Citrus Sinensis ID: 002853
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 873 | 2.2.26 [Sep-21-2011] | |||||||
| O81643 | 909 | Villin-1 OS=Arabidopsis t | yes | no | 0.987 | 0.948 | 0.605 | 0.0 | |
| O65570 | 974 | Villin-4 OS=Arabidopsis t | no | no | 0.950 | 0.852 | 0.476 | 0.0 | |
| O81645 | 965 | Villin-3 OS=Arabidopsis t | no | no | 0.985 | 0.891 | 0.390 | 0.0 | |
| O81644 | 976 | Villin-2 OS=Arabidopsis t | no | no | 0.838 | 0.75 | 0.445 | 0.0 | |
| Q27319 | 754 | Gelsolin, cytoplasmic OS= | N/A | no | 0.794 | 0.920 | 0.307 | 4e-95 | |
| O75366 | 819 | Advillin OS=Homo sapiens | yes | no | 0.789 | 0.841 | 0.306 | 4e-92 | |
| P20305 | 772 | Gelsolin (Fragment) OS=Su | no | no | 0.762 | 0.862 | 0.295 | 1e-89 | |
| O93510 | 778 | Gelsolin OS=Gallus gallus | no | no | 0.767 | 0.861 | 0.296 | 1e-88 | |
| Q28372 | 731 | Gelsolin OS=Equus caballu | no | no | 0.769 | 0.919 | 0.294 | 2e-88 | |
| Q3SX14 | 731 | Gelsolin OS=Bos taurus GN | no | no | 0.762 | 0.911 | 0.293 | 2e-88 |
| >sp|O81643|VILI1_ARATH Villin-1 OS=Arabidopsis thaliana GN=VLN1 PE=2 SV=2 | Back alignment and function desciption |
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Score = 1075 bits (2781), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 530/876 (60%), Positives = 666/876 (76%), Gaps = 14/876 (1%)
Query: 1 MSLHSKDIDSAFEGAGKKLGLEIWCIENLQLVSVPKSSHGKFYTGSAYVILNTALLKSGP 60
MS SKDIDSAF+G G K GLEIWC+ N QL+S+PKSS GKF++G+AY++L T L K
Sbjct: 1 MSRLSKDIDSAFQGVGTKSGLEIWCVYNKQLISIPKSSFGKFHSGNAYLVLRTFLRKIES 60
Query: 61 PQHDIHYWLGNDVNEEDSTLVSDKALELDAALGSCTVQYREVQGQETEKFLSYFRPCIIP 120
PQ+DIHYWLG D NE DS L SDKAL+LDAALG CTVQYREVQGQETEKFLSYF+PCIIP
Sbjct: 61 PQYDIHYWLGIDANEVDSILASDKALDLDAALGCCTVQYREVQGQETEKFLSYFKPCIIP 120
Query: 121 LDGKYSLRSGKSNGETYKISMLTCKGDHVVRVKEVPFSRSSLNHNDVFIVDTASKIFLFS 180
++GKYS ++G + GETY++++L CKGDHVVRVKEVPF RSSLNH+DVFI+DTASK+FLF+
Sbjct: 121 VEGKYSPKTGIA-GETYQVTLLRCKGDHVVRVKEVPFLRSSLNHDDVFILDTASKVFLFA 179
Query: 181 GCNSSIQERAKALEVVQYIKEDKHGGKCGVATVEDGKFVGDSDVGEFWSLFGGYAPIPRD 240
GCNSS QE+AKA+EVV+YIK++KH G+C VAT+EDGKF GDSD GEFWS FGGYAPIP+
Sbjct: 180 GCNSSTQEKAKAMEVVEYIKDNKHDGRCEVATIEDGKFSGDSDAGEFWSFFGGYAPIPKL 239
Query: 241 SPSAFQQQPDTPSTTFFWINLQGKLCQIAANSLNKDMLEKDKCYMLDCVNEVFVWTGRNT 300
S S Q+Q TP FWI+ +G L +SL+KDMLEK+KCYMLDC +EVFVW GRNT
Sbjct: 240 SSSTTQEQTQTPCAELFWIDTKGNLHPTGTSSLDKDMLEKNKCYMLDCHSEVFVWMGRNT 299
Query: 301 SITERRISISASEDFLRNQGRTTGTHLTFLTEGLETTVFRSYFDSWPQIAEPKLYDEGRE 360
S+TER+ SIS+SE+FLR +GR+T T L LTEGLE FRS+F+ WPQ E LY+EGRE
Sbjct: 300 SLTERKTSISSSEEFLRKEGRSTTTSLVLLTEGLENARFRSFFNKWPQTVESSLYNEGRE 359
Query: 361 KVAAIFKQQGHDVKELPEEDFEP-YVNCRGILKVWRVNGDELSLLPAAEQMKLFSGDCYI 419
KVAA+FKQ+G+DV+ELP+E+ +P Y NCR LKVWRV+GD++SLL +Q KLF+GDCY+
Sbjct: 360 KVAALFKQKGYDVEELPDEEDDPLYTNCRDNLKVWRVDGDDVSLLSIPDQTKLFTGDCYL 419
Query: 420 VKYTYPGNGRDENVIYAWFGHESMTEDRAAAISHMSAIVDSTRGEAVMAQVHQDMEPVQF 479
V+Y Y R E+++Y W G ES+ +DRA AI++ SAIV +T+GE+V+ ++Q EP +F
Sbjct: 420 VQYKYTYKERTEHLLYVWIGCESIQQDRADAITNASAIVGTTKGESVLCHIYQGNEPSRF 479
Query: 480 FLIFQSLIVFKGGLSTQYKKFIVEEGIVDETYDEKKMALFCIQGTSPCNMQAFQVDRVST 539
F +FQSL+VFKGGLS +YK + E+ + E Y+E K +LF + GTSP NMQA QV+ V+T
Sbjct: 480 FPMFQSLVVFKGGLSRRYKVLLAEKEKIGEEYNENKASLFRVVGTSPRNMQAIQVNLVAT 539
Query: 540 CLNSSYCYILQNGASVFTWIGNLSSSRDHDLLDRMVELINPTWQPISVREGSEPEVFWNA 599
LNSSY YILQ GAS FTWIG LSS DH++LDRM+ ++ + QPI +REG+E + FWN
Sbjct: 540 SLNSSYSYILQYGASAFTWIGKLSSDSDHEVLDRMLYFLDTSCQPIYIREGNETDTFWNL 599
Query: 600 LGGKSEYPREKEIKGFIEDPHLFTCTLTEGDLKVKEIYNFTQDDLTTEDILVLDCCREIY 659
LGGKSEYP+EKE++ IE+PHLFTC+ + LKVKEIYNF QDDLTTED+ +LDC E+Y
Sbjct: 600 LGGKSEYPKEKEMRKQIEEPHLFTCSCSSDVLKVKEIYNFVQDDLTTEDVFLLDCQSEVY 659
Query: 660 VWIGCHSDLNSKQQALNIGQKFLETDILVEGLSLETPIYVVTEGHEPPFFTCFFAWDPLK 719
VWIG +S++ SK++AL +G KFLE DIL EGL++ TP+YVVTEGHEPPFFT FF W P K
Sbjct: 660 VWIGSNSNIKSKEEALTLGLKFLEMDILEEGLTMRTPVYVVTEGHEPPFFTRFFEWVPEK 719
Query: 720 AKMHGNSFERKLAILKGRPSIEASVRNSWKPYFGETTPDS---LRSRSVSSNGLQGSGSP 776
A MHGNSFERKLA LKG+ + ++ R+S Y ++ ++ L+SRSVSSNG + SP
Sbjct: 720 ANMHGNSFERKLASLKGKKT--STKRSSGSQYRSQSKDNASRDLQSRSVSSNGSERGVSP 777
Query: 777 IPSISSSKLNSA-DRHRAFCETPTAQLLFSESTL--DKDSLTGEPSSS----SKSTKAIQ 829
S L+SA D + TP + LFSES L D + + SSS SK +
Sbjct: 778 CSSEKLLSLSSAEDMTNSSNSTPVVKKLFSESLLVDPNDGVARQESSSKSDISKQKPRVG 837
Query: 830 FNESEAGVSSLIYSYEQLRVDSRNPVIGIDVTKREV 865
N + + SL YSYEQLRVDS+ PV ID T+RE
Sbjct: 838 INSDLSSLESLAYSYEQLRVDSQKPVTDIDATRREA 873
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Ca(2+)-regulated actin-binding protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|O65570|VILI4_ARATH Villin-4 OS=Arabidopsis thaliana GN=VLN4 PE=1 SV=1 | Back alignment and function description |
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| >sp|O81645|VILI3_ARATH Villin-3 OS=Arabidopsis thaliana GN=VLN3 PE=1 SV=2 | Back alignment and function description |
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| >sp|O81644|VILI2_ARATH Villin-2 OS=Arabidopsis thaliana GN=VLN2 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q27319|GELS_HOMAM Gelsolin, cytoplasmic OS=Homarus americanus PE=1 SV=1 | Back alignment and function description |
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| >sp|O75366|AVIL_HUMAN Advillin OS=Homo sapiens GN=AVIL PE=1 SV=3 | Back alignment and function description |
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| >sp|P20305|GELS_PIG Gelsolin (Fragment) OS=Sus scrofa GN=GSN PE=1 SV=1 | Back alignment and function description |
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| >sp|O93510|GELS_CHICK Gelsolin OS=Gallus gallus GN=GSN PE=2 SV=1 | Back alignment and function description |
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| >sp|Q28372|GELS_HORSE Gelsolin OS=Equus caballus GN=GSN PE=1 SV=2 | Back alignment and function description |
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| >sp|Q3SX14|GELS_BOVIN Gelsolin OS=Bos taurus GN=GSN PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 873 | ||||||
| 297745909 | 908 | unnamed protein product [Vitis vinifera] | 0.983 | 0.946 | 0.700 | 0.0 | |
| 359478551 | 902 | PREDICTED: villin-1-like [Vitis vinifera | 0.983 | 0.952 | 0.704 | 0.0 | |
| 224106269 | 902 | predicted protein [Populus trichocarpa] | 0.982 | 0.951 | 0.682 | 0.0 | |
| 255569327 | 903 | villin 1-4, putative [Ricinus communis] | 0.987 | 0.954 | 0.672 | 0.0 | |
| 356569564 | 972 | PREDICTED: villin-1-like [Glycine max] | 0.965 | 0.867 | 0.659 | 0.0 | |
| 356527236 | 905 | PREDICTED: villin-1-like isoform 2 [Glyc | 0.987 | 0.952 | 0.639 | 0.0 | |
| 356527234 | 913 | PREDICTED: villin-1-like isoform 1 [Glyc | 0.987 | 0.944 | 0.632 | 0.0 | |
| 449450930 | 904 | PREDICTED: villin-1-like [Cucumis sativu | 0.983 | 0.950 | 0.635 | 0.0 | |
| 145323093 | 911 | villin-1 [Arabidopsis thaliana] gi|33025 | 0.987 | 0.946 | 0.604 | 0.0 | |
| 18402176 | 909 | villin-1 [Arabidopsis thaliana] gi|14774 | 0.987 | 0.948 | 0.605 | 0.0 |
| >gi|297745909|emb|CBI15965.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 1264 bits (3270), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 610/871 (70%), Positives = 709/871 (81%), Gaps = 12/871 (1%)
Query: 7 DIDSAFEGAGKKLGLEIWCIENLQLVSVPKSSHGKFYTGSAYVILNTALLKSGPPQHDIH 66
+ID F+GAG K GLEIWCIENL+LV VPKSS+GKF++GSAY+ILNT LLKS PQHDIH
Sbjct: 2 EIDPIFQGAGVKAGLEIWCIENLRLVLVPKSSYGKFFSGSAYIILNTVLLKSSSPQHDIH 61
Query: 67 YWLGNDVNEEDSTLVSDKALELDAALGSCTVQYREVQGQETEKFLSYFRPCIIPLDGKYS 126
YWLGND E DS L SDKALELDAALGS VQ+RE+QG ETEKFLSYF+PCIIP++G +S
Sbjct: 62 YWLGNDAKEVDSALASDKALELDAALGSQAVQFREIQGLETEKFLSYFKPCIIPIEGVFS 121
Query: 127 LRSGKSNGETYKISMLTCKGDHVVRVKEVPFSRSSLNHNDVFIVDTASKIFLFSGCNSSI 186
G+ N ETY+IS+ TCKGDHVV +KEVPFSRSSLNHNDVFI+DTASKIFLFSGCNSSI
Sbjct: 122 SGPGELNCETYQISLFTCKGDHVVHIKEVPFSRSSLNHNDVFILDTASKIFLFSGCNSSI 181
Query: 187 QERAKALEVVQYIKEDKHGGKCGVATVEDGKFVGDSDVGEFWSLFGGYAPIPRDSPSAFQ 246
QERAKALEVVQYIKE+KH GKC VAT+EDGKFVGD DVGEFW LFGGYAPIPRD P + Q
Sbjct: 182 QERAKALEVVQYIKENKHNGKCEVATIEDGKFVGDPDVGEFWGLFGGYAPIPRDIPPSLQ 241
Query: 247 QQPDTPSTTFFWINLQGKLCQIAANSLNKDMLEKDKCYMLDCVNEVFVWTGRNTSITERR 306
+QPD P+ FWI QGKLCQ N LNK+MLE +KCYMLDC NE+FVW GRNTSITER+
Sbjct: 242 KQPDIPNAKLFWIATQGKLCQTVCNMLNKEMLESNKCYMLDCDNEIFVWMGRNTSITERK 301
Query: 307 ISISASEDFLRNQGRTTGTHLTFLTEGLETTVFRSYFDSWPQIAEPKLYDEGREKVAAIF 366
SISA+EDFL++QGR+T +HLT LTEG ET +FRSYFD WPQ+AEP+LY+EGR KVAA+F
Sbjct: 302 TSISAAEDFLKSQGRSTRSHLTSLTEGSETAIFRSYFDVWPQLAEPRLYEEGRGKVAAMF 361
Query: 367 KQQGHDVKELPEEDFEPYVNCRGILKVWRVNGDELSLLPAAEQMKLFSGDCYIVKYTYPG 426
KQQG+DVKELPEED + ++C G LKVWRVN DEL L+P AEQ KLFSGDCYIV+Y YPG
Sbjct: 362 KQQGYDVKELPEEDCDSLIDCSGTLKVWRVNDDELFLVPVAEQTKLFSGDCYIVQYKYPG 421
Query: 427 NGRDENVIYAWFGHESMTEDRAAAISHMSAIVDSTRGEAVMAQVHQDMEPVQFFLIFQSL 486
NGRDE + YAW G ++ EDR AIS M+ IVDS +G++V+ QV ++ EP++FFLIFQ+L
Sbjct: 422 NGRDEYLFYAWLGRGAVMEDRVDAISRMNTIVDSMKGDSVVGQVIEEKEPIEFFLIFQTL 481
Query: 487 IVFKGGLSTQYKKFIVEEGIVDETYDEKKMALFCIQGTSPCNMQAFQVDRVSTCLNSSYC 546
IVFKGGLST+YK+FI E+GI DETYDEKK ALF +QGTSP NMQA QVD+VS+ LNSSYC
Sbjct: 482 IVFKGGLSTRYKRFIAEKGIADETYDEKKTALFRVQGTSPNNMQAIQVDQVSSSLNSSYC 541
Query: 547 YILQNGASVFTWIGNLSSSRDHDLLDRMVELINPTWQPISVREGSEPEVFWNALGGKSEY 606
+ILQ S+FTW+GNLSS+RDHDLLDRM++LINPT QPISVREGSEP+VFW ALGGK+E+
Sbjct: 542 FILQTETSIFTWVGNLSSTRDHDLLDRMLDLINPTLQPISVREGSEPDVFWKALGGKAEH 601
Query: 607 PREKEIKGFIEDPHLFTCTLTEGDLKVKEIYNFTQDDLTTEDILVLDCCREIYVWIGCHS 666
PRE+EIK ++EDPHLFTCT T+GDLKVKEI+NFTQDDLTTED L+LDC REIYVW GCHS
Sbjct: 602 PREREIKAYVEDPHLFTCTFTDGDLKVKEIFNFTQDDLTTEDKLILDCNREIYVWCGCHS 661
Query: 667 DLNSKQQALNIGQKFLETDILVEGLSLETPIYVVTEGHEPPFFTCFFAWDPLKAKMHGNS 726
++ SK+QAL IG KFLE DILVEGLSLETPIYVVTEGHEP FFT FF WD KA MHG+S
Sbjct: 662 NVRSKKQALEIGLKFLEIDILVEGLSLETPIYVVTEGHEPTFFTRFFEWDSSKANMHGSS 721
Query: 727 FERKLAILKGRP-SIEASVRNSWKPYFGETTPDSLRSRSVSSNGLQGSGSPIPSISSSKL 785
FER+LAILKG IE +RNSWK E TPDSLRSRSVSSNGL+ S S S+S S L
Sbjct: 722 FERRLAILKGTAQKIEVPLRNSWKACSTENTPDSLRSRSVSSNGLRRSASSAFSVSGSNL 781
Query: 786 NSADRHRAFCETPTAQLLFSESTLDKDSLTGE----------PSSSSKSTKAIQFNESEA 835
S+D H+ +P A+ LFS S D DS G PSS S++ Q + +
Sbjct: 782 KSSDNHQISSVSPIARSLFSGSYPDHDSADGSPVPPRPTAVVPSSPSENVGLDQIDGVKI 841
Query: 836 GVSSLIYSYEQLRVDSRNPV-IGIDVTKREV 865
V+ LI+ YE+L+V + +PV GIDVTKRE
Sbjct: 842 DVNLLIFPYERLKVVADDPVTTGIDVTKREA 872
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359478551|ref|XP_002279254.2| PREDICTED: villin-1-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224106269|ref|XP_002314108.1| predicted protein [Populus trichocarpa] gi|222850516|gb|EEE88063.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|255569327|ref|XP_002525631.1| villin 1-4, putative [Ricinus communis] gi|223535067|gb|EEF36749.1| villin 1-4, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|356569564|ref|XP_003552969.1| PREDICTED: villin-1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356527236|ref|XP_003532218.1| PREDICTED: villin-1-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356527234|ref|XP_003532217.1| PREDICTED: villin-1-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
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| >gi|449450930|ref|XP_004143215.1| PREDICTED: villin-1-like [Cucumis sativus] gi|449526423|ref|XP_004170213.1| PREDICTED: villin-1-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|145323093|ref|NP_001031444.2| villin-1 [Arabidopsis thaliana] gi|330253222|gb|AEC08316.1| villin-1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|18402176|ref|NP_029567.1| villin-1 [Arabidopsis thaliana] gi|147744599|sp|O81643.2|VILI1_ARATH RecName: Full=Villin-1 gi|20198093|gb|AAD23629.2| putative villin [Arabidopsis thaliana] gi|330253221|gb|AEC08315.1| villin-1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 873 | ||||||
| TAIR|locus:2165570 | 962 | VLN5 "villin 5" [Arabidopsis t | 0.871 | 0.791 | 0.503 | 9e-215 | |
| TAIR|locus:2054401 | 976 | VLN2 "villin 2" [Arabidopsis t | 0.838 | 0.75 | 0.445 | 1.5e-179 | |
| TAIR|locus:2082523 | 965 | VLN3 "villin 3" [Arabidopsis t | 0.840 | 0.760 | 0.443 | 1.9e-179 | |
| UNIPROTKB|F1MMN9 | 816 | AVIL "Uncharacterized protein" | 0.798 | 0.854 | 0.322 | 6.1e-95 | |
| UNIPROTKB|F1PBL8 | 816 | AVIL "Uncharacterized protein" | 0.820 | 0.877 | 0.314 | 2.4e-92 | |
| UNIPROTKB|I3LI80 | 819 | AVIL "Uncharacterized protein" | 0.799 | 0.852 | 0.312 | 2.1e-91 | |
| UNIPROTKB|E1C5U6 | 865 | VILL "Uncharacterized protein" | 0.797 | 0.804 | 0.307 | 1.7e-90 | |
| UNIPROTKB|O75366 | 819 | AVIL "Advillin" [Homo sapiens | 0.786 | 0.838 | 0.311 | 3.1e-90 | |
| ZFIN|ZDB-GENE-030131-8567 | 728 | gsnb "gelsolin b" [Danio rerio | 0.782 | 0.938 | 0.305 | 6.7e-88 | |
| MGI|MGI:1333798 | 819 | Avil "advillin" [Mus musculus | 0.799 | 0.852 | 0.304 | 1.1e-87 |
| TAIR|locus:2165570 VLN5 "villin 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2019 (715.8 bits), Expect = 9.0e-215, Sum P(2) = 9.0e-215
Identities = 392/778 (50%), Positives = 534/778 (68%)
Query: 1 MSLHSKDIDSAFEGAGKKLGLEIWCIENLQLVSVPKSSHGKFYTGSAYVILNTALLKSGP 60
M+ +D+D A +GAG+K G+EIW IEN + V+VP+ SHGKF+TG +Y++L T +SG
Sbjct: 1 MTFSMRDLDQALQGAGQKSGIEIWRIENFKPVTVPQESHGKFFTGDSYIVLKTTASRSGS 60
Query: 61 PQHDIHYWLGNDVNEEDSTLVSDKALELDAALGSCTVQYREVQGQETEKFLSYFRPCIIP 120
HDIHYWLG D +++++ V+ +ELD+ALG VQYREVQG ETEKFLSYF+PCIIP
Sbjct: 61 LHHDIHYWLGKDSSQDEAGAVAVMTVELDSALGGRAVQYREVQGHETEKFLSYFKPCIIP 120
Query: 121 LDGKYSLRSGKSNGETYKISMLTCKGDHVVRVKEVPFSRSSLNHNDVFIVDTASKIFLFS 180
+G + E ++ + CKG HVVRVKEVPF RS+LNH DVFI+DT SKIF FS
Sbjct: 121 QEGGVASGFNHVKPEEHQTRLYICKGKHVVRVKEVPFVRSTLNHEDVFILDTESKIFQFS 180
Query: 181 GCNSSIQERAKALEVVQYIKEDKHGGKCGVATVEDGKFVGDSDVGEFWSLFGGYAPIPRD 240
G SSIQERAKALEVVQYIK+ H GKC +A VEDG+ + D++ GEFW LFGG+AP+P+
Sbjct: 181 GSKSSIQERAKALEVVQYIKDTYHDGKCDIAAVEDGRMMADAEAGEFWGLFGGFAPLPKK 240
Query: 241 SPSAFQQQPDTPSTTFFWINLQGKLCQIAANSLNKDMLEKDKCYMLDCVNEVFVWTGRNT 300
+ + F + +G+ + A L K++L+ +KCY+LDC E+FVW GR+T
Sbjct: 241 PAVNDDETAASDGIKLFSVE-KGQTDAVEAECLTKELLDTNKCYILDCGLELFVWKGRST 299
Query: 301 SITERRISISASEDFLRNQGRTTGTHLTFLTEGLETTVFRSYFDSWPQ---IAEPKLYDE 357
SI +R+ + A+E+F R+ ++L + EG ET +FRS FDSWP IAEP+ +
Sbjct: 300 SIDQRKSATEAAEEFFRSS-EPPKSNLVSVMEGYETVMFRSKFDSWPASSTIAEPQ---Q 355
Query: 358 GREKVAAIFKQQGHDVKEL-------PEEDFEPYVNCRGILKVWRVNGDELSLLPAAEQM 410
GR KVAA+ ++QG +V+ L +++ +PY++ G L+VWR+N +E LL AAEQ
Sbjct: 356 GRGKVAALLQRQGVNVQGLVKTSSSSSKDEPKPYIDGTGNLQVWRINCEEKILLEAAEQS 415
Query: 411 KLFSGDCYIVKYTYPGNGRDENVIYAWFGHESMTEDRAAAISHMSAIVDSTRGEAVMAQV 470
K +SGDCYI++Y+YPG R+E+++ WFG +S+ EDRA+AIS + +V+S + A++
Sbjct: 416 KFYSGDCYILQYSYPGEDREEHLVGTWFGKQSVEEDRASAISLANKMVESMKFVPAQARI 475
Query: 471 HQDMEPVQFFLIFQSLIVFKGGLSTQYKKFIVEEGIVDETYDEKKMALFCIQGTSPCNMQ 530
++ EP+QFF+I QS I FKGG+S +KK+I E I D TY+ + +ALF +QG+ P NMQ
Sbjct: 476 NEGKEPIQFFVIMQSFITFKGGVSDAFKKYIAENDIPDTTYEAEGVALFRVQGSGPENMQ 535
Query: 531 AFQVDRVSTCLNSSYCYILQNGASVFTWIGNLSSSRDHDLLDRMVELINPTWQPISVREG 590
A Q++ S LNSS+CYIL ++VFTW GNL+SS D +L++RM++LI P + +EG
Sbjct: 536 AIQIEAASAGLNSSHCYILHGDSTVFTWCGNLTSSEDQELMERMLDLIKPNEPTKAQKEG 595
Query: 591 SEPEVFWNALGGKSEYPREKEIKGFIEDPHLFTCTLTEGDLKVKEIYNFTQDDLTTEDIL 650
SE E FW LGGKSEYP +K + DPHLF+CT T LK EI+NFTQDDL TEDI
Sbjct: 596 SESEQFWELLGGKSEYPSQKIKRDGESDPHLFSCTYTNESLKATEIFNFTQDDLMTEDIF 655
Query: 651 VLDCCREIYVWIGCHSDLNSKQQALNIGQKFLETDILVEGLSLETPIYVVTEGHEPPFFT 710
+LDC E++VW+G D K QAL+IG+ FL+ D L+E L+ ETPIY+VTEG+EPPFFT
Sbjct: 656 ILDCHTEVFVWVGQQVDPKKKPQALDIGENFLKHDFLLENLASETPIYIVTEGNEPPFFT 715
Query: 711 CFFAWDPLKAKMHGNSFERKLAIL--KGRPSIEASVRNSWKPYFGETTPDSLRSRSVS 766
FF WD K+ MHG+SF+RKLAIL KG+P ++ R T PD + RS S
Sbjct: 716 RFFTWDSSKSGMHGDSFQRKLAILTNKGKPLLDKPKRRVPAYSSRSTVPDKSQPRSRS 773
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| TAIR|locus:2054401 VLN2 "villin 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2082523 VLN3 "villin 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1MMN9 AVIL "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1PBL8 AVIL "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|I3LI80 AVIL "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1C5U6 VILL "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|O75366 AVIL "Advillin" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-030131-8567 gsnb "gelsolin b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:1333798 Avil "advillin" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O81643 | VILI1_ARATH | No assigned EC number | 0.6050 | 0.9873 | 0.9482 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
 |
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 |
 |
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 |
 | GSVIVG00024116001 | SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (898 aa) | ||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 873 | |||
| cd11290 | 113 | cd11290, gelsolin_S1_like, Gelsolin sub-domain 1-l | 4e-51 | |
| cd11293 | 101 | cd11293, gelsolin_S4_like, Gelsolin sub-domain 4-l | 2e-36 | |
| cd11291 | 99 | cd11291, gelsolin_S6_like, Gelsolin sub-domain 6-l | 1e-35 | |
| cd11288 | 92 | cd11288, gelsolin_S5_like, Gelsolin sub-domain 5-l | 2e-28 | |
| cd11289 | 92 | cd11289, gelsolin_S2_like, Gelsolin sub-domain 2-l | 5e-27 | |
| cd11292 | 98 | cd11292, gelsolin_S3_like, Gelsolin sub-domain 3-l | 5e-25 | |
| smart00262 | 90 | smart00262, GEL, Gelsolin homology domain | 4e-23 | |
| cd11293 | 101 | cd11293, gelsolin_S4_like, Gelsolin sub-domain 4-l | 9e-17 | |
| cd11292 | 98 | cd11292, gelsolin_S3_like, Gelsolin sub-domain 3-l | 7e-16 | |
| smart00262 | 90 | smart00262, GEL, Gelsolin homology domain | 2e-14 | |
| smart00262 | 90 | smart00262, GEL, Gelsolin homology domain | 9e-14 | |
| smart00262 | 90 | smart00262, GEL, Gelsolin homology domain | 1e-13 | |
| pfam00626 | 76 | pfam00626, Gelsolin, Gelsolin repeat | 1e-10 | |
| smart00262 | 90 | smart00262, GEL, Gelsolin homology domain | 6e-10 | |
| smart00262 | 90 | smart00262, GEL, Gelsolin homology domain | 1e-09 | |
| cd11288 | 92 | cd11288, gelsolin_S5_like, Gelsolin sub-domain 5-l | 2e-09 | |
| cd11292 | 98 | cd11292, gelsolin_S3_like, Gelsolin sub-domain 3-l | 8e-09 | |
| cd11290 | 113 | cd11290, gelsolin_S1_like, Gelsolin sub-domain 1-l | 1e-08 | |
| pfam00626 | 76 | pfam00626, Gelsolin, Gelsolin repeat | 4e-08 | |
| pfam00626 | 76 | pfam00626, Gelsolin, Gelsolin repeat | 3e-07 | |
| cd11280 | 88 | cd11280, gelsolin_like, Tandemly repeated domains | 5e-07 | |
| cd11280 | 88 | cd11280, gelsolin_like, Tandemly repeated domains | 9e-07 | |
| cd11291 | 99 | cd11291, gelsolin_S6_like, Gelsolin sub-domain 6-l | 1e-06 | |
| cd11291 | 99 | cd11291, gelsolin_S6_like, Gelsolin sub-domain 6-l | 1e-06 | |
| cd11292 | 98 | cd11292, gelsolin_S3_like, Gelsolin sub-domain 3-l | 2e-05 | |
| cd11280 | 88 | cd11280, gelsolin_like, Tandemly repeated domains | 5e-05 | |
| cd11280 | 88 | cd11280, gelsolin_like, Tandemly repeated domains | 0.004 |
| >gnl|CDD|200446 cd11290, gelsolin_S1_like, Gelsolin sub-domain 1-like domain found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
Score = 174 bits (443), Expect = 4e-51
Identities = 59/112 (52%), Positives = 82/112 (73%)
Query: 12 FEGAGKKLGLEIWCIENLQLVSVPKSSHGKFYTGSAYVILNTALLKSGPPQHDIHYWLGN 71
FEG G+K GL+IW IEN +LV VP+S +GKFY G +Y++L T L SG +DIHYWLG
Sbjct: 1 FEGVGQKPGLQIWRIENFELVPVPESFYGKFYEGDSYIVLKTTLDPSGSLSYDIHYWLGK 60
Query: 72 DVNEEDSTLVSDKALELDAALGSCTVQYREVQGQETEKFLSYFRPCIIPLDG 123
+ +++++ + KA+ELD LG VQ+REVQG E+E+FLSYF+ II ++G
Sbjct: 61 EASQDEAGAAAIKAVELDDYLGGRPVQHREVQGHESEEFLSYFKKGIIYIEG 112
|
Gelsolin repeats occur in gelsolin, severin, villin, advillin, villidin, supervillin, flightless, quail, fragmin, and other proteins, usually in several copies. They co-occur with villin headpiece domains, leucine-rich repeats, and several other domains. These gelsolin-related actin binding proteins (GRABPs) play regulatory roles in the assembly and disassembly of actin filaments; they are involved in F-actin capping, uncapping, severing, or the nucleation of actin filaments. Severing of actin filaments is Ca2+ dependent. Villins are also linked to generating bundles of F-actin with uniform filament polarity, which is most likely mediated by their extra villin headpiece domain. Many family members have also adopted functions in the nucleus, including the regulation of transcription. Supervillin, gelsolin, and flightless I are involved in intracellular signaling via nuclear hormone receptors. The gelsolin_like domain is distantly related to the actin depolymerizing domains found in cofilin and similar proteins. Length = 113 |
| >gnl|CDD|200449 cd11293, gelsolin_S4_like, Gelsolin sub-domain 4-like domain found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|200447 cd11291, gelsolin_S6_like, Gelsolin sub-domain 6-like domain found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|200444 cd11288, gelsolin_S5_like, Gelsolin sub-domain 5-like domain found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|200445 cd11289, gelsolin_S2_like, Gelsolin sub-domain 2-like domain found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|200448 cd11292, gelsolin_S3_like, Gelsolin sub-domain 3-like domain found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|214590 smart00262, GEL, Gelsolin homology domain | Back alignment and domain information |
|---|
| >gnl|CDD|200449 cd11293, gelsolin_S4_like, Gelsolin sub-domain 4-like domain found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|200448 cd11292, gelsolin_S3_like, Gelsolin sub-domain 3-like domain found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|214590 smart00262, GEL, Gelsolin homology domain | Back alignment and domain information |
|---|
| >gnl|CDD|214590 smart00262, GEL, Gelsolin homology domain | Back alignment and domain information |
|---|
| >gnl|CDD|214590 smart00262, GEL, Gelsolin homology domain | Back alignment and domain information |
|---|
| >gnl|CDD|201354 pfam00626, Gelsolin, Gelsolin repeat | Back alignment and domain information |
|---|
| >gnl|CDD|214590 smart00262, GEL, Gelsolin homology domain | Back alignment and domain information |
|---|
| >gnl|CDD|214590 smart00262, GEL, Gelsolin homology domain | Back alignment and domain information |
|---|
| >gnl|CDD|200444 cd11288, gelsolin_S5_like, Gelsolin sub-domain 5-like domain found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|200448 cd11292, gelsolin_S3_like, Gelsolin sub-domain 3-like domain found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|200446 cd11290, gelsolin_S1_like, Gelsolin sub-domain 1-like domain found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|201354 pfam00626, Gelsolin, Gelsolin repeat | Back alignment and domain information |
|---|
| >gnl|CDD|201354 pfam00626, Gelsolin, Gelsolin repeat | Back alignment and domain information |
|---|
| >gnl|CDD|200436 cd11280, gelsolin_like, Tandemly repeated domains found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|200436 cd11280, gelsolin_like, Tandemly repeated domains found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|200447 cd11291, gelsolin_S6_like, Gelsolin sub-domain 6-like domain found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|200447 cd11291, gelsolin_S6_like, Gelsolin sub-domain 6-like domain found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|200448 cd11292, gelsolin_S3_like, Gelsolin sub-domain 3-like domain found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|200436 cd11280, gelsolin_like, Tandemly repeated domains found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|200436 cd11280, gelsolin_like, Tandemly repeated domains found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 873 | |||
| KOG0443 | 827 | consensus Actin regulatory proteins (gelsolin/vill | 100.0 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 100.0 | |
| KOG0445 | 919 | consensus Actin regulatory protein supervillin (ge | 100.0 | |
| KOG0443 | 827 | consensus Actin regulatory proteins (gelsolin/vill | 100.0 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 100.0 | |
| KOG0445 | 919 | consensus Actin regulatory protein supervillin (ge | 100.0 | |
| smart00262 | 90 | GEL Gelsolin homology domain. Gelsolin/severin/vil | 99.68 | |
| smart00262 | 90 | GEL Gelsolin homology domain. Gelsolin/severin/vil | 99.65 | |
| PF00626 | 76 | Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gel | 99.38 | |
| PF00626 | 76 | Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gel | 99.34 | |
| PTZ00395 | 1560 | Sec24-related protein; Provisional | 94.81 | |
| PTZ00395 | 1560 | Sec24-related protein; Provisional | 94.28 | |
| KOG1984 | 1007 | consensus Vesicle coat complex COPII, subunit SFB3 | 94.2 | |
| COG5028 | 861 | Vesicle coat complex COPII, subunit SEC24/subunit | 94.19 | |
| COG5028 | 861 | Vesicle coat complex COPII, subunit SEC24/subunit | 92.84 | |
| KOG1984 | 1007 | consensus Vesicle coat complex COPII, subunit SFB3 | 91.56 | |
| KOG1985 | 887 | consensus Vesicle coat complex COPII, subunit SEC2 | 89.64 | |
| PLN00162 | 761 | transport protein sec23; Provisional | 80.05 |
| >KOG0443 consensus Actin regulatory proteins (gelsolin/villin family) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-202 Score=1708.43 Aligned_cols=781 Identities=47% Similarity=0.821 Sum_probs=719.6
Q ss_pred CCCCcccCCcccccCCccccEEEEEEECCeEeecCCCCCCccccCCeEEEEeeeecCCCCCceEEEEEccCCcCchhhhH
Q 002853 1 MSLHSKDIDSAFEGAGKKLGLEIWCIENLQLVSVPKSSHGKFYTGSAYVILNTALLKSGPPQHDIHYWLGNDVNEEDSTL 80 (873)
Q Consensus 1 ~~~~~~~~d~~~~g~G~~~gl~iWrIe~~~~~~vp~~~~G~Fy~gdsYIVl~t~~~~~g~~~~~i~~W~G~~ss~de~g~ 80 (873)
|+++|.++|++|+|+|++|||+|||||+|+++|||++.||+||+|||||||+|+..+++.+.|+||||||+++|+||+|+
T Consensus 1 ~s~~~~~ld~af~~ag~~pGl~IWRIe~f~lv~VP~s~~G~Fy~GdaYIvL~t~~~k~~~l~~DIHyWLGkd~S~dE~g~ 80 (827)
T KOG0443|consen 1 MSMSMLDLDPAFQGAGQKPGLEIWRIENFELVPVPKSSHGKFYTGDAYIVLKTTLKKNGSLSYDIHYWLGKDSSQDEAGA 80 (827)
T ss_pred CCccccccCHHHHhcccCCceEEEEeccCeeeecchhccCceecCceEEEEehhhccCCccceeEEEEecCccchhhhcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCceEEEeeccCCcHHHHhhhCCcEEEecCCccCCCCCCCCCccceEEEEeeCcceEEEEEecCCCC
Q 002853 81 VSDKALELDAALGSCTVQYREVQGQETEKFLSYFRPCIIPLDGKYSLRSGKSNGETYKISMLTCKGDHVVRVKEVPFSRS 160 (873)
Q Consensus 81 AA~~aveLd~~lgg~~vq~Re~QG~Es~~Fl~~Fk~~ii~~~Gg~~sgf~~~~~~~~~~rL~~vkG~~~v~~~eV~~s~s 160 (873)
||++|||||+.|||++||||||||+||+.||+|||+||||.+||++|||+||+.+.+.+|||||||+|++|++|||++|+
T Consensus 81 aAiktveLD~~Lgg~~vQhREVQg~ES~~FLsYFK~gi~~~~GGv~Sg~khv~~~~~~~rL~~~KGkr~vr~~eV~~~~s 160 (827)
T KOG0443|consen 81 AAIKTVELDDYLGGRAVQHREVQGHESEKFLSYFKPGIIYQEGGVASGFKHVETEEYQVRLFHCKGKRNVRVKEVPFSWS 160 (827)
T ss_pred eeeeeEehhhhhCCCcceeehhcccchHHHHhhccCCceecccccccCcccccccceeeEEEEEccceeEEEEEEEeehh
Confidence 99999999999999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred CccCCCceeeeCCCeEEEEeCCCCCHHHHHHHHHHHHHhhccCCCCceeEEEEcCCccCCCCChhhHHHHcCCCCC-CCC
Q 002853 161 SLNHNDVFIVDTASKIFLFSGCNSSIQERAKALEVVQYIKEDKHGGKCGVATVEDGKFVGDSDVGEFWSLFGGYAP-IPR 239 (873)
Q Consensus 161 SLns~DvFILd~~~~iyvW~G~~S~~~Er~kA~~va~~ik~~~~~g~~~v~~veeG~~~~~~E~~eFw~~lGg~~~-~~~ 239 (873)
|||++||||||++++||+|+|++||++||+||+++|+.|++.+|.|+|+|.+||+|+++.++|..+||..+||.++ ++.
T Consensus 161 S~N~gDvFILD~g~~i~qw~G~~Ss~~ER~KAl~~~~~IrD~e~~Gr~~V~vvdd~~~~~d~d~~~~~~~~~g~~~~~~~ 240 (827)
T KOG0443|consen 161 SLNHGDVFILDTGSKIYQWNGPNSSIQERAKALEVVQYIRDNERDGRCEVAVVDDGKEAADSDLGEFWGFVLGFAPALPK 240 (827)
T ss_pred hcCCCcEEEEEcCCceEEEcCCcccHHHHHHHHHHHHHhhccCCCCceeEEEecCcccccCchHHHHHHhhcCcCccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999889999999999999988 666
Q ss_pred CCCCCCCCCCCCCceeEEEEc-CCCCEEE--EecCCCccccCCCCceEEeeCC-CeEEEEecCCCCHHHHHHHHHHHHHH
Q 002853 240 DSPSAFQQQPDTPSTTFFWIN-LQGKLCQ--IAANSLNKDMLEKDKCYMLDCV-NEVFVWTGRNTSITERRISISASEDF 315 (873)
Q Consensus 240 ~~~~~~~~~~~~~~~rLy~v~-~~G~l~~--~e~~~~~q~~L~~~~vyILD~g-~eIyVWiG~~as~~erk~Al~~A~~y 315 (873)
+...+++.......++||||+ ++|.+.. +...||+|+||++++||||||| .+||||+|++|+.+||+.||..|++|
T Consensus 241 ~~~~~~~~~~~s~~~kLYkVsd~~g~l~v~~va~~~l~qdlLd~~dCYILD~g~~~IfVW~Gr~as~~ERkaAm~~AeeF 320 (827)
T KOG0443|consen 241 KSPDDDDEQANSAAAKLYKVSDASGGLKVPVVADGPLTKDLLDTEDCYILDCGGGEIFVWKGRQASLDERKAAMSSAEEF 320 (827)
T ss_pred CCcchhhhhhhccccEEEEEeccCCCccccccccchhhHHhhccCCeEEEecCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 666555556667789999995 4676543 3335699999999999999999 99999999999999999999999999
Q ss_pred HHhcCCCCCceEEEecCCccchhhhhhcccCCCCCCCcccccchhHHHhhhhhcCCCCCCC---Ccc--CCCCccccCCc
Q 002853 316 LRNQGRTTGTHLTFLTEGLETTVFRSYFDSWPQIAEPKLYDEGREKVAAIFKQQGHDVKEL---PEE--DFEPYVNCRGI 390 (873)
Q Consensus 316 ~~~~~R~p~t~i~~V~eG~Ep~~Fk~~F~~W~~~~~~~~~~~~~~kva~~~~~~~~dv~~l---p~~--e~~~~~d~~g~ 390 (873)
|++++||++|.|++|.||.|++.||++|.+|++.........++|++|++++.+++||..| |.. +.++++||+|+
T Consensus 321 lk~k~yP~~TqV~rv~EG~Esa~FKq~F~~W~~~~~t~~~~~~rG~va~l~q~~~~Dv~~L~~~~~~aa~~~mvddg~G~ 400 (827)
T KOG0443|consen 321 LKKKKYPPNTQVVRVLEGAESAPFKQLFDSWPDKDQTNGKEEGRGKVAALLQVKGFDVTGLHKSPKMAAQPQMVDDGSGK 400 (827)
T ss_pred HHhccCCCCceEEEecCCCcchhHHHHHhhCccccccccccccccccceeeeecccchhhcccCccccccccceecCCCc
Confidence 9999999999999999999999999999999998776667788999999999999999999 333 45789999999
Q ss_pred EEEEEEECCceeecCCcccceeeeccEEEEEeecC-CCCcceEEEEEEcCCCCCHHHHHHHHHHHHHHHHhccCCceEEE
Q 002853 391 LKVWRVNGDELSLLPAAEQMKLFSGDCYIVKYTYP-GNGRDENVIYAWFGHESMTEDRAAAISHMSAIVDSTRGEAVMAQ 469 (873)
Q Consensus 391 l~VWrV~~~~~~~lp~~~~G~FysgdcYIvl~ty~-~~~~~~~~iy~W~G~~ss~~e~~~aa~~a~~l~~~~~~~~vq~R 469 (873)
|+||||++..+++||..++|+||+||||||+|+|+ ++.+.+|+||.|+|++|+++|+.+|+.+|++|+++++|.|+|+|
T Consensus 401 ~~Vwrv~~~~~~~v~~~~~g~fy~GdcYlvlYtY~~~~~~~~~iiY~W~G~qAs~ee~~~a~~~A~~l~~s~kg~~vq~r 480 (827)
T KOG0443|consen 401 LQVWRVEGDEKQPVDIADYGKFYGGDCYLVLYTYPRGEERTEHIIYVWQGKQASQEERAAAISLAKALVESLKGVPVQVR 480 (827)
T ss_pred EEEEEEcCceeeecChHHhCcccCCCeEEEEEeeccCCcccceEEEEEecccCCHHHHHHHHHHHHHHhhhcCCceeEEE
Confidence 99999999999999999999999999999999998 55699999999999999999999999999999999999999999
Q ss_pred eeccCCcHHHHhhcCc-EEEEecCcccccceeeeecccccccccccceEEEEEEecCCCceEEEEeccCCCCcCCCCeEE
Q 002853 470 VHQDMEPVQFFLIFQS-LIVFKGGLSTQYKKFIVEEGIVDETYDEKKMALFCIQGTSPCNMQAFQVDRVSTCLNSSYCYI 548 (873)
Q Consensus 470 v~QGkEp~~Fl~lF~~-~iI~kGg~~~~~~~~~~~~~~~~~~~~~~~~~Lf~V~g~~~~~~~avqV~~~~ssLnS~d~fI 548 (873)
|+||+||+||++||++ |||++||++. .+++|+..+++||||+|+.++|++|+||++.++||||+||||
T Consensus 481 v~~GkEP~hF~~iFqgkliifkgg~s~-----------~g~~~~~~~t~LFqV~Gt~~~n~kAveV~~~A~SLNSsd~fv 549 (827)
T KOG0443|consen 481 IYEGKEPPHFLAIFQGKLIIFKGGTSE-----------EGNTYPAPSTRLFQVQGTGPSNTKAVEVPAVASSLNSSDCFV 549 (827)
T ss_pred eecCCCChHHHHhhCCceEEEecCcCC-----------CCCccCCCceEEEEEeccCcccceeEeeccccccccccceEE
Confidence 9999999999999999 9999999872 246778888999999999999999999999999999999999
Q ss_pred EEcCCeEEEEECCCCCHHHHHHHHHHHHHhCCCCceEEeecCCCchhhhhhcCCCCCCCccc-cccCCCCCCeeEEEEec
Q 002853 549 LQNGASVFTWIGNLSSSRDHDLLDRMVELINPTWQPISVREGSEPEVFWNALGGKSEYPREK-EIKGFIEDPHLFTCTLT 627 (873)
Q Consensus 549 L~~~~~vyvW~G~~ss~~e~~~a~~~a~~l~~~~~~~~v~EG~E~~~FW~~LGg~~~y~~~~-~~~~~~~~prLF~~s~~ 627 (873)
|+++.++|+|+|++|+.+||++|++++..|+ +.+...+.||+||++||++|||+.+|++.+ ......++||||.|++.
T Consensus 550 L~t~s~~ylW~G~gss~~e~e~A~~v~~~l~-~~~~~~v~EG~Ep~~FWe~LGGk~~Y~~sk~~~~~~~~~PrLF~Cs~~ 628 (827)
T KOG0443|consen 550 LKTGSSVYLWCGKGSSGDEREMAKRVLDLLK-RCQSTAVKEGSEPDEFWELLGGKAEYPSSKRLEEKPERDPRLFSCSNK 628 (827)
T ss_pred EecCCeEEEEeCCCCCHHHHHHHHHHHHHHh-cCChhhhhcCCCchhhHHHcCCCCCCCcCccccccCCCCCcEEEEEec
Confidence 9999999999999999999999999999997 355677899999999999999999999988 44567889999999999
Q ss_pred CCceEEeeecccccCCCCCCCEEEEeCCCeEEEEEcCCCCHHHHHHHHHHHHHHHHhcccccCCCCCCcEEEecCCCCCh
Q 002853 628 EGDLKVKEIYNFTQDDLTTEDILVLDCCREIYVWIGCHSDLNSKQQALNIGQKFLETDILVEGLSLETPIYVVTEGHEPP 707 (873)
Q Consensus 628 ~G~~~v~Ei~~F~Q~DL~~ddv~ILD~~~~IyVWiG~~a~~~ek~~Al~~A~~Yl~~~~~~~~~~~~~pi~~V~eG~EP~ 707 (873)
+|.|.++||++|+||||++|||||||||++||||||++++++||..|+.+|++|++++ ..+||++.|||++|+||+||+
T Consensus 629 ~g~f~~~EI~~F~QdDL~tdDi~lLDt~~evfvWvG~~a~~~eK~~Al~~~~~yl~~~-~p~gr~~~TPI~vV~qG~EPp 707 (827)
T KOG0443|consen 629 TGSFVVEEIYNFTQDDLMTDDIMLLDTWSEVFVWVGQEANEKEKEEALTIGQKYLETD-LPEGRDPRTPIYVVKQGHEPP 707 (827)
T ss_pred CCcEEEEEecCcchhhccccceEEEecCceEEEEecCCCChhHHHHHHHHHHHHHhcc-CcccCCCCCceEEecCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999 446999999999999999999
Q ss_pred hchhcc-ccCcccccccCCcHHHHHHHhcCCCccccccccCCCCCCCCCCccccccccccCCCCCCCCCCCcccccccCC
Q 002853 708 FFTCFF-AWDPLKAKMHGNSFERKLAILKGRPSIEASVRNSWKPYFGETTPDSLRSRSVSSNGLQGSGSPIPSISSSKLN 786 (873)
Q Consensus 708 ~Ft~~F-~Wd~~k~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (873)
+||++| +||+.| +||++|++.|+++.+ +..++.++. ++.++
T Consensus 708 ~Ftg~F~~WD~~k-----wS~~~~~~~l~~~~~------~~~~~~~~~---------------------------~a~~~ 749 (827)
T KOG0443|consen 708 FFTGFFLSWDPSK-----WSFQKKLKDLKNKVT------YNARAISEI---------------------------SADVR 749 (827)
T ss_pred hhhccccccCCcc-----cccchHHHHHhcccc------cchhhccch---------------------------hhhhh
Confidence 999999 899998 899999999999864 222222222 22222
Q ss_pred CcccCCcCCCchhhhhhcccCCCCCCCCCCCCCCCCCccccccccccccCCcccccccceeeeccCCCCCCCcccccccc
Q 002853 787 SADRHRAFCETPTAQLLFSESTLDKDSLTGEPSSSSKSTKAIQFNESEAGVSSLIYSYEQLRVDSRNPVIGIDVTKREVS 866 (873)
Q Consensus 787 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~e~y 866 (873)
| ||++.|..+ + ++.-.++||||||+++|+||||+||.||||+|
T Consensus 750 s--------------k~~~~~~~~-~----------------------~~~p~~~~~~e~l~~~~~~~~~~id~~rrE~y 792 (827)
T KOG0443|consen 750 S--------------KLYPDSLNP-D----------------------SEAPRPAFPYEQLLTQSEDPVPDIDPTRREAY 792 (827)
T ss_pred c--------------ccccccCCC-C----------------------ccCcccCCCHHHHhccccCcCCCCChhHhhhh
Confidence 2 445554432 1 00111689999999999999999999999999
Q ss_pred ccc
Q 002853 867 PVA 869 (873)
Q Consensus 867 l~~ 869 (873)
|+.
T Consensus 793 Ls~ 795 (827)
T KOG0443|consen 793 LSE 795 (827)
T ss_pred ccH
Confidence 985
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0445 consensus Actin regulatory protein supervillin (gelsolin/villin family) [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0443 consensus Actin regulatory proteins (gelsolin/villin family) [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0445 consensus Actin regulatory protein supervillin (gelsolin/villin family) [Cytoskeleton] | Back alignment and domain information |
|---|
| >smart00262 GEL Gelsolin homology domain | Back alignment and domain information |
|---|
| >smart00262 GEL Gelsolin homology domain | Back alignment and domain information |
|---|
| >PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) [] | Back alignment and domain information |
|---|
| >PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) [] | Back alignment and domain information |
|---|
| >PTZ00395 Sec24-related protein; Provisional | Back alignment and domain information |
|---|
| >PTZ00395 Sec24-related protein; Provisional | Back alignment and domain information |
|---|
| >KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PLN00162 transport protein sec23; Provisional | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 873 | ||||
| 1d0n_A | 729 | The Crystal Structure Of Calcium-Free Equine Plasma | 1e-89 | ||
| 2fgh_A | 731 | Atp Bound Gelsolin Length = 731 | 1e-89 | ||
| 3ffn_A | 782 | Crystal Structure Of Calcium-Free Human Gelsolin Le | 7e-89 | ||
| 1rgi_G | 346 | Crystal Structure Of Gelsolin Domains G1-G3 Bound T | 7e-46 | ||
| 1rgi_G | 346 | Crystal Structure Of Gelsolin Domains G1-G3 Bound T | 3e-18 | ||
| 3fg7_A | 398 | The Crystal Structure Of Villin Domain 6 Length = 3 | 4e-45 | ||
| 3ffk_A | 377 | Crystal Structure Of Human Gelsolin Domains G1-G3 B | 2e-44 | ||
| 3ffk_A | 377 | Crystal Structure Of Human Gelsolin Domains G1-G3 B | 3e-19 | ||
| 1p8x_A | 344 | The Calcium-activated C-terminal Half Of Gelsolin L | 1e-42 | ||
| 1h1v_G | 331 | Gelsolin G4-G6ACTIN COMPLEX Length = 331 | 2e-42 | ||
| 1nph_A | 329 | Gelsolin Domains 4-6 In Active, Actin Free Conforma | 5e-42 | ||
| 3fg6_A | 371 | Structure Of The C-terminus Of Adseverin Length = 3 | 4e-38 | ||
| 1j72_A | 347 | Crystal Structure Of Mutant Macrophage Capping Prot | 5e-32 | ||
| 1j72_A | 347 | Crystal Structure Of Mutant Macrophage Capping Prot | 7e-15 | ||
| 1jhw_A | 347 | Ca2+-Binding Mimicry In The Crystal Structure Of Th | 7e-32 | ||
| 1jhw_A | 347 | Ca2+-Binding Mimicry In The Crystal Structure Of Th | 7e-15 | ||
| 3tu5_B | 297 | Actin Complex With Gelsolin Segment 1 Fused To Cobl | 4e-22 | ||
| 3tu5_B | 297 | Actin Complex With Gelsolin Segment 1 Fused To Cobl | 4e-05 | ||
| 1d4x_G | 126 | Crystal Structure Of Caenorhabditis Elegans Mg-Atp | 5e-22 | ||
| 1d4x_G | 126 | Crystal Structure Of Caenorhabditis Elegans Mg-Atp | 4e-05 | ||
| 1yag_G | 125 | Structure Of The Yeast Actin-human Gelsolin Segment | 5e-22 | ||
| 1yag_G | 125 | Structure Of The Yeast Actin-human Gelsolin Segment | 1e-04 | ||
| 1p8z_G | 136 | Complex Between Rabbit Muscle Alpha-Actin: Human Ge | 5e-22 | ||
| 1p8z_G | 136 | Complex Between Rabbit Muscle Alpha-Actin: Human Ge | 8e-06 | ||
| 3ci5_G | 126 | Complex Of Phosphorylated Dictyostelium Discoideum | 5e-22 | ||
| 3ci5_G | 126 | Complex Of Phosphorylated Dictyostelium Discoideum | 2e-04 | ||
| 3cip_G | 128 | Complex Of Dictyostelium Discoideum Actin With Gels | 5e-22 | ||
| 3cip_G | 128 | Complex Of Dictyostelium Discoideum Actin With Gels | 1e-04 | ||
| 2ff3_A | 150 | Crystal Structure Of Gelsolin Domain 1:n-Wasp V2 Mo | 6e-22 | ||
| 2ff3_A | 150 | Crystal Structure Of Gelsolin Domain 1:n-Wasp V2 Mo | 5e-05 | ||
| 1t44_G | 147 | Structural Basis Of Actin Sequestration By Thymosin | 7e-22 | ||
| 1t44_G | 147 | Structural Basis Of Actin Sequestration By Thymosin | 2e-05 | ||
| 1eqy_S | 125 | Complex Between Rabbit Muscle Alpha-Actin: Human Ge | 9e-22 | ||
| 1eqy_S | 125 | Complex Between Rabbit Muscle Alpha-Actin: Human Ge | 9e-05 | ||
| 1c0f_S | 127 | Crystal Structure Of Dictyostelium Caatp-Actin In C | 1e-21 | ||
| 1c0f_S | 127 | Crystal Structure Of Dictyostelium Caatp-Actin In C | 9e-05 | ||
| 2vik_A | 126 | Refined Structure Of The Actin-Severing Domain Vill | 2e-19 | ||
| 2vik_A | 126 | Refined Structure Of The Actin-Severing Domain Vill | 3e-04 | ||
| 2llf_A | 107 | Sixth Gelsolin-like Domain Of Villin In 5 Mm Cacl2 | 2e-14 | ||
| 1svq_A | 114 | Structure Of Severin Domain 2 In Solution Length = | 9e-11 | ||
| 1svy_A | 114 | Severin Domain 2, 1.75 Angstrom Crystal Structure L | 2e-10 | ||
| 1kcq_A | 104 | Human Gelsolin Domain 2 With A Cd2+ Bound Length = | 6e-08 |
| >pdb|1D0N|A Chain A, The Crystal Structure Of Calcium-Free Equine Plasma Gelsolin. Length = 729 | Back alignment and structure |
|
| >pdb|2FGH|A Chain A, Atp Bound Gelsolin Length = 731 | Back alignment and structure |
| >pdb|3FFN|A Chain A, Crystal Structure Of Calcium-Free Human Gelsolin Length = 782 | Back alignment and structure |
| >pdb|1RGI|G Chain G, Crystal Structure Of Gelsolin Domains G1-G3 Bound To Actin Length = 346 | Back alignment and structure |
| >pdb|1RGI|G Chain G, Crystal Structure Of Gelsolin Domains G1-G3 Bound To Actin Length = 346 | Back alignment and structure |
| >pdb|3FG7|A Chain A, The Crystal Structure Of Villin Domain 6 Length = 398 | Back alignment and structure |
| >pdb|3FFK|A Chain A, Crystal Structure Of Human Gelsolin Domains G1-G3 Bound To Actin Length = 377 | Back alignment and structure |
| >pdb|3FFK|A Chain A, Crystal Structure Of Human Gelsolin Domains G1-G3 Bound To Actin Length = 377 | Back alignment and structure |
| >pdb|1P8X|A Chain A, The Calcium-activated C-terminal Half Of Gelsolin Length = 344 | Back alignment and structure |
| >pdb|1H1V|G Chain G, Gelsolin G4-G6ACTIN COMPLEX Length = 331 | Back alignment and structure |
| >pdb|1NPH|A Chain A, Gelsolin Domains 4-6 In Active, Actin Free Conformation Identifies Sites Of Regulatory Calcium Ions Length = 329 | Back alignment and structure |
| >pdb|3FG6|A Chain A, Structure Of The C-terminus Of Adseverin Length = 371 | Back alignment and structure |
| >pdb|1J72|A Chain A, Crystal Structure Of Mutant Macrophage Capping Protein (Cap G) With Actin-Severing Activity In The Ca2+-Free Form Length = 347 | Back alignment and structure |
| >pdb|1J72|A Chain A, Crystal Structure Of Mutant Macrophage Capping Protein (Cap G) With Actin-Severing Activity In The Ca2+-Free Form Length = 347 | Back alignment and structure |
| >pdb|1JHW|A Chain A, Ca2+-Binding Mimicry In The Crystal Structure Of The Eu3+-Bound Mutant Human Macrophage Capping Protein Cap G Length = 347 | Back alignment and structure |
| >pdb|1JHW|A Chain A, Ca2+-Binding Mimicry In The Crystal Structure Of The Eu3+-Bound Mutant Human Macrophage Capping Protein Cap G Length = 347 | Back alignment and structure |
| >pdb|3TU5|B Chain B, Actin Complex With Gelsolin Segment 1 Fused To Cobl Segment Length = 297 | Back alignment and structure |
| >pdb|3TU5|B Chain B, Actin Complex With Gelsolin Segment 1 Fused To Cobl Segment Length = 297 | Back alignment and structure |
| >pdb|1D4X|G Chain G, Crystal Structure Of Caenorhabditis Elegans Mg-Atp Actin Complexed With Human Gelsolin Segment 1 At 1.75 A Resolution Length = 126 | Back alignment and structure |
| >pdb|1D4X|G Chain G, Crystal Structure Of Caenorhabditis Elegans Mg-Atp Actin Complexed With Human Gelsolin Segment 1 At 1.75 A Resolution Length = 126 | Back alignment and structure |
| >pdb|1YAG|G Chain G, Structure Of The Yeast Actin-human Gelsolin Segment 1 Complex Length = 125 | Back alignment and structure |
| >pdb|1YAG|G Chain G, Structure Of The Yeast Actin-human Gelsolin Segment 1 Complex Length = 125 | Back alignment and structure |
| >pdb|1P8Z|G Chain G, Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin Residues Val26-Glu156 Length = 136 | Back alignment and structure |
| >pdb|1P8Z|G Chain G, Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin Residues Val26-Glu156 Length = 136 | Back alignment and structure |
| >pdb|3CI5|G Chain G, Complex Of Phosphorylated Dictyostelium Discoideum Actin With Gelsolin Length = 126 | Back alignment and structure |
| >pdb|3CI5|G Chain G, Complex Of Phosphorylated Dictyostelium Discoideum Actin With Gelsolin Length = 126 | Back alignment and structure |
| >pdb|3CIP|G Chain G, Complex Of Dictyostelium Discoideum Actin With Gelsolin Length = 128 | Back alignment and structure |
| >pdb|3CIP|G Chain G, Complex Of Dictyostelium Discoideum Actin With Gelsolin Length = 128 | Back alignment and structure |
| >pdb|2FF3|A Chain A, Crystal Structure Of Gelsolin Domain 1:n-Wasp V2 Motif Hybrid In Complex With Actin Length = 150 | Back alignment and structure |
| >pdb|2FF3|A Chain A, Crystal Structure Of Gelsolin Domain 1:n-Wasp V2 Motif Hybrid In Complex With Actin Length = 150 | Back alignment and structure |
| >pdb|1T44|G Chain G, Structural Basis Of Actin Sequestration By Thymosin-B4: Implications For Arp23 ACTIVATION Length = 147 | Back alignment and structure |
| >pdb|1T44|G Chain G, Structural Basis Of Actin Sequestration By Thymosin-B4: Implications For Arp23 ACTIVATION Length = 147 | Back alignment and structure |
| >pdb|1EQY|S Chain S, Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin Domain 1 Length = 125 | Back alignment and structure |
| >pdb|1EQY|S Chain S, Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin Domain 1 Length = 125 | Back alignment and structure |
| >pdb|1C0F|S Chain S, Crystal Structure Of Dictyostelium Caatp-Actin In Complex With Gelsolin Segment 1 Length = 127 | Back alignment and structure |
| >pdb|1C0F|S Chain S, Crystal Structure Of Dictyostelium Caatp-Actin In Complex With Gelsolin Segment 1 Length = 127 | Back alignment and structure |
| >pdb|2VIK|A Chain A, Refined Structure Of The Actin-Severing Domain Villin 14t, Determined By Solution Nmr, Minimized Average Structure Length = 126 | Back alignment and structure |
| >pdb|2VIK|A Chain A, Refined Structure Of The Actin-Severing Domain Villin 14t, Determined By Solution Nmr, Minimized Average Structure Length = 126 | Back alignment and structure |
| >pdb|2LLF|A Chain A, Sixth Gelsolin-like Domain Of Villin In 5 Mm Cacl2 Length = 107 | Back alignment and structure |
| >pdb|1SVQ|A Chain A, Structure Of Severin Domain 2 In Solution Length = 114 | Back alignment and structure |
| >pdb|1SVY|A Chain A, Severin Domain 2, 1.75 Angstrom Crystal Structure Length = 114 | Back alignment and structure |
| >pdb|1KCQ|A Chain A, Human Gelsolin Domain 2 With A Cd2+ Bound Length = 104 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G* Length = 729 | Back alignment and structure |
|---|
Score = 538 bits (1387), Expect = 0.0
Identities = 214/747 (28%), Positives = 353/747 (47%), Gaps = 43/747 (5%)
Query: 9 DSAFEGAGKKLGLEIWCIENLQLVSVPKSSHGKFYTGSAYVILNTALLKSGPPQHDIHYW 68
F AGK+ GL+IW +E LV VP + +G F+TG AYVIL T L++G Q+D+HYW
Sbjct: 3 HPEFLKAGKEPGLQIWRVEKFDLVPVPPNLYGDFFTGDAYVILKTVQLRNGILQYDLHYW 62
Query: 69 LGNDVNEEDSTLVSDKALELDAALGSCTVQYREVQGQETEKFLSYFRPCIIPLDGKYSLR 128
LGN+ ++++S + ++LD L VQ+REVQG E+ FL YF+ + G +
Sbjct: 63 LGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASG 122
Query: 129 SGKSNGETYKISML-TCKGDHVVRVKEVPFSRSSLNHNDVFIVDTASKIFLFSGCNSSIQ 187
+ L KG VVR EVP S S N+ D FI+D + I+ + G S+
Sbjct: 123 FKHVVPNEVVVQRLLQVKGRRVVRATEVPVSWESFNNGDCFILDLGNNIYQWCGSKSNRF 182
Query: 188 ERAKALEVVQYIKEDKHGGKCGVATVEDGKFVGDSDVGEFWSLFGGYAPIPRDSPSAFQQ 247
ER KA +V + I++++ G+ V+ E+G + + G +P + ++
Sbjct: 183 ERLKATQVSKGIRDNERSGRAQVSVFEEGA-----EPEAMLQVLGPKPTLPEATEDTVKE 237
Query: 248 QPDTPSTTFFW--INLQGKLC---QIAANSLNKDMLEKDKCYMLDCVNE--VFVWTGRNT 300
+ N G + N + L + C++LD + +FVW G+
Sbjct: 238 DAANRKLAKLYKVSNGAGPMVVSLVADENPFAQGALRSEDCFILDHGKDGKIFVWKGKQA 297
Query: 301 SITERRISISASEDFLRNQGRTTGTHLTFLTEGLETTVFRSYFDSWPQ-IAEPKLYDEGR 359
++ ER+ ++ + DF+ T ++ L EG ET +FR +F +W L
Sbjct: 298 NMEERKAALKTASDFISKMDYPKQTQVSVLPEGGETPLFRQFFKNWRDPDQTEGLGLAYL 357
Query: 360 EKVAAIFKQQGHDVKELPEE-----DFEPYVNCRGILKVWRVNGDELSLLPAAEQMKLFS 414
A ++ D L + G ++WRV G + A + +
Sbjct: 358 SSHIAHVERVPFDAATLHTSTAMAAQHGMDDDGTGQKQIWRVEGSNKVPVDPATYGQFYG 417
Query: 415 GDCYIVKYTYPGNGRDENVIYAWFGHESMTEDRAAAISHMSAIVDSTRGEAVMAQVHQDM 474
GD YI+ Y Y R +IY W G +S ++ AA+ + + + G V ++V Q
Sbjct: 418 GDSYIILYNYRHGSRQGQIIYNWQGAQSTQDEVAASAILTAQLDEELGGTPVQSRVVQGK 477
Query: 475 EPVQFFLIF--QSLIVFKGGLSTQYKKFIVEEGIVDETYDEKKMALFCIQGTSPCNMQAF 532
EP +F + +IV+KGG S + + LF ++ +S +A
Sbjct: 478 EPAHLMSLFGGKPMIVYKGGTSREGGQ-----------TAPASTRLFQVRASSSGATRAV 526
Query: 533 QVDRVSTCLNSSYCYILQNGASVFTWIGNLSSSRDHDLLDRMVELINPTWQPISVREGSE 592
++ + LNS+ ++L+ ++ + W+G +S + ++ ++ QP+ V EGSE
Sbjct: 527 EIIPKAGALNSNDAFVLKTPSAAYLWVGAGASEAEKTGAQELLRVLRA--QPVQVAEGSE 584
Query: 593 PEVFWNALGGKSEY---PREKEIKGFIEDPHLFTCTLTEGDLKVKEIY-NFTQDDLTTED 648
P+ FW ALGGK+ Y PR K+ K P LF C+ G ++E+ F Q+DL T+D
Sbjct: 585 PDSFWEALGGKATYRTSPRLKDKKMDAHPPRLFACSNKIGRFVIEEVPGEFMQEDLATDD 644
Query: 649 ILVLDCCREIYVWIGCHSDLNSKQQALNIGQKFLETDILVEGLSLETPIYVVTEGHEPPF 708
+++LD +++VW+G S K +AL +++++TD TPI VV +G EPP
Sbjct: 645 VMLLDTWDQVFVWVGKDSQDEEKTEALTSAKRYIDTD--PAHRDRRTPITVVKQGFEPPS 702
Query: 709 FT-CFFAWDPLKAKMHGNSFERKLAIL 734
F F WD + + +R LA L
Sbjct: 703 FVGWFLGWDDSYWSV--DPLDRALAEL 727
|
| >3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} Length = 398 | Back alignment and structure |
|---|
| >3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} Length = 398 | Back alignment and structure |
|---|
| >1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A Length = 347 | Back alignment and structure |
|---|
| >1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A Length = 347 | Back alignment and structure |
|---|
| >1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A Length = 347 | Back alignment and structure |
|---|
| >2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A Length = 344 | Back alignment and structure |
|---|
| >2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A Length = 344 | Back alignment and structure |
|---|
| >3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens} Length = 371 | Back alignment and structure |
|---|
| >3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens} Length = 371 | Back alignment and structure |
|---|
| >3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens} Length = 371 | Back alignment and structure |
|---|
| >3cip_G Gelsolin; actin, dictyostelium discoideum, actin-associated methyl histidine, ATP-binding, cytoskeleton, nucleotide-BIN phosphoprotein; HET: HIC ATP; 1.60A {Homo sapiens} SCOP: d.109.1.1 PDB: 3ci5_G* 1p8z_G* 1d4x_G* 1nlv_G* 1mdu_A* 1nm1_G* 1nmd_G* 1yag_G* 1yvn_G* 3cjb_G* 3cjc_G* 1esv_S* 1eqy_S* 1c0g_S* 1c0f_S* 1dej_S* 3a5l_S* 3a5m_S* 3a5n_S* 3a5o_S* Length = 128 | Back alignment and structure |
|---|
| >3cip_G Gelsolin; actin, dictyostelium discoideum, actin-associated methyl histidine, ATP-binding, cytoskeleton, nucleotide-BIN phosphoprotein; HET: HIC ATP; 1.60A {Homo sapiens} SCOP: d.109.1.1 PDB: 3ci5_G* 1p8z_G* 1d4x_G* 1nlv_G* 1mdu_A* 1nm1_G* 1nmd_G* 1yag_G* 1yvn_G* 3cjb_G* 3cjc_G* 1esv_S* 1eqy_S* 1c0g_S* 1c0f_S* 1dej_S* 3a5l_S* 3a5m_S* 3a5n_S* 3a5o_S* Length = 128 | Back alignment and structure |
|---|
| >2ff3_A Gelsolin; protein-protein complex, structural protein/contractIle protein complex; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1 PDB: 2ff6_G* Length = 150 | Back alignment and structure |
|---|
| >2ff3_A Gelsolin; protein-protein complex, structural protein/contractIle protein complex; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1 PDB: 2ff6_G* Length = 150 | Back alignment and structure |
|---|
| >1t44_G Chimera of gelsolin domain 1 and C-terminal domain of thymosin beta-4; structural protein; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1 Length = 147 | Back alignment and structure |
|---|
| >1t44_G Chimera of gelsolin domain 1 and C-terminal domain of thymosin beta-4; structural protein; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1 Length = 147 | Back alignment and structure |
|---|
| >2vik_A Villin 14T; actin-binding protein, capping protein, calcium-binding protein, cytoskeletal protein; NMR {Gallus gallus} SCOP: d.109.1.1 PDB: 2vil_A Length = 126 | Back alignment and structure |
|---|
| >2vik_A Villin 14T; actin-binding protein, capping protein, calcium-binding protein, cytoskeletal protein; NMR {Gallus gallus} SCOP: d.109.1.1 PDB: 2vil_A Length = 126 | Back alignment and structure |
|---|
| >1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1 Length = 104 | Back alignment and structure |
|---|
| >1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1 Length = 104 | Back alignment and structure |
|---|
| >1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1 Length = 104 | Back alignment and structure |
|---|
| >1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1 Length = 104 | Back alignment and structure |
|---|
| >1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A Length = 114 | Back alignment and structure |
|---|
| >1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A Length = 114 | Back alignment and structure |
|---|
| >1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A Length = 114 | Back alignment and structure |
|---|
| >1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A Length = 114 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 873 | |||
| 1d0n_A | 729 | Horse plasma gelsolin; mixed alpha-beta structure, | 100.0 | |
| 1j72_A | 347 | Macrophage capping protein; actin, human, CAP G, G | 100.0 | |
| 3fg6_A | 371 | Adseverin, scinderin; C-terminus of adseverin, act | 100.0 | |
| 2fh1_A | 344 | Gelsolin; calcium, contractIle protein; 1.55A {Hom | 100.0 | |
| 3fg7_A | 398 | Villin-1; actin binding protein, gelsolin, actin c | 100.0 | |
| 3fg6_A | 371 | Adseverin, scinderin; C-terminus of adseverin, act | 100.0 | |
| 3fg7_A | 398 | Villin-1; actin binding protein, gelsolin, actin c | 100.0 | |
| 2fh1_A | 344 | Gelsolin; calcium, contractIle protein; 1.55A {Hom | 100.0 | |
| 1j72_A | 347 | Macrophage capping protein; actin, human, CAP G, G | 100.0 | |
| 1d0n_A | 729 | Horse plasma gelsolin; mixed alpha-beta structure, | 100.0 | |
| 3tu5_B | 297 | Gelsolin, protein cordon-BLeu, thymosin beta-4; un | 100.0 | |
| 2ff3_A | 150 | Gelsolin; protein-protein complex, structural prot | 100.0 | |
| 3cip_G | 128 | Gelsolin; actin, dictyostelium discoideum, actin-a | 100.0 | |
| 1t44_G | 147 | Chimera of gelsolin domain 1 and C-terminal domain | 100.0 | |
| 2vik_A | 126 | Villin 14T; actin-binding protein, capping protein | 100.0 | |
| 3tu5_B | 297 | Gelsolin, protein cordon-BLeu, thymosin beta-4; un | 100.0 | |
| 2vik_A | 126 | Villin 14T; actin-binding protein, capping protein | 100.0 | |
| 3cip_G | 128 | Gelsolin; actin, dictyostelium discoideum, actin-a | 100.0 | |
| 2ff3_A | 150 | Gelsolin; protein-protein complex, structural prot | 100.0 | |
| 1t44_G | 147 | Chimera of gelsolin domain 1 and C-terminal domain | 100.0 | |
| 1svq_A | 114 | Severin; actin-binding; NMR {Dictyostelium discoid | 99.94 | |
| 1kcq_A | 104 | Gelsolin, brevin, ADF, AGEL; alpha-beta structure, | 99.92 | |
| 1kcq_A | 104 | Gelsolin, brevin, ADF, AGEL; alpha-beta structure, | 99.86 | |
| 1svq_A | 114 | Severin; actin-binding; NMR {Dictyostelium discoid | 99.85 | |
| 1qzp_A | 68 | Dematin; villin headpiece, actin binding domain, p | 97.23 | |
| 1ujs_A | 88 | Actin-binding LIM protein homologue; VHP domain, s | 96.82 | |
| 1yu8_X | 67 | Villin; alpha helix, 3-10 helix, structural protei | 96.72 | |
| 2k6m_S | 67 | Supervillin; SVHP, HP, headpiece, archvillin, acti | 96.5 | |
| 3eh2_A | 766 | Protein transport protein SEC24C; copii-coat prote | 93.32 | |
| 3eh2_A | 766 | Protein transport protein SEC24C; copii-coat prote | 93.07 | |
| 3efo_B | 770 | SEC24 related gene family, member D; copii, coat p | 92.02 | |
| 1pcx_A | 810 | Protein transport protein SEC24; 2.50A {Saccharomy | 91.42 | |
| 1m2o_A | 768 | SEC23, protein transport protein SEC23, SEC23P; zi | 91.07 | |
| 2nut_A | 769 | Protein transport protein SEC23A; human copii SEC2 | 90.88 | |
| 1pcx_A | 810 | Protein transport protein SEC24; 2.50A {Saccharomy | 89.57 | |
| 3efo_B | 770 | SEC24 related gene family, member D; copii, coat p | 89.53 | |
| 3eh1_A | 751 | Protein transport protein SEC24B; copii coat prote | 89.47 | |
| 1m2v_B | 926 | SEC24, protein transport protein SEC24, SEC24P, SE | 88.23 | |
| 1m2v_B | 926 | SEC24, protein transport protein SEC24, SEC24P, SE | 87.34 | |
| 3eh1_A | 751 | Protein transport protein SEC24B; copii coat prote | 83.59 | |
| 1m2o_A | 768 | SEC23, protein transport protein SEC23, SEC23P; zi | 83.32 | |
| 2nut_A | 769 | Protein transport protein SEC23A; human copii SEC2 | 80.3 |
| >1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-165 Score=1487.06 Aligned_cols=705 Identities=30% Similarity=0.548 Sum_probs=636.0
Q ss_pred cCCcccccCCccccEEEEEEECCeEeecCCCCCCccccCCeEEEEeeeecCCCCCceEEEEEccCCcCchhhhHHHHHHH
Q 002853 7 DIDSAFEGAGKKLGLEIWCIENLQLVSVPKSSHGKFYTGSAYVILNTALLKSGPPQHDIHYWLGNDVNEEDSTLVSDKAL 86 (873)
Q Consensus 7 ~~d~~~~g~G~~~gl~iWrIe~~~~~~vp~~~~G~Fy~gdsYIVl~t~~~~~g~~~~~i~~W~G~~ss~de~g~AA~~av 86 (873)
++||+|.++|+++|++||||++|+++|||++.||+||+||||||||||...+|..+|+||||+|++||+||+|+||++||
T Consensus 1 ~~~~~f~~~g~~~g~~iWrIe~~~~~~v~~~~~G~Fy~gdsYivL~t~~~~~~~~~~~i~~W~G~~ss~de~g~aA~~tv 80 (729)
T 1d0n_A 1 VEHPEFLKAGKEPGLQIWRVEKFDLVPVPPNLYGDFFTGDAYVILKTVQLRNGILQYDLHYWLGNECSQDESGAAAIFTV 80 (729)
T ss_dssp CCCTTGGGTTSSSEEEEEEECSSSEEECCGGGTTEEETTCEEEEEEEEECTTSCEEEEEEEEECTTCCHHHHHHHHHHHH
T ss_pred CcchhhhhcccCCCeEEEEEcCCEEEeCChHhcCcccCCCEEEEEEeccCCCCccceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46999999999999999999999999999999999999999999999987788889999999999999999999999999
Q ss_pred HHHHHhCCCceEEEeeccCCcHHHHhhhCCcEEEecCCccCCCCCCCCCc-cceEEEEeeCcceEEEEEecCCCCCccCC
Q 002853 87 ELDAALGSCTVQYREVQGQETEKFLSYFRPCIIPLDGKYSLRSGKSNGET-YKISMLTCKGDHVVRVKEVPFSRSSLNHN 165 (873)
Q Consensus 87 eLd~~lgg~~vq~Re~QG~Es~~Fl~~Fk~~ii~~~Gg~~sgf~~~~~~~-~~~rL~~vkG~~~v~~~eV~~s~sSLns~ 165 (873)
|||++|||.||||||+||+||++||+||+++|+|++||++|||+|++... ..+|||||||+++++++|||++++||||+
T Consensus 81 eLd~~lgg~~vq~Re~Qg~Es~~Fl~~Fk~~i~~~~Gg~~sgf~~v~~~~~~~~rL~~vkG~~~v~~~eV~~s~~SLns~ 160 (729)
T 1d0n_A 81 QLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGFKHVVPNEVVVQRLLQVKGRRVVRATEVPVSWESFNNG 160 (729)
T ss_dssp HHHHHTTSCCEEEEEETTCCCHHHHHTCSSCEEEESCCTTTTCCCCCCSSCCCCEEEEEECSSSCEEEEECSSGGGCCSS
T ss_pred HHHHHcCCcceEEEEecCCCCHHHHHhccCCcEEeeCCcccCcccccccCCCCcEEEEEECCCcEEEEEEeccHHHcCCC
Confidence 99999999999999999999999999999999999999999999998655 47899999999999999999999999999
Q ss_pred CceeeeCCCeEEEEeCCCCCHHHHHHHHHHHHHhhccCCCCceeEEEEcCCccCCCCChhhHHHHcCCCCCCCCCCCCCC
Q 002853 166 DVFIVDTASKIFLFSGCNSSIQERAKALEVVQYIKEDKHGGKCGVATVEDGKFVGDSDVGEFWSLFGGYAPIPRDSPSAF 245 (873)
Q Consensus 166 DvFILd~~~~iyvW~G~~S~~~Er~kA~~va~~ik~~~~~g~~~v~~veeG~~~~~~E~~eFw~~lGg~~~~~~~~~~~~ 245 (873)
||||||++++||+|+|++||.+||.+|+++|+.|++.++.|+|+|++|+||+ |+.+||++|||..+++.....+.
T Consensus 161 DvFILd~g~~iy~W~G~~s~~~Er~kA~~~a~~i~~~er~g~~~i~~v~Eg~-----e~~eFw~~LGg~~~~~~~~~~~~ 235 (729)
T 1d0n_A 161 DCFILDLGNNIYQWCGSKSNRFERLKATQVSKGIRDNERSGRAQVSVFEEGA-----EPEAMLQVLGPKPTLPEATEDTV 235 (729)
T ss_dssp SEEEEECSSEEEEEECTTCCHHHHHHHHHHHHHHHHHSGGGCSEEEEEETTC-----CCHHHHHHHCSCCCCCCCCGGGS
T ss_pred CeEEEEcCCEEEEEECCCCCHHHHHHHHHHHHHHhhhhcCCCccEEEecCCC-----ChHHHHHHcCCCcccCCCCcchh
Confidence 9999999999999999999999999999999999987888999999999995 78899999999987765432211
Q ss_pred -CCCCCCCceeEEEE-cCCCCEEEEecC---CCccccCCCCceEEeeCCC-e-EEEEecCCCCHHHHHHHHHHHHHHHHh
Q 002853 246 -QQQPDTPSTTFFWI-NLQGKLCQIAAN---SLNKDMLEKDKCYMLDCVN-E-VFVWTGRNTSITERRISISASEDFLRN 318 (873)
Q Consensus 246 -~~~~~~~~~rLy~v-~~~G~l~~~e~~---~~~q~~L~~~~vyILD~g~-e-IyVWiG~~as~~erk~Al~~A~~y~~~ 318 (873)
.+......+|||++ +.+|++.+.++. +|+|+||++++|||||||+ + ||||+|++|+..||+.||.+|++|+++
T Consensus 236 ~~~~~~~~~~rLy~vs~~~G~l~~~ev~~~~~~~q~~L~~~dv~ILD~g~~~~ifVW~Gk~a~~~er~~A~~~A~~y~~~ 315 (729)
T 1d0n_A 236 KEDAANRKLAKLYKVSNGAGPMVVSLVADENPFAQGALRSEDCFILDHGKDGKIFVWKGKQANMEERKAALKTASDFISK 315 (729)
T ss_dssp CCCCCCCCCCEEEEEECSSSSCEEEEEESSSSBCGGGCCTTSEEEEEEGGGTEEEEEECTTSCHHHHTTHHHHHHHHHHH
T ss_pred hhhhccccCcEEEEEECCCCCEEEEEeccCCCCCHHHcCCCCEEEEecCCccEEEEEECCCCCHHHHHHHHHHHHHHHhh
Confidence 12234567899977 568998877664 9999999999999999995 4 999999999999999999999999999
Q ss_pred cCCCCCceEEEecCCccchhhhhhcccCCCCCCCc-ccccchhHHHhhhhhcCCCCCCCC---cc--CCCCccccCCcEE
Q 002853 319 QGRTTGTHLTFLTEGLETTVFRSYFDSWPQIAEPK-LYDEGREKVAAIFKQQGHDVKELP---EE--DFEPYVNCRGILK 392 (873)
Q Consensus 319 ~~R~p~t~i~~V~eG~Ep~~Fk~~F~~W~~~~~~~-~~~~~~~kva~~~~~~~~dv~~lp---~~--e~~~~~d~~g~l~ 392 (873)
.+||++++|++|.||.||.+||++|.+|++..... +......+..+.+++.++|+..|+ .. +.+++++++|+|+
T Consensus 316 ~~~p~~t~i~~V~eG~Ep~~Fk~~F~~W~~~~~~~~~~~~~~~~~~a~~~~~~~d~~~l~~~p~~~~~~~~~d~g~g~l~ 395 (729)
T 1d0n_A 316 MDYPKQTQVSVLPEGGETPLFRQFFKNWRDPDQTEGLGLAYLSSHIAHVERVPFDAATLHTSTAMAAQHGMDDDGTGQKQ 395 (729)
T ss_dssp TTCCTTCEEEEEETTCCCHHHHTTBTTCCCTTCSSSSSCSCCCGGGTTCCCCCCCTTTGGGCHHHHHHHTCSSCSCSCEE
T ss_pred ccCCCCCeEEEEeCCCCCHHHHHHHhcCCCccccccccccccccccccccccccChHHhccCcccccccccccCCCCcEE
Confidence 99988899999999999999999999999864321 111112222234678899999993 22 3467889999999
Q ss_pred EEEEECCceeecCCcccceeeeccEEEEEeecCCCCcceEEEEEEcCCCCCHHHHHHHHHHHHHHHHhccCCceEEEeec
Q 002853 393 VWRVNGDELSLLPAAEQMKLFSGDCYIVKYTYPGNGRDENVIYAWFGHESMTEDRAAAISHMSAIVDSTRGEAVMAQVHQ 472 (873)
Q Consensus 393 VWrV~~~~~~~lp~~~~G~FysgdcYIvl~ty~~~~~~~~~iy~W~G~~ss~~e~~~aa~~a~~l~~~~~~~~vq~Rv~Q 472 (873)
||||+++++++||++++|+||+||||||+|||..+++.+|+||||+|++|+++++++||++|++|++.++|+|+|+|++|
T Consensus 396 vWrIe~~~~~~vp~~~~G~Fy~gd~Yivl~ty~~~g~~~~~iyfW~G~~ss~de~g~aa~~~veLd~~lgg~~vq~R~~Q 475 (729)
T 1d0n_A 396 IWRVEGSNKVPVDPATYGQFYGGDSYIILYNYRHGSRQGQIIYNWQGAQSTQDEVAASAILTAQLDEELGGTPVQSRVVQ 475 (729)
T ss_dssp EEEEETTEEEECCGGGTTEEETTSEEEEEEEEEETTEEEEEEEEEECTTSCHHHHHHHHHHHHHHHHTTTSCSEEEEEET
T ss_pred EEEEeCCEEEECChhhccEEcCCcEEEEEEEEecCCCceEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCCceEEeccc
Confidence 99999999999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred cCCcHHHHhhcC-c-EEEEecCcccccceeeeecccccccccccceEEEEEEecCCCceEEEEeccCCCCcCCCCeEEEE
Q 002853 473 DMEPVQFFLIFQ-S-LIVFKGGLSTQYKKFIVEEGIVDETYDEKKMALFCIQGTSPCNMQAFQVDRVSTCLNSSYCYILQ 550 (873)
Q Consensus 473 GkEp~~Fl~lF~-~-~iI~kGg~~~~~~~~~~~~~~~~~~~~~~~~~Lf~V~g~~~~~~~avqV~~~~ssLnS~d~fIL~ 550 (873)
|+||+|||+||+ + |+|++||.++. + .++....++||||+|+.+.+++++||++.++||||+|||||+
T Consensus 476 g~E~~~Fl~~F~g~~~ii~~Gg~~~~--------~---~~~~~~~~rLf~vrg~~~~~~~~~eV~~~~ssLns~d~fIL~ 544 (729)
T 1d0n_A 476 GKEPAHLMSLFGGKPMIVYKGGTSRE--------G---GQTAPASTRLFQVRASSSGATRAVEIIPKAGALNSNDAFVLK 544 (729)
T ss_dssp TCCCHHHHTTSTTSCEEEESSCCCSS--------C---CCCCCCSSEEEEEEECTTSCEEEEEECCCGGGCCSSSEEEEE
T ss_pred CCCCHHHHHhcCCCeEEEEeCCcccc--------C---ccCCCCCCEEEEEECCCCCceEEEEecCChhhcCcCCeEEEe
Confidence 999999999998 4 89999998641 1 122335689999999988899999999999999999999999
Q ss_pred cCCeEEEEECCCCCHHHHHHHHHHHHHhCCCCceEEeecCCCchhhhhhcCCCCCCCccccc-cC--CCCCCeeEEEEec
Q 002853 551 NGASVFTWIGNLSSSRDHDLLDRMVELINPTWQPISVREGSEPEVFWNALGGKSEYPREKEI-KG--FIEDPHLFTCTLT 627 (873)
Q Consensus 551 ~~~~vyvW~G~~ss~~e~~~a~~~a~~l~~~~~~~~v~EG~E~~~FW~~LGg~~~y~~~~~~-~~--~~~~prLF~~s~~ 627 (873)
++++||+|+|++|+.+||++|+.+|+.|... +.+|+||+||++||.+|||+.+|++.... ++ ....||||+||+.
T Consensus 545 ~~~~iyvW~G~~s~~~er~~A~~~a~~l~~~--~~~v~EG~E~~~FW~~LGg~~~y~~~~~~~~~~~~~~~~rLf~~s~~ 622 (729)
T 1d0n_A 545 TPSAAYLWVGAGASEAEKTGAQELLRVLRAQ--PVQVAEGSEPDSFWEALGGKATYRTSPRLKDKKMDAHPPRLFACSNK 622 (729)
T ss_dssp CSSCCBCEECTTCCHHHHHHHHHHHHHHTCC--CCCEETTCCCHHHHHTTTSCCCCCCCCCCSTTHHHHSCCEEEEEECT
T ss_pred cCCeEEEEECCCCCHHHHHHHHHHHHHhccC--cEEEeCCCChHHHHHhcCCCCccCcccccccccccccCCeEEEEEcC
Confidence 9999999999999999999999999999843 77899999999999999999999876433 21 2568999999999
Q ss_pred CCceEEeeec-ccccCCCCCCCEEEEeCCCeEEEEEcCCCCHHHHHHHHHHHHHHHHhcccccCCCCCCcEEEecCCCCC
Q 002853 628 EGDLKVKEIY-NFTQDDLTTEDILVLDCCREIYVWIGCHSDLNSKQQALNIGQKFLETDILVEGLSLETPIYVVTEGHEP 706 (873)
Q Consensus 628 ~G~~~v~Ei~-~F~Q~DL~~ddv~ILD~~~~IyVWiG~~a~~~ek~~Al~~A~~Yl~~~~~~~~~~~~~pi~~V~eG~EP 706 (873)
+|+|.++||. +|+|+||+++|||||||+++||||||++++..||+.||.+|++|+++++. +|++.+||++|.+|.||
T Consensus 623 ~G~~~v~ev~~~f~Q~dL~~~dv~iLD~~~eifvWiG~~a~~~er~~al~~A~~Y~~~~~~--~r~~~~pi~~V~~G~Ep 700 (729)
T 1d0n_A 623 IGRFVIEEVPGEFMQEDLATDDVMLLDTWDQVFVWVGKDSQDEEKTEALTSAKRYIDTDPA--HRDRRTPITVVKQGFEP 700 (729)
T ss_dssp TTCCEEEECCSSCCGGGCCTTSEEEEECSSCEEEEECTTSCHHHHSSHHHHHHHHHHHCTT--CCCTTCCEEEEETTCCC
T ss_pred CCcEEEEEecCcccHhHCCCCCEEEEeCCCEEEEEECCCCCHHHHHHHHHHHHHHHHhCcc--cCCCCCcEEEEeCCCCC
Confidence 9999999998 99999999999999999999999999999999999999999999998765 67888999999999999
Q ss_pred hhchhcc-ccCcccccccCCcHHHHHHH
Q 002853 707 PFFTCFF-AWDPLKAKMHGNSFERKLAI 733 (873)
Q Consensus 707 ~~Ft~~F-~Wd~~k~~~~~~s~~~k~~~ 733 (873)
..||++| +||+.++ +|++|++.-+.
T Consensus 701 ~~F~~~F~~Wd~~~~--~~~~~~~~~~~ 726 (729)
T 1d0n_A 701 PSFVGWFLGWDDSYW--SVDPLDRALAE 726 (729)
T ss_dssp HHHHTTCTTCCGGGG--TSCHHHHHHHH
T ss_pred HHHHhhhhhcCcccc--CCccHHHHHHh
Confidence 9999999 9999986 56886654443
|
| >1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A | Back alignment and structure |
|---|
| >3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
| >2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A | Back alignment and structure |
|---|
| >3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A | Back alignment and structure |
|---|
| >3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
| >3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A | Back alignment and structure |
|---|
| >2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A | Back alignment and structure |
|---|
| >1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A | Back alignment and structure |
|---|
| >1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G* | Back alignment and structure |
|---|
| >3tu5_B Gelsolin, protein cordon-BLeu, thymosin beta-4; unusual hairpin conformation in the D-loop, structural prote binding protein complex; HET: ATP; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
| >2ff3_A Gelsolin; protein-protein complex, structural protein/contractIle protein complex; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1 PDB: 2ff6_G* | Back alignment and structure |
|---|
| >3cip_G Gelsolin; actin, dictyostelium discoideum, actin-associated methyl histidine, ATP-binding, cytoskeleton, nucleotide-BIN phosphoprotein; HET: HIC ATP; 1.60A {Homo sapiens} SCOP: d.109.1.1 PDB: 3ci5_G* 1p8z_G* 1d4x_G* 1nlv_G* 1mdu_A* 1nm1_G* 1nmd_G* 1yag_G* 1yvn_G* 3cjb_G* 3cjc_G* 1esv_S* 1eqy_S* 1c0g_S* 1c0f_S* 1dej_S* 3a5l_S* 3a5m_S* 3a5n_S* 3a5o_S* | Back alignment and structure |
|---|
| >1t44_G Chimera of gelsolin domain 1 and C-terminal domain of thymosin beta-4; structural protein; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1 | Back alignment and structure |
|---|
| >2vik_A Villin 14T; actin-binding protein, capping protein, calcium-binding protein, cytoskeletal protein; NMR {Gallus gallus} SCOP: d.109.1.1 PDB: 2vil_A | Back alignment and structure |
|---|
| >3tu5_B Gelsolin, protein cordon-BLeu, thymosin beta-4; unusual hairpin conformation in the D-loop, structural prote binding protein complex; HET: ATP; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
| >2vik_A Villin 14T; actin-binding protein, capping protein, calcium-binding protein, cytoskeletal protein; NMR {Gallus gallus} SCOP: d.109.1.1 PDB: 2vil_A | Back alignment and structure |
|---|
| >3cip_G Gelsolin; actin, dictyostelium discoideum, actin-associated methyl histidine, ATP-binding, cytoskeleton, nucleotide-BIN phosphoprotein; HET: HIC ATP; 1.60A {Homo sapiens} SCOP: d.109.1.1 PDB: 3ci5_G* 1p8z_G* 1d4x_G* 1nlv_G* 1mdu_A* 1nm1_G* 1nmd_G* 1yag_G* 1yvn_G* 3cjb_G* 3cjc_G* 1esv_S* 1eqy_S* 1c0g_S* 1c0f_S* 1dej_S* 3a5l_S* 3a5m_S* 3a5n_S* 3a5o_S* | Back alignment and structure |
|---|
| >2ff3_A Gelsolin; protein-protein complex, structural protein/contractIle protein complex; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1 PDB: 2ff6_G* | Back alignment and structure |
|---|
| >1t44_G Chimera of gelsolin domain 1 and C-terminal domain of thymosin beta-4; structural protein; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1 | Back alignment and structure |
|---|
| >1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A | Back alignment and structure |
|---|
| >1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1 | Back alignment and structure |
|---|
| >1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1 | Back alignment and structure |
|---|
| >1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A | Back alignment and structure |
|---|
| >1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A | Back alignment and structure |
|---|
| >1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A | Back alignment and structure |
|---|
| >1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A | Back alignment and structure |
|---|
| >2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A | Back alignment and structure |
|---|
| >3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} | Back alignment and structure |
|---|
| >3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} | Back alignment and structure |
|---|
| >3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B | Back alignment and structure |
|---|
| >1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A | Back alignment and structure |
|---|
| >1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* | Back alignment and structure |
|---|
| >2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A | Back alignment and structure |
|---|
| >1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A | Back alignment and structure |
|---|
| >3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B | Back alignment and structure |
|---|
| >3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 | Back alignment and structure |
|---|
| >3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B | Back alignment and structure |
|---|
| >1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* | Back alignment and structure |
|---|
| >2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 873 | ||||
| d3cipg1 | 124 | d.109.1.1 (G:2-125) Gelsolin {Human (Homo sapiens) | 3e-40 | |
| d3cipg1 | 124 | d.109.1.1 (G:2-125) Gelsolin {Human (Homo sapiens) | 5e-22 | |
| d1j72a1 | 114 | d.109.1.1 (A:11-124) Macrophage capping protein Ca | 4e-38 | |
| d1j72a1 | 114 | d.109.1.1 (A:11-124) Macrophage capping protein Ca | 1e-21 | |
| d2vika_ | 126 | d.109.1.1 (A:) Villin, domain 1 (res. 1-126) {Chic | 4e-31 | |
| d2vika_ | 126 | d.109.1.1 (A:) Villin, domain 1 (res. 1-126) {Chic | 2e-22 | |
| d2fh1a1 | 121 | d.109.1.1 (A:412-532) Gelsolin {Human (Homo sapien | 1e-30 | |
| d2fh1a1 | 121 | d.109.1.1 (A:412-532) Gelsolin {Human (Homo sapien | 4e-25 | |
| d1kcqa_ | 104 | d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [Tax | 5e-28 | |
| d1kcqa_ | 104 | d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [Tax | 9e-17 | |
| d1kcqa_ | 104 | d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [Tax | 2e-11 | |
| d1kcqa_ | 104 | d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [Tax | 6e-10 | |
| d1kcqa_ | 104 | d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [Tax | 0.004 | |
| d1svya_ | 102 | d.109.1.1 (A:) Severin, domain 2 {Dictyostelium di | 8e-27 | |
| d1svya_ | 102 | d.109.1.1 (A:) Severin, domain 2 {Dictyostelium di | 4e-17 | |
| d1svya_ | 102 | d.109.1.1 (A:) Severin, domain 2 {Dictyostelium di | 1e-13 | |
| d1svya_ | 102 | d.109.1.1 (A:) Severin, domain 2 {Dictyostelium di | 2e-08 | |
| d2fh1a3 | 113 | d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapien | 1e-26 | |
| d2fh1a3 | 113 | d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapien | 4e-12 | |
| d2fh1a3 | 113 | d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapien | 5e-12 | |
| d2fh1a3 | 113 | d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapien | 1e-06 | |
| d1j72a2 | 116 | d.109.1.1 (A:125-240) Macrophage capping protein C | 1e-24 | |
| d1j72a2 | 116 | d.109.1.1 (A:125-240) Macrophage capping protein C | 2e-16 | |
| d1j72a2 | 116 | d.109.1.1 (A:125-240) Macrophage capping protein C | 2e-13 | |
| d1j72a2 | 116 | d.109.1.1 (A:125-240) Macrophage capping protein C | 1e-08 | |
| d2fh1a2 | 96 | d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapien | 6e-22 | |
| d2fh1a2 | 96 | d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapien | 6e-19 | |
| d2fh1a2 | 96 | d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapien | 6e-12 | |
| d2fh1a2 | 96 | d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapien | 2e-06 | |
| d1d0na3 | 121 | d.109.1.1 (A:263-383) Gelsolin {Horse (Equus cabal | 5e-21 | |
| d1d0na3 | 121 | d.109.1.1 (A:263-383) Gelsolin {Horse (Equus cabal | 4e-13 | |
| d1d0na3 | 121 | d.109.1.1 (A:263-383) Gelsolin {Horse (Equus cabal | 5e-12 | |
| d1d0na3 | 121 | d.109.1.1 (A:263-383) Gelsolin {Horse (Equus cabal | 5e-06 | |
| d1d0na3 | 121 | d.109.1.1 (A:263-383) Gelsolin {Horse (Equus cabal | 7e-05 | |
| d1j72a3 | 107 | d.109.1.1 (A:241-347) Macrophage capping protein C | 6e-20 | |
| d1j72a3 | 107 | d.109.1.1 (A:241-347) Macrophage capping protein C | 1e-12 | |
| d1j72a3 | 107 | d.109.1.1 (A:241-347) Macrophage capping protein C | 7e-12 | |
| d1j72a3 | 107 | d.109.1.1 (A:241-347) Macrophage capping protein C | 2e-06 | |
| d1j72a3 | 107 | d.109.1.1 (A:241-347) Macrophage capping protein C | 8e-06 | |
| d1j72a3 | 107 | d.109.1.1 (A:241-347) Macrophage capping protein C | 0.004 |
| >d3cipg1 d.109.1.1 (G:2-125) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Gelsolin-like superfamily: Actin depolymerizing proteins family: Gelsolin-like domain: Gelsolin species: Human (Homo sapiens) [TaxId: 9606]
Score = 142 bits (359), Expect = 3e-40
Identities = 50/117 (42%), Positives = 73/117 (62%)
Query: 10 SAFEGAGKKLGLEIWCIENLQLVSVPKSSHGKFYTGSAYVILNTALLKSGPPQHDIHYWL 69
F AGK+ GL+IW +E LV VP + +G F+TG AYVIL T L++G Q+D+HYWL
Sbjct: 5 PEFLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWL 64
Query: 70 GNDVNEEDSTLVSDKALELDAALGSCTVQYREVQGQETEKFLSYFRPCIIPLDGKYS 126
GN+ ++++S + ++LD L VQ+REVQG E+ FL YF+ + G +
Sbjct: 65 GNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVA 121
|
| >d3cipg1 d.109.1.1 (G:2-125) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 124 | Back information, alignment and structure |
|---|
| >d1j72a1 d.109.1.1 (A:11-124) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Length = 114 | Back information, alignment and structure |
|---|
| >d1j72a1 d.109.1.1 (A:11-124) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Length = 114 | Back information, alignment and structure |
|---|
| >d2vika_ d.109.1.1 (A:) Villin, domain 1 (res. 1-126) {Chicken (Gallus gallus) [TaxId: 9031]} Length = 126 | Back information, alignment and structure |
|---|
| >d2vika_ d.109.1.1 (A:) Villin, domain 1 (res. 1-126) {Chicken (Gallus gallus) [TaxId: 9031]} Length = 126 | Back information, alignment and structure |
|---|
| >d2fh1a1 d.109.1.1 (A:412-532) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 121 | Back information, alignment and structure |
|---|
| >d2fh1a1 d.109.1.1 (A:412-532) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 121 | Back information, alignment and structure |
|---|
| >d1kcqa_ d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
| >d1kcqa_ d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
| >d1kcqa_ d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
| >d1kcqa_ d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
| >d1kcqa_ d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
| >d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum [TaxId: 44689]} Length = 102 | Back information, alignment and structure |
|---|
| >d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum [TaxId: 44689]} Length = 102 | Back information, alignment and structure |
|---|
| >d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum [TaxId: 44689]} Length = 102 | Back information, alignment and structure |
|---|
| >d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum [TaxId: 44689]} Length = 102 | Back information, alignment and structure |
|---|
| >d2fh1a3 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 113 | Back information, alignment and structure |
|---|
| >d2fh1a3 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 113 | Back information, alignment and structure |
|---|
| >d2fh1a3 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 113 | Back information, alignment and structure |
|---|
| >d2fh1a3 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 113 | Back information, alignment and structure |
|---|
| >d1j72a2 d.109.1.1 (A:125-240) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Length = 116 | Back information, alignment and structure |
|---|
| >d1j72a2 d.109.1.1 (A:125-240) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Length = 116 | Back information, alignment and structure |
|---|
| >d1j72a2 d.109.1.1 (A:125-240) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Length = 116 | Back information, alignment and structure |
|---|
| >d1j72a2 d.109.1.1 (A:125-240) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Length = 116 | Back information, alignment and structure |
|---|
| >d2fh1a2 d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
| >d2fh1a2 d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
| >d2fh1a2 d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
| >d2fh1a2 d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
| >d1d0na3 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus caballus) [TaxId: 9796]} Length = 121 | Back information, alignment and structure |
|---|
| >d1d0na3 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus caballus) [TaxId: 9796]} Length = 121 | Back information, alignment and structure |
|---|
| >d1d0na3 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus caballus) [TaxId: 9796]} Length = 121 | Back information, alignment and structure |
|---|
| >d1d0na3 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus caballus) [TaxId: 9796]} Length = 121 | Back information, alignment and structure |
|---|
| >d1d0na3 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus caballus) [TaxId: 9796]} Length = 121 | Back information, alignment and structure |
|---|
| >d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
| >d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
| >d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
| >d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
| >d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
| >d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 873 | |||
| d3cipg1 | 124 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1j72a1 | 114 | Macrophage capping protein Cap G {Human (Homo sapi | 100.0 | |
| d2vika_ | 126 | Villin, domain 1 (res. 1-126) {Chicken (Gallus gal | 100.0 | |
| d2fh1a1 | 121 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2fh1a1 | 121 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2vika_ | 126 | Villin, domain 1 (res. 1-126) {Chicken (Gallus gal | 100.0 | |
| d3cipg1 | 124 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1j72a1 | 114 | Macrophage capping protein Cap G {Human (Homo sapi | 100.0 | |
| d2fh1a3 | 113 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 99.93 | |
| d1j72a2 | 116 | Macrophage capping protein Cap G {Human (Homo sapi | 99.91 | |
| d2fh1a2 | 96 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 99.9 | |
| d1kcqa_ | 104 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 99.89 | |
| d2fh1a3 | 113 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 99.89 | |
| d1svya_ | 102 | Severin, domain 2 {Dictyostelium discoideum [TaxId | 99.88 | |
| d1d0na3 | 121 | Gelsolin {Horse (Equus caballus) [TaxId: 9796]} | 99.88 | |
| d2fh1a2 | 96 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 99.87 | |
| d1j72a3 | 107 | Macrophage capping protein Cap G {Human (Homo sapi | 99.87 | |
| d1d0na3 | 121 | Gelsolin {Horse (Equus caballus) [TaxId: 9796]} | 99.85 | |
| d1j72a3 | 107 | Macrophage capping protein Cap G {Human (Homo sapi | 99.84 | |
| d1svya_ | 102 | Severin, domain 2 {Dictyostelium discoideum [TaxId | 99.79 | |
| d1kcqa_ | 104 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 99.78 | |
| d1j72a2 | 116 | Macrophage capping protein Cap G {Human (Homo sapi | 99.78 | |
| d1qzpa_ | 68 | Dematin {Human (Homo sapiens) [TaxId: 9606]} | 97.28 | |
| d1ujsa_ | 88 | Actin-binding LIM protein homologue KIAA0843 {Huma | 96.64 | |
| d1yu5x1 | 67 | Villin {Chicken (Gallus gallus) [TaxId: 9031]} | 96.51 | |
| d1pd0a4 | 173 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 96.14 | |
| d1pd0a4 | 173 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 95.6 | |
| d2qtva4 | 142 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 88.02 |
| >d3cipg1 d.109.1.1 (G:2-125) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Gelsolin-like superfamily: Actin depolymerizing proteins family: Gelsolin-like domain: Gelsolin species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-41 Score=319.45 Aligned_cols=122 Identities=41% Similarity=0.680 Sum_probs=119.3
Q ss_pred CCcccccCCccccEEEEEEECCeEeecCCCCCCccccCCeEEEEeeeecCCCCCceEEEEEccCCcCchhhhHHHHHHHH
Q 002853 8 IDSAFEGAGKKLGLEIWCIENLQLVSVPKSSHGKFYTGSAYVILNTALLKSGPPQHDIHYWLGNDVNEEDSTLVSDKALE 87 (873)
Q Consensus 8 ~d~~~~g~G~~~gl~iWrIe~~~~~~vp~~~~G~Fy~gdsYIVl~t~~~~~g~~~~~i~~W~G~~ss~de~g~AA~~ave 87 (873)
..|+|.|+|++|||+||||+++++++||++.||+||+||||||||||..++++.+|+||||+|++||++++++||++|+|
T Consensus 3 ~~p~~~~~g~~~Gl~VWrIe~~~~~~vp~~~~G~Fy~gd~YIil~ty~~~~g~~~~~iy~W~G~~ss~~e~~~aa~~ave 82 (124)
T d3cipg1 3 EHPEFLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQ 82 (124)
T ss_dssp CCHHHHHTTSSSEEEEEEEETTEEEECCGGGTTEEETTCEEEEEEEEECTTSCEEEEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred cchhhhcCCCCCceEEEEEeCCEEEECCHHHccEEeCCCEEEEEEEEEcCCCCEeEEEEEEECCCCChhHHHHHHHHHHH
Confidence 46999999999999999999999999999999999999999999999888899999999999999999999999999999
Q ss_pred HHHHhCCCceEEEeeccCCcHHHHhhhCCcEEEecCCccCCC
Q 002853 88 LDAALGSCTVQYREVQGQETEKFLSYFRPCIIPLDGKYSLRS 129 (873)
Q Consensus 88 Ld~~lgg~~vq~Re~QG~Es~~Fl~~Fk~~ii~~~Gg~~sgf 129 (873)
||++|+|+++|+||+||+||++||+||+++|||++||++|||
T Consensus 83 Ld~~l~g~~vq~R~~Qg~Ep~~Fl~lF~~~~ii~~GG~~sgf 124 (124)
T d3cipg1 83 LDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGF 124 (124)
T ss_dssp HHHHTTTCEEEEEEETTCCCHHHHTTCTTCCEEESCCCCCCC
T ss_pred HHHHcCCCccEEEEecCCCCHHHHHHhCCCeEEeeCCcccCC
Confidence 999999999999999999999999999999999999999998
|
| >d1j72a1 d.109.1.1 (A:11-124) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2vika_ d.109.1.1 (A:) Villin, domain 1 (res. 1-126) {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
| >d2fh1a1 d.109.1.1 (A:412-532) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2fh1a1 d.109.1.1 (A:412-532) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2vika_ d.109.1.1 (A:) Villin, domain 1 (res. 1-126) {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
| >d3cipg1 d.109.1.1 (G:2-125) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1j72a1 d.109.1.1 (A:11-124) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2fh1a3 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1j72a2 d.109.1.1 (A:125-240) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2fh1a2 d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1kcqa_ d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2fh1a3 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
| >d1d0na3 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
| >d2fh1a2 d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1d0na3 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
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| >d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
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| >d1kcqa_ d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1j72a2 d.109.1.1 (A:125-240) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1qzpa_ a.14.1.1 (A:) Dematin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1ujsa_ a.14.1.1 (A:) Actin-binding LIM protein homologue KIAA0843 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1yu5x1 a.14.1.1 (X:10-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
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| >d1pd0a4 d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1pd0a4 d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d2qtva4 d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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