816 (1636)
T ss_pred             HHHHHH
Confidence            766543

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.18  E-value=2  Score=49.44  Aligned_cols=215  Identities=13%  Similarity=0.081  Sum_probs=127.5

Q ss_pred             cCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhccc
Q 002846          163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREG-IKLGQYHYNVLLYLCSSAAV  241 (874)
Q Consensus       163 ~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~G-i~pd~~tyn~LL~a~~~~~~  241 (874)
                      .++.-.|..-|+..+......+       ..|-.+-..|....+-.+.+..|+...+-+ -.||++..-.-|....    
T Consensus       339 ~g~~~~a~~d~~~~I~l~~~~~-------~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL----  407 (606)
T KOG0547|consen  339 KGDSLGAQEDFDAAIKLDPAFN-------SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLL----  407 (606)
T ss_pred             cCCchhhhhhHHHHHhcCcccc-------hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHH----
Confidence            3566677788887755322111       226667778999999999999999998654 4588888877777776    


Q ss_pred             CCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeee
Q 002846          242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHM  321 (874)
Q Consensus       242 ~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~t  321 (874)
                              +++++|..=|+       +-..- .-.+.+.|--+--+      .-+.+++++++..|++-+++  .|+.. 
T Consensus       408 --------~q~e~A~aDF~-------Kai~L-~pe~~~~~iQl~~a------~Yr~~k~~~~m~~Fee~kkk--FP~~~-  462 (606)
T KOG0547|consen  408 --------QQYEEAIADFQ-------KAISL-DPENAYAYIQLCCA------LYRQHKIAESMKTFEEAKKK--FPNCP-  462 (606)
T ss_pred             --------HHHHHHHHHHH-------HHhhc-ChhhhHHHHHHHHH------HHHHHHHHHHHHHHHHHHHh--CCCCc-
Confidence                    67778888885       22211 11144444444333      44667889999999888776  33332 


Q ss_pred             eccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHH--HHH
Q 002846          322 KLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD-----EVPMNEASLT--AVG  394 (874)
Q Consensus       322 y~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~-----Gv~Pd~~tyn--~LI  394 (874)
                                          -.|           |..-..+...++++.|.+.|+.-.+-     ++..+..++-  +++
T Consensus       463 --------------------Evy-----------~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l  511 (606)
T KOG0547|consen  463 --------------------EVY-----------NLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALL  511 (606)
T ss_pred             --------------------hHH-----------HHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHh
Confidence                                122           66667777888899999988876542     2222222221  111


Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhCCChhHHHHHHHH
Q 002846          395 RMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEH  447 (874)
Q Consensus       395 ~~~~~~G~~d~A~~l~~~M~~~Gi~Pd-~~tYn~LI~a~~k~G~~~~A~~l~~e  447 (874)
                      -.- -.+++..|.++++.-.+.  .|. ...|-+|-..-...|++++|.++|+.
T Consensus       512 ~~q-wk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEk  562 (606)
T KOG0547|consen  512 VLQ-WKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEK  562 (606)
T ss_pred             hhc-hhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            111 235666666666654433  222 23444444455555555555555544

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=94.16  E-value=11  Score=43.33  Aligned_cols=127  Identities=11%  Similarity=0.007  Sum_probs=108.0

Q ss_pred             chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhC
Q 002846          356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN  435 (874)
Q Consensus       356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~  435 (874)
                      .++-+.|.-.++.++|...|+.-.+-+ +-....|+.|=.-|....+...|.+-++.-.+. .+-|-+.|-.|=.+|.-.
T Consensus       334 CiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi-~p~DyRAWYGLGQaYeim  411 (559)
T KOG1155|consen  334 CIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI-NPRDYRAWYGLGQAYEIM  411 (559)
T ss_pred             eeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc-CchhHHHHhhhhHHHHHh
Confidence            555577888899999999999887754 234678888889999999999999999998876 346788888899999999


Q ss_pred             CChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          436 GDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       436 G~~~~A~~l~~eM~~~Gv~P-d~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      +...=|+-.|++...  +.| |...|.+|=++|.+.++.++|.+.|.+...-
T Consensus       412 ~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~  461 (559)
T KOG1155|consen  412 KMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL  461 (559)
T ss_pred             cchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence            999889888888765  445 7899999999999999999999999988765

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=94.14  E-value=5.3  Score=47.56  Aligned_cols=296  Identities=13%  Similarity=0.087  Sum_probs=165.5

Q ss_pred             hcCChhHHHHHHHHHhhCCCCCCC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Q 002846          162 QRTNDSGQYKVRGITDEKGSKKSK-KDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAA  240 (874)
Q Consensus       162 k~~~~~~A~~vf~eM~~~g~k~~~-g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~  240 (874)
                      -.++..+...++.+.+..- .|.. .-+|. -.|..+-.-|-.+|+++.|..+|++..+-..+- +.....+=-.|+...
T Consensus       359 ~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~-~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~-v~dLa~vw~~waemE  435 (835)
T KOG2047|consen  359 YEGNAAEQINTYTEAVKTV-DPKKAVGSPG-TLWVEFAKLYENNGDLDDARVIFEKATKVPYKT-VEDLAEVWCAWAEME  435 (835)
T ss_pred             hcCChHHHHHHHHHHHHcc-CcccCCCChh-hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccc-hHHHHHHHHHHHHHH
Confidence            4566777788888875532 2222 11233 467788888889999999999999988654432 222222223333322


Q ss_pred             cCCCcccCCCCHHHHHHHHhhcccCchhhhhcC------CCCc--------hhhhHhhhcCcccChhhhhcCChHHHHHH
Q 002846          241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSR------DMDN--------NGQLDYGSSPMIDKLESNSSYRFDDLDST  306 (874)
Q Consensus       241 ~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~------gi~d--------~vtyn~LI~~~~~~~~~~~~g~~e~A~~l  306 (874)
                      .      +..+++.|+.++.-..    .+....      |-.+        ...|.-.++-      --..|-++....+
T Consensus       436 l------rh~~~~~Al~lm~~A~----~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dl------eEs~gtfestk~v  499 (835)
T KOG2047|consen  436 L------RHENFEAALKLMRRAT----HVPTNPELEYYDNSEPVQARLHRSLKIWSMYADL------EESLGTFESTKAV  499 (835)
T ss_pred             H------hhhhHHHHHHHHHhhh----cCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHH------HHHhccHHHHHHH
Confidence            1      5566777777663110    011110      1111        1224444444      3445678888889


Q ss_pred             HHHHHHcCCCCCeeeec-------cccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHH-hcC--CHHHHHHHHH
Q 002846          307 FNEKENLGQFSNGHMKL-------NSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDA-KKY--AFQRGFEIYE  376 (874)
Q Consensus       307 f~eM~~~Gi~Pd~~ty~-------~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~-k~g--~~~~A~~lf~  376 (874)
                      ++.|.+..+..-.+.-|       +.-.+++.+.+++..   ..+ .|.++-+.. |+-+.-+. +.|  .++.|.+||+
T Consensus       500 YdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI---~LF-k~p~v~diW-~tYLtkfi~rygg~klEraRdLFE  574 (835)
T KOG2047|consen  500 YDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGI---SLF-KWPNVYDIW-NTYLTKFIKRYGGTKLERARDLFE  574 (835)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCC---ccC-CCccHHHHH-HHHHHHHHHHhcCCCHHHHHHHHH
Confidence            99998877654433333       555677777777760   011 122222122 33333333 333  7999999999


Q ss_pred             HHHHCCCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHHCCCCCC--cccHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 002846          377 KMCLDEVPMNEASLTAVGRMA--MSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFCNNGDVDKACSVEEHMLEHG  452 (874)
Q Consensus       377 ~M~~~Gv~Pd~~tyn~LI~~~--~~~G~~d~A~~l~~~M~~~Gi~Pd--~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~G  452 (874)
                      +-.+ |++|.-.-+--|+-+-  -+.|-...|..++++.- .++.+.  ...||..|.--...=-+.....+|++.++. 
T Consensus       575 qaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat-~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~-  651 (835)
T KOG2047|consen  575 QALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT-SAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES-  651 (835)
T ss_pred             HHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh-
Confidence            9888 8887544333222221  23577888888888743 334443  456777776554443344555666665553 


Q ss_pred             CCCCHHHHHHHHHHH---HhcCCchHHHHHHHHHHh
Q 002846          453 VYPEEPELEALLRVS---VEAGKGDRVYYLLHKLRT  485 (874)
Q Consensus       453 v~Pd~~ty~~LI~~~---~~~G~~d~A~~ll~~M~~  485 (874)
                       -||...=..-|+..   ++.|.+|+|..++..-.+
T Consensus       652 -Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq  686 (835)
T KOG2047|consen  652 -LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ  686 (835)
T ss_pred             -CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence             45555444433332   567777777777765443

>PRK04841 transcriptional regulator MalT; Provisional

Probab=93.90  E-value=12  Score=47.62  Aligned_cols=275  Identities=14%  Similarity=0.037  Sum_probs=149.5

Q ss_pred             hcCChhHHHHHHHHHhhCCCCCCCCCCCCHH-HHHH-HHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHH
Q 002846          162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQF-QLRV-ELDMCSKRGDVMGAIRLYDKAQREGIKLGQ----YHYNVLLYL  235 (874)
Q Consensus       162 k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~-tyn~-LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~----~tyn~LL~a  235 (874)
                      ..++.++|..+++.....-...+.+..|... .... +-..+...|++++|...+++....--..+.    ...+.+-..
T Consensus       421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~  500 (903)
T PRK04841        421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV  500 (903)
T ss_pred             HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence            4567778888877764321111111112211 1122 223456789999999999998753111121    122222222


Q ss_pred             HHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCc--hhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHc
Q 002846          236 CSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDN--NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENL  313 (874)
Q Consensus       236 ~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d--~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~  313 (874)
                      +.          ..|++++|...+.-.    .+.....|-..  ..+++.+-..      +...|+++.|...+++....
T Consensus       501 ~~----------~~G~~~~A~~~~~~a----l~~~~~~g~~~~~~~~~~~la~~------~~~~G~~~~A~~~~~~al~~  560 (903)
T PRK04841        501 HH----------CKGELARALAMMQQT----EQMARQHDVYHYALWSLLQQSEI------LFAQGFLQAAYETQEKAFQL  560 (903)
T ss_pred             HH----------HcCCHHHHHHHHHHH----HHHHhhhcchHHHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHH
Confidence            33          578999998888511    01111111111  1233444444      67889999999988876543


Q ss_pred             ----CCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHC--CCCC--
Q 002846          314 ----GQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD--EVPM--  385 (874)
Q Consensus       314 ----Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~--Gv~P--  385 (874)
                          |. ++....                  ...+           ..+-..+...|++++|.+.+.+....  ...+  
T Consensus       561 ~~~~~~-~~~~~~------------------~~~~-----------~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~  610 (903)
T PRK04841        561 IEEQHL-EQLPMH------------------EFLL-----------RIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQ  610 (903)
T ss_pred             HHHhcc-ccccHH------------------HHHH-----------HHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchH
Confidence                11 000000                  0001           22333455679999999988876542  1112  


Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCcccH-----HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH--
Q 002846          386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN-PRLRSY-----GPALSVFCNNGDVDKACSVEEHMLEHGVYPEE--  457 (874)
Q Consensus       386 d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~-Pd~~tY-----n~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~--  457 (874)
                      ...++..+...+...|+.++|.+.+.+.....-. .....+     ...+..+...|+.+.|.+++............  
T Consensus       611 ~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~  690 (903)
T PRK04841        611 QLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFL  690 (903)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhH
Confidence            2344555667788899999999998887542110 111111     11224455688999999887765442211111  


Q ss_pred             -HHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          458 -PELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       458 -~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                       ..+..+-.++...|+.++|..++.+....
T Consensus       691 ~~~~~~~a~~~~~~g~~~~A~~~l~~al~~  720 (903)
T PRK04841        691 QGQWRNIARAQILLGQFDEAEIILEELNEN  720 (903)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence             11345566678889999999999887653

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=93.84  E-value=0.42  Score=45.89  Aligned_cols=56  Identities=16%  Similarity=0.116  Sum_probs=48.2

Q ss_pred             CCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCC
Q 002846          417 GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH-GVYPEEPELEALLRVSVEAGK  472 (874)
Q Consensus       417 Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~-Gv~Pd~~ty~~LI~~~~~~G~  472 (874)
                      .+.|+..+..+++.+|+..|++..|+++.+...+. ++..+..+|..|+.-+...-+
T Consensus        47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~  103 (126)
T PF12921_consen   47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS  103 (126)
T ss_pred             CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence            47799999999999999999999999999998765 888889999999987655443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=93.76  E-value=3.5  Score=45.03  Aligned_cols=117  Identities=16%  Similarity=0.174  Sum_probs=65.4

Q ss_pred             CCHHHHHHHHHHHHH----CCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcc------cHHHHHHHHH
Q 002846          366 YAFQRGFEIYEKMCL----DEVPM--NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR------SYGPALSVFC  433 (874)
Q Consensus       366 g~~~~A~~lf~~M~~----~Gv~P--d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~------tYn~LI~a~~  433 (874)
                      |++++|.+.|++-.+    .| .+  -..++.-+...+.+.|++++|.++|+++...-+.-+..      .|-..+-.+.
T Consensus       129 ~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L  207 (282)
T PF14938_consen  129 GDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHL  207 (282)
T ss_dssp             --HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHH
Confidence            455666665554332    23 11  13456778888999999999999999987664332222      2223344555


Q ss_pred             hCCChhHHHHHHHHHHHc--CCCC--CHHHHHHHHHHHHhcCCch---HHHHHHHHHH
Q 002846          434 NNGDVDKACSVEEHMLEH--GVYP--EEPELEALLRVSVEAGKGD---RVYYLLHKLR  484 (874)
Q Consensus       434 k~G~~~~A~~l~~eM~~~--Gv~P--d~~ty~~LI~~~~~~G~~d---~A~~ll~~M~  484 (874)
                      ..||...|.+.|+.....  ++..  .-.....||.++ +.|+.+   +|..-|+.+.
T Consensus       208 ~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~-~~~D~e~f~~av~~~d~~~  264 (282)
T PF14938_consen  208 AMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY-EEGDVEAFTEAVAEYDSIS  264 (282)
T ss_dssp             HTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH-HTT-CCCHHHHCHHHTTSS
T ss_pred             HcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HhCCHHHHHHHHHHHcccC
Confidence            678999999999987654  2322  233445566665 445444   4444444443

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=93.70  E-value=0.69  Score=53.02  Aligned_cols=111  Identities=11%  Similarity=0.120  Sum_probs=89.9

Q ss_pred             cccHHHHHHhhhcC---CCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 002846          324 NSQLLDGRSNLERG---PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM  400 (874)
Q Consensus       324 ~g~~~eA~~l~~~m---~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~  400 (874)
                      .++++.|..+|+++   .|++  .           ..|...+...++-.+|.+++++..... +-|........+.|.+.
T Consensus       182 t~~~~~ai~lle~L~~~~pev--~-----------~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k  247 (395)
T PF09295_consen  182 TQRYDEAIELLEKLRERDPEV--A-----------VLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK  247 (395)
T ss_pred             cccHHHHHHHHHHHHhcCCcH--H-----------HHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence            66788888888888   4442  2           446667777788899999999888642 44677777788889999


Q ss_pred             CChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhCCChhHHHHHHHHHHH
Q 002846          401 GDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLE  450 (874)
Q Consensus       401 G~~d~A~~l~~~M~~~Gi~Pd-~~tYn~LI~a~~k~G~~~~A~~l~~eM~~  450 (874)
                      ++.+.|+.+.+++...  .|+ ..+|..|..+|...|+++.|+..++.|.-
T Consensus       248 ~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm  296 (395)
T PF09295_consen  248 KKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM  296 (395)
T ss_pred             CCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence            9999999999998875  566 45999999999999999999999988764

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.61  E-value=1.5  Score=47.02  Aligned_cols=121  Identities=18%  Similarity=0.150  Sum_probs=85.0

Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCC
Q 002846          361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG  436 (874)
Q Consensus       361 ~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~----~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G  436 (874)
                      .+.|..+++-|...+++|.+-.   +..|.+-|..++.+    .+.+.+|+-+|++|.+. ..|+.-+-|-...++...|
T Consensus       146 I~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~  221 (299)
T KOG3081|consen  146 ILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLG  221 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhc
Confidence            3446668888999999998754   67777766665554    55788999999998764 6688888888888888889


Q ss_pred             ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHhc
Q 002846          437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG-DRVYYLLHKLRTS  486 (874)
Q Consensus       437 ~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~-d~A~~ll~~M~~~  486 (874)
                      ++++|..++++...+.- -+..+..-||-.--..|.. +-..+.+..++..
T Consensus       222 ~~eeAe~lL~eaL~kd~-~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~  271 (299)
T KOG3081|consen  222 RYEEAESLLEEALDKDA-KDPETLANLIVLALHLGKDAEVTERNLSQLKLS  271 (299)
T ss_pred             CHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence            99999999998887642 2445555555554555554 3345566666554

>PRK04841 transcriptional regulator MalT; Provisional

Probab=93.60  E-value=6.3  Score=50.20  Aligned_cols=272  Identities=8%  Similarity=-0.006  Sum_probs=156.8

Q ss_pred             HhcCChhHHHHHHHHHhhCCCCCCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CC--HHHHHHHHH
Q 002846          161 EQRTNDSGQYKVRGITDEKGSKKSKKDRS-EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIK---LG--QYHYNVLLY  234 (874)
Q Consensus       161 ~k~~~~~~A~~vf~eM~~~g~k~~~g~~P-d~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~---pd--~~tyn~LL~  234 (874)
                      ...++.++|...+++....-  +.. ..+ -...++.+-..+...|++++|...+.+.....-.   +.  ..+++.+-.
T Consensus       463 ~~~g~~~~A~~~~~~al~~~--~~~-~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~  539 (903)
T PRK04841        463 INDGDPEEAERLAELALAEL--PLT-WYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE  539 (903)
T ss_pred             HhCCCHHHHHHHHHHHHhcC--CCc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence            45678889999998864421  111 011 1134455556678899999999999998742111   11  122222333


Q ss_pred             HHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCC----chhhhHhhhcCcccChhhhhcCChHHHHHHHHHH
Q 002846          235 LCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD----NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK  310 (874)
Q Consensus       235 a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~----d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM  310 (874)
                      .+.          ..|++++|...+.-.    .+.....+..    ....+..+-..      +...|++++|...+.+.
T Consensus       540 ~~~----------~~G~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~~~la~~------~~~~G~~~~A~~~~~~a  599 (903)
T PRK04841        540 ILF----------AQGFLQAAYETQEKA----FQLIEEQHLEQLPMHEFLLRIRAQL------LWEWARLDEAEQCARKG  599 (903)
T ss_pred             HHH----------HCCCHHHHHHHHHHH----HHHHHHhccccccHHHHHHHHHHHH------HHHhcCHHHHHHHHHHh
Confidence            333          568999998887511    1122211221    12223333333      56679999999988876


Q ss_pred             HHcCC--CCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHC----CCC
Q 002846          311 ENLGQ--FSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD----EVP  384 (874)
Q Consensus       311 ~~~Gi--~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~----Gv~  384 (874)
                      ....-  .+..  .       +.           .+           ..+-..+...|+.++|.+.++.....    +..
T Consensus       600 l~~~~~~~~~~--~-------~~-----------~~-----------~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~  648 (903)
T PRK04841        600 LEVLSNYQPQQ--Q-------LQ-----------CL-----------AMLAKISLARGDLDNARRYLNRLENLLGNGRYH  648 (903)
T ss_pred             HHhhhccCchH--H-------HH-----------HH-----------HHHHHHHHHcCCHHHHHHHHHHHHHHHhccccc
Confidence            54311  0110  0       00           01           33344566789999999998887542    111


Q ss_pred             CCH-HHH-HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc---ccHHHHHHHHHhCCChhHHHHHHHHHHHc----CCCC
Q 002846          385 MNE-ASL-TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL---RSYGPALSVFCNNGDVDKACSVEEHMLEH----GVYP  455 (874)
Q Consensus       385 Pd~-~ty-n~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~---~tYn~LI~a~~k~G~~~~A~~l~~eM~~~----Gv~P  455 (874)
                      ... ... ...+..+...|+.+.|..++............   ..+..+-..+...|+.++|..+++.....    |..+
T Consensus       649 ~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~  728 (903)
T PRK04841        649 SDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMS  728 (903)
T ss_pred             HhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchH
Confidence            111 111 11234456689999999998765432111110   01234556677889999999999887643    4333


Q ss_pred             C-HHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          456 E-EPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       456 d-~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      + ..++..+-.++.+.|+.++|...|.+....
T Consensus       729 ~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l  760 (903)
T PRK04841        729 DLNRNLILLNQLYWQQGRKSEAQRVLLEALKL  760 (903)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            2 234555666778899999999999988765

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.59  E-value=2.6  Score=48.64  Aligned_cols=122  Identities=16%  Similarity=0.206  Sum_probs=89.5

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----cccHHHHHH-H---
Q 002846          360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LRSYGPALS-V---  431 (874)
Q Consensus       360 ~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd----~~tYn~LI~-a---  431 (874)
                      -+..|.+++++++..|++-+++ ++--.-.||-....+...++++.|.+.|+.....  .|+    .+.-.++|+ +   
T Consensus       436 ~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV~Ka~l~  512 (606)
T KOG0547|consen  436 CALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLVHKALLV  512 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccchhhhhhhHhh
Confidence            3444778999999999998876 3445678898999999999999999999976653  333    111112221 1   


Q ss_pred             HHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          432 FCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       432 ~~k~G~~~~A~~l~~eM~~~Gv~P-d~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      +-=.+++..|.+++....+..  | ....|.+|-..-.+.|++++|+++|++-..-
T Consensus       513 ~qwk~d~~~a~~Ll~KA~e~D--pkce~A~~tlaq~~lQ~~~i~eAielFEksa~l  566 (606)
T KOG0547|consen  513 LQWKEDINQAENLLRKAIELD--PKCEQAYETLAQFELQRGKIDEAIELFEKSAQL  566 (606)
T ss_pred             hchhhhHHHHHHHHHHHHccC--chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            112389999999998887643  3 4567888988899999999999999986543

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.52  E-value=1  Score=48.22  Aligned_cols=137  Identities=15%  Similarity=0.152  Sum_probs=99.2

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHh----C
Q 002846          360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN----N  435 (874)
Q Consensus       360 ~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k----~  435 (874)
                      .-|++.|+.++|++..+.    |-..+....+  +..+.+..++|.|.+.++.|.+-   -+..|.+-|-.++.+    .
T Consensus       116 ~i~~~~~~~deAl~~~~~----~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gg  186 (299)
T KOG3081|consen  116 IIYMHDGDFDEALKALHL----GENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGG  186 (299)
T ss_pred             HHhhcCCChHHHHHHHhc----cchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccc
Confidence            457899999999999876    2122333333  34456777899999999999875   355566655555544    4


Q ss_pred             CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCChhH-HHHHHHHHhcchH
Q 002846          436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPST-ADVIAKWFNSKEA  507 (874)
Q Consensus       436 G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~T-~~~I~~~~~s~~~  507 (874)
                      +.+.+|+-+|++|-++ ..|+..+.+-+..++...|++++|..++.+...+.-.. |+| .|.|....-.|+.
T Consensus       187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d-petL~Nliv~a~~~Gkd  257 (299)
T KOG3081|consen  187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD-PETLANLIVLALHLGKD  257 (299)
T ss_pred             hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhCCC
Confidence            6899999999999863 46999999999999999999999999999998873332 443 4555544444443

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=93.46  E-value=1.5  Score=52.29  Aligned_cols=160  Identities=11%  Similarity=0.031  Sum_probs=99.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCC
Q 002846          196 VELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDM  275 (874)
Q Consensus       196 ~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi  275 (874)
                      ..|.+...+..+..|+.+++.+.......  .-|.-+-+-|+          ..|.++.|.++|-       +       
T Consensus       737 kaieaai~akew~kai~ildniqdqk~~s--~yy~~iadhya----------n~~dfe~ae~lf~-------e-------  790 (1636)
T KOG3616|consen  737 KAIEAAIGAKEWKKAISILDNIQDQKTAS--GYYGEIADHYA----------NKGDFEIAEELFT-------E-------  790 (1636)
T ss_pred             HHHHHHhhhhhhhhhHhHHHHhhhhcccc--ccchHHHHHhc----------cchhHHHHHHHHH-------h-------
Confidence            34455566677777888887776544322  23444444555          8899999999994       1       


Q ss_pred             CchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeec--------cccHHHHHHhhhcC-CCCcccccc
Q 002846          276 DNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL--------NSQLLDGRSNLERG-PDDQSRKKD  346 (874)
Q Consensus       276 ~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~--------~g~~~eA~~l~~~m-~pd~~ty~~  346 (874)
                        .--++-.|..      |.+.|++++|.++-.+..  |-....+.|-        .|+..+|..++-.+ .|       
T Consensus       791 --~~~~~dai~m------y~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p-------  853 (1636)
T KOG3616|consen  791 --ADLFKDAIDM------YGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEP-------  853 (1636)
T ss_pred             --cchhHHHHHH------HhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCc-------
Confidence              1124445566      999999999999876543  3344555564        78888888876554 44       


Q ss_pred             cccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 002846          347 WSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMV  410 (874)
Q Consensus       347 w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~  410 (874)
                               ...|.+|-+.|..++.+++.++-.-.-+   .-|--.+..-|-..|++..|..-|
T Consensus       854 ---------~~aiqmydk~~~~ddmirlv~k~h~d~l---~dt~~~f~~e~e~~g~lkaae~~f  905 (1636)
T KOG3616|consen  854 ---------DKAIQMYDKHGLDDDMIRLVEKHHGDHL---HDTHKHFAKELEAEGDLKAAEEHF  905 (1636)
T ss_pred             ---------hHHHHHHHhhCcchHHHHHHHHhChhhh---hHHHHHHHHHHHhccChhHHHHHH
Confidence                     4556788888888888877765321111   123333444455556665555544

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=93.42  E-value=1.7  Score=39.68  Aligned_cols=94  Identities=10%  Similarity=-0.024  Sum_probs=73.9

Q ss_pred             hHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----cccHHHHHH
Q 002846          357 IRLSEDAKKYAFQRGFEIYEKMCLDEV--PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LRSYGPALS  430 (874)
Q Consensus       357 ~lI~~~~k~g~~~~A~~lf~~M~~~Gv--~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd----~~tYn~LI~  430 (874)
                      .+...+.+.|+.++|.+.|+.+....-  ......+..+...+.+.|+++.|...|+.+....  |+    ...+..+-.
T Consensus         7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~~~   84 (119)
T TIGR02795         7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY--PKSPKAPDALLKLGM   84 (119)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC--CCCCcccHHHHHHHH
Confidence            445667789999999999999987531  1123466779999999999999999999988652  33    345666677


Q ss_pred             HHHhCCChhHHHHHHHHHHHcC
Q 002846          431 VFCNNGDVDKACSVEEHMLEHG  452 (874)
Q Consensus       431 a~~k~G~~~~A~~l~~eM~~~G  452 (874)
                      .+.+.|+.++|...++++.+..
T Consensus        85 ~~~~~~~~~~A~~~~~~~~~~~  106 (119)
T TIGR02795        85 SLQELGDKEKAKATLQQVIKRY  106 (119)
T ss_pred             HHHHhCChHHHHHHHHHHHHHC
Confidence            8889999999999999998864

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=93.38  E-value=23  Score=42.60  Aligned_cols=187  Identities=16%  Similarity=0.173  Sum_probs=109.3

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChh
Q 002846          360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD  439 (874)
Q Consensus       360 ~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~  439 (874)
                      ..+..+|++..|..++....+.. +-++-.|-+-++.-..+..++.|..+|.+-..  ..|..+.|.--+...--.++.+
T Consensus       592 ke~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~e  668 (913)
T KOG0495|consen  592 KEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVE  668 (913)
T ss_pred             HHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHH
Confidence            44555667777777766666543 22566666666666666677777777665443  3455555554444444455666


Q ss_pred             HHHHHHHHHHHc------------------------------C--CCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          440 KACSVEEHMLEH------------------------------G--VYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       440 ~A~~l~~eM~~~------------------------------G--v~P-d~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      +|.+++++-.+.                              |  ..| .+..|-.|-+.=-+.|.+.+|..+|++-+-+
T Consensus       669 eA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk  748 (913)
T KOG0495|consen  669 EALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK  748 (913)
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence            666555443221                              1  123 3344555555555677888888888887766


Q ss_pred             CCCCChh-HH-HHHHHHHhcchHHHhhhhhchhHHHHHHHh---hcCCcccccccCCCCCceeEeeccccccccccc
Q 002846          487 VRKVSPS-TA-DVIAKWFNSKEAARLGKKKWNESLIKDTME---NKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCC  558 (874)
Q Consensus       487 ~~~~sp~-T~-~~I~~~~~s~~~~~a~~~~~d~~~v~ea~~---~~G~~~~~m~~~G~~p~~vt~t~vl~~G~C~~c  558 (874)
                        .|.-. .| ..|.--.+.|....|.      .++..|++   .+|-+|.+..|+-..|..-+- +++.--.|..-
T Consensus       749 --NPk~~~lwle~Ir~ElR~gn~~~a~------~lmakALQecp~sg~LWaEaI~le~~~~rkTk-s~DALkkce~d  816 (913)
T KOG0495|consen  749 --NPKNALLWLESIRMELRAGNKEQAE------LLMAKALQECPSSGLLWAEAIWLEPRPQRKTK-SIDALKKCEHD  816 (913)
T ss_pred             --CCCcchhHHHHHHHHHHcCCHHHHH------HHHHHHHHhCCccchhHHHHHHhccCcccchH-HHHHHHhccCC
Confidence              55444 44 3366666666554443      34455555   457788888888888877655 34443455443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=93.32  E-value=1.9  Score=53.15  Aligned_cols=125  Identities=10%  Similarity=-0.039  Sum_probs=101.0

Q ss_pred             chHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHH-HHHHH
Q 002846          356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA-LSVFC  433 (874)
Q Consensus       356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~P-d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~L-I~a~~  433 (874)
                      -.|-......|+.++|..+++...+.  .| +......+...+.+.+++++|....++....  .|+..+.-.+ =.++.
T Consensus        90 ~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~  165 (694)
T PRK15179         90 VLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKSWD  165 (694)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHH
Confidence            34446667789999999999998875  45 4667788999999999999999999998765  4665555444 45566


Q ss_pred             hCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          434 NNGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       434 k~G~~~~A~~l~~eM~~~Gv~Pd-~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      +.|+.++|.++|+.....+  |+ ...+..+=..+-..|+.++|...|+.-.+.
T Consensus       166 ~~g~~~~A~~~y~~~~~~~--p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~  217 (694)
T PRK15179        166 EIGQSEQADACFERLSRQH--PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA  217 (694)
T ss_pred             HhcchHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            8899999999999999843  44 678888888889999999999999988664

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=93.25  E-value=2.2  Score=45.50  Aligned_cols=124  Identities=11%  Similarity=0.003  Sum_probs=97.2

Q ss_pred             chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhC
Q 002846          356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN  435 (874)
Q Consensus       356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~  435 (874)
                      +..+....+.|++.+|...|.+...- -++|..+||.+--+|.+.|+.++|..-|.+..+.-. -+...+|.|--.|.-.
T Consensus       104 ~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~  181 (257)
T COG5010         104 AAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP-NEPSIANNLGMSLLLR  181 (257)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHc
Confidence            34566777889999999999987754 378999999999999999999999999988776521 2345567777778889


Q ss_pred             CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHH
Q 002846          436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK  482 (874)
Q Consensus       436 G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~  482 (874)
                      |+.+.|..++......+-. |...-.-|.-+....|++++|..+-..
T Consensus       182 gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~~  227 (257)
T COG5010         182 GDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAVQ  227 (257)
T ss_pred             CCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhccc
Confidence            9999999999988876532 555556666677888999999887654

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=93.12  E-value=1.9  Score=52.27  Aligned_cols=216  Identities=13%  Similarity=0.017  Sum_probs=119.2

Q ss_pred             HHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCC--------CC-HHHH
Q 002846          160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQR-EGIK--------LG-QYHY  229 (874)
Q Consensus       160 ~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~-~Gi~--------pd-~~ty  229 (874)
                      +...|+.+.|++-..-+      +..      ..|.-|-..|.+..+++-|.-.+..|.. .|.+        |+ ...-
T Consensus       738 yvtiG~MD~AfksI~~I------kS~------~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eak  805 (1416)
T KOG3617|consen  738 YVTIGSMDAAFKSIQFI------KSD------SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAK  805 (1416)
T ss_pred             EEEeccHHHHHHHHHHH------hhh------HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhH
Confidence            34567788888887777      223      8999999999999999998888887763 2322        11 1111


Q ss_pred             HHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHH
Q 002846          230 NVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNE  309 (874)
Q Consensus       230 n~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~e  309 (874)
                      .++   ++-         ..|.+++|..++.       .-.         -|..|-+-      |-..|.+++|+++-+.
T Consensus       806 vAv---LAi---------eLgMlEeA~~lYr-------~ck---------R~DLlNKl------yQs~g~w~eA~eiAE~  851 (1416)
T KOG3617|consen  806 VAV---LAI---------ELGMLEEALILYR-------QCK---------RYDLLNKL------YQSQGMWSEAFEIAET  851 (1416)
T ss_pred             HHH---HHH---------HHhhHHHHHHHHH-------HHH---------HHHHHHHH------HHhcccHHHHHHHHhh
Confidence            111   111         3477778887774       111         12223223      6667888888877665


Q ss_pred             HHHcCCCCCeeeec-----cccHHHHHHhhhcC------------------------CCCcccccccccccCCccchHHH
Q 002846          310 KENLGQFSNGHMKL-----NSQLLDGRSNLERG------------------------PDDQSRKKDWSIDNQDADEIRLS  360 (874)
Q Consensus       310 M~~~Gi~Pd~~ty~-----~g~~~eA~~l~~~m------------------------~pd~~ty~~w~i~~~~~~n~lI~  360 (874)
                      -.+-.+...-+-|.     .+++..|++.|++-                        ..|...|           .=+=.
T Consensus       852 ~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~-----------~WWgq  920 (1416)
T KOG3617|consen  852 KDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLY-----------SWWGQ  920 (1416)
T ss_pred             ccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHH-----------HHHHH
Confidence            44444443333333     44455555555443                        1122222           00112


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhH
Q 002846          361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK  440 (874)
Q Consensus       361 ~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~  440 (874)
                      .+-..|+++.|+.+|..-++         |=++++..|-.|+.++|-++-++-.      |....-.|-..|-..|++.+
T Consensus       921 YlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~  985 (1416)
T KOG3617|consen  921 YLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVK  985 (1416)
T ss_pred             HHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHH
Confidence            23346777777777776553         4456666666666666666655421      22222235555555666666


Q ss_pred             HHHHHHH
Q 002846          441 ACSVEEH  447 (874)
Q Consensus       441 A~~l~~e  447 (874)
                      |..+|-.
T Consensus       986 Av~FfTr  992 (1416)
T KOG3617|consen  986 AVKFFTR  992 (1416)
T ss_pred             HHHHHHH
Confidence            6655543

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=93.02  E-value=1.2  Score=50.46  Aligned_cols=88  Identities=14%  Similarity=0.047  Sum_probs=48.7

Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCch
Q 002846          396 MAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGD  474 (874)
Q Consensus       396 ~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~P-d~~ty~~LI~~~~~~G~~d  474 (874)
                      .+...|++++|.++|++..+..- -+...|..+-.+|.+.|++++|...++......  | +...|..+-.+|...|+++
T Consensus        11 ~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~~~lg~~~   87 (356)
T PLN03088         11 EAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTACMKLEEYQ   87 (356)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhCCHH
Confidence            34455556666666655554311 123344444455556666666666666655532  3 3445555555666667777


Q ss_pred             HHHHHHHHHHhc
Q 002846          475 RVYYLLHKLRTS  486 (874)
Q Consensus       475 ~A~~ll~~M~~~  486 (874)
                      +|...|++....
T Consensus        88 eA~~~~~~al~l   99 (356)
T PLN03088         88 TAKAALEKGASL   99 (356)
T ss_pred             HHHHHHHHHHHh
Confidence            777777666654

>KOG3777 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.94  E-value=0.052  Score=61.92  Aligned_cols=103  Identities=17%  Similarity=0.179  Sum_probs=76.1

Q ss_pred             CcchhhhhhhhhccccC--CCChhhHHHHHHHHHHhCCCCCceEEEeccccccCCCCCChhhHHHHHHHHhcCceEecCC
Q 002846          604 PFEAVVDAANVGLYSQR--NFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPT  681 (874)
Q Consensus       604 pyDiVIDGaNv~~~~~~--~f~~~~l~~vv~~l~~~~~~~~~~lvvl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tp~  681 (874)
                      -+-++|||-|||+-..|  -|+...+...+.++.++.. +. .-+++...|-.   +..|.+  ++.++.+...+-+||.
T Consensus        12 ~~P~~i~~~~~~ls~G~~~~f~~r~~~v~~~~~~~~~~-rd-~tv~~~~~r~e---~~~p~~--~l~~l~~~~~~~ftp~   84 (443)
T KOG3777|consen   12 LRPVVIHGSNLALSQGNEEVFSCRGILVSVDWFLQRGH-RD-ITVLVPSWRKE---ATRPDA--ILRELEEKKILVFTPD   84 (443)
T ss_pred             ccCceeeccchhhcccchhheecccceeehhhhhhhcc-cC-cchhchhhhhc---CCchHH--HHHHHHhccccccCCC
Confidence            35689999999986654  4677788888888887322 22 33444443322   224443  7788888888888987


Q ss_pred             C--------CCccHHHHHHHHhcCceEEeCcccccccccc
Q 002846          682 G--------SNDDWYWLYAAIKFKCLLVTNDEMRDHTFQL  713 (874)
Q Consensus       682 ~--------s~DD~y~LyAa~~~~~~~vsnD~mRdH~~~l  713 (874)
                      .        ..||||+.--|.+.+..|++||..||..-+.
T Consensus        85 ~~~~~~r~~c~~~rf~~~~~~~s~~~~~~~dn~rd~~le~  124 (443)
T KOG3777|consen   85 RSIQGSRVICYDRRFSASLARESDGIVSLNDNYRDLILES  124 (443)
T ss_pred             hhhccceeeeehhhhHhhhhccccceecCCchHHHHHhhc
Confidence            6        7999999999999999999999999987743

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=92.81  E-value=15  Score=46.55  Aligned_cols=127  Identities=17%  Similarity=0.121  Sum_probs=86.7

Q ss_pred             chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHH---HH
Q 002846          356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS---VF  432 (874)
Q Consensus       356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~---a~  432 (874)
                      -.+-.+|-+.|+.++|..+++++.+.. .-|..+.|-+.-.|+.. ++++|.+++.+....-+  +..-|+.+..   -+
T Consensus       120 ~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i--~~kq~~~~~e~W~k~  195 (906)
T PRK14720        120 RTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI--KKKQYVGIEEIWSKL  195 (906)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH--hhhcchHHHHHHHHH
Confidence            345567778899999999999999877 55788899999999999 99999999887665511  2223333222   22


Q ss_pred             HhC--CChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          433 CNN--GDVDKACSVEEHMLEH-GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       433 ~k~--G~~~~A~~l~~eM~~~-Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      |..  .+++.-..+.+.+... |..--..++-.|-..|-...+++++..+|..+.+.
T Consensus       196 ~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~  252 (906)
T PRK14720        196 VHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH  252 (906)
T ss_pred             HhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc
Confidence            221  2333334444444433 44445556666677788888899999999999887

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=92.66  E-value=23  Score=41.11  Aligned_cols=218  Identities=12%  Similarity=0.040  Sum_probs=142.8

Q ss_pred             ChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCC
Q 002846          165 NDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVV  244 (874)
Q Consensus       165 ~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~  244 (874)
                      +..++...-+.|    ...+....|+...+...|.+......-..+-.++.+-.+.+  -..--|..-|.-|        
T Consensus       252 RIa~lr~ra~q~----p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~aa~YG~A~~~~--------  317 (484)
T COG4783         252 RIADLRNRAEQS----PPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKRG--GLAAQYGRALQTY--------  317 (484)
T ss_pred             HHHHHHHHHHhC----CCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCcc--chHHHHHHHHHHH--------
Confidence            444555555555    22344456777777888877666555544444444433311  1223444444444        


Q ss_pred             cccCCCCHHHHHHHHhhcccCchhhhhcCCCC-chhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeec
Q 002846          245 KPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL  323 (874)
Q Consensus       245 ~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~-d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~  323 (874)
                         ..|..++|+..+.       ++..  ..+ |..-+.....-      +.+.++..+|.+.++.+...  .|+...  
T Consensus       318 ---~~~~~d~A~~~l~-------~L~~--~~P~N~~~~~~~~~i------~~~~nk~~~A~e~~~kal~l--~P~~~~--  375 (484)
T COG4783         318 ---LAGQYDEALKLLQ-------PLIA--AQPDNPYYLELAGDI------LLEANKAKEAIERLKKALAL--DPNSPL--  375 (484)
T ss_pred             ---HhcccchHHHHHH-------HHHH--hCCCCHHHHHHHHHH------HHHcCChHHHHHHHHHHHhc--CCCccH--
Confidence               3577888888885       4544  344 44445555555      77888899999888888775  233211  


Q ss_pred             cccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 002846          324 NSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDG  403 (874)
Q Consensus       324 ~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~  403 (874)
                                         .+           -.+=..|.+.|+..+|..+++.-.... +-|...|..|.++|...|+.
T Consensus       376 -------------------l~-----------~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~  424 (484)
T COG4783         376 -------------------LQ-----------LNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNR  424 (484)
T ss_pred             -------------------HH-----------HHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCch
Confidence                               11           233467888999999999999887653 66889999999999999999


Q ss_pred             hHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHH
Q 002846          404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG--VYPEEPELEALLRVS  467 (874)
Q Consensus       404 d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~G--v~Pd~~ty~~LI~~~  467 (874)
                      .+|..-..++                  |...|+++.|...+....+..  -.|+..-|...|+..
T Consensus       425 ~~a~~A~AE~------------------~~~~G~~~~A~~~l~~A~~~~~~~~~~~aR~dari~~~  472 (484)
T COG4783         425 AEALLARAEG------------------YALAGRLEQAIIFLMRASQQVKLGFPDWARADARIDQL  472 (484)
T ss_pred             HHHHHHHHHH------------------HHhCCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence            9998877664                  556799999999888776652  235555555555544

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=92.56  E-value=0.91  Score=49.70  Aligned_cols=181  Identities=10%  Similarity=-0.009  Sum_probs=107.3

Q ss_pred             hhhcCChHHHHHHHHHHHHcCCCCCeeeec------cccHHHHHHhhhcC---CCCcccccccccccCCccchHHHHHHh
Q 002846          294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKL------NSQLLDGRSNLERG---PDDQSRKKDWSIDNQDADEIRLSEDAK  364 (874)
Q Consensus       294 ~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~------~g~~~eA~~l~~~m---~pd~~ty~~w~i~~~~~~n~lI~~~~k  364 (874)
                      |-+.|.+.+|...|..-...--.||.+.|-      ..+.+.|+.++.+.   .|-.+||-          .-+-.-+-.
T Consensus       233 ylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l----------~g~ARi~ea  302 (478)
T KOG1129|consen  233 YLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYL----------LGQARIHEA  302 (478)
T ss_pred             HHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhh----------hhhHHHHHH
Confidence            788888999988888777765556655443      44555566666655   45555550          111122233


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHH
Q 002846          365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSV  444 (874)
Q Consensus       365 ~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l  444 (874)
                      .++.++|.++++...+.. ..++....++...|.-.++++.|+..++++.+.|+. +..-|+.+=-+|.-.+.+|-++--
T Consensus       303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s  380 (478)
T KOG1129|consen  303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS  380 (478)
T ss_pred             HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence            456667777776655432 335555666666677777777777777777777763 444455444444456667777666


Q ss_pred             HHHHHHcCCCCCH--HHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          445 EEHMLEHGVYPEE--PELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       445 ~~eM~~~Gv~Pd~--~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      |+.....--.|+.  ..|--|=......|++.-|.+.|+--..+
T Consensus       381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~  424 (478)
T KOG1129|consen  381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS  424 (478)
T ss_pred             HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc
Confidence            6665544333332  23444444445667777777777666555

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.46  E-value=29  Score=41.31  Aligned_cols=136  Identities=13%  Similarity=0.190  Sum_probs=87.8

Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH--------HHHHCCCCCCcccHHHHHHHHHhCCCh
Q 002846          367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVK--------RMKSLGINPRLRSYGPALSVFCNNGDV  438 (874)
Q Consensus       367 ~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~--------~M~~~Gi~Pd~~tYn~LI~a~~k~G~~  438 (874)
                      ....|.+++...-+..-.-...+--+++......|+++.|.+++.        .+.+.+..|-++.  +++..|.+.++-
T Consensus       356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~--aiv~l~~~~~~~  433 (652)
T KOG2376|consen  356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVG--AIVALYYKIKDN  433 (652)
T ss_pred             HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHH--HHHHHHHhccCC
Confidence            466677777665554322234566667777889999999999999        6666677676554  467777888888


Q ss_pred             hHHHHHHHHHHHc--CCCCCHHHHHHHHHH----HHhcCCchHHHHHHHHHHhcCCCCChhHH-HHHHHHHhcc
Q 002846          439 DKACSVEEHMLEH--GVYPEEPELEALLRV----SVEAGKGDRVYYLLHKLRTSVRKVSPSTA-DVIAKWFNSK  505 (874)
Q Consensus       439 ~~A~~l~~eM~~~--Gv~Pd~~ty~~LI~~----~~~~G~~d~A~~ll~~M~~~~~~~sp~T~-~~I~~~~~s~  505 (874)
                      +.|-.++++....  .-.+......+++.-    =.+.|..++|..+++++.... +.+.++. ..+.+++.-.
T Consensus       434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d  506 (652)
T KOG2376|consen  434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLD  506 (652)
T ss_pred             ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcC
Confidence            8888888776532  111222333333333    357899999999999999851 2222233 3355655543

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.29  E-value=8  Score=48.26  Aligned_cols=252  Identities=10%  Similarity=0.025  Sum_probs=154.1

Q ss_pred             HHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcccCCCccc
Q 002846          170 YKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQRE--GIKLGQYHYNVLLYLCSSAAVGVVKPA  247 (874)
Q Consensus       170 ~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~--Gi~pd~~tyn~LL~a~~~~~~~~~~~~  247 (874)
                      +.+.+..+..+.....    |...-...+.++..++-..+-++++++..-.  -+.-+.-.-|.||-...++.       
T Consensus       967 RqLiDqVv~tal~E~~----dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad------- 1035 (1666)
T KOG0985|consen  967 RQLIDQVVQTALPETQ----DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKAD------- 1035 (1666)
T ss_pred             HHHHHHHHHhcCCccC----ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcC-------
Confidence            3455555555543322    3334456678888999999999999998732  22223333344443333221       


Q ss_pred             CCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccH
Q 002846          248 KSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQL  327 (874)
Q Consensus       248 k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~  327 (874)
                          -.+..+...        -.+..+.++.  -++          ...++..++|+.+|+...-.+-.-++..-+-+.+
T Consensus      1036 ----~trVm~YI~--------rLdnyDa~~i--a~i----------ai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~l 1091 (1666)
T KOG0985|consen 1036 ----RTRVMEYIN--------RLDNYDAPDI--AEI----------AIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSL 1091 (1666)
T ss_pred             ----hHHHHHHHH--------HhccCCchhH--HHH----------HhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhH
Confidence                112222221        0111111111  111          2344567888888875433221111111114556


Q ss_pred             HHHHHhhhcC-CCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 002846          328 LDGRSNLERG-PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMA  406 (874)
Q Consensus       328 ~eA~~l~~~m-~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A  406 (874)
                      +.|.++-++. +|.  .|           +.+-.+-.+.|.+.+|.+-|-+-      -|...|.-+|+.+.+.|.+++-
T Consensus      1092 dRA~efAe~~n~p~--vW-----------sqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edL 1152 (1666)
T KOG0985|consen 1092 DRAYEFAERCNEPA--VW-----------SQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDL 1152 (1666)
T ss_pred             HHHHHHHHhhCChH--HH-----------HHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHH
Confidence            6666665555 443  34           66777777888998988877442      3778999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 002846          407 FDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR  484 (874)
Q Consensus       407 ~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~  484 (874)
                      ...+...++..-.|.+.  +.||-+|++.+++.+..++..       -||......+=+-|...|.++.|.-++....
T Consensus      1153 v~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS 1221 (1666)
T KOG0985|consen 1153 VKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVS 1221 (1666)
T ss_pred             HHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhh
Confidence            99887777777777665  469999999999877666552       2777777777777777777777766665543

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=92.09  E-value=0.35  Score=40.22  Aligned_cols=19  Identities=21%  Similarity=0.408  Sum_probs=6.8

Q ss_pred             HHHHhCCChhHHHHHHHHH
Q 002846          430 SVFCNNGDVDKACSVEEHM  448 (874)
Q Consensus       430 ~a~~k~G~~~~A~~l~~eM  448 (874)
                      .+|.+.|++++|.++++.+
T Consensus        33 ~~~~~~g~~~~A~~~l~~~   51 (68)
T PF14559_consen   33 QCYLKQGQYDEAEELLERL   51 (68)
T ss_dssp             HHHHHTT-HHHHHHHHHCC
T ss_pred             HHHHHcCCHHHHHHHHHHH
Confidence            3333333333333333333

...

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=92.03  E-value=1.5  Score=42.73  Aligned_cols=86  Identities=12%  Similarity=0.132  Sum_probs=64.7

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCC
Q 002846          360 SEDAKKYAFQRGFEIYEKMCLDEVPMNE--ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD  437 (874)
Q Consensus       360 ~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~--~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~  437 (874)
                      ..+...|++++|...|+........|+.  ...-.|...+...|++++|+..++.......  ....+...=..|.+.|+
T Consensus        56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~  133 (145)
T PF09976_consen   56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGD  133 (145)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCC
Confidence            6677889999999999999987733322  2344577888899999999999977443332  22344455577889999


Q ss_pred             hhHHHHHHHH
Q 002846          438 VDKACSVEEH  447 (874)
Q Consensus       438 ~~~A~~l~~e  447 (874)
                      .++|...|+.
T Consensus       134 ~~~A~~~y~~  143 (145)
T PF09976_consen  134 YDEARAAYQK  143 (145)
T ss_pred             HHHHHHHHHH
Confidence            9999999875

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=91.98  E-value=2.5  Score=43.70  Aligned_cols=107  Identities=11%  Similarity=0.077  Sum_probs=82.7

Q ss_pred             chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--hhHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 002846          356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMA-MSMGD--GDMAFDMVKRMKSLGINPRLRSYGPALSVF  432 (874)
Q Consensus       356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~-~~~G~--~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~  432 (874)
                      ..+-..|...|+.++|...|+...... +-|...+..+..++ ...|+  .++|.+++++..+..- -+...+..+-..+
T Consensus        77 ~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP-~~~~al~~LA~~~  154 (198)
T PRK10370         77 ALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA-NEVTALMLLASDA  154 (198)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-CChhHHHHHHHHH
Confidence            666677889999999999999888764 33677888888764 67777  5999999999987742 2567777788888


Q ss_pred             HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002846          433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV  466 (874)
Q Consensus       433 ~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~  466 (874)
                      .+.|++++|...|+.+.+.. .|+..-+ .+|..
T Consensus       155 ~~~g~~~~Ai~~~~~aL~l~-~~~~~r~-~~i~~  186 (198)
T PRK10370        155 FMQADYAQAIELWQKVLDLN-SPRVNRT-QLVES  186 (198)
T ss_pred             HHcCCHHHHHHHHHHHHhhC-CCCccHH-HHHHH
Confidence            99999999999999998753 3454443 34343

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=91.78  E-value=11  Score=42.17  Aligned_cols=107  Identities=9%  Similarity=-0.027  Sum_probs=66.0

Q ss_pred             chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhC
Q 002846          356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN  435 (874)
Q Consensus       356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~  435 (874)
                      +..|.-+...|....|.++..+.+    .||..-|-..|++++..+++++-.++-..    .-  ...-|-+.+.+|.+.
T Consensus       181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~~~~  250 (319)
T PF04840_consen  181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEACLKY  250 (319)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHHHHC
Confidence            344555666677666666655443    46777777777777777777765554322    11  236777777777777


Q ss_pred             CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHH
Q 002846          436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK  482 (874)
Q Consensus       436 G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~  482 (874)
                      |+..+|..+...+          ++..-+..|.++|++.+|.+.--+
T Consensus       251 ~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~  287 (319)
T PF04840_consen  251 GNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK  287 (319)
T ss_pred             CCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence            7777777666551          124555666777777776655433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.55  E-value=11  Score=47.07  Aligned_cols=196  Identities=12%  Similarity=0.069  Sum_probs=112.9

Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhh
Q 002846          205 GDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYG  284 (874)
Q Consensus       205 G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~L  284 (874)
                      +.+++|.++-++-.      .+..|+.|-.|-.          ..|.+.+|.+-|-             ...|.-.|--+
T Consensus      1089 ~~ldRA~efAe~~n------~p~vWsqlakAQL----------~~~~v~dAieSyi-------------kadDps~y~eV 1139 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCN------EPAVWSQLAKAQL----------QGGLVKDAIESYI-------------KADDPSNYLEV 1139 (1666)
T ss_pred             hhHHHHHHHHHhhC------ChHHHHHHHHHHH----------hcCchHHHHHHHH-------------hcCCcHHHHHH
Confidence            45555555544322      2345555555555          5567777777662             22255568888


Q ss_pred             hcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHh
Q 002846          285 SSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAK  364 (874)
Q Consensus       285 I~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k  364 (874)
                      |+.      ..+.|.+++-...+...+.+.-+|.+-                                   +.||-+|++
T Consensus      1140 i~~------a~~~~~~edLv~yL~MaRkk~~E~~id-----------------------------------~eLi~AyAk 1178 (1666)
T KOG0985|consen 1140 IDV------ASRTGKYEDLVKYLLMARKKVREPYID-----------------------------------SELIFAYAK 1178 (1666)
T ss_pred             HHH------HHhcCcHHHHHHHHHHHHHhhcCccch-----------------------------------HHHHHHHHH
Confidence            888      888888888888776666655555432                                   456667777


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--------------------CCCCCccc
Q 002846          365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL--------------------GINPRLRS  424 (874)
Q Consensus       365 ~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~--------------------Gi~Pd~~t  424 (874)
                      .+++.+-.++.       ..||..-.-.+=+-|...|.++.|.-++.....-                    .-.-+..|
T Consensus      1179 t~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~kt 1251 (1666)
T KOG0985|consen 1179 TNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKT 1251 (1666)
T ss_pred             hchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhH
Confidence            77665554443       1245555555555555555555555444321100                    01134556


Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHH
Q 002846          425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK  482 (874)
Q Consensus       425 Yn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~  482 (874)
                      |--+-.+|...+.+.-|     .|-.-.+.-......-||.-|-..|.+++...+++.
T Consensus      1252 WK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1252 WKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred             HHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence            66666666655555433     233334455666677788888888888887777654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=91.48  E-value=7.6  Score=46.16  Aligned_cols=117  Identities=13%  Similarity=0.123  Sum_probs=70.2

Q ss_pred             HHHHHhcCCHHHHHHHHH------HHHHCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHH
Q 002846          359 LSEDAKKYAFQRGFEIYE------KMCLDEVPMN---EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL  429 (874)
Q Consensus       359 I~~~~k~g~~~~A~~lf~------~M~~~Gv~Pd---~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI  429 (874)
                      -..+..+|+.++|.++.-      .+.+-+.+.|   .-+.-.+..-+-+...+..|-++|..|-..         -.++
T Consensus       710 AEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiV  780 (1081)
T KOG1538|consen  710 AEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLV  780 (1081)
T ss_pred             HHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHh
Confidence            344455566666655432      1112122222   233334444444566677888888877543         3467


Q ss_pred             HHHHhCCChhHHHHHHHHHHHcCCCCCHH-----------HHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          430 SVFCNNGDVDKACSVEEHMLEHGVYPEEP-----------ELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       430 ~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~-----------ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      ......+++.+|+.+-+...+  +.||+.           -|.---.+|-++|+..+|.++++++..+
T Consensus       781 qlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn  846 (1081)
T KOG1538|consen  781 QLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN  846 (1081)
T ss_pred             hheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence            777888899999888877655  334332           2334446677888888888888887765

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=91.43  E-value=0.77  Score=49.34  Aligned_cols=86  Identities=10%  Similarity=-0.003  Sum_probs=70.3

Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----------------ChhHHHHHHHHHHHCCCCCCcccHHHH
Q 002846          365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG----------------DGDMAFDMVKRMKSLGINPRLRSYGPA  428 (874)
Q Consensus       365 ~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G----------------~~d~A~~l~~~M~~~Gi~Pd~~tYn~L  428 (874)
                      .+.++-...-++.|++-|+.-|..+|+.||+.+-+..                .-+-+.+++++|...|+.||-.+-..|
T Consensus        85 R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~l  164 (406)
T KOG3941|consen   85 RTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDIL  164 (406)
T ss_pred             cchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHH
Confidence            4567777888899999999999999999999876533                234588999999999999999999999


Q ss_pred             HHHHHhCCC-hhHHHHHHHHHHH
Q 002846          429 LSVFCNNGD-VDKACSVEEHMLE  450 (874)
Q Consensus       429 I~a~~k~G~-~~~A~~l~~eM~~  450 (874)
                      |.+|.+.+- +.+..++.--|.+
T Consensus       165 vn~FGr~~~p~~K~~Rm~yWmPk  187 (406)
T KOG3941|consen  165 VNAFGRWNFPTKKVKRMLYWMPK  187 (406)
T ss_pred             HHHhccccccHHHHHHHHHhhhh
Confidence            999999885 3445555555544

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.32  E-value=12  Score=40.76  Aligned_cols=297  Identities=9%  Similarity=-0.001  Sum_probs=162.8

Q ss_pred             HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHH
Q 002846          159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYN--VLLYLC  236 (874)
Q Consensus       159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn--~LL~a~  236 (874)
                      .+.+..+..+|.+++..--+... +      +......|=..|-..-++..|-..|+.+...  -|...-|-  -.-+.|
T Consensus        19 ~lI~d~ry~DaI~~l~s~~Er~p-~------~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY   89 (459)
T KOG4340|consen   19 RLIRDARYADAIQLLGSELERSP-R------SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY   89 (459)
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCc-c------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence            44566778888888877633221 1      3366777777888889999999999988754  23333222  111111


Q ss_pred             HhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCC-chhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcC-
Q 002846          237 SSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG-  314 (874)
Q Consensus       237 ~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~-d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~G-  314 (874)
                                 +.+.+.+|+.+..       .|.+...+. -++-.-+.|.-        ..+++-.+..+.++....| 
T Consensus        90 -----------~A~i~ADALrV~~-------~~~D~~~L~~~~lqLqaAIkY--------se~Dl~g~rsLveQlp~en~  143 (459)
T KOG4340|consen   90 -----------KACIYADALRVAF-------LLLDNPALHSRVLQLQAAIKY--------SEGDLPGSRSLVEQLPSENE  143 (459)
T ss_pred             -----------HhcccHHHHHHHH-------HhcCCHHHHHHHHHHHHHHhc--------ccccCcchHHHHHhccCCCc
Confidence                       3455667777763       222210010 11112222222        3455555555555554332 


Q ss_pred             ----CCCCeeeeccccHHHHHHhhhcC-----CCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCC-
Q 002846          315 ----QFSNGHMKLNSQLLDGRSNLERG-----PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVP-  384 (874)
Q Consensus       315 ----i~Pd~~ty~~g~~~eA~~l~~~m-----~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~-  384 (874)
                          +.-...-|..|+.+.|...|...     -...+.|           |..+.-| +.++.+.|+++..++.++|+. 
T Consensus       144 Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAY-----------niALaHy-~~~qyasALk~iSEIieRG~r~  211 (459)
T KOG4340|consen  144 ADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAY-----------NLALAHY-SSRQYASALKHISEIIERGIRQ  211 (459)
T ss_pred             cchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHH-----------HHHHHHH-hhhhHHHHHHHHHHHHHhhhhc
Confidence                11112233366666666666654     1223344           6655544 567889999999999988764 


Q ss_pred             ------------CCHH--------HHHHHHHH-------HHhcCChhHHHHHHHHHHHCC-CCCCcccHHHHHHHHHhCC
Q 002846          385 ------------MNEA--------SLTAVGRM-------AMSMGDGDMAFDMVKRMKSLG-INPRLRSYGPALSVFCNNG  436 (874)
Q Consensus       385 ------------Pd~~--------tyn~LI~~-------~~~~G~~d~A~~l~~~M~~~G-i~Pd~~tYn~LI~a~~k~G  436 (874)
                                  ||+.        .-++|+.+       +.+.|+.+.|.+-+-.|.-+. -..|.+|...+--.= ..+
T Consensus       212 HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~  290 (459)
T KOG4340|consen  212 HPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDA  290 (459)
T ss_pred             CCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccC
Confidence                        2321        22344443       457788888888888875332 334555554332111 123


Q ss_pred             ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCC-CCChhHHHHHHHHHhc
Q 002846          437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVR-KVSPSTADVIAKWFNS  504 (874)
Q Consensus       437 ~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~-~~sp~T~~~I~~~~~s  504 (874)
                      +..+..+-+.-+....- --..||.-|+-.||++..++-|-+++-+=...-. ..+|-.|+.+.++...
T Consensus       291 ~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~  358 (459)
T KOG4340|consen  291 RPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITC  358 (459)
T ss_pred             CccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhC
Confidence            44444444444444322 3457888888899999999999888866433211 1223345555555443

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=91.18  E-value=37  Score=40.87  Aligned_cols=58  Identities=19%  Similarity=0.115  Sum_probs=35.5

Q ss_pred             HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE-LEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       427 ~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~t-y~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      .++..|-+.|+++.|....+....+  .|+.+. |.+=-+.++.+|++++|..++++-++.
T Consensus       376 ~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el  434 (700)
T KOG1156|consen  376 FLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL  434 (700)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Confidence            3556666677777777777766653  354433 222235566677777777777776665

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=91.18  E-value=4.9  Score=40.25  Aligned_cols=111  Identities=17%  Similarity=0.172  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHH
Q 002846          387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEAL  463 (874)
Q Consensus       387 ~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd--~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd-~~ty~~L  463 (874)
                      ...|..+...+...|++++|...|++.....-.+.  ...|..+-..|.+.|+.++|...+.+....  .|+ ...+..+
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l  112 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNI  112 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHH
Confidence            34567777777888888888888888775532222  245666777788888888888888887764  243 4444455


Q ss_pred             HHHHHhcCC--------------chHHHHHHHHHHhcCCCCChhHHHHHHHHHh
Q 002846          464 LRVSVEAGK--------------GDRVYYLLHKLRTSVRKVSPSTADVIAKWFN  503 (874)
Q Consensus       464 I~~~~~~G~--------------~d~A~~ll~~M~~~~~~~sp~T~~~I~~~~~  503 (874)
                      -..+...|+              +++|.+++.+....    .|+.+..+..|.+
T Consensus       113 g~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~----~p~~~~~~~~~~~  162 (172)
T PRK02603        113 AVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL----APNNYIEAQNWLK  162 (172)
T ss_pred             HHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh----CchhHHHHHHHHH
Confidence            555555555              34555555555443    3444544555443

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=91.13  E-value=4.4  Score=47.31  Aligned_cols=127  Identities=15%  Similarity=0.127  Sum_probs=101.7

Q ss_pred             chHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHH-HHHCCCCCCcccH-HHHHHHH
Q 002846          356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKR-MKSLGINPRLRSY-GPALSVF  432 (874)
Q Consensus       356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~P-d~~tyn~LI~~~~~~G~~d~A~~l~~~-M~~~Gi~Pd~~tY-n~LI~a~  432 (874)
                      -..|+.--+..-++.|..+|.+..+.+..+ ++.+++++|.-||. ++.+-|+++|+- |+..   +|.-.| ...++.+
T Consensus       370 ~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf---~d~p~yv~~YldfL  445 (656)
T KOG1914|consen  370 CQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKF---GDSPEYVLKYLDFL  445 (656)
T ss_pred             hHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhc---CCChHHHHHHHHHH
Confidence            567777778888899999999999988877 88899999988885 578889999975 3333   444444 4567778


Q ss_pred             HhCCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          433 CNNGDVDKACSVEEHMLEHGVYPEE--PELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       433 ~k~G~~~~A~~l~~eM~~~Gv~Pd~--~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      ...++-..|..+|+.....++.||.  ..|..+|+.=..-|++.-+.++-+++...
T Consensus       446 ~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a  501 (656)
T KOG1914|consen  446 SHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA  501 (656)
T ss_pred             HHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence            8889999999999999888666654  78999999889999999998888887665

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=91.13  E-value=0.2  Score=43.93  Aligned_cols=80  Identities=15%  Similarity=0.217  Sum_probs=43.4

Q ss_pred             cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHH-HHHHHHHhCCChhHHH
Q 002846          365 KYAFQRGFEIYEKMCLDEVP-MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG-PALSVFCNNGDVDKAC  442 (874)
Q Consensus       365 ~g~~~~A~~lf~~M~~~Gv~-Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn-~LI~a~~k~G~~~~A~  442 (874)
                      .|+++.|..+|+++....-. ++...+-.+..+|.+.|+.++|..+++. .+  ..|+..... .+-.+|.+.|+.++|.
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi   78 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI   78 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            35667777777777765321 2333444467777777777777777766 21  122221122 2234455667777777


Q ss_pred             HHHHH
Q 002846          443 SVEEH  447 (874)
Q Consensus       443 ~l~~e  447 (874)
                      +++++
T Consensus        79 ~~l~~   83 (84)
T PF12895_consen   79 KALEK   83 (84)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            66654

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.09  E-value=13  Score=44.03  Aligned_cols=116  Identities=15%  Similarity=0.176  Sum_probs=84.1

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHH--HHHHHH--h
Q 002846          359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP--ALSVFC--N  434 (874)
Q Consensus       359 I~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~--LI~a~~--k  434 (874)
                      |+.+.+.|++++|...-..+...+ +-|...+-.=+-++.+.+.+++|+.+.+.   .   +-..+++.  +=.+||  +
T Consensus        19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~---~~~~~~~~~~fEKAYc~Yr   91 (652)
T KOG2376|consen   19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---N---GALLVINSFFFEKAYCEYR   91 (652)
T ss_pred             HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---c---chhhhcchhhHHHHHHHHH
Confidence            566778889999999999988766 55667777777888899999999966543   2   22223333  356777  6


Q ss_pred             CCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          435 NGDVDKACSVEEHMLEHGVYPEEP-ELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       435 ~G~~~~A~~l~~eM~~~Gv~Pd~~-ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      .+..++|...++     |+.++.. +...=-..|-+.|++++|+++++.+.++
T Consensus        92 lnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn  139 (652)
T KOG2376|consen   92 LNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN  139 (652)
T ss_pred             cccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            789999998887     3334332 4443445567889999999999999776

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=90.97  E-value=3.7  Score=41.12  Aligned_cols=111  Identities=17%  Similarity=0.171  Sum_probs=73.6

Q ss_pred             chHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHH
Q 002846          356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVF  432 (874)
Q Consensus       356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd--~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd-~~tYn~LI~a~  432 (874)
                      ..+-..+...|++++|...|++.......+.  ...+..+...+.+.|++++|...+.+....  .|+ ...+..+-..|
T Consensus        39 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~  116 (172)
T PRK02603         39 YRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIAVIY  116 (172)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence            4444567788999999999999886543332  468889999999999999999999988765  344 44445555566


Q ss_pred             HhCCC--------------hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 002846          433 CNNGD--------------VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK  472 (874)
Q Consensus       433 ~k~G~--------------~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~  472 (874)
                      ...|+              +++|.+++.....    .+...|..++.-+...|+
T Consensus       117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~----~~p~~~~~~~~~~~~~~~  166 (172)
T PRK02603        117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR----LAPNNYIEAQNWLKTTGR  166 (172)
T ss_pred             HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh----hCchhHHHHHHHHHhcCc
Confidence            66665              3445555555444    223335555555544443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=90.91  E-value=0.51  Score=39.17  Aligned_cols=64  Identities=20%  Similarity=0.295  Sum_probs=50.6

Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHH
Q 002846          363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL  429 (874)
Q Consensus       363 ~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI  429 (874)
                      .+.|++++|.++|+.+.... +-|...+-.|..+|.+.|++++|..+++.+...  .|+...|..++
T Consensus         2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~   65 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL   65 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence            46789999999999998764 237778888999999999999999999998765  46655554443

...

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=90.80  E-value=1  Score=49.35  Aligned_cols=144  Identities=13%  Similarity=0.069  Sum_probs=100.8

Q ss_pred             hhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcC-CCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccch
Q 002846          279 GQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG-QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEI  357 (874)
Q Consensus       279 vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~G-i~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~  357 (874)
                      .+|-.+|+.      .-+.+.++.|..+|.+-...+ +...++..                                 .+
T Consensus         2 ~v~i~~m~~------~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~---------------------------------~A   42 (280)
T PF05843_consen    2 LVWIQYMRF------MRRTEGIEAARKVFKRARKDKRCTYHVYVA---------------------------------YA   42 (280)
T ss_dssp             HHHHHHHHH------HHHHHHHHHHHHHHHHHHCCCCS-THHHHH---------------------------------HH
T ss_pred             HHHHHHHHH------HHHhCChHHHHHHHHHHHcCCCCCHHHHHH---------------------------------HH
Confidence            346666666      667777999999999887543 11222111                                 44


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc----ccHHHHHHHHH
Q 002846          358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL----RSYGPALSVFC  433 (874)
Q Consensus       358 lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~----~tYn~LI~a~~  433 (874)
                      +|. +...++.+.|..||+...+. +.-+...|...|+.+...++.+.|..+|++.... + |..    ..|...|..=.
T Consensus        43 ~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l-~~~~~~~~iw~~~i~fE~  118 (280)
T PF05843_consen   43 LME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAISS-L-PKEKQSKKIWKKFIEFES  118 (280)
T ss_dssp             HHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-S-SCHHHCHHHHHHHHHHHH
T ss_pred             HHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-c-CchhHHHHHHHHHHHHHH
Confidence            443 33356777799999998875 4567888999999999999999999999998765 3 443    48999999999


Q ss_pred             hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 002846          434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVS  467 (874)
Q Consensus       434 k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~  467 (874)
                      +.|+++.+..|.+.+.+.  .|+...+..+++-|
T Consensus       119 ~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry  150 (280)
T PF05843_consen  119 KYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY  150 (280)
T ss_dssp             HHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred             HcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence            999999999999998873  46544444444433

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=90.79  E-value=12  Score=36.04  Aligned_cols=122  Identities=9%  Similarity=-0.011  Sum_probs=87.0

Q ss_pred             chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhC
Q 002846          356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN  435 (874)
Q Consensus       356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~  435 (874)
                      ..+|..+...+.......+++.+...+ ..+...+|.||..|++.. .....+.+..      .++......++..|-+.
T Consensus        11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~   82 (140)
T smart00299       11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA   82 (140)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence            778999988999999999999999887 478889999999999864 3444445442      24555566688888888


Q ss_pred             CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCchHHHHHHHHHHhcCCCCChhHHHHHHH
Q 002846          436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA-GKGDRVYYLLHKLRTSVRKVSPSTADVIAK  500 (874)
Q Consensus       436 G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~-G~~d~A~~ll~~M~~~~~~~sp~T~~~I~~  500 (874)
                      +-+++|..++..+..         |.-.+..+... ++.+.|.+.+.+-      -.|+.|..+..
T Consensus        83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~  133 (140)
T smart00299       83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLK  133 (140)
T ss_pred             CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHH
Confidence            988888888887743         23334444444 7788888877651      23456655443

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=90.61  E-value=43  Score=39.72  Aligned_cols=123  Identities=9%  Similarity=0.048  Sum_probs=90.0

Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCccc----HHHHHHHHH
Q 002846          361 EDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL--GINPRLRS----YGPALSVFC  433 (874)
Q Consensus       361 ~~~k~g~~~~A~~lf~~M~~~Gv~P-d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~--Gi~Pd~~t----Yn~LI~a~~  433 (874)
                      -|.+.+.++.|.+.|.+-..  +.| |...++-+--.....+.+.+|...|..-...  .+.+....    ++.|=++|-
T Consensus       389 ey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R  466 (611)
T KOG1173|consen  389 EYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR  466 (611)
T ss_pred             HHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH
Confidence            46668889999999977553  444 5667777666667788899999998876522  12222323    455557788


Q ss_pred             hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       434 k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      +.+..++|...|+.-.... .-+..+|.++--.|...|+++.|.+.|++-...
T Consensus       467 kl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l  518 (611)
T KOG1173|consen  467 KLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALAL  518 (611)
T ss_pred             HHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence            8999999999998876642 347778888777788899999999999987754

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=90.61  E-value=6.8  Score=45.86  Aligned_cols=133  Identities=10%  Similarity=0.042  Sum_probs=107.5

Q ss_pred             CCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCC-CeeeeccccHHHHHHhhhcCCCCcccccccccccCC
Q 002846          275 MDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS-NGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQD  353 (874)
Q Consensus       275 i~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~P-d~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~  353 (874)
                      +..+.+|-..|+.      --+..-+..|..+|.+..+.+..+ .++.+                               
T Consensus       363 ~~~tLv~~~~mn~------irR~eGlkaaR~iF~kaR~~~r~~hhVfVa-------------------------------  405 (656)
T KOG1914|consen  363 IDLTLVYCQYMNF------IRRAEGLKAARKIFKKAREDKRTRHHVFVA-------------------------------  405 (656)
T ss_pred             cCCceehhHHHHH------HHHhhhHHHHHHHHHHHhhccCCcchhhHH-------------------------------
Confidence            3356778888887      777888999999999999988776 55555                               


Q ss_pred             ccchHHHHHHhcCCHHHHHHHHHH-HHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--cccHHHHH
Q 002846          354 ADEIRLSEDAKKYAFQRGFEIYEK-MCLDEVPMNEA-SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR--LRSYGPAL  429 (874)
Q Consensus       354 ~~n~lI~~~~k~g~~~~A~~lf~~-M~~~Gv~Pd~~-tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd--~~tYn~LI  429 (874)
                        +++|..+|. ++.+-|+++|+- |+..|   |.. --...++-+...++-..|..+|++....++.|+  ...|..+|
T Consensus       406 --~A~mEy~cs-kD~~~AfrIFeLGLkkf~---d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l  479 (656)
T KOG1914|consen  406 --AALMEYYCS-KDKETAFRIFELGLKKFG---DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRML  479 (656)
T ss_pred             --HHHHHHHhc-CChhHHHHHHHHHHHhcC---CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHH
Confidence              899998886 556789999985 44444   433 346788888999999999999999998877666  58999999


Q ss_pred             HHHHhCCChhHHHHHHHHHHH
Q 002846          430 SVFCNNGDVDKACSVEEHMLE  450 (874)
Q Consensus       430 ~a~~k~G~~~~A~~l~~eM~~  450 (874)
                      ..=..-|++..+.++-+.+..
T Consensus       480 ~yES~vGdL~si~~lekR~~~  500 (656)
T KOG1914|consen  480 EYESNVGDLNSILKLEKRRFT  500 (656)
T ss_pred             HHHHhcccHHHHHHHHHHHHH
Confidence            999999999999999888764

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=90.40  E-value=3.5  Score=46.74  Aligned_cols=100  Identities=14%  Similarity=0.158  Sum_probs=80.9

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CcccHHHHHHHHHhCCCh
Q 002846          360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDV  438 (874)
Q Consensus       360 ~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~P-d~~tYn~LI~a~~k~G~~  438 (874)
                      ..+...|++++|+++|++..... +-+...|..+..+|.+.|++++|+..+++....  .| +...|..+-.+|...|++
T Consensus        10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~~   86 (356)
T PLN03088         10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEEY   86 (356)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCCH
Confidence            45567899999999999998764 346778899999999999999999999998875  34 456677777888999999


Q ss_pred             hHHHHHHHHHHHcCCCCCHHHHHHHH
Q 002846          439 DKACSVEEHMLEHGVYPEEPELEALL  464 (874)
Q Consensus       439 ~~A~~l~~eM~~~Gv~Pd~~ty~~LI  464 (874)
                      ++|...|+...+.  .|+......++
T Consensus        87 ~eA~~~~~~al~l--~P~~~~~~~~l  110 (356)
T PLN03088         87 QTAKAALEKGASL--APGDSRFTKLI  110 (356)
T ss_pred             HHHHHHHHHHHHh--CCCCHHHHHHH
Confidence            9999999998874  36655544443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=90.31  E-value=1.1  Score=43.43  Aligned_cols=70  Identities=20%  Similarity=0.287  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHH-----HcCCCCCHHH
Q 002846          389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHML-----EHGVYPEEPE  459 (874)
Q Consensus       389 tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~-----~~Gv~Pd~~t  459 (874)
                      +...++..+...|++++|..+...+.... +-|...|-.+|.+|...|+..+|.++|+.+.     +-|+.|+..+
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~  138 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET  138 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence            44555666666777777777776666542 2355566666777777777777766666653     2366665544

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=90.15  E-value=8.5  Score=45.94  Aligned_cols=139  Identities=9%  Similarity=-0.016  Sum_probs=94.2

Q ss_pred             chHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC--------ChhHHHHHHHHHHHC-CCCC
Q 002846          356 EIRLSEDAKKY-----AFQRGFEIYEKMCLDEVPMN-EASLTAVGRMAMSMG--------DGDMAFDMVKRMKSL-GINP  420 (874)
Q Consensus       356 n~lI~~~~k~g-----~~~~A~~lf~~M~~~Gv~Pd-~~tyn~LI~~~~~~G--------~~d~A~~l~~~M~~~-Gi~P  420 (874)
                      ...+.+.....     ....|.++|++..+.  .|| ...|..+..++....        ++..+.+........ ....
T Consensus       341 ~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~  418 (517)
T PRK10153        341 TLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNV  418 (517)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcC
Confidence            67776654432     377999999998876  455 344444433333221        223344444433222 1223


Q ss_pred             CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCChhHHHHHHH
Q 002846          421 RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAK  500 (874)
Q Consensus       421 d~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~T~~~I~~  500 (874)
                      +...|..+-..+...|+.++|...++...+.+  |+...|..+-..+...|+.++|.+.+.+-...  .|...||-.+..
T Consensus       419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~pt~~~~~~  494 (517)
T PRK10153        419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGENTLYWIEN  494 (517)
T ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCchHHHHHh
Confidence            44667766555556799999999999999866  88999999999999999999999999998776  676667755443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=89.89  E-value=0.4  Score=42.00  Aligned_cols=80  Identities=19%  Similarity=0.231  Sum_probs=56.0

Q ss_pred             cCChhHHHHHHHHHHHCCC-CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCchHHH
Q 002846          400 MGDGDMAFDMVKRMKSLGI-NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE-PELEALLRVSVEAGKGDRVY  477 (874)
Q Consensus       400 ~G~~d~A~~l~~~M~~~Gi-~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~-~ty~~LI~~~~~~G~~d~A~  477 (874)
                      .|+++.|..+++++.+..- .|+...+-.+-.+|.+.|+.++|..+++. ..  +.|.. ...-.+-.+|.+.|+.++|.
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi   78 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI   78 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            5789999999999987632 12333344477888999999999999988 22  22333 33334456678899999999


Q ss_pred             HHHHH
Q 002846          478 YLLHK  482 (874)
Q Consensus       478 ~ll~~  482 (874)
                      .+|.+
T Consensus        79 ~~l~~   83 (84)
T PF12895_consen   79 KALEK   83 (84)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            99875

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=89.86  E-value=5.4  Score=45.90  Aligned_cols=181  Identities=13%  Similarity=0.119  Sum_probs=126.0

Q ss_pred             cCChHHHHHHHHHHHHcCCCCCeee---ec-----cccHHHHHHhhhcC---CCCc-ccccccccccCCccchHHHHHHh
Q 002846          297 SYRFDDLDSTFNEKENLGQFSNGHM---KL-----NSQLLDGRSNLERG---PDDQ-SRKKDWSIDNQDADEIRLSEDAK  364 (874)
Q Consensus       297 ~g~~e~A~~lf~eM~~~Gi~Pd~~t---y~-----~g~~~eA~~l~~~m---~pd~-~ty~~w~i~~~~~~n~lI~~~~k  364 (874)
                      .+.+..|..+|+....-. ..+..-   |.     +..+.+|..++++.   -|-+ ..|           ---+.+--.
T Consensus        86 q~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlW-----------yKY~ymEE~  153 (677)
T KOG1915|consen   86 QKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLW-----------YKYIYMEEM  153 (677)
T ss_pred             HHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHH-----------HHHHHHHHH
Confidence            345567777777665432 111111   11     66778888888775   3322 222           233444456


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHH
Q 002846          365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSV  444 (874)
Q Consensus       365 ~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l  444 (874)
                      .|++..|..+|+.-.+  ..|+...|.+.|+.=.+-..++.|..+++..+-.  .|++.+|---...=-++|.+..|..+
T Consensus       154 LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~V  229 (677)
T KOG1915|consen  154 LGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSV  229 (677)
T ss_pred             hcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHH
Confidence            7899999999987665  4799999999999999999999999999988754  59999998888877889999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHH----HhcCCchHHHHHHHHHHhcCCCCChhHHHH
Q 002846          445 EEHMLEHGVYPEEPELEALLRVS----VEAGKGDRVYYLLHKLRTSVRKVSPSTADV  497 (874)
Q Consensus       445 ~~eM~~~Gv~Pd~~ty~~LI~~~----~~~G~~d~A~~ll~~M~~~~~~~sp~T~~~  497 (874)
                      |+...+.  .-|...-..|+-++    .++..+++|.-++..-..+  -|+..+-.+
T Consensus       230 yerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~--~pk~raeeL  282 (677)
T KOG1915|consen  230 YERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH--IPKGRAEEL  282 (677)
T ss_pred             HHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcccHHHH
Confidence            9877653  12334444455555    4566788888888888777  555444433

>PLN02789 farnesyltranstransferase

Probab=89.77  E-value=38  Score=37.87  Aligned_cols=209  Identities=12%  Similarity=0.035  Sum_probs=118.8

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcccCCCcccCCC-CHHHHHHHHhhcccCchhhhhcCCCC
Q 002846          199 DMCSKRGDVMGAIRLYDKAQREGIKLGQY-HYNVLLYLCSSAAVGVVKPAKSG-SGMRTLDTFEVSTMNSTELGDSRDMD  276 (874)
Q Consensus       199 ~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~-tyn~LL~a~~~~~~~~~~~~k~G-~~~~A~~vf~v~~~~s~em~~~~gi~  276 (874)
                      ..+...++.++|+.+++++.+.  .|+.+ .|+.-=.++.          +.| .+++++..++       ++... .-.
T Consensus        45 a~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~----------~L~~~l~eeL~~~~-------~~i~~-npk  104 (320)
T PLN02789         45 AVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLE----------ALDADLEEELDFAE-------DVAED-NPK  104 (320)
T ss_pred             HHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHH----------HcchhHHHHHHHHH-------HHHHH-CCc
Confidence            3345567888999999998853  34433 2322222222          234 4677777774       33322 222


Q ss_pred             chhhhHhhhcCcccChhhhhcCC--hHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCc
Q 002846          277 NNGQLDYGSSPMIDKLESNSSYR--FDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDA  354 (874)
Q Consensus       277 d~vtyn~LI~~~~~~~~~~~~g~--~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~  354 (874)
                      +...|+-.--.      +.+.|.  .++++.++++|.+..                          .-.|+.|       
T Consensus       105 nyqaW~~R~~~------l~~l~~~~~~~el~~~~kal~~d--------------------------pkNy~AW-------  145 (320)
T PLN02789        105 NYQIWHHRRWL------AEKLGPDAANKELEFTRKILSLD--------------------------AKNYHAW-------  145 (320)
T ss_pred             chHHhHHHHHH------HHHcCchhhHHHHHHHHHHHHhC--------------------------cccHHHH-------
Confidence            44445533222      222333  245666666665542                          1111222       


Q ss_pred             cchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCh----hHHHHHHHHHHHCCCCCCcccHHH
Q 002846          355 DEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM---GDG----DMAFDMVKRMKSLGINPRLRSYGP  427 (874)
Q Consensus       355 ~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~---G~~----d~A~~l~~~M~~~Gi~Pd~~tYn~  427 (874)
                       +-.--.+.+.|.+++|++.+++|.+.+. -|...|+-....+.+.   |..    +++.+....+.... +-|...|+-
T Consensus       146 -~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Y  222 (320)
T PLN02789        146 -SHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRY  222 (320)
T ss_pred             -HHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHH
Confidence             2222334455779999999999998763 3556676665555544   222    45666665555542 235677777


Q ss_pred             HHHHHHhC----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 002846          428 ALSVFCNN----GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA  470 (874)
Q Consensus       428 LI~a~~k~----G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~  470 (874)
                      +-..|...    +...+|.+++.+....+ ..+......|++.|+..
T Consensus       223 l~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~  268 (320)
T PLN02789        223 LRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEG  268 (320)
T ss_pred             HHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhh
Confidence            77777763    34466888888866643 34567788899999863

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=89.22  E-value=4.7  Score=46.05  Aligned_cols=136  Identities=15%  Similarity=0.148  Sum_probs=109.2

Q ss_pred             chHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccH-HHHHHHHH
Q 002846          356 EIRLSEDAKKYAFQRGFEIYEKMCLDE-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY-GPALSVFC  433 (874)
Q Consensus       356 n~lI~~~~k~g~~~~A~~lf~~M~~~G-v~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tY-n~LI~a~~  433 (874)
                      -+.|+...+..-++.|..+|-+..+.| +.+++..|+++|.-+|. |+...|..+|+-=...  -||...| +-.+..+.
T Consensus       401 C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi  477 (660)
T COG5107         401 CVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLLFLI  477 (660)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHHHHH
Confidence            667888888889999999999999999 67999999999998875 6788899999753222  3666655 45677788


Q ss_pred             hCCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCChhHHHH
Q 002846          434 NNGDVDKACSVEEHMLEHGVYPE--EPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV  497 (874)
Q Consensus       434 k~G~~~~A~~l~~eM~~~Gv~Pd--~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~T~~~  497 (874)
                      ..++-+.|..+|+.-..+ +.-+  ...|..||+-=..-|++.-|+.+=++|...  .|..++..+
T Consensus       478 ~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~ev  540 (660)
T COG5107         478 RINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEV  540 (660)
T ss_pred             HhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHH
Confidence            899999999999955432 1222  568999999999999999999999999988  777776555

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=89.03  E-value=14  Score=45.68  Aligned_cols=109  Identities=11%  Similarity=0.047  Sum_probs=86.7

Q ss_pred             CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcc-cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHH-
Q 002846          383 VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR-SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL-  460 (874)
Q Consensus       383 v~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~-tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty-  460 (874)
                      ...+...+-.|.+.....|..++|..+++...+.  .||.. ....+...+.+.+++++|....+......  |+..+. 
T Consensus        82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~~~~  157 (694)
T PRK15179         82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSAREI  157 (694)
T ss_pred             ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCHHHH
Confidence            4556889999999999999999999999998764  67754 44557788889999999999999998865  766554 


Q ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhcCCCCC-hhHHHH
Q 002846          461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVS-PSTADV  497 (874)
Q Consensus       461 ~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~s-p~T~~~  497 (874)
                      ..+-.++.+.|+.++|..+|++....  .+. ++++..
T Consensus       158 ~~~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~  193 (694)
T PRK15179        158 LLEAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVG  193 (694)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHH
Confidence            44555667889999999999999985  544 334433

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=88.96  E-value=1.1  Score=43.51  Aligned_cols=68  Identities=16%  Similarity=0.264  Sum_probs=52.5

Q ss_pred             chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCccc
Q 002846          356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKS-----LGINPRLRS  424 (874)
Q Consensus       356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~-----~Gi~Pd~~t  424 (874)
                      ..++..+...|+.++|..+...+.... +.|+..|-.+|++|...|+..+|.++|+.+..     .|+.|+..+
T Consensus        66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~  138 (146)
T PF03704_consen   66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET  138 (146)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence            556777888999999999999998865 56899999999999999999999999998753     488887654

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=88.35  E-value=5.8  Score=39.49  Aligned_cols=55  Identities=13%  Similarity=0.127  Sum_probs=26.4

Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 002846          361 EDAKKYAFQRGFEIYEKMCLDEVPM--NEASLTAVGRMAMSMGDGDMAFDMVKRMKS  415 (874)
Q Consensus       361 ~~~k~g~~~~A~~lf~~M~~~Gv~P--d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~  415 (874)
                      .+...|++++|...|+........|  ...+|..+-..+...|+.++|...++....
T Consensus        44 ~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~  100 (168)
T CHL00033         44 SAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE  100 (168)
T ss_pred             HHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3334455555555555544332111  123455555555555555555555555443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=88.27  E-value=9.3  Score=41.47  Aligned_cols=103  Identities=9%  Similarity=-0.004  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc----ccHHHHHHHHHhCCChhHHHHHHHHHHHcC--CCCCHHHH
Q 002846          387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL----RSYGPALSVFCNNGDVDKACSVEEHMLEHG--VYPEEPEL  460 (874)
Q Consensus       387 ~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~----~tYn~LI~a~~k~G~~~~A~~l~~eM~~~G--v~Pd~~ty  460 (874)
                      ...|...+..+.+.|++++|...|+.+.+.  .|+.    ..+--+-..|...|+.++|...|+.+...-  -......+
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl  220 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM  220 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence            455777776667779999999999988875  3554    244446677888899999999999987642  11112333


Q ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhcCCCCChh
Q 002846          461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS  493 (874)
Q Consensus       461 ~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~  493 (874)
                      -.+...+...|+.++|..+|+.+.+.  .|...
T Consensus       221 ~klg~~~~~~g~~~~A~~~~~~vi~~--yP~s~  251 (263)
T PRK10803        221 FKVGVIMQDKGDTAKAKAVYQQVIKK--YPGTD  251 (263)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence            33445566889999999999999887  66654

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=88.15  E-value=11  Score=35.90  Aligned_cols=101  Identities=12%  Similarity=0.075  Sum_probs=61.3

Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCccc---HHH-HHHHHHhC
Q 002846          362 DAKKYAFQRGFEIYEKMCLDEVPMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS---YGP-ALSVFCNN  435 (874)
Q Consensus       362 ~~k~g~~~~A~~lf~~M~~~Gv~Pd--~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~t---Yn~-LI~a~~k~  435 (874)
                      +-..|+.++|..+|++-...|....  ...+-.+-..+-..|++++|..+|++....  .|+...   ... +--++...
T Consensus        11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~L~~~   88 (120)
T PF12688_consen   11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALALYNL   88 (120)
T ss_pred             HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHHC
Confidence            3456788888888888777776544  234455666677788888888888776654  243111   111 11244566


Q ss_pred             CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 002846          436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSV  468 (874)
Q Consensus       436 G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~  468 (874)
                      |+.++|.+.+-....    ++...|.--|..|+
T Consensus        89 gr~~eAl~~~l~~la----~~~~~y~ra~~~ya  117 (120)
T PF12688_consen   89 GRPKEALEWLLEALA----ETLPRYRRAIRFYA  117 (120)
T ss_pred             CCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence            777777777655444    44446665555554

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=87.52  E-value=7.6  Score=44.49  Aligned_cols=146  Identities=12%  Similarity=0.042  Sum_probs=111.0

Q ss_pred             hhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcC-CCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccc
Q 002846          278 NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG-QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADE  356 (874)
Q Consensus       278 ~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~G-i~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n  356 (874)
                      ...|...|+.      .-+...++.|..+|.+....| +.++++.|                                 +
T Consensus       397 t~v~C~~~N~------v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~---------------------------------~  437 (660)
T COG5107         397 TFVFCVHLNY------VLRKRGLEAARKLFIKLRKEGIVGHHVYIY---------------------------------C  437 (660)
T ss_pred             hhHHHHHHHH------HHHHhhHHHHHHHHHHHhccCCCCcceeee---------------------------------H
Confidence            3457888888      778888999999999999999 67788787                                 9


Q ss_pred             hHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--cccHHHHHHHHH
Q 002846          357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASL-TAVGRMAMSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFC  433 (874)
Q Consensus       357 ~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~ty-n~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd--~~tYn~LI~a~~  433 (874)
                      ++|..+|. |+..-|..+|+-=...  -||...| +-.+.-+...++-+.|..+|+.-..+ +.-+  ...|-.+|.-=.
T Consensus       438 A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs  513 (660)
T COG5107         438 AFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYES  513 (660)
T ss_pred             HHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHH
Confidence            99988775 5667899999853332  2455554 56777788899999999999954433 2223  468999999999


Q ss_pred             hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 002846          434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV  468 (874)
Q Consensus       434 k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~  468 (874)
                      +-|++..|..+-+.|.+  +.|-..+-.....-|.
T Consensus       514 ~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~  546 (660)
T COG5107         514 MVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYA  546 (660)
T ss_pred             hhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHh
Confidence            99999999999888877  4576666665555554

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=87.40  E-value=3.2  Score=45.38  Aligned_cols=119  Identities=18%  Similarity=0.234  Sum_probs=72.4

Q ss_pred             cCCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhc-CChhHHHHHHHHHHHC----CCCCC--cccHHHHHHH
Q 002846          365 KYAFQRGFEIYEKMCL----DEVPMN--EASLTAVGRMAMSM-GDGDMAFDMVKRMKSL----GINPR--LRSYGPALSV  431 (874)
Q Consensus       365 ~g~~~~A~~lf~~M~~----~Gv~Pd--~~tyn~LI~~~~~~-G~~d~A~~l~~~M~~~----Gi~Pd--~~tYn~LI~a  431 (874)
                      ..++++|.+.+++...    .| .|+  ..++..+-..|-.. |++++|.+.|++-...    | .+.  ..++.-+...
T Consensus        87 ~~~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l  164 (282)
T PF14938_consen   87 KGDPDEAIECYEKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADL  164 (282)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred             hhCHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHH
Confidence            3355666655554432    22 222  22455566667777 8999999888765432    3 121  3445567788


Q ss_pred             HHhCCChhHHHHHHHHHHHcCCC-----CCHHH--HHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          432 FCNNGDVDKACSVEEHMLEHGVY-----PEEPE--LEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       432 ~~k~G~~~~A~~l~~eM~~~Gv~-----Pd~~t--y~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      +.+.|++++|.++|++....-+.     .+...  +.++| ++...|+...|...|++....
T Consensus       165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l-~~L~~~D~v~A~~~~~~~~~~  225 (282)
T PF14938_consen  165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAIL-CHLAMGDYVAARKALERYCSQ  225 (282)
T ss_dssp             HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHH-HHHHTT-HHHHHHHHHHHGTT
T ss_pred             HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhh
Confidence            89999999999999998765332     22322  23444 445578999999999998876

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=87.18  E-value=35  Score=37.77  Aligned_cols=68  Identities=12%  Similarity=0.114  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhc-CC--hhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCC
Q 002846          369 QRGFEIYEKMCLDEVPMNEA-SLTAVGRMAMSM-GD--GDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD  437 (874)
Q Consensus       369 ~~A~~lf~~M~~~Gv~Pd~~-tyn~LI~~~~~~-G~--~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~  437 (874)
                      +++..+|+.+...|+..+-. -+.+-|-+++.. ..  +..+.++++.+++.|+++....|. +|..++-.++
T Consensus       160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp-~lGlLall~~  231 (297)
T PF13170_consen  160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYP-TLGLLALLED  231 (297)
T ss_pred             HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccccccc-HHHHHHhcCC
Confidence            45666777777766655322 222333333322 22  346777888888888887777765 4555554443

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=87.16  E-value=77  Score=39.61  Aligned_cols=220  Identities=11%  Similarity=0.055  Sum_probs=134.3

Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhh
Q 002846          202 SKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQL  281 (874)
Q Consensus       202 ~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vty  281 (874)
                      ...+++..|+.......+.  -|| ..|..++.|+...        +.|+.++|...++        -.+..+..|..|.
T Consensus        20 ld~~qfkkal~~~~kllkk--~Pn-~~~a~vLkaLsl~--------r~gk~~ea~~~Le--------~~~~~~~~D~~tL   80 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKK--HPN-ALYAKVLKALSLF--------RLGKGDEALKLLE--------ALYGLKGTDDLTL   80 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHH--CCC-cHHHHHHHHHHHH--------HhcCchhHHHHHh--------hhccCCCCchHHH
Confidence            4567888899888887753  244 4577788888754        6789999998774        2222233488889


Q ss_pred             HhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHH
Q 002846          282 DYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSE  361 (874)
Q Consensus       282 n~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~  361 (874)
                      .++-..      |.+.++.++|..+++.....  -|+..-.                                 ..+..+
T Consensus        81 q~l~~~------y~d~~~~d~~~~~Ye~~~~~--~P~eell---------------------------------~~lFma  119 (932)
T KOG2053|consen   81 QFLQNV------YRDLGKLDEAVHLYERANQK--YPSEELL---------------------------------YHLFMA  119 (932)
T ss_pred             HHHHHH------HHHHhhhhHHHHHHHHHHhh--CCcHHHH---------------------------------HHHHHH
Confidence            999999      99999999999999977654  2321111                                 334455


Q ss_pred             HHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----------ChhHHHHHHHHHHHCC-CCCCcccHH
Q 002846          362 DAKKYAFQR----GFEIYEKMCLDEVPMNEASLTAVGRMAMSMG----------DGDMAFDMVKRMKSLG-INPRLRSYG  426 (874)
Q Consensus       362 ~~k~g~~~~----A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G----------~~d~A~~l~~~M~~~G-i~Pd~~tYn  426 (874)
                      |.+.+.+.+    |+++++.     ++-+...|=++|+...+.-          -+..|.+.++.|.+.+ -.-...-.-
T Consensus       120 yvR~~~yk~qQkaa~~LyK~-----~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~  194 (932)
T KOG2053|consen  120 YVREKSYKKQQKAALQLYKN-----FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEII  194 (932)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-----CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHH
Confidence            555554433    4444432     2223444445555544321          1234555666666553 111111111


Q ss_pred             HHHHHHHhCCChhHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          427 PALSVFCNNGDVDKACSVEE-HMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       427 ~LI~a~~k~G~~~~A~~l~~-eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      .-+..+-..|+.++|++++. ...+.-..-+...-+--++.+...+++.+..++-.++...
T Consensus       195 Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k  255 (932)
T KOG2053|consen  195 LYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK  255 (932)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence            12233445678889998884 4444444445555566777788888888888888888877

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=86.49  E-value=67  Score=36.85  Aligned_cols=263  Identities=9%  Similarity=-0.013  Sum_probs=143.9

Q ss_pred             HHHcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchh
Q 002846          201 CSKRGDVMGAIRLYDKAQR-EGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNG  279 (874)
Q Consensus       201 ~~k~G~~~~Al~lf~~M~~-~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~v  279 (874)
                      .|-.++-..|..++-.+.. .-++-|++....+-+.+.          ..|+.++|...|.-     ..|.+-..+...-
T Consensus       206 q~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~----------~~Gdn~~a~~~Fe~-----~~~~dpy~i~~MD  270 (564)
T KOG1174|consen  206 QMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLY----------YNGDYFQAEDIFSS-----TLCANPDNVEAMD  270 (564)
T ss_pred             HHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhh----------hhcCchHHHHHHHH-----HhhCChhhhhhHH
Confidence            3445666666666666653 456677888888888888          78999999999951     1222221111112


Q ss_pred             hhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcC-------CCCCeeeeccccHHHHHHhhhcC-CCCccccccccccc
Q 002846          280 QLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG-------QFSNGHMKLNSQLLDGRSNLERG-PDDQSRKKDWSIDN  351 (874)
Q Consensus       280 tyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~G-------i~Pd~~ty~~g~~~eA~~l~~~m-~pd~~ty~~w~i~~  351 (874)
                      .|..|         +.+.|+.+....+...+....       +..-.+.|-..+...|+.+-++- ..|.-..       
T Consensus       271 ~Ya~L---------L~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~-------  334 (564)
T KOG1174|consen  271 LYAVL---------LGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNH-------  334 (564)
T ss_pred             HHHHH---------HHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccc-------
Confidence            26556         566778877777777665432       22222333344555555554443 1111111       


Q ss_pred             CCccchHH--HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHH
Q 002846          352 QDADEIRL--SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL  429 (874)
Q Consensus       352 ~~~~n~lI--~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI  429 (874)
                         -..++  ..+...++.++|.=-|..-..-- +-+..+|-.|+..|...|.+.+|.-+-+...+. +.-+..+.. |+
T Consensus       335 ---~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~Lt-L~  408 (564)
T KOG1174|consen  335 ---EALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLT-LF  408 (564)
T ss_pred             ---hHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhh-hh
Confidence               12233  33445678888887777655431 236678888888888888888877665543322 112222222 22


Q ss_pred             HH---HHhCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCChhHHHHHHHHHhc
Q 002846          430 SV---FCNNGDVDKACSVEEHMLEHGVYPEEP-ELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNS  504 (874)
Q Consensus       430 ~a---~~k~G~~~~A~~l~~eM~~~Gv~Pd~~-ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~T~~~I~~~~~s  504 (874)
                      .+   +-.-.--++|..+++.-..  +.|+-. .-+.+-..|...|...++..+++.-...  .+.-+.-+.+-..+..
T Consensus       409 g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A  483 (564)
T KOG1174|consen  409 GTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRA  483 (564)
T ss_pred             cceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHH
Confidence            11   1111223566666655433  234432 2344445566778888888888877665  4444433444444443

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=85.98  E-value=12  Score=41.31  Aligned_cols=128  Identities=16%  Similarity=0.143  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC----ChhHHHHHHHHHHHCC---CCCCcccHHHHHHHHHhCCC-
Q 002846          368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS--MG----DGDMAFDMVKRMKSLG---INPRLRSYGPALSVFCNNGD-  437 (874)
Q Consensus       368 ~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~--~G----~~d~A~~l~~~M~~~G---i~Pd~~tYn~LI~a~~k~G~-  437 (874)
                      +++..++++.|++.|+.-+..+|-+..-....  ..    ....|..+++.|++..   ..++...+..||..  ...+ 
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~  155 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV  155 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence            66778899999999999998887663333333  22    3567999999999875   34778888888776  3333 


Q ss_pred             ---hhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCC---chHHHHHHHHHHhcCCCCChhHHHH
Q 002846          438 ---VDKACSVEEHMLEHGVYPEEP-ELEALLRVSVEAGK---GDRVYYLLHKLRTSVRKVSPSTADV  497 (874)
Q Consensus       438 ---~~~A~~l~~eM~~~Gv~Pd~~-ty~~LI~~~~~~G~---~d~A~~ll~~M~~~~~~~sp~T~~~  497 (874)
                         ++.+..+|+.+...|+..+-. -+-+-|-+++....   ..++..+++.+.+++..+.+..|.+
T Consensus       156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~  222 (297)
T PF13170_consen  156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPT  222 (297)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccH
Confidence               356788888999888876443 33333333332211   4588999999999977666666554

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=85.68  E-value=11  Score=37.36  Aligned_cols=96  Identities=18%  Similarity=0.082  Sum_probs=68.1

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 002846          386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL  463 (874)
Q Consensus       386 d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd--~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~L  463 (874)
                      -...|..+...+...|++++|...|++.....-.|.  ..+|..+=..|...|+.++|...++...... .....++..+
T Consensus        34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~l  112 (168)
T CHL00033         34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNM  112 (168)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence            355677788888889999999999998876532222  2467777788889999999999999887642 2233455556


Q ss_pred             HHHHH-------hcCCchHHHHHHHH
Q 002846          464 LRVSV-------EAGKGDRVYYLLHK  482 (874)
Q Consensus       464 I~~~~-------~~G~~d~A~~ll~~  482 (874)
                      ...+.       ..|+.++|...+.+
T Consensus       113 a~i~~~~~~~~~~~g~~~~A~~~~~~  138 (168)
T CHL00033        113 AVICHYRGEQAIEQGDSEIAEAWFDQ  138 (168)
T ss_pred             HHHHHHhhHHHHHcccHHHHHHHHHH
Confidence            55665       66777765555543

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=84.67  E-value=2.9  Score=34.31  Aligned_cols=54  Identities=20%  Similarity=0.265  Sum_probs=29.4

Q ss_pred             HHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          431 VFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       431 a~~k~G~~~~A~~l~~eM~~~Gv~P-d~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      .+...|++++|..+|+...+..  | +...+..+-..+...|++++|..+|++..+.
T Consensus         6 ~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    6 ALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3455566666666666665544  3 3344444555555666666666666665543

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=84.67  E-value=22  Score=43.74  Aligned_cols=236  Identities=13%  Similarity=0.126  Sum_probs=129.3

Q ss_pred             CHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCch
Q 002846          190 EQFQLRVELD--MCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNST  267 (874)
Q Consensus       190 d~~tyn~LI~--a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~  267 (874)
                      |..|-.++++  -|.--|+.++|.+-....+.      ...|..|-+.|.          +..+++-|.--+.       
T Consensus       725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~McV----------kT~RLDVAkVClG-------  781 (1416)
T KOG3617|consen  725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCV----------KTRRLDVAKVCLG-------  781 (1416)
T ss_pred             CHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhh----------hhccccHHHHhhh-------
Confidence            4466677774  57788999999988877664      367888888888          4444444444332       


Q ss_pred             hhhhcCCCC-----------chhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhc
Q 002846          268 ELGDSRDMD-----------NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLER  336 (874)
Q Consensus       268 em~~~~gi~-----------d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~  336 (874)
                      .|....|..           +..-...|         -...|.+++|..+|.+-++..+. |-.--+.|++.+|.++-+.
T Consensus       782 hm~~aRgaRAlR~a~q~~~e~eakvAvL---------AieLgMlEeA~~lYr~ckR~DLl-NKlyQs~g~w~eA~eiAE~  851 (1416)
T KOG3617|consen  782 HMKNARGARALRRAQQNGEEDEAKVAVL---------AIELGMLEEALILYRQCKRYDLL-NKLYQSQGMWSEAFEIAET  851 (1416)
T ss_pred             hhhhhhhHHHHHHHHhCCcchhhHHHHH---------HHHHhhHHHHHHHHHHHHHHHHH-HHHHHhcccHHHHHHHHhh
Confidence            121111111           11111111         34567889999998877664211 0000016777777776443


Q ss_pred             C--CCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHH----------HHCCC---------CCCHHHHHHHHH
Q 002846          337 G--PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKM----------CLDEV---------PMNEASLTAVGR  395 (874)
Q Consensus       337 m--~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M----------~~~Gv---------~Pd~~tyn~LI~  395 (874)
                      -  ..=-.||           ----..+-..++++.|++.|++-          .....         .-|...|.---.
T Consensus       852 ~DRiHLr~Ty-----------y~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgq  920 (1416)
T KOG3617|consen  852 KDRIHLRNTY-----------YNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQ  920 (1416)
T ss_pred             ccceehhhhH-----------HHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHH
Confidence            2  0001122           11112223345677777777642          11110         112333333333


Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchH
Q 002846          396 MAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDR  475 (874)
Q Consensus       396 ~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~  475 (874)
                      -+-..|++|.|+.++...+.         |-+++...|-.|++++|-++-++-      -|....--|-+.|-..|++.+
T Consensus       921 YlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~  985 (1416)
T KOG3617|consen  921 YLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVK  985 (1416)
T ss_pred             HHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHH
Confidence            33346666666666655433         345666667777777777776553      244445556677778888888


Q ss_pred             HHHHHHHHH
Q 002846          476 VYYLLHKLR  484 (874)
Q Consensus       476 A~~ll~~M~  484 (874)
                      |..+|.+.+
T Consensus       986 Av~FfTrAq  994 (1416)
T KOG3617|consen  986 AVKFFTRAQ  994 (1416)
T ss_pred             HHHHHHHHH
Confidence            888887654

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=84.30  E-value=3.7  Score=33.70  Aligned_cols=54  Identities=17%  Similarity=0.241  Sum_probs=33.9

Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 002846          361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKS  415 (874)
Q Consensus       361 ~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~  415 (874)
                      .+.+.|++++|.++|+...+.. +-+...+..+-.++...|++++|..+|++..+
T Consensus         6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   59 (65)
T PF13432_consen    6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE   59 (65)
T ss_dssp             HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4556667777777777766654 22455666666666677777777777766654

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=84.22  E-value=44  Score=35.76  Aligned_cols=158  Identities=8%  Similarity=-0.012  Sum_probs=91.3

Q ss_pred             hhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHH
Q 002846          294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE  373 (874)
Q Consensus       294 ~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~  373 (874)
                      +.+.|++++|.+.|++....  -|+. .+    ...|.                        --+...+.+.++.++|..
T Consensus        42 ~~~~g~y~~Ai~~f~~l~~~--yP~s-~~----a~~a~------------------------l~la~ayy~~~~y~~A~~   90 (243)
T PRK10866         42 KLQDGNWKQAITQLEALDNR--YPFG-PY----SQQVQ------------------------LDLIYAYYKNADLPLAQA   90 (243)
T ss_pred             HHHCCCHHHHHHHHHHHHHh--CCCC-hH----HHHHH------------------------HHHHHHHHhcCCHHHHHH
Confidence            55688999999999998875  2332 11    00010                        123466778899999999


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHh-----------------cCC---hhHHHHHHHHHHHCCCCCCcccHH-------
Q 002846          374 IYEKMCLDEVPMNEASLTAVGRMAMS-----------------MGD---GDMAFDMVKRMKSLGINPRLRSYG-------  426 (874)
Q Consensus       374 lf~~M~~~Gv~Pd~~tyn~LI~~~~~-----------------~G~---~d~A~~l~~~M~~~Gi~Pd~~tYn-------  426 (874)
                      .|++..+.--.-..+-|.-.+.+.+.                 ..|   ...|+..|+++.+.  -|+..-..       
T Consensus        91 ~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~ya~~A~~rl~  168 (243)
T PRK10866         91 AIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQYTTDATKRLV  168 (243)
T ss_pred             HHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHH
Confidence            99988876433333455555555542                 112   23455666666554  24432110       


Q ss_pred             -----------HHHHHHHhCCChhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 002846          427 -----------PALSVFCNNGDVDKACSVEEHMLEH--GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR  484 (874)
Q Consensus       427 -----------~LI~a~~k~G~~~~A~~l~~eM~~~--Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~  484 (874)
                                 .+-.-|-+.|....|..=|+.+.+.  +........-.|+.+|.+.|..++|......+.
T Consensus       169 ~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        169 FLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence                       1233456666666666666666654  334444555566666666677666666655443

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=83.93  E-value=1.1e+02  Score=37.09  Aligned_cols=267  Identities=12%  Similarity=0.085  Sum_probs=146.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc------------CCCcccCCCCHHHHHHHH
Q 002846          192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAV------------GVVKPAKSGSGMRTLDTF  259 (874)
Q Consensus       192 ~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~------------~~~~~~k~G~~~~A~~vf  259 (874)
                      ..|++|-+-|.+.|+++.|..+|++..+.  ...+.-|+.+.++|+.-.-            .+..+...-+++-....|
T Consensus       249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~  326 (835)
T KOG2047|consen  249 FLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARF  326 (835)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHH
Confidence            57999999999999999999999998754  3456778888888873110            000000011122222222


Q ss_pred             hhcccCchhhhhcCCCC-----------chhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeec-----
Q 002846          260 EVSTMNSTELGDSRDMD-----------NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL-----  323 (874)
Q Consensus       260 ~v~~~~s~em~~~~gi~-----------d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~-----  323 (874)
                             +.++....+-           |+-+|.--++.        ..|+..+-...|.+.... +.|-...=+     
T Consensus       327 -------e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--------~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw  390 (835)
T KOG2047|consen  327 -------ESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--------YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLW  390 (835)
T ss_pred             -------HHHHhccchHHHHHHHhcCCccHHHHHhhhhh--------hcCChHHHHHHHHHHHHc-cCcccCCCChhhHH
Confidence                   1222221111           23334333322        455566667777776554 333222111     


Q ss_pred             ---------cccHHHHHHhhhcC--CCCc------ccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHC-----
Q 002846          324 ---------NSQLLDGRSNLERG--PDDQ------SRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD-----  381 (874)
Q Consensus       324 ---------~g~~~eA~~l~~~m--~pd~------~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~-----  381 (874)
                               +|.+++|..+|+..  .|=.      .+|           -..-..-.+..+++.|+.+.+.-..-     
T Consensus       391 ~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw-----------~~waemElrh~~~~~Al~lm~~A~~vP~~~~  459 (835)
T KOG2047|consen  391 VEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVW-----------CAWAEMELRHENFEAALKLMRRATHVPTNPE  459 (835)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHH-----------HHHHHHHHhhhhHHHHHHHHHhhhcCCCchh
Confidence                     88899999999887  2211      122           22223334555677777766543321     


Q ss_pred             -----CCCC-------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCc-ccHHHHHHHHHhCCChhHHHHHHHH
Q 002846          382 -----EVPM-------NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN-PRL-RSYGPALSVFCNNGDVDKACSVEEH  447 (874)
Q Consensus       382 -----Gv~P-------d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~-Pd~-~tYn~LI~a~~k~G~~~~A~~l~~e  447 (874)
                           |-.|       +...|+-.++.--..|-++....+++.|....+. |-+ ..|.-+   +-.+..+++++++++.
T Consensus       460 ~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmf---LEeh~yfeesFk~YEr  536 (835)
T KOG2047|consen  460 LEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMF---LEEHKYFEESFKAYER  536 (835)
T ss_pred             hhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHH---HHhhHHHHHHHHHHHc
Confidence                 1111       2344566666666777788888888888766542 211 112111   2245667888888765


Q ss_pred             HHHcCCCCCH-HHHHHHHHHHH-hcC--CchHHHHHHHHHHhcCCCCChh
Q 002846          448 MLEHGVYPEE-PELEALLRVSV-EAG--KGDRVYYLLHKLRTSVRKVSPS  493 (874)
Q Consensus       448 M~~~Gv~Pd~-~ty~~LI~~~~-~~G--~~d~A~~ll~~M~~~~~~~sp~  493 (874)
                      =+.-=-.|++ ..|++-+.-+. +-|  .+++|..||++..+.   ++|.
T Consensus       537 gI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~---Cpp~  583 (835)
T KOG2047|consen  537 GISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDG---CPPE  583 (835)
T ss_pred             CCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc---CCHH
Confidence            3332223444 35565554443 333  578999999998884   4465

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=82.06  E-value=20  Score=44.38  Aligned_cols=120  Identities=18%  Similarity=0.187  Sum_probs=92.7

Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCCh
Q 002846          361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAM--SMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDV  438 (874)
Q Consensus       361 ~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~--~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~  438 (874)
                      .....+++..|+.....+.++  .|| ..|..++.++.  +.|+.++|..+++.....+.. |..|...+-..|-..|..
T Consensus        18 d~ld~~qfkkal~~~~kllkk--~Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~   93 (932)
T KOG2053|consen   18 DLLDSSQFKKALAKLGKLLKK--HPN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKL   93 (932)
T ss_pred             HHhhhHHHHHHHHHHHHHHHH--CCC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhh
Confidence            344567888999988877765  244 34556666654  789999999999988766554 889999999999999999


Q ss_pred             hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          439 DKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       439 ~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      ++|..+|++....  .|+..-...+..+|.|.+.+.+--+.=-+|-+.
T Consensus        94 d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~  139 (932)
T KOG2053|consen   94 DEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN  139 (932)
T ss_pred             hHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999998764  488888889999999998876544444444433

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.93  E-value=13  Score=39.93  Aligned_cols=135  Identities=12%  Similarity=0.055  Sum_probs=101.4

Q ss_pred             chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHH----
Q 002846          356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV----  431 (874)
Q Consensus       356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a----  431 (874)
                      ++++..+.-.+.+.-...++++..+..-+-+.+....|.+.-.+.||.+.|...|+...+..-+.|-.+++.++..    
T Consensus       181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~  260 (366)
T KOG2796|consen  181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF  260 (366)
T ss_pred             HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence            5666666566677778888999988877788899999999999999999999999988766555666666665542    


Q ss_pred             -HHhCCChhHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHhcCCchHHHHHHHHHHhcCCCCChhHHH
Q 002846          432 -FCNNGDVDKACSVEEHMLEHGVYPEEPEL---EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTAD  496 (874)
Q Consensus       432 -~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty---~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~T~~  496 (874)
                       |.-..+...|...|++.....  |....|   -+|+..|  .|+..+|.+.+..|...  -|.|.+-+
T Consensus       261 i~lg~nn~a~a~r~~~~i~~~D--~~~~~a~NnKALcllY--lg~l~DAiK~~e~~~~~--~P~~~l~e  323 (366)
T KOG2796|consen  261 LHLGQNNFAEAHRFFTEILRMD--PRNAVANNNKALCLLY--LGKLKDALKQLEAMVQQ--DPRHYLHE  323 (366)
T ss_pred             heecccchHHHHHHHhhccccC--CCchhhhchHHHHHHH--HHHHHHHHHHHHHHhcc--CCccchhh
Confidence             334578889999998887653  222222   3555555  58899999999999988  77776444

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=80.67  E-value=19  Score=35.90  Aligned_cols=83  Identities=10%  Similarity=0.030  Sum_probs=34.4

Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHH
Q 002846          363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKAC  442 (874)
Q Consensus       363 ~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~  442 (874)
                      ...|++++|..+|+-+..-. .-+..-|-.|--++-..|++++|++.+........ -|.+.|-.+=.++...|+.+.|.
T Consensus        46 y~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~~A~  123 (157)
T PRK15363         46 MEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVCYAI  123 (157)
T ss_pred             HHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHHHH
Confidence            34455555555554444322 11222233333333344455555555544443321 22333333334444444444444


Q ss_pred             HHHHH
Q 002846          443 SVEEH  447 (874)
Q Consensus       443 ~l~~e  447 (874)
                      +-|+.
T Consensus       124 ~aF~~  128 (157)
T PRK15363        124 KALKA  128 (157)
T ss_pred             HHHHH
Confidence            44443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=80.59  E-value=20  Score=34.09  Aligned_cols=90  Identities=21%  Similarity=0.203  Sum_probs=65.7

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCC--cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC---HHHH-HHHHHHH
Q 002846          394 GRMAMSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE---EPEL-EALLRVS  467 (874)
Q Consensus       394 I~~~~~~G~~d~A~~l~~~M~~~Gi~Pd--~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd---~~ty-~~LI~~~  467 (874)
                      ..++-..|+.++|..++++-...|+...  ...+--+=..|-..|+.++|..++++....-  |+   .... ..+--++
T Consensus         8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L   85 (120)
T PF12688_consen    8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALAL   85 (120)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHH
Confidence            3456678999999999999999887655  3345556677788999999999999887642  44   2121 2222356


Q ss_pred             HhcCCchHHHHHHHHHHh
Q 002846          468 VEAGKGDRVYYLLHKLRT  485 (874)
Q Consensus       468 ~~~G~~d~A~~ll~~M~~  485 (874)
                      ...|+.++|+..+-....
T Consensus        86 ~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   86 YNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHCCCHHHHHHHHHHHHH
Confidence            788999999998876554

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=80.43  E-value=9.6  Score=31.82  Aligned_cols=17  Identities=18%  Similarity=0.319  Sum_probs=6.8

Q ss_pred             HhcCChhHHHHHHHHHH
Q 002846          398 MSMGDGDMAFDMVKRMK  414 (874)
Q Consensus       398 ~~~G~~d~A~~l~~~M~  414 (874)
                      .+.+++++|.++++.+.
T Consensus         6 ~~~~~~~~A~~~~~~~l   22 (73)
T PF13371_consen    6 LQQEDYEEALEVLERAL   22 (73)
T ss_pred             HhCCCHHHHHHHHHHHH
Confidence            33344444444444333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	874
4g24_A	501	Crystal Structure Of Proteinaceous Rnase P 1 (Prorp		1e-122
4g23_A	501	Crystal Structure Of Proteinaceous Rnase P 1 (Prorp		1e-115

>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From A. Thaliana With Mn Length = 501

Iteration: 1
 Score =  436 bits (1120), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 216/424 (50%), Positives = 288/424 (67%), Gaps = 2/424 (0%)
Query: 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN 419
           +E +      RGF+I+++M +D+V  NEA+ T   R+A++  D +MAFDMVK+MK+ GI 
Sbjct: 78  TESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ 137
Query: 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479
           PRLRSYGPAL  FC  GD DKA  V+ HM+E  V PEEPEL ALL+VS++    D+VY  
Sbjct: 138 PRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKT 197
Query: 480 LHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENXXXXXXXXXXXXX 539
           L +LR  VR+VS ST D+I +WF S+ A + G KKW+   I+D + +             
Sbjct: 198 LQRLRDLVRQVSKSTFDMIEEWFKSEVATKTGVKKWDVKKIRDAVVSGGGGWHGQGWLGT 257
Query: 540 XXXIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWL 599
               V  T +  + +CKCC EKL  ID++P+ETE FA S+  +A +RE  ++F +FQ+WL
Sbjct: 258 GKWNVKRTEMDENGVCKCCKEKLVCIDINPVETETFAASLTRLACEREVKANFNQFQEWL 317
Query: 600 DYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMD 659
           + +GPF+AV+D AN+GL +QR+F   ++N  V   +Q  PSK+ PL++LH  R+ G    
Sbjct: 318 ERHGPFDAVIDGANMGLVNQRSFSFFQLNNTVQRCQQISPSKRLPLVILHKSRVNGGPAT 377
Query: 660 QPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFF 719
            P NRAL+EKWKNA ALYATP GSNDDWYWLYAA+  KCLLVTNDEMRDH FQLLGN FF
Sbjct: 378 YPKNRALLEKWKNAGALYATPPGSNDDWYWLYAAVSCKCLLVTNDEMRDHLFQLLGNSFF 437
Query: 720 PRWKERHQVRFSFS-DAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVT 778
           PRWKE+HQVR S + + G +  MPPP S+VIQESE G WH+P++ + D     R+WLC  
Sbjct: 438 PRWKEKHQVRISVTREDGLKLNMPPPYSIVIQESEDGTWHVPMSVEDDL-QTSRQWLCAK 496
Query: 779 RANS 782
           R+ +
Sbjct: 497 RSKT 500

>pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From A. Thaliana With Mn Length = 501

Iteration: 1
 Score =  413 bits (1062), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 209/424 (49%), Positives = 276/424 (65%), Gaps = 2/424 (0%)
Query: 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN 419
           +E +      RGF+I+++  +D+V  NEA+ T   R+A++  D + AFD VK+ K+ GI 
Sbjct: 78  TESSPNPGLSRGFDIFKQXIVDKVVPNEATFTNGARLAVAKDDPEXAFDXVKQXKAFGIQ 137
Query: 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479
           PRLRSYGPAL  FC  GD DKA  V+ H +E  V PEEPEL ALL+VS +    D+VY  
Sbjct: 138 PRLRSYGPALFGFCRKGDADKAYEVDAHXVESEVVPEEPELAALLKVSXDTKNADKVYKT 197
Query: 480 LHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENXXXXXXXXXXXXX 539
           L +LR  VR+VS ST D I +WF S+ A + G KKW+   I+D + +             
Sbjct: 198 LQRLRDLVRQVSKSTFDXIEEWFKSEVATKTGVKKWDVKKIRDAVVSGGGGWHGQGWLGT 257
Query: 540 XXXIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWL 599
               V  T    + +CKCC EKL  ID++P+ETE FA S+  +A +RE  ++F +FQ+WL
Sbjct: 258 GKWNVKRTEXDENGVCKCCKEKLVCIDINPVETETFAASLTRLACEREVKANFNQFQEWL 317
Query: 600 DYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMD 659
           + +GPF+AV+D AN GL +QR+F   ++N  V   +Q  PSK+ PL++LH  R+ G    
Sbjct: 318 ERHGPFDAVIDGANXGLVNQRSFSFFQLNNTVQRCQQISPSKRLPLVILHKSRVNGGPAT 377
Query: 660 QPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFF 719
            P NRAL+EKWKNA ALYATP GSNDDWYWLYAA+  KCLLVTNDE RDH FQLLGN FF
Sbjct: 378 YPKNRALLEKWKNAGALYATPPGSNDDWYWLYAAVSCKCLLVTNDEXRDHLFQLLGNSFF 437
Query: 720 PRWKERHQVRFSFS-DAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVT 778
           PRWKE+HQVR S + + G +   PPP S+VIQESE G WH+P + + D     R+WLC  
Sbjct: 438 PRWKEKHQVRISVTREDGLKLNXPPPYSIVIQESEDGTWHVPXSVEDDL-QTSRQWLCAK 496
Query: 779 RANS 782
           R+ +
Sbjct: 497 RSKT 500

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	874
3v32_B	185	Ribonuclease ZC3H12A; rossmann-like sandwich fold,	6e-22
3v33_A	223	Ribonuclease ZC3H12A; rossmann-like sandwich fold,	2e-17
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>3v32_B Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} PDB: 3v34_A Length = 185

 Score = 93.2 bits (231), Expect = 6e-22
 Identities = 27/147 (18%), Positives = 58/147 (39%), Gaps = 17/147 (11%)

Query: 608 VVDAANVGLY--SQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRA 665
           V+D +NV +   ++  F    +   VN   ++       + V   R+          ++ 
Sbjct: 28  VIDGSNVAMSHGNKEVFSCRGILLAVNWFLERGH-TDITVFVPSWRKEQPRPDVPITDQH 86

Query: 666 LIEKWKNADALYATPTG--------SNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGND 717
           ++ + +    L  TP+           DD + +  A +   ++V+ND  RD   +     
Sbjct: 87  ILRELEKKKILVFTPSRRVGGKRVVCYDDRFIVKLAYESDGIVVSNDTYRDLQGE---RQ 143

Query: 718 FFPRWKERHQVRFSFSDAGPEFYMPPP 744
            + R+ E   + +SF +   + +MPP 
Sbjct: 144 EWKRFIEERLLMYSFVN---DKFMPPD 167

>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} Length = 223

 Score = 81.3 bits (200), Expect = 2e-17
 Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 17/147 (11%)

Query: 608 VVDAANVGLY--SQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRA 665
           V+D +NV +   ++  F    +   VN   ++       + V   R+          ++ 
Sbjct: 28  VIDGSNVAMSHGNKEVFSCRGILLAVNWFLERGH-TDITVFVPSWRKEQPRPDVPITDQH 86

Query: 666 LIEKWKNADALYATP--------TGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGND 717
           ++ + +    L  TP            DD + +  A +   ++V+ND  RD   +     
Sbjct: 87  ILRELEKKKILVFTPSRRVGGKRVVCYDDRFIVKLAYESDGIVVSNDTYRDLQGE---RQ 143

Query: 718 FFPRWKERHQVRFSFSDAGPEFYMPPP 744
            + R+ E   + +SF +     +MPP 
Sbjct: 144 EWKRFIEERLLMYSFVND---KFMPPD 167

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 5e-08
 Identities = 97/694 (13%), Positives = 190/694 (27%), Gaps = 223/694 (32%)

Query: 152 NREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKK------DRSEQF---QLRVELDMCS 202
             E+D+  +  +   SG  ++      K  +  +K        + +F    ++ E     
Sbjct: 48  KEEIDH-IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE---QR 103

Query: 203 KRGDVMGAIRLY----DKAQREGIKLGQYHY----------NVLLYLCSSAAVGVVKPAK 248
           +   +    R+Y    D+   +     +Y+             LL L  +  V +     
Sbjct: 104 QPSMMT---RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID---- 156

Query: 249 SGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFN 308
              G+               LG             G + +              +    +
Sbjct: 157 ---GV---------------LG------------SGKTWVA-----LDVCLSYKVQCKMD 181

Query: 309 EKENLGQF--SNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKY 366
                  F  +  +      +L+    L    D      +W+  +  +  I+L   + + 
Sbjct: 182 ----FKIFWLNLKNCNSPETVLEMLQKLLYQID-----PNWTSRSDHSSNIKLRIHSIQA 232

Query: 367 AFQRGF--EIYEKMCL---DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR 421
             +R    + YE  CL     V     +  A             AF++    K L +  R
Sbjct: 233 ELRRLLKSKPYEN-CLLVLLNV----QNAKAWN-----------AFNL--SCKIL-LTTR 273

Query: 422 LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLL 480
            +       V     D   A +     L+H        E+++LL   ++    D      
Sbjct: 274 FKQ------VT----DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD------ 317

Query: 481 HKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKG 540
             L   V   +P    +IA      E+ R G   W+                   W    
Sbjct: 318 --LPREVLTTNPRRLSIIA------ESIRDGLATWDN------------------WKHVN 351

Query: 541 KWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEK-------FAESVASIAIKRERNSSFQ 593
              ++               + ++  L+P E  K       F  S   I           
Sbjct: 352 CDKLTTII------------ESSLNVLEPAEYRKMFDRLSVFPPSA-HIPTIL-----LS 393

Query: 594 KFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWP---LIVLHN 650
               W D       V+                    VVN + +    +K P    I + +
Sbjct: 394 LI--WFD--VIKSDVMV-------------------VVNKLHKYSLVEKQPKESTISIPS 430

Query: 651 --RRITGHKMDQP-VNRALIEKWKNADAL-YATPTGSNDDWYWLYAAIKFKCLLVTNDEM 706
               +     ++  ++R++++ +                D Y+ Y+ I      + + E 
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF-YSHIGHHLKNIEHPE- 488

Query: 707 RDHTFQLLGNDFFPRW---KERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIAS 763
           R   F+++  DF  R+   K RH            +         +Q+ +    +I    
Sbjct: 489 RMTLFRMVFLDF--RFLEQKIRH--------DSTAWNASGSILNTLQQLKFYKPYI---- 534

Query: 764 KQDYDDEERRWLCVTRANSHMNRQNSYSSP-KDL 796
             D D +  R +           +N   S   DL
Sbjct: 535 -CDNDPKYERLVNAILDFLPKIEENLICSKYTDL 567

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.2 bits (132), Expect = 9e-08
 Identities = 78/565 (13%), Positives = 158/565 (27%), Gaps = 173/565 (30%)

Query: 8   NTLQQQNQLFSLTLCKSSPPTLTVFNFQFLSRFLSSSPPKRTPLLVFKAHVRNTQAKLST 67
           + +    +LF   L K           + + +F+          L+        Q  + T
Sbjct: 59  DAVSGTLRLFWTLLSKQE---------EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109

Query: 68  TETEHETSTVTLRTRKGTASGASSLGTRDKRVDSAGEEKDGKRLTKDNNSRKNFAFLKSR 127
                +                     RD+         D +   K N SR    +LK R
Sbjct: 110 RMYIEQ---------------------RDRL------YNDNQVFAKYNVSRLQ-PYLKLR 141

Query: 128 EMSSGNSSLRSKDKKIGI-------KSSKTVNREVDNQKMEQRTNDSGQY--KVRGITDE 178
           +       LR   K + I       K+   +  +V      Q   D   +   +      
Sbjct: 142 QALL---ELRP-AKNVLIDGVLGSGKTWVAL--DVCLSYKVQCKMDFKIFWLNL------ 189

Query: 179 KGSKKSKKDRSEQFQ---LRVELDMCSKRGDVMGAIRLYDKAQREGIK---LGQYHYNVL 232
             +  S +   E  Q    +++ +  S R D    I+L   + +  ++     + + N L
Sbjct: 190 -KNCNSPETVLEMLQKLLYQIDPNWTS-RSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247

Query: 233 LYL---CSSAAVGVVKPAKSGSGMRTLDTFEVS--TMNSTELGDSRDMDNNGQLDYGSSP 287
           L L    ++               +  + F +S   + +T     R              
Sbjct: 248 LVLLNVQNA---------------KAWNAFNLSCKILLTT-----RFKQV---------- 277

Query: 288 MIDKLESNSSYRF--DDLDSTFNEKENLGQFSNG-HMK---LNSQLLDGRSNL------E 335
             D L + ++     D    T    E           +   L  ++L   +        E
Sbjct: 278 -TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT-NPRRLSIIAE 335

Query: 336 RGPDDQSRKKDW--------------SIDNQDADEIRLSEDAKKYA----FQRGFEIYEK 377
              D  +   +W              S++  +  E R     K +     F     I   
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR-----KMFDRLSVFPPSAHIPTI 390

Query: 378 -MCL---------DEVPMNE---ASLTAVGRMAMSMGDGDMAFDM-VKRMKSLGINPRLR 423
            + L           V +N+    SL        ++    +  ++ VK      ++  + 
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450

Query: 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVY----PEEPELEALLRVSVEAGKGDRVY-- 477
            +      F ++  +     ++++   H  +     E PE   L R          V+  
Sbjct: 451 DHYNIPKTFDSDDLIPP--YLDQYFYSHIGHHLKNIEHPERMTLFR---------MVFLD 499

Query: 478 --YLLHKLR--TSVRKVSPSTADVI 498
             +L  K+R  ++    S S  + +
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTL 524

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 2e-04
 Identities = 91/677 (13%), Positives = 174/677 (25%), Gaps = 210/677 (31%)

Query: 275 MD-NNGQLDYGSSPMIDKLESNSSYRF-DDLDSTFNEKENLGQFSNGHMKLNSQLLDGRS 332
           MD   G+  Y    ++   E      F D+ D    +       S   +     ++    
Sbjct: 7   MDFETGEHQYQYKDILSVFEDA----FVDNFDCKDVQDMPKSILSKEEID---HIIM--- 56

Query: 333 NLERGPDDQSRKKDWSIDNQDADEI-RLSEDA--KKYAFQRGFEIYEKM---CLDEVPMN 386
              +     + +  W++ ++  + + +  E+     Y F     +   +         M 
Sbjct: 57  --SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF-----LMSPIKTEQRQPSMMT 109

Query: 387 EASLTAVGRMAMSMGDGDMAFDM-VKRMKS-LGINPRLRSYGPALSVF------CNNGDV 438
              +    R+     D  +     V R++  L +   L    PA +V          G  
Sbjct: 110 RMYIEQRDRL---YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS--G-- 162

Query: 439 DKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL--------------LHKLR 484
            K                   L+  L   V+     ++++L              L KL 
Sbjct: 163 -KTWVA---------------LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206

Query: 485 TSVRKVSPSTADVIAKWFNSKEAAR------LGKKKWNESL-IKDTMENKGGGWH----- 532
             +     S +D  +       + +      L  K +   L +   ++N           
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA---KAWNAFN 263

Query: 533 ----------------GLGWLGKGKWIVSHTTVG-----GDALC-KCCGEKLAIIDLDPI 570
                            L         + H ++        +L  K    +    DL P 
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ--DL-PR 320

Query: 571 ETEKFAESVASI--AIKRERNSSFQKFQKWLDY-YGPFEAVVDAANVGLYSQRNFKPARV 627
           E         SI     R+  +    +  W          ++++      S    +PA  
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLA---TWDNWKHVNCDKLTTIIES------SLNVLEPAE- 370

Query: 628 NAVVNGIRQK------FP-SKKWPLIVL------HNRRITGHKMDQPVNRALIEKWKNAD 674
                  R+       FP S   P I+L        +      +++    +L+EK     
Sbjct: 371 ------YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424

Query: 675 ALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFSFSD 734
            +             +Y  +K K      +E   H   ++ +   P+        F   D
Sbjct: 425 TISI---------PSIYLELKVKL----ENEYALHR-SIVDHYNIPK-------TFDSDD 463

Query: 735 AGPE-----FYMPPPCSVVIQESEKGNWHIP----IASKQDYDDEER------RWLCVTR 779
             P      FY                 HI          +     R      R+L    
Sbjct: 464 LIPPYLDQYFY----------------SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI 507

Query: 780 ANSHMNRQNSYSSPKDLQPLDHNKGQASSSTRADAKTKSHSSNDSPSVNTKRPARKMYKN 839
            +       S S    LQ L                 K +  ++ P    +R    +   
Sbjct: 508 RHDSTAWNASGSILNTLQQLK--------------FYKPYICDNDPKY--ERLVNAILDF 551

Query: 840 LKNILSASVLSNHQSVL 856
           L  I    + S +  +L
Sbjct: 552 LPKIEENLICSKYTDLL 568

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	874
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.98
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.87
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.86
3v33_A	223	Ribonuclease ZC3H12A; rossmann-like sandwich fold,	99.8
3v32_B	185	Ribonuclease ZC3H12A; rossmann-like sandwich fold,	99.78
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.77
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.76
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.55
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.53
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.48
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.45
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.22
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.17
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.17
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.16
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.16
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.16
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.13
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.05
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.04
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	98.99
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.96
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.95
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.92
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	98.91
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	98.89
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	98.89
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	98.88
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.79
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	98.75
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	98.75
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.72
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.62
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.61
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	98.61
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.59
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	98.56
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.54
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.47
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	98.46
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	98.45
3u4t_A	272	TPR repeat-containing protein; structural genomics	98.39
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.3
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	98.3
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.28
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.27
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.26
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.24
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.22
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	98.19
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.15
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.1
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.1
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	98.09
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.08
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.06
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.04
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.03
3u4t_A	272	TPR repeat-containing protein; structural genomics	98.03
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.02
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	97.99
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	97.94
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	97.92
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	97.92
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	97.83
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	97.82
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	97.81
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	97.81
4g1t_A	472	Interferon-induced protein with tetratricopeptide	97.81
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	97.74
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	97.73
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	97.71
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.68
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	97.65
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	97.49
4g1t_A	472	Interferon-induced protein with tetratricopeptide	97.49
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	97.43
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	97.42
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	97.41
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	97.26
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	97.24
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.22
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	97.22
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	97.19
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	97.16
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	97.16
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	97.14
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	97.1
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.08
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	97.03
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	96.99
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	96.95
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	96.89
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	96.87
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	96.76
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	96.75
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	96.73
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	96.72
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	96.72
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	96.71
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	96.67
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	96.66
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	96.65
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	96.53
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	96.46
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	96.44
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	96.44
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	96.43
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	96.42
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	96.41
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	96.41
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	96.33
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	96.3
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	96.3
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	96.25
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	96.23
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.15
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	96.15
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	96.13
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	96.13
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	96.12
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	96.11
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	96.06
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	96.06
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	96.05
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	96.01
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	95.98
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	95.95
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	95.94
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	95.93
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	95.78
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	95.72
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	95.71
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	95.7
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	95.69
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	95.63
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	95.63
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	95.58
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	95.53
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	95.52
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	95.51
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	95.51
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	95.48
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	95.48
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	95.42
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	95.41
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	95.41
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	95.33
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	95.31
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	95.28
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	95.23
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	95.11
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	95.11
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	95.05
3k9i_A	117	BH0479 protein; putative protein binding protein,	95.04
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	95.03
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	95.0
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	94.93
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	94.91
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	94.75
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	94.75
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	94.65
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	94.41
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	94.33
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	94.21
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	93.91
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	93.73
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	93.59
3k9i_A	117	BH0479 protein; putative protein binding protein,	93.55
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	93.31
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	93.14
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	93.12
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	93.12
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	93.02
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	92.74
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	92.74
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	92.7
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	92.42
2l6j_A	111	TPR repeat-containing protein associated with HSP;	92.19
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	91.91
2kat_A	115	Uncharacterized protein; NESG, structure, structur	91.84
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	91.65
1klx_A	138	Cysteine rich protein B; structural genomics, heli	90.93
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	90.9
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	89.79
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	89.64
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	89.63
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	88.41
2kat_A	115	Uncharacterized protein; NESG, structure, structur	88.29
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	87.87
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	87.54
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	87.45
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	86.98
2l6j_A	111	TPR repeat-containing protein associated with HSP;	86.93
1klx_A	138	Cysteine rich protein B; structural genomics, heli	86.57
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	85.06
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	84.21
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	84.18
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	83.98
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	83.92
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	83.87
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	82.94
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	82.44
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	81.18
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	80.47
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	80.39
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	80.06

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=1.2e-99  Score=887.40  Aligned_cols=476  Identities=49%  Similarity=0.875  Sum_probs=450.9

Q ss_pred             hhhhhcCCCC--chhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccc
Q 002846          267 TELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRK  344 (874)
Q Consensus       267 ~em~~~~gi~--d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty  344 (874)
                      +++.++ ++.  |...++.+|++      ||+.|++++|+++|++|.+.|+.||.+||                      
T Consensus        14 ~~~~~k-~~~~spe~~l~~~id~------c~k~G~~~~A~~lf~~M~~~Gv~pd~~ty----------------------   64 (501)
T 4g26_A           14 RKAKKK-AIQQSPEALLKQKLDM------CSKKGDVLEALRLYDEARRNGVQLSQYHY----------------------   64 (501)
T ss_dssp             -----------CHHHHHHHHHHH------TTTSCCHHHHHHHHHHHHHHTCCCCHHHH----------------------
T ss_pred             HHHHHh-cccCCCHHHHHHHHHH------HHhCCCHHHHHHHHHHHHHcCCCCCHhHH----------------------
Confidence            345544 554  66779999999      99999999999999999999999999999                      


Q ss_pred             cccccccCCccchHHHHHHhcCC---------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 002846          345 KDWSIDNQDADEIRLSEDAKKYA---------FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKS  415 (874)
Q Consensus       345 ~~w~i~~~~~~n~lI~~~~k~g~---------~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~  415 (874)
                                 |+||.+|++.+.         +++|+++|++|...|+.||.+|||+||++|++.|++++|.++|++|.+
T Consensus        65 -----------n~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~  133 (501)
T 4g26_A           65 -----------NVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKA  133 (501)
T ss_dssp             -----------HHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             -----------HHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence                       999999998764         789999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCChhHH
Q 002846          416 LGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTA  495 (874)
Q Consensus       416 ~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~T~  495 (874)
                      .|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||..||++||++|++.|++++|+++|++|++.++.|++.||
T Consensus       134 ~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~  213 (501)
T 4g26_A          134 FGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTF  213 (501)
T ss_dssp             TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHH
T ss_pred             cCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999888888899


Q ss_pred             HHHHHHHhcchHHHhhhhhchhHHHHHHHhhcCCcccccccCCCCCceeEeecccccccccccCcccccccCCHHHHHHH
Q 002846          496 DVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKF  575 (874)
Q Consensus       496 ~~I~~~~~s~~~~~a~~~~~d~~~v~ea~~~~G~~~~~m~~~G~~p~~vt~t~vl~~G~C~~c~~~L~~i~l~~ee~~~l  575 (874)
                      ++|..||.+..+...+...|+...+.+++...|++||+++|.|...|.+..+.+...|.|.+|+..|..++|+++|++.|
T Consensus       214 ~~l~~~F~s~~a~~~g~~~~d~~~~~~~~~~~g~~~~~~~~~~~~~w~v~~t~v~~~G~C~~c~~~L~~i~l~~~e~~~l  293 (501)
T 4g26_A          214 DMIEEWFKSEVATKTGVKKWDVKKIRDAVVSGGGGWHGQGWLGTGKWNVKRTEMDENGVCKCCKEKLVCIDINPVETETF  293 (501)
T ss_dssp             HHHHHHHHSHHHHTCCBSCCCHHHHHHHHHHHTSSCCCSCCCBCSCEEEEEECBCTTSBBTTTCCBCCCCCCCHHHHHHH
T ss_pred             HHHHHHHhcCcchhhhhhhhhhhhhhhhHhccCcccccccccccCceeEEeeecccCCCccchhhhhccccCCHHHHHHH
Confidence            99999999988888888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccchHHHHHHHHHHhhcCCcchhhhhhhhhccccCCCChhhHHHHHHHHHHhCCCCCceEEEeccccccC
Q 002846          576 AESVASIAIKRERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITG  655 (874)
Q Consensus       576 ~~~I~~~a~~~~~~~~~~~F~~~l~~~~pyDiVIDGaNv~~~~~~~f~~~~l~~vv~~l~~~~~~~~~~lvvl~~~~~~~  655 (874)
                      .+.|.++++.++++++|+.|++|+++++|||+||||+|||||++++|++.||+.||+.+++..+.+++||||||++|+.+
T Consensus       294 ~~~i~~~~~~~~~~~~~~~F~~~l~~~~p~d~vIDG~NV~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lv~l~~~~~~~  373 (501)
T 4g26_A          294 AASLTRLACEREVKANFNQFQEWLERHGPFDAVIDGANMGLVNQRSFSFFQLNNTVQRCQQISPSKRLPLVILHKSRVNG  373 (501)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHHHTSCCCSEEEEHHHHHHTTCSSCCHHHHHHHHHHHHHHSTTCCCCEEEEEHHHHTS
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHHhcCCchhhhccchhhccccccccHHHHHHHHHHHHHHhhccCCcEEEeehhhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999998889999999999999998


Q ss_pred             CCCCChhhHHHHHHHHhcCceEecCCCCCccHHHHHHHHhcCceEEeCcccccccccccCCchHHhHhhcCeeEEEecCC
Q 002846          656 HKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFSFSDA  735 (874)
Q Consensus       656 ~~~~~~~~~~~~~~~~~~~~l~~tp~~s~DD~y~LyAa~~~~~~~vsnD~mRdH~~~ll~~~~F~rW~~~hqv~~~~~~~  735 (874)
                      ..+..|.+++++++|++++.+|.||++||||||||||||+.+|+|||||+||||+|+|+++++|+|||++|||+|++++.
T Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~t~~~s~DD~~~lyAal~~~~~~vsnD~mRdH~f~l~~~~~F~rW~~~hq~~~~~~~~  453 (501)
T 4g26_A          374 GPATYPKNRALLEKWKNAGALYATPPGSNDDWYWLYAAVSCKCLLVTNDEMRDHLFQLLGNSFFPRWKEKHQVRISVTRE  453 (501)
T ss_dssp             GGGSSHHHHHHHHHHHHTTCEEEECTTCCHHHHHHHHHHHHTCEEECCCCCCSGGGGGGTTTHHHHHHHHHEEEEEEETT
T ss_pred             cccCCHHHHHHHHHHHhcCeEEeCCCCCCchHHHHHHHHccCCEEEeccccccchhccCCcHHHHHHHhcCeEEEEecCC
Confidence            88889999999999999999999999999999999999999999999999999999999999999999999999998754


Q ss_pred             -CCccccCCCCceeeEecCCCceEecccCCCCCCCCCCceEEEecCCCc
Q 002846          736 -GPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTRANSH  783 (874)
Q Consensus       736 -~~~~~~p~~y~~~iQ~~~~~~WHiP~~~~~~~e~~~~~WlC~~~~~~~  783 (874)
                       +++|++|+||+++||++++++|||||.+++++|+| ++|||++|.+.+
T Consensus       454 ~~~~~~~p~~~~~~~q~~~~~~WHiP~~~~~~~~~~-~~WlC~~r~~~~  501 (501)
T 4g26_A          454 DGLKLNMPPPYSIVIQESEDGTWHVPMSVEDDLQTS-RQWLCAKRSKTP  501 (501)
T ss_dssp             TEEEEECCCSSCCSCEECTTSCEEEEBCCSCTTTSC-CCEEEEEECC--
T ss_pred             CCceeccCCCCceeeeecCCCceEecccCCCCCCCC-CeeEeeccCCCC
Confidence             69999999999999999888999999999999995 999999998653

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.98  E-value=3.5e-32  Score=317.58  Aligned_cols=216  Identities=23%  Similarity=0.277  Sum_probs=186.6

Q ss_pred             HHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCccc
Q 002846          168 GQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPA  247 (874)
Q Consensus       168 ~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~  247 (874)
                      .+..+..+|..++    ....|+ ..++.+|++|||.|++++|+++|++|.+.|++||.+|||+||++|+.++       
T Consensus         8 ~~e~L~~~~~~k~----~~~spe-~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~-------   75 (501)
T 4g26_A            8 PSENLSRKAKKKA----IQQSPE-ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAE-------   75 (501)
T ss_dssp             --------------------CHH-HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCC-------
T ss_pred             hHHHHHHHHHHhc----ccCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCC-------
Confidence            4555666663322    223344 6789999999999999999999999999999999999999999999432       


Q ss_pred             CCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccH
Q 002846          248 KSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQL  327 (874)
Q Consensus       248 k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~  327 (874)
                         ..                  .               .      .++.+.++.|.++|++|...|+.||.+||     
T Consensus        76 ---~~------------------~---------------~------~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty-----  108 (501)
T 4g26_A           76 ---AA------------------T---------------E------SSPNPGLSRGFDIFKQMIVDKVVPNEATF-----  108 (501)
T ss_dssp             ---CC------------------S---------------S------SSCCHHHHHHHHHHHHHHHTTCCCCHHHH-----
T ss_pred             ---ch------------------h---------------h------hhhcchHHHHHHHHHHHHHhCCCCCHHHH-----
Confidence               10                  0               0      45567789999999999999999999999     


Q ss_pred             HHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 002846          328 LDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAF  407 (874)
Q Consensus       328 ~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~  407 (874)
                                                  |+||.+|++.|++++|.++|++|.+.|+.||..|||+||.+||+.|++++|.
T Consensus       109 ----------------------------n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~  160 (501)
T 4g26_A          109 ----------------------------TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAY  160 (501)
T ss_dssp             ----------------------------HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ----------------------------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHH
Confidence                                        9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 002846          408 DMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA  470 (874)
Q Consensus       408 ~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~  470 (874)
                      ++|++|.+.|+.||..||++||.+||+.|++++|+++|++|.+.|+.|+..||++|+..|+..
T Consensus       161 ~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          161 EVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             HHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999999999999864

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.87  E-value=1.8e-20  Score=219.87  Aligned_cols=289  Identities=9%  Similarity=-0.049  Sum_probs=211.5

Q ss_pred             cchhhhhhhchHHHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 002846          147 SSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ  226 (874)
Q Consensus       147 ~~~~~~~~l~~~~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~  226 (874)
                      ....++..+.  .+.+.++.++|..+|++|..        ..|+..+|..+..+|.+.|++++|+.+|+.+..  ..++.
T Consensus        83 ~~~~~~~~~~--~~~~~g~~~~A~~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~  150 (597)
T 2xpi_A           83 REDYLRLWRH--DALMQQQYKCAAFVGEKVLD--------ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSS  150 (597)
T ss_dssp             HHHHHHHHHH--HHHHTTCHHHHHHHHHHHHH--------HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCH
T ss_pred             HHHHHHHHHH--HHHHccCchHHHHHHHHHHh--------hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccch
Confidence            3445566655  67788999999999999953        345668999999999999999999999999864  37899


Q ss_pred             HHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcC--------------CCC-chhhhHhhhcCcccC
Q 002846          227 YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSR--------------DMD-NNGQLDYGSSPMIDK  291 (874)
Q Consensus       227 ~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~--------------gi~-d~vtyn~LI~~~~~~  291 (874)
                      .+++.++.+|+          +.|++++|..+|+       ++....              +.+ +..+|+.++.+    
T Consensus       151 ~~~~~l~~~~~----------~~g~~~~A~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----  209 (597)
T 2xpi_A          151 ACRYLAAFCLV----------KLYDWQGALNLLG-------ETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQV----  209 (597)
T ss_dssp             HHHHHHHHHHH----------HTTCHHHHHHHHC-------SSCTTC----------CCCSSCCHHHHHHHHHHHH----
T ss_pred             hHHHHHHHHHH----------HHhhHHHHHHHHh-------ccCCccccccccccccccccccchhHHHHHHHHHH----
Confidence            99999999999          8999999999995       222211              223 57889999999    


Q ss_pred             hhhhhcCChHHHHHHHHHHHHcCCCCCeee----------------------------------------------ec-c
Q 002846          292 LESNSSYRFDDLDSTFNEKENLGQFSNGHM----------------------------------------------KL-N  324 (874)
Q Consensus       292 ~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~t----------------------------------------------y~-~  324 (874)
                        |++.|++++|.++|++|...+  |+...                                              |. .
T Consensus       210 --~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (597)
T 2xpi_A          210 --YTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHE  285 (597)
T ss_dssp             --HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTH
T ss_pred             --HHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCc
Confidence              999999999999999998865  33211                                              11 6


Q ss_pred             ccHHHHHHhhhcC---CCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 002846          325 SQLLDGRSNLERG---PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG  401 (874)
Q Consensus       325 g~~~eA~~l~~~m---~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G  401 (874)
                      |++++|..+|+++   .++..+|           +.++..|.+.|++++|.++|++|...+ +.+..+|+.++.+|.+.|
T Consensus       286 g~~~~A~~~~~~~~~~~~~~~~~-----------~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g  353 (597)
T 2xpi_A          286 DELRRAEDYLSSINGLEKSSDLL-----------LCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESG  353 (597)
T ss_dssp             HHHHHHHHHHHTSTTGGGCHHHH-----------HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHhhcCCchHHHH-----------HHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhC
Confidence            7888899999988   3678888           889999999999999999999888654 225555666666666666


Q ss_pred             ChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHH
Q 002846          402 DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLH  481 (874)
Q Consensus       402 ~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~  481 (874)
                      ++++|.+++++|.+. ...+..+|+.+..+|++.|++++|.++|++|.+.. ..+..+|+.|+.+|++.|++++|.++|+
T Consensus       354 ~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~  431 (597)
T 2xpi_A          354 EKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYT  431 (597)
T ss_dssp             CHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            666666666666543 22345566666666666666666666666665432 1235566666666666666666666666


Q ss_pred             HHHhc
Q 002846          482 KLRTS  486 (874)
Q Consensus       482 ~M~~~  486 (874)
                      +|...
T Consensus       432 ~~~~~  436 (597)
T 2xpi_A          432 TAARL  436 (597)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            66554

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.86  E-value=6.8e-20  Score=214.95  Aligned_cols=308  Identities=12%  Similarity=-0.025  Sum_probs=183.8

Q ss_pred             cchhhhhhhchHHHHhcCChhHHHHHHHHHhhCC---------CCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002846          147 SSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKG---------SKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKA  217 (874)
Q Consensus       147 ~~~~~~~~l~~~~~~k~~~~~~A~~vf~eM~~~g---------~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M  217 (874)
                      ...+++....  .+.+.++.++|.++|+++....         ...+.+..++..+|+.++.+|.+.|++++|+++|++|
T Consensus       149 ~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  226 (597)
T 2xpi_A          149 SSACRYLAAF--CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEA  226 (597)
T ss_dssp             CHHHHHHHHH--HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             chhHHHHHHH--HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3445555554  7788999999999999642111         0011244567899999999999999999999999999


Q ss_pred             HHcCCCCCHHHHHHHHHHHHhc----------------------------ccCCCcccCCCCHHHHHHHHhhcccCchhh
Q 002846          218 QREGIKLGQYHYNVLLYLCSSA----------------------------AVGVVKPAKSGSGMRTLDTFEVSTMNSTEL  269 (874)
Q Consensus       218 ~~~Gi~pd~~tyn~LL~a~~~~----------------------------~~~~~~~~k~G~~~~A~~vf~v~~~~s~em  269 (874)
                      .+.+.. +...+..+...+...                            ...+..+.+.|++++|..+|.       ++
T Consensus       227 ~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~-------~~  298 (597)
T 2xpi_A          227 LMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS-------SI  298 (597)
T ss_dssp             HHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH-------TS
T ss_pred             HHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH-------Hh
Confidence            875421 223333222111000                            000112336677777777774       33


Q ss_pred             hhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeee---------------------------
Q 002846          270 GDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMK---------------------------  322 (874)
Q Consensus       270 ~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty---------------------------  322 (874)
                      .+.  -.+..+|+.++.+      |++.|++++|.++|++|...+-. +..++                           
T Consensus       299 ~~~--~~~~~~~~~l~~~------~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  369 (597)
T 2xpi_A          299 NGL--EKSSDLLLCKADT------LFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH  369 (597)
T ss_dssp             TTG--GGCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             hcC--CchHHHHHHHHHH------HHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Confidence            332  1256667777777      77777777777777777655411 22222                           


Q ss_pred             -------c--------cccHHHHHHhhhcC---CC-CcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 002846          323 -------L--------NSQLLDGRSNLERG---PD-DQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEV  383 (874)
Q Consensus       323 -------~--------~g~~~eA~~l~~~m---~p-d~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv  383 (874)
                             +        .|++++|..+|+++   .| +..+|           +.++..|++.|++++|.++|++|...+ 
T Consensus       370 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----------~~l~~~~~~~g~~~~A~~~~~~~~~~~-  437 (597)
T 2xpi_A          370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAW-----------IGFAHSFAIEGEHDQAISAYTTAARLF-  437 (597)
T ss_dssp             TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH-----------HHHHHHHHHHTCHHHHHHHHHHHHHTT-
T ss_pred             cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHH-----------HHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence                   2        55566666666555   22 34455           566666666666666666666665543 


Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHc----CCCCC--H
Q 002846          384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH----GVYPE--E  457 (874)
Q Consensus       384 ~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~----Gv~Pd--~  457 (874)
                      +.+..+|+.++.+|.+.|++++|.++|++|.+.. ..+..+|+.+...|++.|++++|.++|++|.+.    +..|+  .
T Consensus       438 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~  516 (597)
T 2xpi_A          438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWA  516 (597)
T ss_dssp             TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGH
T ss_pred             ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHH
Confidence            2355566666666666666666666666665542 234556666666666666666666666666554    55555  5


Q ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          458 PELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       458 ~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      .+|..|..+|.+.|++++|..+|+++.+.
T Consensus       517 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  545 (597)
T 2xpi_A          517 ATWANLGHAYRKLKMYDAAIDALNQGLLL  545 (597)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            56666666666666666666666666554

>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}

Probab=99.80  E-value=3.9e-20  Score=188.24  Aligned_cols=124  Identities=19%  Similarity=0.207  Sum_probs=104.6

Q ss_pred             CcchhhhhhhhhccccC--CCChhhHHHHHHHHHHhCCCCCc-eEEEeccccccC-CCCCChhhHHHHHHHHhcCceEec
Q 002846          604 PFEAVVDAANVGLYSQR--NFKPARVNAVVNGIRQKFPSKKW-PLIVLHNRRITG-HKMDQPVNRALIEKWKNADALYAT  679 (874)
Q Consensus       604 pyDiVIDGaNv~~~~~~--~f~~~~l~~vv~~l~~~~~~~~~-~lvvl~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~t  679 (874)
                      .--|||||+|||++.++  .|+..+|..+|++|.+   .|+. ++|+++..+... +......+++++++|.+.+.|+.|
T Consensus        24 lR~IVIDGsNVA~~~g~~~~Fs~rgI~~aV~yF~~---RGh~~V~VfvP~~r~~~~~~~~~~~d~~~L~~L~k~g~L~~T  100 (223)
T 3v33_A           24 LRPVVIDGSNVAMSHGNKEVFSCRGILLAVNWFLE---RGHTDITVFVPSWRKEQPRPDVPITDQHILRELEKKKILVFT  100 (223)
T ss_dssp             BCCEEEEHHHHHHHSSSTTSEEHHHHHHHHHHHHT---TTCCCEEEEEEGGGGSCCCTTSCEESTHHHHHHHHTTCEEEE
T ss_pred             CCeEEEeCHHHHhhhCCCCCcCHHHHHHHHHHHHH---cCCCceEEEechhhhccccccCCCCcHHHHHHHHHCCCEEEC
Confidence            34689999999998765  6888999999999998   6766 557776655432 223346678999999999999999


Q ss_pred             CCC--------CCccHHHHHHHHhcCceEEeCcccccccccccCCchHHhHhhcCeeEEEec
Q 002846          680 PTG--------SNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFSFS  733 (874)
Q Consensus       680 p~~--------s~DD~y~LyAa~~~~~~~vsnD~mRdH~~~ll~~~~F~rW~~~hqv~~~~~  733 (874)
                      |.+        ++||+|||++|...+++|||||+||||..   ....|.+|.+.|+|.|+|.
T Consensus       101 Ps~~v~G~r~~sydD~~iL~~A~~~~g~IVSND~yRD~~~---e~p~~k~~Ie~rlI~ytFv  159 (223)
T 3v33_A          101 PSRRVGGKRVVCYDDRFIVKLAYESDGIVVSNDTYRDLQG---ERQEWKRFIEERLLMYSFV  159 (223)
T ss_dssp             CEEEETTEEEECCHHHHHHHHHHHTTCEEECSCCCHHHHT---TCHHHHHHHHHHEECCEEE
T ss_pred             CCCCcCCccccccchHHHHHHHHHcCCEEEeCccHHHHHh---hCHHHHHHHHhCeeeEEEE
Confidence            998        89999999999999999999999999985   3456899999999999986

>3v32_B Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} PDB: 3v34_A

Probab=99.78  E-value=1.5e-19  Score=180.18  Aligned_cols=124  Identities=19%  Similarity=0.214  Sum_probs=104.0

Q ss_pred             CcchhhhhhhhhccccC--CCChhhHHHHHHHHHHhCCCCCc-eEEEeccccccC-CCCCChhhHHHHHHHHhcCceEec
Q 002846          604 PFEAVVDAANVGLYSQR--NFKPARVNAVVNGIRQKFPSKKW-PLIVLHNRRITG-HKMDQPVNRALIEKWKNADALYAT  679 (874)
Q Consensus       604 pyDiVIDGaNv~~~~~~--~f~~~~l~~vv~~l~~~~~~~~~-~lvvl~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~t  679 (874)
                      .--+||||+|||++.++  .|+..+|..+|++|.+   .|+. ++|+++..+... +......+++++++|.+.+.++.|
T Consensus        24 lR~IVIDGsNVA~~~g~~~~Fs~rgI~~aV~yf~~---rGh~~v~VfvP~~r~~~~~~~~~~~d~~~L~~L~~~g~l~~T  100 (185)
T 3v32_B           24 LRPVVIDGSNVAMSHGNKEVFSCRGILLAVNWFLE---RGHTDITVFVPSWRKEQPRPDVPITDQHILRELEKKKILVFT  100 (185)
T ss_dssp             BCCEEEEHHHHHHHHTTTTSEEHHHHHHHHHHHHH---TTCCCEEEEEEGGGGSCCCTTSCEECTHHHHHHHHTTCEEEE
T ss_pred             CCeEEEeCHHHHhhhCCCCCcCHHHHHHHHHHHHH---cCCCceEEEechHhhhcccccCCCCCHHHHHHHHHCCCEEEC
Confidence            45689999999998765  6899999999999998   6766 556776655432 233346788999999999999999


Q ss_pred             CCC--------CCccHHHHHHHHhcCceEEeCcccccccccccCCchHHhHhhcCeeEEEec
Q 002846          680 PTG--------SNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFSFS  733 (874)
Q Consensus       680 p~~--------s~DD~y~LyAa~~~~~~~vsnD~mRdH~~~ll~~~~F~rW~~~hqv~~~~~  733 (874)
                      |.+        ++||+|||++|...+++|||||+||||..+   ...+.+|.+.|+|.|+|.
T Consensus       101 Ps~~~~g~~~~~ydD~~il~~A~~~~g~IVSND~~rD~~~~---~p~~k~~Ie~rli~ytFv  159 (185)
T 3v32_B          101 PSRRVGGKRVVCYDDRFIVKLAYESDGIVVSNDTYRDLQGE---RQEWKRFIEERLLMYSFV  159 (185)
T ss_dssp             CCCC-------CCHHHHHHHHHHHTTCEEECSCCCHHHHHH---CHHHHHHHHHHEECCEEE
T ss_pred             CCcccCCCcccCccHHHHHHHHHHcCCEEEeCccHHHHHhh---CHHHHHHHHhCcceeEEE
Confidence            999        899999999999999999999999999862   345777789999999986

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.77  E-value=2.1e-19  Score=217.25  Aligned_cols=116  Identities=15%  Similarity=0.008  Sum_probs=110.4

Q ss_pred             chHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 002846          356 EIRLSEDAKKYAFQRGFEIYEKMCL---DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF  432 (874)
Q Consensus       356 n~lI~~~~k~g~~~~A~~lf~~M~~---~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~  432 (874)
                      |+||++||+.|++++|.++|++|.+   .|+.||++|||+||++||+.|++++|.++|++|.+.|+.||++|||+||.+|
T Consensus       131 naLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~gl  210 (1134)
T 3spa_A          131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCM  210 (1134)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence            9999999999999999999988874   5899999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCh-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 002846          433 CNNGDV-DKACSVEEHMLEHGVYPEEPELEALLRVSVEAG  471 (874)
Q Consensus       433 ~k~G~~-~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G  471 (874)
                      |+.|+. ++|.++|++|.+.|+.||..+|+++|.++.+.+
T Consensus       211 cK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~  250 (1134)
T 3spa_A          211 GRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT  250 (1134)
T ss_dssp             HHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH
T ss_pred             HhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH
Confidence            999985 789999999999999999999999998777654

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.76  E-value=1.1e-19  Score=219.65  Aligned_cols=150  Identities=9%  Similarity=-0.096  Sum_probs=130.9

Q ss_pred             hhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHH---cCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCc
Q 002846          278 NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKEN---LGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDA  354 (874)
Q Consensus       278 ~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~---~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~  354 (874)
                      .+|||+||+|      ||+.|++++|.++|.+|.+   +|+.||++||                                
T Consensus       127 ~~TynaLIdg------lcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTY--------------------------------  168 (1134)
T 3spa_A          127 QQRLLAFFKC------CLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMY--------------------------------  168 (1134)
T ss_dssp             HHHHHHHHHH------HHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHH--------------------------------
T ss_pred             HHHHHHHHHH------HHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHH--------------------------------
Confidence            4789999999      9999999999999988864   5899999999                                


Q ss_pred             cchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 002846          355 DEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDG-DMAFDMVKRMKSLGINPRLRSYGPALSVFC  433 (874)
Q Consensus       355 ~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~-d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~  433 (874)
                       |+||+|||+.|++++|.++|++|.+.|+.||++|||+||+++|+.|+. ++|.++|++|.+.|+.||.++|+++|.++.
T Consensus       169 -NtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~e  247 (1134)
T 3spa_A          169 -NAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED  247 (1134)
T ss_dssp             -HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHH
T ss_pred             -HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhh
Confidence             999999999999999999999999999999999999999999999985 789999999999999999999999998887


Q ss_pred             hCCChhHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHhcC
Q 002846          434 NNGDVDKACSVEEHMLEHGVYPE------EPELEALLRVSVEAG  471 (874)
Q Consensus       434 k~G~~~~A~~l~~eM~~~Gv~Pd------~~ty~~LI~~~~~~G  471 (874)
                      +.+-++.+.    .+ ..++.|+      ..|...|.+.|.+.+
T Consensus       248 R~~vL~~Vr----kv-~P~f~p~~~~~~~~~t~~LL~dl~s~d~  286 (1134)
T 3spa_A          248 RATVLKAVH----KV-KPTFSLPPQLPPPVNTSKLLRDVYAKDG  286 (1134)
T ss_dssp             HHHHHHHHG----GG-CCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred             HHHHHHHHH----Hh-CcccCCCCCCcccccchHHHHHHHccCC
Confidence            765443333    33 3456665      566677888887766

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.55  E-value=1.4e-12  Score=144.59  Aligned_cols=279  Identities=11%  Similarity=-0.031  Sum_probs=207.7

Q ss_pred             HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHH
Q 002846          159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYH-YNVLLYLCS  237 (874)
Q Consensus       159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~t-yn~LL~a~~  237 (874)
                      ...+.++.++|...|+.+....       +.+...|..+..++.+.|++++|+..|+++.+.  .|+... +..+-..+.
T Consensus        76 ~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~  146 (388)
T 1w3b_A           76 VYKERGQLQEAIEHYRHALRLK-------PDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLK  146 (388)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHcC-------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHH
Confidence            4556778888888888875421       113356788888888888888888888888764  354443 344444444


Q ss_pred             hcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCC
Q 002846          238 SAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS  317 (874)
Q Consensus       238 ~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~P  317 (874)
                                ..|+.++|...|.       ++... ...+..+|+.+...      +...|++++|...|+++....  |
T Consensus       147 ----------~~g~~~~A~~~~~-------~al~~-~p~~~~~~~~l~~~------~~~~g~~~~A~~~~~~al~~~--p  200 (388)
T 1w3b_A          147 ----------ALGRLEEAKACYL-------KAIET-QPNFAVAWSNLGCV------FNAQGEIWLAIHHFEKAVTLD--P  200 (388)
T ss_dssp             ----------TTSCHHHHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHTTTCHHHHHHHHHHHHHHC--T
T ss_pred             ----------HccCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHcCCHHHHHHHHHHHHhcC--C
Confidence                      6788888888884       44443 22356678888888      888999999999999888753  4


Q ss_pred             Cee-eec--------cccHHHHHHhhhcC---CCC-cccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 002846          318 NGH-MKL--------NSQLLDGRSNLERG---PDD-QSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVP  384 (874)
Q Consensus       318 d~~-ty~--------~g~~~eA~~l~~~m---~pd-~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~  384 (874)
                      +.. .|.        .|+.++|...+.+.   .|+ ..+|           ..+...+.+.|++++|.+.|+++.... +
T Consensus       201 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-----------~~l~~~~~~~g~~~~A~~~~~~al~~~-p  268 (388)
T 1w3b_A          201 NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH-----------GNLACVYYEQGLIDLAIDTYRRAIELQ-P  268 (388)
T ss_dssp             TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH-----------HHHHHHHHHTTCHHHHHHHHHHHHHTC-S
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHH-----------HHHHHHHHHcCCHHHHHHHHHHHHhhC-C
Confidence            432 222        67778888887766   454 4556           778888889999999999999888764 2


Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 002846          385 MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL  464 (874)
Q Consensus       385 Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI  464 (874)
                      .+..+|..+...+.+.|++++|..+|+++.+. .+.+..+|+.+...+.+.|++++|..+++.+.+.. ..+...|..|.
T Consensus       269 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~  346 (388)
T 1w3b_A          269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLA  346 (388)
T ss_dssp             SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence            35678888999999999999999999988876 34567788888888999999999999998887642 33577888888


Q ss_pred             HHHHhcCCchHHHHHHHHHHhc
Q 002846          465 RVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       465 ~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      ..|.+.|++++|...|+++.+.
T Consensus       347 ~~~~~~g~~~~A~~~~~~a~~~  368 (388)
T 1w3b_A          347 SVLQQQGKLQEALMHYKEAIRI  368 (388)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHHHHHhh
Confidence            8999999999999999888865

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.53  E-value=1.3e-11  Score=136.88  Aligned_cols=296  Identities=10%  Similarity=-0.050  Sum_probs=234.0

Q ss_pred             HHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 002846          160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA  239 (874)
Q Consensus       160 ~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~  239 (874)
                      ..+.++.++|.+.++.+....       +.+...+..+-..+.+.|++++|..+++...+.. +.+..+|..+-.++.  
T Consensus         9 ~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~--   78 (388)
T 1w3b_A            9 EYQAGDFEAAERHCMQLWRQE-------PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYK--   78 (388)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH--
T ss_pred             HHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHH--
Confidence            446789999999999985431       1233566666778889999999999999888643 567889999999999  


Q ss_pred             ccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCe
Q 002846          240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG  319 (874)
Q Consensus       240 ~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~  319 (874)
                              +.|++++|...|.       ++... .-.+...|..+..+      +.+.|++++|...|.++...  .|+.
T Consensus        79 --------~~g~~~~A~~~~~-------~al~~-~p~~~~~~~~l~~~------~~~~g~~~~A~~~~~~al~~--~p~~  134 (388)
T 1w3b_A           79 --------ERGQLQEAIEHYR-------HALRL-KPDFIDGYINLAAA------LVAAGDMEGAVQAYVSALQY--NPDL  134 (388)
T ss_dssp             --------HHTCHHHHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHHHSCSSHHHHHHHHHHHH--CTTC
T ss_pred             --------HCCCHHHHHHHHH-------HHHHc-CcchHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHh--CCCc
Confidence                    7899999999995       44432 22245569999999      99999999999999999876  4666


Q ss_pred             eeec---------cccHHHHHHhhhcC---CCC-cccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 002846          320 HMKL---------NSQLLDGRSNLERG---PDD-QSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN  386 (874)
Q Consensus       320 ~ty~---------~g~~~eA~~l~~~m---~pd-~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd  386 (874)
                      ....         .|+.++|...|.++   .|+ ..+|           +.+...+.+.|++++|.+.|+++.... +-+
T Consensus       135 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-----------~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~  202 (388)
T 1w3b_A          135 YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAW-----------SNLGCVFNAQGEIWLAIHHFEKAVTLD-PNF  202 (388)
T ss_dssp             THHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHH-----------HHHHHHHHTTTCHHHHHHHHHHHHHHC-TTC
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH-----------HHHHHHHHHcCCHHHHHHHHHHHHhcC-CCc
Confidence            5433         68999999999887   554 4566           788888999999999999999998754 335


Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 002846          387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALL  464 (874)
Q Consensus       387 ~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~P-d~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~P-d~~ty~~LI  464 (874)
                      ...|..+-..+...|++++|...+++....  .| +..+|..+...|++.|++++|.+.|+.+.+..  | +...|..+.
T Consensus       203 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~  278 (388)
T 1w3b_A          203 LDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLA  278 (388)
T ss_dssp             HHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHH
Confidence            778899999999999999999999988765  35 46788889999999999999999999998854  4 467889999


Q ss_pred             HHHHhcCCchHHHHHHHHHHhcCCCCC-hhHHHH-HHHHHhcchH
Q 002846          465 RVSVEAGKGDRVYYLLHKLRTSVRKVS-PSTADV-IAKWFNSKEA  507 (874)
Q Consensus       465 ~~~~~~G~~d~A~~ll~~M~~~~~~~s-p~T~~~-I~~~~~s~~~  507 (874)
                      ..+.+.|++++|..+|+++...  .|. +.++.. ...++..+..
T Consensus       279 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~  321 (388)
T 1w3b_A          279 NALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNI  321 (388)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCH
Confidence            9999999999999999999876  332 335544 3444444443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.48  E-value=1.4e-11  Score=138.72  Aligned_cols=285  Identities=10%  Similarity=-0.045  Sum_probs=222.9

Q ss_pred             HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 002846          159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS  238 (874)
Q Consensus       159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~  238 (874)
                      ...+.++.++|..+|+.+...       .+.+...|..+...|.+.|++++|+..|+++.+.+ +.+...|..+..+|. 
T Consensus        35 ~~~~~g~~~~A~~~~~~~l~~-------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~-  105 (450)
T 2y4t_A           35 KLLAAGQLADALSQFHAAVDG-------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLL-  105 (450)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred             HHHHCCCHHHHHHHHHHHHHh-------CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH-
Confidence            566889999999999999653       12356899999999999999999999999999764 335778888888888 


Q ss_pred             cccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCch---hhhHhhhcC------cccChhhhhcCChHHHHHHHHH
Q 002846          239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNN---GQLDYGSSP------MIDKLESNSSYRFDDLDSTFNE  309 (874)
Q Consensus       239 ~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~---vtyn~LI~~------~~~~~~~~~~g~~e~A~~lf~e  309 (874)
                               +.|++++|...|.       ++... ...+.   ..|..++..      ......+.+.|++++|..+|++
T Consensus       106 ---------~~g~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~  168 (450)
T 2y4t_A          106 ---------KQGKLDEAEDDFK-------KVLKS-NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDK  168 (450)
T ss_dssp             ---------HTTCHHHHHHHHH-------HHHTS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             ---------HcCCHHHHHHHHH-------HHHhc-CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                     8899999999995       44442 22233   445444221      0001127789999999999999


Q ss_pred             HHHcCCCCC-eeeec--------cccHHHHHHhhhcC----CCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHH
Q 002846          310 KENLGQFSN-GHMKL--------NSQLLDGRSNLERG----PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYE  376 (874)
Q Consensus       310 M~~~Gi~Pd-~~ty~--------~g~~~eA~~l~~~m----~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~  376 (874)
                      +....  |+ ...+.        .|+.++|...|.++    ..+..+|           ..+...|.+.|++++|.++|+
T Consensus       169 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----------~~l~~~~~~~g~~~~A~~~~~  235 (450)
T 2y4t_A          169 ILEVC--VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAF-----------YKISTLYYQLGDHELSLSEVR  235 (450)
T ss_dssp             HHHHC--TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHH-----------HHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHhC--CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH-----------HHHHHHHHHcCCHHHHHHHHH
Confidence            98753  33 22232        88999999999987    4456777           888899999999999999999


Q ss_pred             HHHHCCCCCCHHHHHHH------------HHHHHhcCChhHHHHHHHHHHHCCCCCC-----cccHHHHHHHHHhCCChh
Q 002846          377 KMCLDEVPMNEASLTAV------------GRMAMSMGDGDMAFDMVKRMKSLGINPR-----LRSYGPALSVFCNNGDVD  439 (874)
Q Consensus       377 ~M~~~Gv~Pd~~tyn~L------------I~~~~~~G~~d~A~~l~~~M~~~Gi~Pd-----~~tYn~LI~a~~k~G~~~  439 (874)
                      ++.... +.+...+..+            ...|...|++++|..+|+++.+.  .|+     ...|..+...+.+.|+++
T Consensus       236 ~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~  312 (450)
T 2y4t_A          236 ECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPV  312 (450)
T ss_dssp             HHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHH
T ss_pred             HHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHH
Confidence            998643 2244445544            78899999999999999999874  455     347888889999999999


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          440 KACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       440 ~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      +|...++.+.... ..+...|..+..+|...|++++|...|++..+.
T Consensus       313 ~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  358 (450)
T 2y4t_A          313 EAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH  358 (450)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            9999999988753 236789999999999999999999999999875

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.45  E-value=1e-11  Score=139.64  Aligned_cols=276  Identities=10%  Similarity=0.038  Sum_probs=220.7

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhh
Q 002846          190 EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTEL  269 (874)
Q Consensus       190 d~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em  269 (874)
                      +...|..+...+.+.|++++|+.+|+++.+.. +.+...|..+..++.          ..|+.++|...|.       ++
T Consensus        25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~----------~~g~~~~A~~~~~-------~a   86 (450)
T 2y4t_A           25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFL----------AMGKSKAALPDLT-------KV   86 (450)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----------HTTCHHHHHHHHH-------HH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH----------HCCCHHHHHHHHH-------HH
Confidence            45789999999999999999999999998652 446888999988888          7899999999995       55


Q ss_pred             hhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCee------------------------eeccc
Q 002846          270 GDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH------------------------MKLNS  325 (874)
Q Consensus       270 ~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~------------------------ty~~g  325 (874)
                      .+. +-.+...|..+...      |.+.|++++|...|+++...  .|+..                        -+..|
T Consensus        87 l~~-~p~~~~~~~~l~~~------~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  157 (450)
T 2y4t_A           87 IQL-KMDFTAARLQRGHL------LLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSG  157 (450)
T ss_dssp             HHH-CTTCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             Hhc-CCCcHHHHHHHHHH------HHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            443 33366778899999      99999999999999999875  35433                        11178


Q ss_pred             cHHHHHHhhhcC---CC-CcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 002846          326 QLLDGRSNLERG---PD-DQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG  401 (874)
Q Consensus       326 ~~~eA~~l~~~m---~p-d~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G  401 (874)
                      +..+|...|.++   .| +...+           ..+...|.+.|++++|.++|+++.... +.+..+|..+...|...|
T Consensus       158 ~~~~A~~~~~~~~~~~~~~~~~~-----------~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g  225 (450)
T 2y4t_A          158 DYTAAIAFLDKILEVCVWDAELR-----------ELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLG  225 (450)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHH-----------HHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHhCCCChHHH-----------HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence            999999999987   44 45566           888899999999999999999998753 457899999999999999


Q ss_pred             ChhHHHHHHHHHHHCCCCCCccc-HHHH------------HHHHHhCCChhHHHHHHHHHHHcCCCCC-----HHHHHHH
Q 002846          402 DGDMAFDMVKRMKSLGINPRLRS-YGPA------------LSVFCNNGDVDKACSVEEHMLEHGVYPE-----EPELEAL  463 (874)
Q Consensus       402 ~~d~A~~l~~~M~~~Gi~Pd~~t-Yn~L------------I~a~~k~G~~~~A~~l~~eM~~~Gv~Pd-----~~ty~~L  463 (874)
                      ++++|..+|+++...  .|+... +..+            ...|.+.|++++|..+|+.+.+.  .|+     ...|..+
T Consensus       226 ~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l  301 (450)
T 2y4t_A          226 DHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERI  301 (450)
T ss_dssp             CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHH
Confidence            999999999999865  455443 3333            68889999999999999999884  365     4578889


Q ss_pred             HHHHHhcCCchHHHHHHHHHHhcCCCC-ChhHHHH-HHHHHhcchHHHh
Q 002846          464 LRVSVEAGKGDRVYYLLHKLRTSVRKV-SPSTADV-IAKWFNSKEAARL  510 (874)
Q Consensus       464 I~~~~~~G~~d~A~~ll~~M~~~~~~~-sp~T~~~-I~~~~~s~~~~~a  510 (874)
                      ...+.+.|++++|..+++++...  .+ .+..+.. ...+...+...+|
T Consensus       302 ~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A  348 (450)
T 2y4t_A          302 CHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEA  348 (450)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHH
Confidence            99999999999999999998876  33 3345544 4444445544333

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.22  E-value=1.9e-09  Score=122.71  Aligned_cols=285  Identities=10%  Similarity=0.004  Sum_probs=214.1

Q ss_pred             HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 002846          159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS  238 (874)
Q Consensus       159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~  238 (874)
                      ...+.++..+|...|+++....        |+...|..+..+|.+.|++++|+..|+++.+.+ +-+...|..+..++. 
T Consensus        15 ~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~-   84 (514)
T 2gw1_A           15 QFFRNKKYDDAIKYYNWALELK--------EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE-   84 (514)
T ss_dssp             HHHHTSCHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH-
T ss_pred             HHHHhccHHHHHHHHHHHHhcC--------ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH-
Confidence            4557789999999999996642        567899999999999999999999999999764 345678888888888 


Q ss_pred             cccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCc-----------------------------------------
Q 002846          239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDN-----------------------------------------  277 (874)
Q Consensus       239 ~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d-----------------------------------------  277 (874)
                               +.|+.++|...|.       .+.......+                                         
T Consensus        85 ---------~~g~~~~A~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  148 (514)
T 2gw1_A           85 ---------GLGKFADAMFDLS-------VLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPA  148 (514)
T ss_dssp             ---------HTTCHHHHHHHHH-------HHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-------------------
T ss_pred             ---------HHhhHHHHHHHHH-------HHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChh
Confidence                     7899999999985       2222111000                                         


Q ss_pred             -------------------------------------hhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHH-----cCC
Q 002846          278 -------------------------------------NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKEN-----LGQ  315 (874)
Q Consensus       278 -------------------------------------~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~-----~Gi  315 (874)
                                                           ...+-.+...   ...+.+.|++++|..+|+++..     ..-
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  225 (514)
T 2gw1_A          149 KERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLS---NLYKRSPESYDKADESFTKAARLFEEQLDK  225 (514)
T ss_dssp             --------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHH---HHSSCCTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             hHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHH---HHHhhhhccHHHHHHHHHHHHHHhhhhhcc
Confidence                                                 0001000000   0001147899999999999988     433


Q ss_pred             CCCee--------eec--------cccHHHHHHhhhcC---CCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHH
Q 002846          316 FSNGH--------MKL--------NSQLLDGRSNLERG---PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYE  376 (874)
Q Consensus       316 ~Pd~~--------ty~--------~g~~~eA~~l~~~m---~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~  376 (874)
                      .|+..        .+.        .|+..+|...|.+.   .|+...|           ..+...+...|++++|.+.|+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~-----------~~l~~~~~~~~~~~~A~~~~~  294 (514)
T 2gw1_A          226 NNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSY-----------IYMALIMADRNDSTEYYNYFD  294 (514)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHH-----------HHHHHHHHTSSCCTTGGGHHH
T ss_pred             CccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHH-----------HHHHHHHHHCCCHHHHHHHHH
Confidence            44432        111        78899999998887   5665555           777788889999999999999


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 002846          377 KMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE  456 (874)
Q Consensus       377 ~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd  456 (874)
                      ++.... +.+..+|..+...+...|++++|...+++..+.. ..+...|..+...|...|+.++|..+++.+.+.. ..+
T Consensus       295 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~  371 (514)
T 2gw1_A          295 KALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEA  371 (514)
T ss_dssp             HHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTC
T ss_pred             HHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccC
Confidence            988754 3466788899999999999999999999988763 2356678888888889999999999999987753 225


Q ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          457 EPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       457 ~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      ...|..+...+.+.|++++|..+|.++...
T Consensus       372 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  401 (514)
T 2gw1_A          372 PEVPNFFAEILTDKNDFDKALKQYDLAIEL  401 (514)
T ss_dssp             SHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            677888888899999999999999888764

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.17  E-value=1.1e-08  Score=109.16  Aligned_cols=260  Identities=9%  Similarity=-0.067  Sum_probs=205.1

Q ss_pred             HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 002846          159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS  238 (874)
Q Consensus       159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~  238 (874)
                      .....++..+|.++|+.+.....       .+...+..++..+.+.|++++|+.+|+++.+.. +-+...|..+-..+. 
T Consensus        31 ~~~~~g~~~~A~~~~~~~l~~~p-------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~-  101 (330)
T 3hym_B           31 RHYYNCDFKMCYKLTSVVMEKDP-------FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYL-  101 (330)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCT-------TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHH-
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCC-------CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHH-
Confidence            44566999999999999865421       122466677788899999999999999998753 234567777777777 


Q ss_pred             cccCCCcccCCC-CHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCC
Q 002846          239 AAVGVVKPAKSG-SGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS  317 (874)
Q Consensus       239 ~~~~~~~~~k~G-~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~P  317 (874)
                               ..| +.++|...|.       ..... .-.+...|..+...      +...|++++|...|.+.....  |
T Consensus       102 ---------~~~~~~~~A~~~~~-------~a~~~-~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~a~~~~--~  156 (330)
T 3hym_B          102 ---------MVGHKNEHARRYLS-------KATTL-EKTYGPAWIAYGHS------FAVESEHDQAMAAYFTAAQLM--K  156 (330)
T ss_dssp             ---------HSCSCHHHHHHHHH-------HHHTT-CTTCTHHHHHHHHH------HHHHTCHHHHHHHHHHHHHHT--T
T ss_pred             ---------HhhhhHHHHHHHHH-------HHHHh-CCccHHHHHHHHHH------HHHccCHHHHHHHHHHHHHhc--c
Confidence                     667 8999999995       33332 22255668888888      999999999999999988763  2


Q ss_pred             CeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002846          318 NGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMA  397 (874)
Q Consensus       318 d~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~  397 (874)
                      +.                     ...+           ..+...+...|++++|.+.|++..... +.+..++..+...+
T Consensus       157 ~~---------------------~~~~-----------~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~  203 (330)
T 3hym_B          157 GC---------------------HLPM-----------LYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVA  203 (330)
T ss_dssp             TC---------------------SHHH-----------HHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHH
T ss_pred             cc---------------------HHHH-----------HHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence            21                     1112           556778889999999999999998764 45678999999999


Q ss_pred             HhcCChhHHHHHHHHHHHCC--------CCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 002846          398 MSMGDGDMAFDMVKRMKSLG--------INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE  469 (874)
Q Consensus       398 ~~~G~~d~A~~l~~~M~~~G--------i~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~  469 (874)
                      ...|++++|...+++.....        .......|..+-..|.+.|+.++|...|+...+.. ..+...|..+-..+.+
T Consensus       204 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~  282 (330)
T 3hym_B          204 FQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSL  282 (330)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHH
T ss_pred             HHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHH
Confidence            99999999999999887641        13345688889999999999999999999998754 2356788899999999


Q ss_pred             cCCchHHHHHHHHHHhc
Q 002846          470 AGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       470 ~G~~d~A~~ll~~M~~~  486 (874)
                      .|+.++|...|.+..+.
T Consensus       283 ~g~~~~A~~~~~~al~~  299 (330)
T 3hym_B          283 MGNFENAVDYFHTALGL  299 (330)
T ss_dssp             HTCHHHHHHHHHTTTTT
T ss_pred             hccHHHHHHHHHHHHcc
Confidence            99999999999998765

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.17  E-value=2.1e-09  Score=117.20  Aligned_cols=272  Identities=10%  Similarity=-0.023  Sum_probs=190.4

Q ss_pred             CChhHHHH-HHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccC
Q 002846          164 TNDSGQYK-VRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVG  242 (874)
Q Consensus       164 ~~~~~A~~-vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~  242 (874)
                      ++.++|.. .|++....  .++. ...+...|..+-..+.+.|++++|+.+|+++.+.. +.+...|..+-.++.     
T Consensus        39 ~~~~~a~~~~~~~a~~~--~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~-----  109 (368)
T 1fch_A           39 SDYDDLTSATYDKGYQF--EEEN-PLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQA-----  109 (368)
T ss_dssp             -------CHHHHCCCCC--CSSC-TTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH-----
T ss_pred             HHHHHHHhhhhhHHHhc--CCCC-cccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-----
Confidence            45556666 66654221  1211 11133567788889999999999999999999764 346778888888888     


Q ss_pred             CCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeee
Q 002846          243 VVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMK  322 (874)
Q Consensus       243 ~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty  322 (874)
                           +.|+.++|...|.       +.... .-.+...|..+...      +...|++++|...|.++....  |+....
T Consensus       110 -----~~g~~~~A~~~~~-------~al~~-~~~~~~~~~~l~~~------~~~~g~~~~A~~~~~~~~~~~--~~~~~~  168 (368)
T 1fch_A          110 -----ENEQELLAISALR-------RCLEL-KPDNQTALMALAVS------FTNESLQRQACEILRDWLRYT--PAYAHL  168 (368)
T ss_dssp             -----HTTCHHHHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHTS--TTTGGG
T ss_pred             -----HCcCHHHHHHHHH-------HHHhc-CCCCHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHhC--cCcHHH
Confidence                 7899999999995       44433 33366678888888      999999999999999998864  322211


Q ss_pred             c--cccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh
Q 002846          323 L--NSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVP-MNEASLTAVGRMAMS  399 (874)
Q Consensus       323 ~--~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~-Pd~~tyn~LI~~~~~  399 (874)
                      .  .+.....      ..+. ..            ...+..+...|++++|.++|+++...... ++..++..+...|..
T Consensus       169 ~~~~~~~~~~------~~~~-~~------------~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~  229 (368)
T 1fch_A          169 VTPAEEGAGG------AGLG-PS------------KRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL  229 (368)
T ss_dssp             CC----------------------------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhh------hccc-HH------------HHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHH
Confidence            0  0000000      0000 00            11233444888999999999998875422 157889999999999


Q ss_pred             cCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHH
Q 002846          400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL  479 (874)
Q Consensus       400 ~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~l  479 (874)
                      .|++++|...|+++.... +.+...|..+...|.+.|+.++|...|+.+.+.. ..+...|..|...|.+.|++++|...
T Consensus       230 ~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~  307 (368)
T 1fch_A          230 SGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEH  307 (368)
T ss_dssp             TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence            999999999999887752 2346788888889999999999999999987753 23577888899999999999999999


Q ss_pred             HHHHHhc
Q 002846          480 LHKLRTS  486 (874)
Q Consensus       480 l~~M~~~  486 (874)
                      |.+....
T Consensus       308 ~~~al~~  314 (368)
T 1fch_A          308 FLEALNM  314 (368)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9888764

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.16  E-value=9e-10  Score=120.65  Aligned_cols=246  Identities=9%  Similarity=-0.030  Sum_probs=184.1

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhh
Q 002846          190 EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTEL  269 (874)
Q Consensus       190 d~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em  269 (874)
                      +...|..+-..+.+.|++++|+.+|+++.+.. +.+...|..+-.++.          +.|+.++|...|.       +.
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~----------~~g~~~~A~~~~~-------~a  125 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQA----------ENENEQAAIVALQ-------RC  125 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----------HTTCHHHHHHHHH-------HH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHH----------HCCCHHHHHHHHH-------HH
Confidence            34568888899999999999999999998754 346788888888888          7899999999995       44


Q ss_pred             hhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCccccccccc
Q 002846          270 GDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSI  349 (874)
Q Consensus       270 ~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i  349 (874)
                      ... .-.+...|..+...      |...|++++|...|+++....  |+........           ......+     
T Consensus       126 l~~-~p~~~~~~~~l~~~------~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~-----------~~~~~~~-----  180 (365)
T 4eqf_A          126 LEL-QPNNLKALMALAVS------YTNTSHQQDACEALKNWIKQN--PKYKYLVKNK-----------KGSPGLT-----  180 (365)
T ss_dssp             HHH-CTTCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHC--HHHHCC---------------------------
T ss_pred             Hhc-CCCCHHHHHHHHHH------HHccccHHHHHHHHHHHHHhC--ccchHHHhhh-----------ccchHHH-----
Confidence            432 22356778999888      999999999999999998753  2211110000           0001111     


Q ss_pred             ccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHH
Q 002846          350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVP-MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA  428 (874)
Q Consensus       350 ~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~-Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~L  428 (874)
                            ..+...+.+.|++++|.++|+++....-. ++..+|..+...|...|++++|...|++..+.. +.+..+|+.+
T Consensus       181 ------~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l  253 (365)
T 4eqf_A          181 ------RRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRL  253 (365)
T ss_dssp             --------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             ------HHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence                  44567788889999999999998876422 268889999999999999999999999988762 2357788889


Q ss_pred             HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       429 I~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      ...|.+.|++++|...|+.+.+.. .-+...|..|-..|.+.|++++|...|++....
T Consensus       254 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  310 (365)
T 4eqf_A          254 GATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSL  310 (365)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            999999999999999999988753 224778888999999999999999999988764

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.16  E-value=5e-09  Score=111.53  Aligned_cols=257  Identities=9%  Similarity=-0.065  Sum_probs=193.9

Q ss_pred             HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 002846          159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS  238 (874)
Q Consensus       159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~  238 (874)
                      .....++..+|..+|+++....       +.+...|..+...+.+.|++++|+..|+++.+.. +.+...+..+-..+. 
T Consensus        30 ~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~-  100 (327)
T 3cv0_A           30 SMLKLANLAEAALAFEAVCQAA-------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT-  100 (327)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred             HHHHhccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH-
Confidence            4557889999999999986532       1245788889999999999999999999998753 346778888888887 


Q ss_pred             cccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhh--------------hc-CcccChhhhhcCChHHH
Q 002846          239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYG--------------SS-PMIDKLESNSSYRFDDL  303 (874)
Q Consensus       239 ~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~L--------------I~-~~~~~~~~~~~g~~e~A  303 (874)
                               ..|+.++|...+.       +.... .-.+...+..+              -. .      +...|++++|
T Consensus       101 ---------~~~~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~A  157 (327)
T 3cv0_A          101 ---------NEHNANAALASLR-------AWLLS-QPQYEQLGSVNLQADVDIDDLNVQSEDFF------FAAPNEYREC  157 (327)
T ss_dssp             ---------HTTCHHHHHHHHH-------HHHHT-STTTTTC--------------------CC------TTSHHHHHHH
T ss_pred             ---------HcCCHHHHHHHHH-------HHHHh-CCccHHHHHHHhHHHHHHHHHHHHHHhHH------HHHcccHHHH
Confidence                     7899999999995       33332 11122223222              11 2      5667788888


Q ss_pred             HHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 002846          304 DSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEV  383 (874)
Q Consensus       304 ~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv  383 (874)
                      ...+.++....  |+                     +...+           ..+...+.+.|++++|.++|+++.... 
T Consensus       158 ~~~~~~~~~~~--~~---------------------~~~~~-----------~~la~~~~~~~~~~~A~~~~~~~~~~~-  202 (327)
T 3cv0_A          158 RTLLHAALEMN--PN---------------------DAQLH-----------ASLGVLYNLSNNYDSAAANLRRAVELR-  202 (327)
T ss_dssp             HHHHHHHHHHS--TT---------------------CHHHH-----------HHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHhhC--CC---------------------CHHHH-----------HHHHHHHHHhccHHHHHHHHHHHHHhC-
Confidence            88888887653  21                     11122           677788889999999999999988753 


Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC--------
Q 002846          384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP--------  455 (874)
Q Consensus       384 ~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~P--------  455 (874)
                      +.+..+|..+...+...|++++|...|+++.+.. ..+...|..+...|.+.|+.++|.+.|+......-..        
T Consensus       203 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  281 (327)
T 3cv0_A          203 PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEAS  281 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----C
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccch
Confidence            3467889999999999999999999999987753 2346778888899999999999999999887653111        


Q ss_pred             ---CHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 002846          456 ---EEPELEALLRVSVEAGKGDRVYYLLHKL  483 (874)
Q Consensus       456 ---d~~ty~~LI~~~~~~G~~d~A~~ll~~M  483 (874)
                         +...|..+..++.+.|+.++|..++++.
T Consensus       282 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  312 (327)
T 3cv0_A          282 REATRSMWDFFRMLLNVMNRPDLVELTYAQN  312 (327)
T ss_dssp             CTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred             hhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence               3678889999999999999999887643

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.16  E-value=2.6e-11  Score=137.30  Aligned_cols=225  Identities=13%  Similarity=0.096  Sum_probs=92.4

Q ss_pred             HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 002846          159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS  238 (874)
Q Consensus       159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~  238 (874)
                      .+.+.++.++|.+.++.+.          .|  .+|..|..++.+.|++.+|++.|.+.      +|..+|..++.+|. 
T Consensus        12 ll~~~~~ld~A~~fae~~~----------~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae-   72 (449)
T 1b89_A           12 LIEHIGNLDRAYEFAERCN----------EP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAAN-   72 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHccCHHHHHHHHHhCC----------Ch--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHH-
Confidence            3446778899999999981          12  49999999999999999999999763      67889999999998 


Q ss_pred             cccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCC
Q 002846          239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN  318 (874)
Q Consensus       239 ~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd  318 (874)
                               ..|++++|...+.        |..+ ..++..+.+.|+.+      |.+.|+++++.++++       .|+
T Consensus        73 ---------~~g~~EeAi~yl~--------~ark-~~~~~~i~~~Li~~------Y~Klg~l~e~e~f~~-------~pn  121 (449)
T 1b89_A           73 ---------TSGNWEELVKYLQ--------MARK-KARESYVETELIFA------LAKTNRLAELEEFIN-------GPN  121 (449)
T ss_dssp             ------------------------------------------------------------CHHHHTTTTT-------CC-
T ss_pred             ---------hCCCHHHHHHHHH--------HHHH-hCccchhHHHHHHH------HHHhCCHHHHHHHHc-------CCc
Confidence                     7899999999773        4443 34466789999999      999999999988875       255


Q ss_pred             eeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002846          319 GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAM  398 (874)
Q Consensus       319 ~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~  398 (874)
                      ..+|                                 +.+-+.|...|.+++|..+|..+         ..|..|+.++.
T Consensus       122 ~~a~---------------------------------~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~  159 (449)
T 1b89_A          122 NAHI---------------------------------QQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLV  159 (449)
T ss_dssp             ------------------------------------------------CTTTHHHHHHHT---------TCHHHHHHHHH
T ss_pred             HHHH---------------------------------HHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHH
Confidence            5555                                 88889999999999999999977         37999999999


Q ss_pred             hcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHH
Q 002846          399 SMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYY  478 (874)
Q Consensus       399 ~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~  478 (874)
                      +.|++++|.+.+.++      -+..+|..++.+|+..|+++.|......     +..+......|+..|.+.|++++|..
T Consensus       160 ~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~  228 (449)
T 1b89_A          160 HLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELIT  228 (449)
T ss_dssp             TTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHH
Confidence            999999999999887      3788999999999999999999655543     33444556678999999999999999


Q ss_pred             HHHHHHhc
Q 002846          479 LLHKLRTS  486 (874)
Q Consensus       479 ll~~M~~~  486 (874)
                      +|+.-...
T Consensus       229 lLe~aL~l  236 (449)
T 1b89_A          229 MLEAALGL  236 (449)
T ss_dssp             HHHHHTTS
T ss_pred             HHHHHhCC
Confidence            99887644

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.13  E-value=2.9e-08  Score=106.72  Aligned_cols=279  Identities=8%  Similarity=-0.072  Sum_probs=203.1

Q ss_pred             HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 002846          159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS  238 (874)
Q Consensus       159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~  238 (874)
                      .....++..+|...|+.+....       +.+...|..+-..+...|++++|+..|+++.+.. +-+...|..+-.++. 
T Consensus        12 ~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~-   82 (359)
T 3ieg_A           12 KLLAAGQLADALSQFHAAVDGD-------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLL-   82 (359)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred             HHHHcCCHHHHHHHHHHHHhhC-------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHH-
Confidence            4557789999999999986532       1245788899999999999999999999998753 235677877878887 


Q ss_pred             cccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCC---CchhhhHhh------------hcCcccChhhhhcCChHHH
Q 002846          239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDM---DNNGQLDYG------------SSPMIDKLESNSSYRFDDL  303 (874)
Q Consensus       239 ~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi---~d~vtyn~L------------I~~~~~~~~~~~~g~~e~A  303 (874)
                               ..|+.++|...|.       +.... .-   .+...+..+            ...      +...|++++|
T Consensus        83 ---------~~~~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~------~~~~~~~~~A  139 (359)
T 3ieg_A           83 ---------KQGKLDEAEDDFK-------KVLKS-NPSEQEEKEAESQLVKADEMQRLRSQALD------AFDGADYTAA  139 (359)
T ss_dssp             ---------HHTCHHHHHHHHH-------HHHTS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHTTCHHHH
T ss_pred             ---------HcCChHHHHHHHH-------HHHhc-CCcccChHHHHHHHHHHHHHHHHHHHHHH------HHHccCHHHH
Confidence                     7799999999995       33332 22   122233333            345      7889999999


Q ss_pred             HHHHHHHHHcCCCCCe-eeec--------cccHHHHHHhhhcC---CC-CcccccccccccCCccchHHHHHHhcCCHHH
Q 002846          304 DSTFNEKENLGQFSNG-HMKL--------NSQLLDGRSNLERG---PD-DQSRKKDWSIDNQDADEIRLSEDAKKYAFQR  370 (874)
Q Consensus       304 ~~lf~eM~~~Gi~Pd~-~ty~--------~g~~~eA~~l~~~m---~p-d~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~  370 (874)
                      ..+|+++....  |+. ..+.        .|+.++|...+.+.   .| +...|           ..+...+...|++++
T Consensus       140 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-----------~~la~~~~~~~~~~~  206 (359)
T 3ieg_A          140 ITFLDKILEVC--VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAF-----------YKISTLYYQLGDHEL  206 (359)
T ss_dssp             HHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHH-----------HHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHhC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH-----------HHHHHHHHHcCCHHH
Confidence            99999998763  332 2222        78888888888876   33 34455           667778888889999


Q ss_pred             HHHHHHHHHHCCCCCCHHHHH------------HHHHHHHhcCChhHHHHHHHHHHHCCCCCCcc-----cHHHHHHHHH
Q 002846          371 GFEIYEKMCLDEVPMNEASLT------------AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR-----SYGPALSVFC  433 (874)
Q Consensus       371 A~~lf~~M~~~Gv~Pd~~tyn------------~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~-----tYn~LI~a~~  433 (874)
                      |.+.|+...... +.+..++.            .+...+.+.|++++|...+++..+..  |+..     .|..+-..|.
T Consensus       207 A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~  283 (359)
T 3ieg_A          207 SLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFS  283 (359)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHH
Confidence            999888887643 22333333            23566888899999999988887653  4432     2344567788


Q ss_pred             hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       434 k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      +.|+.++|...++...+.. ..+...|..+-..+...|++++|...|.+..+.
T Consensus       284 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~  335 (359)
T 3ieg_A          284 KDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH  335 (359)
T ss_dssp             HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            8899999999998887753 236778888888888899999999999888876

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.07  E-value=6.2e-09  Score=112.21  Aligned_cols=243  Identities=13%  Similarity=0.022  Sum_probs=148.5

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCC
Q 002846          199 DMCSKRGDVMGAIRLYDKAQREGIKLGQ--YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD  276 (874)
Q Consensus       199 ~a~~k~G~~~~Al~lf~~M~~~Gi~pd~--~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~  276 (874)
                      ....-.|++..|+..++...  ...|+.  ...-.+..+|.          ..|+.+.|...+.       ..    .-+
T Consensus         7 ~~~~~~g~y~~ai~~~~~~~--~~~p~~~~e~~~~l~r~yi----------~~g~~~~al~~~~-------~~----~~~   63 (291)
T 3mkr_A            7 KNAFYIGSYQQCINEAQRVK--PSSPERDVERDVFLYRAYL----------AQRKYGVVLDEIK-------PS----SAP   63 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHSC--CCSHHHHHHHHHHHHHHHH----------HTTCHHHHHHHSC-------TT----SCH
T ss_pred             HHHHHHHHHHHHHHHHHhcc--cCCchhhHHHHHHHHHHHH----------HCCCHHHHHHHhc-------cc----CCh
Confidence            34445677777777665542  222332  23334445555          5566777766653       10    111


Q ss_pred             chhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeec---------cccHHHHHHhhhcCCCCccccccc
Q 002846          277 NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL---------NSQLLDGRSNLERGPDDQSRKKDW  347 (874)
Q Consensus       277 d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~---------~g~~~eA~~l~~~m~pd~~ty~~w  347 (874)
                      +..++..+...      ++..++.++|.+.+++|...++.|+...+.         .|+.++|...+++ ..+...+   
T Consensus        64 ~~~a~~~la~~------~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-~~~~~~~---  133 (291)
T 3mkr_A           64 ELQAVRMFAEY------LASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-GDSLECM---  133 (291)
T ss_dssp             HHHHHHHHHHH------HHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-CCSHHHH---
T ss_pred             hHHHHHHHHHH------HcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-CCCHHHH---
Confidence            34456666666      777777777777777777766666554432         4555555555555 2233333   


Q ss_pred             ccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCccc
Q 002846          348 SIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASL---TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS  424 (874)
Q Consensus       348 ~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~ty---n~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~t  424 (874)
                              ..+...+.+.|++++|.+.|+.+....  |+...+   .+++..+...|++++|..+|+++.+. .+.+...
T Consensus       134 --------~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~  202 (291)
T 3mkr_A          134 --------AMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLL  202 (291)
T ss_dssp             --------HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHH
T ss_pred             --------HHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHH
Confidence                    666677777888888888888777653  443211   22334444557788888888877766 3445667


Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHhc
Q 002846          425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDR-VYYLLHKLRTS  486 (874)
Q Consensus       425 Yn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~-A~~ll~~M~~~  486 (874)
                      |+.+-.++.+.|++++|.+.|++..+.. .-+..++..++..+...|+.++ +.++++++.+.
T Consensus       203 ~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~  264 (291)
T 3mkr_A          203 LNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA  264 (291)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            7777777778888888888887776643 2256677777777777777765 56777777655

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.05  E-value=1.3e-08  Score=115.87  Aligned_cols=268  Identities=9%  Similarity=-0.003  Sum_probs=209.1

Q ss_pred             hcCChhHHHHHHHHHhh-----CCCCCCCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 002846          162 QRTNDSGQYKVRGITDE-----KGSKKSKK--DRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLY  234 (874)
Q Consensus       162 k~~~~~~A~~vf~eM~~-----~g~k~~~g--~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~  234 (874)
                      +.++.++|..+|+++..     ....++.+  .+.+...|..+...+.+.|++++|+.+|+++.+..  |+...|..+..
T Consensus       201 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~  278 (514)
T 2gw1_A          201 SPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMAL  278 (514)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred             hhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHH
Confidence            37889999999999866     32122210  02234678888899999999999999999998765  44778888888


Q ss_pred             HHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcC
Q 002846          235 LCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG  314 (874)
Q Consensus       235 a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~G  314 (874)
                      ++.          ..|+.++|...+.       +.... ...+...|..+...      +...|++++|...|++.....
T Consensus       279 ~~~----------~~~~~~~A~~~~~-------~~~~~-~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~~~~~~  334 (514)
T 2gw1_A          279 IMA----------DRNDSTEYYNYFD-------KALKL-DSNNSSVYYHRGQM------NFILQNYDQAGKDFDKAKELD  334 (514)
T ss_dssp             HHH----------TSSCCTTGGGHHH-------HHHTT-CTTCTHHHHHHHHH------HHHTTCTTHHHHHHHHHHHTC
T ss_pred             HHH----------HCCCHHHHHHHHH-------HHhhc-CcCCHHHHHHHHHH------HHHhCCHHHHHHHHHHHHHhC
Confidence            888          7889999999985       33332 22255678888888      999999999999999988753


Q ss_pred             CCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 002846          315 QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVG  394 (874)
Q Consensus       315 i~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI  394 (874)
                        |+.                     ...+           ..+...+.+.|++++|..+|+++.... +.+..+|..+.
T Consensus       335 --~~~---------------------~~~~-----------~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la  379 (514)
T 2gw1_A          335 --PEN---------------------IFPY-----------IQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFA  379 (514)
T ss_dssp             --SSC---------------------SHHH-----------HHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHH
T ss_pred             --hhh---------------------HHHH-----------HHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHH
Confidence              221                     1122           667778889999999999999988753 33567899999


Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCC-CCC----cccHHHHHHHHHh---CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002846          395 RMAMSMGDGDMAFDMVKRMKSLGI-NPR----LRSYGPALSVFCN---NGDVDKACSVEEHMLEHGVYPEEPELEALLRV  466 (874)
Q Consensus       395 ~~~~~~G~~d~A~~l~~~M~~~Gi-~Pd----~~tYn~LI~a~~k---~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~  466 (874)
                      ..+...|++++|...++++....- .|+    ...|..+...|..   .|++++|...|+.+.... ..+...|..+...
T Consensus       380 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~  458 (514)
T 2gw1_A          380 EILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQM  458 (514)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence            999999999999999999876421 122    2378889999999   999999999999998754 2367788899999


Q ss_pred             HHhcCCchHHHHHHHHHHhcCCCCChh
Q 002846          467 SVEAGKGDRVYYLLHKLRTSVRKVSPS  493 (874)
Q Consensus       467 ~~~~G~~d~A~~ll~~M~~~~~~~sp~  493 (874)
                      |.+.|+.++|...|++....  .+...
T Consensus       459 ~~~~g~~~~A~~~~~~a~~~--~~~~~  483 (514)
T 2gw1_A          459 KLQQEDIDEAITLFEESADL--ARTME  483 (514)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--CSSHH
T ss_pred             HHHhcCHHHHHHHHHHHHHh--ccccH
Confidence            99999999999999999887  55443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.04  E-value=5.5e-08  Score=104.52  Aligned_cols=275  Identities=10%  Similarity=0.043  Sum_probs=206.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhh
Q 002846          191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG  270 (874)
Q Consensus       191 ~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~  270 (874)
                      +..|..+-..+.+.|++++|+.+|+++.+.. +.+...+..+-.++.          ..|+.++|...|.       +..
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~----------~~~~~~~A~~~~~-------~~~   64 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFL----------AMGKSKAALPDLT-------KVI   64 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----------HHTCHHHHHHHHH-------HHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHH----------HccCHHHHHHHHH-------HHH
Confidence            4567788889999999999999999998753 335677777777777          7799999999995       444


Q ss_pred             hcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCC---Ce--------------------eee-cccc
Q 002846          271 DSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS---NG--------------------HMK-LNSQ  326 (874)
Q Consensus       271 ~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~P---d~--------------------~ty-~~g~  326 (874)
                      .. .-.+...|..+-..      +...|++++|...|.+....  .|   +.                    ..| ..|+
T Consensus        65 ~~-~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  135 (359)
T 3ieg_A           65 AL-KMDFTAARLQRGHL------LLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGAD  135 (359)
T ss_dssp             HH-CTTCHHHHHHHHHH------HHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             Hh-CCCcchHHHHHHHH------HHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            32 22255668888888      99999999999999999876  34   21                    111 1788


Q ss_pred             HHHHHHhhhcC---CC-CcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 002846          327 LLDGRSNLERG---PD-DQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD  402 (874)
Q Consensus       327 ~~eA~~l~~~m---~p-d~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~  402 (874)
                      ..+|...++++   .| +...+           ..+-..+.+.|++++|.+.|+++.... +.+..++..+...+...|+
T Consensus       136 ~~~A~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~  203 (359)
T 3ieg_A          136 YTAAITFLDKILEVCVWDAELR-----------ELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGD  203 (359)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHH-----------HHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhCCCchHHH-----------HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence            99999999887   44 44455           677788899999999999999998764 4578899999999999999


Q ss_pred             hhHHHHHHHHHHHCCCCCCcc-cHH------------HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH-----HHHHHH
Q 002846          403 GDMAFDMVKRMKSLGINPRLR-SYG------------PALSVFCNNGDVDKACSVEEHMLEHGVYPEEP-----ELEALL  464 (874)
Q Consensus       403 ~d~A~~l~~~M~~~Gi~Pd~~-tYn------------~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~-----ty~~LI  464 (874)
                      +++|...|++..+.  .|+.. .+.            .+...+.+.|+.++|...++.+.+..  |+..     .|..+-
T Consensus       204 ~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la  279 (359)
T 3ieg_A          204 HELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERIC  279 (359)
T ss_dssp             HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHH
Confidence            99999999998865  34432 222            22556889999999999999988754  4432     244566


Q ss_pred             HHHHhcCCchHHHHHHHHHHhcCCCC-ChhHHHH-HHHHHhcchHHHh
Q 002846          465 RVSVEAGKGDRVYYLLHKLRTSVRKV-SPSTADV-IAKWFNSKEAARL  510 (874)
Q Consensus       465 ~~~~~~G~~d~A~~ll~~M~~~~~~~-sp~T~~~-I~~~~~s~~~~~a  510 (874)
                      ..+...|++++|..++++....  .| .+.++.. -..+...+...+|
T Consensus       280 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A  325 (359)
T 3ieg_A          280 HCFSKDEKPVEAIRICSEVLQM--EPDNVNALKDRAEAYLIEEMYDEA  325 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHH
Confidence            7889999999999999999886  44 3334433 4444444444333

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.04  E-value=2.8e-08  Score=105.90  Aligned_cols=234  Identities=11%  Similarity=-0.108  Sum_probs=185.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhh
Q 002846          192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD  271 (874)
Q Consensus       192 ~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~  271 (874)
                      ..+..+...+...|++++|+.+|+++.+.. +.+...+..+..++.          ..|+.++|...+.       ++..
T Consensus        23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~----------~~~~~~~A~~~~~-------~~~~   84 (330)
T 3hym_B           23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLV----------ELNKANELFYLSH-------KLVD   84 (330)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHH----------HHTCHHHHHHHHH-------HHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHH----------HhhhHHHHHHHHH-------HHHH
Confidence            567778888899999999999999998653 223445555666666          6789999999995       4444


Q ss_pred             cCCCCchhhhHhhhcCcccChhhhhcC-ChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccc
Q 002846          272 SRDMDNNGQLDYGSSPMIDKLESNSSY-RFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID  350 (874)
Q Consensus       272 ~~gi~d~vtyn~LI~~~~~~~~~~~~g-~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~  350 (874)
                      . .-.+...|..+-..      +...| ++++|...|++.....  |+.                     ...|      
T Consensus        85 ~-~~~~~~~~~~l~~~------~~~~~~~~~~A~~~~~~a~~~~--~~~---------------------~~~~------  128 (330)
T 3hym_B           85 L-YPSNPVSWFAVGCY------YLMVGHKNEHARRYLSKATTLE--KTY---------------------GPAW------  128 (330)
T ss_dssp             H-CTTSTHHHHHHHHH------HHHSCSCHHHHHHHHHHHHTTC--TTC---------------------THHH------
T ss_pred             h-CcCCHHHHHHHHHH------HHHhhhhHHHHHHHHHHHHHhC--Ccc---------------------HHHH------
Confidence            3 22355667777777      88899 9999999999887653  221                     1122      


Q ss_pred             cCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHH
Q 002846          351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS  430 (874)
Q Consensus       351 ~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~  430 (874)
                           ..+...+...|++++|.+.|++..... +.+..++..+...|...|++++|...+++..+.. +.+...+..+..
T Consensus       129 -----~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~  201 (330)
T 3hym_B          129 -----IAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGV  201 (330)
T ss_dssp             -----HHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHH
T ss_pred             -----HHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence                 677788999999999999999988764 2345677779999999999999999999988763 345678888999


Q ss_pred             HHHhCCChhHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          431 VFCNNGDVDKACSVEEHMLEHG--------VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       431 a~~k~G~~~~A~~l~~eM~~~G--------v~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      .|...|++++|...++......        .......|..+-..+...|++++|...|++....
T Consensus       202 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  265 (330)
T 3hym_B          202 VAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL  265 (330)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence            9999999999999999987641        1344678999999999999999999999999876

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.04  E-value=4.8e-08  Score=103.90  Aligned_cols=246  Identities=8%  Similarity=-0.081  Sum_probs=184.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhh
Q 002846          192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD  271 (874)
Q Consensus       192 ~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~  271 (874)
                      ..|-.+-..+.+.|++++|+.+|+++.+.. +-+...+..+-.++.          ..|+.++|...|.       +...
T Consensus        22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~----------~~~~~~~A~~~~~-------~a~~   83 (327)
T 3cv0_A           22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQA----------ENEKDGLAIIALN-------HARM   83 (327)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----------HTTCHHHHHHHHH-------HHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH----------HcCCHHHHHHHHH-------HHHh
Confidence            345666778899999999999999998754 336677888877887          7899999999995       4433


Q ss_pred             cCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCccccccccccc
Q 002846          272 SRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDN  351 (874)
Q Consensus       272 ~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~  351 (874)
                      . .-.+...|..+...      +...|++++|...|+++....  |+.....        ..+....|+....       
T Consensus        84 ~-~~~~~~~~~~la~~------~~~~~~~~~A~~~~~~~~~~~--~~~~~~~--------~~~~~~~~~~~~~-------  139 (327)
T 3cv0_A           84 L-DPKDIAVHAALAVS------HTNEHNANAALASLRAWLLSQ--PQYEQLG--------SVNLQADVDIDDL-------  139 (327)
T ss_dssp             H-CTTCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHTS--TTTTTC-----------------------------
T ss_pred             c-CcCCHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHhC--CccHHHH--------HHHhHHHHHHHHH-------
Confidence            2 22355668888888      999999999999999998763  2221110        0000000000000       


Q ss_pred             CCccchHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHH
Q 002846          352 QDADEIRLSE--DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL  429 (874)
Q Consensus       352 ~~~~n~lI~~--~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI  429 (874)
                          ..+-..  +...|++++|.++|+++.... +.+..++..+...+...|++++|..+++++.+.. ..+...|..+.
T Consensus       140 ----~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~  213 (327)
T 3cv0_A          140 ----NVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLG  213 (327)
T ss_dssp             ----------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             ----HHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence                001022  567789999999999998764 3478899999999999999999999999988763 23567888899


Q ss_pred             HHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       430 ~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      ..|...|+.++|...|+.+.+.. ..+...|..+...+.+.|++++|...|++....
T Consensus       214 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  269 (327)
T 3cv0_A          214 ATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM  269 (327)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            99999999999999999988754 235788999999999999999999999998876

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=98.99  E-value=2.1e-08  Score=108.03  Aligned_cols=241  Identities=9%  Similarity=0.032  Sum_probs=178.4

Q ss_pred             HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHH
Q 002846          159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLL-YLCS  237 (874)
Q Consensus       159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL-~a~~  237 (874)
                      .....++.+.|...++..          .+|+..++..+...+++.|+.++|++.|+++...++.|+...+..++ .++.
T Consensus        43 ~yi~~g~~~~al~~~~~~----------~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~  112 (291)
T 3mkr_A           43 AYLAQRKYGVVLDEIKPS----------SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYF  112 (291)
T ss_dssp             HHHHTTCHHHHHHHSCTT----------SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHhccc----------CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHH
Confidence            344566777777544321          35677889999999999999999999999999888777665555444 5555


Q ss_pred             hcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCC
Q 002846          238 SAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS  317 (874)
Q Consensus       238 ~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~P  317 (874)
                                ..|+.++|...+.       .      -.+...+..+...      +.+.|++++|...|+++....  |
T Consensus       113 ----------~~g~~~~Al~~l~-------~------~~~~~~~~~l~~~------~~~~g~~~~A~~~l~~~~~~~--p  161 (291)
T 3mkr_A          113 ----------YDQNPDAALRTLH-------Q------GDSLECMAMTVQI------LLKLDRLDLARKELKKMQDQD--E  161 (291)
T ss_dssp             ----------HTTCHHHHHHHHT-------T------CCSHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHC--T
T ss_pred             ----------HCCCHHHHHHHHh-------C------CCCHHHHHHHHHH------HHHCCCHHHHHHHHHHHHhhC--c
Confidence                      7799999999995       1      1255668888888      999999999999999998873  5


Q ss_pred             CeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002846          318 NGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMA  397 (874)
Q Consensus       318 d~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~  397 (874)
                      +...+         .                     ....++..+...|++++|..+|+++... .+.+...|+.+..++
T Consensus       162 ~~~~~---------~---------------------l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~  210 (291)
T 3mkr_A          162 DATLT---------Q---------------------LATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACH  210 (291)
T ss_dssp             TCHHH---------H---------------------HHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHH
T ss_pred             CcHHH---------H---------------------HHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHH
Confidence            43211         0                     0022334444568999999999999987 466889999999999


Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHH
Q 002846          398 MSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK-ACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRV  476 (874)
Q Consensus       398 ~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~-A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A  476 (874)
                      .+.|++++|...|++..... +-+..++..++..+...|+.++ |.++++.+.+..  |+...   +.+...+.+.+|++
T Consensus       211 ~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~--P~~~~---~~d~~~~~~~fd~~  284 (291)
T 3mkr_A          211 MAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH--RSHPF---IKEYRAKENDFDRL  284 (291)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHH---HHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CCChH---HHHHHHHHHHHHHH
Confidence            99999999999999987652 2356678889999999999876 678999888743  65443   23334444444444


Q ss_pred             H
Q 002846          477 Y  477 (874)
Q Consensus       477 ~  477 (874)
                      .
T Consensus       285 ~  285 (291)
T 3mkr_A          285 V  285 (291)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.96  E-value=1.5e-09  Score=122.88  Aligned_cols=187  Identities=12%  Similarity=0.068  Sum_probs=69.7

Q ss_pred             HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhH
Q 002846          203 KRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLD  282 (874)
Q Consensus       203 k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn  282 (874)
                      +.|++++|.++++++.      +..+|..|..++.          +.|++++|++.|.             ..+|..+|.
T Consensus        15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l----------~~g~~~eAIdsfi-------------ka~D~~~y~   65 (449)
T 1b89_A           15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQL----------QKGMVKEAIDSYI-------------KADDPSSYM   65 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhCC------ChHHHHHHHHHHH----------HcCCHHHHHHHHH-------------cCCCHHHHH
Confidence            5678999999999983      3359999999999          8899999999994             234666899


Q ss_pred             hhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHH
Q 002846          283 YGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSED  362 (874)
Q Consensus       283 ~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~  362 (874)
                      .++.+      +...|++++|...+....+.  .+++.+.                                 +.++.+|
T Consensus        66 ~V~~~------ae~~g~~EeAi~yl~~ark~--~~~~~i~---------------------------------~~Li~~Y  104 (449)
T 1b89_A           66 EVVQA------ANTSGNWEELVKYLQMARKK--ARESYVE---------------------------------TELIFAL  104 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHH------HHhCCCHHHHHHHHHHHHHh--CccchhH---------------------------------HHHHHHH
Confidence            99999      99999999999955544442  3444445                                 8999999


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHH
Q 002846          363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKAC  442 (874)
Q Consensus       363 ~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~  442 (874)
                      ++.|+++++.++++       .|+..+|+.+.+.|...|.+++|..+|..+         ..|..+..++++.|++++|.
T Consensus       105 ~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AV  168 (449)
T 1b89_A          105 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAV  168 (449)
T ss_dssp             ----CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHH
T ss_pred             HHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHH
Confidence            99999999999885       378889999999999999999999999976         58999999999999999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHH
Q 002846          443 SVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLH  481 (874)
Q Consensus       443 ~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~  481 (874)
                      +.+..+      -++.+|..++.+|+..|+++.|.....
T Consensus       169 ea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l  201 (449)
T 1b89_A          169 DGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGL  201 (449)
T ss_dssp             HHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTT
T ss_pred             HHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHH
Confidence            999988      388999999999999999999955544

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.95  E-value=5.3e-08  Score=99.78  Aligned_cols=225  Identities=12%  Similarity=0.006  Sum_probs=182.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhh
Q 002846          192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD  271 (874)
Q Consensus       192 ~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~  271 (874)
                      ..|..+-..+.+.|++++|+.+|+++.+..  .+...|..+-.++.          ..|+.++|...+.       ....
T Consensus         6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~----------~~~~~~~A~~~~~-------~a~~   66 (258)
T 3uq3_A            6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEY----------EKGEYETAISTLN-------DAVE   66 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHH----------HTTCHHHHHHHHH-------HHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHH----------HcccHHHHHHHHH-------HHHH
Confidence            567788889999999999999999999877  78888988888888          7899999999995       2222


Q ss_pred             c-CCC-Cc----hhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCccccc
Q 002846          272 S-RDM-DN----NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKK  345 (874)
Q Consensus       272 ~-~gi-~d----~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~  345 (874)
                      . ... ++    ...|..+-..      +...|++++|...|.+.....  |+                           
T Consensus        67 ~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~a~~~~--~~---------------------------  111 (258)
T 3uq3_A           67 QGREMRADYKVISKSFARIGNA------YHKLGDLKKTIEYYQKSLTEH--RT---------------------------  111 (258)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHC--CC---------------------------
T ss_pred             hCcccccchHHHHHHHHHHHHH------HHHcccHHHHHHHHHHHHhcC--ch---------------------------
Confidence            1 011 11    4568888888      999999999999999887752  11                           


Q ss_pred             ccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccH
Q 002846          346 DWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY  425 (874)
Q Consensus       346 ~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tY  425 (874)
                                   -..+.+.|++++|...++.+.... +.+...|..+...+...|++++|...+++..+.. ..+...|
T Consensus       112 -------------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~  176 (258)
T 3uq3_A          112 -------------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGY  176 (258)
T ss_dssp             -------------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred             -------------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHH
Confidence                         134566788999999999988753 2346678889999999999999999999988763 2356778


Q ss_pred             HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       426 n~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      ..+-..|.+.|++++|...|+...+.. ..+...|..+-..+.+.|+.++|...|.+..+.
T Consensus       177 ~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  236 (258)
T 3uq3_A          177 SNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTK  236 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            888999999999999999999998754 234788889999999999999999999988765

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.92  E-value=5.5e-08  Score=111.58  Aligned_cols=84  Identities=12%  Similarity=-0.087  Sum_probs=67.6

Q ss_pred             HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 002846          159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS  238 (874)
Q Consensus       159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~  238 (874)
                      ...+.++.++|...|+++....       +.+...|..+...|.+.|++++|+..|+++.+.+ +-+...+..+-.++. 
T Consensus        34 ~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~-  104 (537)
T 3fp2_A           34 HFFTAKNFNEAIKYYQYAIELD-------PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANE-  104 (537)
T ss_dssp             HHHHTTCCC-CHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred             HHHHhccHHHHHHHHHHHHhhC-------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH-
Confidence            4567889999999999986542       2356889999999999999999999999998754 335677777777777 


Q ss_pred             cccCCCcccCCCCHHHHHHHHh
Q 002846          239 AAVGVVKPAKSGSGMRTLDTFE  260 (874)
Q Consensus       239 ~~~~~~~~~k~G~~~~A~~vf~  260 (874)
                               ..|+.++|...|.
T Consensus       105 ---------~~g~~~~A~~~~~  117 (537)
T 3fp2_A          105 ---------SLGNFTDAMFDLS  117 (537)
T ss_dssp             ---------HHTCHHHHHHHHH
T ss_pred             ---------HcCCHHHHHHHHH
Confidence                     7789999998884

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=98.91  E-value=4.6e-08  Score=106.40  Aligned_cols=258  Identities=10%  Similarity=-0.074  Sum_probs=199.9

Q ss_pred             HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 002846          159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS  238 (874)
Q Consensus       159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~  238 (874)
                      ...+.++..+|...|+.+....       +.+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++. 
T Consensus        73 ~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~-  143 (368)
T 1fch_A           73 RRLQEGDLPNAVLLFEAAVQQD-------PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT-  143 (368)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHSC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH-
Confidence            4567899999999999996542       2345789999999999999999999999998764 346788888888888 


Q ss_pred             cccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHh---------------hhcCcccChhhhhcCChHHH
Q 002846          239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDY---------------GSSPMIDKLESNSSYRFDDL  303 (874)
Q Consensus       239 ~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~---------------LI~~~~~~~~~~~~g~~e~A  303 (874)
                               ..|+.++|...|.       ++... ...+...+..               .+..      +...|++++|
T Consensus       144 ---------~~g~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~A  200 (368)
T 1fch_A          144 ---------NESLQRQACEILR-------DWLRY-TPAYAHLVTPAEEGAGGAGLGPSKRILGS------LLSDSLFLEV  200 (368)
T ss_dssp             ---------HTTCHHHHHHHHH-------HHHHT-STTTGGGCC---------------CTTHH------HHHHHHHHHH
T ss_pred             ---------HcCCHHHHHHHHH-------HHHHh-CcCcHHHHHHHHHHhhhhcccHHHHHHHH------HhhcccHHHH
Confidence                     7899999999995       33332 1112222211               2233      4478888999


Q ss_pred             HHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 002846          304 DSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEV  383 (874)
Q Consensus       304 ~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv  383 (874)
                      ...|.++....  |+..                   +..+|           ..+...+.+.|++++|...|+++.... 
T Consensus       201 ~~~~~~a~~~~--p~~~-------------------~~~~~-----------~~l~~~~~~~g~~~~A~~~~~~al~~~-  247 (368)
T 1fch_A          201 KELFLAAVRLD--PTSI-------------------DPDVQ-----------CGLGVLFNLSGEYDKAVDCFTAALSVR-  247 (368)
T ss_dssp             HHHHHHHHHHS--TTSC-------------------CHHHH-----------HHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHhC--cCcc-------------------cHHHH-----------HHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence            99998887753  2210                   11222           777888999999999999999988753 


Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCC---------
Q 002846          384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVY---------  454 (874)
Q Consensus       384 ~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~---------  454 (874)
                      +.+..+|..+...+...|++++|...|+++.+.. +.+...|..+-..|.+.|++++|...|+......-.         
T Consensus       248 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  326 (368)
T 1fch_A          248 PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGG  326 (368)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CC
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcccccc
Confidence            3467899999999999999999999999988752 235678888999999999999999999998764211         


Q ss_pred             -CCHHHHHHHHHHHHhcCCchHHHHHHHH
Q 002846          455 -PEEPELEALLRVSVEAGKGDRVYYLLHK  482 (874)
Q Consensus       455 -Pd~~ty~~LI~~~~~~G~~d~A~~ll~~  482 (874)
                       .....|..|..+|...|+.++|..++.+
T Consensus       327 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  355 (368)
T 1fch_A          327 AMSENIWSTLRLALSMLGQSDAYGAADAR  355 (368)
T ss_dssp             CCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred             chhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence             1268899999999999999999998763

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=98.89  E-value=1.1e-07  Score=97.79  Aligned_cols=199  Identities=10%  Similarity=-0.034  Sum_probs=126.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhh
Q 002846          192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD  271 (874)
Q Consensus       192 ~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~  271 (874)
                      ..|..+...+...|++++|+.+|+++.+.. +.+...+..+-.++.          ..|+.++|...|.           
T Consensus        38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~----------~~~~~~~A~~~~~-----------   95 (252)
T 2ho1_A           38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQ----------TEMEPKLADEEYR-----------   95 (252)
T ss_dssp             HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHH----------HTTCHHHHHHHHH-----------
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHH----------HcCCHHHHHHHHH-----------
Confidence            567788888999999999999999998653 234556666655555          5566666666663           


Q ss_pred             cCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCC-CeeeeccccHHHHHHhhhcCCCCcccccccccc
Q 002846          272 SRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS-NGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID  350 (874)
Q Consensus       272 ~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~P-d~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~  350 (874)
                                                           ++....  | +...+                            
T Consensus        96 -------------------------------------~a~~~~--~~~~~~~----------------------------  108 (252)
T 2ho1_A           96 -------------------------------------KALASD--SRNARVL----------------------------  108 (252)
T ss_dssp             -------------------------------------HHHHHC--TTCHHHH----------------------------
T ss_pred             -------------------------------------HHHHHC--cCcHHHH----------------------------
Confidence                                                 332221  1 11122                            


Q ss_pred             cCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHH
Q 002846          351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL  429 (874)
Q Consensus       351 ~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~P-d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI  429 (874)
                           ..+...|...|++++|.++|+++...+..| +...+..+...+...|++++|...+++..+.. ..+...|..+.
T Consensus       109 -----~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la  182 (252)
T 2ho1_A          109 -----NNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMA  182 (252)
T ss_dssp             -----HHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHH
T ss_pred             -----HHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHH
Confidence                 444455566666777777776666533334 34566666677777777777777777666542 12355566666


Q ss_pred             HHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       430 ~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      ..|...|+.++|..+++.+.+.. ..+...+..+...+...|+.++|..++.++...
T Consensus       183 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~  238 (252)
T 2ho1_A          183 DLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL  238 (252)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            77777777777777777766532 234556666667777777777777777777665

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=98.89  E-value=1.4e-07  Score=94.48  Aligned_cols=202  Identities=9%  Similarity=-0.038  Sum_probs=117.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhh
Q 002846          191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG  270 (874)
Q Consensus       191 ~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~  270 (874)
                      ...|..+...+...|++++|+.+|+++.+.. +.+...|..+...+.          ..|+.++|...+.       +..
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~----------~~~~~~~A~~~~~-------~a~   69 (225)
T 2vq2_A            8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQ----------YLKVNDKAQESFR-------QAL   69 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----------HTTCHHHHHHHHH-------HHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH----------HcCChHHHHHHHH-------HHH
Confidence            4678888889999999999999999998653 234566666666666          5667777777764       222


Q ss_pred             hcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccc
Q 002846          271 DSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID  350 (874)
Q Consensus       271 ~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~  350 (874)
                      .. .-.+...|.                                                                    
T Consensus        70 ~~-~~~~~~~~~--------------------------------------------------------------------   80 (225)
T 2vq2_A           70 SI-KPDSAEINN--------------------------------------------------------------------   80 (225)
T ss_dssp             HH-CTTCHHHHH--------------------------------------------------------------------
T ss_pred             Hh-CCCChHHHH--------------------------------------------------------------------
Confidence            21 111222333                                                                    


Q ss_pred             cCCccchHHHHHHhc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHH
Q 002846          351 NQDADEIRLSEDAKK-YAFQRGFEIYEKMCLDEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA  428 (874)
Q Consensus       351 ~~~~~n~lI~~~~k~-g~~~~A~~lf~~M~~~Gv~Pd-~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~L  428 (874)
                            .+...+... |++++|.++|+++...+..|+ ..++..+...+...|++++|...++++.+.. ..+...+..+
T Consensus        81 ------~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l  153 (225)
T 2vq2_A           81 ------NYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKEL  153 (225)
T ss_dssp             ------HHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred             ------HHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHH
Confidence                  334444555 555555555555554222222 4455555666666666666666666555432 1224455555


Q ss_pred             HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       429 I~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      ...|.+.|+.++|..+++.+.+..-..+...+..+...+...|+.+.|..++..+...
T Consensus       154 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  211 (225)
T 2vq2_A          154 ARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN  211 (225)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence            5566666666666666666555331134455555555556666666666666666543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=98.88  E-value=3.5e-08  Score=107.89  Aligned_cols=258  Identities=9%  Similarity=-0.071  Sum_probs=196.4

Q ss_pred             HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 002846          159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS  238 (874)
Q Consensus       159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~  238 (874)
                      ...+.++.++|...|+.+....       +.+..+|..+...|.+.|++++|+..|+++.+.. +.+..+|..+..+|. 
T Consensus        74 ~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~-  144 (365)
T 4eqf_A           74 KRLKEGDLPVTILFMEAAILQD-------PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT-  144 (365)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC-------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH-
Confidence            5667899999999999996542       2345789999999999999999999999998753 345788888988888 


Q ss_pred             cccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCch----------hhhHhhhcCcccChhhhhcCChHHHHHHHH
Q 002846          239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNN----------GQLDYGSSPMIDKLESNSSYRFDDLDSTFN  308 (874)
Q Consensus       239 ~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~----------vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~  308 (874)
                               ..|+.++|...|.       ++... .-.+.          ..++.+...      +...|++++|..+|+
T Consensus       145 ---------~~g~~~~A~~~~~-------~al~~-~p~~~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~A~~~~~  201 (365)
T 4eqf_A          145 ---------NTSHQQDACEALK-------NWIKQ-NPKYKYLVKNKKGSPGLTRRMSKS------PVDSSVLEGVKELYL  201 (365)
T ss_dssp             ---------HTTCHHHHHHHHH-------HHHHH-CHHHHCC-------------------------CCHHHHHHHHHHH
T ss_pred             ---------ccccHHHHHHHHH-------HHHHh-CccchHHHhhhccchHHHHHHHHH------HhhhhhHHHHHHHHH
Confidence                     7899999999995       33321 10011          123334556      888999999999999


Q ss_pred             HHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 002846          309 EKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEA  388 (874)
Q Consensus       309 eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~  388 (874)
                      ++....  |+..                   +...|           ..+...|.+.|++++|.+.|++..... +.+..
T Consensus       202 ~al~~~--p~~~-------------------~~~~~-----------~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~  248 (365)
T 4eqf_A          202 EAAHQN--GDMI-------------------DPDLQ-----------TGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYS  248 (365)
T ss_dssp             HHHHHS--CSSC-------------------CHHHH-----------HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred             HHHHhC--cCcc-------------------CHHHH-----------HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence            998763  3210                   11222           777888999999999999999988753 44688


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcC---C--------CCCH
Q 002846          389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG---V--------YPEE  457 (874)
Q Consensus       389 tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~G---v--------~Pd~  457 (874)
                      +|+.+..+|...|++++|...|++..+.. +.+..+|..+-..|.+.|+.++|...|+.+.+..   .        ..+.
T Consensus       249 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  327 (365)
T 4eqf_A          249 LWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISG  327 (365)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------C
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHH
Confidence            99999999999999999999999988762 2347788889999999999999999999987642   0        1136


Q ss_pred             HHHHHHHHHHHhcCCchHHHHHHHH
Q 002846          458 PELEALLRVSVEAGKGDRVYYLLHK  482 (874)
Q Consensus       458 ~ty~~LI~~~~~~G~~d~A~~ll~~  482 (874)
                      ..|..|-.++...|+.+.|..+..+
T Consensus       328 ~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          328 NIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            7899999999999999988887654

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.79  E-value=9.8e-07  Score=101.10  Aligned_cols=261  Identities=10%  Similarity=0.002  Sum_probs=196.6

Q ss_pred             CChhHHHHHHHHHhhCCCCCCCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 002846          164 TNDSGQYKVRGITDEKGSKKSKKDRSE-----QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS  238 (874)
Q Consensus       164 ~~~~~A~~vf~eM~~~g~k~~~g~~Pd-----~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~  238 (874)
                      ++..+|..+|+.+....  |+   .++     ..+|..+-..+...|++++|+..|+++...  .|+...|..+-..+. 
T Consensus       216 ~~~~~A~~~~~~~l~~~--p~---~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~-  287 (537)
T 3fp2_A          216 DLLTKSTDMYHSLLSAN--TV---DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLA-  287 (537)
T ss_dssp             HHHHHHHHHHHHHHC----CC---CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHHHHHC--CC---cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHH-
Confidence            46788999999985422  11   111     235666777888999999999999999875  466777777777776 


Q ss_pred             cccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCC
Q 002846          239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN  318 (874)
Q Consensus       239 ~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd  318 (874)
                               ..|+.++|...|.       +.... .-.+...|..+-..      +...|++++|...|++.....  |+
T Consensus       288 ---------~~~~~~~A~~~~~-------~~~~~-~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~a~~~~--~~  342 (537)
T 3fp2_A          288 ---------DKENSQEFFKFFQ-------KAVDL-NPEYPPTYYHRGQM------YFILQDYKNAKEDFQKAQSLN--PE  342 (537)
T ss_dssp             ---------CSSCCHHHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHC--TT
T ss_pred             ---------HhcCHHHHHHHHH-------HHhcc-CCCCHHHHHHHHHH------HHhcCCHHHHHHHHHHHHHhC--CC
Confidence                     8899999999995       44332 22355668888888      999999999999999988753  22


Q ss_pred             eeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002846          319 GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAM  398 (874)
Q Consensus       319 ~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~  398 (874)
                      .                     ...|           ..+...+.+.|++++|.++|+++.... +.+..++..+...+.
T Consensus       343 ~---------------------~~~~-----------~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~  389 (537)
T 3fp2_A          343 N---------------------VYPY-----------IQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILT  389 (537)
T ss_dssp             C---------------------SHHH-----------HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred             C---------------------HHHH-----------HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence            1                     1122           667788899999999999999998764 345678999999999


Q ss_pred             hcCChhHHHHHHHHHHHCCCC-C----CcccHHHHHHHHHhC----------CChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 002846          399 SMGDGDMAFDMVKRMKSLGIN-P----RLRSYGPALSVFCNN----------GDVDKACSVEEHMLEHGVYPEEPELEAL  463 (874)
Q Consensus       399 ~~G~~d~A~~l~~~M~~~Gi~-P----d~~tYn~LI~a~~k~----------G~~~~A~~l~~eM~~~Gv~Pd~~ty~~L  463 (874)
                      ..|++++|...|+++.+..-. +    ....+..+-..|...          |++++|...|+...+.. ..+...|..|
T Consensus       390 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l  468 (537)
T 3fp2_A          390 DRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGL  468 (537)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence            999999999999998765310 1    111133334566677          99999999999998754 2357888999


Q ss_pred             HHHHHhcCCchHHHHHHHHHHhcCCCCChh
Q 002846          464 LRVSVEAGKGDRVYYLLHKLRTSVRKVSPS  493 (874)
Q Consensus       464 I~~~~~~G~~d~A~~ll~~M~~~~~~~sp~  493 (874)
                      ...|.+.|+.++|...|++....  .++..
T Consensus       469 ~~~~~~~g~~~~A~~~~~~al~~--~~~~~  496 (537)
T 3fp2_A          469 AQLKLQMEKIDEAIELFEDSAIL--ARTMD  496 (537)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH--C--CH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHh--CCCcH
Confidence            99999999999999999999887  44433

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=98.75  E-value=7.6e-07  Score=91.46  Aligned_cols=179  Identities=8%  Similarity=-0.048  Sum_probs=140.4

Q ss_pred             hhhcCChHHHHHHHHHHHHcCCCCC-eeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHH
Q 002846          294 SNSSYRFDDLDSTFNEKENLGQFSN-GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGF  372 (874)
Q Consensus       294 ~~~~g~~e~A~~lf~eM~~~Gi~Pd-~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~  372 (874)
                      +...|++++|...|+++....  |+ ...+                                 ..+...+.+.|++++|.
T Consensus        47 ~~~~~~~~~A~~~~~~al~~~--~~~~~~~---------------------------------~~la~~~~~~~~~~~A~   91 (252)
T 2ho1_A           47 YLQRGNTEQAKVPLRKALEID--PSSADAH---------------------------------AALAVVFQTEMEPKLAD   91 (252)
T ss_dssp             HHHTTCTGGGHHHHHHHHHHC--TTCHHHH---------------------------------HHHHHHHHHTTCHHHHH
T ss_pred             HHHcCChHHHHHHHHHHHhcC--CChHHHH---------------------------------HHHHHHHHHcCCHHHHH
Confidence            778888999999998887763  32 2233                                 66777889999999999


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CcccHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 002846          373 EIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEH  451 (874)
Q Consensus       373 ~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~P-d~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~  451 (874)
                      ++|+++.... +.+..+|..+...|...|++++|.++++++...+..| +...|..+...|...|++++|...|+...+.
T Consensus        92 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  170 (252)
T 2ho1_A           92 EEYRKALASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL  170 (252)
T ss_dssp             HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            9999988764 3478899999999999999999999999988744455 4567777888999999999999999998876


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCC-hhHHHH-HHHHHhcchHHHhh
Q 002846          452 GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVS-PSTADV-IAKWFNSKEAARLG  511 (874)
Q Consensus       452 Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~s-p~T~~~-I~~~~~s~~~~~a~  511 (874)
                      . ..+...+..|...+...|+.++|..+|.++...  .+. +..+.. ..-+...+...++.
T Consensus       171 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~  229 (252)
T 2ho1_A          171 N-RNQPSVALEMADLLYKEREYVPARQYYDLFAQG--GGQNARSLLLGIRLAKVFEDRDTAA  229 (252)
T ss_dssp             C-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             C-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHccCHHHHH
Confidence            4 235788999999999999999999999999875  333 334444 34444455544443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=98.75  E-value=7.6e-07  Score=89.00  Aligned_cols=175  Identities=9%  Similarity=-0.019  Sum_probs=139.4

Q ss_pred             hhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCC-eeeeccccHHHHHHhhhcCCCCcccccccccccCCccch
Q 002846          279 GQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN-GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEI  357 (874)
Q Consensus       279 vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd-~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~  357 (874)
                      ..|..+...      +...|++++|...|.++....  |+ ...|                                 ..
T Consensus         9 ~~~~~~~~~------~~~~~~~~~A~~~~~~~~~~~--~~~~~~~---------------------------------~~   47 (225)
T 2vq2_A            9 NIKTQLAME------YMRGQDYRQATASIEDALKSD--PKNELAW---------------------------------LV   47 (225)
T ss_dssp             HHHHHHHHH------HHHTTCHHHHHHHHHHHHHHC--TTCHHHH---------------------------------HH
T ss_pred             HHHHHHHHH------HHHHhhHHHHHHHHHHHHHhC--ccchHHH---------------------------------HH
Confidence            345555555      888899999999999887753  33 2233                                 66


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhC
Q 002846          358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM-GDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNN  435 (874)
Q Consensus       358 lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~-G~~d~A~~l~~~M~~~Gi~Pd-~~tYn~LI~a~~k~  435 (874)
                      +...+...|+.++|.++|+++.... +.+..++..+...+... |++++|..+++++.+.+..|+ ...|..+...|...
T Consensus        48 l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  126 (225)
T 2vq2_A           48 RAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQ  126 (225)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHc
Confidence            7778889999999999999988754 34678999999999999 999999999999988433343 56778888899999


Q ss_pred             CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC--ChhHHHHH
Q 002846          436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKV--SPSTADVI  498 (874)
Q Consensus       436 G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~--sp~T~~~I  498 (874)
                      |+.++|...|+++.+.. ..+...+..+...+.+.|+.++|..+++++...  .+  .+..+..+
T Consensus       127 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~  188 (225)
T 2vq2_A          127 GQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSR--VEVLQADDLLLG  188 (225)
T ss_dssp             TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCSCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCCHHHHHHH
Confidence            99999999999998754 234788899999999999999999999998876  44  33455443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.72  E-value=6e-08  Score=100.71  Aligned_cols=84  Identities=11%  Similarity=-0.074  Sum_probs=59.9

Q ss_pred             cCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccC
Q 002846          163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVG  242 (874)
Q Consensus       163 ~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~  242 (874)
                      .++.++|...|+.+......  . .+.+...|..+...+...|++++|+..|+++.+.. +.+...|..+-..+.     
T Consensus        18 ~~~~~~A~~~~~~~~~~~~~--~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~-----   88 (275)
T 1xnf_A           18 TLQQEVILARMEQILASRAL--T-DDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLT-----   88 (275)
T ss_dssp             CHHHHHHHHHHHHHHTSSCC--C-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH-----
T ss_pred             cchHHHHHHHHHHHHhcccc--c-CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHH-----
Confidence            45678899999998654210  0 01235678888899999999999999999998753 234667776666666     


Q ss_pred             CCcccCCCCHHHHHHHHh
Q 002846          243 VVKPAKSGSGMRTLDTFE  260 (874)
Q Consensus       243 ~~~~~k~G~~~~A~~vf~  260 (874)
                           ..|+.++|...|.
T Consensus        89 -----~~~~~~~A~~~~~  101 (275)
T 1xnf_A           89 -----QAGNFDAAYEAFD  101 (275)
T ss_dssp             -----HTTCHHHHHHHHH
T ss_pred             -----HccCHHHHHHHHH
Confidence                 5667777777764

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.62  E-value=8.2e-07  Score=92.03  Aligned_cols=222  Identities=9%  Similarity=-0.095  Sum_probs=169.5

Q ss_pred             HcCCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchh
Q 002846          203 KRGDVMGAIRLYDKAQREGIK---LGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNG  279 (874)
Q Consensus       203 k~G~~~~Al~lf~~M~~~Gi~---pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~v  279 (874)
                      ..|++++|+..|+++.+....   .+..+|..+-.++.          ..|+.++|...|.       +.... .-.+..
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~~~~~~A~~~~~-------~al~~-~~~~~~   78 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYD----------SLGLRALARNDFS-------QALAI-RPDMPE   78 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHH----------HTTCHHHHHHHHH-------HHHHH-CCCCHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHH----------HcccHHHHHHHHH-------HHHHc-CCCcHH
Confidence            458899999999999976321   13566777777777          7899999999995       44433 333566


Q ss_pred             hhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHH
Q 002846          280 QLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRL  359 (874)
Q Consensus       280 tyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI  359 (874)
                      .|..+-..      +...|++++|...|++.....  |+.                     ...|           ..+-
T Consensus        79 ~~~~la~~------~~~~~~~~~A~~~~~~al~~~--~~~---------------------~~~~-----------~~la  118 (275)
T 1xnf_A           79 VFNYLGIY------LTQAGNFDAAYEAFDSVLELD--PTY---------------------NYAH-----------LNRG  118 (275)
T ss_dssp             HHHHHHHH------HHHTTCHHHHHHHHHHHHHHC--TTC---------------------THHH-----------HHHH
T ss_pred             HHHHHHHH------HHHccCHHHHHHHHHHHHhcC--ccc---------------------cHHH-----------HHHH
Confidence            78888888      999999999999999988753  221                     1222           6777


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChh
Q 002846          360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD  439 (874)
Q Consensus       360 ~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~  439 (874)
                      ..|.+.|++++|.+.|+++...  .|+...+..++..+...|++++|...+++.... ..++...+. ++..+...++.+
T Consensus       119 ~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~  194 (275)
T 1xnf_A          119 IALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK-SDKEQWGWN-IVEFYLGNISEQ  194 (275)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-SCCCSTHHH-HHHHHTTSSCHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCcchHHHH-HHHHHHHhcCHH
Confidence            8899999999999999999875  355556666666777889999999999877765 234444444 777788888899


Q ss_pred             HHHHHHHHHHHcCCC--C-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          440 KACSVEEHMLEHGVY--P-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       440 ~A~~l~~eM~~~Gv~--P-d~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      +|...+.........  | +...|..+-..|.+.|+.++|...|++....
T Consensus       195 ~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  244 (275)
T 1xnf_A          195 TLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN  244 (275)
T ss_dssp             HHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence            999999887654211  1 1577888999999999999999999999876

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.61  E-value=2.1e-05  Score=82.26  Aligned_cols=226  Identities=12%  Similarity=-0.024  Sum_probs=173.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhh
Q 002846          191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG  270 (874)
Q Consensus       191 ~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~  270 (874)
                      ..++..+=..|.+.|++++|+..|.+..+.|   +...+..|-..|....      ...++.++|...|.       +..
T Consensus         6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~------~~~~~~~~A~~~~~-------~a~   69 (273)
T 1ouv_A            6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQ------GVEKNLKKAASFYA-------KAC   69 (273)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS------SSCCCHHHHHHHHH-------HHH
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC------CcCCCHHHHHHHHH-------HHH
Confidence            4566777778889999999999999999843   4456666666666210      02789999999995       333


Q ss_pred             hcCCCCchhhhHhhhcCcccChhhhh----cCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccc
Q 002846          271 DSRDMDNNGQLDYGSSPMIDKLESNS----SYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKD  346 (874)
Q Consensus       271 ~~~gi~d~vtyn~LI~~~~~~~~~~~----~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~  346 (874)
                      +. +  +...+..+-..      |..    .+++++|...|++....+   +...+                        
T Consensus        70 ~~-~--~~~a~~~lg~~------~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~------------------------  113 (273)
T 1ouv_A           70 DL-N--YSNGCHLLGNL------YYSGQGVSQNTNKALQYYSKACDLK---YAEGC------------------------  113 (273)
T ss_dssp             HT-T--CHHHHHHHHHH------HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH------------------------
T ss_pred             HC-C--CHHHHHHHHHH------HhCCCCcccCHHHHHHHHHHHHHcC---CccHH------------------------
Confidence            32 2  44455555555      666    899999999999888775   22222                        


Q ss_pred             cccccCCccchHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCC
Q 002846          347 WSIDNQDADEIRLSEDAK----KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGI  418 (874)
Q Consensus       347 w~i~~~~~~n~lI~~~~k----~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~----~G~~d~A~~l~~~M~~~Gi  418 (874)
                               ..+-..|..    .++.++|.+.|++..+.+   +...+..+-..|..    .++.++|...|++..+.+ 
T Consensus       114 ---------~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-  180 (273)
T 1ouv_A          114 ---------ASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK-  180 (273)
T ss_dssp             ---------HHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred             ---------HHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-
Confidence                     444455666    899999999999999876   67788888888888    999999999999988875 


Q ss_pred             CCCcccHHHHHHHHHh----CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCchHHHHHHHHHHhc
Q 002846          419 NPRLRSYGPALSVFCN----NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE----AGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       419 ~Pd~~tYn~LI~a~~k----~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~----~G~~d~A~~ll~~M~~~  486 (874)
                        +...+..+-..|..    .++.++|...|+...+.+  | ...+..|-..|.+    .++.++|...|++..+.
T Consensus       181 --~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~-~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~  251 (273)
T 1ouv_A          181 --DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--N-GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL  251 (273)
T ss_dssp             --CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC--C-HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence              34666667778888    999999999999998875  3 6677777788888    89999999999998877

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=98.61  E-value=6.4e-07  Score=91.02  Aligned_cols=200  Identities=16%  Similarity=0.084  Sum_probs=123.1

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhh
Q 002846          190 EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTEL  269 (874)
Q Consensus       190 d~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em  269 (874)
                      ....|..+-..+.+.|++++|+.+|+++.+.. +.+...+..+-..+.          ..|+.++|...|          
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~----------~~~~~~~A~~~~----------   80 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLS----------SVNELERALAFY----------   80 (243)
T ss_dssp             --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHH----------HTTCHHHHHHHH----------
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH----------HcCCHHHHHHHH----------
Confidence            34667777788889999999999999988632 224555555555555          455555555555          


Q ss_pred             hhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCC-eeeeccccHHHHHHhhhcCCCCcccccccc
Q 002846          270 GDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN-GHMKLNSQLLDGRSNLERGPDDQSRKKDWS  348 (874)
Q Consensus       270 ~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd-~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~  348 (874)
                                                            ++.....  |+ ...+                          
T Consensus        81 --------------------------------------~~~~~~~--~~~~~~~--------------------------   94 (243)
T 2q7f_A           81 --------------------------------------DKALELD--SSAATAY--------------------------   94 (243)
T ss_dssp             --------------------------------------HHHHHHC--TTCHHHH--------------------------
T ss_pred             --------------------------------------HHHHHcC--CcchHHH--------------------------
Confidence                                                  3333321  11 1112                          


Q ss_pred             cccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHH
Q 002846          349 IDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA  428 (874)
Q Consensus       349 i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~L  428 (874)
                             ..+...+...|++++|.++|+++.... +.+...+..+...+...|++++|..+++++.+.. ..+...+..+
T Consensus        95 -------~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l  165 (243)
T 2q7f_A           95 -------YGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQF  165 (243)
T ss_dssp             -------HHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             -------HHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHH
Confidence                   445556667777788888777776643 3456677888888888888888888888877652 2346677777


Q ss_pred             HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       429 I~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      ...|.+.|+.++|...|+.+.... ..+...|..+...|...|+.++|...|+++...
T Consensus       166 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  222 (243)
T 2q7f_A          166 GMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI  222 (243)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence            788888888888888888877653 235677888888888888889998888888776

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.59  E-value=4.6e-06  Score=85.11  Aligned_cols=217  Identities=10%  Similarity=0.030  Sum_probs=167.8

Q ss_pred             HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCC----HHHHHHH
Q 002846          159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREG--IKLG----QYHYNVL  232 (874)
Q Consensus       159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~G--i~pd----~~tyn~L  232 (874)
                      .....++.++|...|++.....  .      +...|..+-..|...|++++|+..|+++....  ..++    ...|..+
T Consensus        14 ~~~~~~~~~~A~~~~~~a~~~~--~------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l   85 (258)
T 3uq3_A           14 KFYKARQFDEAIEHYNKAWELH--K------DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI   85 (258)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS--C------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhh--c------cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence            4456789999999999987654  2      33789999999999999999999999988532  2233    4677777


Q ss_pred             HHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHH
Q 002846          233 LYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKEN  312 (874)
Q Consensus       233 L~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~  312 (874)
                      -..+.          ..|+.++|...|.       +.... . ++       -..      +...|++++|...++++..
T Consensus        86 ~~~~~----------~~~~~~~A~~~~~-------~a~~~-~-~~-------~~~------~~~~~~~~~a~~~~~~~~~  133 (258)
T 3uq3_A           86 GNAYH----------KLGDLKKTIEYYQ-------KSLTE-H-RT-------ADI------LTKLRNAEKELKKAEAEAY  133 (258)
T ss_dssp             HHHHH----------HTTCHHHHHHHHH-------HHHHH-C-CC-------HHH------HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH----------HcccHHHHHHHHH-------HHHhc-C-ch-------hHH------HHHHhHHHHHHHHHHHHHH
Confidence            77777          7899999999995       33221 0 01       112      6677888999999988877


Q ss_pred             cCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 002846          313 LGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTA  392 (874)
Q Consensus       313 ~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~  392 (874)
                      ..  |+..                     ..|           ..+-..+...|++++|.+.|++..... +.+..+|..
T Consensus       134 ~~--~~~~---------------------~~~-----------~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~  178 (258)
T 3uq3_A          134 VN--PEKA---------------------EEA-----------RLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSN  178 (258)
T ss_dssp             CC--HHHH---------------------HHH-----------HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred             cC--cchH---------------------HHH-----------HHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHH
Confidence            52  2111                     112           566778889999999999999988754 346889999


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 002846          393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH  451 (874)
Q Consensus       393 LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~  451 (874)
                      +...+...|++++|...|++..+.. +.+...|..+-..|.+.|+.++|...|+...+.
T Consensus       179 l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  236 (258)
T 3uq3_A          179 RAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTK  236 (258)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            9999999999999999999988763 234677888889999999999999999987653

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=98.56  E-value=1.4e-06  Score=88.44  Aligned_cols=187  Identities=7%  Similarity=-0.061  Sum_probs=133.2

Q ss_pred             hhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCe-eeeccccHHHHHHhhhcCCCCcccccccccccCCccch
Q 002846          279 GQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG-HMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEI  357 (874)
Q Consensus       279 vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~-~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~  357 (874)
                      ..|..+-..      +...|++++|..+|+++...  .|+. ..+                                 ..
T Consensus        24 ~~~~~~a~~------~~~~~~~~~A~~~~~~~l~~--~~~~~~~~---------------------------------~~   62 (243)
T 2q7f_A           24 MTGGQQMGR------GSEFGDYEKAAEAFTKAIEE--NKEDAIPY---------------------------------IN   62 (243)
T ss_dssp             ------------------------CCTTHHHHHTT--CTTCHHHH---------------------------------HH
T ss_pred             HHHHHHHHH------HHHhhCHHHHHHHHHHHHHh--CcccHHHH---------------------------------HH
Confidence            345555555      78889999999999988774  3432 233                                 66


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCC
Q 002846          358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD  437 (874)
Q Consensus       358 lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~  437 (874)
                      +...+.+.|++++|.+.|++..... +.+..++..+...+...|++++|..+++++.+.. ..+...|..+...|.+.|+
T Consensus        63 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~  140 (243)
T 2q7f_A           63 FANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQ  140 (243)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcc
Confidence            6778889999999999999988764 3478899999999999999999999999988763 2456778888899999999


Q ss_pred             hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCC-hhHHHH-HHHHHhcchHHHhh
Q 002846          438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVS-PSTADV-IAKWFNSKEAARLG  511 (874)
Q Consensus       438 ~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~s-p~T~~~-I~~~~~s~~~~~a~  511 (874)
                      .++|..+++.+.+.. ..+...+..+...+.+.|++++|..+|.++...  .+. +.++.. ...+...+...++.
T Consensus       141 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~  213 (243)
T 2q7f_A          141 PKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ--DPGHADAFYNAGVTYAYKENREKAL  213 (243)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTHHH
T ss_pred             HHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHccCHHHHH
Confidence            999999999988753 236788889999999999999999999998876  333 334444 44555555544443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.54  E-value=9.9e-07  Score=92.87  Aligned_cols=245  Identities=8%  Similarity=-0.045  Sum_probs=138.2

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhc
Q 002846          190 EQFQLRVELDMCSKRGDVMGAIRLYDKAQRE-------GIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVS  262 (874)
Q Consensus       190 d~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~-------Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~  262 (874)
                      +..+|..+-..+...|++++|+.+|+++.+.       .-......+..+-..|.          ..|+.++|...+.  
T Consensus        26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~----------~~g~~~~A~~~~~--   93 (311)
T 3nf1_A           26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYR----------DQNKYKDAANLLN--   93 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHH----------HTTCHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH----------HCCCHHHHHHHHH--
Confidence            3467888899999999999999999999863       22333455666666666          6788888888885  


Q ss_pred             ccCchhhhhc------CCCC-chhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhh
Q 002846          263 TMNSTELGDS------RDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLE  335 (874)
Q Consensus       263 ~~~s~em~~~------~gi~-d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~  335 (874)
                           +....      ..-+ ....|..+-..      +...|++++|...|.+.....                    .
T Consensus        94 -----~al~~~~~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~A~~~~~~a~~~~--------------------~  142 (311)
T 3nf1_A           94 -----DALAIREKTLGKDHPAVAATLNNLAVL------YGKRGKYKEAEPLCKRALEIR--------------------E  142 (311)
T ss_dssp             -----HHHHHHHHHHCTTCHHHHHHHHHHHHH------HHTTTCHHHHHHHHHHHHHHH--------------------H
T ss_pred             -----HHHHHHHHHhCCCChHHHHHHHHHHHH------HHHcCcHHHHHHHHHHHHHHH--------------------H
Confidence                 22111      0111 23446666666      777777888877777665431                    0


Q ss_pred             cC-CCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCChhHHH
Q 002846          336 RG-PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD------EVPM-NEASLTAVGRMAMSMGDGDMAF  407 (874)
Q Consensus       336 ~m-~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~------Gv~P-d~~tyn~LI~~~~~~G~~d~A~  407 (874)
                      .. .++....       ......+-..+...|++++|.++|+++...      +-.| ...++..+...|...|++++|.
T Consensus       143 ~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  215 (311)
T 3nf1_A          143 KVLGKDHPDV-------AKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAE  215 (311)
T ss_dssp             HHHCTTCHHH-------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HhcCCCChHH-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            00 0000000       001122334556677777777777776653      1122 2346677777777777777777


Q ss_pred             HHHHHHHHC-------CCCCCcccHHHHHHHHHh-------CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCc
Q 002846          408 DMVKRMKSL-------GINPRLRSYGPALSVFCN-------NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG  473 (874)
Q Consensus       408 ~l~~~M~~~-------Gi~Pd~~tYn~LI~a~~k-------~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~  473 (874)
                      ..++++...       ...|........+..+..       .+.+.+|...+....... ..+..+|..|...|.+.|++
T Consensus       216 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~  294 (311)
T 3nf1_A          216 TLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKF  294 (311)
T ss_dssp             HHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCH
Confidence            777776642       122332222222222222       233344444444433211 22445677888888899999


Q ss_pred             hHHHHHHHHHHh
Q 002846          474 DRVYYLLHKLRT  485 (874)
Q Consensus       474 d~A~~ll~~M~~  485 (874)
                      ++|..+|++..+
T Consensus       295 ~~A~~~~~~al~  306 (311)
T 3nf1_A          295 EAAETLEEAAMR  306 (311)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999887654

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.47  E-value=2.5e-05  Score=83.88  Aligned_cols=227  Identities=10%  Similarity=0.007  Sum_probs=164.6

Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCH-------HHHHHHHhhcccCchhhhhcCCCCchhh
Q 002846          208 MGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSG-------MRTLDTFEVSTMNSTELGDSRDMDNNGQ  280 (874)
Q Consensus       208 ~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~-------~~A~~vf~v~~~~s~em~~~~gi~d~vt  280 (874)
                      ++|+.+|+++.... +-+...|..+...+...+.   ...+.|++       ++|..+|.       .......-.+...
T Consensus        33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~---~l~~~g~~~~~~~~~~~A~~~~~-------rAl~~~~p~~~~~  101 (308)
T 2ond_A           33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSK---LLAEKGDMNNAKLFSDEAANIYE-------RAISTLLKKNMLL  101 (308)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHH---HHHHTSCCHHHHHHHHHHHHHHH-------HHHTTTTTTCHHH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhch---hhhhccchhhcccchHHHHHHHH-------HHHHHhCcccHHH
Confidence            68889999998642 3455677766666542100   00023564       88999985       3332101124556


Q ss_pred             hHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHH
Q 002846          281 LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLS  360 (874)
Q Consensus       281 yn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~  360 (874)
                      |..+...      +.+.|++++|..+|++....  .|+...                    ..|           ..+..
T Consensus       102 ~~~~~~~------~~~~~~~~~A~~~~~~al~~--~p~~~~--------------------~~~-----------~~~~~  142 (308)
T 2ond_A          102 YFAYADY------EESRMKYEKVHSIYNRLLAI--EDIDPT--------------------LVY-----------IQYMK  142 (308)
T ss_dssp             HHHHHHH------HHHTTCHHHHHHHHHHHHTS--SSSCTH--------------------HHH-----------HHHHH
T ss_pred             HHHHHHH------HHhcCCHHHHHHHHHHHHhc--cccCcc--------------------HHH-----------HHHHH
Confidence            8888888      88999999999999998874  443321                    023           67777


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChh
Q 002846          361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAM-SMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD  439 (874)
Q Consensus       361 ~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~-~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~  439 (874)
                      .+.+.|++++|..+|++..... +++...|........ ..|+.++|..+|++..+.. .-+...|..++..+.+.|+.+
T Consensus       143 ~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~  220 (308)
T 2ond_A          143 FARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDN  220 (308)
T ss_dssp             HHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHH
T ss_pred             HHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHH
Confidence            8888999999999999998764 234455554444432 3699999999999887652 234677888888999999999


Q ss_pred             HHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          440 KACSVEEHMLEHG-VYP--EEPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       440 ~A~~l~~eM~~~G-v~P--d~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      +|..+|+...... +.|  ....|..++..+.+.|+.++|..++.++.+.
T Consensus       221 ~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~  270 (308)
T 2ond_A          221 NTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             HHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            9999999999873 455  4678999999999999999999999999876

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=98.46  E-value=3.2e-06  Score=86.25  Aligned_cols=210  Identities=13%  Similarity=0.012  Sum_probs=123.9

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchh
Q 002846          189 SEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTE  268 (874)
Q Consensus       189 Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~e  268 (874)
                      ++...+..+-..+.+.|++++|+..|++..+.. +-+...|..+-.++.          +.|+.++|...|.       .
T Consensus         3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~----------~~g~~~~A~~~~~-------~   64 (217)
T 2pl2_A            3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQL----------KLGLVNPALENGK-------T   64 (217)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHH----------HTTCHHHHHHHHH-------H
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH----------HcCCHHHHHHHHH-------H
Confidence            444678888889999999999999999998643 234566666666777          7899999999995       3


Q ss_pred             hhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccc
Q 002846          269 LGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWS  348 (874)
Q Consensus       269 m~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~  348 (874)
                      .... .-.+...|..+-..      +...             ....  +                               
T Consensus        65 al~~-~P~~~~a~~~lg~~------~~~~-------------~~~~--~-------------------------------   91 (217)
T 2pl2_A           65 LVAR-TPRYLGGYMVLSEA------YVAL-------------YRQA--E-------------------------------   91 (217)
T ss_dssp             HHHH-CTTCHHHHHHHHHH------HHHH-------------HHTC--S-------------------------------
T ss_pred             HHHh-CCCcHHHHHHHHHH------HHHh-------------hhhh--h-------------------------------
Confidence            3322 11233344444333      3222             0000  0                               


Q ss_pred             cccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHH
Q 002846          349 IDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA  428 (874)
Q Consensus       349 i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~L  428 (874)
                             .    .+...|++++|...|++..+.. +-+...|..+-..+...|++++|...|++..+..  .+...+..+
T Consensus        92 -------~----~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l  157 (217)
T 2pl2_A           92 -------D----RERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL  157 (217)
T ss_dssp             -------S----HHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred             -------h----hcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence                   0    1123456666666666665532 2245666777777777777777777777776665  566666667


Q ss_pred             HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 002846          429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR  484 (874)
Q Consensus       429 I~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~  484 (874)
                      -..|...|+.++|...|+...+.. +-+...+..+-..+...|+.++|...|++..
T Consensus       158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            777777777777777777776643 1245666667777777777777777776654

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=98.45  E-value=4.3e-06  Score=85.28  Aligned_cols=200  Identities=12%  Similarity=-0.042  Sum_probs=132.4

Q ss_pred             CCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHH
Q 002846          223 KLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDD  302 (874)
Q Consensus       223 ~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~  302 (874)
                      +++...+..+-..+.          ..|+.++|...|.       +.... .-.+...|..+-..      +.+.|++++
T Consensus         2 p~~~~~~~~lg~~~~----------~~g~~~~A~~~~~-------~al~~-~p~~~~a~~~lg~~------~~~~g~~~~   57 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLY----------ALGRYDAALTLFE-------RALKE-NPQDPEALYWLART------QLKLGLVNP   57 (217)
T ss_dssp             --CCHHHHHHHHHHH----------HTTCHHHHHHHHH-------HHHTT-SSSCHHHHHHHHHH------HHHTTCHHH
T ss_pred             CCcHHHHHHHHHHHH----------HcCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHcCCHHH
Confidence            345566666666666          7799999999995       33332 22355667777777      889999999


Q ss_pred             HHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002846          303 LDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDE  382 (874)
Q Consensus       303 A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~G  382 (874)
                      |...|++.....  |+....                     |           ..+-..+.+             +....
T Consensus        58 A~~~~~~al~~~--P~~~~a---------------------~-----------~~lg~~~~~-------------~~~~~   90 (217)
T 2pl2_A           58 ALENGKTLVART--PRYLGG---------------------Y-----------MVLSEAYVA-------------LYRQA   90 (217)
T ss_dssp             HHHHHHHHHHHC--TTCHHH---------------------H-----------HHHHHHHHH-------------HHHTC
T ss_pred             HHHHHHHHHHhC--CCcHHH---------------------H-----------HHHHHHHHH-------------hhhhh
Confidence            999999887753  332111                     1           111111111             11111


Q ss_pred             CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHH
Q 002846          383 VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELE  461 (874)
Q Consensus       383 v~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd-~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~  461 (874)
                        .+         .+...|++++|...|++..+.  .|+ ...|..+=..|...|+.++|...|+...+..  .+...+.
T Consensus        91 --~~---------~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~  155 (217)
T 2pl2_A           91 --ED---------RERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS  155 (217)
T ss_dssp             --SS---------HHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred             --hh---------hcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence              11         123468999999999998875  454 5667777788899999999999999999887  7889999


Q ss_pred             HHHHHHHhcCCchHHHHHHHHHHhcCCCCChh-HHHH-HHHHHhcchHHHh
Q 002846          462 ALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS-TADV-IAKWFNSKEAARL  510 (874)
Q Consensus       462 ~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~-T~~~-I~~~~~s~~~~~a  510 (874)
                      .|-..|...|++++|...|++....  .|... .+.. ...+...+...++
T Consensus       156 ~la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A  204 (217)
T 2pl2_A          156 ALAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEA  204 (217)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC-------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHH
Confidence            9999999999999999999999886  44433 4433 3333344444333

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=98.39  E-value=2.7e-05  Score=80.57  Aligned_cols=128  Identities=11%  Similarity=-0.088  Sum_probs=94.2

Q ss_pred             chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHh
Q 002846          356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCN  434 (874)
Q Consensus       356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd-~~tYn~LI~a~~k  434 (874)
                      ..+-..|...|++++|.+.|++..... +-+..+|..+...+...+++++|...|++..+.  .|+ ...|..+-..+..
T Consensus       112 ~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~  188 (272)
T 3u4t_A          112 GQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAA  188 (272)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHH
Confidence            566677888899999999998877652 335666766663445556999999999988775  344 4566666677777


Q ss_pred             CCC---hhHHHHHHHHHHHcC-CCCC------HHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          435 NGD---VDKACSVEEHMLEHG-VYPE------EPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       435 ~G~---~~~A~~l~~eM~~~G-v~Pd------~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      .|+   .++|...+++..+.. -.|+      ...|..|-..|.+.|+.++|...|++..+.
T Consensus       189 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  250 (272)
T 3u4t_A          189 QDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL  250 (272)
T ss_dssp             HSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            777   777888888776541 1233      256777888889999999999999998876

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.30  E-value=0.00015  Score=75.66  Aligned_cols=217  Identities=13%  Similarity=-0.000  Sum_probs=165.4

Q ss_pred             HHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002846          160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSK----RGDVMGAIRLYDKAQREGIKLGQYHYNVLLYL  235 (874)
Q Consensus       160 ~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k----~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a  235 (874)
                      ....++..+|...|+...+.+         +...+..+-..|..    .|++++|+..|++..+.+   +...+..|=..
T Consensus        16 ~~~~~~~~~A~~~~~~a~~~~---------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~   83 (273)
T 1ouv_A           16 SYKEKDFTQAKKYFEKACDLK---------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNL   83 (273)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence            345678999999999986521         23677777788888    999999999999999887   66777777777


Q ss_pred             HHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhh----cCChHHHHHHHHHHH
Q 002846          236 CSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNS----SYRFDDLDSTFNEKE  311 (874)
Q Consensus       236 ~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~----~g~~e~A~~lf~eM~  311 (874)
                      |....      ...++.++|...|.       ...+. +  +...+..+-..      |..    .+++++|...|++..
T Consensus        84 ~~~g~------~~~~~~~~A~~~~~-------~a~~~-~--~~~a~~~lg~~------~~~~~~~~~~~~~A~~~~~~a~  141 (273)
T 1ouv_A           84 YYSGQ------GVSQNTNKALQYYS-------KACDL-K--YAEGCASLGGI------YHDGKVVTRDFKKAVEYFTKAC  141 (273)
T ss_dssp             HHHTS------SSCCCHHHHHHHHH-------HHHHT-T--CHHHHHHHHHH------HHHCSSSCCCHHHHHHHHHHHH
T ss_pred             HhCCC------CcccCHHHHHHHHH-------HHHHc-C--CccHHHHHHHH------HHcCCCcccCHHHHHHHHHHHH
Confidence            76210      02799999999995       33332 2  44455555555      666    899999999999988


Q ss_pred             HcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCH
Q 002846          312 NLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAK----KYAFQRGFEIYEKMCLDEVPMNE  387 (874)
Q Consensus       312 ~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k----~g~~~~A~~lf~~M~~~Gv~Pd~  387 (874)
                      +.+   +...+                                 ..+-..|..    .++.++|.+.|++..+.+   +.
T Consensus       142 ~~~---~~~a~---------------------------------~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~  182 (273)
T 1ouv_A          142 DLN---DGDGC---------------------------------TILGSLYDAGRGTPKDLKKALASYDKACDLK---DS  182 (273)
T ss_dssp             HTT---CHHHH---------------------------------HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred             hcC---cHHHH---------------------------------HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence            875   22222                                 334444555    889999999999998876   56


Q ss_pred             HHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHh----CCChhHHHHHHHHHHHcC
Q 002846          388 ASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN----NGDVDKACSVEEHMLEHG  452 (874)
Q Consensus       388 ~tyn~LI~~~~~----~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k----~G~~~~A~~l~~eM~~~G  452 (874)
                      ..+..|-..|..    .++.++|...|++..+.+-   ...+..+-..|.+    .++.++|.+.|+...+.|
T Consensus       183 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          183 PGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             HHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence            788889999999    9999999999999888753   4566667777888    899999999999988765

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=98.30  E-value=2e-05  Score=75.65  Aligned_cols=156  Identities=15%  Similarity=0.059  Sum_probs=123.3

Q ss_pred             hhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHH
Q 002846          294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE  373 (874)
Q Consensus       294 ~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~  373 (874)
                      +...|++++|...|+++....  |+                     +...+           ..+...+...|++++|.+
T Consensus        18 ~~~~~~~~~A~~~~~~~~~~~--~~---------------------~~~~~-----------~~~~~~~~~~~~~~~A~~   63 (186)
T 3as5_A           18 HAKAGRYSQAVMLLEQVYDAD--AF---------------------DVDVA-----------LHLGIAYVKTGAVDRGTE   63 (186)
T ss_dssp             HHHHTCHHHHHHHHTTTCCTT--SC---------------------CHHHH-----------HHHHHHHHHTTCHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHhC--cc---------------------ChHHH-----------HHHHHHHHHcCCHHHHHH
Confidence            667788888888777664431  21                     11222           666778889999999999


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 002846          374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGV  453 (874)
Q Consensus       374 lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv  453 (874)
                      +|+++.... +.+..++..+...+...|++++|.++++++.... ..+...+..+...|...|+.++|..+++...... 
T Consensus        64 ~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-  140 (186)
T 3as5_A           64 LLERSLADA-PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-  140 (186)
T ss_dssp             HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-
Confidence            999988753 3467888999999999999999999999987762 3456777778888999999999999999988764 


Q ss_pred             CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          454 YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       454 ~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      ..+...+..+...+...|+.++|...+.+....
T Consensus       141 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  173 (186)
T 3as5_A          141 PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL  173 (186)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            345788888999999999999999999887664

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.28  E-value=1.7e-05  Score=71.52  Aligned_cols=128  Identities=16%  Similarity=0.121  Sum_probs=109.9

Q ss_pred             chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhC
Q 002846          356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN  435 (874)
Q Consensus       356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~  435 (874)
                      ..+...+...|++++|..+|+++.... +.+..++..+...+...|++++|..+++++...+ ..+...+..+...+...
T Consensus         5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~   82 (136)
T 2fo7_A            5 YNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ   82 (136)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHh
Confidence            566778889999999999999998754 3467889999999999999999999999988763 23566788888999999


Q ss_pred             CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       436 G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      |++++|..+++.+.... ..+...+..+...+.+.|+.++|...|.++...
T Consensus        83 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           83 GDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            99999999999998754 235778889999999999999999999998765

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.27  E-value=6.3e-06  Score=86.90  Aligned_cols=274  Identities=11%  Similarity=-0.038  Sum_probs=185.0

Q ss_pred             HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHH
Q 002846          159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSE--QFQLRVELDMCSKRGDVMGAIRLYDKAQRE----GIKLG-QYHYNV  231 (874)
Q Consensus       159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd--~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~----Gi~pd-~~tyn~  231 (874)
                      .....++.++|...|++.....  ++   .|.  ...|..+-..+...|++++|+..|++....    +-.|. ...+..
T Consensus        14 ~~~~~g~~~~A~~~~~~al~~~--~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~   88 (338)
T 3ro2_A           14 RLCKSGDCRAGVSFFEAAVQVG--TE---DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN   88 (338)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC--CS---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHhhC--cc---cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence            5567899999999999986642  11   111  357888889999999999999999987632    22222 345555


Q ss_pred             HHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCC--chhhhHhhhcCcccChhhhhcCC----------
Q 002846          232 LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYR----------  299 (874)
Q Consensus       232 LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~--d~vtyn~LI~~~~~~~~~~~~g~----------  299 (874)
                      +-..+.          ..|+.++|...+.-.    .++....+-.  ...+|..+-..      +...|+          
T Consensus        89 l~~~~~----------~~g~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~  148 (338)
T 3ro2_A           89 LGNTLK----------VLGNFDEAIVCCQRH----LDISRELNDKVGEARALYNLGNV------YHAKGKSFGCPGPQDT  148 (338)
T ss_dssp             HHHHHH----------HTTCHHHHHHHHHHH----HHHHHHTTCHHHHHHHHHHHHHH------HHHHHHTSSSSSCC--
T ss_pred             HHHHHH----------HccCHHHHHHHHHHH----HHHHHHhcCchHHHHHHHHHHHH------HHHcCcccccchhhhh
Confidence            556666          779999999998511    1121111111  12246666666      777788          


Q ss_pred             ----------hHHHHHHHHHHHHcCCC-CCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCH
Q 002846          300 ----------FDDLDSTFNEKENLGQF-SNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAF  368 (874)
Q Consensus       300 ----------~e~A~~lf~eM~~~Gi~-Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~  368 (874)
                                +++|...+.+....--. ++.       ...           ...+           ..+-..+...|++
T Consensus       149 ~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~-------~~~-----------~~~~-----------~~l~~~~~~~~~~  199 (338)
T 3ro2_A          149 GEFPEDVRNALQAAVDLYEENLSLVTALGDR-------AAQ-----------GRAF-----------GNLGNTHYLLGNF  199 (338)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHTCH-------HHH-----------HHHH-----------HHHHHHHHHHTCH
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHhcCCH-------HHH-----------HHHH-----------HHHHHHHHHhCCH
Confidence                      78888777765432000 000       000           1122           5566778889999


Q ss_pred             HHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----cccHHHHHHHHHhCCCh
Q 002846          369 QRGFEIYEKMCLD----EVP-MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI-NPR----LRSYGPALSVFCNNGDV  438 (874)
Q Consensus       369 ~~A~~lf~~M~~~----Gv~-Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi-~Pd----~~tYn~LI~a~~k~G~~  438 (874)
                      ++|.+.|++....    +-. ....++..+...+...|++++|...+++.....- .++    ..++..+-..|...|+.
T Consensus       200 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~  279 (338)
T 3ro2_A          200 RDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY  279 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCH
Confidence            9999999887642    111 1134788899999999999999999988764310 011    45677788889999999


Q ss_pred             hHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          439 DKACSVEEHMLEH----GVY-PEEPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       439 ~~A~~l~~eM~~~----Gv~-Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      ++|...++.....    +-. ....++..|-..|.+.|+.++|...+++....
T Consensus       280 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  332 (338)
T 3ro2_A          280 EKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  332 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            9999999887643    111 11446778888899999999999999988765

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.26  E-value=0.00012  Score=84.69  Aligned_cols=302  Identities=10%  Similarity=-0.023  Sum_probs=182.7

Q ss_pred             HhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Q 002846          161 EQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAA  240 (874)
Q Consensus       161 ~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~  240 (874)
                      .+.++...|..+|+.+...       .+-+...|...+..+.+.|++++|..+|+++....  |+...|...+.....  
T Consensus        23 ~~~~~~~~a~~~~e~al~~-------~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~--   91 (530)
T 2ooe_A           23 AQNQPIDKARKTYERLVAQ-------FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRE--   91 (530)
T ss_dssp             HHSSCHHHHHHHHHHHHTT-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHH--
T ss_pred             HHhCCHHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHH--
Confidence            4678999999999999542       22345789999999999999999999999998653  787777766653321  


Q ss_pred             cCCCcccCCCCHHHHHH----HHhhcccCchhhhhcCCCC--chhhhHhhhcC---cccChhhhhcCChHHHHHHHHHHH
Q 002846          241 VGVVKPAKSGSGMRTLD----TFEVSTMNSTELGDSRDMD--NNGQLDYGSSP---MIDKLESNSSYRFDDLDSTFNEKE  311 (874)
Q Consensus       241 ~~~~~~~k~G~~~~A~~----vf~v~~~~s~em~~~~gi~--d~vtyn~LI~~---~~~~~~~~~~g~~e~A~~lf~eM~  311 (874)
                             ..|+.+.|.+    +|.       ......|..  +...|...+.-   ......+...|+++.|..+|++..
T Consensus        92 -------~~~~~~~a~~~~~~~~~-------~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al  157 (530)
T 2ooe_A           92 -------TKGKLPSYKEKMAQAYD-------FALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC  157 (530)
T ss_dssp             -------HTTTSTTHHHHHHHHHH-------HHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred             -------HccchhhHHHHHHHHHH-------HHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence                   2344444443    443       222222332  33345544433   000000123567777777777766


Q ss_pred             HcCCCCCe---eeec---------------------cccHHHHHHhhhc--------------CCCCc--------cccc
Q 002846          312 NLGQFSNG---HMKL---------------------NSQLLDGRSNLER--------------GPDDQ--------SRKK  345 (874)
Q Consensus       312 ~~Gi~Pd~---~ty~---------------------~g~~~eA~~l~~~--------------m~pd~--------~ty~  345 (874)
                      ..   |+.   ..|.                     .++..+|..++.+              +.|+.        ..|.
T Consensus       158 ~~---P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~  234 (530)
T 2ooe_A          158 VN---PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWK  234 (530)
T ss_dssp             TS---CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHH
T ss_pred             hc---hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHH
Confidence            52   321   1111                     1122233322221              01110        0110


Q ss_pred             cc---cccc----CC---------------------cc---chHHHHHHh-------cCCHH-------HHHHHHHHHHH
Q 002846          346 DW---SIDN----QD---------------------AD---EIRLSEDAK-------KYAFQ-------RGFEIYEKMCL  380 (874)
Q Consensus       346 ~w---~i~~----~~---------------------~~---n~lI~~~~k-------~g~~~-------~A~~lf~~M~~  380 (874)
                      .|   ....    +.                     ..   ......+.+       .|+++       +|..+|++-..
T Consensus       235 ~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~  314 (530)
T 2ooe_A          235 KYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS  314 (530)
T ss_dssp             HHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHH
Confidence            00   0000    00                     00   112222332       58876       89999998875


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc--ccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-H
Q 002846          381 DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL--RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-E  457 (874)
Q Consensus       381 ~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~--~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd-~  457 (874)
                      .-.+-+...|..++..+.+.|++++|..+|++..+.  .|+.  ..|..+...+.+.|+.++|.++|+...+..  |+ .
T Consensus       315 ~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--~~~~  390 (530)
T 2ooe_A          315 TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRH  390 (530)
T ss_dssp             TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--TCCT
T ss_pred             HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--CCch
Confidence            323346889999999999999999999999999875  5653  478888888889999999999999988753  32 2


Q ss_pred             HHHH--HHHHHHHhcCCchHHHHHHHHHHhcCCCC-ChhHHHH
Q 002846          458 PELE--ALLRVSVEAGKGDRVYYLLHKLRTSVRKV-SPSTADV  497 (874)
Q Consensus       458 ~ty~--~LI~~~~~~G~~d~A~~ll~~M~~~~~~~-sp~T~~~  497 (874)
                      ..|.  +++. +...|+.++|..+|++..+.  .| .+..+..
T Consensus       391 ~~~~~~a~~~-~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~  430 (530)
T 2ooe_A          391 HVYVTAALME-YYCSKDKSVAFKIFELGLKK--YGDIPEYVLA  430 (530)
T ss_dssp             HHHHHHHHHH-HHHTCCHHHHHHHHHHHHHH--HTTCHHHHHH
T ss_pred             HHHHHHHHHH-HHHcCChhHHHHHHHHHHHH--CCCCHHHHHH
Confidence            2232  2222 23589999999999988776  34 3445544

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.24  E-value=7e-05  Score=80.39  Aligned_cols=219  Identities=10%  Similarity=-0.047  Sum_probs=161.1

Q ss_pred             hHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHH-------HcCCH-------HHHHHHHHHHHHcCCCC-CHHHHHH
Q 002846          167 SGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCS-------KRGDV-------MGAIRLYDKAQREGIKL-GQYHYNV  231 (874)
Q Consensus       167 ~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~-------k~G~~-------~~Al~lf~~M~~~Gi~p-d~~tyn~  231 (874)
                      ..|..+|+......       +-+...|..+...+.       +.|++       ++|..+|++.... +.| +...|..
T Consensus        33 ~~a~~~~~~al~~~-------p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~  104 (308)
T 2ond_A           33 KRVMFAYEQCLLVL-------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFA  104 (308)
T ss_dssp             HHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHH
Confidence            57888888875421       123467777776665       45886       8999999999863 245 4557888


Q ss_pred             HHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCch-hhhHhhhcCcccChhhhhcCChHHHHHHHHHH
Q 002846          232 LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNN-GQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK  310 (874)
Q Consensus       232 LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~-vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM  310 (874)
                      +...+.          +.|++++|..+|.       ..... .-.+. ..|..+...      +.+.|++++|..+|++.
T Consensus       105 ~~~~~~----------~~~~~~~A~~~~~-------~al~~-~p~~~~~~~~~~~~~------~~~~~~~~~A~~~~~~a  160 (308)
T 2ond_A          105 YADYEE----------SRMKYEKVHSIYN-------RLLAI-EDIDPTLVYIQYMKF------ARRAEGIKSGRMIFKKA  160 (308)
T ss_dssp             HHHHHH----------HTTCHHHHHHHHH-------HHHTS-SSSCTHHHHHHHHHH------HHHHHCHHHHHHHHHHH
T ss_pred             HHHHHH----------hcCCHHHHHHHHH-------HHHhc-cccCccHHHHHHHHH------HHHhcCHHHHHHHHHHH
Confidence            888888          7799999999995       43332 11133 378888888      88999999999999988


Q ss_pred             HHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 002846          311 ENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSE-DAKKYAFQRGFEIYEKMCLDEVPMNEAS  389 (874)
Q Consensus       311 ~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~-~~k~g~~~~A~~lf~~M~~~Gv~Pd~~t  389 (874)
                      ....  |+....                     |           ...... +...|+.++|..+|+...+.. +-+...
T Consensus       161 ~~~~--p~~~~~---------------------~-----------~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~  205 (308)
T 2ond_A          161 REDA--RTRHHV---------------------Y-----------VTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEY  205 (308)
T ss_dssp             HTST--TCCTHH---------------------H-----------HHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHH
T ss_pred             HhcC--CCCHHH---------------------H-----------HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHH
Confidence            7753  221100                     1           111111 123699999999999887642 236788


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCC--cccHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 002846          390 LTAVGRMAMSMGDGDMAFDMVKRMKSLG-INPR--LRSYGPALSVFCNNGDVDKACSVEEHMLEHG  452 (874)
Q Consensus       390 yn~LI~~~~~~G~~d~A~~l~~~M~~~G-i~Pd--~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~G  452 (874)
                      |..++..+.+.|++++|..+|++..... +.|+  ...|..++..+.+.|+.+.|..+++.+.+..
T Consensus       206 ~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~  271 (308)
T 2ond_A          206 VLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF  271 (308)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence            9999999999999999999999999873 5553  5578888898999999999999999988743

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.22  E-value=9e-06  Score=88.97  Aligned_cols=266  Identities=12%  Similarity=0.034  Sum_probs=182.7

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcc
Q 002846          188 RSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG----QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVST  263 (874)
Q Consensus       188 ~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd----~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~  263 (874)
                      .+....+..+=..+.+.|++++|+.+|+++.+.+- .+    ...|..+-..+.          ..|++++|...+.-. 
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~----------~~g~~~~A~~~~~~a-   73 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYF----------YLHDYAKALEYHHHD-   73 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHH----------HTTCHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHH----------HhcCHHHHHHHHHHH-
Confidence            34456666777788999999999999999987631 23    245666666666          779999999998511 


Q ss_pred             cCchhhhhcCCCC--chhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCC-CC----eeeec--------ccc--
Q 002846          264 MNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQF-SN----GHMKL--------NSQ--  326 (874)
Q Consensus       264 ~~s~em~~~~gi~--d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~-Pd----~~ty~--------~g~--  326 (874)
                         -++....+-.  ....|..+-..      +...|++++|...|.+.....-. ++    ...+.        .|+  
T Consensus        74 ---l~~~~~~~~~~~~~~~~~~la~~------~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  144 (406)
T 3sf4_A           74 ---LTLARTIGDQLGEAKASGNLGNT------LKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSF  144 (406)
T ss_dssp             ---HHHHHHTTCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             ---HHHHHhccccHHHHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcc
Confidence               1122211111  23447777777      88999999999999877653110 11    11121        667  


Q ss_pred             ------------------HHHHHHhhhcC------CCC----cccccccccccCCccchHHHHHHhcCCHHHHHHHHHHH
Q 002846          327 ------------------LLDGRSNLERG------PDD----QSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKM  378 (874)
Q Consensus       327 ------------------~~eA~~l~~~m------~pd----~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M  378 (874)
                                        ..+|...+.+.      .++    ...|           ..+-..|...|++++|.+.|++.
T Consensus       145 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~-----------~~la~~~~~~g~~~~A~~~~~~a  213 (406)
T 3sf4_A          145 GCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAF-----------GNLGNTHYLLGNFRDAVIAHEQR  213 (406)
T ss_dssp             C-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-----------HHHHHHHHHHTBHHHHHHHHHHH
T ss_pred             cccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHH-----------HHHHHHHHHccCHHHHHHHHHHH
Confidence                              78888777664      111    1233           55667788899999999999887


Q ss_pred             HHCCC-CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC-cccHHHHHHHHHhCCChhHHHHHHHHH
Q 002846          379 CLDEV-PMN----EASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINPR-LRSYGPALSVFCNNGDVDKACSVEEHM  448 (874)
Q Consensus       379 ~~~Gv-~Pd----~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~----Gi~Pd-~~tYn~LI~a~~k~G~~~~A~~l~~eM  448 (874)
                      ....- .++    ..+|..+...|...|++++|...+++....    +-.+. ..+|..+-..|...|++++|...+++.
T Consensus       214 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  293 (406)
T 3sf4_A          214 LLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH  293 (406)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            64210 122    347888999999999999999999887643    11111 457777888899999999999999887


Q ss_pred             HHcCC-CCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 002846          449 LEHGV-YPE----EPELEALLRVSVEAGKGDRVYYLLHKLRT  485 (874)
Q Consensus       449 ~~~Gv-~Pd----~~ty~~LI~~~~~~G~~d~A~~ll~~M~~  485 (874)
                      .+..- ..+    ...+..+-..|...|++++|...+.+...
T Consensus       294 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  335 (406)
T 3sf4_A          294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  335 (406)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            65311 112    55677888888999999999999988654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=98.19  E-value=9.7e-05  Score=82.75  Aligned_cols=231  Identities=8%  Similarity=-0.044  Sum_probs=173.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCC-HHHHHHHHhhcccCchhhh
Q 002846          192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGS-GMRTLDTFEVSTMNSTELG  270 (874)
Q Consensus       192 ~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~-~~~A~~vf~v~~~~s~em~  270 (874)
                      ..|+.+-..+.+.|++++|+..|++..... +-+...|+.+-.++.          ..|+ +++|+..|.       +..
T Consensus        98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~----------~~g~d~~eAl~~~~-------~al  159 (382)
T 2h6f_A           98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLK----------SLQKDLHEEMNYIT-------AII  159 (382)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----------HTTCCHHHHHHHHH-------HHH
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHH----------HcccCHHHHHHHHH-------HHH
Confidence            456666677889999999999999998643 224566777777777          6786 999999995       443


Q ss_pred             hcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccc
Q 002846          271 DSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID  350 (874)
Q Consensus       271 ~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~  350 (874)
                      .. .-.+...|+.+-..      +...|++++|+..|+++....  |+.                     ...|      
T Consensus       160 ~l-~P~~~~a~~~~g~~------~~~~g~~~eAl~~~~kal~ld--P~~---------------------~~a~------  203 (382)
T 2h6f_A          160 EE-QPKNYQVWHHRRVL------VEWLRDPSQELEFIADILNQD--AKN---------------------YHAW------  203 (382)
T ss_dssp             HH-CTTCHHHHHHHHHH------HHHHTCCTTHHHHHHHHHHHC--TTC---------------------HHHH------
T ss_pred             HH-CCCCHHHHHHHHHH------HHHccCHHHHHHHHHHHHHhC--ccC---------------------HHHH------
Confidence            32 33356678887777      888999999999999888762  221                     1222      


Q ss_pred             cCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChhHH-----HHHHHHHHHCCCCCC-cc
Q 002846          351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS-MGDGDMA-----FDMVKRMKSLGINPR-LR  423 (874)
Q Consensus       351 ~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~-~G~~d~A-----~~l~~~M~~~Gi~Pd-~~  423 (874)
                           ..+-..+.+.|++++|++.|+++.... +-+...|+.+-.++.. .|..++|     +..+++....  .|+ ..
T Consensus       204 -----~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--~P~~~~  275 (382)
T 2h6f_A          204 -----QHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNES  275 (382)
T ss_dssp             -----HHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHH
T ss_pred             -----HHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--CCCCHH
Confidence                 555567778899999999999999864 3378899999999999 6666888     4777777664  454 55


Q ss_pred             cHHHHHHHHHhCC--ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---------CchHHHHHHHHH-Hhc
Q 002846          424 SYGPALSVFCNNG--DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAG---------KGDRVYYLLHKL-RTS  486 (874)
Q Consensus       424 tYn~LI~a~~k~G--~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G---------~~d~A~~ll~~M-~~~  486 (874)
                      .|+.+-..|...|  +.++|.+.+.++  ..-..+...+..|...|.+.|         ..++|..+++++ .+.
T Consensus       276 a~~~l~~ll~~~g~~~~~~a~~~~~~~--~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~  348 (382)
T 2h6f_A          276 AWNYLKGILQDRGLSKYPNLLNQLLDL--QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK  348 (382)
T ss_dssp             HHHHHHHHHTTTCGGGCHHHHHHHHHH--TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHccCccchHHHHHHHHHh--ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh
Confidence            7777777788888  689999999888  333446778889999998864         258999999998 443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.15  E-value=8.8e-06  Score=89.93  Aligned_cols=272  Identities=11%  Similarity=-0.051  Sum_probs=185.9

Q ss_pred             HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHH
Q 002846          159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSE--QFQLRVELDMCSKRGDVMGAIRLYDKAQRE----GIKL-GQYHYNV  231 (874)
Q Consensus       159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd--~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~----Gi~p-d~~tyn~  231 (874)
                      .....++.++|...|++.....  ++   .|.  ...|..+-..|...|++++|+..|++....    +-.| ....+..
T Consensus        57 ~~~~~g~~~~A~~~~~~al~~~--~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  131 (411)
T 4a1s_A           57 RLCNAGDCRAGVAFFQAAIQAG--TE---DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN  131 (411)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC--CS---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHhCcHHHHHHHHHHHHHhc--cc---ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence            4567889999999999987642  11   111  146888888999999999999999998742    2112 2345555


Q ss_pred             HHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCC--chhhhHhhhcCcccChhhhhcCC----------
Q 002846          232 LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYR----------  299 (874)
Q Consensus       232 LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~--d~vtyn~LI~~~~~~~~~~~~g~----------  299 (874)
                      +-..|.          ..|+.++|...+.-.    -++....+-.  ...+|..+-..      |...|+          
T Consensus       132 l~~~~~----------~~g~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~~~~~~~~  191 (411)
T 4a1s_A          132 LGNTLK----------VMGRFDEAAICCERH----LTLARQLGDRLSEGRALYNLGNV------YHAKGKHLGQRNPGKF  191 (411)
T ss_dssp             HHHHHH----------HTTCHHHHHHHHHHH----HHHHHHHTCHHHHHHHHHHHHHH------HHHHHHHHHHHSTTCC
T ss_pred             HHHHHH----------HCCCHHHHHHHHHHH----HHHHHHhhchHHHHHHHHHHHHH------HHHcCcccccccchhh
Confidence            555555          779999999998511    0111110111  23346666666      888888          


Q ss_pred             -------hHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCC--C-CcccccccccccCCccchHHHHHHhcCCHH
Q 002846          300 -------FDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGP--D-DQSRKKDWSIDNQDADEIRLSEDAKKYAFQ  369 (874)
Q Consensus       300 -------~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~--p-d~~ty~~w~i~~~~~~n~lI~~~~k~g~~~  369 (874)
                             +++|...+.+....                    .....  + ....|           ..+-..|...|+++
T Consensus       192 ~~~a~~~~~~A~~~~~~al~~--------------------~~~~~~~~~~~~~~-----------~~la~~~~~~g~~~  240 (411)
T 4a1s_A          192 GDDVKEALTRAVEFYQENLKL--------------------MRDLGDRGAQGRAC-----------GNLGNTYYLLGDFQ  240 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHH--------------------HHHHTCHHHHHHHH-----------HHHHHHHHHTTCHH
T ss_pred             hhhhhHHHHHHHHHHHHHHHH--------------------HHHcCCHHHHHHHH-----------HHHHHHHHHcCChH
Confidence                   88888877765432                    11000  0 00122           55667788999999


Q ss_pred             HHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC----C-CCcccHHHHHHHHHhCCChh
Q 002846          370 RGFEIYEKMCLDEV-PMN----EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI----N-PRLRSYGPALSVFCNNGDVD  439 (874)
Q Consensus       370 ~A~~lf~~M~~~Gv-~Pd----~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi----~-Pd~~tYn~LI~a~~k~G~~~  439 (874)
                      +|.+.|++.....- .++    ..+|..+...|...|++++|...+++.....-    . ....+|..+-..|...|+.+
T Consensus       241 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  320 (411)
T 4a1s_A          241 AAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFN  320 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            99999988765310 112    23788999999999999999999988765311    0 11456777888899999999


Q ss_pred             HHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          440 KACSVEEHMLEH----GVY-PEEPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       440 ~A~~l~~eM~~~----Gv~-Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      +|...+++....    +-. .....|..|-..|...|+.++|..+|.+....
T Consensus       321 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  372 (411)
T 4a1s_A          321 TAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL  372 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            999999987653    111 12347778888899999999999999998765

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.10  E-value=3.5e-05  Score=79.32  Aligned_cols=130  Identities=8%  Similarity=-0.120  Sum_probs=83.4

Q ss_pred             chHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-------CCCCC
Q 002846          356 EIRLSEDAKKYAFQRGFEIYEKMCLD------EVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL-------GINPR  421 (874)
Q Consensus       356 n~lI~~~~k~g~~~~A~~lf~~M~~~------Gv~P-d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~-------Gi~Pd  421 (874)
                      ..+-..|...|++++|.++|++....      +-.| ...++..+...|...|++++|..++++..+.       ...+.
T Consensus       131 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~  210 (283)
T 3edt_B          131 NNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGD  210 (283)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSS
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchh
Confidence            55556777888888888888877654      1122 3568889999999999999999999988753       23455


Q ss_pred             cccHHHHHHHHHhCCChhHHHHHHHHHHH---c-C-C-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 002846          422 LRSYGPALSVFCNNGDVDKACSVEEHMLE---H-G-V-YPEEPELEALLRVSVEAGKGDRVYYLLHKLRT  485 (874)
Q Consensus       422 ~~tYn~LI~a~~k~G~~~~A~~l~~eM~~---~-G-v-~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~  485 (874)
                      ...+-..+..+...+........+..+..   . + . ......+..|-..|...|++++|..+|++..+
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          211 NKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             CCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            55554444444444332222222222211   1 1 1 12345678888899999999999999988765

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.10  E-value=3.3e-05  Score=81.10  Aligned_cols=241  Identities=11%  Similarity=0.010  Sum_probs=148.0

Q ss_pred             HHHhcCChhHHHHHHHHHhhCCCCCC-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CC-CCCHHHHH
Q 002846          159 KMEQRTNDSGQYKVRGITDEKGSKKS-KKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQRE------GI-KLGQYHYN  230 (874)
Q Consensus       159 ~~~k~~~~~~A~~vf~eM~~~g~k~~-~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~------Gi-~pd~~tyn  230 (874)
                      .....++.++|..+|+++........ .........+..+-..|...|++++|+.+|+++...      +- ......|.
T Consensus        36 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  115 (311)
T 3nf1_A           36 QYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLN  115 (311)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            45577899999999999865211000 001123367888889999999999999999998853      22 22345677


Q ss_pred             HHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhc------CCCC-chhhhHhhhcCcccChhhhhcCChHHH
Q 002846          231 VLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS------RDMD-NNGQLDYGSSPMIDKLESNSSYRFDDL  303 (874)
Q Consensus       231 ~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~------~gi~-d~vtyn~LI~~~~~~~~~~~~g~~e~A  303 (874)
                      .+-..+.          ..|+.++|...|.       +....      ..-+ ....|..+-..      +...|++++|
T Consensus       116 ~l~~~~~----------~~g~~~~A~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~la~~------~~~~~~~~~A  172 (311)
T 3nf1_A          116 NLAVLYG----------KRGKYKEAEPLCK-------RALEIREKVLGKDHPDVAKQLNNLALL------CQNQGKYEEV  172 (311)
T ss_dssp             HHHHHHH----------TTTCHHHHHHHHH-------HHHHHHHHHHCTTCHHHHHHHHHHHHH------HHTTTCHHHH
T ss_pred             HHHHHHH----------HcCcHHHHHHHHH-------HHHHHHHHhcCCCChHHHHHHHHHHHH------HHHcCCHHHH
Confidence            7777777          8899999999995       22221      0111 34457777777      8999999999


Q ss_pred             HHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcC-CCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHC-
Q 002846          304 DSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERG-PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD-  381 (874)
Q Consensus       304 ~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m-~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~-  381 (874)
                      ...|++....-                    ... .++....       ......+...|.+.|++++|.++|+++... 
T Consensus       173 ~~~~~~a~~~~--------------------~~~~~~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  225 (311)
T 3nf1_A          173 EYYYQRALEIY--------------------QTKLGPDDPNV-------AKTKNNLASCYLKQGKFKQAETLYKEILTRA  225 (311)
T ss_dssp             HHHHHHHHHHH--------------------HHTSCTTCHHH-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH--------------------HHHhCCCCHHH-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            99999876541                    111 0000000       012234557788899999999999998853 


Q ss_pred             ------CCCCC-------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHH
Q 002846          382 ------EVPMN-------EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM  448 (874)
Q Consensus       382 ------Gv~Pd-------~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM  448 (874)
                            ...+.       ...+..+...+...+.+.+|...++..... -..+..+|..+-..|.+.|+.++|.++|+..
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  304 (311)
T 3nf1_A          226 HEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAA  304 (311)
T ss_dssp             HHHHHC------CCHHHHHHHHHHC-------CCSCCCC----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence                  11121       223333444444556666666666665543 1234567888889999999999999999887


Q ss_pred             HH
Q 002846          449 LE  450 (874)
Q Consensus       449 ~~  450 (874)
                      .+
T Consensus       305 l~  306 (311)
T 3nf1_A          305 MR  306 (311)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=98.09  E-value=9.9e-05  Score=70.67  Aligned_cols=154  Identities=12%  Similarity=-0.003  Sum_probs=122.4

Q ss_pred             CCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccH
Q 002846          248 KSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQL  327 (874)
Q Consensus       248 k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~  327 (874)
                      ..|+.++|...|.       ++... .-.+...|..+...      +...|++++|...++++....  |+.        
T Consensus        20 ~~~~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~~------~~~~~~~~~A~~~~~~~~~~~--~~~--------   75 (186)
T 3as5_A           20 KAGRYSQAVMLLE-------QVYDA-DAFDVDVALHLGIA------YVKTGAVDRGTELLERSLADA--PDN--------   75 (186)
T ss_dssp             HHTCHHHHHHHHT-------TTCCT-TSCCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHC--TTC--------
T ss_pred             HhcCHHHHHHHHH-------HHHHh-CccChHHHHHHHHH------HHHcCCHHHHHHHHHHHHhcC--CCC--------
Confidence            6789999999995       33322 22255667778778      899999999999999987762  221        


Q ss_pred             HHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 002846          328 LDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAF  407 (874)
Q Consensus       328 ~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~  407 (874)
                                   ...|           ..+...+...|++++|.++|+++.... +.+...+..+...+...|++++|.
T Consensus        76 -------------~~~~-----------~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~  130 (186)
T 3as5_A           76 -------------VKVA-----------TVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAI  130 (186)
T ss_dssp             -------------HHHH-----------HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             -------------HHHH-----------HHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHH
Confidence                         1112           666778889999999999999988763 457888999999999999999999


Q ss_pred             HHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 002846          408 DMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH  451 (874)
Q Consensus       408 ~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~  451 (874)
                      ..+++..... ..+...|..+...|...|+.++|...++...+.
T Consensus       131 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  173 (186)
T 3as5_A          131 DSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL  173 (186)
T ss_dssp             HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            9999988763 345678888899999999999999999987653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.08  E-value=0.00022  Score=89.95  Aligned_cols=242  Identities=10%  Similarity=0.108  Sum_probs=165.7

Q ss_pred             HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 002846          159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS  238 (874)
Q Consensus       159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~  238 (874)
                      .+...+..++|..+|+.-.          .++ ...+.+|.   ..|++++|.+++++..      +..+|..+=.++- 
T Consensus      1058 Iai~lglyEEAf~IYkKa~----------~~~-~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql- 1116 (1630)
T 1xi4_A         1058 IAISNELFEEAFAIFRKFD----------VNT-SAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQL- 1116 (1630)
T ss_pred             HHHhCCCHHHHHHHHHHcC----------CHH-HHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHH-
Confidence            3456778888999988861          011 23344443   6678888888888652      3567777777777 


Q ss_pred             cccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCC
Q 002846          239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN  318 (874)
Q Consensus       239 ~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd  318 (874)
                               +.|++++|.+.|.             .-.|.-.|.-++..      +.+.|++++|.+.|..-....  ++
T Consensus      1117 ---------~~G~~kEAIdsYi-------------KAdD~say~eVa~~------~~~lGkyEEAIeyL~mArk~~--~e 1166 (1630)
T 1xi4_A         1117 ---------QKGMVKEAIDSYI-------------KADDPSSYMEVVQA------ANTSGNWEELVKYLQMARKKA--RE 1166 (1630)
T ss_pred             ---------hCCCHHHHHHHHH-------------hcCChHHHHHHHHH------HHHcCCHHHHHHHHHHHHhhc--cc
Confidence                     7899999999984             12245557778888      999999999999888655443  33


Q ss_pred             e-------eeec-cccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 002846          319 G-------HMKL-NSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASL  390 (874)
Q Consensus       319 ~-------~ty~-~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~ty  390 (874)
                      .       ..|. .+++++...++.  .++...|           ..+=..|...|++++|..+|...         ..|
T Consensus      1167 ~~Idt~LafaYAKl~rleele~fI~--~~n~ad~-----------~~iGd~le~eg~YeeA~~~Y~kA---------~ny 1224 (1630)
T 1xi4_A         1167 SYVETELIFALAKTNRLAELEEFIN--GPNNAHI-----------QQVGDRCYDEKMYDAAKLLYNNV---------SNF 1224 (1630)
T ss_pred             ccccHHHHHHHHhhcCHHHHHHHHh--CCCHHHH-----------HHHHHHHHhcCCHHHHHHHHHhh---------hHH
Confidence            3       2222 344443222221  3344444           44556666778888888888773         478


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 002846          391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA  470 (874)
Q Consensus       391 n~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~  470 (874)
                      ..+...|++.|++++|.+.+++-      -+..+|.-+-.+|...|++..|......     +.-+...+..++..|.+.
T Consensus      1225 ~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~ 1293 (1630)
T 1xi4_A         1225 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDR 1293 (1630)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHc
Confidence            88888888888888888888654      3557777777777778887777776554     335667778999999999


Q ss_pred             CCchHHHHHHHHHH
Q 002846          471 GKGDRVYYLLHKLR  484 (874)
Q Consensus       471 G~~d~A~~ll~~M~  484 (874)
                      |.+++|..+|+.-.
T Consensus      1294 G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A         1294 GYFEELITMLEAAL 1307 (1630)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999996544

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.06  E-value=0.0013  Score=75.32  Aligned_cols=113  Identities=12%  Similarity=0.068  Sum_probs=78.3

Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCC---
Q 002846          365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM-----GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG---  436 (874)
Q Consensus       365 ~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~-----G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G---  436 (874)
                      .++.++|++.|+...+.|   +...+..|-..|...     ++.++|...|++..+.|.   ...+..|-..|...|   
T Consensus       272 ~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~y~~~g~~~  345 (490)
T 2xm6_A          272 AKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGD---ATAQANLGAIYFRLGSEE  345 (490)
T ss_dssp             SCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHSCCHH
T ss_pred             CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCcc
Confidence            677888888888777665   455666677777766     788888888877777642   334444555555545   


Q ss_pred             ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCchHHHHHHHHHHhc
Q 002846          437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVE----AGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       437 ~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~----~G~~d~A~~ll~~M~~~  486 (874)
                      +.++|.+.|+...+.|   +...+..|-..|..    .++.++|...|.+..+.
T Consensus       346 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~  396 (490)
T 2xm6_A          346 EHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ  396 (490)
T ss_dssp             HHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence            6777888887777754   56666666666666    67778888888777765

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.04  E-value=3.3e-05  Score=85.31  Aligned_cols=246  Identities=13%  Similarity=0.046  Sum_probs=167.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCch
Q 002846          192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ----YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNST  267 (874)
Q Consensus       192 ~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~----~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~  267 (874)
                      ..+..+-..+...|++++|+.+|+++.+.+-. +.    ..|..+-..|.          ..|+.++|...+.-.    -
T Consensus        49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~----------~~g~~~~A~~~~~~a----l  113 (411)
T 4a1s_A           49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYF----------YLGDYNKAMQYHKHD----L  113 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHH----------HHTCHHHHHHHHHHH----H
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHH----------HCCCHHHHHHHHHHH----H
Confidence            34445556788999999999999999976322 23    35666666666          679999999998511    1


Q ss_pred             hhhhcCCCC--chhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCccccc
Q 002846          268 ELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKK  345 (874)
Q Consensus       268 em~~~~gi~--d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~  345 (874)
                      ++....+-.  ....|..+-..      |...|++++|...|.+.....-..+      .....+           ..| 
T Consensus       114 ~~~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~~-----------~~~-  169 (411)
T 4a1s_A          114 TLAKSMNDRLGEAKSSGNLGNT------LKVMGRFDEAAICCERHLTLARQLG------DRLSEG-----------RAL-  169 (411)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHHT------CHHHHH-----------HHH-
T ss_pred             HHHHHccCchHHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHHHHHhh------chHHHH-----------HHH-
Confidence            111111111  23457777777      8999999999999988765310000      000011           112 


Q ss_pred             ccccccCCccchHHHHHHhcCC-----------------HHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCh
Q 002846          346 DWSIDNQDADEIRLSEDAKKYA-----------------FQRGFEIYEKMCLD----EVPM-NEASLTAVGRMAMSMGDG  403 (874)
Q Consensus       346 ~w~i~~~~~~n~lI~~~~k~g~-----------------~~~A~~lf~~M~~~----Gv~P-d~~tyn~LI~~~~~~G~~  403 (874)
                                ..+-..|...|+                 +++|.+.|++....    +-.+ ...++..+...|...|++
T Consensus       170 ----------~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~  239 (411)
T 4a1s_A          170 ----------YNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDF  239 (411)
T ss_dssp             ----------HHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             ----------HHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCh
Confidence                      556667778888                 89999988775531    2111 235788899999999999


Q ss_pred             hHHHHHHHHHHHCCCC-CC----cccHHHHHHHHHhCCChhHHHHHHHHHHHcCC----C-CCHHHHHHHHHHHHhcCCc
Q 002846          404 DMAFDMVKRMKSLGIN-PR----LRSYGPALSVFCNNGDVDKACSVEEHMLEHGV----Y-PEEPELEALLRVSVEAGKG  473 (874)
Q Consensus       404 d~A~~l~~~M~~~Gi~-Pd----~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv----~-Pd~~ty~~LI~~~~~~G~~  473 (874)
                      ++|...+++..+..-. ++    ...|..+-..|...|++++|...+++.....-    . .....+..+-..|...|++
T Consensus       240 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~  319 (411)
T 4a1s_A          240 QAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEF  319 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH
Confidence            9999999987654110 11    23677888899999999999999988765311    0 1246778888889999999


Q ss_pred             hHHHHHHHHHHhc
Q 002846          474 DRVYYLLHKLRTS  486 (874)
Q Consensus       474 d~A~~ll~~M~~~  486 (874)
                      ++|..+|++....
T Consensus       320 ~~A~~~~~~al~~  332 (411)
T 4a1s_A          320 NTAIEYHNRHLAI  332 (411)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999987653

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.03  E-value=0.0033  Score=71.84  Aligned_cols=245  Identities=8%  Similarity=-0.019  Sum_probs=157.8

Q ss_pred             cCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 002846          163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSK----RGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS  238 (874)
Q Consensus       163 ~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k----~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~  238 (874)
                      .++..+|.+.|+...+.|         +...+..|=..|..    .+++++|+..|++..+.|   +...+..|=..|..
T Consensus        92 ~~~~~~A~~~~~~a~~~~---------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~  159 (490)
T 2xm6_A           92 PQDYAQAVIWYKKAALKG---------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFE  159 (490)
T ss_dssp             CCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence            456677777777765432         22444445555655    667777877777777665   34445444444442


Q ss_pred             cccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhh----cCChHHHHHHHHHHHHcC
Q 002846          239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNS----SYRFDDLDSTFNEKENLG  314 (874)
Q Consensus       239 ~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~----~g~~e~A~~lf~eM~~~G  314 (874)
                      ..      .-.++.++|...|.       ...+. |  +...+..|-..      |..    .++.++|...|.+-.+.|
T Consensus       160 g~------g~~~d~~~A~~~~~-------~a~~~-~--~~~a~~~Lg~~------y~~g~g~~~~~~~A~~~~~~a~~~~  217 (490)
T 2xm6_A          160 GD------GVTRDYVMAREWYS-------KAAEQ-G--NVWSCNQLGYM------YSRGLGVERNDAISAQWYRKSATSG  217 (490)
T ss_dssp             TS------SSCCCHHHHHHHHH-------HHHHT-T--CHHHHHHHHHH------HHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             CC------CCCCCHHHHHHHHH-------HHHHC-C--CHHHHHHHHHH------HhcCCCCCcCHHHHHHHHHHHHHCC
Confidence            11      02466777777774       22222 1  23333333333      333    567777777777666654


Q ss_pred             CCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 002846          315 QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAK----KYAFQRGFEIYEKMCLDEVPMNEASL  390 (874)
Q Consensus       315 i~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k----~g~~~~A~~lf~~M~~~Gv~Pd~~ty  390 (874)
                      .   ...                      +           ..+-..|..    .++.++|.++|++..+.|   +...+
T Consensus       218 ~---~~a----------------------~-----------~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~  258 (490)
T 2xm6_A          218 D---ELG----------------------Q-----------LHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ  258 (490)
T ss_dssp             C---HHH----------------------H-----------HHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred             C---HHH----------------------H-----------HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence            1   111                      1           344444544    789999999999988775   56677


Q ss_pred             HHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhC-----CChhHHHHHHHHHHHcCCCCCHHHHH
Q 002846          391 TAVGRMAMS----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN-----GDVDKACSVEEHMLEHGVYPEEPELE  461 (874)
Q Consensus       391 n~LI~~~~~----~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~-----G~~~~A~~l~~eM~~~Gv~Pd~~ty~  461 (874)
                      ..|-..|..    .++.++|...|++..+.|   +...+..|-..|...     ++.++|...|+...+.|   +...+.
T Consensus       259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~  332 (490)
T 2xm6_A          259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQA  332 (490)
T ss_dssp             HHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             HHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHH
Confidence            777777877    899999999999887765   334555566666666     89999999999988875   455666


Q ss_pred             HHHHHHHhcC---CchHHHHHHHHHHhc
Q 002846          462 ALLRVSVEAG---KGDRVYYLLHKLRTS  486 (874)
Q Consensus       462 ~LI~~~~~~G---~~d~A~~ll~~M~~~  486 (874)
                      .|-..|...|   +.++|..+|.+..+.
T Consensus       333 ~lg~~y~~~g~~~~~~~A~~~~~~a~~~  360 (490)
T 2xm6_A          333 NLGAIYFRLGSEEEHKKAVEWFRKAAAK  360 (490)
T ss_dssp             HHHHHHHHSCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCcccHHHHHHHHHHHHHC
Confidence            6666676656   678899999888776

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=98.03  E-value=0.00016  Score=74.70  Aligned_cols=189  Identities=11%  Similarity=0.006  Sum_probs=116.4

Q ss_pred             CCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccH
Q 002846          248 KSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQL  327 (874)
Q Consensus       248 k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~  327 (874)
                      ..|++++|...|.       +..+. .-.+...|..+-..      +...|++++|...|++....+-.|+....     
T Consensus        15 ~~~~~~~A~~~~~-------~~l~~-~p~~~~~~~~l~~~------~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-----   75 (272)
T 3u4t_A           15 KNNNYAEAIEVFN-------KLEAK-KYNSPYIYNRRAVC------YYELAKYDLAQKDIETYFSKVNATKAKSA-----   75 (272)
T ss_dssp             TTTCHHHHHHHHH-------HHHHT-TCCCSTTHHHHHHH------HHHTTCHHHHHHHHHHHHTTSCTTTCCHH-----
T ss_pred             HhcCHHHHHHHHH-------HHHHh-CCCcHHHHHHHHHH------HHHHhhHHHHHHHHHHHHhccCchhHHHH-----
Confidence            5677788888774       33332 22234455555556      77778888888877777664322221110     


Q ss_pred             HHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 002846          328 LDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAF  407 (874)
Q Consensus       328 ~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~  407 (874)
                                     .|           ..+-..+...|++++|.+.|++..... +-+..+|..+...|...|++++|.
T Consensus        76 ---------------~~-----------~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~  128 (272)
T 3u4t_A           76 ---------------DF-----------EYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAI  128 (272)
T ss_dssp             ---------------HH-----------HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred             ---------------HH-----------HHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHH
Confidence                           01           455566777788888888887777643 224567777788888888888888


Q ss_pred             HHHHHHHHCCCCCC-cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCC---chHHHHHHHH
Q 002846          408 DMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGK---GDRVYYLLHK  482 (874)
Q Consensus       408 ~l~~~M~~~Gi~Pd-~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd-~~ty~~LI~~~~~~G~---~d~A~~ll~~  482 (874)
                      ..|++..+.  .|+ ...|..+-..+...+++++|.+.|+...+..  |+ ...+..+-..+...|+   .++|...+.+
T Consensus       129 ~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  204 (272)
T 3u4t_A          129 QYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEK  204 (272)
T ss_dssp             HHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHH
T ss_pred             HHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence            888776554  343 3334333313444557888888887777643  43 5566666666666666   6667777766


Q ss_pred             HHhc
Q 002846          483 LRTS  486 (874)
Q Consensus       483 M~~~  486 (874)
                      ....
T Consensus       205 a~~~  208 (272)
T 3u4t_A          205 LIEV  208 (272)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6553

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.02  E-value=6e-05  Score=67.85  Aligned_cols=122  Identities=16%  Similarity=0.156  Sum_probs=100.6

Q ss_pred             hhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHH
Q 002846          294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE  373 (874)
Q Consensus       294 ~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~  373 (874)
                      +...|++++|..+|.++....- .+...+                                 ..+...+...|++++|..
T Consensus        11 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~---------------------------------~~~a~~~~~~~~~~~A~~   56 (136)
T 2fo7_A           11 YYKQGDYDEAIEYYQKALELDP-RSAEAW---------------------------------YNLGNAYYKQGDYDEAIE   56 (136)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCT-TCHHHH---------------------------------HHHHHHHHHHTCHHHHHH
T ss_pred             HHHcCcHHHHHHHHHHHHHcCC-cchhHH---------------------------------HHHHHHHHHhcCHHHHHH
Confidence            7888999999999999887631 112222                                 666778889999999999


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 002846          374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH  451 (874)
Q Consensus       374 lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~  451 (874)
                      +|+++...+ +.+...+..+...+...|++++|..+++++.... ..+...+..+...|.+.|+.++|...++++...
T Consensus        57 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           57 YYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             HHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHC-CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            999998764 3467789999999999999999999999998763 235677888999999999999999999998764

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=97.99  E-value=7.5e-05  Score=78.52  Aligned_cols=243  Identities=11%  Similarity=0.016  Sum_probs=165.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCch
Q 002846          193 QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG-----QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNST  267 (874)
Q Consensus       193 tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd-----~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~  267 (874)
                      .+...=..+.+.|++++|+.+|+++.+..  |+     ...|..+-..+.          ..|+.++|...+.-.    .
T Consensus         7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~----------~~g~~~~A~~~~~~a----l   70 (338)
T 3ro2_A            7 ELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYF----------YLHDYAKALEYHHHD----L   70 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHH----------HTTCHHHHHHHHHHH----H
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHH----------HcCCHHHHHHHHHHH----H
Confidence            34445567789999999999999998763  33     355666666666          779999999998511    0


Q ss_pred             hhhhcCCCC--chhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCC-CCeeeeccccHHHHHHhhhcCCCCcccc
Q 002846          268 ELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQF-SNGHMKLNSQLLDGRSNLERGPDDQSRK  344 (874)
Q Consensus       268 em~~~~gi~--d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~-Pd~~ty~~g~~~eA~~l~~~m~pd~~ty  344 (874)
                      ++....+-.  ....|..+-..      +...|++++|...|.+.....-. ++.       ...+           .++
T Consensus        71 ~~~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~-----------~~~  126 (338)
T 3ro2_A           71 TLARTIGDQLGEAKASGNLGNT------LKVLGNFDEAIVCCQRHLDISRELNDK-------VGEA-----------RAL  126 (338)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHTTCH-------HHHH-----------HHH
T ss_pred             HHhhcccccHHHHHHHHHHHHH------HHHccCHHHHHHHHHHHHHHHHHhcCc-------hHHH-----------HHH
Confidence            111111111  23457777777      88999999999999876553100 000       0001           112


Q ss_pred             cccccccCCccchHHHHHHhcCC--------------------HHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHh
Q 002846          345 KDWSIDNQDADEIRLSEDAKKYA--------------------FQRGFEIYEKMCLD----EVPM-NEASLTAVGRMAMS  399 (874)
Q Consensus       345 ~~w~i~~~~~~n~lI~~~~k~g~--------------------~~~A~~lf~~M~~~----Gv~P-d~~tyn~LI~~~~~  399 (874)
                                 ..+-..+...|+                    +++|.+.+++....    +-.+ ...++..+...+..
T Consensus       127 -----------~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~  195 (338)
T 3ro2_A          127 -----------YNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYL  195 (338)
T ss_dssp             -----------HHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             -----------HHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence                       555667777788                    89999888776532    2111 24578888999999


Q ss_pred             cCChhHHHHHHHHHHHCCC-CCC----cccHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHh
Q 002846          400 MGDGDMAFDMVKRMKSLGI-NPR----LRSYGPALSVFCNNGDVDKACSVEEHMLEHGV-YPE----EPELEALLRVSVE  469 (874)
Q Consensus       400 ~G~~d~A~~l~~~M~~~Gi-~Pd----~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv-~Pd----~~ty~~LI~~~~~  469 (874)
                      .|++++|...+++..+..- .++    ..++..+-..|...|+.++|...+++.....- ..+    ..++..+-..+..
T Consensus       196 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  275 (338)
T 3ro2_A          196 LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL  275 (338)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Confidence            9999999999998764310 011    23677788889999999999999988764310 112    5567788888999


Q ss_pred             cCCchHHHHHHHHHHhc
Q 002846          470 AGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       470 ~G~~d~A~~ll~~M~~~  486 (874)
                      .|++++|...+.+....
T Consensus       276 ~g~~~~A~~~~~~a~~~  292 (338)
T 3ro2_A          276 LQDYEKAIDYHLKHLAI  292 (338)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHH
Confidence            99999999999887653

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=97.94  E-value=0.00041  Score=67.53  Aligned_cols=165  Identities=12%  Similarity=0.025  Sum_probs=129.1

Q ss_pred             hhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchH
Q 002846          279 GQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIR  358 (874)
Q Consensus       279 vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~l  358 (874)
                      ..|..|=..      +...|++++|...|++..+..  |+..                     ..|           ..+
T Consensus         6 ~iy~~lG~~------~~~~g~~~~A~~~~~~al~~~--p~~~---------------------~~~-----------~~l   45 (184)
T 3vtx_A            6 TIYMDIGDK------KRTKGDFDGAIRAYKKVLKAD--PNNV---------------------ETL-----------LKL   45 (184)
T ss_dssp             HHHHHHHHH------HHHHTCHHHHHHHHHHHHHHC--TTCH---------------------HHH-----------HHH
T ss_pred             HHHHHHHHH------HHHcCCHHHHHHHHHHHHHhC--CCCH---------------------HHH-----------HHH
Confidence            345555555      888999999999999877652  3321                     122           566


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCCh
Q 002846          359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDV  438 (874)
Q Consensus       359 I~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~  438 (874)
                      -..|.+.|++++|...+....... +-+...+..+...+...++++.|...+.+..... +-+...+..+-..|.+.|++
T Consensus        46 a~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~  123 (184)
T 3vtx_A           46 GKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEH  123 (184)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCc
Confidence            677889999999999999887754 3356778888888999999999999999887652 23456777778888899999


Q ss_pred             hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          439 DKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       439 ~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      ++|.+.|+...+.. +-+...|..|-..|.+.|+.++|...|++..+.
T Consensus       124 ~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  170 (184)
T 3vtx_A          124 DKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK  170 (184)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence            99999999988754 235678888989999999999999999988765

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=97.92  E-value=0.0005  Score=79.53  Aligned_cols=269  Identities=10%  Similarity=0.026  Sum_probs=177.1

Q ss_pred             CChhHHHHHHHHHhh--CCCCCCC-CCCCC--------HHHHHHHHHHHHHc----CCH----HHHHHHHHHHHHcCCCC
Q 002846          164 TNDSGQYKVRGITDE--KGSKKSK-KDRSE--------QFQLRVELDMCSKR----GDV----MGAIRLYDKAQREGIKL  224 (874)
Q Consensus       164 ~~~~~A~~vf~eM~~--~g~k~~~-g~~Pd--------~~tyn~LI~a~~k~----G~~----~~Al~lf~~M~~~Gi~p  224 (874)
                      ++...|..++.++..  .+..... .+.|+        ...|...|.-.-..    ++.    .+|+.+|+++... .+-
T Consensus       192 ~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~  270 (530)
T 2ooe_A          192 RDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGH  270 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTT
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCC
Confidence            445667777776321  1222211 12343        35676666544332    233    4788899998864 233


Q ss_pred             CHHHHHHHHHHHHhcccCCCcccCCCCHH-------HHHHHHhhcccCchhhhhcCCCC-chhhhHhhhcCcccChhhhh
Q 002846          225 GQYHYNVLLYLCSSAAVGVVKPAKSGSGM-------RTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNS  296 (874)
Q Consensus       225 d~~tyn~LL~a~~~~~~~~~~~~k~G~~~-------~A~~vf~v~~~~s~em~~~~gi~-d~vtyn~LI~~~~~~~~~~~  296 (874)
                      +...|..+...+......   -...|+++       +|..+|.       ..... -.+ +...|..+...      +.+
T Consensus       271 ~~~~w~~~~~~~~~~~~~---~~~~g~~~~a~~~~~~A~~~~~-------~Al~~-~~p~~~~l~~~~~~~------~~~  333 (530)
T 2ooe_A          271 HPDIWYEAAQYLEQSSKL---LAEKGDMNNAKLFSDEAANIYE-------RAIST-LLKKNMLLYFAYADY------EES  333 (530)
T ss_dssp             CHHHHHHHHHHHHHHHHH---HHTTTCCHHHHHHHHHHHHHHH-------HHTTT-TCSSCHHHHHHHHHH------HHH
T ss_pred             CHHHHHHHHHHHHHhchh---hhhccchhhhhhhhHHHHHHHH-------HHHHH-hCcccHHHHHHHHHH------HHh
Confidence            566777666666521000   00157776       8888885       22221 123 45568888887      888


Q ss_pred             cCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHH
Q 002846          297 SYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYE  376 (874)
Q Consensus       297 ~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~  376 (874)
                      .|++++|..+|++....  .|+..+                    ..|           ..+...+.+.|++++|.++|+
T Consensus       334 ~g~~~~A~~~~~~al~~--~p~~~~--------------------~~~-----------~~~~~~~~~~~~~~~A~~~~~  380 (530)
T 2ooe_A          334 RMKYEKVHSIYNRLLAI--EDIDPT--------------------LVY-----------IQYMKFARRAEGIKSGRMIFK  380 (530)
T ss_dssp             TTCHHHHHHHHHHHHHS--SSSCHH--------------------HHH-----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHhCc--cccCch--------------------HHH-----------HHHHHHHHHhcCHHHHHHHHH
Confidence            99999999999998874  343211                    122           666677778899999999999


Q ss_pred             HHHHCCCCCCHHHHHHHHHH-HHhcCChhHHHHHHHHHHHCCCCC-CcccHHHHHHHHHhCCChhHHHHHHHHHHHcC-C
Q 002846          377 KMCLDEVPMNEASLTAVGRM-AMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHG-V  453 (874)
Q Consensus       377 ~M~~~Gv~Pd~~tyn~LI~~-~~~~G~~d~A~~l~~~M~~~Gi~P-d~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~G-v  453 (874)
                      ...... +.+...|-..... +...|+.++|..+|+...+.  .| +...|..++..+.+.|+.++|..+|+.....+ .
T Consensus       381 ~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~  457 (530)
T 2ooe_A          381 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL  457 (530)
T ss_dssp             HHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCS
T ss_pred             HHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCC
Confidence            988653 1222333222222 34689999999999987765  24 46778888888889999999999999998864 2


Q ss_pred             CCC--HHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          454 YPE--EPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       454 ~Pd--~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      .|+  ...|...+......|+.+.+..++.++.+.
T Consensus       458 ~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~  492 (530)
T 2ooe_A          458 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA  492 (530)
T ss_dssp             CGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            332  558888888888899999999999998876

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=97.92  E-value=7.9e-05  Score=85.62  Aligned_cols=212  Identities=4%  Similarity=-0.135  Sum_probs=159.7

Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCH-HHHHHHHhhcccCchhhhhcCCCCchhhhHhhh
Q 002846          207 VMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSG-MRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGS  285 (874)
Q Consensus       207 ~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~-~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI  285 (874)
                      +++|+..+++..... ..+...|..+=.++.          ..|++ ++|...|.       +..+. .-.+...|..+-
T Consensus        84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~----------~~g~~~~~A~~~~~-------~al~~-~p~~~~a~~~lg  144 (474)
T 4abn_A           84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALN----------VTPDYSPEAEVLLS-------KAVKL-EPELVEAWNQLG  144 (474)
T ss_dssp             HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHT----------SSSSCCHHHHHHHH-------HHHHH-CTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhccC-chhHHHHHHHHHHHH----------hccccHHHHHHHHH-------HHHhh-CCCCHHHHHHHH
Confidence            567777777655322 235566666666666          78999 99999995       33332 222556788888


Q ss_pred             cCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhc
Q 002846          286 SPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKK  365 (874)
Q Consensus       286 ~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~  365 (874)
                      ..      |...|++++|...|++.....  |+...+                                 ..+-..|...
T Consensus       145 ~~------~~~~g~~~~A~~~~~~al~~~--p~~~~~---------------------------------~~lg~~~~~~  183 (474)
T 4abn_A          145 EV------YWKKGDVTSAHTCFSGALTHC--KNKVSL---------------------------------QNLSMVLRQL  183 (474)
T ss_dssp             HH------HHHHTCHHHHHHHHHHHHTTC--CCHHHH---------------------------------HHHHHHHTTC
T ss_pred             HH------HHHcCCHHHHHHHHHHHHhhC--CCHHHH---------------------------------HHHHHHHHHh
Confidence            88      999999999999999988763  553333                                 4455556666


Q ss_pred             ---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CChhHHHHHHHHHHHCCCCC----Cccc
Q 002846          366 ---------YAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM--------GDGDMAFDMVKRMKSLGINP----RLRS  424 (874)
Q Consensus       366 ---------g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~--------G~~d~A~~l~~~M~~~Gi~P----d~~t  424 (874)
                               |++++|.+.|++..+.. +-+...|..+-.+|...        |++++|...|++..+.  .|    +...
T Consensus       184 ~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~  260 (474)
T 4abn_A          184 QTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DRKASSNPDL  260 (474)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGCHHH
T ss_pred             ccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--CCCcccCHHH
Confidence                     89999999999988753 33678899999999988        9999999999998875  35    6778


Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 002846          425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKL  483 (874)
Q Consensus       425 Yn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~P-d~~ty~~LI~~~~~~G~~d~A~~ll~~M  483 (874)
                      |..+-..|...|++++|.+.|++..+..  | +...+..+-..+...|+.++|...+.++
T Consensus       261 ~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          261 HLNRATLHKYEESYGEALEGFSQAAALD--PAWPEPQQREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            8888899999999999999999987753  4 4556777778888888888887765443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=97.83  E-value=0.00012  Score=79.78  Aligned_cols=256  Identities=13%  Similarity=0.001  Sum_probs=174.5

Q ss_pred             HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHH
Q 002846          159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSE--QFQLRVELDMCSKRGDVMGAIRLYDKAQRE----GIKLG-QYHYNV  231 (874)
Q Consensus       159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd--~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~----Gi~pd-~~tyn~  231 (874)
                      .....++..+|...|++.....  ++   .|.  ...|..+-..|...|++++|+..|+++...    +-.|. ...+..
T Consensus        18 ~~~~~g~~~~A~~~~~~al~~~--~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~   92 (406)
T 3sf4_A           18 RLCKSGDCRAGVSFFEAAVQVG--TE---DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN   92 (406)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC--CS---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHhcC--cc---cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence            5667899999999999986642  11   111  256888888999999999999999987632    22222 335555


Q ss_pred             HHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCC--chhhhHhhhcCcccChhhhhcCC----------
Q 002846          232 LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYR----------  299 (874)
Q Consensus       232 LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~--d~vtyn~LI~~~~~~~~~~~~g~----------  299 (874)
                      +-..+.          ..|+.++|...+.-.    -++....+-.  -..+|..+-..      +...|+          
T Consensus        93 la~~~~----------~~g~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~~~~~~~~  152 (406)
T 3sf4_A           93 LGNTLK----------VLGNFDEAIVCCQRH----LDISRELNDKVGEARALYNLGNV------YHAKGKSFGCPGPQDV  152 (406)
T ss_dssp             HHHHHH----------HTTCHHHHHHHHHHH----HHHHHHHTCHHHHHHHHHHHHHH------HHHHHHTCC-------
T ss_pred             HHHHHH----------HcCCHHHHHHHHHHH----HHHHHhcccccchHHHHHHHHHH------HHHcCCcccccccchh
Confidence            555665          779999999988511    0111110111  12356666666      888888          


Q ss_pred             ----------hHHHHHHHHHHHHc----CCCCCe-eeec--------cccHHHHHHhhhcC------CCC----cccccc
Q 002846          300 ----------FDDLDSTFNEKENL----GQFSNG-HMKL--------NSQLLDGRSNLERG------PDD----QSRKKD  346 (874)
Q Consensus       300 ----------~e~A~~lf~eM~~~----Gi~Pd~-~ty~--------~g~~~eA~~l~~~m------~pd----~~ty~~  346 (874)
                                +++|...+.+....    +-.|.. ..|.        .|+.++|...+.+.      .++    ...|  
T Consensus       153 ~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--  230 (406)
T 3sf4_A          153 GEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAY--  230 (406)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHH--
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHH--
Confidence                      99999888876442    111111 1121        78888998888876      222    1244  


Q ss_pred             cccccCCccchHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CC
Q 002846          347 WSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD----EVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI-NP  420 (874)
Q Consensus       347 w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~----Gv~Pd-~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi-~P  420 (874)
                               ..+-..|...|++++|...|++....    +-.+. ..++..+...|...|++++|...+++.....- .+
T Consensus       231 ---------~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  301 (406)
T 3sf4_A          231 ---------SNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN  301 (406)
T ss_dssp             ---------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             ---------HHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC
Confidence                     66677888999999999999887642    21111 56788999999999999999999988765311 11


Q ss_pred             C----cccHHHHHHHHHhCCChhHHHHHHHHHHH
Q 002846          421 R----LRSYGPALSVFCNNGDVDKACSVEEHMLE  450 (874)
Q Consensus       421 d----~~tYn~LI~a~~k~G~~~~A~~l~~eM~~  450 (874)
                      +    ..+|..+-..|...|+.++|.+.+++..+
T Consensus       302 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  335 (406)
T 3sf4_A          302 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  335 (406)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            1    45677788888899999999999988654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=97.82  E-value=0.00075  Score=75.47  Aligned_cols=238  Identities=9%  Similarity=-0.035  Sum_probs=170.5

Q ss_pred             HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 002846          159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGD-VMGAIRLYDKAQREGIKLGQYHYNVLLYLCS  237 (874)
Q Consensus       159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~-~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~  237 (874)
                      .+.+.++.++|+..|+..+...  |     -+...|+.+-..+.+.|+ +++|+..|+++.... +-+...|+.+=.++.
T Consensus       106 ~~~~~g~~~~Al~~~~~al~l~--P-----~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~  177 (382)
T 2h6f_A          106 VLQRDERSERAFKLTRDAIELN--A-----ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVE  177 (382)
T ss_dssp             HHHHTCCCHHHHHHHHHHHHHC--T-----TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHCCChHHHHHHHHHHHHhC--c-----cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence            4567789999999999986531  1     234788888889999996 999999999999754 225567777777777


Q ss_pred             hcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCC
Q 002846          238 SAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS  317 (874)
Q Consensus       238 ~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~P  317 (874)
                                +.|++++|+..|.       ...+. .-.+...|..+-..      +.+.|++++|+..|+++....  |
T Consensus       178 ----------~~g~~~eAl~~~~-------kal~l-dP~~~~a~~~lg~~------~~~~g~~~eAl~~~~~al~l~--P  231 (382)
T 2h6f_A          178 ----------WLRDPSQELEFIA-------DILNQ-DAKNYHAWQHRQWV------IQEFKLWDNELQYVDQLLKED--V  231 (382)
T ss_dssp             ----------HHTCCTTHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHHHTCCTTHHHHHHHHHHHC--T
T ss_pred             ----------HccCHHHHHHHHH-------HHHHh-CccCHHHHHHHHHH------HHHcCChHHHHHHHHHHHHhC--C
Confidence                      6789999999995       44433 33366778888777      889999999999999998863  2


Q ss_pred             CeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHh-cCCHHHH-----HHHHHHHHHCCCCCCHHHHH
Q 002846          318 NGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAK-KYAFQRG-----FEIYEKMCLDEVPMNEASLT  391 (874)
Q Consensus       318 d~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k-~g~~~~A-----~~lf~~M~~~Gv~Pd~~tyn  391 (874)
                      +.                     ...|           +.+-..+.+ .|..++|     ++.|++..... +-+...|+
T Consensus       232 ~~---------------------~~a~-----------~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~  278 (382)
T 2h6f_A          232 RN---------------------NSVW-----------NQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWN  278 (382)
T ss_dssp             TC---------------------HHHH-----------HHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred             CC---------------------HHHH-----------HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHH
Confidence            21                     1122           444455566 5554666     57787777643 23678899


Q ss_pred             HHHHHHHhcC--ChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCC---------ChhHHHHHHHHH-HHcCCCCC-HH
Q 002846          392 AVGRMAMSMG--DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG---------DVDKACSVEEHM-LEHGVYPE-EP  458 (874)
Q Consensus       392 ~LI~~~~~~G--~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G---------~~~~A~~l~~eM-~~~Gv~Pd-~~  458 (874)
                      .+...+...|  +.++|++.+.++ +. -..+...+..+...|.+.|         ..++|.++|+.+ .+.  .|. ..
T Consensus       279 ~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~--DP~r~~  354 (382)
T 2h6f_A          279 YLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK--DTIRKE  354 (382)
T ss_dssp             HHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT--CGGGHH
T ss_pred             HHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh--CchhHH
Confidence            9999999988  689999999887 22 2334567778888888864         358999999998 553  353 34


Q ss_pred             HHHHHHHHH
Q 002846          459 ELEALLRVS  467 (874)
Q Consensus       459 ty~~LI~~~  467 (874)
                      -|..+...+
T Consensus       355 ~w~~~~~~l  363 (382)
T 2h6f_A          355 YWRYIGRSL  363 (382)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            455454444

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=97.81  E-value=0.0021  Score=69.95  Aligned_cols=273  Identities=9%  Similarity=-0.022  Sum_probs=170.6

Q ss_pred             HHhcCChhHHHHHHHHHhhCCCCCCCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHH----HHHHH
Q 002846          160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRS--EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGI-KLGQY----HYNVL  232 (874)
Q Consensus       160 ~~k~~~~~~A~~vf~eM~~~g~k~~~g~~P--d~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi-~pd~~----tyn~L  232 (874)
                      ....++.++|...+++.....  +..  .+  -...++.+-..+...|++++|...+++.....- ..+..    +++.+
T Consensus        24 ~~~~g~~~~A~~~~~~al~~~--~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l   99 (373)
T 1hz4_A           24 AINDGNPDEAERLAKLALEEL--PPG--WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ   99 (373)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTC--CTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHcC--CCC--chhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            345788999999999875532  111  11  112556666788889999999999999874211 11222    23333


Q ss_pred             HHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCC----chhhhHhhhcCcccChhhhhcCChHHHHHHHH
Q 002846          233 LYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD----NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFN  308 (874)
Q Consensus       233 L~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~----d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~  308 (874)
                      -..+.          ..|++++|...+.-.    -+.....+-.    ....+..+-..      +...|++++|...+.
T Consensus       100 a~~~~----------~~G~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~~~la~~------~~~~g~~~~A~~~~~  159 (373)
T 1hz4_A          100 SEILF----------AQGFLQTAWETQEKA----FQLINEQHLEQLPMHEFLVRIRAQL------LWAWARLDEAEASAR  159 (373)
T ss_dssp             HHHHH----------HTTCHHHHHHHHHHH----HHHHHHTTCTTSTHHHHHHHHHHHH------HHHTTCHHHHHHHHH
T ss_pred             HHHHH----------HCCCHHHHHHHHHHH----HHHHHHhccccCcHHHHHHHHHHHH------HHHhcCHHHHHHHHH
Confidence            34444          679999999998511    0111111221    12335555556      888999999999999


Q ss_pred             HHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--
Q 002846          309 EKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN--  386 (874)
Q Consensus       309 eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd--  386 (874)
                      +.....-......+                  ...|           ..+-..+...|++++|...+++.....-.++  
T Consensus       160 ~al~~~~~~~~~~~------------------~~~~-----------~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~  210 (373)
T 1hz4_A          160 SGIEVLSSYQPQQQ------------------LQCL-----------AMLIQCSLARGDLDNARSQLNRLENLLGNGKYH  210 (373)
T ss_dssp             HHHHHTTTSCGGGG------------------HHHH-----------HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCC
T ss_pred             HHHHHhhccCcHHH------------------HHHH-----------HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcc
Confidence            87654321100000                  0111           4555677889999999999998765311111  


Q ss_pred             HHHHH----HHHHHHHhcCChhHHHHHHHHHHHCCCCCC---cccHHHHHHHHHhCCChhHHHHHHHHHHHc----CCCC
Q 002846          387 EASLT----AVGRMAMSMGDGDMAFDMVKRMKSLGINPR---LRSYGPALSVFCNNGDVDKACSVEEHMLEH----GVYP  455 (874)
Q Consensus       387 ~~tyn----~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd---~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~----Gv~P  455 (874)
                      .....    .++..+...|++++|...+++.......+.   ...+..+...+...|+.++|..+++.....    |..+
T Consensus       211 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~  290 (373)
T 1hz4_A          211 SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMS  290 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             hhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchh
Confidence            11111    234457799999999999988754322111   123556778888999999999999887543    3222


Q ss_pred             CHH-HHHHHHHHHHhcCCchHHHHHHHHHHh
Q 002846          456 EEP-ELEALLRVSVEAGKGDRVYYLLHKLRT  485 (874)
Q Consensus       456 d~~-ty~~LI~~~~~~G~~d~A~~ll~~M~~  485 (874)
                      +.. .+..+-.++...|+.++|...|.+...
T Consensus       291 ~~~~~~~~la~~~~~~g~~~~A~~~l~~al~  321 (373)
T 1hz4_A          291 DLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  321 (373)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            332 555666677889999999999888654

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=97.81  E-value=0.0012  Score=64.20  Aligned_cols=165  Identities=18%  Similarity=0.108  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhh
Q 002846          191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG  270 (874)
Q Consensus       191 ~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~  270 (874)
                      ...|..+=..|.+.|++++|+..|++..+.. +-+...|..+-.++.          +.|+.++|...+.          
T Consensus         5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~----------~~~~~~~a~~~~~----------   63 (184)
T 3vtx_A            5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYM----------DIGLPNDAIESLK----------   63 (184)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----------HTTCHHHHHHHHH----------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH----------HCCCHHHHHHHHH----------
Confidence            4678888888999999999999999988653 223455555555555          4566666666553          


Q ss_pred             hcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccc
Q 002846          271 DSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID  350 (874)
Q Consensus       271 ~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~  350 (874)
                                                            ......  |+..                     ..+      
T Consensus        64 --------------------------------------~~~~~~--~~~~---------------------~~~------   76 (184)
T 3vtx_A           64 --------------------------------------KFVVLD--TTSA---------------------EAY------   76 (184)
T ss_dssp             --------------------------------------HHHHHC--CCCH---------------------HHH------
T ss_pred             --------------------------------------HHHhcC--chhH---------------------HHH------
Confidence                                                  322221  1100                     000      


Q ss_pred             cCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHH
Q 002846          351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS  430 (874)
Q Consensus       351 ~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~  430 (874)
                           ..+-..+...++.+.|.+.+.+..... +-+...+..+-..+.+.|++++|.+.|++..+.. +-+...|..+-.
T Consensus        77 -----~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~  149 (184)
T 3vtx_A           77 -----YILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGL  149 (184)
T ss_dssp             -----HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             -----HHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHH
Confidence                 223344555667777777777665542 3356677777777788888888888887776652 223556666777


Q ss_pred             HHHhCCChhHHHHHHHHHHH
Q 002846          431 VFCNNGDVDKACSVEEHMLE  450 (874)
Q Consensus       431 a~~k~G~~~~A~~l~~eM~~  450 (874)
                      .|.+.|+.++|.+.|+...+
T Consensus       150 ~~~~~g~~~~A~~~~~~al~  169 (184)
T 3vtx_A          150 AYEGKGLRDEAVKYFKKALE  169 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHh
Confidence            77788888888888877766

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=97.81  E-value=0.0014  Score=73.57  Aligned_cols=294  Identities=9%  Similarity=-0.036  Sum_probs=168.0

Q ss_pred             HHHhcCChhHHHHHHHHHhhC--CCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C-CCC-CHHHH
Q 002846          159 KMEQRTNDSGQYKVRGITDEK--GSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQRE-----G-IKL-GQYHY  229 (874)
Q Consensus       159 ~~~k~~~~~~A~~vf~eM~~~--g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~-----G-i~p-d~~ty  229 (874)
                      .....|+.++|++.|++-.+.  ....+.......++|+-+-..|...|++++|+..|++..+-     + ..+ ...+|
T Consensus        60 ~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~  139 (472)
T 4g1t_A           60 LKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELD  139 (472)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHH
Confidence            345678999999999875331  11111212234578999999999999999999999987631     1 112 23455


Q ss_pred             HHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHH
Q 002846          230 NVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNE  309 (874)
Q Consensus       230 n~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~e  309 (874)
                      +.+-.++...        ..++.++|...|.       +..+. .-.+...+..+...   ...+...++.++|++.|.+
T Consensus       140 ~~~g~~~~~~--------~~~~y~~A~~~~~-------kal~~-~p~~~~~~~~~~~~---~~~l~~~~~~~~al~~~~~  200 (472)
T 4g1t_A          140 CEEGWTRLKC--------GGNQNERAKVCFE-------KALEK-KPKNPEFTSGLAIA---SYRLDNWPPSQNAIDPLRQ  200 (472)
T ss_dssp             HHHHHHHHHH--------CTTHHHHHHHHHH-------HHHHH-STTCHHHHHHHHHH---HHHHHHSCCCCCTHHHHHH
T ss_pred             HHHHHHHHHH--------ccccHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH---HHHhcCchHHHHHHHHHHH
Confidence            5443344311        2356889999995       32221 11232232222211   0013455777788888877


Q ss_pred             HHHcCCCCCee-eec------------cccHHHHHHhhhcC---CCC-cccccccccccCCccchHHHHHHhcCCHHHHH
Q 002846          310 KENLGQFSNGH-MKL------------NSQLLDGRSNLERG---PDD-QSRKKDWSIDNQDADEIRLSEDAKKYAFQRGF  372 (874)
Q Consensus       310 M~~~Gi~Pd~~-ty~------------~g~~~eA~~l~~~m---~pd-~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~  372 (874)
                      ....  .|+.. .+.            .++..+|...+++.   .|+ ...+           ..+-..|.+.|+.++|.
T Consensus       201 al~l--~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~-----------~~lg~~~~~~~~~~~A~  267 (472)
T 4g1t_A          201 AIRL--NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVL-----------RSAAKFYRRKDEPDKAI  267 (472)
T ss_dssp             HHHH--CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHH-----------HHHHHHHHHTTCHHHHH
T ss_pred             Hhhc--CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHH-----------HHHHHHHHHcCchHHHH
Confidence            6654  23321 111            45566777776664   333 3334           55667777888888888


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHh-------------------cCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 002846          373 EIYEKMCLDEVPMNEASLTAVGRMAMS-------------------MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC  433 (874)
Q Consensus       373 ~lf~~M~~~Gv~Pd~~tyn~LI~~~~~-------------------~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~  433 (874)
                      +.|++..+.. +-+..++..+-..|..                   .+..+.|...++...+.. ..+..+|..+-..|.
T Consensus       268 ~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~  345 (472)
T 4g1t_A          268 ELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHA  345 (472)
T ss_dssp             HHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHH
Confidence            8888776643 2234455555444432                   123456666666665542 234566777777888


Q ss_pred             hCCChhHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHHhcCCchHHHHHHHHHHhc
Q 002846          434 NNGDVDKACSVEEHMLEHGVYPEEP--ELEALLR-VSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       434 k~G~~~~A~~l~~eM~~~Gv~Pd~~--ty~~LI~-~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      ..|+.++|.+.|+...+....+...  .+..+-. .+...|+.++|...|.+....
T Consensus       346 ~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i  401 (472)
T 4g1t_A          346 LADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI  401 (472)
T ss_dssp             HTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred             HhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            8888888888888877654322211  1122211 223567788888888776654

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=97.74  E-value=0.00044  Score=76.07  Aligned_cols=235  Identities=10%  Similarity=0.049  Sum_probs=156.9

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcC
Q 002846          199 DMCSKRGDVMGAIRLYDKAQREG-IKLG----QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSR  273 (874)
Q Consensus       199 ~a~~k~G~~~~Al~lf~~M~~~G-i~pd----~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~  273 (874)
                      ..+...|++++|+..|++....- -.+|    ..+|..+=..+.          ..|+.++|...+.-.    -++....
T Consensus       111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~----------~~~~~~~A~~~~~~a----l~~~~~~  176 (383)
T 3ulq_A          111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYY----------YMKQTYFSMDYARQA----YEIYKEH  176 (383)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH----------HTTCHHHHHHHHHHH----HHHHHTC
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH----------HcCCHHHHHHHHHHH----HHHHHhC
Confidence            45678899999999999998531 1133    245555555555          678999999888511    1121211


Q ss_pred             CC-C--chhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCC-CCeeeeccccHHHHHHhhhcCCCCccccccccc
Q 002846          274 DM-D--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQF-SNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSI  349 (874)
Q Consensus       274 gi-~--d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~-Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i  349 (874)
                      +- .  ...+++.+-..      |...|++++|...|.+.....-. ++.       ...+           .++     
T Consensus       177 ~~~~~~~~~~~~~lg~~------~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~-----------~~~-----  227 (383)
T 3ulq_A          177 EAYNIRLLQCHSLFATN------FLDLKQYEDAISHFQKAYSMAEAEKQP-------QLMG-----------RTL-----  227 (383)
T ss_dssp             STTHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHTTCH-------HHHH-----------HHH-----
T ss_pred             ccchHHHHHHHHHHHHH------HHHhcCHHHHHHHHHHHHHHHHHcCCh-------HHHH-----------HHH-----
Confidence            11 1  12346766667      88999999999999876543100 000       0000           112     


Q ss_pred             ccCCccchHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC
Q 002846          350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD----EV-PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINP  420 (874)
Q Consensus       350 ~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~----Gv-~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~----Gi~P  420 (874)
                            ..+-..|...|+.++|.+.|++....    +. .-...++..+...|.+.|++++|...+++....    +-..
T Consensus       228 ------~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  301 (383)
T 3ulq_A          228 ------YNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVI  301 (383)
T ss_dssp             ------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             ------HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence                  55667788899999999999887761    33 334678899999999999999999999886643    1111


Q ss_pred             CcccHHHHHHHHHhCCC---hhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 002846          421 RLRSYGPALSVFCNNGD---VDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLRT  485 (874)
Q Consensus       421 d~~tYn~LI~a~~k~G~---~~~A~~l~~eM~~~Gv~Pd-~~ty~~LI~~~~~~G~~d~A~~ll~~M~~  485 (874)
                      ....+..+-..|...|+   +++|..+++..   +..|+ ...+..|-..|...|+.++|...|++...
T Consensus       302 ~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          302 YLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            12235556667777888   77777777765   33333 34566788888999999999999988765

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.73  E-value=0.0015  Score=69.44  Aligned_cols=127  Identities=9%  Similarity=-0.037  Sum_probs=84.4

Q ss_pred             chHHHHHHhc-CCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcc------
Q 002846          356 EIRLSEDAKK-YAFQRGFEIYEKMCLD----EVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR------  423 (874)
Q Consensus       356 n~lI~~~~k~-g~~~~A~~lf~~M~~~----Gv~Pd-~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~------  423 (874)
                      +.+-..|... |++++|.+.|++....    +-.+. ..+|+.+...+...|++++|...|++...........      
T Consensus       121 ~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  200 (292)
T 1qqe_A          121 FELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKD  200 (292)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHH
T ss_pred             HHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence            3444556665 8888888888876542    11111 3568889999999999999999999988764332222      


Q ss_pred             cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH------HHHHHHHHHH--hcCCchHHHHHHHHHH
Q 002846          424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP------ELEALLRVSV--EAGKGDRVYYLLHKLR  484 (874)
Q Consensus       424 tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~------ty~~LI~~~~--~~G~~d~A~~ll~~M~  484 (874)
                      .|..+...+...|+.++|...|+...+  +.|+..      .+..|+.++.  ..+++++|...|+.+.
T Consensus       201 ~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~  267 (292)
T 1qqe_A          201 YFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM  267 (292)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence            456677778889999999999998765  234322      3444556554  3456777777776554

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=97.71  E-value=0.0017  Score=70.68  Aligned_cols=236  Identities=15%  Similarity=0.000  Sum_probs=153.5

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCC
Q 002846          199 DMCSKRGDVMGAIRLYDKAQREGIKLGQY----HYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRD  274 (874)
Q Consensus       199 ~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~----tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~g  274 (874)
                      ..+...|++++|+.++++.....-..+..    .++.+-..+.          ..|++++|...+.-.    .++....+
T Consensus        22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~----------~~g~~~~A~~~~~~a----l~~~~~~~   87 (373)
T 1hz4_A           22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH----------CKGELTRSLALMQQT----EQMARQHD   87 (373)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHH----------HHTCHHHHHHHHHHH----HHHHHHTT
T ss_pred             HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHH----------hcCcHHHHHHHHHHH----HHHHHhcC
Confidence            35567899999999999988643222222    3333334444          568999999988511    11112112


Q ss_pred             CC--chhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcC----CC--CCeeeeccccHHHHHHhhhcCCCCcccccc
Q 002846          275 MD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG----QF--SNGHMKLNSQLLDGRSNLERGPDDQSRKKD  346 (874)
Q Consensus       275 i~--d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~G----i~--Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~  346 (874)
                      ..  -..+++.+-..      +...|++++|...+++.....    -.  |...                     ..+  
T Consensus        88 ~~~~~~~~~~~la~~------~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~---------------------~~~--  138 (373)
T 1hz4_A           88 VWHYALWSLIQQSEI------LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE---------------------FLV--  138 (373)
T ss_dssp             CHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHH---------------------HHH--
T ss_pred             cHHHHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHH---------------------HHH--
Confidence            11  11224455555      788999999999998776531    10  1000                     011  


Q ss_pred             cccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc
Q 002846          347 WSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVP----MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL  422 (874)
Q Consensus       347 w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~----Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~  422 (874)
                               ..+-..+...|++++|...+++.....-.    ....+|..+...+...|++++|...+++.....-.++.
T Consensus       139 ---------~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~  209 (373)
T 1hz4_A          139 ---------RIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKY  209 (373)
T ss_dssp             ---------HHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCC
T ss_pred             ---------HHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCc
Confidence                     44556778899999999999987653211    12467888999999999999999999988654222222


Q ss_pred             -ccHHH-----HHHHHHhCCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          423 -RSYGP-----ALSVFCNNGDVDKACSVEEHMLEHGVYP---EEPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       423 -~tYn~-----LI~a~~k~G~~~~A~~l~~eM~~~Gv~P---d~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                       ..+..     .+..+...|+.++|...++........+   ....+..+...+...|+.++|..++++....
T Consensus       210 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~  282 (373)
T 1hz4_A          210 HSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN  282 (373)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence             12222     2234778999999999998876543211   1335677788889999999999999887653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.68  E-value=0.0091  Score=75.66  Aligned_cols=245  Identities=12%  Similarity=-0.006  Sum_probs=177.6

Q ss_pred             HHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 002846          160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA  239 (874)
Q Consensus       160 ~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~  239 (874)
                      ....++.++|.++.++..      .      ..+|..+=.++-+.|++++|+..|.+.      -|...|.-++.+|.  
T Consensus      1086 ie~i~nldrAiE~Aervn------~------p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~-- 1145 (1630)
T 1xi4_A         1086 IEHIGNLDRAYEFAERCN------E------PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAAN-- 1145 (1630)
T ss_pred             HHHHhhHHHHHHHHHhcC------C------HHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHH--
Confidence            446678888998888661      1      268888999999999999999999764      46778888999998  


Q ss_pred             ccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCe
Q 002846          240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG  319 (874)
Q Consensus       240 ~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~  319 (874)
                              +.|++++|.+.+.        |..+ -.++....+.+.-+      |++.+++++......       .|+.
T Consensus      1146 --------~lGkyEEAIeyL~--------mArk-~~~e~~Idt~Lafa------YAKl~rleele~fI~-------~~n~ 1195 (1630)
T 1xi4_A         1146 --------TSGNWEELVKYLQ--------MARK-KARESYVETELIFA------LAKTNRLAELEEFIN-------GPNN 1195 (1630)
T ss_pred             --------HcCCHHHHHHHHH--------HHHh-hcccccccHHHHHH------HHhhcCHHHHHHHHh-------CCCH
Confidence                    8899999999994        4332 11233333447777      888888886444321       2233


Q ss_pred             eeec--------cccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 002846          320 HMKL--------NSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLT  391 (874)
Q Consensus       320 ~ty~--------~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn  391 (874)
                      ..|.        .|+.++|..+|...    ..|           ..+...|++.|++++|.+.+.+-      -+..+|.
T Consensus      1196 ad~~~iGd~le~eg~YeeA~~~Y~kA----~ny-----------~rLA~tLvkLge~q~AIEaarKA------~n~~aWk 1254 (1630)
T 1xi4_A         1196 AHIQQVGDRCYDEKMYDAAKLLYNNV----SNF-----------GRLASTLVHLGEYQAAVDGARKA------NSTRTWK 1254 (1630)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhh----hHH-----------HHHHHHHHHhCCHHHHHHHHHHh------CCHHHHH
Confidence            2222        78889999888874    356           88999999999999999999875      3678999


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-
Q 002846          392 AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA-  470 (874)
Q Consensus       392 ~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~-  470 (874)
                      -+-.+|...|++..|....-.     +.-+...+..++..|-+.|.+++|..+++.-.... .-....|+-|-..|++. 
T Consensus      1255 ev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A         1255 EVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK 1328 (1630)
T ss_pred             HHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCC
Confidence            999999999999999887653     33345566789999999999999999997665433 23444555555566554 


Q ss_pred             -CCchHHHHHHH
Q 002846          471 -GKGDRVYYLLH  481 (874)
Q Consensus       471 -G~~d~A~~ll~  481 (874)
                       +++.++.++|.
T Consensus      1329 peklmEhlk~f~ 1340 (1630)
T 1xi4_A         1329 PQKMREHLELFW 1340 (1630)
T ss_pred             HHHHHHHHHHHH
Confidence             34445555544

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=97.65  E-value=0.0014  Score=75.12  Aligned_cols=165  Identities=8%  Similarity=-0.100  Sum_probs=135.5

Q ss_pred             chhhhHhhhcCcccChhhhhcCCh-HHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCcc
Q 002846          277 NNGQLDYGSSPMIDKLESNSSYRF-DDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDAD  355 (874)
Q Consensus       277 d~vtyn~LI~~~~~~~~~~~~g~~-e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~  355 (874)
                      +...|..+-..      +...|++ ++|...|.+.....  |+.                     ...|           
T Consensus       101 ~a~~~~~lg~~------~~~~g~~~~~A~~~~~~al~~~--p~~---------------------~~a~-----------  140 (474)
T 4abn_A          101 EAQALMLKGKA------LNVTPDYSPEAEVLLSKAVKLE--PEL---------------------VEAW-----------  140 (474)
T ss_dssp             CHHHHHHHHHH------HTSSSSCCHHHHHHHHHHHHHC--TTC---------------------HHHH-----------
T ss_pred             hHHHHHHHHHH------HHhccccHHHHHHHHHHHHhhC--CCC---------------------HHHH-----------
Confidence            44455555555      7888999 99999999887752  321                     1122           


Q ss_pred             chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---------CChhHHHHHHHHHHHCCCCCCcccHH
Q 002846          356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM---------GDGDMAFDMVKRMKSLGINPRLRSYG  426 (874)
Q Consensus       356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~---------G~~d~A~~l~~~M~~~Gi~Pd~~tYn  426 (874)
                      ..+-..|.+.|++++|.+.|++.....  |+..++..+-..|...         |++++|...|++..+.. .-+...|.
T Consensus       141 ~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~  217 (474)
T 4abn_A          141 NQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWY  217 (474)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHH
Confidence            667788899999999999999988764  7788999999999999         99999999999988763 23467778


Q ss_pred             HHHHHHHhC--------CChhHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          427 PALSVFCNN--------GDVDKACSVEEHMLEHGVYP----EEPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       427 ~LI~a~~k~--------G~~~~A~~l~~eM~~~Gv~P----d~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      .+-..|...        |++++|.+.|+...+..  |    +...|..|-..|...|++++|...|.+....
T Consensus       218 ~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l  287 (474)
T 4abn_A          218 ILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD--RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL  287 (474)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC--GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            788888888        99999999999998853  5    7888999999999999999999999998876

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=97.49  E-value=0.0031  Score=63.60  Aligned_cols=142  Identities=9%  Similarity=-0.006  Sum_probs=104.8

Q ss_pred             hhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHH
Q 002846          294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE  373 (874)
Q Consensus       294 ~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~  373 (874)
                      +...|++++|...|.+.....-.++...+                                 ..+-..+.+.|++++|.+
T Consensus        17 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~A~~   63 (228)
T 4i17_A           17 ALNAKNYAVAFEKYSEYLKLTNNQDSVTA---------------------------------YNCGVCADNIKKYKEAAD   63 (228)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTTTCCHHHH---------------------------------HHHHHHHHHTTCHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHhccCCCCcHHH---------------------------------HHHHHHHHHhhcHHHHHH
Confidence            67789999999999988776432333333                                 345667778899999999


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc--------ccHHHHHHHHHhCCChhHHHHHH
Q 002846          374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL--------RSYGPALSVFCNNGDVDKACSVE  445 (874)
Q Consensus       374 lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~--------~tYn~LI~a~~k~G~~~~A~~l~  445 (874)
                      .|++..... +-+..+|..+-..|...|++++|...+++..+.  .|+.        ..|..+=..+...|+.++|.+.|
T Consensus        64 ~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~  140 (228)
T 4i17_A           64 YFDIAIKKN-YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENY  140 (228)
T ss_dssp             HHHHHHHTT-CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHhC-cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHH
Confidence            999888754 225678888999999999999999999988765  3443        34555666777889999999999


Q ss_pred             HHHHHcCCCCC---HHHHHHHHHHHHhcCCc
Q 002846          446 EHMLEHGVYPE---EPELEALLRVSVEAGKG  473 (874)
Q Consensus       446 ~eM~~~Gv~Pd---~~ty~~LI~~~~~~G~~  473 (874)
                      +...+.  .|+   ...|..|-..|...|..
T Consensus       141 ~~al~~--~p~~~~~~~~~~l~~~~~~~~~~  169 (228)
T 4i17_A          141 KHATDV--TSKKWKTDALYSLGVLFYNNGAD  169 (228)
T ss_dssp             HHHTTS--SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhc--CCCcccHHHHHHHHHHHHHHHHH
Confidence            998774  465   45566666666665554

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=97.49  E-value=0.0071  Score=67.76  Aligned_cols=266  Identities=9%  Similarity=-0.014  Sum_probs=167.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C--CCC-CHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhc
Q 002846          191 QFQLRVELDMCSKRGDVMGAIRLYDKAQRE-----G--IKL-GQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVS  262 (874)
Q Consensus       191 ~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~-----G--i~p-d~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~  262 (874)
                      ...||.|=..+...|+.++|++.|++..+.     +  ..| ...+|+.+=.+|.          ..|+.++|...+.-.
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~----------~~g~~~~A~~~~~ka  120 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYY----------HMGRLSDVQIYVDKV  120 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHH----------HTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHH----------HcCChHHHHHHHHHH
Confidence            367898888999999999999999987531     1  122 3568888888888          789999999888511


Q ss_pred             ccCchhhhhcC----CCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeec------------ccc
Q 002846          263 TMNSTELGDSR----DMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL------------NSQ  326 (874)
Q Consensus       263 ~~~s~em~~~~----gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~------------~g~  326 (874)
                          .++....    +.....+|+.+-.+    ......+++++|...|++....  .|+...+.            .++
T Consensus       121 ----~~i~~~~~~~~~~~~~~~~~~~g~~----~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~  190 (472)
T 4g1t_A          121 ----KHVCEKFSSPYRIESPELDCEEGWT----RLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPP  190 (472)
T ss_dssp             ----HHHHHHSCCSSCCCCHHHHHHHHHH----HHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCC
T ss_pred             ----HHHhHhcccccchhhHHHHHHHHHH----HHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchH
Confidence                1121110    11112233332222    0022345789999999988765  46543322            234


Q ss_pred             HHHHHHhhhcC---CCCc-ccccccccccCCccchHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002846          327 LLDGRSNLERG---PDDQ-SRKKDWSIDNQDADEIRLSEDA----KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAM  398 (874)
Q Consensus       327 ~~eA~~l~~~m---~pd~-~ty~~w~i~~~~~~n~lI~~~~----k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~  398 (874)
                      ..+|...+.+.   .|+. ..+           ..+-..+.    ..++.++|.+++++..... +.+..++..+...|.
T Consensus       191 ~~~al~~~~~al~l~p~~~~~~-----------~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~  258 (472)
T 4g1t_A          191 SQNAIDPLRQAIRLNPDNQYLK-----------VLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYR  258 (472)
T ss_dssp             CCCTHHHHHHHHHHCSSCHHHH-----------HHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCcchHHH-----------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHH
Confidence            44555555443   4432 222           22222333    3467789999998877653 446778899999999


Q ss_pred             hcCChhHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHh-------------------CCChhHHHHHHHHHHHcCCCCCHH
Q 002846          399 SMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCN-------------------NGDVDKACSVEEHMLEHGVYPEEP  458 (874)
Q Consensus       399 ~~G~~d~A~~l~~~M~~~Gi~Pd~-~tYn~LI~a~~k-------------------~G~~~~A~~l~~eM~~~Gv~Pd~~  458 (874)
                      ..|++++|...+++..+.  .|+. .+|..+-..|..                   .+..++|...|+...+.. ..+..
T Consensus       259 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~  335 (472)
T 4g1t_A          259 RKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFR  335 (472)
T ss_dssp             HTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCC
T ss_pred             HcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cchhh
Confidence            999999999999998765  3553 334433333321                   123566777777766543 22345


Q ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCChh
Q 002846          459 ELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS  493 (874)
Q Consensus       459 ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~  493 (874)
                      .+..+-..+...|++++|...|++....  .+.+.
T Consensus       336 ~~~~lg~~~~~~~~~~~A~~~~~kaL~~--~~~~~  368 (472)
T 4g1t_A          336 VCSILASLHALADQYEEAEYYFQKEFSK--ELTPV  368 (472)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHS--CCCHH
T ss_pred             hhhhHHHHHHHhccHHHHHHHHHHHHhc--CCCCh
Confidence            6777888899999999999999998876  55554

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=97.43  E-value=0.0024  Score=77.38  Aligned_cols=162  Identities=13%  Similarity=0.083  Sum_probs=130.0

Q ss_pred             hhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchH
Q 002846          279 GQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIR  358 (874)
Q Consensus       279 vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~l  358 (874)
                      ..|+.|=..      +.+.|++++|...|++..+.  .|+..                     ..|           +.+
T Consensus        10 ~al~nLG~~------~~~~G~~~eAi~~~~kAl~l--~P~~~---------------------~a~-----------~nL   49 (723)
T 4gyw_A           10 DSLNNLANI------KREQGNIEEAVRLYRKALEV--FPEFA---------------------AAH-----------SNL   49 (723)
T ss_dssp             HHHHHHHHH------HHHTTCHHHHHHHHHHHHHH--CSCCH---------------------HHH-----------HHH
T ss_pred             HHHHHHHHH------HHHcCCHHHHHHHHHHHHHh--CCCCH---------------------HHH-----------HHH
Confidence            346666566      88999999999999987765  23321                     122           666


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhCCC
Q 002846          359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGD  437 (874)
Q Consensus       359 I~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd-~~tYn~LI~a~~k~G~  437 (874)
                      =..|.+.|++++|.+.|++..+.. +-+..+|..|-.+|...|++++|.+.|++..+.  .|+ ...|+.+-..|.+.|+
T Consensus        50 g~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~  126 (723)
T 4gyw_A           50 ASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGN  126 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence            678889999999999999887753 225778999999999999999999999988765  454 5678888899999999


Q ss_pred             hhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 002846          438 VDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRT  485 (874)
Q Consensus       438 ~~~A~~l~~eM~~~Gv~P-d~~ty~~LI~~~~~~G~~d~A~~ll~~M~~  485 (874)
                      +++|.+.|+...+..  | +...|..|...|...|++++|.+.+++..+
T Consensus       127 ~~eAi~~~~~Al~l~--P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~  173 (723)
T 4gyw_A          127 IPEAIASYRTALKLK--PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS  173 (723)
T ss_dssp             HHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC--CCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence            999999999988753  5 467888899999999999999988887654

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=97.42  E-value=0.00024  Score=72.94  Aligned_cols=131  Identities=14%  Similarity=0.075  Sum_probs=105.0

Q ss_pred             chHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC------CCCC-C
Q 002846          356 EIRLSEDAKKYAFQRGFEIYEKMCLD------EVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL------GINP-R  421 (874)
Q Consensus       356 n~lI~~~~k~g~~~~A~~lf~~M~~~------Gv~P-d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~------Gi~P-d  421 (874)
                      ..+-..|...|++++|.+.|++....      +-.| ...+|..+...|...|++++|...+.+....      .-.| .
T Consensus        47 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  126 (283)
T 3edt_B           47 NILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDV  126 (283)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence            66778888999999999999988754      2222 4568899999999999999999999987754      1112 3


Q ss_pred             cccHHHHHHHHHhCCChhHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          422 LRSYGPALSVFCNNGDVDKACSVEEHMLEH------GVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       422 ~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~------Gv~P-d~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      ..+|..+-..|...|++++|..++++..+.      +-.| ....+..|-..|...|++++|..+|.+....
T Consensus       127 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          127 AKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            567788888999999999999999998765      1123 3567888889999999999999999988763

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=97.41  E-value=0.0014  Score=72.07  Aligned_cols=233  Identities=9%  Similarity=-0.031  Sum_probs=153.0

Q ss_pred             HHHHcCCHHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCC
Q 002846          200 MCSKRGDVMGAIRLYDKAQREG-IKLG----QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRD  274 (874)
Q Consensus       200 a~~k~G~~~~Al~lf~~M~~~G-i~pd----~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~g  274 (874)
                      .+...|++++|+..|++....- -.++    ..+|..+=..|.          ..|+.+.|...+.-.    -++....+
T Consensus       110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~----------~~~~~~~A~~~~~~a----l~~~~~~~  175 (378)
T 3q15_A          110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYY----------HMKQTHVSMYHILQA----LDIYQNHP  175 (378)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH----------HTTCHHHHHHHHHHH----HHHHHTST
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH----------HcCCcHHHHHHHHHH----HHHHHhCC
Confidence            3568899999999999998531 1133    234555555555          678999988888511    11111111


Q ss_pred             C-C--chhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCC-CCeeeeccccHHHHHHhhhcCCCCcccccccccc
Q 002846          275 M-D--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQF-SNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID  350 (874)
Q Consensus       275 i-~--d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~-Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~  350 (874)
                      - .  ...+++.+=..      |...|++++|.+.|.+....--. ++..       ..+           .++      
T Consensus       176 ~~~~~~~~~~~~lg~~------y~~~~~~~~A~~~~~~al~~~~~~~~~~-------~~~-----------~~~------  225 (378)
T 3q15_A          176 LYSIRTIQSLFVIAGN------YDDFKHYDKALPHLEAALELAMDIQNDR-------FIA-----------ISL------  225 (378)
T ss_dssp             TCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHTTCHH-------HHH-----------HHH------
T ss_pred             CchhhHHHHHHHHHHH------HHHhCCHHHHHHHHHHHHHHHHHcCCHH-------HHH-----------HHH------
Confidence            1 1  13346777667      88999999999998876543100 0000       000           111      


Q ss_pred             cCCccchHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----
Q 002846          351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCL-----DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----  421 (874)
Q Consensus       351 ~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~-----~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd----  421 (874)
                           +.+=..|...|+.++|.+.|++...     .. +....++..+...+.+.|+.++|...+++..+..-..+    
T Consensus       226 -----~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  299 (378)
T 3q15_A          226 -----LNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFY  299 (378)
T ss_dssp             -----HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCH
T ss_pred             -----HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence                 4555677889999999999988776     33 23367889999999999999999999998876532211    


Q ss_pred             cccHHHHHHHHHhCCC---hhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 002846          422 LRSYGPALSVFCNNGD---VDKACSVEEHMLEHGVYPEE-PELEALLRVSVEAGKGDRVYYLLHKLRT  485 (874)
Q Consensus       422 ~~tYn~LI~a~~k~G~---~~~A~~l~~eM~~~Gv~Pd~-~ty~~LI~~~~~~G~~d~A~~ll~~M~~  485 (874)
                      ...+..+-..|...|+   +.+|...++.   .+..|+. ..+..|-..|...|+.++|...|.+...
T Consensus       300 ~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          300 KELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            2234444445556777   7777777766   3333333 3556777888999999999999988764

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=97.26  E-value=0.0087  Score=63.94  Aligned_cols=115  Identities=14%  Similarity=0.141  Sum_probs=71.0

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC-cccHHHHH
Q 002846          360 SEDAKKYAFQRGFEIYEKMCLD----EVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINPR-LRSYGPAL  429 (874)
Q Consensus       360 ~~~~k~g~~~~A~~lf~~M~~~----Gv~P-d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~----Gi~Pd-~~tYn~LI  429 (874)
                      ..|.. |++++|++.|++....    |-.+ -..+++.+-..|...|++++|...|++....    +..+. ...|..+.
T Consensus       124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g  202 (307)
T 2ifu_A          124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV  202 (307)
T ss_dssp             HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence            34445 7777777777665432    2111 1357788888889999999999998877653    21111 12455566


Q ss_pred             HHHHhCCChhHHHHHHHHHHHcCCCCC---H---HHHHHHHHHHHhcCCchHHHHH
Q 002846          430 SVFCNNGDVDKACSVEEHMLEHGVYPE---E---PELEALLRVSVEAGKGDRVYYL  479 (874)
Q Consensus       430 ~a~~k~G~~~~A~~l~~eM~~~Gv~Pd---~---~ty~~LI~~~~~~G~~d~A~~l  479 (874)
                      ..+...|+.++|...|++.. .  .|+   .   .....|+.++ ..|+.+.+..+
T Consensus       203 ~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~  254 (307)
T 2ifu_A          203 LVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV  254 (307)
T ss_dssp             HHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence            66667799999999998876 2  232   1   2334455544 56666555553

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=97.24  E-value=0.0027  Score=69.69  Aligned_cols=235  Identities=9%  Similarity=-0.072  Sum_probs=156.4

Q ss_pred             HHHhcCChhHHHHHHHHHhhCCCCCCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCC---C-CHHHHHH
Q 002846          159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRS-EQFQLRVELDMCSKRGDVMGAIRLYDKAQRE--GIK---L-GQYHYNV  231 (874)
Q Consensus       159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~P-d~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~--Gi~---p-d~~tyn~  231 (874)
                      .....++.++|...|+.....-  +..+..+ ...+|..+-..|...|+++.|+..|.+..+.  ...   + ...+++.
T Consensus       112 ~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  189 (383)
T 3ulq_A          112 YELDQREYLSAIKFFKKAESKL--IFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL  189 (383)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTG--GGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHH--hhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            3456789999999999985431  1111122 2357788888999999999999999998742  111   1 1235555


Q ss_pred             HHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCC--chhhhHhhhcCcccChhhhhcCChHHHHHHHHH
Q 002846          232 LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNE  309 (874)
Q Consensus       232 LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~--d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~e  309 (874)
                      +=..|.          ..|+.++|...|.-.    -++....+-.  -..+|+.+-..      |...|++++|...|.+
T Consensus       190 lg~~~~----------~~g~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~lg~~------y~~~g~~~~A~~~~~~  249 (383)
T 3ulq_A          190 FATNFL----------DLKQYEDAISHFQKA----YSMAEAEKQPQLMGRTLYNIGLC------KNSQSQYEDAIPYFKR  249 (383)
T ss_dssp             HHHHHH----------HTTCHHHHHHHHHHH----HHHHHHTTCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHH
T ss_pred             HHHHHH----------HhcCHHHHHHHHHHH----HHHHHHcCChHHHHHHHHHHHHH------HHHCCCHHHHHHHHHH
Confidence            555666          779999999998511    1121211111  12356667677      8899999999999987


Q ss_pred             HHHc----CCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHC----
Q 002846          310 KENL----GQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD----  381 (874)
Q Consensus       310 M~~~----Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~----  381 (874)
                      ....    +-.|+.          +           .++           ..+-..+.+.|+.++|.+.|++....    
T Consensus       250 al~~~~~~~~~~~~----------~-----------~~~-----------~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  297 (383)
T 3ulq_A          250 AIAVFEESNILPSL----------P-----------QAY-----------FLITQIHYKLGKIDKAHEYHSKGMAYSQKA  297 (383)
T ss_dssp             HHHHHHHTTCGGGH----------H-----------HHH-----------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhccchhH----------H-----------HHH-----------HHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence            7652    111111          0           112           56667888999999999999876642    


Q ss_pred             CCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhCCChhHHHHHHHHHHH
Q 002846          382 EVPMNEASLTAVGRMAMSMGD---GDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLE  450 (874)
Q Consensus       382 Gv~Pd~~tyn~LI~~~~~~G~---~d~A~~l~~~M~~~Gi~Pd-~~tYn~LI~a~~k~G~~~~A~~l~~eM~~  450 (874)
                      +-......+..|-..+...|+   +++|+.++++.   +..|+ ...+..+-..|...|+.++|.+.|+...+
T Consensus       298 ~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          298 GDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             TCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            212223446778888888998   77777777654   33343 33566677888999999999999988754

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.22  E-value=0.0018  Score=70.21  Aligned_cols=126  Identities=8%  Similarity=-0.039  Sum_probs=99.4

Q ss_pred             chHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-----CcccHHHHH
Q 002846          356 EIRLSEDAKKYAFQRGFEIYEKMCLDEV-PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-----RLRSYGPAL  429 (874)
Q Consensus       356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv-~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~P-----d~~tYn~LI  429 (874)
                      ..+-..+...|+.++|++++.+-...|- .-+...+..++..+.+.|+++.|.++++.|.+.  .|     +..+..-|.
T Consensus       104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~La  181 (310)
T 3mv2_B          104 YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLA  181 (310)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHH
Confidence            4555778889999999999998766553 236778889999999999999999999999875  46     245555566


Q ss_pred             HHHHh--CC--ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 002846          430 SVFCN--NG--DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT  485 (874)
Q Consensus       430 ~a~~k--~G--~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~  485 (874)
                      .++..  .|  +..+|+.+|+++.+..  |+..+...|+.++.+.|++++|...|+.+.+
T Consensus       182 ea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~  239 (310)
T 3mv2_B          182 ESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLS  239 (310)
T ss_dssp             HHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred             HHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            56332  34  9999999999997754  7655666777788999999999999997765

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=97.22  E-value=0.0056  Score=54.04  Aligned_cols=97  Identities=16%  Similarity=0.134  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 002846          388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVS  467 (874)
Q Consensus       388 ~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~  467 (874)
                      .+|..+...+...|++++|.++++++.... ..+...+..+...+.+.|+.++|..+|+.+.... ..+...+..+...+
T Consensus        10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~   87 (125)
T 1na0_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence            344444555555555555555555544431 1223344444555555555555555555554432 12344555555555


Q ss_pred             HhcCCchHHHHHHHHHHhc
Q 002846          468 VEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       468 ~~~G~~d~A~~ll~~M~~~  486 (874)
                      ...|++++|..+|+++...
T Consensus        88 ~~~~~~~~A~~~~~~~~~~  106 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKALEL  106 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHh
Confidence            5555555555555555443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=97.19  E-value=0.018  Score=57.83  Aligned_cols=194  Identities=10%  Similarity=-0.042  Sum_probs=112.2

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhh
Q 002846          190 EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTEL  269 (874)
Q Consensus       190 d~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em  269 (874)
                      |...|..+=..+.+.|++++|+..|++..+..-.++...+..+-.++.          ..|+.++|...|.       ..
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~----------~~~~~~~A~~~~~-------~a   68 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCAD----------NIKKYKEAADYFD-------IA   68 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH----------HTTCHHHHHHHHH-------HH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHH----------HhhcHHHHHHHHH-------HH
Confidence            445677777788899999999999999987654356655555444444          4566666666663       11


Q ss_pred             hhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCccccccccc
Q 002846          270 GDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSI  349 (874)
Q Consensus       270 ~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i  349 (874)
                      ... .-.+...|                                                                    
T Consensus        69 l~~-~p~~~~~~--------------------------------------------------------------------   79 (228)
T 4i17_A           69 IKK-NYNLANAY--------------------------------------------------------------------   79 (228)
T ss_dssp             HHT-TCSHHHHH--------------------------------------------------------------------
T ss_pred             HHh-CcchHHHH--------------------------------------------------------------------
Confidence            111 00111222                                                                    


Q ss_pred             ccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-
Q 002846          350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE-------ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-  421 (874)
Q Consensus       350 ~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~-------~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd-  421 (874)
                            ..+-..|.+.|+.++|.+.|++..... +-+.       .+|..+-..+...|++++|.+.|++..+.  .|+ 
T Consensus        80 ------~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~  150 (228)
T 4i17_A           80 ------IGKSAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKK  150 (228)
T ss_dssp             ------HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHH
T ss_pred             ------HHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCc
Confidence                  333344555666666666666655432 1122       34666667777888888888888877654  454 


Q ss_pred             --cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          422 --LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       422 --~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                        ...|..+-..|...     +..+++.+...+ ..+...|..+..  ...+.+++|...|++..+.
T Consensus       151 ~~~~~~~~l~~~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l  209 (228)
T 4i17_A          151 WKTDALYSLGVLFYNN-----GADVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVTL  209 (228)
T ss_dssp             HHHHHHHHHHHHHHHH-----HHHHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHH-----HHHHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhc
Confidence              23444444444333     334444444432 223445544443  2345678888888888775

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=97.16  E-value=0.0085  Score=59.26  Aligned_cols=124  Identities=10%  Similarity=-0.044  Sum_probs=104.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCC
Q 002846          358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD  437 (874)
Q Consensus       358 lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~  437 (874)
                      +-..+...|++++|.+.|++.    +.|+..+|..+...|...|++++|...|++..... ..+...|..+-..|...|+
T Consensus        12 ~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~   86 (213)
T 1hh8_A           12 EGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK   86 (213)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence            345667899999999999876    46789999999999999999999999999988763 2356678888889999999


Q ss_pred             hhHHHHHHHHHHHcC--------------CCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          438 VDKACSVEEHMLEHG--------------VYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       438 ~~~A~~l~~eM~~~G--------------v~P-d~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      .++|.+.|+...+..              ..| ....|..+-..|...|+.++|...|++....
T Consensus        87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  150 (213)
T 1hh8_A           87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  150 (213)
T ss_dssp             HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence            999999999998743              111 2267788888899999999999999999876

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=97.16  E-value=0.0049  Score=71.87  Aligned_cols=128  Identities=9%  Similarity=-0.070  Sum_probs=108.1

Q ss_pred             chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhC
Q 002846          356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN  435 (874)
Q Consensus       356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~  435 (874)
                      ..+-..+.+.|++++|.+.|++..+.. +-+..+|..+...|...|++++|.+.+++..+.. .-+...|..+-..|.+.
T Consensus        27 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~  104 (568)
T 2vsy_A           27 LMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGHALEDA  104 (568)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc
Confidence            566677888999999999999988754 3467889999999999999999999999988763 23456788888899999


Q ss_pred             CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHhc
Q 002846          436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA---GKGDRVYYLLHKLRTS  486 (874)
Q Consensus       436 G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~---G~~d~A~~ll~~M~~~  486 (874)
                      |+.++|.+.|+...+.. .-+...+..|...+...   |+.++|...+++..+.
T Consensus       105 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A          105 GQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            99999999999988754 23567888888899999   9999999999998876

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=97.14  E-value=0.009  Score=52.64  Aligned_cols=107  Identities=19%  Similarity=0.204  Sum_probs=85.3

Q ss_pred             hHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCC
Q 002846          357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG  436 (874)
Q Consensus       357 ~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G  436 (874)
                      .+...+...|++++|.++|+++.... +.+..++..+...+...|++++|..+++++.... ..+..++..+...|...|
T Consensus        14 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~   91 (125)
T 1na0_A           14 NLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQG   91 (125)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhc
Confidence            34567788999999999999998754 3467889999999999999999999999998763 345677888899999999


Q ss_pred             ChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 002846          437 DVDKACSVEEHMLEHGVYPE-EPELEALLRVS  467 (874)
Q Consensus       437 ~~~~A~~l~~eM~~~Gv~Pd-~~ty~~LI~~~  467 (874)
                      +.++|...|+.+....  |+ ...+..|-..+
T Consensus        92 ~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~  121 (125)
T 1na0_A           92 DYDEAIEYYQKALELD--PNNAEAKQNLGNAK  121 (125)
T ss_dssp             CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhC--CCcHHHHHHHHHHH
Confidence            9999999999988754  43 34444443333

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=97.10  E-value=0.0082  Score=72.69  Aligned_cols=61  Identities=18%  Similarity=0.159  Sum_probs=43.2

Q ss_pred             CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHh
Q 002846          188 RSE-QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG-QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFE  260 (874)
Q Consensus       188 ~Pd-~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd-~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~  260 (874)
                      .|+ ...|+.|=..|.+.|++++|++.|++..+.  .|+ ...|+.|=.+|.          +.|+.++|...|.
T Consensus         5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~----------~~g~~~eA~~~~~   67 (723)
T 4gyw_A            5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQ----------QQGKLQEALMHYK   67 (723)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHH----------HTTCHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH----------HcCCHHHHHHHHH
Confidence            343 467888888999999999999999998864  344 455655555555          5566666666663

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.08  E-value=0.0082  Score=64.96  Aligned_cols=159  Identities=9%  Similarity=0.033  Sum_probs=115.4

Q ss_pred             hhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHH
Q 002846          294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE  373 (874)
Q Consensus       294 ~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~  373 (874)
                      +...|++++|++++.+-...|-.++        -.++.                        ..++..+.+.|+.+.|.+
T Consensus       110 ~~~~g~~eeAL~~l~~~i~~~~~~~--------~lea~------------------------~l~vqi~L~~~r~d~A~k  157 (310)
T 3mv2_B          110 QAILGDLDKSLETCVEGIDNDEAEG--------TTELL------------------------LLAIEVALLNNNVSTAST  157 (310)
T ss_dssp             HHHHTCHHHHHHHHHHHHTSSCSTT--------HHHHH------------------------HHHHHHHHHTTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHhccCCCcC--------cHHHH------------------------HHHHHHHHHCCCHHHHHH
Confidence            8888999999999987654431101        11111                        667889999999999999


Q ss_pred             HHHHHHHCCCCC-----CHHHHHHHHHHHH--hcC--ChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHH
Q 002846          374 IYEKMCLDEVPM-----NEASLTAVGRMAM--SMG--DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSV  444 (874)
Q Consensus       374 lf~~M~~~Gv~P-----d~~tyn~LI~~~~--~~G--~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l  444 (874)
                      ++++|.+.  .|     +..+..-|+.++.  ..|  +..+|+.+|+++...  .|+..+-..++.++.+.|++++|.++
T Consensus       158 ~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~  233 (310)
T 3mv2_B          158 IFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGI  233 (310)
T ss_dssp             HHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHH
Confidence            99999875  46     3677777777733  334  899999999998765  36544455667788899999999999


Q ss_pred             HHHHHHc-----CC----CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCCh
Q 002846          445 EEHMLEH-----GV----YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP  492 (874)
Q Consensus       445 ~~eM~~~-----Gv----~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp  492 (874)
                      ++.+.+.     ..    .-|..++.-+|......|+  +|.+++.++...  .|..
T Consensus       234 L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~h  286 (310)
T 3mv2_B          234 VELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEH  286 (310)
T ss_dssp             HHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCC
T ss_pred             HHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCC
Confidence            9977653     11    2355666566666666676  899999999987  4443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=97.03  E-value=0.013  Score=60.39  Aligned_cols=162  Identities=10%  Similarity=0.013  Sum_probs=118.0

Q ss_pred             hhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHH
Q 002846          294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE  373 (874)
Q Consensus       294 ~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~  373 (874)
                      +.+.|++++|...|++.....  |+....     .             ..+           ..+-..|.+.|++++|..
T Consensus        25 ~~~~g~~~~A~~~~~~~l~~~--p~~~~~-----~-------------~a~-----------~~lg~~~~~~~~~~~A~~   73 (261)
T 3qky_A           25 FYNQGKYDRAIEYFKAVFTYG--RTHEWA-----A-------------DAQ-----------FYLARAYYQNKEYLLAAS   73 (261)
T ss_dssp             HHHTTCHHHHHHHHHHHGGGC--SCSTTH-----H-------------HHH-----------HHHHHHHHHTTCHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHhC--CCCcch-----H-------------HHH-----------HHHHHHHHHhCcHHHHHH
Confidence            678899999999999987753  322000     0             011           344567788999999999


Q ss_pred             HHHHHHHCCC-CCC-HHHHHHHHHHHHh--------cCChhHHHHHHHHHHHCCCCCCc-ccH-----------------
Q 002846          374 IYEKMCLDEV-PMN-EASLTAVGRMAMS--------MGDGDMAFDMVKRMKSLGINPRL-RSY-----------------  425 (874)
Q Consensus       374 lf~~M~~~Gv-~Pd-~~tyn~LI~~~~~--------~G~~d~A~~l~~~M~~~Gi~Pd~-~tY-----------------  425 (874)
                      .|+......- .|. ...+..+-.++..        .|++++|...|++..+.  .|+. ...                 
T Consensus        74 ~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~~~~~  151 (261)
T 3qky_A           74 EYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKLARKQ  151 (261)
T ss_dssp             HHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHHHHHH
Confidence            9999887531 122 4567777788888        99999999999998875  3543 333                 


Q ss_pred             HHHHHHHHhCCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhc----------CCchHHHHHHHHHHhcCCCCC
Q 002846          426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPE----EPELEALLRVSVEA----------GKGDRVYYLLHKLRTSVRKVS  491 (874)
Q Consensus       426 n~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd----~~ty~~LI~~~~~~----------G~~d~A~~ll~~M~~~~~~~s  491 (874)
                      -.+-..|.+.|++++|...|+...+..  |+    ...+..+..+|...          |++++|...|.++...  .|.
T Consensus       152 ~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~  227 (261)
T 3qky_A          152 YEAARLYERRELYEAAAVTYEAVFDAY--PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPD  227 (261)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTT
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHC--CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCC
Confidence            234567788999999999999998753  43    34666777777755          8889999999999887  554


Q ss_pred             h
Q 002846          492 P  492 (874)
Q Consensus       492 p  492 (874)
                      .
T Consensus       228 ~  228 (261)
T 3qky_A          228 S  228 (261)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=96.99  E-value=0.0098  Score=65.19  Aligned_cols=234  Identities=9%  Similarity=-0.097  Sum_probs=154.0

Q ss_pred             HHhcCChhHHHHHHHHHhhCCCCCCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CC---CC-CHHHHHHH
Q 002846          160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRS-EQFQLRVELDMCSKRGDVMGAIRLYDKAQRE--GI---KL-GQYHYNVL  232 (874)
Q Consensus       160 ~~k~~~~~~A~~vf~eM~~~g~k~~~g~~P-d~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~--Gi---~p-d~~tyn~L  232 (874)
                      ....++..+|...|++......  ..+..| ...+|..+-..|...|+++.|+..+.+....  ..   .+ ...+++.+
T Consensus       111 ~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  188 (378)
T 3q15_A          111 EFDQKEYVEAIGYYREAEKELP--FVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI  188 (378)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTGG--GCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred             HHHHCCHHHHHHHHHHHHHHHh--hCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence            3467899999999999854321  111112 2356777888999999999999999998742  11   11 13355555


Q ss_pred             HHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCC--chhhhHhhhcCcccChhhhhcCChHHHHHHHHHH
Q 002846          233 LYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK  310 (874)
Q Consensus       233 L~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~--d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM  310 (874)
                      =.+|.          ..|+.++|...|.-.    -++....+-.  ...+++.+=..      |...|++++|...|.+.
T Consensus       189 g~~y~----------~~~~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~lg~~------y~~~~~~~~A~~~~~~a  248 (378)
T 3q15_A          189 AGNYD----------DFKHYDKALPHLEAA----LELAMDIQNDRFIAISLLNIANS------YDRSGDDQMAVEHFQKA  248 (378)
T ss_dssp             HHHHH----------HTTCHHHHHHHHHHH----HHHHHHTTCHHHHHHHHHHHHHH------HHHHTCHHHHHHHHHHH
T ss_pred             HHHHH----------HhCCHHHHHHHHHHH----HHHHHHcCCHHHHHHHHHHHHHH------HHHCCCHHHHHHHHHHH
Confidence            55555          789999999998511    1121211111  12346666666      88999999999999877


Q ss_pred             HHcC---CCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHC----CC
Q 002846          311 ENLG---QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD----EV  383 (874)
Q Consensus       311 ~~~G---i~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~----Gv  383 (874)
                      ....   -.|+.          +           .++           ..+-..+.+.|+.++|.+.|++....    +-
T Consensus       249 l~~~~~~~~~~~----------~-----------~~~-----------~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  296 (378)
T 3q15_A          249 AKVSREKVPDLL----------P-----------KVL-----------FGLSWTLCKAGQTQKAFQFIEEGLDHITARSH  296 (378)
T ss_dssp             HHHHHHHCGGGH----------H-----------HHH-----------HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCC
T ss_pred             HHHHHhhCChhH----------H-----------HHH-----------HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC
Confidence            6520   00110          1           111           55667888999999999999987763    22


Q ss_pred             CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHhCCChhHHHHHHHHHHH
Q 002846          384 PMNEASLTAVGRMAMSMGD---GDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACSVEEHMLE  450 (874)
Q Consensus       384 ~Pd~~tyn~LI~~~~~~G~---~d~A~~l~~~M~~~Gi~Pd~-~tYn~LI~a~~k~G~~~~A~~l~~eM~~  450 (874)
                      ......++.+-..+...++   +++|+..+++   .+..|+. ..+..+-..|...|+.++|...|+...+
T Consensus       297 ~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          297 KFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             SCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            2234566777777778888   7777777765   3333333 3455677888899999999999988754

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=96.95  E-value=0.0084  Score=56.26  Aligned_cols=126  Identities=12%  Similarity=0.045  Sum_probs=92.4

Q ss_pred             chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhC
Q 002846          356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN  435 (874)
Q Consensus       356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~  435 (874)
                      ..+-..+...|++++|...|+...... +.+..++..+...+...|++++|...+++..... ..+...|..+-..+...
T Consensus        17 ~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~   94 (166)
T 1a17_A           17 KTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL   94 (166)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHh
Confidence            445566778899999999998877653 3367888888889999999999999998877652 23456677777788889


Q ss_pred             CChhHHHHHHHHHHHcCCCC-CHHHHH--HHHHHHHhcCCchHHHHHHHHHHh
Q 002846          436 GDVDKACSVEEHMLEHGVYP-EEPELE--ALLRVSVEAGKGDRVYYLLHKLRT  485 (874)
Q Consensus       436 G~~~~A~~l~~eM~~~Gv~P-d~~ty~--~LI~~~~~~G~~d~A~~ll~~M~~  485 (874)
                      |+.++|...|+...+..  | +...+.  .+...+.+.|++++|..++.....
T Consensus        95 ~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           95 GKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             TCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            99999999998887753  3 333443  333336677888888888776543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=96.89  E-value=0.024  Score=57.39  Aligned_cols=158  Identities=9%  Similarity=0.012  Sum_probs=109.3

Q ss_pred             hhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHH
Q 002846          294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE  373 (874)
Q Consensus       294 ~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~  373 (874)
                      +.+.|++++|...|+++....  |+....     .+             .+           ..+-..|.+.|++++|..
T Consensus        14 ~~~~g~~~~A~~~~~~~~~~~--p~~~~~-----~~-------------a~-----------~~lg~~~~~~~~~~~A~~   62 (225)
T 2yhc_A           14 KLQDGNWRQAITQLEALDNRY--PFGPYS-----QQ-------------VQ-----------LDLIYAYYKNADLPLAQA   62 (225)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHC--TTSTTH-----HH-------------HH-----------HHHHHHHHHTTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC--CCChHH-----HH-------------HH-----------HHHHHHHHhcCCHHHHHH
Confidence            667899999999999988752  221100     00             11           445567888999999999


Q ss_pred             HHHHHHHCCCC-CCH-HHHHHHHHHHHh------------------cCChhHHHHHHHHHHHCCCCCCccc-HH------
Q 002846          374 IYEKMCLDEVP-MNE-ASLTAVGRMAMS------------------MGDGDMAFDMVKRMKSLGINPRLRS-YG------  426 (874)
Q Consensus       374 lf~~M~~~Gv~-Pd~-~tyn~LI~~~~~------------------~G~~d~A~~l~~~M~~~Gi~Pd~~t-Yn------  426 (874)
                      .|++.....-. +.. ..+-.+-.++..                  .|+.++|...|+++.+.  .|+..- +.      
T Consensus        63 ~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~  140 (225)
T 2yhc_A           63 AIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLV  140 (225)
T ss_dssp             HHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHH
T ss_pred             HHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHH
Confidence            99998875321 221 133333333332                  57899999999998865  455432 21      


Q ss_pred             -----------HHHHHHHhCCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          427 -----------PALSVFCNNGDVDKACSVEEHMLEHGVYPEE----PELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       427 -----------~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~----~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                                 .+-..|.+.|+.++|...|+.+.+.-  |+.    ..+..+..++.+.|+.++|...++.+...
T Consensus       141 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~  213 (225)
T 2yhc_A          141 FLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN  213 (225)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence                       23345778899999999999988753  542    45777888899999999999999988876

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=96.87  E-value=0.019  Score=50.87  Aligned_cols=114  Identities=15%  Similarity=0.101  Sum_probs=66.1

Q ss_pred             chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhC
Q 002846          356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN  435 (874)
Q Consensus       356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~  435 (874)
                      ..+-..+...|++++|.+.|++..... +.+...+..+...+...|++++|...+++..... ..+...|..+-..|...
T Consensus        16 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   93 (131)
T 2vyi_A           16 KTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSL   93 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHh
Confidence            334455566677777777777665542 2345666666667777777777777776665542 12344555555666666


Q ss_pred             CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 002846          436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK  472 (874)
Q Consensus       436 G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~  472 (874)
                      |+.++|...|+...+.. ..+...+..+...+.+.|+
T Consensus        94 ~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           94 NKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence            77777777666665542 1134445555555554444

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=96.76  E-value=0.024  Score=59.74  Aligned_cols=163  Identities=6%  Similarity=-0.067  Sum_probs=115.6

Q ss_pred             hhhcCChHHHHHHHHHHHHcCC-CCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHH
Q 002846          294 SNSSYRFDDLDSTFNEKENLGQ-FSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGF  372 (874)
Q Consensus       294 ~~~~g~~e~A~~lf~eM~~~Gi-~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~  372 (874)
                      +...|++++|..++.+....-. .|+...+       +.           .+           ..+...+...++.++|.
T Consensus        85 ~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~-------~~-----------~~-----------~~l~~~~~~~~~~~~Ai  135 (293)
T 3u3w_A           85 LCKQKRYKEIYNKVWNELKKEEYHPEFQQF-------LQ-----------WQ-----------YYVAAYVLKKVDYEYCI  135 (293)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCCCCHHHHHH-------HH-----------HH-----------HHHHHHHTTSSCHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHhccccCChHHHHH-------HH-----------HH-----------HHHHHHHHcccCHHHHH
Confidence            7888999999999998876421 1110000       00           01           33445566678999999


Q ss_pred             HHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC-----CCCCC-cccHHHHHHHHHhCCChhHH
Q 002846          373 EIYEKMCLDEVP-MN----EASLTAVGRMAMSMGDGDMAFDMVKRMKSL-----GINPR-LRSYGPALSVFCNNGDVDKA  441 (874)
Q Consensus       373 ~lf~~M~~~Gv~-Pd----~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~-----Gi~Pd-~~tYn~LI~a~~k~G~~~~A  441 (874)
                      +.|++....... ++    ..+|+.|-..|...|++++|...|++..+.     +..+. ..+|..+-..|.+.|+.++|
T Consensus       136 ~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A  215 (293)
T 3u3w_A          136 LELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEES  215 (293)
T ss_dssp             HHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHH
Confidence            999998874222 23    347999999999999999999999988741     22222 23777888899999999999


Q ss_pred             HHHHHHHHH----cCCCCC-HHHHHHHHHHHHhcCC-chHHHHHHHHHHh
Q 002846          442 CSVEEHMLE----HGVYPE-EPELEALLRVSVEAGK-GDRVYYLLHKLRT  485 (874)
Q Consensus       442 ~~l~~eM~~----~Gv~Pd-~~ty~~LI~~~~~~G~-~d~A~~ll~~M~~  485 (874)
                      ...+++..+    .+-.+. ...|..+-..+.+.|+ .++|...+++...
T Consensus       216 ~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          216 LYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            999987654    233333 5677888888888995 5999988887654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=96.75  E-value=0.0096  Score=57.76  Aligned_cols=126  Identities=8%  Similarity=0.089  Sum_probs=78.1

Q ss_pred             chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHH
Q 002846          356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRM-AMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFC  433 (874)
Q Consensus       356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~-~~~~G~~d~A~~l~~~M~~~Gi~Pd-~~tYn~LI~a~~  433 (874)
                      ..+-..+.+.|++++|...|+......  |+...+..+... +...+...+|...+++..+.  .|+ ...+..+-..+.
T Consensus        44 ~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~  119 (176)
T 2r5s_A           44 LAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQAAESPELKRLEQELAA--NPDNFELACELAVQYN  119 (176)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence            455566777888888888887765432  343333222111 11222333466777766654  343 556666777777


Q ss_pred             hCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 002846          434 NNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRT  485 (874)
Q Consensus       434 k~G~~~~A~~l~~eM~~~Gv~P-d~~ty~~LI~~~~~~G~~d~A~~ll~~M~~  485 (874)
                      ..|+.++|...|+.+.+..-.+ +...+..|...+...|+.++|...|++...
T Consensus       120 ~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          120 QVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            8888888888888877654221 245677777778888888888877776543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=96.73  E-value=0.014  Score=51.90  Aligned_cols=104  Identities=16%  Similarity=0.171  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcC--CCCC----HHHHH
Q 002846          388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG--VYPE----EPELE  461 (874)
Q Consensus       388 ~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~G--v~Pd----~~ty~  461 (874)
                      ..|..+...+...|++++|...|++..... ..+...|..+-..|...|++++|...++......  ..++    ...|.
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            345566666677777777777777666542 2244555666666667777777777777665532  1122    55666


Q ss_pred             HHHHHHHhcCCchHHHHHHHHHHhcCCCCChhH
Q 002846          462 ALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPST  494 (874)
Q Consensus       462 ~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~T  494 (874)
                      .+-..+...|++++|...|.+....  .+++..
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~  114 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDV  114 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHH
Confidence            7777777788888888888777765  445443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=96.72  E-value=0.011  Score=57.07  Aligned_cols=122  Identities=11%  Similarity=0.074  Sum_probs=94.7

Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHH-HHhCCCh--
Q 002846          362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV-FCNNGDV--  438 (874)
Q Consensus       362 ~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a-~~k~G~~--  438 (874)
                      +...|++++|.+.|+...... +.+...|..+...|...|++++|...|++..+.. ..+...|..+-.. |...|+.  
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~   97 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT   97 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence            345678889999998877653 3467899999999999999999999999987653 1244556656666 6688998  


Q ss_pred             hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          439 DKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       439 ~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      ++|...|+...+.. .-+...+..+-..|...|++++|...|.+....
T Consensus        98 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A           98 AQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            99999999998764 224677888888999999999999999999886

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=96.72  E-value=0.026  Score=55.69  Aligned_cols=120  Identities=7%  Similarity=-0.091  Sum_probs=96.4

Q ss_pred             hhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHH
Q 002846          294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE  373 (874)
Q Consensus       294 ~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~  373 (874)
                      +...|++++|...|.+.    +.|+...|                                 ..+-..|.+.|++++|.+
T Consensus        16 ~~~~~~~~~A~~~~~~a----~~~~~~~~---------------------------------~~lg~~~~~~g~~~~A~~   58 (213)
T 1hh8_A           16 AADKKDWKGALDAFSAV----QDPHSRIC---------------------------------FNIGCMYTILKNMTEAEK   58 (213)
T ss_dssp             HHHTTCHHHHHHHHHTS----SSCCHHHH---------------------------------HHHHHHHHHTTCHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHH----cCCChHHH---------------------------------HHHHHHHHHcCCHHHHHH
Confidence            66788899998888755    33433333                                 677788899999999999


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc----------------ccHHHHHHHHHhCCC
Q 002846          374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL----------------RSYGPALSVFCNNGD  437 (874)
Q Consensus       374 lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~----------------~tYn~LI~a~~k~G~  437 (874)
                      .|++..... +.+...|..+-.+|...|++++|...|++..+..- .+.                ..|..+-..|.+.|+
T Consensus        59 ~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  136 (213)
T 1hh8_A           59 AFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR-GNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE  136 (213)
T ss_dssp             HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT-TCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhC-ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-CccHHHHHHhccccCccchHHHHHHHHHHHHccC
Confidence            999988754 44678999999999999999999999999887521 111                567778888999999


Q ss_pred             hhHHHHHHHHHHHcC
Q 002846          438 VDKACSVEEHMLEHG  452 (874)
Q Consensus       438 ~~~A~~l~~eM~~~G  452 (874)
                      .++|.+.|+...+..
T Consensus       137 ~~~A~~~~~~al~~~  151 (213)
T 1hh8_A          137 WKKAEEQLALATSMK  151 (213)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHcC
Confidence            999999999988754

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.71  E-value=0.0058  Score=64.84  Aligned_cols=165  Identities=6%  Similarity=-0.104  Sum_probs=116.0

Q ss_pred             hhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHH
Q 002846          294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE  373 (874)
Q Consensus       294 ~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~  373 (874)
                      |...|++++|...|.+.......       .+....+          ..+|           +.+-..|.+.|++++|..
T Consensus        47 ~~~~g~~~~A~~~~~~al~~~~~-------~~~~~~~----------a~~~-----------~~lg~~~~~~g~~~~A~~   98 (292)
T 1qqe_A           47 YRLRKELNLAGDSFLKAADYQKK-------AGNEDEA----------GNTY-----------VEAYKCFKSGGNSVNAVD   98 (292)
T ss_dssp             HHHTTCTHHHHHHHHHHHHHHHH-------TTCHHHH----------HHHH-----------HHHHHHHHHTTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHH-------hCCHHHH----------HHHH-----------HHHHHHHHHCCCHHHHHH
Confidence            77789999999888866543100       0000000          1122           666677888999999999


Q ss_pred             HHHHHHHC----CCCC-CHHHHHHHHHHHHhc-CChhHHHHHHHHHHHCC----CCCC-cccHHHHHHHHHhCCChhHHH
Q 002846          374 IYEKMCLD----EVPM-NEASLTAVGRMAMSM-GDGDMAFDMVKRMKSLG----INPR-LRSYGPALSVFCNNGDVDKAC  442 (874)
Q Consensus       374 lf~~M~~~----Gv~P-d~~tyn~LI~~~~~~-G~~d~A~~l~~~M~~~G----i~Pd-~~tYn~LI~a~~k~G~~~~A~  442 (874)
                      .|++...-    |-.. -..+|+.+-..|... |++++|...|++..+..    -.+. ..+|+.+-..|.+.|++++|.
T Consensus        99 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~  178 (292)
T 1qqe_A           99 SLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEAS  178 (292)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            99876542    2111 135788899999996 99999999999876531    1001 346778888999999999999


Q ss_pred             HHHHHHHHcCCCCCH------HHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          443 SVEEHMLEHGVYPEE------PELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       443 ~l~~eM~~~Gv~Pd~------~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      ..|+...+.......      ..|..+..++...|+.++|...|++....
T Consensus       179 ~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l  228 (292)
T 1qqe_A          179 DIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE  228 (292)
T ss_dssp             HHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred             HHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            999999875432221      15677777888999999999999987754

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=96.67  E-value=0.0094  Score=51.59  Aligned_cols=96  Identities=9%  Similarity=0.013  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC---CHHHHHHHH
Q 002846          388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP---EEPELEALL  464 (874)
Q Consensus       388 ~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~P---d~~ty~~LI  464 (874)
                      ..|..+...+...|++++|...|++..+.. ..+...|..+-..|...|++++|...|+...+..  |   +...|..+-
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~l~   83 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI--EDEYNKDVWAAKA   83 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccchHHHHHHHH
Confidence            344555566666666777776666665542 1234455556666666777777777777666542  3   356666677


Q ss_pred             HHHHhc-CCchHHHHHHHHHHhc
Q 002846          465 RVSVEA-GKGDRVYYLLHKLRTS  486 (874)
Q Consensus       465 ~~~~~~-G~~d~A~~ll~~M~~~  486 (874)
                      ..+... |+.++|.+.|.+....
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           84 DALRYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred             HHHHHHhCCHHHHHHHHHHHhhc
Confidence            777777 7777777777777665

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=96.66  E-value=0.025  Score=60.37  Aligned_cols=128  Identities=13%  Similarity=0.058  Sum_probs=91.8

Q ss_pred             chHHHHHHhcCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-CcccH
Q 002846          356 EIRLSEDAKKYAFQRGFEIYEKMCL----DEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINP-RLRSY  425 (874)
Q Consensus       356 n~lI~~~~k~g~~~~A~~lf~~M~~----~Gv~P-d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~----Gi~P-d~~tY  425 (874)
                      +.+-..|.+.|++++|.+.|++-..    .|-.. -..+|+.+-..|.. |++++|...|++....    |-.+ ...+|
T Consensus        80 ~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~  158 (307)
T 2ifu_A           80 EQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELI  158 (307)
T ss_dssp             HHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHH
Confidence            5555667778888888888876543    22111 13577888888888 9999999999876543    1111 13567


Q ss_pred             HHHHHHHHhCCChhHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHhcCCchHHHHHHHHHH
Q 002846          426 GPALSVFCNNGDVDKACSVEEHMLEH----GVYPEE-PELEALLRVSVEAGKGDRVYYLLHKLR  484 (874)
Q Consensus       426 n~LI~a~~k~G~~~~A~~l~~eM~~~----Gv~Pd~-~ty~~LI~~~~~~G~~d~A~~ll~~M~  484 (874)
                      +.+-..|.+.|++++|...|++....    +..+.. ..+..+...+...|+.++|...|++..
T Consensus       159 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          159 GKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY  222 (307)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            77888899999999999999988753    222222 255666667777899999999999987

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=96.65  E-value=0.11  Score=52.27  Aligned_cols=86  Identities=12%  Similarity=0.026  Sum_probs=66.0

Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCH-HHH-----------------HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc--
Q 002846          363 AKKYAFQRGFEIYEKMCLDEVPMNE-ASL-----------------TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL--  422 (874)
Q Consensus       363 ~k~g~~~~A~~lf~~M~~~Gv~Pd~-~ty-----------------n~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~--  422 (874)
                      ...|+.++|...|+++....  |+. .++                 -.+...|.+.|++++|...|+++.+.  .|+.  
T Consensus       107 ~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~  182 (225)
T 2yhc_A          107 RDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQA  182 (225)
T ss_dssp             -CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHH
T ss_pred             cCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCc
Confidence            34678899999999988753  331 122                 23456788999999999999998875  3553  


Q ss_pred             --ccHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 002846          423 --RSYGPALSVFCNNGDVDKACSVEEHMLEHG  452 (874)
Q Consensus       423 --~tYn~LI~a~~k~G~~~~A~~l~~eM~~~G  452 (874)
                        ..+..+..+|.+.|+.++|.+.++.+...+
T Consensus       183 ~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~  214 (225)
T 2yhc_A          183 TRDALPLMENAYRQMQMNAQAEKVAKIIAANS  214 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence              456778889999999999999999988764

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=96.53  E-value=0.059  Score=53.82  Aligned_cols=176  Identities=11%  Similarity=0.048  Sum_probs=112.0

Q ss_pred             hhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHH
Q 002846          294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE  373 (874)
Q Consensus       294 ~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~  373 (874)
                      +...|++++|...|.+.....  |+....        ... ..+.......       ....+.+-..|.+.|++++|..
T Consensus        14 ~~~~g~~~~A~~~~~~al~~~--p~~~~~--------~~~-~~~~~~~~~~-------~~~~~~lg~~~~~~g~~~~A~~   75 (208)
T 3urz_A           14 AIEAGQNGQAVSYFRQTIALN--IDRTEM--------YYW-TNVDKNSEIS-------SKLATELALAYKKNRNYDKAYL   75 (208)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC--HHHHHH--------HHH-HHSCTTSHHH-------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhC--CCChHH--------HHH-hhhcchhhhh-------HHHHHHHHHHHHHCCCHHHHHH
Confidence            667899999999999887652  221110        000 0000000000       0000125567788999999999


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhCCC--hhHHHHHHHHHHH
Q 002846          374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGD--VDKACSVEEHMLE  450 (874)
Q Consensus       374 lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd-~~tYn~LI~a~~k~G~--~~~A~~l~~eM~~  450 (874)
                      .|++..... +-+...|..+-..+...|++++|...|++..+.  .|+ ...|..+-..|...|+  .+.+...+.... 
T Consensus        76 ~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-  151 (208)
T 3urz_A           76 FYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-  151 (208)
T ss_dssp             HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-
Confidence            999988764 336889999999999999999999999998875  354 5566666666655543  344555555543 


Q ss_pred             cCCCCCHHHHH--HHHHHHHhcCCchHHHHHHHHHHhcCCCCChhHHH
Q 002846          451 HGVYPEEPELE--ALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTAD  496 (874)
Q Consensus       451 ~Gv~Pd~~ty~--~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~T~~  496 (874)
                         .|+...|.  .+-.++...|++++|...|++..+.  .|+.....
T Consensus       152 ---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~  194 (208)
T 3urz_A          152 ---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQK  194 (208)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHH
T ss_pred             ---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHH
Confidence               35554432  2333445678999999999999887  66654333

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=96.46  E-value=0.019  Score=51.40  Aligned_cols=98  Identities=8%  Similarity=-0.044  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002846          387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV  466 (874)
Q Consensus       387 ~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~  466 (874)
                      ...|..+...+...|++++|...|++..... ..+...|..+-..|...|+.++|...++...+.. ..+...|..+-..
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~   93 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA   93 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence            3444444445555555555555555444321 1123344444444445555555555555544422 1134444445555


Q ss_pred             HHhcCCchHHHHHHHHHHhc
Q 002846          467 SVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       467 ~~~~G~~d~A~~ll~~M~~~  486 (874)
                      +.+.|++++|...|.+....
T Consensus        94 ~~~~~~~~~A~~~~~~~~~~  113 (133)
T 2lni_A           94 LEAMKDYTKAMDVYQKALDL  113 (133)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHh
Confidence            55555555555555554443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=96.44  E-value=0.019  Score=60.76  Aligned_cols=120  Identities=7%  Similarity=0.017  Sum_probs=47.8

Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHH-HHHHhCCChhHH
Q 002846          363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL-SVFCNNGDVDKA  441 (874)
Q Consensus       363 ~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI-~a~~k~G~~~~A  441 (874)
                      ...|++++|..+|++..... +-+...+..|...+...|++++|..++++....  .|+........ ..+...++.++|
T Consensus       128 ~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~~~~~~~~a  204 (287)
T 3qou_A          128 MQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELLXQAADTPE  204 (287)
T ss_dssp             HHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHHHHHTSCHH
T ss_pred             HhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHHhhcccCcc
Confidence            34444444444444444321 113334444444444444444444444443222  22222111111 112333444444


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          442 CSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       442 ~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      ...++...... .-+...+..|-..|...|+.++|...|.++...
T Consensus       205 ~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~  248 (287)
T 3qou_A          205 IQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRX  248 (287)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence            44444443322 112334444444444444444444444444443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=96.44  E-value=0.065  Score=55.04  Aligned_cols=84  Identities=12%  Similarity=0.021  Sum_probs=61.9

Q ss_pred             cCCHHHHHHHHHHHHHCCCCCC-HHHH-----------------HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc----
Q 002846          365 KYAFQRGFEIYEKMCLDEVPMN-EASL-----------------TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL----  422 (874)
Q Consensus       365 ~g~~~~A~~lf~~M~~~Gv~Pd-~~ty-----------------n~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~----  422 (874)
                      .|+.++|...|++.....  |+ ....                 -.+...|.+.|++++|...|++..+.  .|+.    
T Consensus       110 ~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~  185 (261)
T 3qky_A          110 QTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDA--YPDTPWAD  185 (261)
T ss_dssp             CHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHH
T ss_pred             chhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCchHH
Confidence            778888888888877643  22 2222                 45677889999999999999998875  3542    


Q ss_pred             ccHHHHHHHHHhC----------CChhHHHHHHHHHHHcC
Q 002846          423 RSYGPALSVFCNN----------GDVDKACSVEEHMLEHG  452 (874)
Q Consensus       423 ~tYn~LI~a~~k~----------G~~~~A~~l~~eM~~~G  452 (874)
                      ..+..+-.+|...          |++++|...|+.+.+..
T Consensus       186 ~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~  225 (261)
T 3qky_A          186 DALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF  225 (261)
T ss_dssp             HHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence            3455566677755          88899999999988743

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=96.43  E-value=0.032  Score=48.06  Aligned_cols=95  Identities=9%  Similarity=0.026  Sum_probs=79.9

Q ss_pred             chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CcccHHHHHHHHH
Q 002846          356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP--RLRSYGPALSVFC  433 (874)
Q Consensus       356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~P--d~~tYn~LI~a~~  433 (874)
                      ..+-..+.+.|++++|...|++..... +.+..+|..+...+...|++++|...|++..+..- .  +...|..+-..|.
T Consensus        10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~l~~~~~   87 (112)
T 2kck_A           10 YLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE-DEYNKDVWAAKADALR   87 (112)
T ss_dssp             GGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC-CTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHHH
Confidence            566677888999999999999988754 34678899999999999999999999999887631 2  4667777888889


Q ss_pred             hC-CChhHHHHHHHHHHHcC
Q 002846          434 NN-GDVDKACSVEEHMLEHG  452 (874)
Q Consensus       434 k~-G~~~~A~~l~~eM~~~G  452 (874)
                      +. |+.++|.+.+.......
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~  107 (112)
T 2kck_A           88 YIEGKEVEAEIAEARAKLEH  107 (112)
T ss_dssp             TCSSCSHHHHHHHHHHGGGC
T ss_pred             HHhCCHHHHHHHHHHHhhcc
Confidence            99 99999999999988754

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=96.42  E-value=0.061  Score=46.63  Aligned_cols=98  Identities=13%  Similarity=0.036  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002846          387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV  466 (874)
Q Consensus       387 ~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~  466 (874)
                      ...+..+...+...|++++|...|++..... +.+...+..+-..|...|+.++|...++...+.. ..+...+..+-..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~   81 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA   81 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence            3456666677777777777777777766542 1245556666666777777777777777776643 1245667777777


Q ss_pred             HHhcCCchHHHHHHHHHHhc
Q 002846          467 SVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       467 ~~~~G~~d~A~~ll~~M~~~  486 (874)
                      +...|+.++|...|.+....
T Consensus        82 ~~~~~~~~~A~~~~~~~~~~  101 (118)
T 1elw_A           82 LEFLNRFEEAKRTYEEGLKH  101 (118)
T ss_dssp             HHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHhhHHHHHHHHHHHHHc
Confidence            77788888888888777665

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=96.41  E-value=0.046  Score=48.85  Aligned_cols=109  Identities=12%  Similarity=0.127  Sum_probs=85.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCC
Q 002846          358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD  437 (874)
Q Consensus       358 lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~  437 (874)
                      +-..+.+.|++++|.+.|++..... +.+..++..+...+...|++++|...+++..+.. ..+...|..+-..|.+.|+
T Consensus        22 ~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~   99 (133)
T 2lni_A           22 KGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALEAMKD   99 (133)
T ss_dssp             HHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHHhh
Confidence            4466778999999999999988753 3368889999999999999999999999988753 2346777778889999999


Q ss_pred             hhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc
Q 002846          438 VDKACSVEEHMLEHGVYPE-EPELEALLRVSVEA  470 (874)
Q Consensus       438 ~~~A~~l~~eM~~~Gv~Pd-~~ty~~LI~~~~~~  470 (874)
                      +++|.+.|+...+..  |+ ...+..+-..+...
T Consensus       100 ~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~  131 (133)
T 2lni_A          100 YTKAMDVYQKALDLD--SSCKEAADGYQRCMMAQ  131 (133)
T ss_dssp             HHHHHHHHHHHHHHC--GGGTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHh
Confidence            999999999987643  43 34444444444443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=96.41  E-value=0.0082  Score=58.56  Aligned_cols=131  Identities=14%  Similarity=-0.019  Sum_probs=96.0

Q ss_pred             chHHHHHHhcCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC--Cccc
Q 002846          356 EIRLSEDAKKYAFQRGFEIYEKMCL----DEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINP--RLRS  424 (874)
Q Consensus       356 n~lI~~~~k~g~~~~A~~lf~~M~~----~Gv~P-d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~----Gi~P--d~~t  424 (874)
                      ..+-..+...|++++|.+.|++...    .|..| ...++..+-..+...|++++|...+++....    +-.|  ....
T Consensus        30 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  109 (203)
T 3gw4_A           30 FMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASAN  109 (203)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHH
Confidence            5666778889999999999988776    22222 3467888889999999999999999876543    2112  1345


Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          425 YGPALSVFCNNGDVDKACSVEEHMLEH----GVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       425 Yn~LI~a~~k~G~~~~A~~l~~eM~~~----Gv~P-d~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      +..+-..+...|++++|...+++....    +-.. -..++..|-..+...|++++|...+.+....
T Consensus       110 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  176 (203)
T 3gw4_A          110 AYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI  176 (203)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            666777888899999999999887642    2111 1233567777888999999999999876653

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=96.33  E-value=0.065  Score=47.30  Aligned_cols=99  Identities=10%  Similarity=0.010  Sum_probs=83.9

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 002846          386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR  465 (874)
Q Consensus       386 d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~  465 (874)
                      +...+..+...+...|++++|...|++..... ..+...|..+-..+...|+.++|...++...... ..+...|..+-.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~   88 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL   88 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence            45677888899999999999999999987752 2356778888888999999999999999988753 234778888888


Q ss_pred             HHHhcCCchHHHHHHHHHHhc
Q 002846          466 VSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       466 ~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      .+...|+.++|...|.+....
T Consensus        89 ~~~~~~~~~~A~~~~~~~~~~  109 (131)
T 2vyi_A           89 ALSSLNKHVEAVAYYKKALEL  109 (131)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHhc
Confidence            999999999999999998876

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=96.30  E-value=0.066  Score=56.36  Aligned_cols=163  Identities=6%  Similarity=-0.063  Sum_probs=114.6

Q ss_pred             hhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHH
Q 002846          294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE  373 (874)
Q Consensus       294 ~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~  373 (874)
                      +...|++++|.+.+.+.....-..+. ..     ..+.           .+           ..+...+...|+.++|.+
T Consensus        85 ~~~~~~y~~A~~~~~~~l~~~~~~~~-~~-----~~~~-----------~~-----------~~~~~~~~~~~~~~~A~~  136 (293)
T 2qfc_A           85 LCKQKRYKEIYNKVWNELKKEEYHPE-FQ-----QFLQ-----------WQ-----------YYVAAYVLKKVDYEYCIL  136 (293)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTCCCCHH-HH-----HHHH-----------HH-----------HHHHHHHHTSSCHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHhccccCChh-HH-----HHHH-----------HH-----------HHHHHHHhcCCCHHHHHH
Confidence            78899999999999887765311000 00     0000           00           234445677889999999


Q ss_pred             HHHHHHHCC---CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCC-----cccHHHHHHHHHhCCChhHHH
Q 002846          374 IYEKMCLDE---VPMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKSL-GINPR-----LRSYGPALSVFCNNGDVDKAC  442 (874)
Q Consensus       374 lf~~M~~~G---v~Pd--~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~-Gi~Pd-----~~tYn~LI~a~~k~G~~~~A~  442 (874)
                      .|++.....   ..+.  ..+|+.+-..|...|++++|...|++..+. ...|+     ..+|+.+-..|.+.|+.++|.
T Consensus       137 ~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al  216 (293)
T 2qfc_A          137 ELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESL  216 (293)
T ss_dssp             HHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHH
Confidence            999877532   1222  458999999999999999999999987622 11222     257888888999999999999


Q ss_pred             HHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCchHH-HHHHHHHH
Q 002846          443 SVEEHMLEH----GVYPE-EPELEALLRVSVEAGKGDRV-YYLLHKLR  484 (874)
Q Consensus       443 ~l~~eM~~~----Gv~Pd-~~ty~~LI~~~~~~G~~d~A-~~ll~~M~  484 (874)
                      ..++...+.    +.... ..+|..+-..|.+.|+.++| ...+++..
T Consensus       217 ~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          217 YQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            999887543    22222 56788888889999999999 77676644

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=96.30  E-value=0.02  Score=50.96  Aligned_cols=108  Identities=14%  Similarity=0.162  Sum_probs=86.1

Q ss_pred             chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCC----cccHHHHH
Q 002846          356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI--NPR----LRSYGPAL  429 (874)
Q Consensus       356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi--~Pd----~~tYn~LI  429 (874)
                      ..+-..+...|++++|...|++..... +.+...+..+...+...|++++|...+++.....-  .++    ...|..+-
T Consensus         8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la   86 (131)
T 1elr_A            8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG   86 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence            455667888999999999999988754 44678899999999999999999999998876531  122    56777788


Q ss_pred             HHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002846          430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV  466 (874)
Q Consensus       430 ~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~  466 (874)
                      ..|...|++++|.+.|+...+..  |+...+..+-..
T Consensus        87 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~  121 (131)
T 1elr_A           87 NSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQA  121 (131)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHH
Confidence            88999999999999999998854  666555555443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=96.25  E-value=0.061  Score=62.49  Aligned_cols=118  Identities=12%  Similarity=0.026  Sum_probs=85.5

Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CcccHHHHHHHHHhCCChhHHHH
Q 002846          365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACS  443 (874)
Q Consensus       365 ~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~P-d~~tYn~LI~a~~k~G~~~~A~~  443 (874)
                      .|++++|.+.|++..+.. +-+...|..+-..+...|++++|.+.+++..+.  .| +...|..+-..|...|+.++|.+
T Consensus         2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~   78 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAV   78 (568)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            367889999998877643 235788999999999999999999999998765  34 46677888888999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          444 VEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       444 l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      .|++..+.. .-+...|..|-..|.+.|+.++|...|++..+.
T Consensus        79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  120 (568)
T 2vsy_A           79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL  120 (568)
T ss_dssp             HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            999988754 235678888999999999999999999998876

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=96.23  E-value=0.037  Score=66.32  Aligned_cols=126  Identities=10%  Similarity=-0.027  Sum_probs=104.9

Q ss_pred             chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CcccHHHHHHHHHh
Q 002846          356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCN  434 (874)
Q Consensus       356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~P-d~~tYn~LI~a~~k  434 (874)
                      ..+-..+.+.|++++|.+.|++..+.. +-+...|..+-.+|...|++++|...|++..+.  .| +...|..+-..|.+
T Consensus       437 ~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~  513 (681)
T 2pzi_A          437 LMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT--FPGELAPKLALAATAEL  513 (681)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHH
Confidence            455567888999999999999988753 336788999999999999999999999998875  35 45677778888999


Q ss_pred             CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          435 NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       435 ~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      .|++++ .+.|+...+.. .-+...|..|-.++.+.|+.++|...|++..+.
T Consensus       514 ~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l  563 (681)
T 2pzi_A          514 AGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDEVPPT  563 (681)
T ss_dssp             HTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT
T ss_pred             cCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc
Confidence            999999 99999988754 225677888889999999999999999887765

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.15  E-value=0.077  Score=63.63  Aligned_cols=244  Identities=7%  Similarity=-0.034  Sum_probs=155.1

Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHH-HHHhhcccCchhhhhcCCCC-chhhhHhhh
Q 002846          208 MGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTL-DTFEVSTMNSTELGDSRDMD-NNGQLDYGS  285 (874)
Q Consensus       208 ~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~-~vf~v~~~~s~em~~~~gi~-d~vtyn~LI  285 (874)
                      ..+..+|+++... +.-+...|-....-+-          ..|..++|. .+|.      +-+ .  -++ +...|-..+
T Consensus       326 ~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~----------~~~~~~~a~r~il~------rAi-~--~~P~s~~Lwl~~a  385 (679)
T 4e6h_A          326 ARMTYVYMQAAQH-VCFAPEIWFNMANYQG----------EKNTDSTVITKYLK------LGQ-Q--CIPNSAVLAFSLS  385 (679)
T ss_dssp             HHHHHHHHHHHHH-TTTCHHHHHHHHHHHH----------HHSCCTTHHHHHHH------HHH-H--HCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-cCCCHHHHHHHHHHHH----------hcCcHHHHHHHHHH------HHH-H--hCCCCHHHHHHHH
Confidence            3456678777753 2334555555555554          446667786 8885      222 2  233 333355555


Q ss_pred             cCcccChhhhhcCChHHHHHHHHHHHHcCC---------CCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccc
Q 002846          286 SPMIDKLESNSSYRFDDLDSTFNEKENLGQ---------FSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADE  356 (874)
Q Consensus       286 ~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi---------~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n  356 (874)
                      ..      .-+.|+++.|..+|+.+.....         .|+.-    ..+.....      .....|           -
T Consensus       386 ~~------ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~----~~~~~~~~------~~~~vW-----------i  438 (679)
T 4e6h_A          386 EQ------YELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNE----SAINQLKS------KLTYVY-----------C  438 (679)
T ss_dssp             HH------HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCH----HHHHHHHH------HHHHHH-----------H
T ss_pred             HH------HHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcch----hhhhhhcc------chHHHH-----------H
Confidence            55      6678999999999998876410         02100    00000000      001123           5


Q ss_pred             hHHHHHHhcCCHHHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 002846          357 IRLSEDAKKYAFQRGFEIYEKMCLD-E-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN  434 (874)
Q Consensus       357 ~lI~~~~k~g~~~~A~~lf~~M~~~-G-v~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k  434 (874)
                      ..+....+.|.++.|..+|....+. + ..+......+.|.-.+ .++.+.|..+|+...+. +.-+...+...+.....
T Consensus       439 ~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~  516 (679)
T 4e6h_A          439 VYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKY-FATDGEYINKYLDFLIY  516 (679)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHh
Confidence            5566666788999999999998876 3 2333444444443222 35699999999988876 33344455677887788


Q ss_pred             CCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 002846          435 NGDVDKACSVEEHMLEHGVYP--EEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWF  502 (874)
Q Consensus       435 ~G~~~~A~~l~~eM~~~Gv~P--d~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~T~~~I~~~~  502 (874)
                      .|+.+.|..+|+......-.+  ....|...++.-.+.|+.+.+..+..+|...  .|..+...++..-+
T Consensus       517 ~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry  584 (679)
T 4e6h_A          517 VNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY  584 (679)
T ss_dssp             HTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence            999999999999988765322  4568888998889999999999999999998  66655555543333

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=96.15  E-value=0.057  Score=46.81  Aligned_cols=95  Identities=13%  Similarity=0.078  Sum_probs=79.4

Q ss_pred             chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhC
Q 002846          356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN  435 (874)
Q Consensus       356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~  435 (874)
                      ..+...+...|++++|...|+...... +.+...+..+...+...|++++|...+++..+.. ..+...|..+-..|...
T Consensus         8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~   85 (118)
T 1elw_A            8 KEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFL   85 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHH
Confidence            455667788999999999999988753 3467889999999999999999999999988763 23466778888899999


Q ss_pred             CChhHHHHHHHHHHHcC
Q 002846          436 GDVDKACSVEEHMLEHG  452 (874)
Q Consensus       436 G~~~~A~~l~~eM~~~G  452 (874)
                      |+.++|...++...+..
T Consensus        86 ~~~~~A~~~~~~~~~~~  102 (118)
T 1elw_A           86 NRFEEAKRTYEEGLKHE  102 (118)
T ss_dssp             TCHHHHHHHHHHHHTTC
T ss_pred             hhHHHHHHHHHHHHHcC
Confidence            99999999999988743

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=96.13  E-value=0.053  Score=57.11  Aligned_cols=128  Identities=9%  Similarity=0.021  Sum_probs=97.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCC-CCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCc----ccHHH
Q 002846          358 RLSEDAKKYAFQRGFEIYEKMCLDE-VPMNE----ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN-PRL----RSYGP  427 (874)
Q Consensus       358 lI~~~~k~g~~~~A~~lf~~M~~~G-v~Pd~----~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~-Pd~----~tYn~  427 (874)
                      .+..+...|++++|.+++++..... ..|+.    ..|..+...+...|++++|...|++....... ++.    .+|+.
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            4677889999999999999988743 22332    23445667777788999999999999875332 232    26888


Q ss_pred             HHHHHHhCCChhHHHHHHHHHHHc-----CCCCCH-HHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 002846          428 ALSVFCNNGDVDKACSVEEHMLEH-----GVYPEE-PELEALLRVSVEAGKGDRVYYLLHKLRT  485 (874)
Q Consensus       428 LI~a~~k~G~~~~A~~l~~eM~~~-----Gv~Pd~-~ty~~LI~~~~~~G~~d~A~~ll~~M~~  485 (874)
                      +-..|...|+.++|...|+...+.     +..+.. .+|..+-..|.+.|++++|...+++...
T Consensus       161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~  224 (293)
T 3u3w_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE  224 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            888999999999999999998741     222222 3778888889999999999999987654

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=96.13  E-value=0.024  Score=53.76  Aligned_cols=130  Identities=10%  Similarity=0.038  Sum_probs=98.3

Q ss_pred             hcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CcccHHHHHHHHHhCCChhHH
Q 002846          364 KKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKA  441 (874)
Q Consensus       364 k~g~~~~A~~lf~~M~~~Gv~P-d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~P-d~~tYn~LI~a~~k~G~~~~A  441 (874)
                      ..|++++|++.|......  .| +...+-.|-..|.+.|++++|.+.|++..+.  .| +...|..+-..|.+.|++++|
T Consensus         9 ~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A   84 (150)
T 4ga2_A            9 SKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTDKA   84 (150)
T ss_dssp             CHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchHHH
Confidence            457888999988876543  23 2345667889999999999999999998876  34 467788888899999999999


Q ss_pred             HHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCchHHHHH-HHHHHhcCCCC-ChhHHHHHHHH
Q 002846          442 CSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYL-LHKLRTSVRKV-SPSTADVIAKW  501 (874)
Q Consensus       442 ~~l~~eM~~~Gv~P-d~~ty~~LI~~~~~~G~~d~A~~l-l~~M~~~~~~~-sp~T~~~I~~~  501 (874)
                      ...|+...+..  | +...|..|-..|.+.|+.++|... +++..+.  .| .|..+.....+
T Consensus        85 ~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~l  143 (150)
T 4ga2_A           85 VECYRRSVELN--PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQL  143 (150)
T ss_dssp             HHHHHHHHHHC--TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHH
Confidence            99999988753  6 467888888899999999877665 5666654  33 33355544333

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=96.12  E-value=0.053  Score=49.80  Aligned_cols=88  Identities=16%  Similarity=0.134  Sum_probs=46.1

Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhH
Q 002846          361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK  440 (874)
Q Consensus       361 ~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~  440 (874)
                      .|.+.|++++|++.|++..+.. +-+..+|..+-.+|.+.|++++|...|++..+.. ..+...|..+-..|...|++++
T Consensus        22 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~   99 (126)
T 4gco_A           22 EYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAMREWSK   99 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHCCCHHH
Confidence            3445566666666665554432 2345555555556666666666666665554431 1123444445555555555555


Q ss_pred             HHHHHHHHHH
Q 002846          441 ACSVEEHMLE  450 (874)
Q Consensus       441 A~~l~~eM~~  450 (874)
                      |.+.|+...+
T Consensus       100 A~~~~~~al~  109 (126)
T 4gco_A          100 AQRAYEDALQ  109 (126)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555555544

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=96.11  E-value=0.11  Score=46.44  Aligned_cols=90  Identities=17%  Similarity=0.051  Sum_probs=57.7

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHCCCCCCcc----cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC----HHHHHHHH
Q 002846          393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLR----SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE----EPELEALL  464 (874)
Q Consensus       393 LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~----tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd----~~ty~~LI  464 (874)
                      +...+...|++++|...|+...+..  |+..    .+..+-..|.+.|++++|...|+......  |+    ...+..+-
T Consensus         8 ~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la   83 (129)
T 2xev_A            8 VAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLG   83 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHH
Confidence            3445566777777777777666542  3332    44445556667777777777777766543  33    45556666


Q ss_pred             HHHHhcCCchHHHHHHHHHHhc
Q 002846          465 RVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       465 ~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      ..+...|+.++|...|+++...
T Consensus        84 ~~~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           84 LSQYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHH
Confidence            6777778888888888777765

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=96.06  E-value=0.055  Score=58.74  Aligned_cols=128  Identities=11%  Similarity=-0.001  Sum_probs=102.0

Q ss_pred             chHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 002846          356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN--------------EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR  421 (874)
Q Consensus       356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd--------------~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd  421 (874)
                      ..+=..|.+.|++++|...|++.....-...              ..+|..+-.+|.+.|++++|...+++..+.. ..+
T Consensus       151 ~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~  229 (336)
T 1p5q_A          151 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SNN  229 (336)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCc
Confidence            4455677889999999999998887542211              5899999999999999999999999988763 235


Q ss_pred             cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCchHH-HHHHHHHHhc
Q 002846          422 LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRV-YYLLHKLRTS  486 (874)
Q Consensus       422 ~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~P-d~~ty~~LI~~~~~~G~~d~A-~~ll~~M~~~  486 (874)
                      ...|..+-.+|...|++++|...|+...+..  | +...+..|-..+.+.|+.++| ..++..|...
T Consensus       230 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          230 EKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER  294 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6778888889999999999999999988753  4 566778888888888888888 4566666543

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.06  E-value=0.12  Score=47.01  Aligned_cols=98  Identities=15%  Similarity=0.065  Sum_probs=71.8

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHH
Q 002846          386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELE  461 (874)
Q Consensus       386 d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd----~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~  461 (874)
                      +...+..+...+...|++++|..+|++..+.  .|+    ...|..+-..|...|++++|...++...... ..+...|.
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  103 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY  103 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence            5667777777788888888888888877654  455    4666667777778888888888887776642 12466677


Q ss_pred             HHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          462 ALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       462 ~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      .+-..+...|+.++|...|.+....
T Consensus       104 ~~a~~~~~~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A          104 RRSQALEKLGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            7777788888888888888887765

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=96.05  E-value=0.084  Score=47.83  Aligned_cols=100  Identities=12%  Similarity=-0.058  Sum_probs=79.8

Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 002846          385 MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL  464 (874)
Q Consensus       385 Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI  464 (874)
                      .+...|..+-..+...|++++|...|++..... ..+...|..+-..|...|++++|...++...... .-+...|..+-
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~   84 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG   84 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence            467788888888999999999999998877653 2345677777788888999999999998887754 22567788888


Q ss_pred             HHHHhcCCchHHHHHHHHHHhc
Q 002846          465 RVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       465 ~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      ..+...|++++|...|.+....
T Consensus        85 ~~~~~~~~~~~A~~~~~~a~~~  106 (137)
T 3q49_B           85 QCQLEMESYDEAIANLQRAYSL  106 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHH
Confidence            8888999999999999887764

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=96.01  E-value=0.07  Score=51.09  Aligned_cols=90  Identities=12%  Similarity=0.010  Sum_probs=55.2

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChh
Q 002846          360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD  439 (874)
Q Consensus       360 ~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~  439 (874)
                      ..+.+.|++++|...|+...... +-+...|..+-.+|...|++++|...|++..+.. +-+...|..+=.+|.+.|+.+
T Consensus        44 ~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~~~  121 (151)
T 3gyz_A           44 YDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLRLKAPL  121 (151)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHH
Confidence            44556677777777776666543 2345666666666777777777777776665542 112445555556666666777


Q ss_pred             HHHHHHHHHHHc
Q 002846          440 KACSVEEHMLEH  451 (874)
Q Consensus       440 ~A~~l~~eM~~~  451 (874)
                      +|...|+...+.
T Consensus       122 eA~~~~~~al~l  133 (151)
T 3gyz_A          122 KAKECFELVIQH  133 (151)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            776666666653

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=95.98  E-value=0.084  Score=50.53  Aligned_cols=101  Identities=4%  Similarity=-0.085  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 002846          387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALL  464 (874)
Q Consensus       387 ~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~P-d~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~P-d~~ty~~LI  464 (874)
                      ...+..+-..+.+.|++++|...|++....  .| +...|..+=.+|...|++++|...|+...+..  | +...|..|-
T Consensus        36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~~~~~~~~lg  111 (151)
T 3gyz_A           36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--KNDYTPVFHTG  111 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CCCcHHHHHHH
Confidence            456777888899999999999999998876  34 46677777788899999999999999998754  4 467788888


Q ss_pred             HHHHhcCCchHHHHHHHHHHhcCCCCChh
Q 002846          465 RVSVEAGKGDRVYYLLHKLRTSVRKVSPS  493 (874)
Q Consensus       465 ~~~~~~G~~d~A~~ll~~M~~~~~~~sp~  493 (874)
                      .+|.+.|+.++|...|++....  .+.+.
T Consensus       112 ~~~~~lg~~~eA~~~~~~al~l--~~~~~  138 (151)
T 3gyz_A          112 QCQLRLKAPLKAKECFELVIQH--SNDEK  138 (151)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence            8999999999999999999887  55554

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=95.95  E-value=0.27  Score=51.50  Aligned_cols=94  Identities=5%  Similarity=-0.077  Sum_probs=68.5

Q ss_pred             chHHHHHHhcCCHHHHHHHHHHHHH----CCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC-ccc
Q 002846          356 EIRLSEDAKKYAFQRGFEIYEKMCL----DEVPM--NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINPR-LRS  424 (874)
Q Consensus       356 n~lI~~~~k~g~~~~A~~lf~~M~~----~Gv~P--d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~----Gi~Pd-~~t  424 (874)
                      +.+-..|...|++++|.+.|++...    .+-.+  ...+|+.+...|...|++++|...+++..+.    +.... ..+
T Consensus       159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~  238 (293)
T 2qfc_A          159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL  238 (293)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            5566777888999999999987762    11111  1268899999999999999999999976543    11111 456


Q ss_pred             HHHHHHHHHhCCChhHH-HHHHHHHH
Q 002846          425 YGPALSVFCNNGDVDKA-CSVEEHML  449 (874)
Q Consensus       425 Yn~LI~a~~k~G~~~~A-~~l~~eM~  449 (874)
                      |..+-..|.+.|+.++| ...++...
T Consensus       239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          239 YYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            67777888899999999 77666543

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=95.94  E-value=0.035  Score=52.56  Aligned_cols=111  Identities=12%  Similarity=0.054  Sum_probs=85.0

Q ss_pred             hHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhC
Q 002846          357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNN  435 (874)
Q Consensus       357 ~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd-~~tYn~LI~a~~k~  435 (874)
                      .+=..|.+.|++++|.+.|++..+.. +-+..+|..+-.+|...|++++|...|++..+.  .|+ ...|..+-..|.+.
T Consensus        36 ~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~  112 (150)
T 4ga2_A           36 YFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRRSVEL--NPTQKDLVLKIAELLCKN  112 (150)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence            34567889999999999999988753 336889999999999999999999999998875  454 56777788889999


Q ss_pred             CChhHHHHH-HHHHHHcCCCC-CHHHHHHHHHHHHhcCC
Q 002846          436 GDVDKACSV-EEHMLEHGVYP-EEPELEALLRVSVEAGK  472 (874)
Q Consensus       436 G~~~~A~~l-~~eM~~~Gv~P-d~~ty~~LI~~~~~~G~  472 (874)
                      |+.++|.+. ++...+.  .| +...|...-..+...|+
T Consensus       113 ~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A          113 DVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             CSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCCC
T ss_pred             CChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCc
Confidence            999877665 4666653  35 45556655555555553

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=95.93  E-value=0.023  Score=54.62  Aligned_cols=123  Identities=7%  Similarity=0.004  Sum_probs=90.5

Q ss_pred             hhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHH
Q 002846          294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE  373 (874)
Q Consensus       294 ~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~  373 (874)
                      +...|++++|...|.+.....  |+.                     ...|           ..+-..|...|++++|..
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~--p~~---------------------~~~~-----------~~lg~~~~~~~~~~~A~~   65 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRAN--PQN---------------------SEQW-----------ALLGEYYLWQNDYSNSLL   65 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHC--CSC---------------------HHHH-----------HHHHHHHHHTTCHHHHHH
T ss_pred             hhhccCHHHHHHHHHHHHHhC--CCc---------------------HHHH-----------HHHHHHHHHcCCHHHHHH
Confidence            566778888888887766542  221                     1222           566677889999999999


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHH-HHhcCCh--hHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHH
Q 002846          374 IYEKMCLDEVPMNEASLTAVGRM-AMSMGDG--DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE  450 (874)
Q Consensus       374 lf~~M~~~Gv~Pd~~tyn~LI~~-~~~~G~~--d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~  450 (874)
                      .|++..... +.+...+..+... +...|++  ++|...+++..... .-+...+..+-..|...|+.++|...|+...+
T Consensus        66 ~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  143 (177)
T 2e2e_A           66 AYRQALQLR-GENAELYAALATVLYYQASQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD  143 (177)
T ss_dssp             HHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence            999988753 2367788888888 7799998  99999999988763 12356677788889999999999999999887


Q ss_pred             cC
Q 002846          451 HG  452 (874)
Q Consensus       451 ~G  452 (874)
                      ..
T Consensus       144 ~~  145 (177)
T 2e2e_A          144 LN  145 (177)
T ss_dssp             TC
T ss_pred             hC
Confidence            53

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=95.78  E-value=0.03  Score=67.20  Aligned_cols=172  Identities=8%  Similarity=-0.067  Sum_probs=123.7

Q ss_pred             CCCCHHHHHHHHhhcccCchhhh--------hcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCe
Q 002846          248 KSGSGMRTLDTFEVSTMNSTELG--------DSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG  319 (874)
Q Consensus       248 k~G~~~~A~~vf~v~~~~s~em~--------~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~  319 (874)
                      ..|+.++|...+.       +..        .. .-.+...|..+-..      +...|++++|...|++..+..  |+.
T Consensus       403 ~~~~~~~A~~~~~-------~al~~~~~~~~~~-~p~~~~~~~~~a~~------~~~~g~~~~A~~~~~~al~~~--p~~  466 (681)
T 2pzi_A          403 VLSQPVQTLDSLR-------AARHGALDADGVD-FSESVELPLMEVRA------LLDLGDVAKATRKLDDLAERV--GWR  466 (681)
T ss_dssp             TTCCHHHHHHHHH-------HHHTC-------C-CTTCSHHHHHHHHH------HHHHTCHHHHHHHHHHHHHHH--CCC
T ss_pred             cccCHHHHHHHHH-------Hhhhhcccccccc-cccchhHHHHHHHH------HHhcCCHHHHHHHHHHHhccC--cch
Confidence            5788999999985       333        11 11144556666666      889999999999999887752  222


Q ss_pred             eeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 002846          320 HMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS  399 (874)
Q Consensus       320 ~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~  399 (874)
                      .                     ..|           ..+=..|.+.|++++|.+.|++..+.. +-+...|..+-.+|.+
T Consensus       467 ~---------------------~a~-----------~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~  513 (681)
T 2pzi_A          467 W---------------------RLV-----------WYRAVAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAEL  513 (681)
T ss_dssp             H---------------------HHH-----------HHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHH
T ss_pred             H---------------------HHH-----------HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence            1                     112           445566788999999999999988753 2356788999999999


Q ss_pred             cCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCC
Q 002846          400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGK  472 (874)
Q Consensus       400 ~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd-~~ty~~LI~~~~~~G~  472 (874)
                      .|++++ .+.|++..+.. .-+...|..+-..|.+.|+.++|.+.|+...+.  .|+ ...|..+..++...|.
T Consensus       514 ~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          514 AGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred             cCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence            999999 99999987752 124567788888999999999999999987663  476 4556666666655454

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=95.72  E-value=0.13  Score=47.04  Aligned_cols=96  Identities=7%  Similarity=-0.076  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 002846          389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV  468 (874)
Q Consensus       389 tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~  468 (874)
                      .+..+=..|.+.|++++|.+.|++..+.. +-+...|..+-.+|.+.|++++|...|+...+.. ..+...|..+-.++.
T Consensus        15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~   92 (126)
T 4gco_A           15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV   92 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence            45556678899999999999999987652 2356778888889999999999999999988753 235778888999999


Q ss_pred             hcCCchHHHHHHHHHHhc
Q 002846          469 EAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       469 ~~G~~d~A~~ll~~M~~~  486 (874)
                      ..|++++|...|++..+.
T Consensus        93 ~~~~~~~A~~~~~~al~l  110 (126)
T 4gco_A           93 AMREWSKAQRAYEDALQV  110 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHH
Confidence            999999999999998876

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=95.71  E-value=0.068  Score=64.13  Aligned_cols=231  Identities=8%  Similarity=-0.079  Sum_probs=154.6

Q ss_pred             HHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCccc
Q 002846          169 QYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAI-RLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPA  247 (874)
Q Consensus       169 A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al-~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~  247 (874)
                      +..+|++....-       +-+...|-....-+-+.|+.++|. .+|++.... ++.+...|-..+...-          
T Consensus       328 v~~~Ye~aL~~~-------p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee----------  389 (679)
T 4e6h_A          328 MTYVYMQAAQHV-------CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYE----------  389 (679)
T ss_dssp             HHHHHHHHHHHT-------TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHH----------
T ss_pred             HHHHHHHHHHHc-------CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH----------
Confidence            456677764421       113367777777778889999997 999999853 3445555555566555          


Q ss_pred             CCCCHHHHHHHHhhcccCchhhhhc---------CCCC------------chhhhHhhhcCcccChhhhhcCChHHHHHH
Q 002846          248 KSGSGMRTLDTFEVSTMNSTELGDS---------RDMD------------NNGQLDYGSSPMIDKLESNSSYRFDDLDST  306 (874)
Q Consensus       248 k~G~~~~A~~vf~v~~~~s~em~~~---------~gi~------------d~vtyn~LI~~~~~~~~~~~~g~~e~A~~l  306 (874)
                      +.|++++|..+|+       .+...         .+.+            ....|-..+..      ..+.|.++.|..+
T Consensus       390 ~~~~~e~aR~iye-------k~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~------erR~~~l~~AR~v  456 (679)
T 4e6h_A          390 LNTKIPEIETTIL-------SCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT------MKRIQGLAASRKI  456 (679)
T ss_dssp             HTTCHHHHHHHHH-------HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH------HHHHHCHHHHHHH
T ss_pred             HhCCHHHHHHHHH-------HHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH------HHHcCCHHHHHHH
Confidence            6789999999995       32221         0111            11246666666      6677889999999


Q ss_pred             HHHHHHc-C-CCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 002846          307 FNEKENL-G-QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVP  384 (874)
Q Consensus       307 f~eM~~~-G-i~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~  384 (874)
                      |...... + +.+.++..                                 .+.|... ..++.+.|..+|+...+. ++
T Consensus       457 f~~A~~~~~~~~~~lyi~---------------------------------~A~lE~~-~~~d~e~Ar~ife~~Lk~-~p  501 (679)
T 4e6h_A          457 FGKCRRLKKLVTPDIYLE---------------------------------NAYIEYH-ISKDTKTACKVLELGLKY-FA  501 (679)
T ss_dssp             HHHHHHTGGGSCTHHHHH---------------------------------HHHHHHT-TTSCCHHHHHHHHHHHHH-HT
T ss_pred             HHHHHHhcCCCChHHHHH---------------------------------HHHHHHH-hCCCHHHHHHHHHHHHHH-CC
Confidence            9988765 2 11111111                                 2222221 134589999999988876 34


Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 002846          385 MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP--RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEA  462 (874)
Q Consensus       385 Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~P--d~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~  462 (874)
                      -+...+...++.....|+.+.|..+|+........+  ....|...+..-.+.|+.+.+..|.+.|.+.-  |+......
T Consensus       502 ~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~--P~~~~~~~  579 (679)
T 4e6h_A          502 TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF--PEVNKLEE  579 (679)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS--TTCCHHHH
T ss_pred             CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCcHHHH
Confidence            466777899999999999999999999877653211  24577888888888999999999999998854  66555555


Q ss_pred             HHHHH
Q 002846          463 LLRVS  467 (874)
Q Consensus       463 LI~~~  467 (874)
                      +++-|
T Consensus       580 f~~ry  584 (679)
T 4e6h_A          580 FTNKY  584 (679)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            55444

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=95.70  E-value=0.2  Score=46.49  Aligned_cols=98  Identities=10%  Similarity=-0.025  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002846          387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV  466 (874)
Q Consensus       387 ~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~  466 (874)
                      ...|..+...+...|++++|...|++..... ..+...|..+-..+...|++++|...++...... ..+...|..+-..
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~   90 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS   90 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence            3467778888999999999999999987752 2356778888888999999999999999988754 2357788888889


Q ss_pred             HHhcCCchHHHHHHHHHHhc
Q 002846          467 SVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       467 ~~~~G~~d~A~~ll~~M~~~  486 (874)
                      +...|+.++|...|.+....
T Consensus        91 ~~~~~~~~~A~~~~~~a~~~  110 (166)
T 1a17_A           91 NMALGKFRAALRDYETVVKV  110 (166)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHh
Confidence            99999999999999999876

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=95.69  E-value=0.083  Score=55.79  Aligned_cols=122  Identities=7%  Similarity=-0.068  Sum_probs=84.9

Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 002846          384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEA  462 (874)
Q Consensus       384 ~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~P-d~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~  462 (874)
                      +.+...+..+...+...|++++|..+|++....  .| +...+..+-..|...|+.++|..+++.....  .|+......
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~  189 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGL  189 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHH
Confidence            345566777888889999999999999988765  34 3566777888889999999999999987664  366554433


Q ss_pred             HHH-HHHhcCCchHHHHHHHHHHhcCCCCCh-hH-HHHHHHHHhcchHHHhh
Q 002846          463 LLR-VSVEAGKGDRVYYLLHKLRTSVRKVSP-ST-ADVIAKWFNSKEAARLG  511 (874)
Q Consensus       463 LI~-~~~~~G~~d~A~~ll~~M~~~~~~~sp-~T-~~~I~~~~~s~~~~~a~  511 (874)
                      ... .+...+..++|...|++....  .|.. .. ++.-..+...+...+|.
T Consensus       190 ~~~~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~  239 (287)
T 3qou_A          190 VAQIELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEAL  239 (287)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHH
Confidence            333 256778888899988888776  4432 23 33344555555554443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=95.63  E-value=0.14  Score=45.97  Aligned_cols=89  Identities=10%  Similarity=0.023  Sum_probs=46.8

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChh
Q 002846          360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD  439 (874)
Q Consensus       360 ~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~  439 (874)
                      ..+.+.|++++|.+.|++..... +.+...|..+-.++.+.|++++|...+++..+.. +-+...|..+-..|...|+.+
T Consensus        12 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~   89 (126)
T 3upv_A           12 KEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYA   89 (126)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhCHH
Confidence            34455566666666666555432 2245555666666666666666666665555431 112334444445555555555


Q ss_pred             HHHHHHHHHHH
Q 002846          440 KACSVEEHMLE  450 (874)
Q Consensus       440 ~A~~l~~eM~~  450 (874)
                      +|...|+...+
T Consensus        90 ~A~~~~~~al~  100 (126)
T 3upv_A           90 SALETLDAART  100 (126)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            55555555443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=95.63  E-value=0.095  Score=49.71  Aligned_cols=99  Identities=13%  Similarity=0.045  Sum_probs=75.6

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 002846          386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR  465 (874)
Q Consensus       386 d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~  465 (874)
                      +...|..+-..+...|++++|...|++..+.. .-+...|..+-..|.+.|++++|...|+...+.. .-+...|..+-.
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~   87 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL   87 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            34567777788888888888888888877652 1245667777778888888888888888887754 224677788888


Q ss_pred             HHHhcCCchHHHHHHHHHHhc
Q 002846          466 VSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       466 ~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      .|...|++++|...|.+....
T Consensus        88 ~~~~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHh
Confidence            888889999999988887765

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=95.58  E-value=0.032  Score=53.97  Aligned_cols=152  Identities=10%  Similarity=0.060  Sum_probs=102.5

Q ss_pred             CCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccH
Q 002846          248 KSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQL  327 (874)
Q Consensus       248 k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~  327 (874)
                      ..|++++|...|.       +.... .-.+...|..+-..      +...|++++|...|+.....  .|+. .+     
T Consensus        18 ~~g~~~~A~~~~~-------~al~~-~P~~~~a~~~la~~------~~~~g~~~~A~~~~~~a~~~--~p~~-~~-----   75 (176)
T 2r5s_A           18 QQGEHAQALNVIQ-------TLSDE-LQSRGDVKLAKADC------LLETKQFELAQELLATIPLE--YQDN-SY-----   75 (176)
T ss_dssp             HTTCHHHHHHHHH-------TSCHH-HHTSHHHHHHHHHH------HHHTTCHHHHHHHHTTCCGG--GCCH-HH-----
T ss_pred             HcCCHHHHHHHHH-------HHHHH-CCCcHHHHHHHHHH------HHHCCCHHHHHHHHHHhhhc--cCCh-HH-----
Confidence            5688999999985       22211 11144556666666      88889999998888765433  1211 11     


Q ss_pred             HHHHHhhhcCCCCcccccccccccCCccchHHH--HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 002846          328 LDGRSNLERGPDDQSRKKDWSIDNQDADEIRLS--EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDM  405 (874)
Q Consensus       328 ~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~--~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~  405 (874)
                                                  ..+..  .+...+...+|...|++..... +-+...+..+-..+...|++++
T Consensus        76 ----------------------------~~~~~~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~  126 (176)
T 2r5s_A           76 ----------------------------KSLIAKLELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEE  126 (176)
T ss_dssp             ----------------------------HHHHHHHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             ----------------------------HHHHHHHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHH
Confidence                                        11111  1112222234678888777643 2357889999999999999999


Q ss_pred             HHHHHHHHHHCCCCC-CcccHHHHHHHHHhCCChhHHHHHHHHHHH
Q 002846          406 AFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLE  450 (874)
Q Consensus       406 A~~l~~~M~~~Gi~P-d~~tYn~LI~a~~k~G~~~~A~~l~~eM~~  450 (874)
                      |...|+++.+..-.+ +...+..+...|...|+.++|...|+....
T Consensus       127 A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          127 ALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            999999988764222 245788889999999999999999987653

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=95.53  E-value=0.13  Score=46.09  Aligned_cols=98  Identities=11%  Similarity=0.009  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002846          387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV  466 (874)
Q Consensus       387 ~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~  466 (874)
                      ...|..+-..+.+.|++++|...|++..+.. +.+...|..+-.+|.+.|++++|...|+...+.. .-+...|..+-.+
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~   81 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA   81 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence            3456777788999999999999999987753 2356778888889999999999999999988754 2246788888889


Q ss_pred             HHhcCCchHHHHHHHHHHhc
Q 002846          467 SVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       467 ~~~~G~~d~A~~ll~~M~~~  486 (874)
                      +...|++++|...|.+....
T Consensus        82 ~~~~~~~~~A~~~~~~al~~  101 (126)
T 3upv_A           82 QIAVKEYASALETLDAARTK  101 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHHHHHHh
Confidence            99999999999999998775

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=95.52  E-value=0.033  Score=51.11  Aligned_cols=130  Identities=14%  Similarity=-0.015  Sum_probs=94.5

Q ss_pred             chHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-CcccH
Q 002846          356 EIRLSEDAKKYAFQRGFEIYEKMCLDEV-PMN----EASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINP-RLRSY  425 (874)
Q Consensus       356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv-~Pd----~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~----Gi~P-d~~tY  425 (874)
                      ..+-..+...|++++|.+.|++.....- .++    ..++..+...+...|++++|...+++....    +-.+ ....+
T Consensus        13 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~   92 (164)
T 3ro3_A           13 GNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSC   92 (164)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence            4555677789999999999988765311 112    247888999999999999999999886643    1111 14456


Q ss_pred             HHHHHHHHhCCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 002846          426 GPALSVFCNNGDVDKACSVEEHMLEH----GVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRT  485 (874)
Q Consensus       426 n~LI~a~~k~G~~~~A~~l~~eM~~~----Gv~P-d~~ty~~LI~~~~~~G~~d~A~~ll~~M~~  485 (874)
                      ..+-..+...|+.++|.+.+++..+.    +-.+ ....+..|-..+...|+.++|...+.+...
T Consensus        93 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A           93 YSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            66777888999999999999887643    2111 134567777788899999999999987654

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=95.51  E-value=0.092  Score=48.11  Aligned_cols=100  Identities=13%  Similarity=0.147  Sum_probs=48.7

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhCCChhHHHHHHHHHHHcC--CCCC----HHHHHHHH
Q 002846          392 AVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHG--VYPE----EPELEALL  464 (874)
Q Consensus       392 ~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd-~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~G--v~Pd----~~ty~~LI  464 (874)
                      -|=..+.+.|++++|+..|++..+.  .|+ ...|+.+=..|.+.|++++|.+.++...+..  ..++    ...|..|=
T Consensus        13 ~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg   90 (127)
T 4gcn_A           13 DLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG   90 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence            3344445555555555555554433  222 3344444445555555555555555443321  1111    12344444


Q ss_pred             HHHHhcCCchHHHHHHHHHHhcCCCCChhHH
Q 002846          465 RVSVEAGKGDRVYYLLHKLRTSVRKVSPSTA  495 (874)
Q Consensus       465 ~~~~~~G~~d~A~~ll~~M~~~~~~~sp~T~  495 (874)
                      .++...|++++|.+.|++-...  .+.|++.
T Consensus        91 ~~~~~~~~~~~A~~~~~kal~~--~~~~~~~  119 (127)
T 4gcn_A           91 NAFQKQNDLSLAVQWFHRSLSE--FRDPELV  119 (127)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence            5556667777777777666554  4555443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=95.51  E-value=0.1  Score=48.48  Aligned_cols=92  Identities=14%  Similarity=-0.049  Sum_probs=43.3

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 002846          392 AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAG  471 (874)
Q Consensus       392 ~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G  471 (874)
                      .+...+...|++++|...|++..... +.+...|..+-..|.+.|++++|...|+...... .-+...|..+-.+|...|
T Consensus        23 ~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g  100 (142)
T 2xcb_A           23 ALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLG  100 (142)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence            34444445555555555555544331 1123333434444445555555555555554432 112334444445555555


Q ss_pred             CchHHHHHHHHHHh
Q 002846          472 KGDRVYYLLHKLRT  485 (874)
Q Consensus       472 ~~d~A~~ll~~M~~  485 (874)
                      ++++|...|+....
T Consensus       101 ~~~~A~~~~~~al~  114 (142)
T 2xcb_A          101 DLDGAESGFYSARA  114 (142)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            55555555555544

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.48  E-value=0.16  Score=46.11  Aligned_cols=93  Identities=10%  Similarity=-0.031  Sum_probs=77.7

Q ss_pred             chHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 002846          356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN----EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV  431 (874)
Q Consensus       356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd----~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a  431 (874)
                      ..+-..+.+.|++++|.++|++....  .|+    ...|..+...|...|++++|...+++..+.. ..+...|..+-..
T Consensus        32 ~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~  108 (148)
T 2dba_A           32 RKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRSQA  108 (148)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHHHH
Confidence            45556778899999999999998875  466    6888999999999999999999999987752 2245677778888


Q ss_pred             HHhCCChhHHHHHHHHHHHc
Q 002846          432 FCNNGDVDKACSVEEHMLEH  451 (874)
Q Consensus       432 ~~k~G~~~~A~~l~~eM~~~  451 (874)
                      |...|+.++|...|+...+.
T Consensus       109 ~~~~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A          109 LEKLGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             HHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHc
Confidence            99999999999999998774

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=95.48  E-value=0.11  Score=46.99  Aligned_cols=93  Identities=10%  Similarity=0.008  Sum_probs=78.2

Q ss_pred             chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhC
Q 002846          356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN  435 (874)
Q Consensus       356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~  435 (874)
                      ..+-..+.+.|++++|...|+...... +.+...|..+..++...|++++|...+++..+.. .-+...|..+-..|...
T Consensus        13 ~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~   90 (137)
T 3q49_B           13 KEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEM   90 (137)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHH
Confidence            455567889999999999999887754 3467899999999999999999999999988763 23466778888889999


Q ss_pred             CChhHHHHHHHHHHH
Q 002846          436 GDVDKACSVEEHMLE  450 (874)
Q Consensus       436 G~~~~A~~l~~eM~~  450 (874)
                      |++++|...|....+
T Consensus        91 ~~~~~A~~~~~~a~~  105 (137)
T 3q49_B           91 ESYDEAIANLQRAYS  105 (137)
T ss_dssp             TCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHH
Confidence            999999999998765

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=95.42  E-value=0.83  Score=45.47  Aligned_cols=86  Identities=15%  Similarity=0.002  Sum_probs=52.9

Q ss_pred             cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhC-C--
Q 002846          365 KYAFQRGFEIYEKMCLDEVP-MNEASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN-G--  436 (874)
Q Consensus       365 ~g~~~~A~~lf~~M~~~Gv~-Pd~~tyn~LI~~~~~----~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~-G--  436 (874)
                      .++.++|++.|++..+.|.. -+...+..|-..|..    .++.++|+..|++-.+.+  .+...+..|=..|... |  
T Consensus       102 ~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~  179 (212)
T 3rjv_A          102 ATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAEYWAGMMFQQGEKGF  179 (212)
T ss_dssp             SCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHHHHHHHHHHHCBTTT
T ss_pred             ccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCC
Confidence            45777888888777766521 015667777777777    677888888887776651  2222344444444432 2  


Q ss_pred             ---ChhHHHHHHHHHHHcC
Q 002846          437 ---DVDKACSVEEHMLEHG  452 (874)
Q Consensus       437 ---~~~~A~~l~~eM~~~G  452 (874)
                         +.++|...|+...+.|
T Consensus       180 ~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          180 IEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             BCCCHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHcC
Confidence               6777777776666554

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=95.41  E-value=0.12  Score=47.95  Aligned_cols=90  Identities=14%  Similarity=0.073  Sum_probs=75.4

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChh
Q 002846          360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD  439 (874)
Q Consensus       360 ~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~  439 (874)
                      ..+.+.|++++|..+|+...... +.+...|..+-.+|...|++++|...|++..... +-+...|..+-.+|...|+.+
T Consensus        26 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~  103 (142)
T 2xcb_A           26 FNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLGDLD  103 (142)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHH
Confidence            45678899999999999988754 3477889999999999999999999999988763 234566777888899999999


Q ss_pred             HHHHHHHHHHHc
Q 002846          440 KACSVEEHMLEH  451 (874)
Q Consensus       440 ~A~~l~~eM~~~  451 (874)
                      +|...|+...+.
T Consensus       104 ~A~~~~~~al~~  115 (142)
T 2xcb_A          104 GAESGFYSARAL  115 (142)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999988764

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=95.41  E-value=0.12  Score=48.82  Aligned_cols=99  Identities=11%  Similarity=-0.087  Sum_probs=74.5

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 002846          386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR  465 (874)
Q Consensus       386 d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~  465 (874)
                      +...+..+-..+...|++++|...|+...... +.+...|..+-..|...|++++|...|+...... .-+...|..+-.
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~   97 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE   97 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence            34566677778888899999999998877652 2245566666677788899999999998887653 124567777778


Q ss_pred             HHHhcCCchHHHHHHHHHHhc
Q 002846          466 VSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       466 ~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      +|...|+.++|...|++....
T Consensus        98 ~~~~~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A           98 CLLQXGELAEAESGLFLAQEL  118 (148)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHH
Confidence            888899999999999887765

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=95.33  E-value=0.087  Score=56.16  Aligned_cols=127  Identities=12%  Similarity=-0.065  Sum_probs=96.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc----ccHHHHHHHHH
Q 002846          358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL----RSYGPALSVFC  433 (874)
Q Consensus       358 lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~----~tYn~LI~a~~  433 (874)
                      ....+...|++++|.++|+.+...+  |+....-.+-..+.+.+++++|+..|+.....   |+.    ..+..+=.++.
T Consensus       108 yA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~---~d~~~~~~a~~~LG~al~  182 (282)
T 4f3v_A          108 FAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW---PDKFLAGAAGVAHGVAAA  182 (282)
T ss_dssp             HHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC---SCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc---CCcccHHHHHHHHHHHHH
Confidence            4567788999999999999988754  65556666667899999999999999744332   321    23444566788


Q ss_pred             hCCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCC
Q 002846          434 NNGDVDKACSVEEHMLEHGVYPE--EPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVS  491 (874)
Q Consensus       434 k~G~~~~A~~l~~eM~~~Gv~Pd--~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~s  491 (874)
                      ..|++++|...|++.......|.  ......+-.++.+.|+.++|..+|+++...  .|.
T Consensus       183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~  240 (282)
T 4f3v_A          183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPE  240 (282)
T ss_dssp             HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCC
T ss_pred             HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc
Confidence            99999999999999885443354  234455556678899999999999999987  555

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=95.31  E-value=0.28  Score=49.00  Aligned_cols=122  Identities=10%  Similarity=0.011  Sum_probs=97.3

Q ss_pred             chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----ChhHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 002846          356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG----DGDMAFDMVKRMKSLGINPRLRSYGPALSV  431 (874)
Q Consensus       356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G----~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a  431 (874)
                      ..|=..|...++.++|++.|++..+.|   +...+..|-..|.. +    +.++|...|++..+.|   +...+..|=..
T Consensus        22 ~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~   94 (212)
T 3rjv_A           22 YYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLARV   94 (212)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence            344456667899999999999998887   67778888888887 6    8999999999988775   34455555555


Q ss_pred             HHh----CCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHh----cCCchHHHHHHHHHHhc
Q 002846          432 FCN----NGDVDKACSVEEHMLEHGVYPE---EPELEALLRVSVE----AGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       432 ~~k----~G~~~~A~~l~~eM~~~Gv~Pd---~~ty~~LI~~~~~----~G~~d~A~~ll~~M~~~  486 (874)
                      |..    .++.++|.+.|+...+.|  |.   ...+..|=..|..    .++.++|..+|++-.+.
T Consensus        95 y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~  158 (212)
T 3rjv_A           95 LVNRQAGATDVAHAITLLQDAARDS--ESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL  158 (212)
T ss_dssp             HTCGGGSSCCHHHHHHHHHHHTSST--TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred             HHcCCCCccCHHHHHHHHHHHHHcC--CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence            655    789999999999988876  43   6777777777777    77899999999998776

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=95.28  E-value=0.14  Score=48.19  Aligned_cols=94  Identities=13%  Similarity=0.102  Sum_probs=77.9

Q ss_pred             chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhC
Q 002846          356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN  435 (874)
Q Consensus       356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~  435 (874)
                      ..+-..+.+.|++++|...|+...... +.+...|..+-.+|...|++++|...|++..... +-+...|..+-.+|...
T Consensus        25 ~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~  102 (148)
T 2vgx_A           25 YSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLLQX  102 (148)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHc
Confidence            344567788999999999999988754 3478889999999999999999999999988753 22456777788889999


Q ss_pred             CChhHHHHHHHHHHHc
Q 002846          436 GDVDKACSVEEHMLEH  451 (874)
Q Consensus       436 G~~~~A~~l~~eM~~~  451 (874)
                      |+.++|...|+...+.
T Consensus       103 g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A          103 GELAEAESGLFLAQEL  118 (148)
T ss_dssp             TCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            9999999999988764

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=95.23  E-value=1.7  Score=46.70  Aligned_cols=220  Identities=10%  Similarity=0.028  Sum_probs=145.1

Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcccCCCcccCCC--CHHHHHHHHhhcccCchhhhhcCCCCchhhh
Q 002846          205 GDVMGAIRLYDKAQREGIKLGQY-HYNVLLYLCSSAAVGVVKPAKSG--SGMRTLDTFEVSTMNSTELGDSRDMDNNGQL  281 (874)
Q Consensus       205 G~~~~Al~lf~~M~~~Gi~pd~~-tyn~LL~a~~~~~~~~~~~~k~G--~~~~A~~vf~v~~~~s~em~~~~gi~d~vty  281 (874)
                      ..-++|+.+++.+...  .|+.+ .||.-=.++.          ..|  .+++++..++       .+... .-.+...|
T Consensus        47 e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~----------~l~~~~~~eeL~~~~-------~~L~~-nPk~y~aW  106 (306)
T 3dra_A           47 EYSERALHITELGINE--LASHYTIWIYRFNILK----------NLPNRNLYDELDWCE-------EIALD-NEKNYQIW  106 (306)
T ss_dssp             CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH----------TCTTSCHHHHHHHHH-------HHHHH-CTTCCHHH
T ss_pred             CCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHH----------HcccccHHHHHHHHH-------HHHHH-CcccHHHH
Confidence            3446899999999864  35544 4555444444          445  8999999986       33322 22233445


Q ss_pred             HhhhcCcccChhh----hhc---CChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCc
Q 002846          282 DYGSSPMIDKLES----NSS---YRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDA  354 (874)
Q Consensus       282 n~LI~~~~~~~~~----~~~---g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~  354 (874)
                      +.--..      +    ...   +++++++.+++.+....    .                      -.|+.|.+.    
T Consensus       107 ~~R~~i------L~~~~~~l~~~~~~~~EL~~~~~~l~~~----p----------------------kny~aW~~R----  150 (306)
T 3dra_A          107 NYRQLI------IGQIMELNNNDFDPYREFDILEAMLSSD----P----------------------KNHHVWSYR----  150 (306)
T ss_dssp             HHHHHH------HHHHHHHTTTCCCTHHHHHHHHHHHHHC----T----------------------TCHHHHHHH----
T ss_pred             HHHHHH------HHHHHHhccccCCHHHHHHHHHHHHHhC----C----------------------CCHHHHHHH----
Confidence            543333      2    233   67788888888887752    1                      122222222    


Q ss_pred             cchHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------hhHHHHHHHHHHHCCCCCCcccHH
Q 002846          355 DEIRLSEDAKKYAFQ--RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD------GDMAFDMVKRMKSLGINPRLRSYG  426 (874)
Q Consensus       355 ~n~lI~~~~k~g~~~--~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~------~d~A~~l~~~M~~~Gi~Pd~~tYn  426 (874)
                       .-++   .+.|..+  ++++.++.|.+.. .-|-..|+----.+...|.      ++++++.++.+..... -|...|+
T Consensus       151 -~~vl---~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p-~n~SaW~  224 (306)
T 3dra_A          151 -KWLV---DTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCP-QNPSTWN  224 (306)
T ss_dssp             -HHHH---HHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCS-SCHHHHH
T ss_pred             -HHHH---HHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCC-CCccHHH
Confidence             2222   3345555  8999999999865 3477888877777777776      8899999998887633 4667777


Q ss_pred             HHHHHHHhCCChhH-HHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          427 PALSVFCNNGDVDK-ACSVEEHMLEHG--VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       427 ~LI~a~~k~G~~~~-A~~l~~eM~~~G--v~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      -+-..+.+.|+..+ +.++...+.+.+  -..+...+..|.+.|++.|+.++|.++++.+.+.
T Consensus       225 y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~  287 (306)
T 3dra_A          225 YLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSK  287 (306)
T ss_dssp             HHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence            77777777777444 455666554432  1357788999999999999999999999999874

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=95.11  E-value=0.074  Score=51.54  Aligned_cols=122  Identities=12%  Similarity=-0.028  Sum_probs=88.3

Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-CcccHHHHHHHHHhCCC
Q 002846          363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINP-RLRSYGPALSVFCNNGD  437 (874)
Q Consensus       363 ~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~----Gi~P-d~~tYn~LI~a~~k~G~  437 (874)
                      ...|++++|.++++.+.. .......++..+-..+...|++++|...+++....    |..| ...++..+-..|...|+
T Consensus         3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            457899999996655543 22235678899999999999999999999887652    2222 24566777778889999


Q ss_pred             hhHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 002846          438 VDKACSVEEHMLEH----GVYP--EEPELEALLRVSVEAGKGDRVYYLLHKLRT  485 (874)
Q Consensus       438 ~~~A~~l~~eM~~~----Gv~P--d~~ty~~LI~~~~~~G~~d~A~~ll~~M~~  485 (874)
                      +++|...+++....    +-.|  ....+..+-..+...|++++|...+.+...
T Consensus        82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  135 (203)
T 3gw4_A           82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV  135 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            99999999886653    2111  234567777788899999999999988764

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=95.11  E-value=0.17  Score=49.51  Aligned_cols=118  Identities=8%  Similarity=-0.085  Sum_probs=82.2

Q ss_pred             hHHHHHHhcCCHHHHHHHHHHHHHCCC-CC---C-----------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 002846          357 IRLSEDAKKYAFQRGFEIYEKMCLDEV-PM---N-----------EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR  421 (874)
Q Consensus       357 ~lI~~~~k~g~~~~A~~lf~~M~~~Gv-~P---d-----------~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd  421 (874)
                      .+-..+.+.|++++|.++|++.....- .|   .           ..+|..+..+|...|++++|...++...... ..+
T Consensus        43 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~  121 (198)
T 2fbn_A           43 EEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNN  121 (198)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccc
Confidence            334567788999999999998886421 12   1           2678888888889999999999998887652 234


Q ss_pred             cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCchHHH
Q 002846          422 LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVY  477 (874)
Q Consensus       422 ~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~P-d~~ty~~LI~~~~~~G~~d~A~  477 (874)
                      ...|..+-.+|...|++++|...|+...+..  | +...+..|-..+...++.+++.
T Consensus       122 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          122 VKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDIRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHHHHHHHH
Confidence            5667777778888889999988888877643  4 4455555555555555444444

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=95.05  E-value=0.7  Score=52.09  Aligned_cols=120  Identities=13%  Similarity=0.054  Sum_probs=82.4

Q ss_pred             chHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CChhHHHHHHHHHHHCCCCCCcccHHHH
Q 002846          356 EIRLSEDAKKY---AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM----GDGDMAFDMVKRMKSLGINPRLRSYGPA  428 (874)
Q Consensus       356 n~lI~~~~k~g---~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~----G~~d~A~~l~~~M~~~Gi~Pd~~tYn~L  428 (874)
                      ..|-..|.+.|   +.++|++.|+.-.+.| .++...+..|-..|...    ++.++|+..|++.. .|.   ...+..|
T Consensus       180 ~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~---~~a~~~L  254 (452)
T 3e4b_A          180 VELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGY---PASWVSL  254 (452)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGS---THHHHHH
T ss_pred             HHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCC---HHHHHHH
Confidence            45556666778   8889999998888877 34455545566666544    68889999998876 332   2333333


Q ss_pred             HHH-H--HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----CchHHHHHHHHHH
Q 002846          429 LSV-F--CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAG-----KGDRVYYLLHKLR  484 (874)
Q Consensus       429 I~a-~--~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G-----~~d~A~~ll~~M~  484 (874)
                      =.. |  ...++.++|.+.|+...+.|   +...+..|=..|. .|     +.++|...|.+-.
T Consensus       255 g~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa  314 (452)
T 3e4b_A          255 AQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV  314 (452)
T ss_dssp             HHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence            333 2  35789999999999888877   5566666655555 45     7888888888766

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=95.04  E-value=0.024  Score=50.88  Aligned_cols=86  Identities=10%  Similarity=-0.021  Sum_probs=53.3

Q ss_pred             cCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHH
Q 002846          365 KYAFQRGFEIYEKMCLDEV--PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKAC  442 (874)
Q Consensus       365 ~g~~~~A~~lf~~M~~~Gv--~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~  442 (874)
                      .|++++|...|++....+.  +-+..+|..|-..|...|++++|...|++..+..- -+...|..+-.+|.+.|+.++|.
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHHH
Confidence            4666777777777766531  22345667777777777777777777777765521 23455555666677777777777


Q ss_pred             HHHHHHHHc
Q 002846          443 SVEEHMLEH  451 (874)
Q Consensus       443 ~l~~eM~~~  451 (874)
                      ..|+.....
T Consensus        82 ~~~~~al~~   90 (117)
T 3k9i_A           82 ELLLKIIAE   90 (117)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            777766553

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=95.03  E-value=0.34  Score=45.73  Aligned_cols=94  Identities=11%  Similarity=0.079  Sum_probs=79.1

Q ss_pred             chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhC
Q 002846          356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN  435 (874)
Q Consensus       356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~  435 (874)
                      ..+-..+.+.|++++|.+.|++..... +-+...|..+..+|...|++++|...|++..+.. .-+...|..+-..|...
T Consensus        15 ~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~   92 (164)
T 3sz7_A           15 KSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLARFDM   92 (164)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence            444567788999999999999988754 3378899999999999999999999999988763 22467788888899999


Q ss_pred             CChhHHHHHHHHHHHc
Q 002846          436 GDVDKACSVEEHMLEH  451 (874)
Q Consensus       436 G~~~~A~~l~~eM~~~  451 (874)
                      |++++|...|+...+.
T Consensus        93 g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           93 ADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             TCHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHh
Confidence            9999999999988764

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.00  E-value=1.4  Score=48.26  Aligned_cols=121  Identities=7%  Similarity=0.003  Sum_probs=81.2

Q ss_pred             cCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CC--CC-CcccHHHHHHHHHh
Q 002846          365 KYAFQRGFEIYEKMCL----DEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSL--GI--NP-RLRSYGPALSVFCN  434 (874)
Q Consensus       365 ~g~~~~A~~lf~~M~~----~Gv~Pd-~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~--Gi--~P-d~~tYn~LI~a~~k  434 (874)
                      .|..+.|.+++.....    .+..+. ..++..|...|...|++++|..++++....  +.  .| ...+|..++..|..
T Consensus       108 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (434)
T 4b4t_Q          108 PDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHK  187 (434)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence            4567777777765543    333333 456778888888999999999988876543  11  11 13467778888888


Q ss_pred             CCChhHHHHHHHHHHHc--CCC-C-C--HHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 002846          435 NGDVDKACSVEEHMLEH--GVY-P-E--EPELEALLRVSVEAGKGDRVYYLLHKLRT  485 (874)
Q Consensus       435 ~G~~~~A~~l~~eM~~~--Gv~-P-d--~~ty~~LI~~~~~~G~~d~A~~ll~~M~~  485 (874)
                      .|++++|..+++.....  .+. | .  ...|..+...+...|++++|...|.+...
T Consensus       188 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          188 LRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             hCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            99999999888776432  121 2 1  24455666666778889998888776643

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=94.93  E-value=0.31  Score=43.34  Aligned_cols=95  Identities=9%  Similarity=-0.019  Sum_probs=74.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----cccHHHHHHH
Q 002846          359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNE---ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LRSYGPALSV  431 (874)
Q Consensus       359 I~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~---~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd----~~tYn~LI~a  431 (874)
                      -..+.+.|++++|.+.|+......- .+.   ..+..+-.++...|++++|...|++.....  |+    ...+..+-..
T Consensus         9 a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~~   85 (129)
T 2xev_A            9 AFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGLS   85 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHH
Confidence            3456789999999999999887531 122   477788889999999999999999988753  44    3446667778


Q ss_pred             HHhCCChhHHHHHHHHHHHcCCCCCHH
Q 002846          432 FCNNGDVDKACSVEEHMLEHGVYPEEP  458 (874)
Q Consensus       432 ~~k~G~~~~A~~l~~eM~~~Gv~Pd~~  458 (874)
                      |...|+.++|...|+.+....  |+..
T Consensus        86 ~~~~g~~~~A~~~~~~~~~~~--p~~~  110 (129)
T 2xev_A           86 QYGEGKNTEAQQTLQQVATQY--PGSD  110 (129)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS--TTSH
T ss_pred             HHHcCCHHHHHHHHHHHHHHC--CCCh
Confidence            889999999999999988754  5543

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=94.91  E-value=0.19  Score=45.98  Aligned_cols=100  Identities=12%  Similarity=0.142  Sum_probs=76.0

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCC----cccHHHHHHHHH
Q 002846          360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG--INPR----LRSYGPALSVFC  433 (874)
Q Consensus       360 ~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~G--i~Pd----~~tYn~LI~a~~  433 (874)
                      ..+.+.|++++|++.|++..+.. +-+..+|+.+-.+|...|++++|++.+++..+..  ..++    ..+|..+=..+.
T Consensus        16 ~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~   94 (127)
T 4gcn_A           16 NAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQ   94 (127)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH
Confidence            56778999999999999988753 3467889999999999999999999999876542  1111    124555556677


Q ss_pred             hCCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 002846          434 NNGDVDKACSVEEHMLEHGVYPEEPELEA  462 (874)
Q Consensus       434 k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~  462 (874)
                      ..|++++|.+.|+.....  .||..+...
T Consensus        95 ~~~~~~~A~~~~~kal~~--~~~~~~~~~  121 (127)
T 4gcn_A           95 KQNDLSLAVQWFHRSLSE--FRDPELVKK  121 (127)
T ss_dssp             HTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence            889999999999987763  467655443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.75  E-value=0.3  Score=53.64  Aligned_cols=175  Identities=7%  Similarity=-0.131  Sum_probs=114.1

Q ss_pred             hhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHH
Q 002846          294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE  373 (874)
Q Consensus       294 ~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~  373 (874)
                      +.+.|++++|.+.|.+.....-.........+.........+      ..+           ..|...|.+.|++++|.+
T Consensus        14 l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~------~al-----------~~l~~~y~~~~~~~~a~~   76 (434)
T 4b4t_Q           14 LVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQE------TSI-----------LELGQLYVTMGAKDKLRE   76 (434)
T ss_dssp             HHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHH------HHH-----------HHHHHHHHHHTCHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHH------HHH-----------HHHHHHHHHCCCHHHHHH
Confidence            567899999999999988764322221111111000000000      001           567788999999999999


Q ss_pred             HHHHHHHC-CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCC-cccHHHHHHHHHhCCChhHHHH
Q 002846          374 IYEKMCLD-EVPMNE----ASLTAVGRMAMSMGDGDMAFDMVKRMKS----LGINPR-LRSYGPALSVFCNNGDVDKACS  443 (874)
Q Consensus       374 lf~~M~~~-Gv~Pd~----~tyn~LI~~~~~~G~~d~A~~l~~~M~~----~Gi~Pd-~~tYn~LI~a~~k~G~~~~A~~  443 (874)
                      ++..+... +-.++.    .+.+.+-..+...|+.+.|..++.+...    .+..+. ..++..+-..|...|++++|..
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  156 (434)
T 4b4t_Q           77 FIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLA  156 (434)
T ss_dssp             HHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHH
Confidence            99877652 112222    1223333334457889999999887653    233232 4567778889999999999999


Q ss_pred             HHHHHHHc--CC--CC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 002846          444 VEEHMLEH--GV--YP-EEPELEALLRVSVEAGKGDRVYYLLHKLRT  485 (874)
Q Consensus       444 l~~eM~~~--Gv--~P-d~~ty~~LI~~~~~~G~~d~A~~ll~~M~~  485 (874)
                      ++++....  +.  .+ ....|..++..|...|++++|..++++...
T Consensus       157 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~  203 (434)
T 4b4t_Q          157 LINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAART  203 (434)
T ss_dssp             HHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            99987643  21  12 245788889999999999999999988654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=94.75  E-value=0.13  Score=55.69  Aligned_cols=143  Identities=10%  Similarity=-0.018  Sum_probs=99.7

Q ss_pred             hhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchH
Q 002846          279 GQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIR  358 (874)
Q Consensus       279 vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~l  358 (874)
                      ..|..+=..      +.+.|++++|...|.+.....  |+...+..   +++..+ ..  -....|           ..+
T Consensus       148 ~~~~~~g~~------~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~---~~~~~~-~~--~~~~~~-----------~nl  202 (336)
T 1p5q_A          148 TIVKERGTV------YFKEGKYKQALLQYKKIVSWL--EYESSFSN---EEAQKA-QA--LRLASH-----------LNL  202 (336)
T ss_dssp             HHHHHHHHH------HHHHTCHHHHHHHHHHHHHHT--TTCCCCCS---HHHHHH-HH--HHHHHH-----------HHH
T ss_pred             HHHHHHHHH------HHHCCCHHHHHHHHHHHHHHh--hccccCCh---HHHHHH-HH--HHHHHH-----------HHH
Confidence            345555555      888999999999999887753  33211100   000000 00  001122           566


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CcccHHHHHHHHHhCCC
Q 002846          359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGD  437 (874)
Q Consensus       359 I~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~P-d~~tYn~LI~a~~k~G~  437 (874)
                      -..|.+.|++++|+..|++..... +-+...|..+-.+|...|++++|...|++..+.  .| +...+..+-..+.+.|+
T Consensus       203 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~  279 (336)
T 1p5q_A          203 AMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRR  279 (336)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHH
Confidence            678889999999999999988754 347889999999999999999999999998875  34 35567777778888888


Q ss_pred             hhHH-HHHHHHHH
Q 002846          438 VDKA-CSVEEHML  449 (874)
Q Consensus       438 ~~~A-~~l~~eM~  449 (874)
                      .++| ..+|..|.
T Consensus       280 ~~~a~~~~~~~~~  292 (336)
T 1p5q_A          280 QLAREKKLYANMF  292 (336)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            8888 44666554

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=94.65  E-value=0.42  Score=47.40  Aligned_cols=117  Identities=9%  Similarity=0.011  Sum_probs=88.2

Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHH----------------HHHHHHhcCChhHHHHHHHHHHHCCCCC-Cc
Q 002846          361 EDAKKYAFQRGFEIYEKMCLDEVPMN-EASLTA----------------VGRMAMSMGDGDMAFDMVKRMKSLGINP-RL  422 (874)
Q Consensus       361 ~~~k~g~~~~A~~lf~~M~~~Gv~Pd-~~tyn~----------------LI~~~~~~G~~d~A~~l~~~M~~~Gi~P-d~  422 (874)
                      .+...|++++|...|++.....  |+ ...|..                +-..|.+.|++++|...|++..+.  .| +.
T Consensus        13 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~   88 (208)
T 3urz_A           13 AAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--APNNV   88 (208)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCH
Confidence            4567899999999999988753  43 345555                888999999999999999998876  34 46


Q ss_pred             ccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCC--chHHHHHHHHH
Q 002846          423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGK--GDRVYYLLHKL  483 (874)
Q Consensus       423 ~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~P-d~~ty~~LI~~~~~~G~--~d~A~~ll~~M  483 (874)
                      ..|..+-..|...|+.++|...|+...+..  | +...|..|-..|...|.  .+.+...+...
T Consensus        89 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~  150 (208)
T 3urz_A           89 DCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLTAEQEKKKLETDYKKL  150 (208)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            677888888999999999999999998854  5 46677777777655553  33445555444

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=94.41  E-value=0.15  Score=46.24  Aligned_cols=88  Identities=15%  Similarity=0.175  Sum_probs=60.5

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CcccHHHHHHHHHhCCCh
Q 002846          360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDV  438 (874)
Q Consensus       360 ~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~P-d~~tYn~LI~a~~k~G~~  438 (874)
                      ..+.+.|++++|...|+...... +-+...|..+-.++...|++++|...|++..+.  .| +...+..+-..|...|+.
T Consensus        25 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~~~g~~  101 (121)
T 1hxi_A           25 LSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEHNA  101 (121)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence            45667778888888887777643 235667777777777788888888887776654  23 344555566667777777


Q ss_pred             hHHHHHHHHHHH
Q 002846          439 DKACSVEEHMLE  450 (874)
Q Consensus       439 ~~A~~l~~eM~~  450 (874)
                      ++|...|+...+
T Consensus       102 ~~A~~~~~~al~  113 (121)
T 1hxi_A          102 NAALASLRAWLL  113 (121)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHH
Confidence            777777776654

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=94.33  E-value=0.12  Score=59.11  Aligned_cols=117  Identities=12%  Similarity=0.035  Sum_probs=88.1

Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhH
Q 002846          361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK  440 (874)
Q Consensus       361 ~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~  440 (874)
                      .+.+.|++++|.+.|++..+.. +-+..+|..+..+|.+.|++++|...+++..+.. .-+...|..+-.+|...|+.++
T Consensus        15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e   92 (477)
T 1wao_1           15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA   92 (477)
T ss_dssp             STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence            4557899999999999887753 3358899999999999999999999999988763 2345677778888999999999


Q ss_pred             HHHHHHHHHHcCCCCC-HHHHHHHHHH--HHhcCCchHHHHHHH
Q 002846          441 ACSVEEHMLEHGVYPE-EPELEALLRV--SVEAGKGDRVYYLLH  481 (874)
Q Consensus       441 A~~l~~eM~~~Gv~Pd-~~ty~~LI~~--~~~~G~~d~A~~ll~  481 (874)
                      |.+.|++..+..  |+ ...+..+-.+  +.+.|++++|..+++
T Consensus        93 A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           93 ALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            999999987753  32 2333334333  778899999999887

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=94.21  E-value=0.24  Score=44.85  Aligned_cols=93  Identities=13%  Similarity=0.005  Sum_probs=76.3

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 002846          390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVS  467 (874)
Q Consensus       390 yn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~P-d~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~P-d~~ty~~LI~~~  467 (874)
                      +-.+...+.+.|++++|...|++..+.  .| +...|..+=..+...|+.++|...|+...+..  | +...+..|-..+
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~la~~~   95 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSH   95 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence            444567788999999999999998875  35 45666667778889999999999999988754  5 567788888899


Q ss_pred             HhcCCchHHHHHHHHHHhc
Q 002846          468 VEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       468 ~~~G~~d~A~~ll~~M~~~  486 (874)
                      ...|+.++|...|++....
T Consensus        96 ~~~g~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           96 TNEHNANAALASLRAWLLS  114 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHC-
T ss_pred             HHcCCHHHHHHHHHHHHHh
Confidence            9999999999999998765

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=93.91  E-value=1.5  Score=49.46  Aligned_cols=112  Identities=8%  Similarity=-0.022  Sum_probs=79.8

Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----ChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHh----
Q 002846          364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG-----DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN----  434 (874)
Q Consensus       364 k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G-----~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k----  434 (874)
                      ..++.++|++.|++-.+.|   +...+..|-..|. .|     ++++|...|++-. .|   +...+..|=..|..    
T Consensus       263 ~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~  334 (452)
T 3e4b_A          263 ELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLG  334 (452)
T ss_dssp             GGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTS
T ss_pred             CCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCC
Confidence            4789999999999999888   6777888887777 55     9999999998766 33   33444444444444    


Q ss_pred             CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCchHHHHHHHHHHhc
Q 002846          435 NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE----AGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       435 ~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~----~G~~d~A~~ll~~M~~~  486 (874)
                      ..+.++|...|..-.+.|..   ..+..|-..|..    ..+.++|...|..-...
T Consensus       335 ~~d~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~  387 (452)
T 3e4b_A          335 KVYPQKALDHLLTAARNGQN---SADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ  387 (452)
T ss_dssp             SCCHHHHHHHHHHHHTTTCT---THHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred             CcCHHHHHHHHHHHHhhChH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence            23899999999998887742   233334334432    34778888888888776

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=93.73  E-value=0.12  Score=47.31  Aligned_cols=129  Identities=15%  Similarity=0.034  Sum_probs=89.1

Q ss_pred             hhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHH
Q 002846          294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE  373 (874)
Q Consensus       294 ~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~  373 (874)
                      +...|++++|...+.+.....-..+.      ....+           ..+           ..+-..+...|++++|.+
T Consensus        19 ~~~~~~~~~A~~~~~~al~~~~~~~~------~~~~~-----------~~~-----------~~l~~~~~~~g~~~~A~~   70 (164)
T 3ro3_A           19 HYLLGNFRDAVIAHEQRLLIAKEFGD------KAAER-----------IAY-----------SNLGNAYIFLGEFETASE   70 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHTC------HHHHH-----------HHH-----------HHHHHHHHHTTCHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHhCC------chHHH-----------HHH-----------HHHHHHHHHcCCHHHHHH
Confidence            77889999999999887654100000      00000           112           556677888999999999


Q ss_pred             HHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-CcccHHHHHHHHHhCCChhHHHH
Q 002846          374 IYEKMCLD----EVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINP-RLRSYGPALSVFCNNGDVDKACS  443 (874)
Q Consensus       374 lf~~M~~~----Gv~P-d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~----Gi~P-d~~tYn~LI~a~~k~G~~~~A~~  443 (874)
                      .|++....    +-.+ ...++..+...+...|++++|...+++....    +..+ ....+..+-..|...|+.++|.+
T Consensus        71 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  150 (164)
T 3ro3_A           71 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH  150 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHH
Confidence            99886652    1111 1457788889999999999999999877643    2111 13456667778889999999999


Q ss_pred             HHHHHHH
Q 002846          444 VEEHMLE  450 (874)
Q Consensus       444 l~~eM~~  450 (874)
                      .+++..+
T Consensus       151 ~~~~a~~  157 (164)
T 3ro3_A          151 FAEKHLE  157 (164)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9987654

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=93.59  E-value=1.3  Score=43.09  Aligned_cols=126  Identities=14%  Similarity=0.010  Sum_probs=85.5

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC--------------cc
Q 002846          359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI-NPR--------------LR  423 (874)
Q Consensus       359 I~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi-~Pd--------------~~  423 (874)
                      +.+....|.+++|.++++.-... ..-....+..+-..+...|++++|...|++.....- .|+              ..
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~   89 (198)
T 2fbn_A           11 SSGRENLYFQGAKKSIYDYTDEE-KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS   89 (198)
T ss_dssp             -----------CCCSGGGCCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhccccCchhhCCHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence            33444445555555555421111 001234567778888999999999999999887521 121              15


Q ss_pred             cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       424 tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      .|..+-.+|.+.|++++|...++...... ..+...|..+-.+|...|++++|...|.+....
T Consensus        90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  151 (198)
T 2fbn_A           90 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL  151 (198)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            67777788889999999999999988753 246778888888999999999999999998876

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=93.55  E-value=0.083  Score=47.24  Aligned_cols=87  Identities=17%  Similarity=0.072  Sum_probs=67.5

Q ss_pred             hcCChhHHHHHHHHHHHCCC--CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHH
Q 002846          399 SMGDGDMAFDMVKRMKSLGI--NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRV  476 (874)
Q Consensus       399 ~~G~~d~A~~l~~~M~~~Gi--~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A  476 (874)
                      ..|++++|...|++..+.+.  +-+...|..+-..|...|++++|...|+...+.. .-+...+..+-.++.+.|+.++|
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A   80 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG   80 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence            46889999999999887641  2235667778888999999999999999998764 22467788888899999999999


Q ss_pred             HHHHHHHHhc
Q 002846          477 YYLLHKLRTS  486 (874)
Q Consensus       477 ~~ll~~M~~~  486 (874)
                      ...|.+....
T Consensus        81 ~~~~~~al~~   90 (117)
T 3k9i_A           81 VELLLKIIAE   90 (117)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998776

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=93.31  E-value=0.4  Score=54.76  Aligned_cols=116  Identities=7%  Similarity=-0.007  Sum_probs=86.3

Q ss_pred             hhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHH
Q 002846          294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE  373 (874)
Q Consensus       294 ~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~  373 (874)
                      +.+.|++++|.+.|++..+.  .|+.                     ...|           ..+-..|.+.|++++|.+
T Consensus        16 ~~~~g~~~~A~~~~~~Al~~--~p~~---------------------~~~~-----------~~lg~~~~~~g~~~~A~~   61 (477)
T 1wao_1           16 YFKAKDYENAIKFYSQAIEL--NPSN---------------------AIYY-----------GNRSLAYLRTECYGYALG   61 (477)
T ss_dssp             TTTTTCHHHHHHHHHHHHHH--CTTC---------------------HHHH-----------HHHHHHHHHTTCHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHh--CCcc---------------------HHHH-----------HHHHHHHHHhcCHHHHHH
Confidence            77889999999999988775  2322                     1122           667778889999999999


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-cccHHHHHHH--HHhCCChhHHHHHHH
Q 002846          374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSV--FCNNGDVDKACSVEE  446 (874)
Q Consensus       374 lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd-~~tYn~LI~a--~~k~G~~~~A~~l~~  446 (874)
                      .|++..+.. +-+..+|..+-.+|...|++++|.+.|++..+.  .|+ ...+..+-.+  +.+.|++++|.++++
T Consensus        62 ~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           62 DATRAIELD-KKYIKGYYRRAASNMALGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            999988764 346788999999999999999999999998775  343 3344444444  778899999999988

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=93.14  E-value=0.71  Score=48.35  Aligned_cols=88  Identities=10%  Similarity=0.026  Sum_probs=46.6

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CcccHHHHHHHHHhCCCh
Q 002846          360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDV  438 (874)
Q Consensus       360 ~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~P-d~~tYn~LI~a~~k~G~~  438 (874)
                      ..+.+.|++++|...|++..... +-+...|..+-.+|.+.|++++|...+++..+.  .| +...|..+-.+|...|+.
T Consensus        12 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~   88 (281)
T 2c2l_A           12 NRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQCQLEMESY   88 (281)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence            34445566666666665555432 124555555566666666666666666555433  22 233444455555555666


Q ss_pred             hHHHHHHHHHHH
Q 002846          439 DKACSVEEHMLE  450 (874)
Q Consensus       439 ~~A~~l~~eM~~  450 (874)
                      ++|...|....+
T Consensus        89 ~~A~~~~~~al~  100 (281)
T 2c2l_A           89 DEAIANLQRAYS  100 (281)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            666655555443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=93.12  E-value=0.19  Score=57.76  Aligned_cols=126  Identities=10%  Similarity=-0.002  Sum_probs=84.9

Q ss_pred             HHHhcCCHHHHHHHHHHHHHC---CCCC---C-HHHHHHHHHHHHhcCChhHHHHHHHHHHHC-----C-CCCC-cccHH
Q 002846          361 EDAKKYAFQRGFEIYEKMCLD---EVPM---N-EASLTAVGRMAMSMGDGDMAFDMVKRMKSL-----G-INPR-LRSYG  426 (874)
Q Consensus       361 ~~~k~g~~~~A~~lf~~M~~~---Gv~P---d-~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~-----G-i~Pd-~~tYn  426 (874)
                      .+...|++++|..++++....   -+-|   + ..+++.|...|...|++++|..++++....     | -.|+ ..+|+
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            355678999999888776542   1222   2 457888999999999999999888876532     2 1233 45778


Q ss_pred             HHHHHHHhCCChhHHHHHHHHHHHc---CCCCCH----HHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          427 PALSVFCNNGDVDKACSVEEHMLEH---GVYPEE----PELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       427 ~LI~a~~k~G~~~~A~~l~~eM~~~---Gv~Pd~----~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      .|=..|...|++++|..++++..+-   -+-||-    .+.+.|-.++...|.+++|..++.++++.
T Consensus       398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA  464 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888899999998888765431   111332    22334444555667788888888887664

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=93.12  E-value=3  Score=44.65  Aligned_cols=226  Identities=8%  Similarity=0.046  Sum_probs=148.1

Q ss_pred             HHhcCChhHHHHHHHHHhhCCCCCCCCCCCC-HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 002846          160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSE-QFQLRVELDMCSKRG--DVMGAIRLYDKAQREGIKLGQYHYNVLLYLC  236 (874)
Q Consensus       160 ~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd-~~tyn~LI~a~~k~G--~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~  236 (874)
                      +.+.....+|+++++.+...        .|+ ...||.-=..+...|  ++++++++++.+....-+ +...|+.--..+
T Consensus        43 ~~~~e~s~~aL~~t~~~L~~--------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL  113 (306)
T 3dra_A           43 MKAEEYSERALHITELGINE--------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLII  113 (306)
T ss_dssp             HHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHH--------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHH
Confidence            44445556899999998653        333 245776666677777  999999999999875422 334455433333


Q ss_pred             ----HhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChH--HHHHHHHHH
Q 002846          237 ----SSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFD--DLDSTFNEK  310 (874)
Q Consensus       237 ----~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e--~A~~lf~eM  310 (874)
                          ...+       ..++.++++..++       .+.+. .-.|-..|+----.      +.+.|.++  ++++.++.|
T Consensus       114 ~~~~~~l~-------~~~~~~~EL~~~~-------~~l~~-~pkny~aW~~R~~v------l~~l~~~~~~~EL~~~~~~  172 (306)
T 3dra_A          114 GQIMELNN-------NDFDPYREFDILE-------AMLSS-DPKNHHVWSYRKWL------VDTFDLHNDAKELSFVDKV  172 (306)
T ss_dssp             HHHHHHTT-------TCCCTHHHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHHTTCTTCHHHHHHHHHH
T ss_pred             HHHHHhcc-------ccCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHhcccChHHHHHHHHHH
Confidence                3111       2367888988885       44443 33466667666555      66667777  999999999


Q ss_pred             HHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCC------HHHHHHHHHHHHHCCCC
Q 002846          311 ENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYA------FQRGFEIYEKMCLDEVP  384 (874)
Q Consensus       311 ~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~------~~~A~~lf~~M~~~Gv~  384 (874)
                      .+...    .-|                      +.|...     ..++.   +.+.      ++++++.++.+.... +
T Consensus       173 i~~d~----~N~----------------------sAW~~R-----~~ll~---~l~~~~~~~~~~eEl~~~~~aI~~~-p  217 (306)
T 3dra_A          173 IDTDL----KNN----------------------SAWSHR-----FFLLF---SKKHLATDNTIDEELNYVKDKIVKC-P  217 (306)
T ss_dssp             HHHCT----TCH----------------------HHHHHH-----HHHHH---SSGGGCCHHHHHHHHHHHHHHHHHC-S
T ss_pred             HHhCC----CCH----------------------HHHHHH-----HHHHH---hccccchhhhHHHHHHHHHHHHHhC-C
Confidence            87632    111                      112111     12222   2233      788999999888764 4


Q ss_pred             CCHHHHHHHHHHHHhcCChhH-HHHHHHHHHHCC--CCCCcccHHHHHHHHHhCCChhHHHHHHHHHHH
Q 002846          385 MNEASLTAVGRMAMSMGDGDM-AFDMVKRMKSLG--INPRLRSYGPALSVFCNNGDVDKACSVEEHMLE  450 (874)
Q Consensus       385 Pd~~tyn~LI~~~~~~G~~d~-A~~l~~~M~~~G--i~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~  450 (874)
                      -|...|+-+-..+.+.|+... +..+..++...+  -..+...+..+...|++.|+.++|.++++.+.+
T Consensus       218 ~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~  286 (306)
T 3dra_A          218 QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS  286 (306)
T ss_dssp             SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence            588999999888888888554 445555544332  123556677788899999999999999999875

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=93.02  E-value=5.9  Score=43.24  Aligned_cols=223  Identities=10%  Similarity=-0.033  Sum_probs=137.5

Q ss_pred             CCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcccCCCcccCCC-CHHHHHHHHhhcccCchhhhhcCCCCchhhhH
Q 002846          205 GDVMGAIRLYDKAQREGIKLGQ-YHYNVLLYLCSSAAVGVVKPAKSG-SGMRTLDTFEVSTMNSTELGDSRDMDNNGQLD  282 (874)
Q Consensus       205 G~~~~Al~lf~~M~~~Gi~pd~-~tyn~LL~a~~~~~~~~~~~~k~G-~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn  282 (874)
                      +.-++|+++++.+....  |+. ..||.-=..+.          ..| .+++++..++       .+... ...+...|+
T Consensus        68 e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~----------~l~~~l~eEL~~~~-------~~L~~-nPKny~aW~  127 (349)
T 3q7a_A           68 EKSERALELTEIIVRMN--PAHYTVWQYRFSLLT----------SLNKSLEDELRLMN-------EFAVQ-NLKSYQVWH  127 (349)
T ss_dssp             CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH----------HTTCCHHHHHHHHH-------HHHHT-TCCCHHHHH
T ss_pred             CCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHH----------HhhhhHHHHHHHHH-------HHHHh-CCCcHHHHH
Confidence            44468999999998653  443 34555444444          335 5888888885       33332 333555566


Q ss_pred             hhhcCcccChhhhhc-C-ChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHH
Q 002846          283 YGSSPMIDKLESNSS-Y-RFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLS  360 (874)
Q Consensus       283 ~LI~~~~~~~~~~~~-g-~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~  360 (874)
                      .--..      +.+. + ..++++++++.+....                          .-.|+.|...     .-++.
T Consensus       128 hR~wl------L~~l~~~~~~~EL~~~~k~L~~d--------------------------pkNy~AW~~R-----~wvl~  170 (349)
T 3q7a_A          128 HRLLL------LDRISPQDPVSEIEYIHGSLLPD--------------------------PKNYHTWAYL-----HWLYS  170 (349)
T ss_dssp             HHHHH------HHHHCCSCCHHHHHHHHHHTSSC--------------------------TTCHHHHHHH-----HHHHH
T ss_pred             HHHHH------HHHhcCCChHHHHHHHHHHHHhC--------------------------CCCHHHHHHH-----HHHHH
Confidence            65444      4443 4 6677777777776542                          1222223222     33444


Q ss_pred             HHHhcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-------hhHHHHHHHHHHHCCCCCCcccHHHH
Q 002846          361 EDAKKY-----AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD-------GDMAFDMVKRMKSLGINPRLRSYGPA  428 (874)
Q Consensus       361 ~~~k~g-----~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~-------~d~A~~l~~~M~~~Gi~Pd~~tYn~L  428 (874)
                      .+.+..     .+.++++.+++|.+.. .-|...|+-.-..+.+.+.       ++++++.+++..... .-|...|+-+
T Consensus       171 ~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Yl  248 (349)
T 3q7a_A          171 HFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYL  248 (349)
T ss_dssp             HHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             HhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence            444332     1358999999998865 4488889888888888776       688899888877652 2345666655


Q ss_pred             HHHHHhCCCh--------------------hHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 002846          429 LSVFCNNGDV--------------------DKACSVEEHMLEHG-----VYPEEPELEALLRVSVEAGKGDRVYYLLHKL  483 (874)
Q Consensus       429 I~a~~k~G~~--------------------~~A~~l~~eM~~~G-----v~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M  483 (874)
                      -..+.+.|..                    ....++..++...+     -.+....+..|.+.|...|+.++|.++++.+
T Consensus       249 r~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l  328 (349)
T 3q7a_A          249 RGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKL  328 (349)
T ss_dssp             HHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            5555555543                    22333333333221     1467888899999999999999999999999


Q ss_pred             Hhc
Q 002846          484 RTS  486 (874)
Q Consensus       484 ~~~  486 (874)
                      .+.
T Consensus       329 ~~~  331 (349)
T 3q7a_A          329 SSE  331 (349)
T ss_dssp             HHT
T ss_pred             Hhh
Confidence            865

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=92.74  E-value=0.48  Score=44.55  Aligned_cols=90  Identities=11%  Similarity=0.051  Sum_probs=49.4

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHC-------CC----------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc
Q 002846          360 SEDAKKYAFQRGFEIYEKMCLD-------EV----------PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL  422 (874)
Q Consensus       360 ~~~~k~g~~~~A~~lf~~M~~~-------Gv----------~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~  422 (874)
                      ..+.+.|++++|...|.+....       .-          +-+...|..+..+|.+.|++++|...+++..... +.+.
T Consensus        19 ~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~   97 (162)
T 3rkv_A           19 NELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNE   97 (162)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-Ccch
Confidence            5667889999999999876653       00          1122455555555556666666666655554431 1123


Q ss_pred             ccHHHHHHHHHhCCChhHHHHHHHHHHH
Q 002846          423 RSYGPALSVFCNNGDVDKACSVEEHMLE  450 (874)
Q Consensus       423 ~tYn~LI~a~~k~G~~~~A~~l~~eM~~  450 (874)
                      ..|..+-.+|...|++++|...|+....
T Consensus        98 ~a~~~~g~~~~~~g~~~~A~~~~~~al~  125 (162)
T 3rkv_A           98 KALFRRAKARIAAWKLDEAEEDLKLLLR  125 (162)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence            3444444445555555555555554443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=92.74  E-value=0.37  Score=51.24  Aligned_cols=132  Identities=11%  Similarity=-0.042  Sum_probs=89.2

Q ss_pred             hhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHH
Q 002846          294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE  373 (874)
Q Consensus       294 ~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~  373 (874)
                      +...|++++|.++|..+...+  |+-+..                                 -.+-..+.+.+++++|+.
T Consensus       112 L~~~g~y~eA~~~l~~~~~~~--p~~~~~---------------------------------~~~a~l~~~~~r~~dA~~  156 (282)
T 4f3v_A          112 EAAQGNYADAMEALEAAPVAG--SEHLVA---------------------------------WMKAVVYGAAERWTDVID  156 (282)
T ss_dssp             HHHHTCHHHHHHHHTSSCCTT--CHHHHH---------------------------------HHHHHHHHHTTCHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHhcC--CchHHH---------------------------------HHHHHHHHHcCCHHHHHH
Confidence            667788888888887665543  221111                                 233346788999999999


Q ss_pred             HHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcc--cHHHHHHHHHhCCChhHHHHHHHHHH
Q 002846          374 IYEKMCLDEVPMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR--SYGPALSVFCNNGDVDKACSVEEHML  449 (874)
Q Consensus       374 lf~~M~~~Gv~Pd--~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~--tYn~LI~a~~k~G~~~~A~~l~~eM~  449 (874)
                      .|+...... .|.  ...+..|=.++...|++++|+..|++.......|...  .....-.++.+.|+.++|..+|+.+.
T Consensus       157 ~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~  235 (282)
T 4f3v_A          157 QVKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ  235 (282)
T ss_dssp             HHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            998543321 111  2367778888999999999999999987443325532  23334556678899999999999999


Q ss_pred             HcCCCCCHHHHHHH
Q 002846          450 EHGVYPEEPELEAL  463 (874)
Q Consensus       450 ~~Gv~Pd~~ty~~L  463 (874)
                      ...  |+...+.+|
T Consensus       236 a~~--P~~~~~~aL  247 (282)
T 4f3v_A          236 TTH--PEPKVAAAL  247 (282)
T ss_dssp             HHS--CCHHHHHHH
T ss_pred             hcC--CcHHHHHHH
Confidence            854  664444433

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=92.70  E-value=0.63  Score=53.46  Aligned_cols=59  Identities=10%  Similarity=-0.143  Sum_probs=44.4

Q ss_pred             HHhcCChhHHHHHHHHHhhCCCCCCCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002846          160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQ-FQLRVELDMCSKRGDVMGAIRLYDKAQ  218 (874)
Q Consensus       160 ~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~-~tyn~LI~a~~k~G~~~~Al~lf~~M~  218 (874)
                      +...++.++|..++++......+.-....|++ .+++.|-..|...|++++|+.++++..
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL  378 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMV  378 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            44678899999999886553322222235654 578999999999999999999999875

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=92.42  E-value=0.65  Score=52.53  Aligned_cols=127  Identities=9%  Similarity=-0.022  Sum_probs=91.9

Q ss_pred             chHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 002846          356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN--------------EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR  421 (874)
Q Consensus       356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd--------------~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd  421 (874)
                      ..+=..|.+.|++++|...|++.....-.-.              ...|..+-.+|.+.|++++|...+++..+.. .-+
T Consensus       272 ~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~  350 (457)
T 1kt0_A          272 KEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SAN  350 (457)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTC
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-Ccc
Confidence            4444677889999999999998876421111              5788999999999999999999999888753 234


Q ss_pred             cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCchHHH-HHHHHHHh
Q 002846          422 LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVY-YLLHKLRT  485 (874)
Q Consensus       422 ~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~P-d~~ty~~LI~~~~~~G~~d~A~-~ll~~M~~  485 (874)
                      ...|..+-.+|...|++++|...|+...+.  .| +...+..|-..+.+.|+.++|. .++..|..
T Consensus       351 ~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~  414 (457)
T 1kt0_A          351 EKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERDRRIYANMFK  414 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            667777888889999999999999998874  35 3456666767777777776655 34444443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=92.19  E-value=0.48  Score=40.70  Aligned_cols=90  Identities=10%  Similarity=-0.026  Sum_probs=53.5

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-------HH
Q 002846          386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-------EP  458 (874)
Q Consensus       386 d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd-------~~  458 (874)
                      +...|..+-..+...|++++|...|++..+.. +.+...|..+-..|.+.|++++|.+.++...+.  .|+       ..
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~   79 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK   79 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence            34556666777777777777777777766542 123455666666677777777777777777653  244       33


Q ss_pred             HHHHHHHHHHhcCCchHHHH
Q 002846          459 ELEALLRVSVEAGKGDRVYY  478 (874)
Q Consensus       459 ty~~LI~~~~~~G~~d~A~~  478 (874)
                      .+..+-.++...|+.+.|..
T Consensus        80 ~~~~~~~~~~~~~~~~~a~~   99 (111)
T 2l6j_A           80 LQYRLELAQGAVGSVQIPVV   99 (111)
T ss_dssp             HHHHHHHHHHHHHCCCCCSS
T ss_pred             HHHHHHHHHHHHHhHhhhHh
Confidence            33444444444444444433

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=91.91  E-value=0.81  Score=47.90  Aligned_cols=98  Identities=14%  Similarity=-0.003  Sum_probs=82.7

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 002846          386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL  464 (874)
Q Consensus       386 d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~P-d~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI  464 (874)
                      +...+..+-..+...|++++|...|++....  .| +...|..+-..|.+.|++++|...++...+.. .-+...|..+-
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg   79 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG   79 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence            4567888889999999999999999998875  35 56777778888999999999999999988743 23567888888


Q ss_pred             HHHHhcCCchHHHHHHHHHHhc
Q 002846          465 RVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       465 ~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      .+|...|++++|...|.+....
T Consensus        80 ~~~~~~g~~~~A~~~~~~al~l  101 (281)
T 2c2l_A           80 QCQLEMESYDEAIANLQRAYSL  101 (281)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHh
Confidence            8999999999999999987764

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=91.84  E-value=0.48  Score=41.68  Aligned_cols=77  Identities=16%  Similarity=-0.005  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHH
Q 002846          371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHML  449 (874)
Q Consensus       371 A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~  449 (874)
                      |.+.|++..... +-+...+..+-..|...|++++|...|++..... ..+...|..+-..|...|+.++|...|+...
T Consensus         4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A            4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            455555555432 2345566666666666777777776666665442 1123344445555555566666655555544

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=91.65  E-value=0.67  Score=51.01  Aligned_cols=117  Identities=15%  Similarity=0.138  Sum_probs=75.0

Q ss_pred             chHHHHHHhcCCHHHHHHHHHHHHHC--------------CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 002846          356 EIRLSEDAKKYAFQRGFEIYEKMCLD--------------EV-PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP  420 (874)
Q Consensus       356 n~lI~~~~k~g~~~~A~~lf~~M~~~--------------Gv-~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~P  420 (874)
                      ..+-..+.+.|++++|.+.|++....              .. .-+..+|..+..+|.+.|++++|...+++..+.  .|
T Consensus       227 ~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p  304 (370)
T 1ihg_A          227 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--DP  304 (370)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CT
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--Cc
Confidence            34446677899999999999887651              01 123466777777777888888888888777654  33


Q ss_pred             -CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCchHH
Q 002846          421 -RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRV  476 (874)
Q Consensus       421 -d~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~P-d~~ty~~LI~~~~~~G~~d~A  476 (874)
                       +...|..+-.+|...|+.++|.+.|+...+..  | +...+..|-..+...++.+++
T Consensus       305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--P~~~~~~~~l~~~~~~~~~~~~a  360 (370)
T 1ihg_A          305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQAELLKVKQKIKAQKDK  360 (370)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence             34556666667777777777777777766542  4 344444444444444444433

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=90.93  E-value=1.8  Score=40.10  Aligned_cols=111  Identities=13%  Similarity=0.062  Sum_probs=87.3

Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHh----CCChhH
Q 002846          365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN----NGDVDK  440 (874)
Q Consensus       365 ~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k----~G~~~~  440 (874)
                      .++.++|++.|++-.+.| .|+..    |-..|...+.+++|++.|++-.+.|   +...+..|=..|..    .++.++
T Consensus         8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~   79 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK   79 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred             ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence            457889999999999988 33333    6666777788999999999988875   34555556566666    789999


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCchHHHHHHHHHHhc
Q 002846          441 ACSVEEHMLEHGVYPEEPELEALLRVSVE----AGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       441 A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~----~G~~d~A~~ll~~M~~~  486 (874)
                      |.+.|+...+.|   +...+..|=..|..    .++.++|..+|.+-.+.
T Consensus        80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            999999998876   56677777777777    78899999999988876

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=90.90  E-value=1.8  Score=40.48  Aligned_cols=98  Identities=18%  Similarity=0.139  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHC-------CC---------CC-CcccHHHHHHHHHhCCChhHHHHHHHHHHH
Q 002846          388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSL-------GI---------NP-RLRSYGPALSVFCNNGDVDKACSVEEHMLE  450 (874)
Q Consensus       388 ~tyn~LI~~~~~~G~~d~A~~l~~~M~~~-------Gi---------~P-d~~tYn~LI~a~~k~G~~~~A~~l~~eM~~  450 (874)
                      ..+...-..+.+.|++++|...|.+....       .-         .| +...|..+-.+|.+.|++++|...++...+
T Consensus        12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~   91 (162)
T 3rkv_A           12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK   91 (162)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence            45566677888999999999999887654       00         11 235677788889999999999999999887


Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          451 HGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       451 ~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      .. .-+...|..+-.+|...|++++|...|.+....
T Consensus        92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            54 235778888999999999999999999998876

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=89.79  E-value=1.5  Score=52.32  Aligned_cols=104  Identities=11%  Similarity=0.058  Sum_probs=71.6

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChh
Q 002846          360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD  439 (874)
Q Consensus       360 ~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~  439 (874)
                      ......|++++|+++.+.+      .+...|..|.+.+.+.|+++.|.++|..+..         |..+..-|...|+.+
T Consensus       660 ~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~  724 (814)
T 3mkq_A          660 ELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKE  724 (814)
T ss_dssp             HHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHH
T ss_pred             ehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHH
Confidence            3445678888888886543      3678899999999999999999999987643         455666666677777


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 002846          440 KACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR  484 (874)
Q Consensus       440 ~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~  484 (874)
                      ...++-+.....|-      ++.-..+|.+.|++++|.+++.++.
T Consensus       725 ~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~~~  763 (814)
T 3mkq_A          725 GLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIKSQ  763 (814)
T ss_dssp             HHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence            66666555555441      2334444556677777777766554

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=89.64  E-value=2.3  Score=34.77  Aligned_cols=64  Identities=19%  Similarity=0.231  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 002846          387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH  451 (874)
Q Consensus       387 ~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~  451 (874)
                      ...+..+-..+...|++++|...|++..... ..+...+..+-..|.+.|+.++|...|+...+.
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~   72 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL   72 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            3455666666777777777777777665542 123444555556666667777776666666553

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=89.63  E-value=0.39  Score=52.02  Aligned_cols=124  Identities=9%  Similarity=-0.016  Sum_probs=65.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH------------------HHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 002846          358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEA------------------SLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN  419 (874)
Q Consensus       358 lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~------------------tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~  419 (874)
                      +-..+.+.|++++|...|++....  .|+..                  .|..+-.+|.+.|++++|...+++..+.. .
T Consensus       185 ~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p  261 (338)
T 2if4_A          185 DGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE-E  261 (338)
T ss_dssp             HHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC-T
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence            334556788999999999987653  34433                  67778888888888888888888776642 1


Q ss_pred             CCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHH-HHhcCCchHHHHHHHHHHhc
Q 002846          420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP-ELEALLRV-SVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       420 Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~-ty~~LI~~-~~~~G~~d~A~~ll~~M~~~  486 (874)
                      -+...|..+-.+|...|++++|...|+...+.  .|+.. .+..|-.. ....+..+++..+|..|...
T Consensus       262 ~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~  328 (338)
T 2if4_A          262 KNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG  328 (338)
T ss_dssp             TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            24566777777888888888888888876543  34332 23333222 12345556667777766554

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=88.41  E-value=4  Score=45.93  Aligned_cols=97  Identities=12%  Similarity=-0.011  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----------------cccHHHHHHHHHhCCChhHHHHHHHHHHH
Q 002846          387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----------------LRSYGPALSVFCNNGDVDKACSVEEHMLE  450 (874)
Q Consensus       387 ~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd----------------~~tYn~LI~a~~k~G~~~~A~~l~~eM~~  450 (874)
                      ...|..+-..|.+.|++++|...|++..+.  .|+                ...|..+-.+|.+.|++++|...++...+
T Consensus       268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  345 (457)
T 1kt0_A          268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG  345 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            346777888899999999999999988764  244                36788888899999999999999999887


Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          451 HGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       451 ~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      .. .-+...|..+-.+|...|++++|...|++..+.
T Consensus       346 ~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l  380 (457)
T 1kt0_A          346 LD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV  380 (457)
T ss_dssp             HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             cC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            54 236778888889999999999999999998875

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=88.29  E-value=1.8  Score=37.83  Aligned_cols=80  Identities=9%  Similarity=-0.035  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 002846          405 MAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR  484 (874)
Q Consensus       405 ~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~  484 (874)
                      .|...|++..+.. .-+...|..+-..|...|++++|...|+...... ..+...|..|-..|...|+.++|...|.+..
T Consensus         3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A            3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            5677777776542 2345677778888999999999999999988754 2356788888889999999999999999887


Q ss_pred             hc
Q 002846          485 TS  486 (874)
Q Consensus       485 ~~  486 (874)
                      ..
T Consensus        81 ~~   82 (115)
T 2kat_A           81 AA   82 (115)
T ss_dssp             HH
T ss_pred             Hh
Confidence            64

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=87.87  E-value=1.8  Score=37.35  Aligned_cols=64  Identities=9%  Similarity=0.085  Sum_probs=46.3

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHH
Q 002846          386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE  450 (874)
Q Consensus       386 d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~  450 (874)
                      +...+..+-..|...|++++|...|++..+..- -+...|..+-.+|...|+.++|.+.|+...+
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            556777778888888888888888887776531 2345666677777788888888888776554

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=87.54  E-value=3.4  Score=45.21  Aligned_cols=97  Identities=14%  Similarity=0.031  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHC--------------CCCC-CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 002846          389 SLTAVGRMAMSMGDGDMAFDMVKRMKSL--------------GINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGV  453 (874)
Q Consensus       389 tyn~LI~~~~~~G~~d~A~~l~~~M~~~--------------Gi~P-d~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv  453 (874)
                      .|..+-..+.+.|++++|...|++..+.              ...| +...|..+-.+|.+.|++++|.+.++...+.. 
T Consensus       225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-  303 (370)
T 1ihg_A          225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-  303 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence            4667788899999999999999987751              0122 34677778888899999999999999998753 


Q ss_pred             CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          454 YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       454 ~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      .-+...|..+-.+|...|++++|...|++..+.
T Consensus       304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l  336 (370)
T 1ihg_A          304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI  336 (370)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            225678888888999999999999999998876

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=87.45  E-value=13  Score=40.46  Aligned_cols=227  Identities=11%  Similarity=-0.005  Sum_probs=135.3

Q ss_pred             HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 002846          159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRG-DVMGAIRLYDKAQREGIKLGQYHYNVLLYLCS  237 (874)
Q Consensus       159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G-~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~  237 (874)
                      .+.+.....+|+++++.+....  |+     +..+|+.-=..+...| ++++++.+++.+....- -+...|+.--.++.
T Consensus        63 ~~~~~e~se~AL~lt~~~L~~n--P~-----~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~  134 (349)
T 3q7a_A           63 IAAKEEKSERALELTEIIVRMN--PA-----HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLD  134 (349)
T ss_dssp             HHHTTCCSHHHHHHHHHHHHHC--TT-----CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHhC--ch-----hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHH
Confidence            3445556678999999986532  11     2245666656666677 59999999999997542 35566776555555


Q ss_pred             hcccCCCcccCCC-CHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChH--------HHHHHHH
Q 002846          238 SAAVGVVKPAKSG-SGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFD--------DLDSTFN  308 (874)
Q Consensus       238 ~~~~~~~~~~k~G-~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e--------~A~~lf~  308 (874)
                      ..         .+ ..++++..++       .+.+. ...|...|+--.-.      +.+.+.++        ++++.++
T Consensus       135 ~l---------~~~~~~~EL~~~~-------k~L~~-dpkNy~AW~~R~wv------l~~l~~~~~~~~~~~~eELe~~~  191 (349)
T 3q7a_A          135 RI---------SPQDPVSEIEYIH-------GSLLP-DPKNYHTWAYLHWL------YSHFSTLGRISEAQWGSELDWCN  191 (349)
T ss_dssp             HH---------CCSCCHHHHHHHH-------HHTSS-CTTCHHHHHHHHHH------HHHHHHTTCCCHHHHHHHHHHHH
T ss_pred             Hh---------cCCChHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHhccccccchhhHHHHHHHHH
Confidence            21         13 5678888874       44433 33355666654444      33444444        7788888


Q ss_pred             HHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCC-------HHHHHHHHHHHHHC
Q 002846          309 EKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYA-------FQRGFEIYEKMCLD  381 (874)
Q Consensus       309 eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~-------~~~A~~lf~~M~~~  381 (874)
                      +|.+.... |...                      |           +-.-..+.+.+.       ++++++.++++...
T Consensus       192 k~I~~dp~-N~SA----------------------W-----------~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~  237 (349)
T 3q7a_A          192 EMLRVDGR-NNSA----------------------W-----------GWRWYLRVSRPGAETSSRSLQDELIYILKSIHL  237 (349)
T ss_dssp             HHHHHCTT-CHHH----------------------H-----------HHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCC-CHHH----------------------H-----------HHHHHHHHhccccccchHHHHHHHHHHHHHHHh
Confidence            77775311 1111                      1           111111122222       68899999888875


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCh--------------------hHHHHHHHHHHHCC-----CCCCcccHHHHHHHHHhCC
Q 002846          382 EVPMNEASLTAVGRMAMSMGDG--------------------DMAFDMVKRMKSLG-----INPRLRSYGPALSVFCNNG  436 (874)
Q Consensus       382 Gv~Pd~~tyn~LI~~~~~~G~~--------------------d~A~~l~~~M~~~G-----i~Pd~~tYn~LI~a~~k~G  436 (874)
                      . +-|...|+-+-..+.+.|+.                    ....+...++...+     -.+......-|...|+..|
T Consensus       238 ~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~  316 (349)
T 3q7a_A          238 I-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQN  316 (349)
T ss_dssp             C-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTT
T ss_pred             C-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcC
Confidence            3 44888898877777777664                    12222222222111     0234455566888999999


Q ss_pred             ChhHHHHHHHHHHHc
Q 002846          437 DVDKACSVEEHMLEH  451 (874)
Q Consensus       437 ~~~~A~~l~~eM~~~  451 (874)
                      +.++|.++++.+.+.
T Consensus       317 ~~~~a~~~~~~l~~~  331 (349)
T 3q7a_A          317 RVDDAAKVFEKLSSE  331 (349)
T ss_dssp             CHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHhh
Confidence            999999999998643

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=86.98  E-value=7  Score=37.68  Aligned_cols=103  Identities=8%  Similarity=0.024  Sum_probs=67.8

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCC-C-----CH-----HHHHHHHHHHHhcCChhHHHHHHHHHHHC-----CCCCCc-
Q 002846          360 SEDAKKYAFQRGFEIYEKMCLDEVP-M-----NE-----ASLTAVGRMAMSMGDGDMAFDMVKRMKSL-----GINPRL-  422 (874)
Q Consensus       360 ~~~~k~g~~~~A~~lf~~M~~~Gv~-P-----d~-----~tyn~LI~~~~~~G~~d~A~~l~~~M~~~-----Gi~Pd~-  422 (874)
                      ..+.+.|++++|.+.|++-.+-.-. |     +.     ..|+.+-.++.+.|++++|+..+++..+.     -+.|+. 
T Consensus        19 ~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~   98 (159)
T 2hr2_A           19 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG   98 (159)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchH
Confidence            4566789999999999987764211 1     22     38888888888999999998888877653     124542 


Q ss_pred             ccH----HHHHHHHHhCCChhHHHHHHHHHHH-----cCCCCCHHHHHH
Q 002846          423 RSY----GPALSVFCNNGDVDKACSVEEHMLE-----HGVYPEEPELEA  462 (874)
Q Consensus       423 ~tY----n~LI~a~~k~G~~~~A~~l~~eM~~-----~Gv~Pd~~ty~~  462 (874)
                      ..|    ...=.++...|+.++|...|+...+     .|+.+.......
T Consensus        99 ~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~  147 (159)
T 2hr2_A           99 KLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMME  147 (159)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHH
T ss_pred             HHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence            344    4455566677777777777776643     244444444333

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=86.93  E-value=0.98  Score=38.69  Aligned_cols=64  Identities=11%  Similarity=0.171  Sum_probs=52.8

Q ss_pred             chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc
Q 002846          356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL  422 (874)
Q Consensus       356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~  422 (874)
                      ..+-..+.+.|++++|.+.|++..... +.+...|..+-.++...|++++|...+++..+.  .|+.
T Consensus         8 ~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~   71 (111)
T 2l6j_A            8 KEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTA   71 (111)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSST
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCc
Confidence            445567778999999999999988753 346788999999999999999999999998765  4654

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=86.57  E-value=7.5  Score=35.68  Aligned_cols=83  Identities=13%  Similarity=-0.012  Sum_probs=67.9

Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHh----C
Q 002846          364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN----N  435 (874)
Q Consensus       364 k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~----~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k----~  435 (874)
                      ..+.+++|++.|++-.+.|   +...+..|-..|..    .++.++|+..|++-.+.|.   ...+..|=..|..    .
T Consensus        37 ~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~a~~~Lg~~y~~G~g~~  110 (138)
T 1klx_A           37 SQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLND---QDGCLILGYKQYAGKGVV  110 (138)
T ss_dssp             TTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSC
T ss_pred             cCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCCC---HHHHHHHHHHHHCCCCCC
Confidence            3456788999999998887   67888888888888    8999999999999988764   4455556666777    7


Q ss_pred             CChhHHHHHHHHHHHcC
Q 002846          436 GDVDKACSVEEHMLEHG  452 (874)
Q Consensus       436 G~~~~A~~l~~eM~~~G  452 (874)
                      ++.++|.+.|+.-.+.|
T Consensus       111 ~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A          111 KNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             CCHHHHHHHHHHHHHTT
T ss_pred             cCHHHHHHHHHHHHHCC
Confidence            89999999999888776

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=85.06  E-value=3.2  Score=46.64  Aligned_cols=85  Identities=13%  Similarity=0.069  Sum_probs=45.1

Q ss_pred             hcCChhHHHHHHHHHHHC--C-CCCC----cccHHHHHHHHHhCCChhHHHHHHHHHHHc-----C-CCCC-HHHHHHHH
Q 002846          399 SMGDGDMAFDMVKRMKSL--G-INPR----LRSYGPALSVFCNNGDVDKACSVEEHMLEH-----G-VYPE-EPELEALL  464 (874)
Q Consensus       399 ~~G~~d~A~~l~~~M~~~--G-i~Pd----~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~-----G-v~Pd-~~ty~~LI  464 (874)
                      +.|++++|..++++..+.  . +-|+    ..+++.|...|...|++++|..++++..+-     | -.|+ ..+|+.|-
T Consensus       299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa  378 (429)
T 3qwp_A          299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG  378 (429)
T ss_dssp             HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence            345566666666555432  1 1122    345555666666666666666666554321     1 1122 24456666


Q ss_pred             HHHHhcCCchHHHHHHHHH
Q 002846          465 RVSVEAGKGDRVYYLLHKL  483 (874)
Q Consensus       465 ~~~~~~G~~d~A~~ll~~M  483 (874)
                      ..|...|++++|..++.+.
T Consensus       379 ~~~~~~g~~~eA~~~~~~A  397 (429)
T 3qwp_A          379 KLQLHQGMFPQAMKNLRLA  397 (429)
T ss_dssp             HHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHH
Confidence            6666677777776666653

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=84.21  E-value=3.1  Score=46.82  Aligned_cols=83  Identities=11%  Similarity=-0.013  Sum_probs=42.5

Q ss_pred             CChhHHHHHHHHHHHC---CCCCC----cccHHHHHHHHHhCCChhHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHH
Q 002846          401 GDGDMAFDMVKRMKSL---GINPR----LRSYGPALSVFCNNGDVDKACSVEEHMLEH-----G-VYPE-EPELEALLRV  466 (874)
Q Consensus       401 G~~d~A~~l~~~M~~~---Gi~Pd----~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~-----G-v~Pd-~~ty~~LI~~  466 (874)
                      |++++|..++++..+.   -+-|+    ..+|+.|-..|...|++++|..+++...+-     | -.|+ ..+|+.|-..
T Consensus       312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~  391 (433)
T 3qww_A          312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL  391 (433)
T ss_dssp             SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence            4555555555544321   11122    345555666666666666666665554321     2 1122 2345666666


Q ss_pred             HHhcCCchHHHHHHHHH
Q 002846          467 SVEAGKGDRVYYLLHKL  483 (874)
Q Consensus       467 ~~~~G~~d~A~~ll~~M  483 (874)
                      |...|++++|..++.+.
T Consensus       392 ~~~qg~~~eA~~~~~~A  408 (433)
T 3qww_A          392 YMGLENKAAGEKALKKA  408 (433)
T ss_dssp             HHHTTCHHHHHHHHHHH
T ss_pred             HHhccCHHHHHHHHHHH
Confidence            66666666666666553

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=84.18  E-value=14  Score=42.05  Aligned_cols=118  Identities=9%  Similarity=0.053  Sum_probs=80.5

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCChhHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHhC
Q 002846          359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLT--AVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNN  435 (874)
Q Consensus       359 I~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn--~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~-~tYn~LI~a~~k~  435 (874)
                      +..+-+.+.++.|..+|+.....+  .+...|.  +.+...+ .++++.|..+|+...+.-  |+. ..+...+....+.
T Consensus       293 ~~~~~r~~~~~~AR~i~~~A~~~~--~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~  367 (493)
T 2uy1_A          293 LNYVLKKRGLELFRKLFIELGNEG--VGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRI  367 (493)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHTTSC--CCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHhhCCC--CChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHc
Confidence            344445667888888888872222  2333443  3333322 236899999998877642  332 2345566667778


Q ss_pred             CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       436 G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      |+.+.|..+|+...     .....|...++.=...|+.+.+..+++++...
T Consensus       368 ~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~  413 (493)
T 2uy1_A          368 GDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMDA  413 (493)
T ss_dssp             TCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            99999999999872     35778888888878889999999999888764

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=83.98  E-value=5.5  Score=32.35  Aligned_cols=60  Identities=20%  Similarity=0.190  Sum_probs=50.2

Q ss_pred             chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 002846          356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL  416 (874)
Q Consensus       356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~  416 (874)
                      ..+-..+.+.|++++|...|++..... +.+..++..+...+...|++++|...|++..+.
T Consensus        13 ~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~   72 (91)
T 1na3_A           13 YNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL   72 (91)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            344466778999999999999988753 336778999999999999999999999998765

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=83.92  E-value=3  Score=44.90  Aligned_cols=96  Identities=10%  Similarity=-0.077  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcc------------------cHHHHHHHHHhCCChhHHHHHHHHHH
Q 002846          388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR------------------SYGPALSVFCNNGDVDKACSVEEHML  449 (874)
Q Consensus       388 ~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~------------------tYn~LI~a~~k~G~~~~A~~l~~eM~  449 (874)
                      ..+..+-..+.+.|++++|...|++....  .|+..                  .|..+-.+|.+.|++++|...++...
T Consensus       180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al  257 (338)
T 2if4_A          180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL  257 (338)
T ss_dssp             HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34556677788899999999999987654  34433                  67778888899999999999999988


Q ss_pred             HcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          450 EHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       450 ~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      +.. .-+...|..+-.+|...|++++|...|++....
T Consensus       258 ~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l  293 (338)
T 2if4_A          258 TEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY  293 (338)
T ss_dssp             HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred             HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            753 236778888999999999999999999987754

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=83.87  E-value=14  Score=40.48  Aligned_cols=140  Identities=9%  Similarity=-0.024  Sum_probs=92.0

Q ss_pred             chHHHHHHh--c---CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH----hcC-ChhHHHH---HHHHHHHC-CCCC
Q 002846          356 EIRLSEDAK--K---YAFQRGFEIYEKMCLDEVPMN-EASLTAVGRMAM----SMG-DGDMAFD---MVKRMKSL-GINP  420 (874)
Q Consensus       356 n~lI~~~~k--~---g~~~~A~~lf~~M~~~Gv~Pd-~~tyn~LI~~~~----~~G-~~d~A~~---l~~~M~~~-Gi~P  420 (874)
                      ...+.+...  .   ..+.+|.++|++..+.  .|+ ...|..+.-+|.    ..+ .......   .++..... .-..
T Consensus       198 dl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~  275 (372)
T 3ly7_A          198 TNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNN  275 (372)
T ss_dssp             HHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCc
Confidence            566654432  2   3468999999998875  354 344443333332    111 1111111   12211111 2245


Q ss_pred             CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCChhHHHHHHH
Q 002846          421 RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAK  500 (874)
Q Consensus       421 d~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~T~~~I~~  500 (874)
                      +..+|..+-..+...|++++|...++.....+  |+...|..+=..+.-.|+.++|.+.+.+-...  .|++.||..+..
T Consensus       276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~~~~~  351 (372)
T 3ly7_A          276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLYWIEN  351 (372)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHHHHhC
Confidence            66777777666667799999999999999976  88888877777788999999999999988887  788878766554


Q ss_pred             H
Q 002846          501 W  501 (874)
Q Consensus       501 ~  501 (874)
                      .
T Consensus       352 l  352 (372)
T 3ly7_A          352 G  352 (372)
T ss_dssp             S
T ss_pred             c
Confidence            4

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=82.94  E-value=10  Score=36.53  Aligned_cols=96  Identities=11%  Similarity=0.044  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--------cc-----cHHHHHHHHHhCCChhHHHHHHHHHHHc----
Q 002846          389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR--------LR-----SYGPALSVFCNNGDVDKACSVEEHMLEH----  451 (874)
Q Consensus       389 tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd--------~~-----tYn~LI~a~~k~G~~~~A~~l~~eM~~~----  451 (874)
                      .+..+-..+.+.|++++|...|++..+.  .|+        ..     .|+.+=.++.+.|++++|...++...+.    
T Consensus        13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           13 LALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            3445556678899999999999987764  344        22     7888888899999999999999998874    


Q ss_pred             -CCCCCH-HHH----HHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          452 -GVYPEE-PEL----EALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       452 -Gv~Pd~-~ty----~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                       .+.|+. ..|    ..+=.++...|++++|+..|++..+.
T Consensus        91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel  131 (159)
T 2hr2_A           91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM  131 (159)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence             125754 455    66677888999999999999987653

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=82.44  E-value=4.2  Score=45.63  Aligned_cols=93  Identities=11%  Similarity=0.053  Sum_probs=70.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHC--C-CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC-----C-CCCC-cc
Q 002846          358 RLSEDAKKYAFQRGFEIYEKMCLD--E-VPMN----EASLTAVGRMAMSMGDGDMAFDMVKRMKSL-----G-INPR-LR  423 (874)
Q Consensus       358 lI~~~~k~g~~~~A~~lf~~M~~~--G-v~Pd----~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~-----G-i~Pd-~~  423 (874)
                      .|..+.+.|++++|.+++++..+.  . +.|+    ..+++.|...|...|++++|..++++....     | -.|+ ..
T Consensus       293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~  372 (429)
T 3qwp_A          293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV  372 (429)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence            356677889999999999888753  1 2232    457899999999999999999999977543     2 2233 46


Q ss_pred             cHHHHHHHHHhCCChhHHHHHHHHHHH
Q 002846          424 SYGPALSVFCNNGDVDKACSVEEHMLE  450 (874)
Q Consensus       424 tYn~LI~a~~k~G~~~~A~~l~~eM~~  450 (874)
                      +|+.|=..|...|++++|..++++..+
T Consensus       373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          373 QVMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            778888889999999999998887654

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=81.18  E-value=3.6  Score=35.30  Aligned_cols=59  Identities=15%  Similarity=0.187  Sum_probs=49.5

Q ss_pred             chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 002846          356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKS  415 (874)
Q Consensus       356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~  415 (874)
                      ..+-..|.+.|++++|.+.|++..+.. +-+...|..+-.+|...|++++|.+.|++..+
T Consensus        11 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A           11 YALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            455567788999999999999988764 23567899999999999999999999987654

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=80.47  E-value=8.4  Score=43.92  Aligned_cols=90  Identities=8%  Similarity=0.051  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHH-----HHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHH
Q 002846          387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP-----ALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPEL  460 (874)
Q Consensus       387 ~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~-----LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd-~~ty  460 (874)
                      ...|-..++..-+.+.++.|..+|+.. ..   |. .++..     .+...+ .++.+.|..+|+...+.-  |+ ...|
T Consensus       286 ~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~---~~-~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~--~~~~~~~  357 (493)
T 2uy1_A          286 DLLRINHLNYVLKKRGLELFRKLFIEL-GN---EG-VGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH--PDSTLLK  357 (493)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHH-TT---SC-CCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC--TTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHh-hC---CC-CChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC--CCCHHHH
Confidence            356777788877888999999999988 22   33 23332     333222 347999999999988753  43 4456


Q ss_pred             HHHHHHHHhcCCchHHHHHHHHHH
Q 002846          461 EALLRVSVEAGKGDRVYYLLHKLR  484 (874)
Q Consensus       461 ~~LI~~~~~~G~~d~A~~ll~~M~  484 (874)
                      ...++...+.|+.+.|..+|++..
T Consensus       358 ~~yid~e~~~~~~~~aR~l~er~~  381 (493)
T 2uy1_A          358 EEFFLFLLRIGDEENARALFKRLE  381 (493)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHSC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH
Confidence            667888888999999999999973

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=80.39  E-value=4.8  Score=45.31  Aligned_cols=86  Identities=7%  Similarity=-0.079  Sum_probs=65.1

Q ss_pred             cCCHHHHHHHHHHHHH---CCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC-----C-CCCC-cccHHHHHH
Q 002846          365 KYAFQRGFEIYEKMCL---DEVPMN----EASLTAVGRMAMSMGDGDMAFDMVKRMKSL-----G-INPR-LRSYGPALS  430 (874)
Q Consensus       365 ~g~~~~A~~lf~~M~~---~Gv~Pd----~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~-----G-i~Pd-~~tYn~LI~  430 (874)
                      .|++++|..++++...   .-+.|+    ..+++.|..+|...|++++|..++++....     | -.|+ ..+|+.|=.
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            5688999999987654   222232    467899999999999999999999877543     2 2233 467888888


Q ss_pred             HHHhCCChhHHHHHHHHHHH
Q 002846          431 VFCNNGDVDKACSVEEHMLE  450 (874)
Q Consensus       431 a~~k~G~~~~A~~l~~eM~~  450 (874)
                      .|...|+.++|..++++..+
T Consensus       391 ~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          391 LYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhccCHHHHHHHHHHHHH
Confidence            89999999999999887654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=80.06  E-value=13  Score=44.19  Aligned_cols=77  Identities=13%  Similarity=0.207  Sum_probs=59.2

Q ss_pred             chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhC
Q 002846          356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN  435 (874)
Q Consensus       356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~  435 (874)
                      ..+-..+.+.++++.|.+.|..+..         |..|...|...|+.+...++-+.....|.      |+....+|.+.
T Consensus       685 ~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~  749 (814)
T 3mkq_A          685 RALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIA  749 (814)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHc
Confidence            7788889999999999999998764         56677778888888887777666666553      56666677777


Q ss_pred             CChhHHHHHHHH
Q 002846          436 GDVDKACSVEEH  447 (874)
Q Consensus       436 G~~~~A~~l~~e  447 (874)
                      |++++|.+++.+
T Consensus       750 g~~~~a~~~~~~  761 (814)
T 3mkq_A          750 GDIQGAKDLLIK  761 (814)
T ss_dssp             TCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH
Confidence            888777766544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	874
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.95
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.75
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.49
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.33
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.77
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.53
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	97.47
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	97.1
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	96.64
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	96.43
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	96.08
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	95.95
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	95.78
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	95.57
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	95.41
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	95.31
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	95.29
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	95.24
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	95.23
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	94.99
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	94.99
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	94.78
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	94.53
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	94.26
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	94.09
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	93.82
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	93.61
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	93.32
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	93.12
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	92.89
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	92.76
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	92.75
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	92.03
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	91.86
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	91.17
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	90.43
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	90.09
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	88.81
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	87.72
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	87.65
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	87.62
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	83.54
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	81.74

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1.9e-07  Score=98.16  Aligned_cols=278  Identities=12%  Similarity=0.029  Sum_probs=190.7

Q ss_pred             HHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 002846          160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA  239 (874)
Q Consensus       160 ~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~  239 (874)
                      .-+.|+.++|.+.|+++....  |     -+...+..+-..|.+.|++++|+.+|++..+.. +-+..+|..+-.++.  
T Consensus         9 ~~~~G~~~~A~~~~~~~l~~~--p-----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~--   78 (388)
T d1w3ba_           9 EYQAGDFEAAERHCMQLWRQE--P-----DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYK--   78 (388)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHC--T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH--
T ss_pred             HHHcCCHHHHHHHHHHHHHhC--C-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhh--
Confidence            346789999999999986532  1     135678888889999999999999999998653 234567888878887  


Q ss_pred             ccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchh----------------------------------hhHhhh
Q 002846          240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNG----------------------------------QLDYGS  285 (874)
Q Consensus       240 ~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~v----------------------------------tyn~LI  285 (874)
                              +.|++++|...+.       ..... ...+..                                  .+....
T Consensus        79 --------~~g~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (388)
T d1w3ba_          79 --------ERGQLQEAIEHYR-------HALRL-KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLG  142 (388)
T ss_dssp             --------HHTCHHHHHHHHH-------HHHHH-CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred             --------hhccccccccccc-------ccccc-cccccccccccccccccccccccccccccccccccccccccccccc
Confidence                    7799999999885       22221 111000                                  011111


Q ss_pred             cCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeec---------cccHHHHHHhhhcC---CCCc-ccccccccccC
Q 002846          286 SPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL---------NSQLLDGRSNLERG---PDDQ-SRKKDWSIDNQ  352 (874)
Q Consensus       286 ~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~---------~g~~~eA~~l~~~m---~pd~-~ty~~w~i~~~  352 (874)
                      ..      ....+....+...+......  .|+.....         .+...+|...+.+.   .|+. ..|        
T Consensus       143 ~~------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--------  206 (388)
T d1w3ba_         143 NL------LKALGRLEEAKACYLKAIET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAY--------  206 (388)
T ss_dssp             HH------HHTTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHH--------
T ss_pred             cc------ccccchhhhhHHHHHHhhcc--CcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHH--------
Confidence            11      22333444444444444333  23221111         66777777777665   4443 344        


Q ss_pred             CccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-cccHHHHHHH
Q 002846          353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSV  431 (874)
Q Consensus       353 ~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd-~~tYn~LI~a  431 (874)
                         ..+-..+...|++++|...|+.....+ ..+...+..+...+.+.|++++|...|++..+.  .|+ ..+|..+-..
T Consensus       207 ---~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~  280 (388)
T d1w3ba_         207 ---INLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANA  280 (388)
T ss_dssp             ---HHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHH
T ss_pred             ---HHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence               556677788888999999888877754 345677778888888899999999999887765  344 4567777888


Q ss_pred             HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          432 FCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       432 ~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      |...|+.++|.+.++...... ..+...+..+...+...|++++|...|++..+.
T Consensus       281 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  334 (388)
T d1w3ba_         281 LKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV  334 (388)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred             HHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            888899999999888776543 456677888888888889999999999887764

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=4.5e-06  Score=87.31  Aligned_cols=290  Identities=11%  Similarity=-0.005  Sum_probs=200.9

Q ss_pred             HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 002846          159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS  238 (874)
Q Consensus       159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~  238 (874)
                      ...+.++.++|...|+...+..  |     -+..+|..+...|.+.|++++|+..+..+...........+.........
T Consensus        42 ~~~~~~~~~~A~~~~~~al~~~--p-----~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (388)
T d1w3ba_          42 IHFQCRRLDRSAHFSTLAIKQN--P-----LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAA  114 (388)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC--T-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC--C-----CCHHHHHHHHHHhhhhcccccccccccccccccccccccccccccccccc
Confidence            4457789999999999986532  1     13468899999999999999999999999875433222222111111110


Q ss_pred             cccCC-----------------------CcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhh
Q 002846          239 AAVGV-----------------------VKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESN  295 (874)
Q Consensus       239 ~~~~~-----------------------~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~  295 (874)
                      .....                       ......+....+...+.       ..... ...+...+..+-..      +.
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~~~~l~~~------~~  180 (388)
T d1w3ba_         115 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL-------KAIET-QPNFAVAWSNLGCV------FN  180 (388)
T ss_dssp             SCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HH
T ss_pred             ccccccccccccccccccccccccccccccccccchhhhhHHHHH-------Hhhcc-CcchhHHHHhhccc------cc
Confidence            00000                       00113334444444442       12111 11133445555555      77


Q ss_pred             hcCChHHHHHHHHHHHHcCCCCCee-eec--------cccHHHHHHhhhcC---C-CCcccccccccccCCccchHHHHH
Q 002846          296 SSYRFDDLDSTFNEKENLGQFSNGH-MKL--------NSQLLDGRSNLERG---P-DDQSRKKDWSIDNQDADEIRLSED  362 (874)
Q Consensus       296 ~~g~~e~A~~lf~eM~~~Gi~Pd~~-ty~--------~g~~~eA~~l~~~m---~-pd~~ty~~w~i~~~~~~n~lI~~~  362 (874)
                      ..|..++|...+.+....  .|+.. .|.        .++.++|...+...   . .+...+           ..+-..+
T Consensus       181 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-----------~~l~~~~  247 (388)
T d1w3ba_         181 AQGEIWLAIHHFEKAVTL--DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH-----------GNLACVY  247 (388)
T ss_dssp             TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH-----------HHHHHHH
T ss_pred             ccCcHHHHHHHHHHHHHh--CcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHH-----------HHHHHHH
Confidence            788888888888877664  34432 221        67777888777766   2 233344           5566788


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHH
Q 002846          363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKAC  442 (874)
Q Consensus       363 ~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~  442 (874)
                      .+.|++++|.+.|++..+.. +-+..+|..+...+...|+.++|.+.++..... .+.+...+..+...+.+.|+.++|.
T Consensus       248 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~  325 (388)
T d1w3ba_         248 YEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAV  325 (388)
T ss_dssp             HHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-CCccchhhhHHHHHHHHCCCHHHHH
Confidence            89999999999999988753 335778999999999999999999999988765 3456678888889999999999999


Q ss_pred             HHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          443 SVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       443 ~l~~eM~~~Gv~Pd-~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      +.|++..+.  .|+ ...|..|-..|.+.|++++|...|++..+.
T Consensus       326 ~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l  368 (388)
T d1w3ba_         326 RLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI  368 (388)
T ss_dssp             HHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            999998764  454 567888888999999999999999998765

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=9.9e-06  Score=84.15  Aligned_cols=238  Identities=12%  Similarity=0.054  Sum_probs=170.5

Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchh
Q 002846          200 MCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNG  279 (874)
Q Consensus       200 a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~v  279 (874)
                      .+.+.|++++|+..|+++.+.. +-+...|..+-.++.          ..|+.++|...|.       ...+. .-.+..
T Consensus        28 ~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~----------~~~~~~~A~~~~~-------~al~~-~p~~~~   88 (323)
T d1fcha_          28 RRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQA----------ENEQELLAISALR-------RCLEL-KPDNQT   88 (323)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH----------HTTCHHHHHHHHH-------HHHHH-CTTCHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH----------HcCChHHHHHHHH-------hhhcc-cccccc
Confidence            4678999999999999998753 224667777777777          7899999999995       33322 222455


Q ss_pred             hhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHH
Q 002846          280 QLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRL  359 (874)
Q Consensus       280 tyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI  359 (874)
                      .|..+...      +...|++++|.+.+.+.....  |+....... .....     ...+...+           ...+
T Consensus        89 ~~~~la~~------~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~-~~~~~-----~~~~~~~~-----------~~~~  143 (323)
T d1fcha_          89 ALMALAVS------FTNESLQRQACEILRDWLRYT--PAYAHLVTP-AEEGA-----GGAGLGPS-----------KRIL  143 (323)
T ss_dssp             HHHHHHHH------HHHTTCHHHHHHHHHHHHHTS--TTTGGGCC--------------------------------CTT
T ss_pred             cccccccc------ccccccccccccchhhHHHhc--cchHHHHHh-hhhhh-----hhcccccc-----------hhhH
Confidence            67777777      999999999999999887652  322111000 00000     00000111           2233


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhCCC
Q 002846          360 SEDAKKYAFQRGFEIYEKMCLDE-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGD  437 (874)
Q Consensus       360 ~~~~k~g~~~~A~~lf~~M~~~G-v~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd-~~tYn~LI~a~~k~G~  437 (874)
                      ..+.+.+...+|.+.|....... -.++..++..+...+...|++++|...|++....  .|+ ...|..+-..|.+.|+
T Consensus       144 ~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~  221 (323)
T d1fcha_         144 GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQ  221 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhccccccc
Confidence            44556677888999998776532 3456788899999999999999999999998765  344 5667778888999999


Q ss_pred             hhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 002846          438 VDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRT  485 (874)
Q Consensus       438 ~~~A~~l~~eM~~~Gv~P-d~~ty~~LI~~~~~~G~~d~A~~ll~~M~~  485 (874)
                      +++|.+.|+...+..  | +...|..|-.+|.+.|++++|...|.+..+
T Consensus       222 ~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~  268 (323)
T d1fcha_         222 SEEAVAAYRRALELQ--PGYIRSRYNLGISCINLGAHREAVEHFLEALN  268 (323)
T ss_dssp             HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHh--hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            999999999988743  5 466788899999999999999999988665

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=0.00011  Score=75.96  Aligned_cols=232  Identities=9%  Similarity=-0.072  Sum_probs=157.6

Q ss_pred             HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 002846          159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS  238 (874)
Q Consensus       159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~  238 (874)
                      ...+.++.++|...|+...+..       +-+...|..+-..|...|++++|+..|.+..+.. +-+...|..+..++. 
T Consensus        28 ~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~-   98 (323)
T d1fcha_          28 RRLQEGDLPNAVLLFEAAVQQD-------PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT-   98 (323)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHSC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccc-
Confidence            3558899999999999986532       1235788899999999999999999999988643 224566777777777 


Q ss_pred             cccCCCcccCCCCHHHHHHHHhhcccCchhhhhc-CCCCchhh-------hHhhhcCcccChhhhhcCChHHHHHHHHHH
Q 002846          239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS-RDMDNNGQ-------LDYGSSPMIDKLESNSSYRFDDLDSTFNEK  310 (874)
Q Consensus       239 ~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~-~gi~d~vt-------yn~LI~~~~~~~~~~~~g~~e~A~~lf~eM  310 (874)
                               ..|+.++|...+.       +.... ........       +..+.........+...+.+.+|...|.+.
T Consensus        99 ---------~~~~~~~A~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a  162 (323)
T d1fcha_          99 ---------NESLQRQACEILR-------DWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAA  162 (323)
T ss_dssp             ---------HTTCHHHHHHHHH-------HHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------ccccccccccchh-------hHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHH
Confidence                     7899999999985       22211 00000000       000000001111133344556666666655


Q ss_pred             HHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 002846          311 ENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASL  390 (874)
Q Consensus       311 ~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~ty  390 (874)
                      ....  |+..                   +...+           ..+-..+...|++++|...|++..... +-+..+|
T Consensus       163 l~~~--p~~~-------------------~~~~~-----------~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~  209 (323)
T d1fcha_         163 VRLD--PTSI-------------------DPDVQ-----------CGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLW  209 (323)
T ss_dssp             HHHS--TTSC-------------------CHHHH-----------HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred             HHHh--hccc-------------------ccccc-----------hhhHHHHHHHHHHhhhhcccccccccc-cccccch
Confidence            4431  2111                   11122           455567788999999999999987653 2357789


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhCCChhHHHHHHHHHHH
Q 002846          391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLE  450 (874)
Q Consensus       391 n~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd-~~tYn~LI~a~~k~G~~~~A~~l~~eM~~  450 (874)
                      ..+-..|...|++++|.+.|++..+.  .|+ ...|..+-..|.+.|+.++|.+.|+...+
T Consensus       210 ~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~  268 (323)
T d1fcha_         210 NKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALN  268 (323)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hhhhhcccccccchhHHHHHHHHHHH--hhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            99999999999999999999998765  354 55677788899999999999999988765

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.77  E-value=0.00082  Score=69.58  Aligned_cols=129  Identities=12%  Similarity=0.076  Sum_probs=94.3

Q ss_pred             chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 002846          356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRM-AMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN  434 (874)
Q Consensus       356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~-~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k  434 (874)
                      ...+..+.+.|.+++|.++|+.+...+.. +...|-..... +...|+.+.|..+|+.+... ..-+...|...+..+.+
T Consensus       138 ~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~  215 (308)
T d2onda1         138 IQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSH  215 (308)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHH
Confidence            56667777788888888888888766532 33333333332 34467888999999888875 33345678888888888


Q ss_pred             CCChhHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          435 NGDVDKACSVEEHMLEHG-VYPE--EPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       435 ~G~~~~A~~l~~eM~~~G-v~Pd--~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      .|+++.|..+|+...... ..|+  ...|...+..-...|+.+.+..+.+++.+.
T Consensus       216 ~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~  270 (308)
T d2onda1         216 LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             TCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            999999999999877653 4443  457888888888889999999999888765

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.53  E-value=0.0027  Score=65.47  Aligned_cols=86  Identities=15%  Similarity=0.111  Sum_probs=67.2

Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCC--cccHHHHHHHHHhCCChhH
Q 002846          364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-INPR--LRSYGPALSVFCNNGDVDK  440 (874)
Q Consensus       364 k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~G-i~Pd--~~tYn~LI~a~~k~G~~~~  440 (874)
                      ..|+.+.|..+|+.+... .+-+...|...++.+...|+++.|..+|++..... ..|+  ...|...+..--..|+++.
T Consensus       181 ~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~  259 (308)
T d2onda1         181 CSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLAS  259 (308)
T ss_dssp             TSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHH
T ss_pred             hccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHH
Confidence            347888899999888875 34467788999999999999999999999876653 4444  2367777777778899999


Q ss_pred             HHHHHHHHHH
Q 002846          441 ACSVEEHMLE  450 (874)
Q Consensus       441 A~~l~~eM~~  450 (874)
                      +..+++.|.+
T Consensus       260 ~~~~~~r~~~  269 (308)
T d2onda1         260 ILKVEKRRFT  269 (308)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999888765

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=97.47  E-value=0.0057  Score=61.72  Aligned_cols=276  Identities=9%  Similarity=-0.025  Sum_probs=173.7

Q ss_pred             HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCH----HHHHHHH
Q 002846          159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGI-KLGQ----YHYNVLL  233 (874)
Q Consensus       159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi-~pd~----~tyn~LL  233 (874)
                      .....|+.++|.+++++....-  |+.........++.+-..|...|++++|+..|++.....- .++.    ..+..+-
T Consensus        21 ~~~~~g~~~~A~~~~~~aL~~~--~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~   98 (366)
T d1hz4a_          21 VAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS   98 (366)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHhhC--cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence            4557899999999999875532  2210011134677777889999999999999999874211 1222    2233333


Q ss_pred             HHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCC----chhhhHhhhcCcccChhhhhcCChHHHHHHHHH
Q 002846          234 YLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD----NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNE  309 (874)
Q Consensus       234 ~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~----d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~e  309 (874)
                      ..+.          ..|++..+...+.-.    -.+....+..    ....+..+-..      +...|+++.|...+..
T Consensus        99 ~~~~----------~~~~~~~a~~~~~~a----l~~~~~~~~~~~~~~~~~~~~la~~------~~~~~~~~~a~~~~~~  158 (366)
T d1hz4a_          99 EILF----------AQGFLQTAWETQEKA----FQLINEQHLEQLPMHEFLVRIRAQL------LWAWARLDEAEASARS  158 (366)
T ss_dssp             HHHH----------HTTCHHHHHHHHHHH----HHHHHHTTCTTSTHHHHHHHHHHHH------HHHTTCHHHHHHHHHH
T ss_pred             HHHH----------HHHHHHHHHHHHHHH----HHHhHhcccchhhHHHHHHHHHHHH------HHHhcchhhhHHHHHH
Confidence            3444          668888888887411    0111111111    11234444445      7788999999999988


Q ss_pred             HHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHC----CCCC
Q 002846          310 KENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD----EVPM  385 (874)
Q Consensus       310 M~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~----Gv~P  385 (874)
                      .....-..+....       +           ..+           ..+...+...+....+...+.+....    +..+
T Consensus       159 ~~~~~~~~~~~~~-------~-----------~~~-----------~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~  209 (366)
T d1hz4a_         159 GIEVLSSYQPQQQ-------L-----------QCL-----------AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHS  209 (366)
T ss_dssp             HHHHTTTSCGGGG-------H-----------HHH-----------HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCH
T ss_pred             HHHHhhhhhhhhH-------H-----------HHH-----------HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccC
Confidence            7765322111111       0           011           33445566778888888888765541    2111


Q ss_pred             --CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---cccHHHHHHHHHhCCChhHHHHHHHHHHH----cCCCCC
Q 002846          386 --NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR---LRSYGPALSVFCNNGDVDKACSVEEHMLE----HGVYPE  456 (874)
Q Consensus       386 --d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd---~~tYn~LI~a~~k~G~~~~A~~l~~eM~~----~Gv~Pd  456 (874)
                        ....+..+...+...|+++.|...+..........+   ...+..+-..+...|+.++|...++....    .+..|+
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  289 (366)
T d1hz4a_         210 DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSD  289 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             chHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChH
Confidence              134566777788899999999999987654322222   23344566788899999999999988753    354454


Q ss_pred             H-HHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 002846          457 E-PELEALLRVSVEAGKGDRVYYLLHKLRT  485 (874)
Q Consensus       457 ~-~ty~~LI~~~~~~G~~d~A~~ll~~M~~  485 (874)
                      . ..+..+-..|.+.|+.++|.+.|.+-..
T Consensus       290 ~~~~~~~la~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         290 LNRNLLLLNQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3 4566677888999999999999987644

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.022  Score=58.84  Aligned_cols=213  Identities=7%  Similarity=-0.029  Sum_probs=142.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcccCCCcccCCC-CHHHHHHHHhhcccCchhhh
Q 002846          193 QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQY-HYNVLLYLCSSAAVGVVKPAKSG-SGMRTLDTFEVSTMNSTELG  270 (874)
Q Consensus       193 tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~-tyn~LL~a~~~~~~~~~~~~k~G-~~~~A~~vf~v~~~~s~em~  270 (874)
                      .|+-+=..+.+.+..++|+.+++++.+.  .|+.. .|+..-.++.          ..| ++++|+..+.       ...
T Consensus        45 a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~----------~l~~~~~eal~~~~-------~al  105 (315)
T d2h6fa1          45 VYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLK----------SLQKDLHEEMNYIT-------AII  105 (315)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH----------HTTCCHHHHHHHHH-------HHH
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHH----------HhCcCHHHHHHHHH-------HHH
Confidence            4445545577889999999999999974  45544 5555555555          334 5899999985       332


Q ss_pred             hcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccc
Q 002846          271 DSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID  350 (874)
Q Consensus       271 ~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~  350 (874)
                      .. .-.+..+|+.+-..      +.+.|++++|+..|..+.+..  |+                     +...|      
T Consensus       106 ~~-~p~~~~a~~~~~~~------~~~l~~~~eAl~~~~kal~~d--p~---------------------n~~a~------  149 (315)
T d2h6fa1         106 EE-QPKNYQVWHHRRVL------VEWLRDPSQELEFIADILNQD--AK---------------------NYHAW------  149 (315)
T ss_dssp             HH-CTTCHHHHHHHHHH------HHHHTCCTTHHHHHHHHHHHC--TT---------------------CHHHH------
T ss_pred             HH-HHhhhhHHHHHhHH------HHhhccHHHHHHHHhhhhhhh--hc---------------------chHHH------
Confidence            22 22356667777666      888899999999999887752  22                     12223      


Q ss_pred             cCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------hhHHHHHHHHHHHCCCCCC-cc
Q 002846          351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD------GDMAFDMVKRMKSLGINPR-LR  423 (874)
Q Consensus       351 ~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~------~d~A~~l~~~M~~~Gi~Pd-~~  423 (874)
                           .-+-..+.+.|++++|++.|+.+.+.. +-+...|+.+-..+.+.+.      +++|++.+....+.  .|+ ..
T Consensus       150 -----~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~--~P~~~~  221 (315)
T d2h6fa1         150 -----QHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNES  221 (315)
T ss_dssp             -----HHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHH
T ss_pred             -----HHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHh--CCCchH
Confidence                 556677788899999999999998864 3367788877777666665      56788888776655  354 45


Q ss_pred             cHHHHHHHHHhCCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHh
Q 002846          424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVY-PEEPELEALLRVSVE  469 (874)
Q Consensus       424 tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~-Pd~~ty~~LI~~~~~  469 (874)
                      .|+-+-. ++.....+++.+.++...+..-. .+...+..+...|..
T Consensus       222 ~~~~l~~-ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~  267 (315)
T d2h6fa1         222 AWNYLKG-ILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED  267 (315)
T ss_dssp             HHHHHHH-HHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHH-HHHhcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence            5554433 44555567788888777654322 245566777777644

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=96.64  E-value=0.094  Score=52.18  Aligned_cols=236  Identities=14%  Similarity=0.011  Sum_probs=152.0

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhc
Q 002846          199 DMCSKRGDVMGAIRLYDKAQREGIKLG------QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS  272 (874)
Q Consensus       199 ~a~~k~G~~~~Al~lf~~M~~~Gi~pd------~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~  272 (874)
                      ..+...|++++|+.+|++.....  |+      ...++.+-.++.          ..|++++|...|...    .++...
T Consensus        20 ~~~~~~g~~~~A~~~~~~aL~~~--~~~~~~~~~~a~~~lg~~~~----------~~g~~~~A~~~~~~a----~~~~~~   83 (366)
T d1hz4a_          20 QVAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLH----------CKGELTRSLALMQQT----EQMARQ   83 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHH----------HHTCHHHHHHHHHHH----HHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhC--cCCCcHHHHHHHHHHHHHHH----------HCCCHHHHHHHHHHH----HHHHHh
Confidence            34678999999999999987642  32      123444444555          679999999999511    111111


Q ss_pred             CCCC--chhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcC---CCCCeeeeccccHHHHHHhhhcCCCCccccccc
Q 002846          273 RDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG---QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDW  347 (874)
Q Consensus       273 ~gi~--d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~G---i~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w  347 (874)
                      .+-.  ....+..+...      +...|++..|...+.+.....   ..+....       .+           ..+   
T Consensus        84 ~~~~~~~~~~~~~~~~~------~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~-------~~-----------~~~---  136 (366)
T d1hz4a_          84 HDVWHYALWSLIQQSEI------LFAQGFLQTAWETQEKAFQLINEQHLEQLPM-------HE-----------FLV---  136 (366)
T ss_dssp             TTCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTH-------HH-----------HHH---
T ss_pred             hcchHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhHhcccchhhH-------HH-----------HHH---
Confidence            1111  12235555555      788899999988887654321   0000000       00           011   


Q ss_pred             ccccCCccchHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCC
Q 002846          348 SIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD----EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GIN  419 (874)
Q Consensus       348 ~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~----Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~----Gi~  419 (874)
                              ..+-..+...|+++.|...+......    +......++..+...+...++...+...+.+....    +..
T Consensus       137 --------~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~  208 (366)
T d1hz4a_         137 --------RIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYH  208 (366)
T ss_dssp             --------HHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCC
T ss_pred             --------HHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccc
Confidence                    33445677889999999999887753    33344567777888888999999999888765542    111


Q ss_pred             CC--cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 002846          420 PR--LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVY---PEEPELEALLRVSVEAGKGDRVYYLLHKLRT  485 (874)
Q Consensus       420 Pd--~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~---Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~  485 (874)
                      +.  ...+..+...+...|+.++|...+.........   .....+..+-..+...|+.++|...+++...
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  279 (366)
T d1hz4a_         209 SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNE  279 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            11  223455566777899999999999876544222   2345566677889999999999999998754

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.43  E-value=0.059  Score=54.38  Aligned_cols=121  Identities=11%  Similarity=0.052  Sum_probs=77.6

Q ss_pred             hcCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCccc------HHHHHHHH
Q 002846          364 KKYAFQRGFEIYEKMCL----DEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS------YGPALSVF  432 (874)
Q Consensus       364 k~g~~~~A~~lf~~M~~----~Gv~P-d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~t------Yn~LI~a~  432 (874)
                      ..|++++|.+.|.+...    .+-.+ -..+|..+...+...|++++|..+|++............      |..++..+
T Consensus       130 ~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (290)
T d1qqea_         130 DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQ  209 (290)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHH
Confidence            35888888888876543    22222 134678889999999999999999999876532222111      23344556


Q ss_pred             HhCCChhHHHHHHHHHHHcCCC-CC---HHHHHHHHHHHHh--cCCchHHHHHHHHHH
Q 002846          433 CNNGDVDKACSVEEHMLEHGVY-PE---EPELEALLRVSVE--AGKGDRVYYLLHKLR  484 (874)
Q Consensus       433 ~k~G~~~~A~~l~~eM~~~Gv~-Pd---~~ty~~LI~~~~~--~G~~d~A~~ll~~M~  484 (874)
                      ...|+.+.|...++...+.... ++   ......|+.++-.  .+.+++|...|+++.
T Consensus       210 l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~  267 (290)
T d1qqea_         210 LAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM  267 (290)
T ss_dssp             HHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred             HHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            6789999999999988664311 12   2344566666644  234677777776544

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.075  Score=54.58  Aligned_cols=186  Identities=9%  Similarity=0.009  Sum_probs=121.9

Q ss_pred             CCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCC-hHHHHHHHHHHHHcCCCCCeeeecccc
Q 002846          248 KSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYR-FDDLDSTFNEKENLGQFSNGHMKLNSQ  326 (874)
Q Consensus       248 k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~-~e~A~~lf~eM~~~Gi~Pd~~ty~~g~  326 (874)
                      +.+..++|+..+.       ...+. .-.+...|+..-..      +...|+ +++|+..++......  |+.       
T Consensus        55 ~~e~~~~Al~~~~-------~ai~l-nP~~~~a~~~r~~~------l~~l~~~~~eal~~~~~al~~~--p~~-------  111 (315)
T d2h6fa1          55 RDERSERAFKLTR-------DAIEL-NAANYTVWHFRRVL------LKSLQKDLHEEMNYITAIIEEQ--PKN-------  111 (315)
T ss_dssp             HTCCCHHHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHHTTCCHHHHHHHHHHHHHHC--TTC-------
T ss_pred             hCCchHHHHHHHH-------HHHHH-CCCChHHHHHHHHH------HHHhCcCHHHHHHHHHHHHHHH--Hhh-------
Confidence            4567777877774       33332 22244456666555      555553 777877777665542  221       


Q ss_pred             HHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 002846          327 LLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMA  406 (874)
Q Consensus       327 ~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A  406 (874)
                                    ...|           +.+-..+.+.|+.++|++.|+++.+.. +-+...|+.+...+...|++++|
T Consensus       112 --------------~~a~-----------~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~A  165 (315)
T d2h6fa1         112 --------------YQVW-----------HHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNE  165 (315)
T ss_dssp             --------------HHHH-----------HHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTH
T ss_pred             --------------hhHH-----------HHHhHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHH
Confidence                          2223           445556677889999999999988753 34688999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCcccHHHHHHHHHhCCC------hhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCchHHHHH
Q 002846          407 FDMVKRMKSLGINPRLRSYGPALSVFCNNGD------VDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYL  479 (874)
Q Consensus       407 ~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~------~~~A~~l~~eM~~~Gv~P-d~~ty~~LI~~~~~~G~~d~A~~l  479 (874)
                      .+.++.+.+... -+...|+.+-..+.+.+.      .++|.+.+....+..  | +...|+.+-..+. ....+++...
T Consensus       166 l~~~~~al~~~p-~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~--P~~~~~~~~l~~ll~-~~~~~~~~~~  241 (315)
T d2h6fa1         166 LQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV--PHNESAWNYLKGILQ-DRGLSKYPNL  241 (315)
T ss_dssp             HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHT-TTCGGGCHHH
T ss_pred             HHHHHHHHHHCC-ccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhC--CCchHHHHHHHHHHH-hcChHHHHHH
Confidence            999999887632 244556655444555544      567888887777644  5 5666766655444 4446777787


Q ss_pred             HHHHHhc
Q 002846          480 LHKLRTS  486 (874)
Q Consensus       480 l~~M~~~  486 (874)
                      ++.....
T Consensus       242 ~~~~~~l  248 (315)
T d2h6fa1         242 LNQLLDL  248 (315)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            7777665

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.95  E-value=0.039  Score=48.04  Aligned_cols=88  Identities=13%  Similarity=0.073  Sum_probs=57.0

Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhH
Q 002846          361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK  440 (874)
Q Consensus       361 ~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~  440 (874)
                      .+.+.|++++|+.+|++..... +-+...|..+-.+|.+.|++++|...+....+.. +.+...|..+-.++...|++++
T Consensus        12 ~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~~   89 (117)
T d1elwa_          12 KALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFEE   89 (117)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCHHH
Confidence            3456677777777777766543 3355667777777777777777777777666553 2345556666666667777777


Q ss_pred             HHHHHHHHHH
Q 002846          441 ACSVEEHMLE  450 (874)
Q Consensus       441 A~~l~~eM~~  450 (874)
                      |...|+...+
T Consensus        90 A~~~~~~a~~   99 (117)
T d1elwa_          90 AKRTYEEGLK   99 (117)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
Confidence            7777766665

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.046  Score=50.00  Aligned_cols=89  Identities=12%  Similarity=0.084  Sum_probs=63.5

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhCCCh
Q 002846          360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDV  438 (874)
Q Consensus       360 ~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd-~~tYn~LI~a~~k~G~~  438 (874)
                      ..|.+.|++++|...|.+..... +-+...|..+-.+|...|++++|...|+...+..  |+ ...|..+..+|...|++
T Consensus        18 n~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~--p~~~~a~~~~g~~~~~~g~~   94 (159)
T d1a17a_          18 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGKF   94 (159)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc--ccchHHHHHHHHHHHHcCCH
Confidence            34567778888888887777654 3466777777777778888888888887776652  43 45677777777777777


Q ss_pred             hHHHHHHHHHHHc
Q 002846          439 DKACSVEEHMLEH  451 (874)
Q Consensus       439 ~~A~~l~~eM~~~  451 (874)
                      ++|...++.....
T Consensus        95 ~eA~~~~~~a~~~  107 (159)
T d1a17a_          95 RAALRDYETVVKV  107 (159)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc
Confidence            7777777777664

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.57  E-value=0.1  Score=49.45  Aligned_cols=121  Identities=11%  Similarity=-0.010  Sum_probs=94.9

Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhH
Q 002846          361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK  440 (874)
Q Consensus       361 ~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~  440 (874)
                      .+...|+++.|++.|+++    ..|+..+|..+-.+|...|++++|.+.|++-.+.. +-+...|..+=.+|.+.|+.++
T Consensus        14 ~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~   88 (192)
T d1hh8a_          14 LAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDL   88 (192)
T ss_dssp             HHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHH
Confidence            346789999999999864    35788899999999999999999999999988753 2235677777788889999999


Q ss_pred             HHHHHHHHHHc------------CCCC--C-HHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          441 ACSVEEHMLEH------------GVYP--E-EPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       441 A~~l~~eM~~~------------Gv~P--d-~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      |...|+.....            |+..  + ..++..+-.++.+.|++++|.+.|......
T Consensus        89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~  149 (192)
T d1hh8a_          89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  149 (192)
T ss_dssp             HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            99999887642            1111  1 234445566788999999999999988776

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.41  E-value=0.064  Score=50.07  Aligned_cols=86  Identities=9%  Similarity=0.024  Sum_probs=46.1

Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhCCChh
Q 002846          361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVD  439 (874)
Q Consensus       361 ~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd-~~tYn~LI~a~~k~G~~~  439 (874)
                      .|.+.|++++|+..|.+..... +-+...|+.+-.+|.+.|++++|...|+...+  +.|+ ...|..+-.+|.+.|+++
T Consensus        13 ~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~lg~~~~~l~~~~   89 (201)
T d2c2la1          13 RLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQCQLEMESYD   89 (201)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHHHHHHHHHHCCCHH
Confidence            3455566666666665554432 23455555566666666666666666655443  2343 334444555555555555


Q ss_pred             HHHHHHHHHH
Q 002846          440 KACSVEEHML  449 (874)
Q Consensus       440 ~A~~l~~eM~  449 (874)
                      +|...|+...
T Consensus        90 ~A~~~~~~al   99 (201)
T d2c2la1          90 EAIANLQRAY   99 (201)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555555443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.31  E-value=0.096  Score=45.33  Aligned_cols=91  Identities=13%  Similarity=0.037  Sum_probs=78.1

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCc
Q 002846          394 GRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG  473 (874)
Q Consensus       394 I~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~  473 (874)
                      -..+.+.|++++|..+|.+..+.. +-+...|..+=.+|.+.|+.++|...+....+.. ..+...|..+-.++...|++
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~   87 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF   87 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCH
Confidence            456788999999999999988762 2345668888889999999999999999998764 35778899999999999999


Q ss_pred             hHHHHHHHHHHhc
Q 002846          474 DRVYYLLHKLRTS  486 (874)
Q Consensus       474 d~A~~ll~~M~~~  486 (874)
                      ++|...|++....
T Consensus        88 ~~A~~~~~~a~~~  100 (117)
T d1elwa_          88 EEAKRTYEEGLKH  100 (117)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999876

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.29  E-value=0.047  Score=51.07  Aligned_cols=98  Identities=12%  Similarity=-0.040  Sum_probs=81.7

Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHH
Q 002846          385 MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEAL  463 (874)
Q Consensus       385 Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~P-d~~ty~~L  463 (874)
                      |+...+--.=..|.+.|++++|+..|.+..... +-+...|+.+-.+|.+.|++++|...|+...+  +.| +...|..+
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~l   78 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFL   78 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHHHH
Confidence            555566666678999999999999999887653 23466678788899999999999999999876  446 57788999


Q ss_pred             HHHHHhcCCchHHHHHHHHHHh
Q 002846          464 LRVSVEAGKGDRVYYLLHKLRT  485 (874)
Q Consensus       464 I~~~~~~G~~d~A~~ll~~M~~  485 (874)
                      -.+|.+.|++++|...|.+...
T Consensus        79 g~~~~~l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          79 GQCQLEMESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999999999999998765

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.24  E-value=0.16  Score=48.10  Aligned_cols=98  Identities=7%  Similarity=-0.104  Sum_probs=74.3

Q ss_pred             chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC------------CCCCc-
Q 002846          356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG------------INPRL-  422 (874)
Q Consensus       356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~G------------i~Pd~-  422 (874)
                      .-+=..|.+.|++++|.+.|++-.+.. +-+...|..+-.+|.+.|+.++|...|++-....            +.... 
T Consensus        40 ~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~  118 (192)
T d1hh8a_          40 FNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLF  118 (192)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEE
T ss_pred             HHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccc
Confidence            445567889999999999999988754 3467889999999999999999999999876531            11111 


Q ss_pred             --ccHHHHHHHHHhCCChhHHHHHHHHHHHcCCC
Q 002846          423 --RSYGPALSVFCNNGDVDKACSVEEHMLEHGVY  454 (874)
Q Consensus       423 --~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~  454 (874)
                        .++..+=.++.+.|++++|.+.+.........
T Consensus       119 ~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~  152 (192)
T d1hh8a_         119 ACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE  152 (192)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence              22334556788999999999999887765433

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=95.23  E-value=0.24  Score=47.70  Aligned_cols=122  Identities=11%  Similarity=-0.021  Sum_probs=90.5

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhCCCh
Q 002846          360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDV  438 (874)
Q Consensus       360 ~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd-~~tYn~LI~a~~k~G~~  438 (874)
                      ..|.+.|++++|.+.|++..... +-+..+|+.+-.+|.+.|++++|...|++..+.  .|+ ..+|..+-..|...|+.
T Consensus        45 ~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~  121 (259)
T d1xnfa_          45 VLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRD  121 (259)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCH
T ss_pred             HHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH--HhhhhhhHHHHHHHHHHHhhH
Confidence            46778899999999999888743 336788999999999999999999999998875  344 45677777888899999


Q ss_pred             hHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          439 DKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       439 ~~A~~l~~eM~~~Gv~P-d~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      ++|...|+...+..  | +......+..++.+.+..+.+..+.......
T Consensus       122 ~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (259)
T d1xnfa_         122 KLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS  168 (259)
T ss_dssp             HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhhc--cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Confidence            99999999887754  4 3333333444445555555555555555543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=94.99  E-value=0.64  Score=44.52  Aligned_cols=184  Identities=9%  Similarity=0.004  Sum_probs=113.8

Q ss_pred             CCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccH
Q 002846          248 KSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQL  327 (874)
Q Consensus       248 k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~  327 (874)
                      +.|+.++|...|.       +.... .-.+..+|+.+=.+      +.+.|++++|...|++.....  |+..       
T Consensus        49 ~~g~~~~A~~~~~-------~al~l-~p~~~~a~~~lg~~------~~~~g~~~~A~~~~~~al~~~--p~~~-------  105 (259)
T d1xnfa_          49 SLGLRALARNDFS-------QALAI-RPDMPEVFNYLGIY------LTQAGNFDAAYEAFDSVLELD--PTYN-------  105 (259)
T ss_dssp             HTTCHHHHHHHHH-------HHHHH-CCCCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHC--TTCT-------
T ss_pred             HCCCHHHHHHHHH-------Hhhcc-CCCCHHHHhhhchH------HHHHHHHHHhhhhhhHHHHHH--hhhh-------
Confidence            6799999999995       33322 22256668877777      999999999999999888752  3221       


Q ss_pred             HHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 002846          328 LDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAF  407 (874)
Q Consensus       328 ~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~  407 (874)
                                    ..|           ..+-..|...|+.++|.+.|+...+.. +.+......+..++.+.+..+.+.
T Consensus       106 --------------~a~-----------~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~  159 (259)
T d1xnfa_         106 --------------YAH-----------LNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKE  159 (259)
T ss_dssp             --------------HHH-----------HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHH
T ss_pred             --------------hhH-----------HHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHH
Confidence                          112           445566788999999999999887754 234555555555556666666666


Q ss_pred             HHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcC-----CCCC-HHHHHHHHHHHHhcCCchHHHHHHH
Q 002846          408 DMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG-----VYPE-EPELEALLRVSVEAGKGDRVYYLLH  481 (874)
Q Consensus       408 ~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~G-----v~Pd-~~ty~~LI~~~~~~G~~d~A~~ll~  481 (874)
                      .+.......  .++...++ ++..+.  +...... .++......     ..|+ ..+|..|-..|...|+.++|...|+
T Consensus       160 ~~~~~~~~~--~~~~~~~~-~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~  233 (259)
T d1xnfa_         160 VLKQHFEKS--DKEQWGWN-IVEFYL--GNISEQT-LMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFK  233 (259)
T ss_dssp             HHHHHHHHS--CCCSTHHH-HHHHHT--TSSCHHH-HHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHhhcc--chhhhhhh-HHHHHH--HHHHHHH-HHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            666665543  22222222 333332  2222111 122211111     1122 2355567778889999999999999


Q ss_pred             HHHhc
Q 002846          482 KLRTS  486 (874)
Q Consensus       482 ~M~~~  486 (874)
                      .....
T Consensus       234 ~al~~  238 (259)
T d1xnfa_         234 LAVAN  238 (259)
T ss_dssp             HHHTT
T ss_pred             HHHHc
Confidence            98876

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.99  E-value=0.036  Score=49.02  Aligned_cols=101  Identities=8%  Similarity=-0.027  Sum_probs=60.0

Q ss_pred             chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHHCCCCCCc-ccHHHHHHH
Q 002846          356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDG---DMAFDMVKRMKSLGINPRL-RSYGPALSV  431 (874)
Q Consensus       356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~---d~A~~l~~~M~~~Gi~Pd~-~tYn~LI~a  431 (874)
                      ..+++.+...+++++|.+.|+.....+ +.+..++..+..++.+.++.   ++|..+|++.....-.|+. .+|..|=.+
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~   81 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            445666667777777777777766644 34556666666666654443   3577777666554332332 234445556


Q ss_pred             HHhCCChhHHHHHHHHHHHcCCCCCHHH
Q 002846          432 FCNNGDVDKACSVEEHMLEHGVYPEEPE  459 (874)
Q Consensus       432 ~~k~G~~~~A~~l~~eM~~~Gv~Pd~~t  459 (874)
                      |.+.|++++|.+.|+...+.  .|+-..
T Consensus        82 y~~~g~~~~A~~~~~~aL~~--~P~~~~  107 (122)
T d1nzna_          82 NYRLKEYEKALKYVRGLLQT--EPQNNQ  107 (122)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred             HHHHhhhHHHHHHHHHHHHh--CcCCHH
Confidence            66677777777777776663  355443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.78  E-value=0.15  Score=46.39  Aligned_cols=91  Identities=10%  Similarity=-0.039  Sum_probs=77.0

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCc
Q 002846          394 GRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG  473 (874)
Q Consensus       394 I~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~  473 (874)
                      -..|.+.|++++|...|++..+.. +-+...|..+-..|...|++++|...|+...+.. .-+...|..+..++...|++
T Consensus        17 gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~   94 (159)
T d1a17a_          17 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF   94 (159)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCH
Confidence            346789999999999999988763 2346667777788889999999999999998754 23557899999999999999


Q ss_pred             hHHHHHHHHHHhc
Q 002846          474 DRVYYLLHKLRTS  486 (874)
Q Consensus       474 d~A~~ll~~M~~~  486 (874)
                      ++|...+.+....
T Consensus        95 ~eA~~~~~~a~~~  107 (159)
T d1a17a_          95 RAALRDYETVVKV  107 (159)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc
Confidence            9999999999886

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=94.53  E-value=0.069  Score=45.96  Aligned_cols=86  Identities=13%  Similarity=0.140  Sum_probs=53.2

Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhH
Q 002846          361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK  440 (874)
Q Consensus       361 ~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~  440 (874)
                      .+.+.|++++|...|++..... +-+..+|..+-.++.+.|++++|...|+...+.. +-+...|..+-..|...|+.++
T Consensus        25 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~~~  102 (112)
T d1hxia_          25 SMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANA  102 (112)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCHHH
Confidence            3445677777777777766543 2246667777777777777777777777665542 1234555555566666666666


Q ss_pred             HHHHHHHH
Q 002846          441 ACSVEEHM  448 (874)
Q Consensus       441 A~~l~~eM  448 (874)
                      |.+.+++.
T Consensus       103 A~~~l~~~  110 (112)
T d1hxia_         103 ALASLRAW  110 (112)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66666553

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.26  E-value=0.36  Score=45.21  Aligned_cols=79  Identities=9%  Similarity=0.012  Sum_probs=55.3

Q ss_pred             cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHh-----cCCCCChhHHHHH
Q 002846          424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT-----SVRKVSPSTADVI  498 (874)
Q Consensus       424 tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~-----~~~~~sp~T~~~I  498 (874)
                      .+..+...+.+.|+.++|...++.+.... .-+...|..|+.+|.+.|+..+|.+.|++++.     -+..|++.|....
T Consensus        69 a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l~  147 (179)
T d2ff4a2          69 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN  147 (179)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHH
Confidence            45567777888888888888888887643 23777788888888888888888888887643     4455555554444


Q ss_pred             HHHHh
Q 002846          499 AKWFN  503 (874)
Q Consensus       499 ~~~~~  503 (874)
                      ....+
T Consensus       148 ~~il~  152 (179)
T d2ff4a2         148 ERILR  152 (179)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            44333

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.09  E-value=0.14  Score=51.49  Aligned_cols=165  Identities=7%  Similarity=-0.059  Sum_probs=107.8

Q ss_pred             hhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHH
Q 002846          294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE  373 (874)
Q Consensus       294 ~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~  373 (874)
                      |-..+++++|.+.|.+.......-      ......|           .+|           +-+-..|.+.|++++|.+
T Consensus        47 y~~~~~~~~A~~~y~kA~~~~~~~------~~~~~~a-----------~~~-----------~~~g~~y~~~~~~~~A~~   98 (290)
T d1qqea_          47 YRLRKELNLAGDSFLKAADYQKKA------GNEDEAG-----------NTY-----------VEAYKCFKSGGNSVNAVD   98 (290)
T ss_dssp             HHHTTCTHHHHHHHHHHHHHHHHT------TCHHHHH-----------HHH-----------HHHHHHHHHTTCHHHHHH
T ss_pred             HHHCcCHHHHHHHHHHHHHHHHHc------CCCHHHH-----------HHH-----------HHHHHHHHHhCCcHHHHH
Confidence            777888999999888765531000      0000011           122           556677888999999999


Q ss_pred             HHHHHHH----CCC-CCCHHHHHHHHHHHH-hcCChhHHHHHHHHHHHC----CCCCC-cccHHHHHHHHHhCCChhHHH
Q 002846          374 IYEKMCL----DEV-PMNEASLTAVGRMAM-SMGDGDMAFDMVKRMKSL----GINPR-LRSYGPALSVFCNNGDVDKAC  442 (874)
Q Consensus       374 lf~~M~~----~Gv-~Pd~~tyn~LI~~~~-~~G~~d~A~~l~~~M~~~----Gi~Pd-~~tYn~LI~a~~k~G~~~~A~  442 (874)
                      .++....    .|- .....++..+...|- ..|++++|.+.+.+..+.    +-.+. ..+|..+-..|...|++++|.
T Consensus        99 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~  178 (290)
T d1qqea_          99 SLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEAS  178 (290)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHH
Confidence            9986553    221 112445666666664 469999999999876532    22121 345777888999999999999


Q ss_pred             HHHHHHHHcCCCC-----CH-HHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          443 SVEEHMLEHGVYP-----EE-PELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       443 ~l~~eM~~~Gv~P-----d~-~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      .+|+.........     .. ..|..++..+...|+.+.|...|++....
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~  228 (290)
T d1qqea_         179 DIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE  228 (290)
T ss_dssp             HHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred             HHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            9999987653211     11 12233444556789999999999988765

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.82  E-value=0.096  Score=46.11  Aligned_cols=100  Identities=14%  Similarity=0.021  Sum_probs=75.9

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCC---ChhHHHHHHHHHHHcCCCCCH-HHHHHHHHH
Q 002846          391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG---DVDKACSVEEHMLEHGVYPEE-PELEALLRV  466 (874)
Q Consensus       391 n~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G---~~~~A~~l~~eM~~~Gv~Pd~-~ty~~LI~~  466 (874)
                      ..|++.+...+++++|.+.|+.....+ +.+..++..+-.++.+.+   +.++|..+|+.+....-.|+. ..|..|=.+
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~   81 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            467888899999999999999988763 234566666666777655   456799999998876533332 356677788


Q ss_pred             HHhcCCchHHHHHHHHHHhcCCCCChh
Q 002846          467 SVEAGKGDRVYYLLHKLRTSVRKVSPS  493 (874)
Q Consensus       467 ~~~~G~~d~A~~ll~~M~~~~~~~sp~  493 (874)
                      |.+.|++++|...|++..+.  .|.-.
T Consensus        82 y~~~g~~~~A~~~~~~aL~~--~P~~~  106 (122)
T d1nzna_          82 NYRLKEYEKALKYVRGLLQT--EPQNN  106 (122)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred             HHHHhhhHHHHHHHHHHHHh--CcCCH
Confidence            89999999999999999986  54433

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.61  E-value=0.24  Score=46.51  Aligned_cols=99  Identities=9%  Similarity=0.050  Sum_probs=80.0

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHC--CCC-CC------------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 002846          360 SEDAKKYAFQRGFEIYEKMCLD--EVP-MN------------------EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI  418 (874)
Q Consensus       360 ~~~~k~g~~~~A~~lf~~M~~~--Gv~-Pd------------------~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi  418 (874)
                      ......|++++|.+.|..-..-  |-. ++                  ...+..+...+...|++++|...++.+.... 
T Consensus        19 ~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~-   97 (179)
T d2ff4a2          19 VHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEH-   97 (179)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhC-
Confidence            4567889999999999887763  321 11                  1457888999999999999999999998763 


Q ss_pred             CCCcccHHHHHHHHHhCCChhHHHHHHHHHH-----HcCCCCCHHH
Q 002846          419 NPRLRSYGPALSVFCNNGDVDKACSVEEHML-----EHGVYPEEPE  459 (874)
Q Consensus       419 ~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~-----~~Gv~Pd~~t  459 (874)
                      .-+...|..++.+|.+.|+..+|.+.|+.+.     +-|+.|...+
T Consensus        98 P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          98 PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            3467889999999999999999999999874     3599998765

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=93.32  E-value=0.17  Score=43.40  Aligned_cols=88  Identities=11%  Similarity=-0.021  Sum_probs=73.3

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHCCCCC-CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 002846          393 VGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAG  471 (874)
Q Consensus       393 LI~~~~~~G~~d~A~~l~~~M~~~Gi~P-d~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G  471 (874)
                      +-..+.+.|++++|...|++....  .| +...|..+-..+.+.|++++|...|+...+.. +-+...|..|-..|...|
T Consensus        22 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g   98 (112)
T d1hxia_          22 EGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH   98 (112)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCC
Confidence            344677899999999999998876  35 46777778888999999999999999988754 235788888999999999


Q ss_pred             CchHHHHHHHHH
Q 002846          472 KGDRVYYLLHKL  483 (874)
Q Consensus       472 ~~d~A~~ll~~M  483 (874)
                      +.++|.+.|++.
T Consensus        99 ~~~~A~~~l~~~  110 (112)
T d1hxia_          99 NANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            999999999875

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.12  E-value=0.52  Score=47.68  Aligned_cols=234  Identities=8%  Similarity=-0.081  Sum_probs=130.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-HHH---HHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhh
Q 002846          195 RVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYH-YNV---LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG  270 (874)
Q Consensus       195 n~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~t-yn~---LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~  270 (874)
                      ..++...-+....++|+++++...+.  .|+..+ |+.   ++..+...   +..+...|.+++|+..+.       ...
T Consensus        33 ~~~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~---~~~~~~~~~~~~al~~~~-------~~l  100 (334)
T d1dcea1          33 QAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETE---KSPEESAALVKAELGFLE-------SCL  100 (334)
T ss_dssp             HHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTT---SCHHHHHHHHHHHHHHHH-------HHH
T ss_pred             HHHHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhh---cchHHHHHHHHHHHHHHH-------HHH
Confidence            33433333333458999999999864  466543 332   22222210   000113345667777774       322


Q ss_pred             hcCCCCchhhhHhhhcCcccChhhhhc--CChHHHHHHHHHHHHcCCCCC-eeeeccccHHHHHHhhhcCCCCccccccc
Q 002846          271 DSRDMDNNGQLDYGSSPMIDKLESNSS--YRFDDLDSTFNEKENLGQFSN-GHMKLNSQLLDGRSNLERGPDDQSRKKDW  347 (874)
Q Consensus       271 ~~~gi~d~vtyn~LI~~~~~~~~~~~~--g~~e~A~~lf~eM~~~Gi~Pd-~~ty~~g~~~eA~~l~~~m~pd~~ty~~w  347 (874)
                      .. ...+...|..+-.+      +...  +++++|...+.++....  |+ ...+                         
T Consensus       101 ~~-~pk~~~~~~~~~~~------~~~~~~~~~~~a~~~~~~al~~~--~~~~~~~-------------------------  146 (334)
T d1dcea1         101 RV-NPKSYGTWHHRCWL------LSRLPEPNWARELELCARFLEAD--ERNFHCW-------------------------  146 (334)
T ss_dssp             HH-CTTCHHHHHHHHHH------HHTCSSCCHHHHHHHHHHHHHHC--TTCHHHH-------------------------
T ss_pred             Hh-CCCcHHHHHHhhHH------HHHhccccHHHHHHHHHHHHhhC--chhhhhh-------------------------
Confidence            22 22244455555444      4444  45788998888887652  22 1111                         


Q ss_pred             ccccCCccchHH-HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-------------------------
Q 002846          348 SIDNQDADEIRL-SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG-------------------------  401 (874)
Q Consensus       348 ~i~~~~~~n~lI-~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G-------------------------  401 (874)
                              ...+ ..+-..+..++|+..++...... +-+...|+.+-..+.+.|                         
T Consensus       147 --------~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  217 (334)
T d1dcea1         147 --------DYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQN  217 (334)
T ss_dssp             --------HHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHH
T ss_pred             --------hhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHH
Confidence                    1111 22233445555555555444432 123444444444444444                         


Q ss_pred             -----ChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCchH
Q 002846          402 -----DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDR  475 (874)
Q Consensus       402 -----~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~P-d~~ty~~LI~~~~~~G~~d~  475 (874)
                           ..+++...+....... .++...+..+...+...|+.++|...+.+.....  | +...|..+-..+...|+.++
T Consensus       218 ~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~e  294 (334)
T d1dcea1         218 AFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPEN--KWCLLTIILLMRALDPLLYEKE  294 (334)
T ss_dssp             HHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHCTGGGHHH
T ss_pred             HHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC--chHHHHHHHHHHHHHHCCCHHH
Confidence                 4444444444444332 3445556667777778889999999888776533  3 34566677778889999999


Q ss_pred             HHHHHHHHHhc
Q 002846          476 VYYLLHKLRTS  486 (874)
Q Consensus       476 A~~ll~~M~~~  486 (874)
                      |.+.+++..+.
T Consensus       295 A~~~~~~ai~l  305 (334)
T d1dcea1         295 TLQYFSTLKAV  305 (334)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998876

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=92.89  E-value=0.62  Score=41.89  Aligned_cols=102  Identities=16%  Similarity=-0.004  Sum_probs=58.4

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhC
Q 002846          360 SEDAKKYAFQRGFEIYEKMCLDE----VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN  435 (874)
Q Consensus       360 ~~~~k~g~~~~A~~lf~~M~~~G----v~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~  435 (874)
                      ..+.+.|++.+|+..|.+....-    -.++.....                 ....+       ...+|+.+-.+|.+.
T Consensus        25 ~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~-----------------~~~~~-------~~~~~~Nla~~~~~l   80 (153)
T d2fbna1          25 NEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD-----------------KKKNI-------EISCNLNLATCYNKN   80 (153)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHH-----------------HHHHH-------HHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHH-----------------hhhhH-------HHHHHhhHHHHHHHh
Confidence            45678899999999998876521    111111110                 00000       112445555566666


Q ss_pred             CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       436 G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      |++++|.+.++...+.. +-+...|..+-.++...|++++|...|......
T Consensus        81 ~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l  130 (153)
T d2fbna1          81 KDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL  130 (153)
T ss_dssp             TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             cccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence            66666666666665543 225566666666666667777777776666654

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.76  E-value=0.39  Score=41.94  Aligned_cols=87  Identities=16%  Similarity=0.232  Sum_probs=57.0

Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc-------ccHHHHHHHHH
Q 002846          361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-------RSYGPALSVFC  433 (874)
Q Consensus       361 ~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~-------~tYn~LI~a~~  433 (874)
                      .+.+.|++++|++.|.+..+.. +-+..+|..+-.+|.+.|++++|.+.++++.+..- .+.       .+|..+=..+.
T Consensus        13 ~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~-~~~~~~~~~a~~~~~lg~~~~   90 (128)
T d1elra_          13 DAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR-ENREDYRQIAKAYARIGNSYF   90 (128)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHHHHHH
Confidence            4667788888888888777654 34677888888888888888888888887765310 011       23333444455


Q ss_pred             hCCChhHHHHHHHHHH
Q 002846          434 NNGDVDKACSVEEHML  449 (874)
Q Consensus       434 k~G~~~~A~~l~~eM~  449 (874)
                      ..+++++|.+.|..-.
T Consensus        91 ~~~~~~~A~~~~~kal  106 (128)
T d1elra_          91 KEEKYKDAIHFYNKSL  106 (128)
T ss_dssp             HTTCHHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHH
Confidence            5566666666665543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.75  E-value=0.41  Score=44.01  Aligned_cols=21  Identities=14%  Similarity=0.208  Sum_probs=17.1

Q ss_pred             HHHHhcCCHHHHHHHHHHHHH
Q 002846          360 SEDAKKYAFQRGFEIYEKMCL  380 (874)
Q Consensus       360 ~~~~k~g~~~~A~~lf~~M~~  380 (874)
                      ..+.+.|++++|.+.|.+...
T Consensus        21 ~~~~~~~~~~~Ai~~y~~al~   41 (170)
T d1p5qa1          21 TVYFKEGKYKQALLQYKKIVS   41 (170)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHH
Confidence            356788999999999987664

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.03  E-value=0.37  Score=42.04  Aligned_cols=100  Identities=17%  Similarity=0.187  Sum_probs=76.3

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcC--CCCC----HHHHHHHHHH
Q 002846          393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG--VYPE----EPELEALLRV  466 (874)
Q Consensus       393 LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~G--v~Pd----~~ty~~LI~~  466 (874)
                      +=..+...|++++|...|.+..+.+ +.+...|..+=.+|.+.|++++|...++.+++..  ....    ..+|..|-..
T Consensus        10 ~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~   88 (128)
T d1elra_          10 LGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS   88 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Confidence            3356889999999999999988763 2357778888899999999999999999987531  1111    2466777778


Q ss_pred             HHhcCCchHHHHHHHHHHhcCCCCChhHH
Q 002846          467 SVEAGKGDRVYYLLHKLRTSVRKVSPSTA  495 (874)
Q Consensus       467 ~~~~G~~d~A~~ll~~M~~~~~~~sp~T~  495 (874)
                      +...+++++|...|.+-...  ...++..
T Consensus        89 ~~~~~~~~~A~~~~~kal~~--~~~~~~~  115 (128)
T d1elra_          89 YFKEEKYKDAIHFYNKSLAE--HRTPDVL  115 (128)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--CCCHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHhc--CCCHHHH
Confidence            88899999999999887665  4555543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.86  E-value=0.5  Score=43.37  Aligned_cols=92  Identities=14%  Similarity=-0.008  Sum_probs=74.2

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHCC-CCCC-------------cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CH
Q 002846          393 VGRMAMSMGDGDMAFDMVKRMKSLG-INPR-------------LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EE  457 (874)
Q Consensus       393 LI~~~~~~G~~d~A~~l~~~M~~~G-i~Pd-------------~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~P-d~  457 (874)
                      .=..+.+.|++++|...|.+....- ..+.             ..+|+.+-.+|.+.|++++|...++......  | +.
T Consensus        19 ~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~--p~~~   96 (170)
T d1p5qa1          19 RGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD--SNNE   96 (170)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc--ccch
Confidence            3457888999999999998876541 1111             2345667778889999999999999988864  5 78


Q ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          458 PELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       458 ~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      ..|..+-.+|...|++++|...|++..+.
T Consensus        97 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l  125 (170)
T d1p5qa1          97 KGLSRRGEAHLAVNDFELARADFQKVLQL  125 (170)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            88888999999999999999999999876

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=91.17  E-value=1.4  Score=39.44  Aligned_cols=95  Identities=6%  Similarity=-0.190  Sum_probs=55.8

Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCch
Q 002846          395 RMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGD  474 (874)
Q Consensus       395 ~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d  474 (874)
                      ..+.+.|++++|...|.+....-  |....           ..-.....-...       ....+|+-+-.+|.+.|+++
T Consensus        25 ~~~f~~~~y~~A~~~Y~~al~~~--~~~~~-----------~~~~~~~~~~~~-------~~~~~~~Nla~~~~~l~~~~   84 (153)
T d2fbna1          25 NEFFKKNEINEAIVKYKEALDFF--IHTEE-----------WDDQILLDKKKN-------IEISCNLNLATCYNKNKDYP   84 (153)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTT--TTCTT-----------CCCHHHHHHHHH-------HHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhC--cchhh-----------hhhHHHHHhhhh-------HHHHHHhhHHHHHHHhcccc
Confidence            45678899999999988876531  11110           000001111111       12346777888889999999


Q ss_pred             HHHHHHHHHHhcCCCCChh-H-HHHHHHHHhcchHHHhh
Q 002846          475 RVYYLLHKLRTSVRKVSPS-T-ADVIAKWFNSKEAARLG  511 (874)
Q Consensus       475 ~A~~ll~~M~~~~~~~sp~-T-~~~I~~~~~s~~~~~a~  511 (874)
                      +|+..+.+....  .|.-. + +..-..+...+...+|.
T Consensus        85 ~Al~~~~~al~~--~p~~~ka~~~~g~~~~~lg~~~~A~  121 (153)
T d2fbna1          85 KAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAK  121 (153)
T ss_dssp             HHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             hhhhhhhccccc--cchhhhhhHHhHHHHHHcCCHHHHH
Confidence            999999998776  33322 3 34456666666555544

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=90.43  E-value=0.11  Score=52.11  Aligned_cols=115  Identities=14%  Similarity=0.097  Sum_probs=77.2

Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHH
Q 002846          363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKAC  442 (874)
Q Consensus       363 ~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~  442 (874)
                      .+.|++++|+..|++-.+.. +-|...+..|...+|..|++++|...|+...+.  .|+....-..+....      .+.
T Consensus         7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll------~a~   77 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLV------KAA   77 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHH------HHH
T ss_pred             HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHH------Hhc
Confidence            36799999999999988874 557899999999999999999999999998765  465332222222111      122


Q ss_pred             HHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          443 SVEEHMLEH----GVY--P-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       443 ~l~~eM~~~----Gv~--P-d~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      ....++...    .+.  | +...+......+.+.|+.++|..++.+..+.
T Consensus        78 ~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~  128 (264)
T d1zbpa1          78 QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  128 (264)
T ss_dssp             HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            222333221    121  2 2233334445567889999999999888775

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.09  E-value=11  Score=38.21  Aligned_cols=58  Identities=9%  Similarity=0.041  Sum_probs=42.7

Q ss_pred             HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 002846          159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCS  237 (874)
Q Consensus       159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~  237 (874)
                      ...+.+..+.|..++..+               .-|..++..+.+.+++..|.+++....      +..+|--++.+|.
T Consensus        23 ~c~~~~lye~A~~lY~~~---------------~d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~   80 (336)
T d1b89a_          23 RCYDEKMYDAAKLLYNNV---------------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACV   80 (336)
T ss_dssp             ------CTTTHHHHHHHT---------------TCHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHhC---------------CCHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHH
Confidence            444778888999999988               567888999999999999988876542      4568888888887

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.81  E-value=0.074  Score=54.41  Aligned_cols=215  Identities=7%  Similarity=-0.096  Sum_probs=110.8

Q ss_pred             cCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHhc
Q 002846          163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRG--DVMGAIRLYDKAQREGIKLGQYHYNVLLY-LCSSA  239 (874)
Q Consensus       163 ~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G--~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~-a~~~~  239 (874)
                      .+...+|+..|+......       +-+...|..+-.++...+  ++++|+..+.++.... +.+...+..++. .+-  
T Consensus        86 ~~~~~~al~~~~~~l~~~-------pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~--  155 (334)
T d1dcea1          86 AALVKAELGFLESCLRVN-------PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQ--  155 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHhC-------CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHH--
Confidence            344678888888875432       113356666655665554  5889999999988653 234555544443 333  


Q ss_pred             ccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCe
Q 002846          240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG  319 (874)
Q Consensus       240 ~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~  319 (874)
                              ..+..++|+..+.       ..... +..+...|+.+-..      +.+.|+.++|...+......  .|+.
T Consensus       156 --------~~~~~~~Al~~~~-------~~i~~-~p~~~~a~~~l~~~------~~~~~~~~~A~~~~~~~~~~--~~~~  211 (334)
T d1dcea1         156 --------AAVAPAEELAFTD-------SLITR-NFSNYSSWHYRSCL------LPQLHPQPDSGPQGRLPENV--LLKE  211 (334)
T ss_dssp             --------TCCCHHHHHHHHH-------TTTTT-TCCCHHHHHHHHHH------HHHHSCCCCSSSCCSSCHHH--HHHH
T ss_pred             --------hccccHHHHHHHH-------HHHHc-CCCCHHHHHHHHHH------HHHhcCHHHHHHHHHHhHHh--HHHH
Confidence                    5688889998885       33332 33355567666555      55666555443222111100  0000


Q ss_pred             eeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 002846          320 HMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS  399 (874)
Q Consensus       320 ~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~  399 (874)
                                                          ..+...+...+..+++...+....... +++...+..+...+..
T Consensus       212 ------------------------------------~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~  254 (334)
T d1dcea1         212 ------------------------------------LELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTV  254 (334)
T ss_dssp             ------------------------------------HHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHH
T ss_pred             ------------------------------------HHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHH
Confidence                                                111222333344444555554444332 2333344445555555


Q ss_pred             cCChhHHHHHHHHHHHCCCCC-CcccHHHHHHHHHhCCChhHHHHHHHHHHH
Q 002846          400 MGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLE  450 (874)
Q Consensus       400 ~G~~d~A~~l~~~M~~~Gi~P-d~~tYn~LI~a~~k~G~~~~A~~l~~eM~~  450 (874)
                      .|+.++|...+.+....  .| +...|..+-..|...|+.++|.+.++...+
T Consensus       255 ~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~  304 (334)
T d1dcea1         255 LQSELESCKELQELEPE--NKWCLLTIILLMRALDPLLYEKETLQYFSTLKA  304 (334)
T ss_dssp             HHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHhh--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            55666666555544332  12 233444444555556666666666666555

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.72  E-value=7  Score=39.79  Aligned_cols=213  Identities=8%  Similarity=-0.022  Sum_probs=108.4

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchh
Q 002846          189 SEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTE  268 (874)
Q Consensus       189 Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~e  268 (874)
                      ||.+--..+.+-|-+.|.++.|..+|..+.         -|.-++..+.          +.++...|.+++.       .
T Consensus        12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v----------~l~~~~~avd~~~-------k   65 (336)
T d1b89a_          12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLV----------HLGEYQAAVDGAR-------K   65 (336)
T ss_dssp             C----------------CTTTHHHHHHHTT---------CHHHHHHHHH----------TTTCHHHHHHHHH-------H
T ss_pred             CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHH----------hhccHHHHHHHHH-------H
Confidence            343444566677779999999999998764         3667777777          6778888888774       1


Q ss_pred             hhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccc
Q 002846          269 LGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWS  348 (874)
Q Consensus       269 m~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~  348 (874)
                      .      .+.-+|.-+...      +.+......|.     +...++           ..++..+               
T Consensus        66 ~------~~~~~~k~~~~~------l~~~~e~~la~-----i~~~~~-----------~~~~d~l---------------  102 (336)
T d1b89a_          66 A------NSTRTWKEVCFA------CVDGKEFRLAQ-----MCGLHI-----------VVHADEL---------------  102 (336)
T ss_dssp             H------TCHHHHHHHHHH------HHHTTCHHHHH-----HTTTTT-----------TTCHHHH---------------
T ss_pred             c------CCHHHHHHHHHH------HHhCcHHHHHH-----HHHHHh-----------hcCHHHH---------------
Confidence            1      122344444444      33333332221     111111           1111112               


Q ss_pred             cccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHH
Q 002846          349 IDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA  428 (874)
Q Consensus       349 i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~L  428 (874)
                             ..+|..|-..|..++...+++..... -..+...++-|+..|++.+ .++   +.+.++...   +.....-+
T Consensus       103 -------~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~~k---l~e~l~~~s---~~y~~~k~  167 (336)
T d1b89a_         103 -------EELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQK---MREHLELFW---SRVNIPKV  167 (336)
T ss_dssp             -------HHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-HHH---HHHHHHHHS---TTSCHHHH
T ss_pred             -------HHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-hHH---HHHHHHhcc---ccCCHHHH
Confidence                   56788888999999999999976533 2567888999999999864 333   444443321   12222334


Q ss_pred             HHHHHhCCChhHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 002846          429 LSVFCNNGDVDKACSVEEHMLEHG--------VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT  485 (874)
Q Consensus       429 I~a~~k~G~~~~A~~l~~eM~~~G--------v~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~  485 (874)
                      +..|-..+-+.++.-++..|....        -.++.......+..+.+.++.+...+++....+
T Consensus       168 ~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~  232 (336)
T d1b89a_         168 LRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLE  232 (336)
T ss_dssp             HHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH
T ss_pred             HHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcchhhhhHHHHHHHHHccCChHHHHHHHHHHHH
Confidence            444555555555554444432200        012222334455556666666666666555443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=87.65  E-value=3.8  Score=36.77  Aligned_cols=90  Identities=12%  Similarity=0.042  Sum_probs=49.6

Q ss_pred             HHHHhcCCHHHHHHHHHHHHH---CCCCCC-----------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccH
Q 002846          360 SEDAKKYAFQRGFEIYEKMCL---DEVPMN-----------EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY  425 (874)
Q Consensus       360 ~~~~k~g~~~~A~~lf~~M~~---~Gv~Pd-----------~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tY  425 (874)
                      ..+.+.|++.+|...|.+-..   ....++           ..+|+.+-.+|.+.|++++|+..++...... +.+...|
T Consensus        23 ~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~  101 (168)
T d1kt1a1          23 TVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGL  101 (168)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHH
Confidence            456778999999999976443   111111           1234444555555666666666665555431 2234444


Q ss_pred             HHHHHHHHhCCChhHHHHHHHHHHH
Q 002846          426 GPALSVFCNNGDVDKACSVEEHMLE  450 (874)
Q Consensus       426 n~LI~a~~k~G~~~~A~~l~~eM~~  450 (874)
                      ..+-.+|...|++++|...|+....
T Consensus       102 ~~~~~~~~~l~~~~~A~~~~~~al~  126 (168)
T d1kt1a1         102 YRRGEAQLLMNEFESAKGDFEKVLE  126 (168)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4455555555555555555555554

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.62  E-value=1.5  Score=39.59  Aligned_cols=91  Identities=12%  Similarity=0.060  Sum_probs=46.3

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCC--------------CC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcc
Q 002846          359 LSEDAKKYAFQRGFEIYEKMCLDE--------------VP-MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR  423 (874)
Q Consensus       359 I~~~~k~g~~~~A~~lf~~M~~~G--------------v~-Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~  423 (874)
                      -..+.+.|++++|++.|.+....-              +. .+...|..+-.++.+.|++++|+..+.+..+.. +-+..
T Consensus        34 ~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~  112 (169)
T d1ihga1          34 GNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTK  112 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhh
Confidence            345678899999999887764310              00 122234444444555555555555555544331 11233


Q ss_pred             cHHHHHHHHHhCCChhHHHHHHHHHHH
Q 002846          424 SYGPALSVFCNNGDVDKACSVEEHMLE  450 (874)
Q Consensus       424 tYn~LI~a~~k~G~~~~A~~l~~eM~~  450 (874)
                      .|..+-.+|.+.|++++|.+.|+...+
T Consensus       113 a~~~~g~~~~~l~~~~~A~~~~~~al~  139 (169)
T d1ihga1         113 ALYRRAQGWQGLKEYDQALADLKKAQE  139 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence            444444445555555555555554444

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=83.54  E-value=4.4  Score=35.77  Aligned_cols=97  Identities=13%  Similarity=0.115  Sum_probs=60.8

Q ss_pred             HHHHH--HHHHHhcCChhHHHHHHHHHHHCC-CCCC----------cccHHHHHHHHHhCCChhHHHHHHHHHHHc----
Q 002846          389 SLTAV--GRMAMSMGDGDMAFDMVKRMKSLG-INPR----------LRSYGPALSVFCNNGDVDKACSVEEHMLEH----  451 (874)
Q Consensus       389 tyn~L--I~~~~~~G~~d~A~~l~~~M~~~G-i~Pd----------~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~----  451 (874)
                      +|..+  ...+...|++++|+..|++-.... -.|+          ...|+.+-.+|.+.|++++|.+-+++....    
T Consensus         9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~   88 (156)
T d2hr2a1           9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   88 (156)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence            44444  334556677888877777765421 1122          235666777778888888888777776531    


Q ss_pred             -CCCCCH-----HHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 002846          452 -GVYPEE-----PELEALLRVSVEAGKGDRVYYLLHKLRT  485 (874)
Q Consensus       452 -Gv~Pd~-----~ty~~LI~~~~~~G~~d~A~~ll~~M~~  485 (874)
                       ...++.     ..|+.+-.+|...|++++|...|++..+
T Consensus        89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence             122222     2355566778888999999998887554

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=81.74  E-value=5.5  Score=35.53  Aligned_cols=94  Identities=14%  Similarity=0.015  Sum_probs=72.0

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHC--------------CCCC-CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 002846          392 AVGRMAMSMGDGDMAFDMVKRMKSL--------------GINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE  456 (874)
Q Consensus       392 ~LI~~~~~~G~~d~A~~l~~~M~~~--------------Gi~P-d~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd  456 (874)
                      ..-..+...|++++|.+.|.+..+.              .+.| +...|..+=..|.+.|++++|...+....+.. .-+
T Consensus        32 ~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~  110 (169)
T d1ihga1          32 NIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSN  110 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhh
Confidence            3455677889999998888766431              1112 23345556677888999999999999998754 246


Q ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846          457 EPELEALLRVSVEAGKGDRVYYLLHKLRTS  486 (874)
Q Consensus       457 ~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~  486 (874)
                      ...|..+-.++.+.|++++|...|.+..+.
T Consensus       111 ~~a~~~~g~~~~~l~~~~~A~~~~~~al~l  140 (169)
T d1ihga1         111 TKALYRRAQGWQGLKEYDQALADLKKAQEI  140 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence            678888999999999999999999999886